Query 011216
Match_columns 491
No_of_seqs 889 out of 3422
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 22:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.8E-52 3.8E-57 355.0 25.7 297 116-475 107-444 (480)
2 KOG0286 G-protein beta subunit 100.0 1.4E-49 3.1E-54 326.0 29.6 296 117-468 48-343 (343)
3 KOG0271 Notchless-like WD40 re 100.0 7.3E-50 1.6E-54 339.1 24.9 293 114-468 147-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-49 1.8E-53 336.9 23.6 285 121-468 172-458 (459)
5 KOG0293 WD40 repeat-containing 100.0 3.5E-43 7.6E-48 301.3 25.8 306 108-472 208-515 (519)
6 KOG0265 U5 snRNP-specific prot 100.0 5.1E-42 1.1E-46 282.7 27.6 295 117-469 40-337 (338)
7 KOG0279 G protein beta subunit 100.0 7.6E-41 1.6E-45 273.1 30.7 291 118-470 9-313 (315)
8 KOG0315 G-protein beta subunit 100.0 2.4E-40 5.3E-45 265.7 29.8 282 137-476 11-294 (311)
9 KOG0273 Beta-transducin family 100.0 1.9E-40 4.1E-45 289.3 30.2 305 112-476 167-488 (524)
10 KOG0645 WD40 repeat protein [G 100.0 9.3E-40 2E-44 265.6 31.3 292 117-470 7-311 (312)
11 KOG0284 Polyadenylation factor 100.0 8.2E-42 1.8E-46 292.6 20.2 290 122-474 94-384 (464)
12 KOG0282 mRNA splicing factor [ 100.0 1.3E-41 2.8E-46 297.7 19.6 298 111-468 201-503 (503)
13 KOG0272 U4/U6 small nuclear ri 100.0 1E-41 2.2E-46 293.3 18.1 250 113-426 206-458 (459)
14 KOG0295 WD40 repeat-containing 100.0 3.4E-40 7.4E-45 278.8 25.6 292 114-469 98-405 (406)
15 KOG0266 WD40 repeat-containing 100.0 3.1E-39 6.7E-44 308.1 32.6 290 122-470 157-454 (456)
16 KOG0273 Beta-transducin family 100.0 3.3E-39 7.2E-44 281.6 28.9 280 124-470 235-523 (524)
17 KOG0263 Transcription initiati 100.0 2.2E-40 4.8E-45 307.1 20.0 289 110-473 364-652 (707)
18 KOG0285 Pleiotropic regulator 100.0 2.6E-38 5.7E-43 266.7 28.6 292 115-472 142-441 (460)
19 KOG0318 WD40 repeat stress pro 100.0 3.9E-37 8.4E-42 272.2 33.3 345 110-475 176-565 (603)
20 cd00200 WD40 WD40 domain, foun 100.0 6.9E-37 1.5E-41 279.0 35.7 287 118-468 3-289 (289)
21 KOG0316 Conserved WD40 repeat- 100.0 1.4E-37 3E-42 247.8 26.7 290 112-468 5-297 (307)
22 KOG0315 G-protein beta subunit 100.0 2E-37 4.3E-42 249.0 26.5 290 92-449 17-309 (311)
23 PLN00181 protein SPA1-RELATED; 100.0 1.3E-36 2.9E-41 311.9 39.0 295 119-469 478-792 (793)
24 KOG0296 Angio-associated migra 100.0 7.8E-37 1.7E-41 258.7 28.8 325 115-470 55-398 (399)
25 KOG0279 G protein beta subunit 100.0 2.1E-36 4.6E-41 247.1 27.3 256 161-475 7-267 (315)
26 KOG0286 G-protein beta subunit 100.0 9.1E-36 2E-40 245.0 29.1 251 163-475 49-308 (343)
27 KOG0281 Beta-TrCP (transducin 100.0 1.1E-37 2.4E-42 262.1 15.9 275 123-475 196-482 (499)
28 KOG0319 WD40-repeat-containing 100.0 1.2E-36 2.5E-41 279.7 23.5 304 113-477 312-626 (775)
29 KOG0319 WD40-repeat-containing 100.0 2.3E-36 5.1E-41 277.7 24.2 389 46-476 54-583 (775)
30 KOG0318 WD40 repeat stress pro 100.0 3.1E-34 6.8E-39 253.9 36.0 312 100-475 35-355 (603)
31 KOG0291 WD40-repeat-containing 100.0 1.4E-34 3E-39 266.5 33.9 301 113-473 178-511 (893)
32 KOG0263 Transcription initiati 100.0 1.5E-35 3.2E-40 275.1 24.3 206 118-347 445-650 (707)
33 KOG0291 WD40-repeat-containing 100.0 3.7E-34 8.1E-39 263.7 32.3 289 122-475 263-555 (893)
34 KOG0275 Conserved WD40 repeat- 100.0 6.4E-36 1.4E-40 249.4 18.3 287 122-468 211-507 (508)
35 KOG0276 Vesicle coat complex C 100.0 9.6E-35 2.1E-39 262.1 25.9 293 117-473 6-301 (794)
36 KOG0278 Serine/threonine kinas 100.0 1.6E-35 3.4E-40 238.2 18.6 291 116-474 6-301 (334)
37 KOG0643 Translation initiation 100.0 1.2E-34 2.6E-39 235.4 23.2 290 117-472 3-319 (327)
38 KOG0284 Polyadenylation factor 100.0 3.6E-36 7.7E-41 258.1 14.9 243 171-474 98-341 (464)
39 KOG1407 WD40 repeat protein [F 100.0 5.8E-34 1.3E-38 230.7 26.2 288 118-470 14-311 (313)
40 KOG0288 WD40 repeat protein Ti 100.0 1.2E-35 2.6E-40 255.2 16.8 302 105-468 156-459 (459)
41 KOG0295 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 245.1 22.3 258 165-477 104-371 (406)
42 KOG0772 Uncharacterized conser 100.0 2.2E-34 4.7E-39 254.2 24.4 317 109-470 152-487 (641)
43 KOG0281 Beta-TrCP (transducin 100.0 1.1E-35 2.3E-40 250.1 15.1 238 169-476 197-434 (499)
44 KOG0640 mRNA cleavage stimulat 100.0 3.1E-34 6.7E-39 237.9 23.4 302 115-470 103-426 (430)
45 KOG0285 Pleiotropic regulator 100.0 1.1E-34 2.3E-39 245.0 20.3 248 164-474 146-393 (460)
46 KOG0277 Peroxisomal targeting 100.0 7.1E-34 1.5E-38 229.3 23.6 285 127-469 11-308 (311)
47 KOG0283 WD40 repeat-containing 100.0 4E-34 8.7E-39 267.9 25.1 312 118-474 260-580 (712)
48 KOG0316 Conserved WD40 repeat- 100.0 6.4E-34 1.4E-38 227.0 20.4 251 163-476 11-263 (307)
49 KOG0266 WD40 repeat-containing 100.0 9E-33 1.9E-37 263.8 30.6 254 167-475 157-414 (456)
50 KOG0292 Vesicle coat complex C 100.0 3.2E-33 6.8E-38 261.7 26.2 296 120-474 5-325 (1202)
51 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-31 3E-36 223.4 33.0 295 118-473 8-306 (311)
52 KOG0313 Microtubule binding pr 100.0 1.9E-32 4E-37 233.3 27.8 293 117-471 98-419 (423)
53 KOG0306 WD40-repeat-containing 100.0 1.6E-32 3.5E-37 252.9 27.8 287 118-471 367-665 (888)
54 KOG0310 Conserved WD40 repeat- 100.0 2.2E-32 4.7E-37 240.4 26.4 299 111-475 13-314 (487)
55 KOG0276 Vesicle coat complex C 100.0 1.9E-32 4.1E-37 247.4 23.2 249 168-474 12-261 (794)
56 KOG0265 U5 snRNP-specific prot 100.0 4.2E-32 9.1E-37 224.3 23.3 252 162-473 40-299 (338)
57 KOG0645 WD40 repeat protein [G 100.0 4.7E-31 1E-35 215.1 28.1 254 162-472 7-263 (312)
58 KOG0300 WD40 repeat-containing 100.0 3.5E-32 7.7E-37 226.4 20.9 307 117-472 141-478 (481)
59 KOG0306 WD40-repeat-containing 100.0 2.9E-31 6.3E-36 244.6 29.0 327 115-480 98-590 (888)
60 KOG0274 Cdc4 and related F-box 100.0 2.8E-31 6E-36 252.3 29.7 282 122-476 206-488 (537)
61 KOG0973 Histone transcription 100.0 9.7E-32 2.1E-36 258.4 26.3 317 118-475 7-360 (942)
62 KOG0268 Sof1-like rRNA process 100.0 4.7E-33 1E-37 235.5 15.1 303 108-479 50-354 (433)
63 KOG0641 WD40 repeat protein [G 100.0 8.1E-30 1.8E-34 202.5 30.4 291 123-470 31-349 (350)
64 KOG0292 Vesicle coat complex C 100.0 7.3E-32 1.6E-36 252.7 21.9 284 170-490 10-296 (1202)
65 KOG0305 Anaphase promoting com 100.0 1.4E-30 2.9E-35 238.1 29.2 278 129-474 182-465 (484)
66 PTZ00421 coronin; Provisional 100.0 3.3E-30 7.1E-35 244.9 32.4 279 122-452 18-315 (493)
67 KOG2096 WD40 repeat protein [G 100.0 4.9E-31 1.1E-35 219.7 23.2 311 118-471 80-403 (420)
68 PLN00181 protein SPA1-RELATED; 100.0 6.4E-30 1.4E-34 262.7 36.5 274 145-472 457-740 (793)
69 KOG4283 Transcription-coupled 100.0 1E-30 2.2E-35 215.6 23.7 301 118-470 37-365 (397)
70 KOG0299 U3 snoRNP-associated p 100.0 9.4E-31 2E-35 228.4 24.7 305 117-473 135-459 (479)
71 KOG1408 WD40 repeat protein [F 100.0 9E-31 1.9E-35 240.0 25.5 338 127-471 327-714 (1080)
72 KOG0296 Angio-associated migra 100.0 1.4E-30 3E-35 220.9 24.2 286 163-474 58-360 (399)
73 cd00200 WD40 WD40 domain, foun 100.0 6.3E-30 1.4E-34 233.0 30.3 247 166-473 6-252 (289)
74 KOG0647 mRNA export protein (c 100.0 8.4E-30 1.8E-34 210.9 26.9 279 124-459 27-312 (347)
75 KOG0289 mRNA splicing factor [ 100.0 1E-29 2.3E-34 220.2 27.4 283 124-469 219-505 (506)
76 KOG0282 mRNA splicing factor [ 100.0 2.5E-31 5.3E-36 233.4 16.7 254 162-475 207-467 (503)
77 KOG0275 Conserved WD40 repeat- 100.0 7.4E-31 1.6E-35 219.2 17.1 255 170-475 214-472 (508)
78 KOG1446 Histone H3 (Lys4) meth 100.0 7.8E-29 1.7E-33 207.1 27.8 250 168-475 13-267 (311)
79 KOG0277 Peroxisomal targeting 100.0 4.1E-30 9E-35 207.6 19.0 246 123-427 59-308 (311)
80 PTZ00421 coronin; Provisional 100.0 1.5E-28 3.2E-33 233.6 30.8 257 171-473 22-293 (493)
81 KOG0293 WD40 repeat-containing 100.0 1.4E-29 3E-34 218.1 20.3 273 94-429 233-514 (519)
82 KOG0299 U3 snoRNP-associated p 100.0 3.4E-29 7.5E-34 218.7 23.1 263 166-476 139-416 (479)
83 PTZ00420 coronin; Provisional 100.0 1.3E-27 2.9E-32 227.9 34.5 257 142-453 50-319 (568)
84 KOG0301 Phospholipase A2-activ 100.0 2.3E-28 4.9E-33 223.8 26.8 284 117-474 7-292 (745)
85 KOG0294 WD40 repeat-containing 100.0 8.7E-28 1.9E-32 200.2 26.7 269 139-474 4-285 (362)
86 KOG0308 Conserved WD40 repeat- 100.0 2.3E-29 5E-34 228.6 18.7 285 129-472 29-329 (735)
87 KOG1036 Mitotic spindle checkp 100.0 3.1E-27 6.8E-32 196.5 28.8 279 124-460 13-294 (323)
88 KOG0264 Nucleosome remodeling 100.0 8.6E-29 1.9E-33 216.2 20.5 270 121-471 121-405 (422)
89 KOG0639 Transducin-like enhanc 100.0 1E-28 2.2E-33 217.8 20.7 285 121-469 416-703 (705)
90 PTZ00420 coronin; Provisional 100.0 2.2E-27 4.7E-32 226.5 31.4 230 187-472 50-295 (568)
91 KOG0313 Microtubule binding pr 100.0 3.5E-28 7.5E-33 207.4 22.2 271 113-427 133-417 (423)
92 KOG1332 Vesicle coat complex C 100.0 8.5E-29 1.9E-33 198.9 16.6 256 120-428 7-286 (299)
93 KOG4328 WD40 protein [Function 100.0 7.4E-28 1.6E-32 210.2 23.8 306 118-469 180-494 (498)
94 KOG2055 WD40 repeat protein [G 100.0 1.8E-27 3.9E-32 208.0 23.4 293 122-470 211-512 (514)
95 KOG0274 Cdc4 and related F-box 100.0 5.1E-27 1.1E-31 223.3 27.7 256 112-440 236-494 (537)
96 KOG0973 Histone transcription 100.0 2.3E-27 5E-32 228.5 24.9 265 166-473 10-315 (942)
97 KOG0269 WD40 repeat-containing 100.0 7.4E-28 1.6E-32 223.1 20.7 295 124-473 39-343 (839)
98 KOG0310 Conserved WD40 repeat- 100.0 8.6E-28 1.9E-32 211.6 19.9 241 170-471 27-269 (487)
99 KOG0647 mRNA export protein (c 100.0 8.6E-27 1.9E-31 193.2 24.0 249 166-475 24-286 (347)
100 KOG0305 Anaphase promoting com 100.0 6.9E-27 1.5E-31 214.0 25.5 246 121-430 214-463 (484)
101 KOG1407 WD40 repeat protein [F 100.0 3.1E-27 6.6E-32 191.9 20.4 250 165-475 16-266 (313)
102 KOG1408 WD40 repeat protein [F 100.0 2E-26 4.3E-31 211.8 26.8 204 270-479 460-680 (1080)
103 KOG0294 WD40 repeat-containing 100.0 4.9E-26 1.1E-30 189.8 25.9 265 115-448 34-305 (362)
104 KOG0641 WD40 repeat protein [G 100.0 1.5E-25 3.4E-30 178.2 27.4 260 170-473 33-306 (350)
105 KOG0289 mRNA splicing factor [ 100.0 1.6E-26 3.5E-31 200.5 23.3 263 105-427 242-505 (506)
106 KOG1273 WD40 repeat protein [G 100.0 2.3E-26 4.9E-31 191.8 22.6 289 127-472 26-324 (405)
107 KOG0650 WD40 repeat nucleolar 100.0 5.1E-26 1.1E-30 205.1 25.1 307 111-467 387-732 (733)
108 KOG0308 Conserved WD40 repeat- 100.0 7.5E-27 1.6E-31 212.4 19.8 220 117-348 66-287 (735)
109 KOG0321 WD40 repeat-containing 100.0 2.6E-26 5.7E-31 208.5 23.1 297 128-476 53-397 (720)
110 KOG1274 WD40 repeat protein [G 100.0 2.1E-25 4.6E-30 210.8 29.7 281 121-468 10-298 (933)
111 KOG1332 Vesicle coat complex C 100.0 1.1E-26 2.3E-31 187.0 17.7 261 166-474 8-290 (299)
112 KOG2919 Guanine nucleotide-bin 99.9 9.5E-26 2.1E-30 188.7 23.0 283 127-462 52-362 (406)
113 KOG1036 Mitotic spindle checkp 99.9 3.3E-25 7.2E-30 184.6 25.5 244 168-476 12-268 (323)
114 KOG1539 WD repeat protein [Gen 99.9 2.7E-25 5.8E-30 207.9 27.7 302 110-475 188-611 (910)
115 KOG0646 WD40 repeat protein [G 99.9 7.9E-26 1.7E-30 198.2 22.7 270 145-476 17-313 (476)
116 KOG0278 Serine/threonine kinas 99.9 6.1E-27 1.3E-31 188.9 13.9 249 118-433 53-302 (334)
117 KOG0772 Uncharacterized conser 99.9 6.4E-26 1.4E-30 201.0 21.1 265 163-473 161-448 (641)
118 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4E-24 8.6E-29 196.5 33.6 276 136-474 1-283 (300)
119 KOG0300 WD40 repeat-containing 99.9 1.5E-25 3.3E-30 187.0 21.3 270 138-478 126-436 (481)
120 KOG2445 Nuclear pore complex c 99.9 8.8E-25 1.9E-29 181.8 24.8 278 121-472 10-320 (361)
121 KOG0288 WD40 repeat protein Ti 99.9 1.2E-26 2.5E-31 200.2 13.4 249 164-475 170-422 (459)
122 KOG0640 mRNA cleavage stimulat 99.9 2.6E-26 5.7E-31 191.0 14.9 210 225-474 110-339 (430)
123 KOG2106 Uncharacterized conser 99.9 1E-23 2.2E-28 186.7 31.3 301 115-475 95-482 (626)
124 KOG1063 RNA polymerase II elon 99.9 1.3E-24 2.9E-29 199.3 26.5 300 119-472 262-650 (764)
125 KOG1274 WD40 repeat protein [G 99.9 1.5E-24 3.2E-29 205.2 27.4 248 167-471 11-263 (933)
126 KOG0643 Translation initiation 99.9 1.5E-24 3.2E-29 176.9 23.5 240 163-460 4-251 (327)
127 KOG1539 WD repeat protein [Gen 99.9 3.1E-24 6.7E-29 200.8 27.9 301 121-470 241-648 (910)
128 KOG2055 WD40 repeat protein [G 99.9 2E-25 4.3E-30 195.3 18.6 316 46-428 189-512 (514)
129 KOG0646 WD40 repeat protein [G 99.9 7.9E-25 1.7E-29 192.0 21.6 271 137-453 51-332 (476)
130 KOG0639 Transducin-like enhanc 99.9 2.5E-25 5.5E-30 196.6 17.8 251 167-477 417-670 (705)
131 KOG4283 Transcription-coupled 99.9 1.1E-24 2.3E-29 180.2 19.8 235 166-476 40-282 (397)
132 KOG0264 Nucleosome remodeling 99.9 6.5E-25 1.4E-29 192.1 19.5 219 115-347 168-405 (422)
133 KOG0267 Microtubule severing p 99.9 2.4E-26 5.1E-31 211.6 10.6 256 137-462 5-260 (825)
134 KOG2048 WD40 repeat protein [G 99.9 3.8E-23 8.2E-28 189.5 31.3 237 98-347 83-320 (691)
135 KOG2106 Uncharacterized conser 99.9 1E-22 2.2E-27 180.4 32.7 285 119-471 195-522 (626)
136 KOG1063 RNA polymerase II elon 99.9 5.5E-24 1.2E-28 195.3 23.8 319 119-470 356-763 (764)
137 KOG2048 WD40 repeat protein [G 99.9 3.5E-23 7.5E-28 189.7 28.6 282 124-471 25-320 (691)
138 KOG0268 Sof1-like rRNA process 99.9 5.4E-25 1.2E-29 186.9 14.7 262 103-433 88-350 (433)
139 KOG0283 WD40 repeat-containing 99.9 3.1E-24 6.8E-29 201.9 21.3 208 115-349 360-579 (712)
140 KOG0302 Ribosome Assembly prot 99.9 6.3E-24 1.4E-28 181.4 21.1 215 119-348 146-380 (440)
141 KOG1009 Chromatin assembly com 99.9 2.2E-23 4.7E-28 179.9 23.8 328 123-475 12-377 (434)
142 KOG0267 Microtubule severing p 99.9 6.8E-26 1.5E-30 208.6 9.0 201 226-471 27-227 (825)
143 KOG0301 Phospholipase A2-activ 99.9 6.9E-24 1.5E-28 194.7 21.0 239 164-470 9-249 (745)
144 KOG0302 Ribosome Assembly prot 99.9 9E-24 2E-28 180.5 20.0 263 166-468 148-436 (440)
145 KOG0307 Vesicle coat complex C 99.9 6.4E-25 1.4E-29 212.8 14.6 291 128-473 10-330 (1049)
146 KOG0269 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 202.1 15.1 251 171-475 41-301 (839)
147 KOG1188 WD40 repeat protein [G 99.9 1.6E-23 3.5E-28 176.8 20.0 292 137-473 41-349 (376)
148 KOG1034 Transcriptional repres 99.9 2.9E-22 6.3E-27 168.3 26.7 309 118-470 32-383 (385)
149 KOG0270 WD40 repeat-containing 99.9 2.1E-23 4.4E-28 182.1 19.5 249 128-433 177-454 (463)
150 KOG4227 WD40 repeat protein [G 99.9 5.5E-23 1.2E-27 176.5 21.5 301 118-470 50-387 (609)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-21 2.9E-26 179.7 32.4 257 125-450 31-300 (300)
152 KOG0270 WD40 repeat-containing 99.9 2.4E-22 5.2E-27 175.4 24.5 303 127-474 128-453 (463)
153 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-22 9.6E-27 176.0 20.2 264 125-452 35-305 (673)
154 KOG0322 G-protein beta subunit 99.9 6.5E-23 1.4E-27 167.1 13.5 299 112-469 2-322 (323)
155 KOG1445 Tumor-specific antigen 99.9 6.3E-22 1.4E-26 180.1 20.9 126 117-258 72-201 (1012)
156 KOG1538 Uncharacterized conser 99.9 8.6E-22 1.9E-26 180.2 21.7 277 126-472 14-295 (1081)
157 KOG0321 WD40 repeat-containing 99.9 5.8E-22 1.2E-26 180.5 19.4 264 174-477 54-354 (720)
158 KOG0307 Vesicle coat complex C 99.9 7.1E-23 1.5E-27 198.7 14.0 255 121-431 61-330 (1049)
159 KOG4378 Nuclear protein COP1 [ 99.9 1.1E-21 2.5E-26 173.4 19.5 272 145-476 11-286 (673)
160 KOG2096 WD40 repeat protein [G 99.9 1.8E-21 4E-26 162.9 19.0 209 223-473 82-311 (420)
161 KOG1310 WD40 repeat protein [G 99.9 5.5E-21 1.2E-25 171.2 23.3 225 115-347 41-304 (758)
162 KOG1007 WD repeat protein TSSC 99.9 3.5E-21 7.5E-26 159.1 20.2 285 119-471 58-362 (370)
163 KOG1517 Guanine nucleotide bin 99.9 1.3E-20 2.8E-25 181.0 24.8 308 124-473 1064-1384(1387)
164 KOG0649 WD40 repeat protein [G 99.9 9.1E-20 2E-24 147.2 25.0 285 125-468 11-314 (325)
165 KOG0290 Conserved WD40 repeat- 99.9 8.7E-20 1.9E-24 151.0 24.0 288 125-466 45-361 (364)
166 KOG1334 WD40 repeat protein [G 99.9 2E-21 4.3E-26 171.6 14.2 318 117-475 135-471 (559)
167 KOG4328 WD40 protein [Function 99.9 2.5E-20 5.4E-25 163.5 19.9 254 166-473 183-453 (498)
168 KOG1587 Cytoplasmic dynein int 99.9 4.7E-19 1E-23 167.7 29.4 282 145-477 221-523 (555)
169 KOG1034 Transcriptional repres 99.9 1.6E-20 3.5E-25 158.0 17.0 252 122-428 87-383 (385)
170 COG2319 FOG: WD40 repeat [Gene 99.9 3.4E-18 7.4E-23 165.4 35.9 292 119-473 60-362 (466)
171 KOG0303 Actin-binding protein 99.9 8.8E-20 1.9E-24 157.2 21.2 208 222-474 76-298 (472)
172 KOG1538 Uncharacterized conser 99.9 4.5E-20 9.8E-25 169.1 20.3 259 99-428 28-293 (1081)
173 KOG1273 WD40 repeat protein [G 99.9 7E-20 1.5E-24 153.3 19.1 200 230-471 26-227 (405)
174 PRK11028 6-phosphogluconolacto 99.9 1.1E-18 2.4E-23 161.8 29.4 283 140-472 6-306 (330)
175 KOG0650 WD40 repeat nucleolar 99.9 6.9E-20 1.5E-24 165.9 20.0 243 163-469 394-679 (733)
176 KOG1963 WD40 repeat protein [G 99.9 1.2E-18 2.6E-23 165.2 28.5 296 121-472 202-540 (792)
177 KOG0290 Conserved WD40 repeat- 99.8 2.6E-19 5.7E-24 148.2 20.9 252 169-474 44-322 (364)
178 KOG2445 Nuclear pore complex c 99.8 4.9E-19 1.1E-23 147.8 22.3 220 224-471 10-257 (361)
179 KOG0644 Uncharacterized conser 99.8 1.3E-20 2.8E-25 176.8 13.5 294 118-490 184-482 (1113)
180 KOG0642 Cell-cycle nuclear pro 99.8 3.3E-20 7.1E-25 167.1 14.1 258 164-473 289-564 (577)
181 KOG1240 Protein kinase contain 99.8 1.9E-18 4.2E-23 168.9 27.0 318 118-468 1042-1431(1431)
182 KOG1523 Actin-related protein 99.8 2.3E-18 5E-23 144.7 22.9 214 121-349 7-239 (361)
183 KOG0303 Actin-binding protein 99.8 7.7E-19 1.7E-23 151.5 20.2 243 136-431 44-297 (472)
184 KOG1445 Tumor-specific antigen 99.8 2.2E-19 4.8E-24 163.7 17.2 244 177-474 587-848 (1012)
185 KOG2919 Guanine nucleotide-bin 99.8 3.3E-18 7.2E-23 143.9 21.6 210 124-348 104-329 (406)
186 COG2319 FOG: WD40 repeat [Gene 99.8 1E-16 2.2E-21 155.1 35.9 292 115-471 146-443 (466)
187 KOG1587 Cytoplasmic dynein int 99.8 5.5E-18 1.2E-22 160.5 25.2 275 109-429 227-517 (555)
188 KOG4227 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 149.4 18.1 264 166-474 53-326 (609)
189 KOG0642 Cell-cycle nuclear pro 99.8 6.4E-19 1.4E-23 158.8 16.2 272 118-440 288-573 (577)
190 PRK01742 tolB translocation pr 99.8 2.9E-18 6.3E-23 163.8 21.9 235 145-451 183-426 (429)
191 KOG1007 WD repeat protein TSSC 99.8 4.8E-18 1E-22 140.7 18.0 209 122-347 121-362 (370)
192 KOG0771 Prolactin regulatory e 99.8 7.4E-18 1.6E-22 147.0 20.2 204 231-475 148-359 (398)
193 KOG4497 Uncharacterized conser 99.8 1.1E-17 2.5E-22 141.0 20.6 330 129-488 13-409 (447)
194 KOG2110 Uncharacterized conser 99.8 5.7E-16 1.2E-20 133.0 30.8 280 124-472 5-332 (391)
195 PRK11028 6-phosphogluconolacto 99.8 1.9E-16 4E-21 146.9 29.8 252 124-428 34-304 (330)
196 KOG0649 WD40 repeat protein [G 99.8 2.2E-17 4.8E-22 133.5 19.7 254 171-474 12-278 (325)
197 KOG0644 Uncharacterized conser 99.8 6.6E-19 1.4E-23 165.5 9.5 244 165-476 186-432 (1113)
198 KOG0771 Prolactin regulatory e 99.8 7E-18 1.5E-22 147.2 15.1 197 128-347 148-355 (398)
199 KOG1524 WD40 repeat-containing 99.8 1.6E-17 3.4E-22 148.9 17.1 209 137-426 76-284 (737)
200 KOG1524 WD40 repeat-containing 99.8 3.7E-17 8.1E-22 146.6 19.4 265 122-467 12-283 (737)
201 KOG2321 WD40 repeat protein [G 99.8 3.6E-16 7.7E-21 141.5 24.2 289 122-476 49-349 (703)
202 KOG1009 Chromatin assembly com 99.8 1.3E-16 2.7E-21 138.5 20.3 272 171-472 15-331 (434)
203 KOG2110 Uncharacterized conser 99.8 6.9E-15 1.5E-19 126.5 30.6 198 125-349 47-251 (391)
204 PRK03629 tolB translocation pr 99.8 9.6E-16 2.1E-20 146.1 28.3 235 146-451 179-428 (429)
205 KOG1354 Serine/threonine prote 99.8 4.4E-16 9.6E-21 132.3 22.5 308 124-467 25-431 (433)
206 KOG1523 Actin-related protein 99.7 2.7E-16 5.8E-21 132.4 19.4 247 170-452 11-261 (361)
207 PF02239 Cytochrom_D1: Cytochr 99.7 1.6E-14 3.5E-19 133.4 32.3 308 137-475 6-352 (369)
208 KOG1272 WD40-repeat-containing 99.7 2E-17 4.4E-22 145.7 12.4 273 124-467 129-406 (545)
209 KOG2394 WD40 protein DMR-N9 [G 99.7 6.5E-16 1.4E-20 138.8 22.1 279 125-476 124-458 (636)
210 KOG1963 WD40 repeat protein [G 99.7 1E-14 2.2E-19 138.9 30.4 302 127-474 163-491 (792)
211 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 145.5 24.0 214 190-470 183-401 (429)
212 KOG1310 WD40 repeat protein [G 99.7 9.9E-17 2.1E-21 144.3 14.8 247 164-436 45-311 (758)
213 KOG1188 WD40 repeat protein [G 99.7 1.4E-15 3.1E-20 129.2 18.8 261 116-427 62-345 (376)
214 KOG2139 WD40 repeat protein [G 99.7 2E-14 4.3E-19 123.3 25.8 318 124-471 98-432 (445)
215 PRK02889 tolB translocation pr 99.7 6.2E-15 1.3E-19 140.8 23.9 237 146-451 176-425 (427)
216 KOG2111 Uncharacterized conser 99.7 1.7E-13 3.7E-18 115.7 28.7 280 126-472 7-324 (346)
217 PRK05137 tolB translocation pr 99.7 3.4E-14 7.3E-19 136.4 28.1 234 146-451 182-433 (435)
218 KOG1517 Guanine nucleotide bin 99.7 5.2E-15 1.1E-19 143.2 22.0 251 171-475 1066-1338(1387)
219 PRK03629 tolB translocation pr 99.7 9.3E-14 2E-18 132.5 30.7 216 192-474 180-410 (429)
220 PRK04922 tolB translocation pr 99.7 1.1E-14 2.3E-19 139.7 24.0 234 146-450 184-432 (433)
221 KOG2139 WD40 repeat protein [G 99.7 9.1E-14 2E-18 119.3 25.2 250 122-427 138-430 (445)
222 KOG2315 Predicted translation 99.7 1.9E-13 4.2E-18 124.0 27.3 281 124-473 34-393 (566)
223 PRK05137 tolB translocation pr 99.6 2E-13 4.3E-18 131.1 26.9 217 191-474 182-416 (435)
224 KOG1334 WD40 repeat protein [G 99.6 3.4E-15 7.3E-20 132.7 13.4 265 165-473 138-427 (559)
225 KOG2394 WD40 protein DMR-N9 [G 99.6 4.6E-15 9.9E-20 133.4 14.1 187 133-325 182-383 (636)
226 KOG1272 WD40-repeat-containing 99.6 7.4E-16 1.6E-20 136.0 8.8 232 171-470 131-362 (545)
227 KOG0322 G-protein beta subunit 99.6 1.3E-14 2.8E-19 119.1 15.3 251 117-427 48-322 (323)
228 KOG4497 Uncharacterized conser 99.6 3.6E-13 7.9E-18 114.2 24.3 277 124-464 48-426 (447)
229 KOG1240 Protein kinase contain 99.6 1.1E-13 2.5E-18 136.2 24.3 262 164-475 1043-1339(1431)
230 KOG3881 Uncharacterized conser 99.6 1.2E-13 2.7E-18 119.7 20.3 249 171-475 57-325 (412)
231 PRK04922 tolB translocation pr 99.6 2E-13 4.3E-18 130.9 23.5 216 191-473 184-414 (433)
232 PRK02889 tolB translocation pr 99.6 2.6E-13 5.6E-18 129.7 24.0 194 229-470 197-403 (427)
233 PF02239 Cytochrom_D1: Cytochr 99.6 3.5E-12 7.7E-17 118.0 30.2 256 128-437 40-356 (369)
234 KOG0280 Uncharacterized conser 99.6 5.2E-13 1.1E-17 111.6 21.6 276 145-472 45-335 (339)
235 TIGR02800 propeller_TolB tol-p 99.6 1.3E-12 2.8E-17 125.8 27.7 233 146-449 170-417 (417)
236 KOG2111 Uncharacterized conser 99.6 5.2E-12 1.1E-16 106.9 26.7 178 146-349 75-259 (346)
237 PRK04792 tolB translocation pr 99.6 9E-13 1.9E-17 126.3 25.2 234 147-451 199-447 (448)
238 PRK00178 tolB translocation pr 99.6 3.3E-12 7.1E-17 123.0 28.0 234 147-451 180-428 (430)
239 KOG2321 WD40 repeat protein [G 99.6 3.3E-13 7.2E-18 122.6 19.0 259 167-479 49-311 (703)
240 KOG0974 WD-repeat protein WDR6 99.6 1.1E-12 2.4E-17 127.5 23.5 201 124-348 87-290 (967)
241 KOG1409 Uncharacterized conser 99.6 9.5E-14 2.1E-18 118.4 14.3 313 121-471 65-395 (404)
242 KOG3881 Uncharacterized conser 99.6 3E-13 6.5E-18 117.3 17.5 214 121-349 102-323 (412)
243 PF08662 eIF2A: Eukaryotic tra 99.6 4.6E-13 9.9E-18 112.4 18.4 132 293-472 38-181 (194)
244 COG5354 Uncharacterized protei 99.6 9.5E-12 2.1E-16 111.8 27.0 296 121-473 29-398 (561)
245 PF10282 Lactonase: Lactonase, 99.6 1.9E-11 4.1E-16 113.5 30.5 286 139-471 2-323 (345)
246 PF08662 eIF2A: Eukaryotic tra 99.5 8.3E-13 1.8E-17 110.9 18.9 150 128-300 9-179 (194)
247 PF10282 Lactonase: Lactonase, 99.5 8.2E-11 1.8E-15 109.2 33.2 283 126-448 38-345 (345)
248 KOG2314 Translation initiation 99.5 4.3E-12 9.2E-17 115.1 21.8 283 127-472 213-575 (698)
249 TIGR02800 propeller_TolB tol-p 99.5 8.8E-12 1.9E-16 120.0 25.9 193 229-471 191-398 (417)
250 PRK01029 tolB translocation pr 99.5 1.6E-11 3.4E-16 116.8 26.4 242 146-452 165-426 (428)
251 KOG1354 Serine/threonine prote 99.5 1.6E-12 3.4E-17 111.1 16.5 275 171-473 27-362 (433)
252 KOG0974 WD-repeat protein WDR6 99.5 1.9E-12 4.2E-17 125.8 17.6 200 171-429 89-289 (967)
253 TIGR02658 TTQ_MADH_Hv methylam 99.5 5.6E-10 1.2E-14 100.9 32.2 281 146-477 27-337 (352)
254 KOG4547 WD40 repeat-containing 99.5 1.4E-11 3.1E-16 112.9 21.6 194 133-347 2-221 (541)
255 PRK00178 tolB translocation pr 99.5 3.7E-11 8E-16 115.7 26.0 195 229-473 200-409 (430)
256 PRK04792 tolB translocation pr 99.5 4.2E-11 9.1E-16 114.9 25.9 194 229-472 219-427 (448)
257 KOG0280 Uncharacterized conser 99.5 2.8E-11 6E-16 101.4 20.4 205 124-347 69-285 (339)
258 KOG2041 WD40 repeat protein [G 99.4 3.1E-11 6.7E-16 112.9 22.0 289 124-472 14-339 (1189)
259 COG2706 3-carboxymuconate cycl 99.4 7.7E-10 1.7E-14 96.1 28.3 280 145-473 15-324 (346)
260 PRK01029 tolB translocation pr 99.4 8.1E-11 1.8E-15 112.0 24.5 210 115-347 175-404 (428)
261 KOG1064 RAVE (regulator of V-A 99.4 2E-12 4.3E-17 132.0 12.4 220 171-463 2210-2439(2439)
262 PF04762 IKI3: IKI3 family; I 99.4 9.2E-10 2E-14 113.2 31.9 328 122-473 73-459 (928)
263 KOG0309 Conserved WD40 repeat- 99.4 3.1E-12 6.7E-17 119.8 12.3 303 123-472 23-341 (1081)
264 COG5170 CDC55 Serine/threonine 99.4 2.2E-11 4.8E-16 102.8 15.6 269 124-427 26-366 (460)
265 COG2706 3-carboxymuconate cycl 99.4 6E-09 1.3E-13 90.7 30.6 288 121-449 36-345 (346)
266 TIGR02658 TTQ_MADH_Hv methylam 99.4 6.9E-09 1.5E-13 94.0 31.7 245 132-437 53-339 (352)
267 KOG4547 WD40 repeat-containing 99.4 4.2E-10 9.1E-15 103.4 23.7 196 178-429 2-221 (541)
268 COG4946 Uncharacterized protei 99.4 2.5E-09 5.4E-14 95.8 27.2 172 135-335 331-507 (668)
269 KOG1064 RAVE (regulator of V-A 99.3 1.5E-11 3.2E-16 125.8 13.8 193 121-350 2205-2402(2439)
270 TIGR03300 assembly_YfgL outer 99.3 5.3E-09 1.1E-13 99.1 29.0 263 135-474 64-342 (377)
271 KOG1409 Uncharacterized conser 99.3 1.6E-10 3.6E-15 99.0 16.2 250 165-475 20-275 (404)
272 KOG2315 Predicted translation 99.3 1.3E-09 2.9E-14 99.5 22.9 253 128-451 129-411 (566)
273 KOG2041 WD40 repeat protein [G 99.3 1.1E-10 2.5E-15 109.2 15.4 256 171-461 16-279 (1189)
274 PLN02919 haloacid dehalogenase 99.3 5.8E-09 1.3E-13 109.5 28.9 273 128-432 571-892 (1057)
275 PLN02919 haloacid dehalogenase 99.3 6.5E-09 1.4E-13 109.1 29.1 273 173-473 571-891 (1057)
276 COG4946 Uncharacterized protei 99.2 1.1E-08 2.4E-13 91.7 25.2 190 131-347 273-478 (668)
277 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.5E-13 95.0 28.5 261 135-467 104-376 (377)
278 KOG3914 WD repeat protein WDR4 99.2 2.4E-10 5.2E-15 100.2 12.9 163 127-312 65-231 (390)
279 KOG4190 Uncharacterized conser 99.2 1.4E-10 3.1E-15 105.4 11.3 285 118-466 729-1032(1034)
280 PF15492 Nbas_N: Neuroblastoma 99.2 5.7E-08 1.2E-12 82.2 25.1 237 175-474 3-263 (282)
281 PRK04043 tolB translocation pr 99.2 3.4E-08 7.3E-13 93.5 27.0 209 171-448 189-419 (419)
282 PF15492 Nbas_N: Neuroblastoma 99.2 6.6E-08 1.4E-12 81.8 24.1 150 130-291 3-168 (282)
283 KOG4532 WD40-like repeat conta 99.1 5.8E-09 1.3E-13 86.6 17.0 195 238-475 83-287 (344)
284 KOG4532 WD40-like repeat conta 99.1 2.5E-08 5.4E-13 83.0 20.5 195 136-349 84-285 (344)
285 COG5354 Uncharacterized protei 99.1 5.8E-08 1.3E-12 88.0 24.5 278 124-462 71-421 (561)
286 PRK04043 tolB translocation pr 99.1 7E-08 1.5E-12 91.4 26.7 195 229-475 189-405 (419)
287 KOG4714 Nucleoporin [Nuclear s 99.1 3.4E-09 7.3E-14 87.6 14.4 202 127-347 39-255 (319)
288 PF04762 IKI3: IKI3 family; I 99.1 2.7E-07 5.9E-12 95.3 31.7 284 125-469 22-378 (928)
289 KOG3914 WD repeat protein WDR4 99.1 2.9E-09 6.4E-14 93.5 13.4 161 172-353 65-230 (390)
290 KOG2314 Translation initiation 99.1 1.2E-07 2.7E-12 86.8 23.2 290 148-471 192-526 (698)
291 PF08450 SGL: SMP-30/Gluconola 99.0 7.1E-07 1.5E-11 79.0 28.0 223 174-458 4-243 (246)
292 KOG2695 WD40 repeat protein [G 99.0 1.3E-09 2.8E-14 93.6 9.5 177 233-449 217-401 (425)
293 KOG1912 WD40 repeat protein [G 99.0 6E-08 1.3E-12 92.3 20.5 289 127-474 18-368 (1062)
294 COG5170 CDC55 Serine/threonine 99.0 1.1E-08 2.4E-13 86.8 13.9 267 170-470 27-367 (460)
295 KOG0309 Conserved WD40 repeat- 99.0 2.9E-09 6.2E-14 100.4 11.5 276 112-429 54-340 (1081)
296 KOG1832 HIV-1 Vpr-binding prot 99.0 4.5E-10 9.7E-15 107.8 5.3 206 103-350 1083-1295(1516)
297 KOG4190 Uncharacterized conser 99.0 3.8E-09 8.3E-14 96.4 10.5 248 164-470 730-988 (1034)
298 KOG1912 WD40 repeat protein [G 99.0 1.5E-07 3.3E-12 89.7 21.0 271 171-471 17-305 (1062)
299 KOG4714 Nucleoporin [Nuclear s 98.9 7.4E-09 1.6E-13 85.6 10.1 171 112-300 77-254 (319)
300 PF13360 PQQ_2: PQQ-like domai 98.9 3.1E-06 6.7E-11 74.6 27.3 221 144-435 1-237 (238)
301 KOG0882 Cyclophilin-related pe 98.9 4.7E-08 1E-12 87.2 14.3 286 123-436 8-313 (558)
302 PF08450 SGL: SMP-30/Gluconola 98.9 1.2E-05 2.7E-10 71.1 29.9 197 129-347 4-214 (246)
303 PRK11138 outer membrane biogen 98.9 4.4E-06 9.5E-11 79.5 28.2 266 136-474 69-357 (394)
304 KOG2695 WD40 repeat protein [G 98.9 1.5E-08 3.3E-13 87.2 9.7 150 185-353 228-383 (425)
305 PF00400 WD40: WD domain, G-be 98.9 6.7E-09 1.4E-13 62.1 5.5 39 430-468 1-39 (39)
306 KOG3621 WD40 repeat-containing 98.9 1.2E-06 2.5E-11 83.1 22.8 153 123-289 32-188 (726)
307 KOG1275 PAB-dependent poly(A) 98.8 2.1E-07 4.6E-12 90.3 17.6 182 238-468 146-340 (1118)
308 PRK11138 outer membrane biogen 98.8 3.9E-06 8.4E-11 79.9 26.2 265 135-469 119-393 (394)
309 PF13360 PQQ_2: PQQ-like domai 98.8 1.6E-06 3.6E-11 76.4 22.0 224 190-474 2-234 (238)
310 PF07433 DUF1513: Protein of u 98.8 6.8E-06 1.5E-10 72.0 24.5 235 172-465 7-280 (305)
311 KOG1920 IkappaB kinase complex 98.8 1.4E-05 3.1E-10 80.6 28.0 218 123-347 67-323 (1265)
312 PF14583 Pectate_lyase22: Olig 98.7 2.8E-05 6.1E-10 70.5 26.6 198 129-347 40-273 (386)
313 KOG1920 IkappaB kinase complex 98.7 3E-06 6.6E-11 85.3 21.8 237 170-472 69-324 (1265)
314 KOG1275 PAB-dependent poly(A) 98.7 4.3E-07 9.4E-12 88.2 14.3 185 180-426 146-340 (1118)
315 KOG0882 Cyclophilin-related pe 98.7 7E-07 1.5E-11 79.9 14.6 259 168-473 8-308 (558)
316 KOG4649 PQQ (pyrrolo-quinoline 98.7 5.2E-05 1.1E-09 63.5 24.3 140 136-297 23-162 (354)
317 KOG1832 HIV-1 Vpr-binding prot 98.7 1.8E-08 3.9E-13 97.1 4.7 213 165-455 1097-1316(1516)
318 PF07433 DUF1513: Protein of u 98.7 9.7E-06 2.1E-10 71.1 21.0 198 115-341 47-280 (305)
319 KOG1645 RING-finger-containing 98.7 5E-06 1.1E-10 73.6 18.6 238 225-471 191-462 (463)
320 PF06433 Me-amine-dh_H: Methyl 98.6 2.7E-05 5.9E-10 69.2 22.9 278 146-474 17-324 (342)
321 PF00400 WD40: WD domain, G-be 98.6 3E-07 6.6E-12 54.7 6.4 39 259-298 1-39 (39)
322 KOG2114 Vacuolar assembly/sort 98.6 3.3E-05 7.2E-10 75.2 23.2 206 130-347 29-244 (933)
323 KOG2066 Vacuolar assembly/sort 98.6 6.7E-06 1.5E-10 79.3 18.5 140 135-300 82-233 (846)
324 PRK02888 nitrous-oxide reducta 98.6 7.2E-05 1.6E-09 72.1 25.2 286 139-458 69-449 (635)
325 PF06977 SdiA-regulated: SdiA- 98.5 6E-05 1.3E-09 65.3 22.4 212 117-343 14-247 (248)
326 PF11768 DUF3312: Protein of u 98.5 1.9E-06 4.2E-11 80.5 13.8 77 122-203 257-333 (545)
327 PF11768 DUF3312: Protein of u 98.5 8.6E-05 1.9E-09 69.8 24.0 112 230-348 208-331 (545)
328 PF06433 Me-amine-dh_H: Methyl 98.5 0.00034 7.5E-09 62.4 26.6 246 129-437 40-329 (342)
329 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.0001 2.2E-09 68.9 24.3 107 133-246 1-119 (353)
330 KOG3617 WD40 and TPR repeat-co 98.5 7.1E-06 1.5E-10 79.5 15.6 186 129-347 20-221 (1416)
331 KOG1645 RING-finger-containing 98.4 3.3E-05 7.1E-10 68.6 17.6 154 118-290 187-351 (463)
332 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00032 7E-09 58.9 22.2 143 181-346 23-165 (354)
333 COG0823 TolB Periplasmic compo 98.4 8.6E-05 1.9E-09 70.1 21.4 184 229-460 194-389 (425)
334 KOG2066 Vacuolar assembly/sort 98.4 3.2E-05 7E-10 74.8 18.4 146 171-349 41-190 (846)
335 cd00216 PQQ_DH Dehydrogenases 98.4 0.0008 1.7E-08 65.8 28.5 277 136-476 61-430 (488)
336 KOG1008 Uncharacterized conser 98.3 3E-07 6.6E-12 85.9 3.2 203 229-473 58-278 (783)
337 KOG2114 Vacuolar assembly/sort 98.3 0.00015 3.1E-09 71.0 20.4 202 234-475 30-248 (933)
338 KOG1008 Uncharacterized conser 98.3 3.8E-07 8.2E-12 85.3 1.9 205 125-348 57-277 (783)
339 COG0823 TolB Periplasmic compo 98.2 0.00025 5.4E-09 67.1 20.6 155 171-347 194-359 (425)
340 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0035 7.5E-08 59.6 27.9 194 128-347 32-247 (410)
341 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0006 1.3E-08 63.8 21.9 207 124-336 42-301 (353)
342 PF08596 Lgl_C: Lethal giant l 98.2 0.0017 3.7E-08 60.8 24.5 276 126-460 3-326 (395)
343 PF04053 Coatomer_WDAD: Coatom 98.2 0.0012 2.7E-08 62.7 23.7 182 123-342 31-219 (443)
344 PF02897 Peptidase_S9_N: Proly 98.1 0.009 2E-07 57.5 30.6 200 126-346 125-357 (414)
345 cd00216 PQQ_DH Dehydrogenases 98.1 0.0069 1.5E-07 59.4 27.7 259 137-438 111-434 (488)
346 KOG3621 WD40 repeat-containing 98.1 0.00012 2.6E-09 70.0 14.6 140 170-325 34-179 (726)
347 PF06977 SdiA-regulated: SdiA- 98.1 0.0051 1.1E-07 53.5 23.2 203 229-467 23-247 (248)
348 PF00780 CNH: CNH domain; Int 98.0 0.0027 5.8E-08 57.3 21.8 148 179-350 5-169 (275)
349 COG3391 Uncharacterized conser 98.0 0.014 3E-07 55.2 27.0 262 126-452 32-310 (381)
350 PF04053 Coatomer_WDAD: Coatom 98.0 0.004 8.6E-08 59.3 22.9 141 171-347 34-174 (443)
351 COG3391 Uncharacterized conser 98.0 0.017 3.7E-07 54.6 28.5 202 229-473 75-286 (381)
352 KOG3617 WD40 and TPR repeat-co 98.0 0.00016 3.4E-09 70.6 13.3 109 173-300 19-131 (1416)
353 PF03178 CPSF_A: CPSF A subuni 97.9 0.0061 1.3E-07 56.3 23.1 217 191-467 2-262 (321)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.029 6.3E-07 55.3 28.4 195 136-351 69-338 (527)
355 PF03178 CPSF_A: CPSF A subuni 97.9 0.015 3.2E-07 53.8 24.6 176 146-347 2-203 (321)
356 PRK02888 nitrous-oxide reducta 97.9 0.0016 3.5E-08 63.1 18.0 190 130-347 198-405 (635)
357 smart00320 WD40 WD40 repeats. 97.8 7.2E-05 1.6E-09 43.8 5.4 39 430-468 2-40 (40)
358 COG3204 Uncharacterized protei 97.8 0.0086 1.9E-07 51.9 19.3 175 118-300 79-263 (316)
359 PRK13616 lipoprotein LpqB; Pro 97.8 0.0031 6.8E-08 62.5 19.2 195 125-341 350-563 (591)
360 PF08553 VID27: VID27 cytoplas 97.8 0.025 5.4E-07 57.3 25.0 143 182-346 494-647 (794)
361 PF08596 Lgl_C: Lethal giant l 97.7 0.0036 7.8E-08 58.8 18.0 204 118-336 80-326 (395)
362 COG3490 Uncharacterized protei 97.7 0.0038 8.2E-08 53.6 15.6 193 131-345 120-347 (366)
363 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0066 1.4E-07 44.6 14.6 67 272-346 2-71 (111)
364 PF02897 Peptidase_S9_N: Proly 97.6 0.074 1.6E-06 51.2 29.2 248 171-473 125-407 (414)
365 COG3386 Gluconolactonase [Carb 97.6 0.05 1.1E-06 49.2 25.1 224 175-459 30-274 (307)
366 PF07995 GSDH: Glucose / Sorbo 97.6 0.058 1.3E-06 49.9 25.8 57 409-465 270-330 (331)
367 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.067 1.5E-06 50.3 29.4 34 315-348 306-339 (415)
368 KOG2444 WD40 repeat protein [G 97.6 0.00016 3.6E-09 59.6 6.1 69 409-477 113-184 (238)
369 PF14583 Pectate_lyase22: Olig 97.6 0.051 1.1E-06 49.9 22.1 250 152-461 16-303 (386)
370 PF04841 Vps16_N: Vps16, N-ter 97.6 0.08 1.7E-06 50.5 25.9 199 250-455 62-274 (410)
371 KOG4640 Anaphase-promoting com 97.6 0.00053 1.1E-08 64.9 9.7 84 119-206 15-99 (665)
372 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.014 3E-07 43.0 14.8 100 230-341 2-109 (111)
373 PF14870 PSII_BNR: Photosynthe 97.5 0.06 1.3E-06 48.4 28.0 279 124-467 16-301 (302)
374 KOG4441 Proteins containing BT 97.5 0.021 4.6E-07 56.7 20.6 230 180-472 284-548 (571)
375 KOG1897 Damage-specific DNA bi 97.5 0.16 3.4E-06 51.7 28.8 63 409-473 839-901 (1096)
376 PHA02713 hypothetical protein; 97.4 0.016 3.4E-07 57.7 18.2 63 409-473 463-536 (557)
377 KOG4441 Proteins containing BT 97.4 0.023 5.1E-07 56.4 18.9 191 133-347 282-500 (571)
378 smart00320 WD40 WD40 repeats. 97.4 0.00056 1.2E-08 39.7 5.0 37 308-344 4-40 (40)
379 KOG4640 Anaphase-promoting com 97.3 0.00084 1.8E-08 63.6 7.9 70 405-475 27-97 (665)
380 PHA02713 hypothetical protein; 97.3 0.017 3.6E-07 57.6 17.6 123 147-291 273-408 (557)
381 KOG2395 Protein involved in va 97.3 0.0023 5E-08 59.5 10.2 150 281-471 344-501 (644)
382 PF08553 VID27: VID27 cytoplas 97.3 0.0072 1.6E-07 61.0 14.1 150 280-470 491-647 (794)
383 KOG2395 Protein involved in va 97.2 0.016 3.5E-07 54.2 15.0 144 180-347 344-501 (644)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.26 5.7E-06 48.7 28.4 162 137-300 121-333 (527)
385 COG3204 Uncharacterized protei 97.2 0.15 3.2E-06 44.6 18.8 162 169-347 85-264 (316)
386 KOG1897 Damage-specific DNA bi 97.1 0.39 8.4E-06 49.0 26.5 186 139-347 687-899 (1096)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.25 5.4E-06 46.6 24.1 72 402-475 311-403 (415)
388 COG3386 Gluconolactonase [Carb 97.1 0.21 4.5E-06 45.3 22.2 196 131-346 31-243 (307)
389 PF10647 Gmad1: Lipoprotein Lp 97.1 0.18 4E-06 44.5 20.4 147 126-292 25-187 (253)
390 COG3490 Uncharacterized protei 97.1 0.17 3.6E-06 43.9 19.9 102 230-335 70-180 (366)
391 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0026 5.6E-08 38.9 5.6 31 124-154 11-41 (47)
392 KOG4499 Ca2+-binding protein R 97.0 0.058 1.3E-06 45.2 14.8 152 124-288 108-272 (310)
393 KOG4499 Ca2+-binding protein R 97.0 0.16 3.5E-06 42.6 17.5 44 407-450 220-263 (310)
394 PF15390 DUF4613: Domain of un 97.0 0.094 2E-06 50.2 17.8 160 120-300 15-186 (671)
395 KOG2079 Vacuolar assembly/sort 97.0 0.034 7.3E-07 56.7 15.7 103 180-299 98-202 (1206)
396 KOG2444 WD40 repeat protein [G 97.0 0.0028 6E-08 52.6 6.9 106 239-348 70-179 (238)
397 PF05694 SBP56: 56kDa selenium 97.0 0.24 5.2E-06 46.1 19.7 203 135-350 86-346 (461)
398 PRK13616 lipoprotein LpqB; Pro 96.9 0.079 1.7E-06 52.8 17.7 102 229-342 351-472 (591)
399 KOG2079 Vacuolar assembly/sort 96.9 0.009 1.9E-07 60.6 10.8 105 135-256 98-202 (1206)
400 PF00780 CNH: CNH domain; Int 96.8 0.37 8.1E-06 43.3 20.5 154 134-300 5-165 (275)
401 PF15390 DUF4613: Domain of un 96.7 0.12 2.7E-06 49.4 16.2 115 229-347 58-187 (671)
402 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0081 1.8E-07 36.7 5.6 29 228-256 12-40 (47)
403 PF05096 Glu_cyclase_2: Glutam 96.5 0.47 1E-05 41.4 23.9 185 230-459 47-249 (264)
404 PRK10115 protease 2; Provision 96.5 1.2 2.5E-05 45.9 32.2 197 125-345 127-343 (686)
405 PHA03098 kelch-like protein; P 96.5 0.16 3.4E-06 50.8 16.7 189 134-347 293-512 (534)
406 PF14727 PHTB1_N: PTHB1 N-term 96.4 0.92 2E-05 43.0 31.2 152 136-300 37-204 (418)
407 PF05096 Glu_cyclase_2: Glutam 96.2 0.73 1.6E-05 40.2 22.7 183 126-336 46-250 (264)
408 PF14727 PHTB1_N: PTHB1 N-term 96.2 0.71 1.5E-05 43.7 18.1 164 281-471 36-205 (418)
409 TIGR03074 PQQ_membr_DH membran 96.2 1.7 3.7E-05 44.9 22.2 226 239-475 194-482 (764)
410 PF05694 SBP56: 56kDa selenium 96.2 1.1 2.4E-05 41.9 18.8 186 133-334 138-391 (461)
411 PHA03098 kelch-like protein; P 95.9 0.69 1.5E-05 46.3 18.0 60 238-300 294-366 (534)
412 COG5276 Uncharacterized conser 95.8 1.2 2.5E-05 39.2 24.0 198 124-348 86-287 (370)
413 PRK10115 protease 2; Provision 95.8 2.8 6E-05 43.2 31.8 113 170-300 127-255 (686)
414 PRK13684 Ycf48-like protein; P 95.8 1.7 3.6E-05 40.4 18.4 155 124-299 172-330 (334)
415 KOG2377 Uncharacterized conser 95.7 0.24 5.3E-06 45.9 12.2 105 167-286 64-169 (657)
416 PF14870 PSII_BNR: Photosynthe 95.6 1.6 3.6E-05 39.4 25.4 189 126-337 63-253 (302)
417 PF10647 Gmad1: Lipoprotein Lp 95.6 1.5 3.3E-05 38.8 18.2 149 171-339 25-188 (253)
418 PHA02790 Kelch-like protein; P 95.6 1 2.2E-05 44.3 17.1 185 135-347 271-471 (480)
419 PF10168 Nup88: Nuclear pore c 95.4 3.7 7.9E-05 42.2 24.1 89 166-260 81-182 (717)
420 PF10313 DUF2415: Uncharacteri 95.4 0.096 2.1E-06 31.0 5.7 32 125-156 1-35 (43)
421 KOG2280 Vacuolar assembly/sort 95.3 0.38 8.2E-06 47.6 12.7 180 146-348 64-248 (829)
422 TIGR03074 PQQ_membr_DH membran 95.3 4.3 9.3E-05 42.1 22.3 119 181-313 194-353 (764)
423 PHA02790 Kelch-like protein; P 95.2 1.5 3.2E-05 43.1 17.1 103 180-300 271-384 (480)
424 PF12234 Rav1p_C: RAVE protein 95.2 0.57 1.2E-05 46.6 13.9 116 129-256 34-155 (631)
425 TIGR02604 Piru_Ver_Nterm putat 95.2 2.8 6E-05 39.6 23.1 142 171-335 15-202 (367)
426 PF12234 Rav1p_C: RAVE protein 95.2 0.92 2E-05 45.1 15.1 113 232-346 34-156 (631)
427 KOG3630 Nuclear pore complex, 95.2 0.35 7.5E-06 50.1 12.3 150 171-334 102-261 (1405)
428 KOG2377 Uncharacterized conser 95.2 0.56 1.2E-05 43.6 12.5 102 228-335 67-172 (657)
429 PF08728 CRT10: CRT10; InterP 94.9 2.2 4.9E-05 43.0 16.8 163 136-299 49-245 (717)
430 PF10168 Nup88: Nuclear pore c 94.8 5.6 0.00012 40.9 24.8 93 229-349 86-182 (717)
431 PF13449 Phytase-like: Esteras 94.7 3.5 7.6E-05 38.1 17.4 120 124-247 19-166 (326)
432 TIGR02604 Piru_Ver_Nterm putat 94.7 2.8 6E-05 39.6 16.7 41 420-461 164-204 (367)
433 PF10313 DUF2415: Uncharacteri 94.5 0.14 3.1E-06 30.3 4.8 31 270-300 1-33 (43)
434 KOG3630 Nuclear pore complex, 94.3 0.59 1.3E-05 48.5 11.6 115 229-347 102-229 (1405)
435 COG5167 VID27 Protein involved 94.0 3.4 7.3E-05 39.3 14.8 143 180-347 478-633 (776)
436 COG5167 VID27 Protein involved 93.9 1.9 4.2E-05 40.9 13.1 154 275-472 472-634 (776)
437 COG3823 Glutamine cyclotransfe 93.5 3.9 8.4E-05 34.1 15.5 178 238-458 55-247 (262)
438 PRK14131 N-acetylneuraminic ac 93.4 7.4 0.00016 36.9 19.7 40 249-290 189-230 (376)
439 KOG1900 Nuclear pore complex, 93.3 4.7 0.0001 43.1 16.1 34 314-347 240-273 (1311)
440 PF08728 CRT10: CRT10; InterP 93.3 8.9 0.00019 38.9 17.4 115 229-345 102-245 (717)
441 TIGR03118 PEPCTERM_chp_1 conse 93.2 5.9 0.00013 35.3 21.7 230 172-450 25-307 (336)
442 KOG1983 Tomosyn and related SN 92.9 10 0.00023 40.7 18.4 33 123-155 34-66 (993)
443 KOG2280 Vacuolar assembly/sort 92.8 12 0.00025 37.8 16.9 192 249-452 64-271 (829)
444 PF07569 Hira: TUP1-like enhan 92.6 0.85 1.8E-05 39.2 8.4 71 132-203 18-99 (219)
445 KOG1916 Nuclear protein, conta 92.6 0.29 6.3E-06 49.4 6.1 214 118-347 126-375 (1283)
446 PLN02193 nitrile-specifier pro 92.5 11 0.00025 36.9 17.8 149 135-300 175-351 (470)
447 PF07569 Hira: TUP1-like enhan 92.5 1.2 2.6E-05 38.3 9.3 83 177-263 18-101 (219)
448 TIGR03548 mutarot_permut cycli 92.3 9.3 0.0002 35.3 16.4 138 135-291 72-233 (323)
449 TIGR03118 PEPCTERM_chp_1 conse 92.3 8 0.00017 34.5 23.5 206 126-348 24-281 (336)
450 PRK13684 Ycf48-like protein; P 92.2 9.6 0.00021 35.4 28.8 278 124-469 45-330 (334)
451 KOG1983 Tomosyn and related SN 92.2 3.2 6.9E-05 44.5 13.7 33 229-261 37-69 (993)
452 KOG1916 Nuclear protein, conta 92.1 0.16 3.5E-06 51.0 3.8 114 226-346 131-265 (1283)
453 TIGR03547 muta_rot_YjhT mutatr 92.1 10 0.00023 35.4 18.7 41 249-291 168-210 (346)
454 PF14781 BBS2_N: Ciliary BBSom 92.1 4.5 9.8E-05 31.2 13.8 117 129-263 3-131 (136)
455 PLN02153 epithiospecifier prot 91.3 12 0.00027 34.8 18.7 114 135-262 32-172 (341)
456 TIGR02276 beta_rpt_yvtn 40-res 91.1 1.5 3.2E-05 25.8 6.1 40 408-448 1-41 (42)
457 PF12657 TFIIIC_delta: Transcr 91.0 1.8 4E-05 35.6 8.6 31 317-347 86-122 (173)
458 KOG2247 WD40 repeat-containing 90.9 0.03 6.5E-07 52.1 -2.2 145 172-340 37-182 (615)
459 PF14761 HPS3_N: Hermansky-Pud 90.9 8.1 0.00018 32.6 11.9 102 182-300 29-163 (215)
460 KOG2247 WD40 repeat-containing 90.8 0.038 8.2E-07 51.4 -1.7 141 128-291 38-179 (615)
461 PF14761 HPS3_N: Hermansky-Pud 90.6 9.6 0.00021 32.2 14.5 50 137-188 29-78 (215)
462 PLN02193 nitrile-specifier pro 90.5 19 0.00041 35.4 16.9 139 135-291 228-387 (470)
463 smart00036 CNH Domain found in 90.4 14 0.0003 33.8 24.0 59 180-257 12-73 (302)
464 PLN02153 epithiospecifier prot 90.4 15 0.00033 34.2 20.4 25 238-262 85-114 (341)
465 COG5276 Uncharacterized conser 90.4 12 0.00027 33.1 21.4 113 229-349 88-202 (370)
466 COG4257 Vgb Streptogramin lyas 90.2 12 0.00026 32.8 16.2 194 124-347 61-263 (353)
467 COG3823 Glutamine cyclotransfe 90.0 10 0.00023 31.7 12.5 52 238-289 185-248 (262)
468 PF12768 Rax2: Cortical protei 89.9 13 0.00029 33.2 13.4 93 191-300 16-123 (281)
469 KOG4460 Nuclear pore complex, 89.8 9.2 0.0002 36.7 12.5 88 169-261 103-202 (741)
470 TIGR03548 mutarot_permut cycli 89.6 17 0.00037 33.5 19.2 105 238-347 72-195 (323)
471 COG4257 Vgb Streptogramin lyas 89.5 14 0.0003 32.5 17.8 192 124-347 103-306 (353)
472 PF03022 MRJP: Major royal jel 89.0 17 0.00037 32.8 20.4 205 126-334 2-253 (287)
473 TIGR03547 muta_rot_YjhT mutatr 88.8 20 0.00044 33.4 17.2 22 135-156 63-95 (346)
474 PRK14131 N-acetylneuraminic ac 88.7 22 0.00048 33.7 18.2 53 238-291 84-149 (376)
475 PF14781 BBS2_N: Ciliary BBSom 88.3 10 0.00022 29.3 12.7 120 322-472 4-127 (136)
476 PF07676 PD40: WD40-like Beta 88.0 2 4.4E-05 24.8 4.9 29 123-151 7-38 (39)
477 KOG1900 Nuclear pore complex, 87.8 6.6 0.00014 42.1 11.3 38 438-475 240-277 (1311)
478 PF10214 Rrn6: RNA polymerase 87.6 41 0.00088 35.5 23.5 173 122-300 77-276 (765)
479 COG4590 ABC-type uncharacteriz 87.5 3.7 8.1E-05 38.4 8.4 164 170-351 221-391 (733)
480 PF07250 Glyoxal_oxid_N: Glyox 87.0 10 0.00022 33.0 10.5 126 131-268 73-208 (243)
481 PF05935 Arylsulfotrans: Aryls 87.0 33 0.00071 33.8 16.6 135 130-268 153-312 (477)
482 PLN00033 photosystem II stabil 87.0 29 0.00062 33.1 25.6 108 229-344 240-354 (398)
483 TIGR02276 beta_rpt_yvtn 40-res 86.3 4.8 0.0001 23.5 6.2 31 237-267 1-32 (42)
484 PF07676 PD40: WD40-like Beta 85.5 4.3 9.2E-05 23.4 5.4 32 436-467 4-38 (39)
485 PF11715 Nup160: Nucleoporin N 85.5 4.8 0.0001 40.4 9.0 74 134-207 156-256 (547)
486 PF13449 Phytase-like: Esteras 84.9 33 0.00071 31.8 16.9 155 171-333 21-231 (326)
487 PF11715 Nup160: Nucleoporin N 84.8 5.5 0.00012 40.0 9.1 87 179-265 156-256 (547)
488 PF12657 TFIIIC_delta: Transcr 84.8 7.2 0.00016 32.1 8.3 30 229-258 87-122 (173)
489 TIGR03606 non_repeat_PQQ dehyd 84.7 38 0.00082 32.8 14.0 125 309-462 22-167 (454)
490 PF12768 Rax2: Cortical protei 84.5 30 0.00065 31.1 14.1 119 145-278 15-145 (281)
491 PF08801 Nucleoporin_N: Nup133 84.3 38 0.00082 32.7 14.3 173 229-473 28-222 (422)
492 smart00564 PQQ beta-propeller 83.3 3.5 7.5E-05 22.6 4.1 26 411-436 7-32 (33)
493 KOG4460 Nuclear pore complex, 83.2 47 0.001 32.3 17.4 27 228-254 104-130 (741)
494 PF07250 Glyoxal_oxid_N: Glyox 83.1 31 0.00067 30.2 13.0 87 251-338 48-139 (243)
495 COG1770 PtrB Protease II [Amin 83.0 55 0.0012 32.9 26.1 202 126-348 130-350 (682)
496 KOG1520 Predicted alkaloid syn 81.8 37 0.00081 31.5 12.0 102 228-336 115-238 (376)
497 COG4590 ABC-type uncharacteriz 81.8 7.1 0.00015 36.7 7.5 167 119-300 215-386 (733)
498 KOG4659 Uncharacterized conser 80.7 95 0.0021 34.1 18.9 22 437-458 658-679 (1899)
499 PLN00033 photosystem II stabil 80.6 54 0.0012 31.3 32.2 60 405-467 334-396 (398)
500 PF02333 Phytase: Phytase; In 80.4 52 0.0011 30.9 22.8 152 179-347 66-238 (381)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-52 Score=354.99 Aligned_cols=297 Identities=25% Similarity=0.365 Sum_probs=262.7
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
....+.+|.++|.|++|+|+|+.||+|+.|.++|+||+.+... ....++|...|.|++|+|||+.|++|+.||+|++
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---ceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 3456789999999999999999999999999999999998733 3456889999999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-----CCCEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
||.++|+.... ...+|+..|++++|.| ..++|++++.||.|+|||+..+.++..+.+|+.
T Consensus 184 wdpktg~~~g~---------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 184 WDPKTGQQIGR---------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred ecCCCCCcccc---------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 99998876432 2347888999999987 567999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc-----------CCCC----------
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-----------GDGR---------- 329 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s-----------p~~~---------- 329 (491)
+|+|+.|- ...+|++|+.|++|++|+.. .+.....+.+|...|+.++.+ |.++
T Consensus 249 ~VTCvrwG--G~gliySgS~DrtIkvw~a~----dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 249 SVTCVRWG--GEGLIYSGSQDRTIKVWRAL----DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred ceEEEEEc--CCceEEecCCCceEEEEEcc----chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 99999994 56799999999999999987 788999999999999999876 3333
Q ss_pred ---------------EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 330 ---------------YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 330 ---------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
.|++|+.|.++.+|+..... +++..+.+|...
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------------------------------kpi~rmtgHq~l 369 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------------------------------KPITRMTGHQAL 369 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccc---------------------------------cchhhhhchhhh
Confidence 49999999999999976532 566777788743
Q ss_pred eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+.+..||||++++|+++.|..|++||.++|+.+..|++|-++|..++|+.|.++|++|+.|.++++|++.+...
T Consensus 370 ------Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 370 ------VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred ------eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 33447888999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q 011216 475 A 475 (491)
Q Consensus 475 ~ 475 (491)
.
T Consensus 444 ~ 444 (480)
T KOG0271|consen 444 K 444 (480)
T ss_pred c
Confidence 3
No 2
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-49 Score=325.97 Aligned_cols=296 Identities=22% Similarity=0.361 Sum_probs=262.9
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...|.+|.+.|+++.|++|+++|++++.||.+.|||.-+..+.+.+..... .|..++|+|.|+++++|+.|+...||
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~---WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS---WVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce---eEEEEEECCCCCeEEecCcCceeEEE
Confidence 478899999999999999999999999999999999988877666544333 79999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
++.+.......+... ...+|.+.+.|+.|.+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.
T Consensus 125 ~ls~~d~~g~~~v~r----------~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSR----------ELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred ecccccccccceeee----------eecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 998653332222221 234799999999999866 599999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
++|.+++.+++|+.|+..++||+| .+..++.+.+|...|+++.|.|+|.-+++|+.|+++++||+|.
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R----~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa--------- 260 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVR----SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA--------- 260 (343)
T ss_pred cCCCCCCeEEecccccceeeeecc----CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC---------
Confidence 986699999999999999999999 8899999999999999999999999999999999999999998
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
++.+..|........+.. .+||..|++|++|..|..+.+||.-.++.+..|
T Consensus 261 -------------------------D~~~a~ys~~~~~~gitS----v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 261 -------------------------DQELAVYSHDSIICGITS----VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred -------------------------CcEEeeeccCcccCCcee----EEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence 567777775554444444 456668999999999999999999999999999
Q ss_pred cCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 437 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
.+|.+.|.++..+|||..|+||++|.+++||.
T Consensus 312 ~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-50 Score=339.09 Aligned_cols=293 Identities=25% Similarity=0.395 Sum_probs=262.1
Q ss_pred CCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC-----CCceEEEEe
Q 011216 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-----DQRHLVYAS 188 (491)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-----~~~~l~~~~ 188 (491)
..+.....+|...|.|++|||||+.||+|+.||+|++||..+|+.+.. ...+|...|++++|.| ..++|++++
T Consensus 147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCccceeccc
Confidence 344567789999999999999999999999999999999999866655 4478888999999976 568999999
Q ss_pred cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc
Q 011216 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 268 (491)
.||.|+|||+..+.+..... ||+.+|+|++|--+| +|++|+.|++|++|+...|.+.+.+.+|
T Consensus 225 kDg~vrIWd~~~~~~~~~ls----------------gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGH 287 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLS----------------GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGH 287 (480)
T ss_pred CCCCEEEEEccCceEEEEec----------------cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhccc
Confidence 99999999999887755443 799999999998666 8999999999999999999999999999
Q ss_pred CCCeEEEEEec----------C-------------------------CCCEEEEEeCCCeEEEEeCccccCCCcceeeec
Q 011216 269 TSDVNTVCFGD----------E-------------------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 269 ~~~v~~i~~~~----------~-------------------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
...|+.++.+. + .+..+++|+.|.++.+|+.. ...+++..+.
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~rmt 364 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITRMT 364 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhhhh
Confidence 99999998871 1 23459999999999999975 3556888999
Q ss_pred cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce
Q 011216 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
+|..-|+.+.|+||++++|+++.|..|++||-++ ++.+.+|++|-
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t----------------------------------Gk~lasfRGHv- 409 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT----------------------------------GKFLASFRGHV- 409 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCC----------------------------------cchhhhhhhcc-
Confidence 9999999999999999999999999999999998 57788888886
Q ss_pred eeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
..++..+||.|.++|++|+.|.++++||+++.+....+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 410 -----~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 410 -----AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 3456668888999999999999999999999999999999999999999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-49 Score=336.92 Aligned_cols=285 Identities=23% Similarity=0.302 Sum_probs=257.3
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC--CceEEEEecCCeEEEEEC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~~~dg~i~iwd~ 198 (491)
-+-+.+|..+.||+|++.||||+.+|.++||+..+.. ......+|...|.++.|+|. +..|++|+.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~---~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN---LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc---eeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 3568899999999999999999999999999999873 33455789999999999997 569999999999999999
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEe
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (491)
++...+..+ .+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.
T Consensus 249 ~~e~~l~~l----------------~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 249 SQETPLQDL----------------EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred CCCcchhhh----------------hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEec
Confidence 886543332 2688899999999999999999999999999999999988889999999999997
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCc
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
++|.++++|+.|..-+|||+| ++..+..+.+|..+|.+|+|+|+|..||+|+.|++++|||++.
T Consensus 313 -~DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~----------- 376 (459)
T KOG0272|consen 313 -PDGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM----------- 376 (459)
T ss_pred -CCCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-----------
Confidence 899999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred ccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC
Q 011216 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 438 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 438 (491)
...+.++.+|....+- +.|.|. .|.+|++++.|++++||...+..+++.+.+
T Consensus 377 -----------------------r~~ly~ipAH~nlVS~--Vk~~p~---~g~fL~TasyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 377 -----------------------RSELYTIPAHSNLVSQ--VKYSPQ---EGYFLVTASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred -----------------------cccceecccccchhhh--eEeccc---CCeEEEEcccCcceeeecCCCcccchhhcC
Confidence 3456777788754433 233332 689999999999999999999999999999
Q ss_pred CCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 439 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 439 h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
|.+.|.++.+++|+++++|++.|.++++|.
T Consensus 429 He~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 429 HEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999996
No 5
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-43 Score=301.34 Aligned_cols=306 Identities=26% Similarity=0.401 Sum_probs=262.2
Q ss_pred cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE
Q 011216 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 187 (491)
..+.+|....+.++.|.++|+-+.||++|+|||+++.|.+..+|.+.....+....+..+|..+|..+.||||.++|++|
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec
Confidence 34667888889999999999999999999999999999999999987765666666778888999999999999999999
Q ss_pred ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
+.+..+.+||+.+|........ +|...+.+++|.|||..+++|+.|+++..||++... .....+
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g 351 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG 351 (519)
T ss_pred CchHheeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc
Confidence 9999999999999987655432 234589999999999999999999999999997654 333333
Q ss_pred c-CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 268 H-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 268 ~-~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
- ...|.+++.. ++|.++++.+.|..|++++.. ...... +.....+|+++..|.+++++++.-.+..+++||+.
T Consensus 352 vr~~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e----~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 352 VRDPKVHDLAIT-YDGKYVLLVTVDKKIRLYNRE----ARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cccceeEEEEEc-CCCcEEEEEecccceeeechh----hhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 2 3568999997 889999999999999999985 222222 33456789999999999999999999999999998
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
. ...++.+.||.....+++.+|.-- +..++++|++|+.|+||+
T Consensus 426 e----------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~---~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 426 E----------------------------------NKLVRKYFGHKQGHFIIRSCFGGG---NDKFIASGSEDSKVYIWH 468 (519)
T ss_pred h----------------------------------hhHHHHhhcccccceEEEeccCCC---CcceEEecCCCceEEEEE
Confidence 6 366778888887777777777654 668999999999999999
Q ss_pred CCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCC
Q 011216 427 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~ 472 (491)
..+|+++..+.+|...|++++|+|..+ ++|++|+||+|+||.....
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999999776 8999999999999987654
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-42 Score=282.75 Aligned_cols=295 Identities=25% Similarity=0.390 Sum_probs=253.7
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+.+|++.|+++.|+|+|.+||+|+.|..|.+|++... .......++|.++|..+.|.+|++.|++++.|.+|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4567899999999999999999999999999999997654 22334456999999999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
|+++|+.....+ +|..-|.++.-+.-|. ++.+++.|+++++||+++...++.+ .....++++
T Consensus 118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv 180 (338)
T KOG0265|consen 118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAV 180 (338)
T ss_pred ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEE
Confidence 999999866554 4666788887554444 5667888999999999998887766 456789999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
.|. ..+..+.+|+-|+.|++||++ .......+.+|.++|+.+..+|+|.++.+.+.|.++++||++....
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r----~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----- 250 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLR----KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----- 250 (338)
T ss_pred Eec-ccccceeeccccCceeeeccc----cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC-----
Confidence 998 778889999999999999999 8889999999999999999999999999999999999999987432
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccc--eeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 433 (491)
....+..+.++. .....+.| +|||++..+.+|+.|..+++||..+...+
T Consensus 251 -------------------------~~R~v~if~g~~hnfeknlL~c----swsp~~~~i~ags~dr~vyvwd~~~r~~l 301 (338)
T KOG0265|consen 251 -------------------------SQRCVKIFQGHIHNFEKNLLKC----SWSPNGTKITAGSADRFVYVWDTTSRRIL 301 (338)
T ss_pred -------------------------CCceEEEeecchhhhhhhccee----eccCCCCccccccccceEEEeecccccEE
Confidence 235577777764 33444555 56668999999999999999999998999
Q ss_pred EEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 434 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
..+.+|.+.|++++|+|..++|.+++.|.+|++=++
T Consensus 302 yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 302 YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 999999999999999999999999999999987443
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-41 Score=273.12 Aligned_cols=291 Identities=20% Similarity=0.269 Sum_probs=238.6
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE--EEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
-.+.+|++.|..++..+.+ ..+++++.|.++.+|++...... .......+|...|..+..++||++.++++.|++++
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 3578999999999999874 67889999999999998764211 11223456777999999999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec-cCCCeE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN 273 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~ 273 (491)
+||+.+++....+. ||...|.+++|++|.+.+++|+.|.+|.+|++........... +.+.|+
T Consensus 89 lWDl~~g~~t~~f~----------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 89 LWDLATGESTRRFV----------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEEecCCcEEEEEE----------------ecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 99999986544433 6888999999999999999999999999999977655443333 378999
Q ss_pred EEEEecCC-CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 274 TVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 274 ~i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
|+.|+|.. +-+|++++.|++|++||++ ..+....+.+|.+.++.+++||||...++|+.||.+.+||++..
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~----~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---- 224 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLR----NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---- 224 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccC----CcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC----
Confidence 99999654 6799999999999999998 77888889999999999999999999999999999999999973
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
+.+..+.+.. .+.+.+|+|+..+|+.+... .|+|||+.++..
T Consensus 225 ------------------------------k~lysl~a~~-------~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 225 ------------------------------KNLYSLEAFD-------IVNSLCFSPNRYWLCAATAT-SIKIWDLESKAV 266 (315)
T ss_pred ------------------------------ceeEeccCCC-------eEeeEEecCCceeEeeccCC-ceEEEeccchhh
Confidence 3344444333 23444677777777766654 499999999988
Q ss_pred EEEecC----C-----CCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 433 VAALKY----H-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 433 ~~~~~~----h-----~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+..++. . .-...+++|++||..|++|-.|+.|++|.+.
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877652 1 2235678999999999999999999999875
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-40 Score=265.68 Aligned_cols=282 Identities=22% Similarity=0.333 Sum_probs=232.8
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (491)
-+|++++.|.+||+|...+|.+...+... ...|+.+.+.|+++.|++++ ...|++||+.+++...+..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~---dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~------- 79 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHP---DSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATF------- 79 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecC---ccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEE-------
Confidence 47999999999999999999877765433 33799999999999999887 46799999998876544332
Q ss_pred ccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEE
Q 011216 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (491)
Q Consensus 217 ~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 296 (491)
.+|+..|+++.|..+|+.+++|++||+++|||++...+.+.+ .|..+|+++..+ |+...|++|..+|.|++
T Consensus 80 -------e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlh-pnQteLis~dqsg~irv 150 (311)
T KOG0315|consen 80 -------EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLH-PNQTELISGDQSGNIRV 150 (311)
T ss_pred -------eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEec-CCcceEEeecCCCcEEE
Confidence 257779999999999999999999999999999996665544 788999999998 67778899999999999
Q ss_pred EeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcc
Q 011216 297 WDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
||+. .......+ ......|.++...|||.+++.+...|.+++|++-.......
T Consensus 151 WDl~----~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~---------------------- 204 (311)
T KOG0315|consen 151 WDLG----ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE---------------------- 204 (311)
T ss_pred EEcc----CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc----------------------
Confidence 9997 43333333 33446899999999999999999999999999977332211
Q ss_pred cccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-cEEEEecCCCCCeeeeEecCCCCe
Q 011216 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPM 454 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~ 454 (491)
-.++..++.|. ..+.+| .+|||+++||+++.|.+++||+..+. +....+++|...+.+++||.||.|
T Consensus 205 ------l~P~~k~~ah~--~~il~C----~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Y 272 (311)
T KOG0315|consen 205 ------LEPVHKFQAHN--GHILRC----LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEY 272 (311)
T ss_pred ------ceEhhheeccc--ceEEEE----EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccE
Confidence 14555666666 344455 45669999999999999999999887 666778899999999999999999
Q ss_pred EEEEECCCcEEEecCCCCCCCC
Q 011216 455 LVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 455 l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
|+|++.|+.+++|++..+++..
T Consensus 273 lvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 273 LVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred EEecCCCCceeecccccCceee
Confidence 9999999999999999987543
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-40 Score=289.32 Aligned_cols=305 Identities=21% Similarity=0.301 Sum_probs=251.2
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEE------e----eccCCceeEEEeEeCC
Q 011216 112 LPVNGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG-WKIQKD------I----LAKSLRWTVTDTSLSP 179 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~-~~~~~~------~----~~~~~~~~v~~l~~sp 179 (491)
+|......+. |+.+|.+++|+|-.. +|++|+.|.+.++|++... ...... . ........|++++|+.
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 4544445555 999999999999776 8999999999999999751 111110 0 1111234799999999
Q ss_pred CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
+|..|++|+.||.++||+........+. .|+++|.++.|+.+|.+|++++.|+++.+||..++
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~-----------------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLG-----------------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhh-----------------ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 9999999999999999998765543322 37889999999999999999999999999999999
Q ss_pred eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCc
Q 011216 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~ 339 (491)
.....+.-|..+-..+.|- +...|++++.|+.|+|+.+. ...++.++.+|.+.|.++.|.|.|.+|++++.|++
T Consensus 309 ~~~q~f~~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred eEEEeeeeccCCccceEEe--cCceEeecCCCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 9999998898887889995 56689999999999999997 88899999999999999999999999999999999
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc----cc-CCCcEEE
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV----YS-TGQKYIY 414 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~s-~~~~~l~ 414 (491)
++||.... ...+..+.+|.. .+....|+|. .. ..+..++
T Consensus 383 lkiWs~~~----------------------------------~~~~~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 383 LKIWSMGQ----------------------------------SNSVHDLQAHSK--EIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred eEeeecCC----------------------------------Ccchhhhhhhcc--ceeeEeecCCCCccCCCcCCceEE
Confidence 99999776 244455555552 2222233332 11 1356899
Q ss_pred EEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 415 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
+++.|++|++||+..+.+++.|..|..+|.+++|+|+|++||+|+.||.|++|+...+....
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 99999999999999999999999999999999999999999999999999999998876443
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.3e-40 Score=265.63 Aligned_cols=292 Identities=22% Similarity=0.333 Sum_probs=238.1
Q ss_pred CccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 117 PWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
.+.+.+|.+++..++|+|- |..||+|+.|+.|++|+...+ ....+.....+|...|+.++|+|.|++|++++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4567899999999999998 899999999999999999843 22233344458888999999999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC---eeeEEEeccCCC
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSD 271 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~ 271 (491)
||.-..++......+ .||...|.|++|+++|++||++++|..|.||.+..+ ++...+..|...
T Consensus 87 Iw~k~~~efecv~~l--------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 87 IWKKEDGEFECVATL--------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred EeecCCCceeEEeee--------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 999877665443322 368889999999999999999999999999999754 456778899999
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
|..+.|+ |...+|++++.|.+|++|+-.. .....++..+.+|...|.+++|+|.|..|++++.|++++||.....-..
T Consensus 153 VK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~ 230 (312)
T KOG0645|consen 153 VKHVIWH-PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG 230 (312)
T ss_pred ccEEEEc-CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcch
Confidence 9999998 7778999999999999998653 3466789999999999999999999999999999999999986531100
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG- 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~- 430 (491)
-|. +..+...|. ...|++++.|+.|++|.-...
T Consensus 231 --------------------------------------~~s------r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 231 --------------------------------------MHS------RALYDVPWD--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred --------------------------------------hcc------cceEeeeec--ccceEeccCCCEEEEEEecCCC
Confidence 011 111222333 457999999999999986542
Q ss_pred -----cEEE-EecCCCCCeeeeEecCC-CCeEEEEECCCcEEEecCC
Q 011216 431 -----EQVA-ALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 431 -----~~~~-~~~~h~~~v~~~~~s~~-~~~l~s~~~Dg~i~iw~~~ 470 (491)
+.+. .-..|...|++++|.|. ...|++++.||.|++|.+.
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1111 23478899999999995 5699999999999999874
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.2e-42 Score=292.60 Aligned_cols=290 Identities=22% Similarity=0.381 Sum_probs=251.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
..+.+|..+.|.|+|+.|++|+..|.+.+|+... .........|..+|+++.|++++.++++|+.+|.|++|+..-.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 3467899999999999999999999999999743 2333455788899999999999999999999999999997655
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (491)
....... .|...|.+++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+ |.
T Consensus 171 nVk~~~a----------------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P~ 233 (464)
T KOG0284|consen 171 NVKIIQA----------------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-PT 233 (464)
T ss_pred hhHHhhH----------------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC-Cc
Confidence 4432222 244689999999999999999999999999999999888999999999999998 67
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccc
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
..+|++|+.|..|++||.+ ++.++..+.+|...|..+.|+|++++|++++.|..++++|++++
T Consensus 234 kgLiasgskDnlVKlWDpr----Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------------- 296 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPR----SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------------- 296 (464)
T ss_pred cceeEEccCCceeEeecCC----CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-------------
Confidence 7799999999999999999 99999999999999999999999999999999999999999974
Q ss_pred eeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec-CCC
Q 011216 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT 440 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~ 440 (491)
+.+..+++|. ..+....|+|. ...+|.+|+.||.|..|.+...+++..+. +|.
T Consensus 297 ---------------------kEl~~~r~Hk--kdv~~~~WhP~---~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd 350 (464)
T KOG0284|consen 297 ---------------------KELFTYRGHK--KDVTSLTWHPL---NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHD 350 (464)
T ss_pred ---------------------HHHHHhhcch--hhheeeccccc---cccceeeccCCCceEEEeccccccccCCCcccc
Confidence 4566777777 33444556665 56789999999999999998677776664 899
Q ss_pred CCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 441 ~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
..|++++|+|-|.+|++|+.|.++++|.-....+
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d 384 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD 384 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence 9999999999999999999999999998665443
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-41 Score=297.68 Aligned_cols=298 Identities=21% Similarity=0.365 Sum_probs=255.8
Q ss_pred ccCCCCCccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeCCCCceEEEEe
Q 011216 111 YLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 188 (491)
++|.+....+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +.++ ....+|..+|.+++|+++|..+++++
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l---rtf~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL---RTFKGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee---hhhhcchhhhhhhhccccCCeeeeee
Confidence 557777788999999999999999 899999999999999999987 3333 35578899999999999999999999
Q ss_pred cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEEec
Q 011216 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
.|+.|++||+++|++...+.... .++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..
T Consensus 278 fD~~lKlwDtETG~~~~~f~~~~-----------------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHLDK-----------------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred cceeeeeeccccceEEEEEecCC-----------------CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 99999999999999877665443 68999999988 8899999999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
|-+.|..+.|- +++..+++.+.|++++||+.+ ...++... ..+.....++..+|++++++.-+.|+.|.++.+.
T Consensus 341 hLg~i~~i~F~-~~g~rFissSDdks~riWe~~----~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 341 HLGAILDITFV-DEGRRFISSSDDKSVRIWENR----IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred hhhheeeeEEc-cCCceEeeeccCccEEEEEcC----CCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 99999999998 889999999999999999987 33333322 2233456689999999999999999999999865
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
..-. ...-..+++|......+.+ .|||||.+|++|+.||.+.+||
T Consensus 416 ~~~r-------------------------------~nkkK~feGh~vaGys~~v----~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 416 PPFR-------------------------------LNKKKRFEGHSVAGYSCQV----DFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cccc-------------------------------cCHhhhhcceeccCceeeE----EEcCCCCeEEeecCCccEEEee
Confidence 4221 1334567777765544444 5677999999999999999999
Q ss_pred CCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEec
Q 011216 427 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWE 468 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~ 468 (491)
.++-+.+..+++|.+++..+.|+|... .+||+++||.|++|+
T Consensus 461 wkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999765 899999999999996
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-41 Score=293.34 Aligned_cols=250 Identities=22% Similarity=0.322 Sum_probs=224.9
Q ss_pred CCCCCccccCCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC
Q 011216 113 PVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (491)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~d--g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 190 (491)
..+..+.+.+|.+.|.++.|+|. +..+|+|+.||++++|++++...+. ...+|...|..++|+|+|++|++++.|
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~~L~TasfD 282 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGKFLGTASFD 282 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCceeeecccc
Confidence 34556788999999999999997 5689999999999999999864443 456788899999999999999999999
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
.+-++||+.++...... .||+.+|.+++|.+||..+++|+.|..-+|||+++++++..+.+|..
T Consensus 283 ~tWRlWD~~tk~ElL~Q----------------EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k 346 (459)
T KOG0272|consen 283 STWRLWDLETKSELLLQ----------------EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK 346 (459)
T ss_pred cchhhcccccchhhHhh----------------cccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccc
Confidence 99999999998764433 37999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCC
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
+|.+++|+ |+|..|+||+.|++++|||++ ....+..+.+|..-|+.|.|+| .|.+|++++.|++++||..++
T Consensus 347 ~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR----~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~-- 419 (459)
T KOG0272|consen 347 EILSVAFS-PNGYHLATGSSDNTCKVWDLR----MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT-- 419 (459)
T ss_pred ceeeEeEC-CCceEEeecCCCCcEEEeeec----ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCC--
Confidence 99999998 899999999999999999999 7777999999999999999999 789999999999999999888
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
.++++.+.||... +++..+++|+.++++++.|.++++|.
T Consensus 420 --------------------------------~~~~ksLaGHe~k------V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 420 --------------------------------WSPLKSLAGHEGK------VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred --------------------------------cccchhhcCCccc------eEEEEeccCCceEEEeccCceeeecc
Confidence 4678888888832 34557888999999999999999995
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-40 Score=278.77 Aligned_cols=292 Identities=23% Similarity=0.289 Sum_probs=262.5
Q ss_pred CCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeE
Q 011216 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (491)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i 193 (491)
.+.++.+.+|..+|+.+-|+|+-.++++++.|++|++||..+++. ....++|...+.+++|+..|++|++++.|-.+
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---ERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh---hhhhhccccceeEEEEecCccEEEecCCccch
Confidence 366788999999999999999999999999999999999999855 33567888899999999999999999999999
Q ss_pred EEEECCCC-ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 194 HIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 194 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
++||.++. ++... ..+|...|.++.|-|.|.++++++.|.+|+.|++.++-++.++.+|...|
T Consensus 175 ~LWd~~~~~~c~ks----------------~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKS----------------LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV 238 (406)
T ss_pred hheeHHHHHHHHHH----------------hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence 99998763 11111 12577799999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC---------------CCEEEEeeCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKD 337 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---------------~~~l~~~~~d 337 (491)
..+..+ .|+.++++++.|.+|++|-+. ...+...+..|.-+|.+++|.|. ++++.+++.|
T Consensus 239 r~v~v~-~DGti~As~s~dqtl~vW~~~----t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 239 RMVRVN-QDGTIIASCSNDQTLRVWVVA----TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred EEEEec-CCeeEEEecCCCceEEEEEec----cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 999998 899999999999999999987 77778889999999999999763 2589999999
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
++|++||+.+ +..+.++.+|... +...+|+|.|+||+++.
T Consensus 314 ktIk~wdv~t----------------------------------g~cL~tL~ghdnw------Vr~~af~p~Gkyi~Sca 353 (406)
T KOG0295|consen 314 KTIKIWDVST----------------------------------GMCLFTLVGHDNW------VRGVAFSPGGKYILSCA 353 (406)
T ss_pred ceEEEEeccC----------------------------------CeEEEEEecccce------eeeeEEcCCCeEEEEEe
Confidence 9999999998 5788899999843 33447888999999999
Q ss_pred cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 418 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
.|+++++||++++++...+..|..-|+++.|+.+..+++||+-|-++++|+-
T Consensus 354 DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 354 DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999999974
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=308.14 Aligned_cols=290 Identities=33% Similarity=0.531 Sum_probs=253.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC-CC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GS 200 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~-~~ 200 (491)
.|...|.|+.|+++|++|++++.++.+++|+...... .......+|...|.+++|+|+++++++++.|++|+|||+ ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3488999999999999999999999999999966642 122233678889999999999999999999999999999 33
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
+....... +|...|++++|+|+++++++|+.|++|+|||++++++...+.+|...|++++|+ +
T Consensus 236 ~~~~~~l~----------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~ 298 (456)
T KOG0266|consen 236 GRNLKTLK----------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-P 298 (456)
T ss_pred CeEEEEec----------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-C
Confidence 34433332 688899999999999999999999999999999999999999999999999997 8
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCc--ceeeecccccc--EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~--i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
++++|++++.|+.|++||+. .+. +...+.++... ++++.|+|++.++++++.|+.+++||++.
T Consensus 299 d~~~l~s~s~d~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~--------- 365 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLE----TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS--------- 365 (456)
T ss_pred CCCEEEEcCCCccEEEEECC----CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---------
Confidence 99999999999999999997 555 45566665555 99999999999999999999999999997
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
...+..+.+|... ..+.+++..++++.++++|+.|+.|++||+.++..+..+
T Consensus 366 -------------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 366 -------------------------GKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred -------------------------CcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 3566777777654 266778888999999999999999999999999999999
Q ss_pred cCC-CCCeeeeEecCCCCeEEEEE--CCCcEEEecCC
Q 011216 437 KYH-TSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 470 (491)
Q Consensus 437 ~~h-~~~v~~~~~s~~~~~l~s~~--~Dg~i~iw~~~ 470 (491)
.+| ...+..++|+|..+++++++ .|+.+++|...
T Consensus 418 ~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 418 EGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999 89999999999999999998 78999999865
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-39 Score=281.55 Aligned_cols=280 Identities=20% Similarity=0.348 Sum_probs=247.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
...|++++|+.+|.+||+|+.||.+++|+...+ .......|+++|.++.|+.+|.||++++.|+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~----l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN----LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch----hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 467999999999999999999999999998764 3345678999999999999999999999999999999999887
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
...+.+ |..+-.++.|-.+. .+++.+.|+.|+|+.+....++.++.+|.+.|.++.|+ +.+.
T Consensus 311 ~q~f~~----------------~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~ 372 (524)
T KOG0273|consen 311 KQQFEF----------------HSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGS 372 (524)
T ss_pred EEeeee----------------ccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCc
Confidence 665543 33344678887554 59999999999999999999999999999999999997 8899
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC---------CEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---------RYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+|++++.|++++||... .......+.+|...|..+.|+|+| ..+++++.|++|++||+..
T Consensus 373 LLaS~SdD~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~------- 441 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES------- 441 (524)
T ss_pred eEEEecCCCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC-------
Confidence 99999999999999987 778888999999999999999965 4689999999999999988
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
+.++..+..|.. .+++.+|||+|+|+|+|+.||.|.+|++++++.++
T Consensus 442 ---------------------------gv~i~~f~kH~~------pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 442 ---------------------------GVPIHTLMKHQE------PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred ---------------------------CceeEeeccCCC------ceEEEEecCCCcEEEecCCCCeeEeccccchheeE
Confidence 467778877773 34566889999999999999999999999999999
Q ss_pred EecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.+.+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 489 s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 489 SYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9874 4569999999999999999999999999875
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-40 Score=307.05 Aligned_cols=289 Identities=24% Similarity=0.392 Sum_probs=239.6
Q ss_pred cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec
Q 011216 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 189 (491)
..+|.-....+..-...++|..|++|++.||.|..|..|++|.+... ++.+. +. ..+- ..+=+.+.
T Consensus 364 ~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~l---k~-------~~~l---~~~d~~sa 429 (707)
T KOG0263|consen 364 NSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKL---KD-------ASDL---SNIDTESA 429 (707)
T ss_pred CCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccc---cc-------hhhh---cccccccc
Confidence 44455555666777788999999999999999999999999998753 22211 11 1111 11112333
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
|-.+.+.|-.++..... ..||.++|+.+.|+|+.++|++++.|++|++|.+.+..++..+.+|.
T Consensus 430 d~~~~~~D~~~~~~~~~----------------L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~ 493 (707)
T KOG0263|consen 430 DVDVDMLDDDSSGTSRT----------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL 493 (707)
T ss_pred chhhhhccccCCceeEE----------------eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC
Confidence 33344444433222111 23799999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
.+|.++.|+ |.|.+|++++.|++.++|... ...+++.+.+|...|.|+.|+|+..|+++|+.|.++++||+.+
T Consensus 494 ~PVwdV~F~-P~GyYFatas~D~tArLWs~d----~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-- 566 (707)
T KOG0263|consen 494 APVWDVQFA-PRGYYFATASHDQTARLWSTD----HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-- 566 (707)
T ss_pred cceeeEEec-CCceEEEecCCCceeeeeecc----cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC--
Confidence 999999998 889999999999999999987 7889999999999999999999999999999999999999998
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
+..++.|.||..... +++|||+|++|++|+.||.|.+||+.+
T Consensus 567 --------------------------------G~~VRiF~GH~~~V~------al~~Sp~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 567 --------------------------------GNSVRIFTGHKGPVT------ALAFSPCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred --------------------------------CcEEEEecCCCCceE------EEEEcCCCceEeecccCCcEEEEEcCC
Confidence 578999999884333 336777999999999999999999999
Q ss_pred ccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 430 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
++++..+.+|.+.|.++.|+.||..||+|+.|.+|++||+....
T Consensus 609 ~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 609 GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999999999999999999999999987644
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-38 Score=266.74 Aligned_cols=292 Identities=17% Similarity=0.241 Sum_probs=248.8
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
+....+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++... ....+|-..|..+++|+--.||++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk---ltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK---LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE---EeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 334566899999999999999999999999999999999998332 34567888999999999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
.||++..+.++... ||-..|+|++.+|.-+.|++|+.|.+++|||+++...+..+.+|..+|..
T Consensus 219 CwDLe~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYH----------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred EEechhhhhHHHhc----------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence 99999888765443 78889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+.+.|. +-.+++|+.|++|++||++ .++....+..|...+.+++.+|....+++++.|. |+-|++..+
T Consensus 283 V~~~~~-dpqvit~S~D~tvrlWDl~----agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g------ 350 (460)
T KOG0285|consen 283 VMCQPT-DPQVITGSHDSTVRLWDLR----AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG------ 350 (460)
T ss_pred EEeecC-CCceEEecCCceEEEeeec----cCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCcc------
Confidence 999844 4568899999999999999 8899999999999999999999999999998885 899998763
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
..+..+.+|......+. .. ...++++|+.+|.+.+||.++|-..+
T Consensus 351 ----------------------------~f~~nlsgh~~iintl~------~n-sD~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 351 ----------------------------EFLQNLSGHNAIINTLS------VN-SDGVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred ----------------------------chhhccccccceeeeee------ec-cCceEEEcCCceEEEEEecCcCcccc
Confidence 44455666664333322 11 34689999999999999999986554
Q ss_pred Eec--------CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 435 ALK--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 435 ~~~--------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.++ .....|.+.+|...|..|+||..|.+|++|+-...
T Consensus 396 ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 396 RGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 442 12456899999999999999999999999986543
No 19
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-37 Score=272.21 Aligned_cols=345 Identities=19% Similarity=0.274 Sum_probs=262.5
Q ss_pred cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec
Q 011216 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 189 (491)
.-.|-+....+..|..-|+|+.|+|||+++|+++.||+|.+||-.+++.+..+.....|.+.|.+++|+||++.+++++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 33454555667889999999999999999999999999999999999888887777899999999999999999999999
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
|.+++|||+.+.++...+.+....+. ....+.|. +..|++.+.+|.|.+++......+..+.+|.
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~d-------------qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVED-------------QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhc-------------eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 99999999999988776665443221 34456665 5579999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
..|+++..+ +++.+|++|+.||.|.-||.. .+..-... .+|...|.+++.+..+ .+++++.|.++++.++...
T Consensus 321 K~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~----~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 321 KSITALTVS-PDGKTIYSGSYDGHINSWDSG----SGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cceeEEEEc-CCCCEEEeeccCceEEEEecC----CccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccC
Confidence 999999998 778999999999999999986 33333222 5688889888887644 4677778888888876432
Q ss_pred CCccc-----------c---cc-----------------C----cccceeeceeecCCCCcccccCC-CCCeeEEEc--c
Q 011216 349 SSNAS-----------C---NL-----------------G----FRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK--G 390 (491)
Q Consensus 349 ~~~~~-----------~---~~-----------------~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~ 390 (491)
..... . .. . ..........+...|+...++.. .+..+..+. +
T Consensus 395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 11100 0 00 0 01122334455556655554433 333344443 2
Q ss_pred cce-----eeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE-EecCCCCCeeeeEecCCCCeEEEEECCCcE
Q 011216 391 HSV-----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 391 ~~~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i 464 (491)
... ...........+||||+.|||+|...+.+.+||+.+.+... .+.-|...|.+++|+|+..++|||+.|-.|
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 111 01111223445799999999999999999999999887632 333599999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 011216 465 VRWEFPGNGEA 475 (491)
Q Consensus 465 ~iw~~~~~~~~ 475 (491)
.||++..+...
T Consensus 555 iiysv~kP~~~ 565 (603)
T KOG0318|consen 555 IIYSVKKPAKH 565 (603)
T ss_pred EEEEccChhhh
Confidence 99999876544
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-37 Score=278.98 Aligned_cols=287 Identities=31% Similarity=0.471 Sum_probs=243.3
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..+.+|.++|++++|+|++++|++++.||.|++|++.++..... ...|...+..+.|+|++++|++++.++.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 45678999999999999999999999999999999987753332 345666788999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
+.+++...... .|...+.++.|+++++++++++.++.|.+||+.+++....+..|...+.+++|
T Consensus 80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 98764332221 24457999999999888888888999999999988888888889999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+ +++.++++++.|+.|++||++ ..+.+..+..|...+.++.|+|+++.+++++.++.|++||++..
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------- 209 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLR----TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG--------- 209 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEcc----ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------
Confidence 8 668888888889999999997 66777788888889999999999999999999999999999862
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 437 (491)
..+..+..+.. ....+.++|++.++++++.||.|++||+.+++.+..+.
T Consensus 210 -------------------------~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 210 -------------------------KCLGTLRGHEN------GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred -------------------------ceecchhhcCC------ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 33333333331 12334566788888888889999999999999999999
Q ss_pred CCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 438 ~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
.|...|.+++|+|++++|++++.||.|++|+
T Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999996
No 21
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=247.82 Aligned_cols=290 Identities=22% Similarity=0.361 Sum_probs=253.3
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC
Q 011216 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg 191 (491)
+|.+....+..|+++|.++.|+-||+|.++++.|.+|++||...+..++ ...+|...|.+++.+.|+..+++|+.|.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeeccccccccccccCCCCc
Confidence 4666677889999999999999999999999999999999999886555 4467777999999999999999999999
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC--eeeEEEeccC
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHT 269 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~ 269 (491)
.|.+||+++|+..+.+. +|...|..++|+.+...+++|+.|..+++||.++. ++++.+....
T Consensus 82 ~v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred eEEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 99999999999876654 78889999999999999999999999999999764 5677777788
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
+.|.++..+ ++.|++|+.||+++.||+| .+.......+ .+|+++.|+++++..+.++.|+++++.|-.+
T Consensus 146 D~V~Si~v~---~heIvaGS~DGtvRtydiR----~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~t-- 214 (307)
T KOG0316|consen 146 DGVSSIDVA---EHEIVAGSVDGTVRTYDIR----KGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKET-- 214 (307)
T ss_pred CceeEEEec---ccEEEeeccCCcEEEEEee----cceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccch--
Confidence 899999986 6789999999999999999 6666655544 5899999999999999999999999999888
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
++.+..+++|.....-..|.+.. ....+++|++||.|++||+..
T Consensus 215 --------------------------------GklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 215 --------------------------------GKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred --------------------------------hHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEecc
Confidence 56788889998777767776554 467899999999999999999
Q ss_pred ccEEEEecCCCCC-eeeeEecCCCCeEEEEECCCcEEEec
Q 011216 430 GEQVAALKYHTSP-VRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 430 ~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
...+..+..|... |++++++|.-..|+++.. +.+..|.
T Consensus 259 ~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 259 ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 9999999988887 899999999888887754 4466664
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2e-37 Score=248.97 Aligned_cols=290 Identities=18% Similarity=0.254 Sum_probs=237.3
Q ss_pred CCCCCCcccccccceecccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCcee
Q 011216 92 NYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT 171 (491)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 171 (491)
+++...||+.+... .....++.-.+.|+.+.+.||++.||+++.- .||+||+.++... ......+|...
T Consensus 17 ~YDhTIRfWqa~tG---------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~-Pv~t~e~h~kN 85 (311)
T KOG0315|consen 17 GYDHTIRFWQALTG---------ICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN-PVATFEGHTKN 85 (311)
T ss_pred cCcceeeeeehhcC---------eEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC-ceeEEeccCCc
Confidence 34555566655333 3344556668999999999999999999755 7999999987543 34456788889
Q ss_pred EEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeE
Q 011216 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (491)
Q Consensus 172 v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i 251 (491)
|+++.|..+|+.+++|++||+++|||+....+.+... |..+|+++..+|+...|++|..+|.|
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~i 148 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNI 148 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcE
Confidence 9999999999999999999999999999865554443 44589999999999999999999999
Q ss_pred EEEECCCCeeeEEEe-ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc--CCCcceeeeccccccEEEEEEcCCC
Q 011216 252 YVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~i~~i~~sp~~ 328 (491)
++||+....+...+. .....|.++... +++.+++.+...|.+++|++-... ....++..++.|...+..+.+|||+
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~ 227 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV 227 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC
Confidence 999999887666554 445689999997 899999999999999999986422 2345667789999999999999999
Q ss_pred CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC
Q 011216 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
++|++++.|.+++||+..++- ..-..+++|. +..|..+||.
T Consensus 228 k~lat~ssdktv~iwn~~~~~---------------------------------kle~~l~gh~------rWvWdc~FS~ 268 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFF---------------------------------KLELVLTGHQ------RWVWDCAFSA 268 (311)
T ss_pred cEEEeecCCceEEEEecCCce---------------------------------eeEEEeecCC------ceEEeeeecc
Confidence 999999999999999998741 2334455555 4456667777
Q ss_pred CCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEec
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
||.||++|+.|+.+++||+..++.+..+.+|.....+++..
T Consensus 269 dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 269 DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99999999999999999999999999999999888777753
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.3e-36 Score=311.92 Aligned_cols=295 Identities=20% Similarity=0.348 Sum_probs=234.4
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 193 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i 193 (491)
.+..|.+.|.+++|+|+|++||+|+.|+.|+||++... ...........+...|.+++|+|. +.+|++++.||+|
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 35669999999999999999999999999999997542 100000011122347899999874 7899999999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
++||+.+++..... .+|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+ ..|
T Consensus 558 ~lWd~~~~~~~~~~----------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 558 QVWDVARSQLVTEM----------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEECCCCeEEEEe----------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999887653322 14777999999997 7889999999999999999999888777644 689
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc-ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
.++.|+++++.+|++|+.||.|++||++ ... ++..+.+|...|.++.|. ++.+|++++.|+.|++||++.....
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~----~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLR----NPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECC----CCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence 9999987889999999999999999997 333 566778999999999997 6789999999999999999753210
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
. ....+..+.+|...... ..|+|++.+|++|+.|+.|++|+.....
T Consensus 696 ~----------------------------~~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 696 I----------------------------NETPLHSFMGHTNVKNF------VGLSVSDGYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred c----------------------------CCcceEEEcCCCCCeeE------EEEcCCCCEEEEEeCCCEEEEEECCCCC
Confidence 0 02456677777643222 3567789999999999999999987665
Q ss_pred EEEEe-------------cCCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 432 QVAAL-------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 432 ~~~~~-------------~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
++..+ ..|...|.+++|+|++..|++|+.||.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 44322 234567999999999999999999999999986
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7.8e-37 Score=258.66 Aligned_cols=325 Identities=18% Similarity=0.195 Sum_probs=237.0
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
.....+..|++.|++++.+|+.+++|+|+.|..-.+|++.++.. .....+|+..|+++.|+.+|.+|++|..+|.|+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~---~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF---AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc---eeEecCCCCceEEEEEccCceEEEecCCCccEE
Confidence 34567889999999999999999999999999999999999863 345578999999999999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
||+..++.....+. . .-..+.-+.|+|.+..|++|+.||.+.+|.+.+....+.+.+|+.++++
T Consensus 132 v~~~stg~~~~~~~--~--------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~ 195 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLD--Q--------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTC 195 (399)
T ss_pred EEEcccCceEEEee--c--------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccc
Confidence 99999887654432 0 1115788999999999999999999999999998888899999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc-cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCC---
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS--- 350 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~--- 350 (491)
=.|. |+|+.++++..||+|++|++. ++.++..+... ....+++.++..+..++.|..++.+++-+..+++.
T Consensus 196 G~f~-pdGKr~~tgy~dgti~~Wn~k----tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 196 GEFI-PDGKRILTGYDDGTIIVWNPK----TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccc-CCCceEEEEecCceEEEEecC----CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 9998 679999999999999999997 66666555421 12234444444444444444444444333322110
Q ss_pred ----ccccccCcccceeeceeecCCCCcccccCC-CCCeeE----------EEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 351 ----NASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVA----------TYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 351 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
..............+..+.+.......+.. -+..+. ..-.|. ..++++.|-+ ..+|++
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he--~~V~~l~w~~-----t~~l~t 343 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE--DGVTKLKWLN-----TDYLLT 343 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC--CceEEEEEcC-----cchhee
Confidence 011111111111111112221111111111 011122 222222 2244444432 578999
Q ss_pred EecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 416 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 416 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
++.+|.|+.||.++|+++..+.+|...|.+++++|+.++++|+|.|++.+|++++
T Consensus 344 ~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999875
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-36 Score=247.15 Aligned_cols=256 Identities=21% Similarity=0.284 Sum_probs=213.5
Q ss_pred EEeeccCCceeEEEeEeCCCC-ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC
Q 011216 161 KDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 161 ~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 239 (491)
......+|.+.|+.++..+.+ ..+++++.|.++.+|++.......- .......||...|..+..++||
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G-----------~~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG-----------VPVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC-----------ceeeeeeccceEecceEEccCC
Confidence 344568899999999998874 6888899999999999976532111 1111234688899999999999
Q ss_pred CEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc--cc
Q 011216 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LE 317 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~ 317 (491)
++.++++.|+.+++||+.+++..+.|.+|...|.+++|+ ++++.+++|+.|.+|++|+. .+.+...+..+ .+
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt-----~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNT-----LGVCKYTIHEDSHRE 149 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEec-CCCceeecCCCcceeeeeee-----cccEEEEEecCCCcC
Confidence 999999999999999999999999999999999999998 88899999999999999998 45555555544 68
Q ss_pred cEEEEEEcCC--CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee
Q 011216 318 GITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 ~i~~i~~sp~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
.|.++.|+|+ ..+|++++.|+++++||+++. +....+.+|....
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----------------------------------~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----------------------------------QLRTTFIGHSGYV 195 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----------------------------------chhhccccccccE
Confidence 8999999998 789999999999999999983 4445566666433
Q ss_pred eeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
+. .++||||.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+. +-.|+|||+.+....
T Consensus 196 ~t------~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 196 NT------VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV 267 (315)
T ss_pred EE------EEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence 32 3788899999999999999999999999988886 788999999999988777665 445999999887543
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.1e-36 Score=244.99 Aligned_cols=251 Identities=22% Similarity=0.331 Sum_probs=220.6
Q ss_pred eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
..+++|.+.|.++.|++|.++|++++.||.+.|||.-+......+.++. ..|..++|+|.|+++
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s----------------~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPS----------------SWVMTCAYSPSGNFV 112 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCc----------------eeEEEEEECCCCCeE
Confidence 4567899999999999999999999999999999998877655554432 279999999999999
Q ss_pred EEEecCCeEEEEECCCC------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc
Q 011216 243 VAGSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
++|+-|+...||++.+. ...+.+.+|.+.+.|+.|. + +..|++++.|.++.+||+. +++.+..+.+|.
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-d-D~~ilT~SGD~TCalWDie----~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-D-DNHILTGSGDMTCALWDIE----TGQQTQVFHGHT 186 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEc-C-CCceEecCCCceEEEEEcc----cceEEEEecCCc
Confidence 99999999999999865 3456688999999999996 4 6678899999999999998 899999999999
Q ss_pred ccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee
Q 011216 317 EGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 317 ~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
+.|.+++++| +++.+++|+-|+..++||+|. +..+++|.+|....
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~----------------------------------~~c~qtF~ghesDI 232 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS----------------------------------GQCVQTFEGHESDI 232 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccC----------------------------------cceeEeeccccccc
Confidence 9999999999 999999999999999999998 57889999998543
Q ss_pred eeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC--CCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.. +.|.|+|.-+++|+.|++.++||++....+..+... ..+|++++||..|++|.+|..|.++.+||.-.++
T Consensus 233 Ns------v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 233 NS------VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ce------EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 33 256679999999999999999999999998888632 3579999999999999999999999999987665
Q ss_pred CC
Q 011216 474 EA 475 (491)
Q Consensus 474 ~~ 475 (491)
..
T Consensus 307 ~v 308 (343)
T KOG0286|consen 307 RV 308 (343)
T ss_pred eE
Confidence 44
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-37 Score=262.07 Aligned_cols=275 Identities=26% Similarity=0.386 Sum_probs=234.5
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
....|+|+++. ...+++|..|++|+|||..+...+. ...+|.+.|.|+.| +.+.|++|+.|.+|+|||+++++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc
Confidence 46789999995 4569999999999999998764443 45789999999998 56799999999999999999998
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee---eEEEeccCCCeEEEEEec
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~i~~~~ 279 (491)
.+...- +|...|..+.|+ ..++++++.|.++.+||+..... .+.+.+|...|+.+.|.
T Consensus 269 ~l~tli----------------hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 269 PLNTLI----------------HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred hhhHHh----------------hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence 865543 577799999998 44899999999999999987652 34567999999999995
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcc
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
.+++++++.|.+|++|++. +...+..+.+|..+|.|+.+ .++++++|+.|.+|++||+..
T Consensus 330 --~kyIVsASgDRTikvW~~s----t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~------------ 389 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC------------ 389 (499)
T ss_pred --cceEEEecCCceEEEEecc----ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc------------
Confidence 4599999999999999998 88999999999999999988 588999999999999999987
Q ss_pred cceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc--------
Q 011216 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-------- 431 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-------- 431 (491)
+..++.++||......+++ |.+.+++|..||+|++||+..+.
T Consensus 390 ----------------------G~cLRvLeGHEeLvRciRF--------d~krIVSGaYDGkikvWdl~aaldpra~~~~ 439 (499)
T KOG0281|consen 390 ----------------------GACLRVLEGHEELVRCIRF--------DNKRIVSGAYDGKIKVWDLQAALDPRAPAST 439 (499)
T ss_pred ----------------------cHHHHHHhchHHhhhheee--------cCceeeeccccceEEEEecccccCCcccccc
Confidence 5778888999866555432 67899999999999999998764
Q ss_pred -EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 432 -QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 432 -~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
++..+..|++.|..+.| |...+++++.|.+|.|||+..+...
T Consensus 440 ~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 440 LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 23445579999999999 7778999999999999999887544
No 28
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=279.68 Aligned_cols=304 Identities=21% Similarity=0.311 Sum_probs=255.4
Q ss_pred CCCCCccccCCCCceEEEEE-cCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC
Q 011216 113 PVNGPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~-s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg 191 (491)
.......+-+..+.|..|+| -|+.++||.++..+.+++|++.+.... ...+|...|.++....+|.+|++|+.|.
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~sKD~ 387 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATGSKDK 387 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----EEeCchhheeeeeecccCcEEEEecCCc
Confidence 33344566788999999987 667799999999999999998876333 4578999999999667789999999999
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCee-----eE--
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-----SL-- 263 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-----~~-- 263 (491)
++++|.++.+...... .....+|.+.|.+++++..+ ..|++++.|.++++|++...+. ..
T Consensus 388 svilWr~~~~~~~~~~------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLC------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred eEEEEEecCCcchhhh------------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 9999998544332211 11234799999999998754 5899999999999999976221 11
Q ss_pred --EEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEE
Q 011216 264 --RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 264 --~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~ 341 (491)
....|...|+|++++ |+..+++|||.|.+.+||++. ......++.+|..+|.++.|+|..+.++++|.|++|+
T Consensus 456 ~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred hHHHHhhcccccceEec-CCCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 223799999999998 788999999999999999998 8888999999999999999999999999999999999
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCe
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 421 (491)
||.+.+ ..++.++.||. ..+.++ .|-.+|+.|++++.||-
T Consensus 531 IW~is~----------------------------------fSClkT~eGH~--~aVlra----~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 531 IWSIST----------------------------------FSCLKTFEGHT--SAVLRA----SFIRNGKQLISAGADGL 570 (775)
T ss_pred EEEecc----------------------------------ceeeeeecCcc--ceeEee----eeeeCCcEEEeccCCCc
Confidence 999998 36788999998 334444 34448999999999999
Q ss_pred EEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCC
Q 011216 422 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 477 (491)
|++|++++++++.++..|...|++++-+|...+++||+.||.|.+|.=.+..+...
T Consensus 571 iKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~e 626 (775)
T KOG0319|consen 571 IKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNE 626 (775)
T ss_pred EEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHH
Confidence 99999999999999999999999999999999999999999999998666554443
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-36 Score=277.67 Aligned_cols=389 Identities=18% Similarity=0.198 Sum_probs=286.5
Q ss_pred CCcchhHHHHHHhhcccCCccccccccCCCCcccc------chhhhhhc-cccCC-----CCCCcccc---cccceeccc
Q 011216 46 PLSALDHEIAQLTKLKSEPKEHFSKEVPGKRHLPV------STVKMLAG-REGNY-----SGRGRFSA---ADCCHMLSR 110 (491)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~-----~~~~~~~~---~~~~~~~~~ 110 (491)
....-.++-..++++...|++...-..-..+...+ ..++.... ++..+ ++.+..-+ ++....+++
T Consensus 54 l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWd 133 (775)
T KOG0319|consen 54 LPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWD 133 (775)
T ss_pred cccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEE
Confidence 33445566778888888888765443322221111 11222222 22211 11112212 223333444
Q ss_pred ccCCCCCccccCCCCceEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe
Q 011216 111 YLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 188 (491)
+--......+.+|.+.|.++.|+|+-+ +|++|..|+++++||+.+... .......|...|++++|++|+..+++++
T Consensus 134 i~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~ 211 (775)
T KOG0319|consen 134 IKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVG 211 (775)
T ss_pred eeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEec
Confidence 444455578899999999999999875 488999999999999986533 2345567888999999999999999999
Q ss_pred cCCeEEEEECCCCccccccceecccccccc-------------------------------------ccC----------
Q 011216 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDF-------------------------------------SAA---------- 221 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~---------- 221 (491)
.|..+.|||+.+-+........+..++..+ +..
T Consensus 212 RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~ 291 (775)
T KOG0319|consen 212 RDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIE 291 (775)
T ss_pred cCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceecc
Confidence 999999999865443222211110000000 000
Q ss_pred --------------------------------------------------------------------CCCCceecEEEE
Q 011216 222 --------------------------------------------------------------------DDGGYSFGIFSL 233 (491)
Q Consensus 222 --------------------------------------------------------------------~~~~h~~~v~~i 233 (491)
...||+..|.++
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL 371 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSL 371 (775)
T ss_pred ccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeee
Confidence 001788888888
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCe----eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcce
Q 011216 234 KFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 309 (491)
Q Consensus 234 ~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 309 (491)
....+|.+|++|+.|.++++|.++.+. ++....+|...|.+++++.....+|+++|.|+++++|++........++
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~ 451 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI 451 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence 866678899999999999999885443 3445568999999999986677899999999999999997422111111
Q ss_pred -e----eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCe
Q 011216 310 -G----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 384 (491)
Q Consensus 310 -~----~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
. ....|...|++++++|+.+++++|+.|++.+||++.. ...
T Consensus 452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~----------------------------------~~l 497 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ----------------------------------LRL 497 (775)
T ss_pred eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC----------------------------------ceE
Confidence 1 3356999999999999999999999999999999985 367
Q ss_pred eEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcE
Q 011216 385 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i 464 (491)
..++.||. +..|+..|+|..+.+|+++.|++|+||.+.+..+++++.+|...|..+.|-.+++.|+|++.||.|
T Consensus 498 ~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGli 571 (775)
T KOG0319|consen 498 LGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLI 571 (775)
T ss_pred EEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcE
Confidence 88889998 556777888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCC
Q 011216 465 VRWEFPGNGEAA 476 (491)
Q Consensus 465 ~iw~~~~~~~~~ 476 (491)
++|++.+++...
T Consensus 572 KlWnikt~eC~~ 583 (775)
T KOG0319|consen 572 KLWNIKTNECEM 583 (775)
T ss_pred EEEeccchhhhh
Confidence 999999886543
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-34 Score=253.86 Aligned_cols=312 Identities=18% Similarity=0.262 Sum_probs=253.9
Q ss_pred cccccceecccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC
Q 011216 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (491)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp 179 (491)
...+++.++..+-.........+|..+++...|||.|.|+|+|...|.|||||......+.+. ......++|.+|+|++
T Consensus 35 Y~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKn-ef~v~aG~I~Di~Wd~ 113 (603)
T KOG0318|consen 35 YTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKN-EFQVLAGPIKDISWDF 113 (603)
T ss_pred EeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeee-eeeecccccccceeCC
Confidence 334455555444444556778899999999999999999999999999999998764343332 2344566999999999
Q ss_pred CCceEEEEecC----CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEE
Q 011216 180 DQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVY 254 (491)
Q Consensus 180 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vw 254 (491)
|+++|++.++. |.+.+||.. .... ...||+..|.++.|-|.-. ++++|+.|++|.+|
T Consensus 114 ds~RI~avGEGrerfg~~F~~DSG--~SvG----------------ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff 175 (603)
T KOG0318|consen 114 DSKRIAAVGEGRERFGHVFLWDSG--NSVG----------------EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF 175 (603)
T ss_pred CCcEEEEEecCccceeEEEEecCC--Cccc----------------eeeccceeEeeeeccCCCceEEEeccCCCeEEEe
Confidence 99999887753 356666643 3221 1237888999999998654 79999999999999
Q ss_pred ECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec---cccccEEEEEEcCCCCEE
Q 011216 255 DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 255 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~i~~sp~~~~l 331 (491)
+-.--+....+..|...|+|+.|+ |++.+|++++.||+|.+||-. .++.+..+. +|.+.|.+++|+||++.+
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCCCceE
Confidence 987777777888999999999998 789999999999999999987 778888777 899999999999999999
Q ss_pred EEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccc-eeeeeEEEEecCcccCCC
Q 011216 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~ 410 (491)
++++.|.+++|||+.+. ..++++.-.. .....+.|.|. .
T Consensus 251 ~T~SaDkt~KIWdVs~~----------------------------------slv~t~~~~~~v~dqqvG~lWq------k 290 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTN----------------------------------SLVSTWPMGSTVEDQQVGCLWQ------K 290 (603)
T ss_pred EEecCCceEEEEEeecc----------------------------------ceEEEeecCCchhceEEEEEEe------C
Confidence 99999999999999984 3344443222 12233445443 4
Q ss_pred cEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
..|++.+.+|.|.+++.....++..+.+|...|++++.+||+++|++|+.||.|.-|+...+...
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 67999999999999999999999999999999999999999999999999999999999887654
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=266.49 Aligned_cols=301 Identities=18% Similarity=0.338 Sum_probs=255.8
Q ss_pred CCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC------------------------CeE-------EEE
Q 011216 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------------------GWK-------IQK 161 (491)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~------------------------~~~-------~~~ 161 (491)
....+..+.+|.+.|-++-|..|..-+.+.+.||.+.+|.... .++ ..+
T Consensus 178 k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~ 257 (893)
T KOG0291|consen 178 KNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK 257 (893)
T ss_pred cccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence 3344678899999999999999999999999999999998871 110 010
Q ss_pred EeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCE
Q 011216 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 162 ~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 241 (491)
..........|++.+|++..+.|+++-..|...++.+..-.++....+.. .+|..++|+..|..
T Consensus 258 k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~----------------~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 258 KHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD----------------QKILTVSFNSTGDW 321 (893)
T ss_pred eeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc----------------ceeeEEEecccCCE
Confidence 11112222579999999999999999999999999998887766655432 17999999999999
Q ss_pred EEEEecC-CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEE
Q 011216 242 LVAGSSD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 242 l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
|+.|+.. |++.||+..+..-+....+|...+++++++ ||++++++|+.||.|+|||.. .+-+..++..|+..|+
T Consensus 322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~----SgfC~vTFteHts~Vt 396 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQ----SGFCFVTFTEHTSGVT 396 (893)
T ss_pred EEEcCCccceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEecc----CceEEEEeccCCCceE
Confidence 9998765 899999999999988899999999999998 899999999999999999998 8889999999999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEE
Q 011216 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
.+.|+..|+.+++.+-||+|+.||+... ...+++.......
T Consensus 397 ~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------------------rNfRTft~P~p~Q----- 437 (893)
T KOG0291|consen 397 AVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------------------RNFRTFTSPEPIQ----- 437 (893)
T ss_pred EEEEEecCCEEEEeecCCeEEeeeeccc----------------------------------ceeeeecCCCcee-----
Confidence 9999999999999999999999999862 4455555444211
Q ss_pred EecCcccCCCcEEEEEecCC-eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 401 HFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
..+.+..|.|.++.+|+.|. .|++|++++|+.+..+.+|.+||.+++|+|++..|+++++|.+|++|++-...
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence 12235667799999999986 69999999999999999999999999999999999999999999999997763
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.5e-35 Score=275.15 Aligned_cols=206 Identities=22% Similarity=0.350 Sum_probs=191.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..+.+|.++|+.+.|+|+.++|++++.|+++|+|.+.+.. ......+|..+|.++.|+|-|-|+|+++.|++-++|.
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s---~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS---CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccce---eEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 3477999999999999999999999999999999999863 3445579999999999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
.......+++. ||-+.|.|+.|+|+..++++|+.|.+|++||+.+|..++.+.+|.++|.+++|
T Consensus 522 ~d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 522 TDHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred cccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 98866655543 67789999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+ |+|++|++|+.||.|.+||+. .+..+..+.+|.+.|.++.|+.+|..||+|+.|.+|++||+..
T Consensus 586 S-p~Gr~LaSg~ed~~I~iWDl~----~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 586 S-PCGRYLASGDEDGLIKIWDLA----NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred c-CCCceEeecccCCcEEEEEcC----CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9 799999999999999999998 8899999999999999999999999999999999999999986
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-34 Score=263.68 Aligned_cols=289 Identities=20% Similarity=0.317 Sum_probs=246.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-CeEEEEECCC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVGS 200 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g~i~iwd~~~ 200 (491)
.....|+|.+|++..+.||+|...|...+|.+..-..++....... .|..++|+..|..|+.|+.. |.+-||+..+
T Consensus 263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~---~I~t~~~N~tGDWiA~g~~klgQLlVweWqs 339 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ---KILTVSFNSTGDWIAFGCSKLGQLLVWEWQS 339 (893)
T ss_pred ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc---eeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence 3348899999999999999999999999999998766665543322 79999999999999998755 8999999987
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
...+... .+|...+.+++++|||+++++|+.||.|+|||..++-+..++..|++.|+.+.|+ .
T Consensus 340 EsYVlKQ----------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~ 402 (893)
T KOG0291|consen 340 ESYVLKQ----------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-A 402 (893)
T ss_pred cceeeec----------------cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-e
Confidence 6653322 2688899999999999999999999999999999999999999999999999998 8
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc-ccEEEEEEcCCCCEEEEeeCCC-cEEEeeCCCCCCccccccCc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~i~~sp~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 358 (491)
.++.+++.+.||+|+.||+. .....+++.... ....+++..|.|..+++|+.|. .|.+|++.+
T Consensus 403 ~g~~llssSLDGtVRAwDlk----RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT----------- 467 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLK----RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT----------- 467 (893)
T ss_pred cCCEEEEeecCCeEEeeeec----ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec-----------
Confidence 99999999999999999997 677777776543 3467888999999999998886 499999998
Q ss_pred ccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-cEEEEec
Q 011216 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALK 437 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~ 437 (491)
++.+..+.||.... .+..|+|++..|++|+.|.+|++||+-.. ..+.+++
T Consensus 468 -----------------------GqllDiLsGHEgPV------s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 468 -----------------------GQLLDILSGHEGPV------SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred -----------------------CeeeehhcCCCCcc------eeeEEccccCeEEeccccceEEEEEeeccCceeeeEe
Confidence 57788889998432 34467789999999999999999998654 3445554
Q ss_pred CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 438 ~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
+...+.+++|+|||+.|+++..||.|.+||...+.+.
T Consensus 519 -i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 519 -IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred -eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 6678999999999999999999999999999877655
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.4e-36 Score=249.36 Aligned_cols=287 Identities=22% Similarity=0.312 Sum_probs=244.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee------ccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~------~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
+..+.+-|..|||||+||++|+.||.|.|||..+|+.. +.+. .--+..+|.|+.|+.|...|++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr-KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhh-hhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 45677889999999999999999999999999888322 2111 1224558999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
|.+.+|.++..+. ..|+..|+|+.|+.|+..+++++.|.++++.-+.+|+++..+++|.+.|+..
T Consensus 290 Wri~tG~ClRrFd---------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 290 WRIETGQCLRRFD---------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred EEEecchHHHHhh---------------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999876553 2477799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc--ccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
.|. ++|+.+++++.||+|++|+.. ...++..+.. ..-+|.++-.-| +...++++...+++.|.++..
T Consensus 355 ~ft-~dG~~iisaSsDgtvkvW~~K----tteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----- 424 (508)
T KOG0275|consen 355 TFT-DDGHHIISASSDGTVKVWHGK----TTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----- 424 (508)
T ss_pred EEc-CCCCeEEEecCCccEEEecCc----chhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-----
Confidence 998 899999999999999999987 6666666653 344677777666 457888999999999999875
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc-ceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
+.++.+... ......+.+ ..||.|.++++.+.|+.++.+.+.+|+
T Consensus 425 ------------------------------QvVrsfsSGkREgGdFi~~----~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 425 ------------------------------QVVRSFSSGKREGGDFINA----ILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred ------------------------------eEEeeeccCCccCCceEEE----EecCCCcEEEEEccCcEEEEEEeecCc
Confidence 667776533 222333433 456689999999999999999999999
Q ss_pred EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 432 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 432 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
....+..|...|..++-+|..+.||+-+.||.+++|.
T Consensus 471 LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 471 LERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999996
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.6e-35 Score=262.12 Aligned_cols=293 Identities=20% Similarity=0.253 Sum_probs=251.7
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+..++.+|.++.|+|...+++++-.+|.|.|||.++...+...... .-+|.+..|-+..+.+++|+.|..|+||
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~---~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS---EVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec---ccchhhheeeeccceEEEecCCceEEEE
Confidence 3456668999999999999999999999999999999987555544333 3389999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEeccCCCeEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~i 275 (491)
+..+++....+. .|++-|.+++.+|...++++++.|-.|++||.+.+ .+.+++.+|...|.++
T Consensus 83 nynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 83 NYNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred ecccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 999988655443 58889999999999999999999999999999765 5677899999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC--CCEEEEeeCCCcEEEeeCCCCCCccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~--~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (491)
+|+|.+.+.+++++-|++|++|.+. ...+..++.+|..+|+++.+-+- ..+|++|+.|.+|+|||..+
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------ 216 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------ 216 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch------
Confidence 9999999999999999999999997 77888999999999999999774 46999999999999999988
Q ss_pred cccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE
Q 011216 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 433 (491)
..++++++||... +....|.| .-.++++|+.||+|+||+..+-++.
T Consensus 217 ----------------------------k~CV~TLeGHt~N--vs~v~fhp----~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 217 ----------------------------KSCVQTLEGHTNN--VSFVFFHP----ELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ----------------------------HHHHHHhhccccc--ceEEEecC----CCcEEEEecCCccEEEecCcceehh
Confidence 4678889999843 33344444 5679999999999999999998888
Q ss_pred EEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 434 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
..+.-.-+.|++++-.+.+..++.|.+.|.|. .++..+.
T Consensus 263 ~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgree 301 (794)
T KOG0276|consen 263 KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREE 301 (794)
T ss_pred hhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCC
Confidence 88887788999999999888888888777664 3444433
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-35 Score=238.20 Aligned_cols=291 Identities=22% Similarity=0.330 Sum_probs=247.6
Q ss_pred CCccccCCCCceEEEEEcC---CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 116 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~---dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
.|...++|+.+|-.++||| +|-+|++++.||.-.+-+-++|.-+. ...+|.+.|...++..+...-++++.|-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhhhhhhhcccch
Confidence 3567799999999999986 88899999999999888888885554 44688899999999998888899999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEEEeccCCC
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSD 271 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~ 271 (491)
-++||.-+|..+..+. |..-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.
T Consensus 83 akvw~a~tgdelhsf~-----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhhh-----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 9999999988766554 45579999999999999999999999999998765 55678899999
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
|..+.|. ...+.|++.+.|++||+||.+ ++..+..+. ...+|+++.++++|++|.++ ..+.|.+||..+..
T Consensus 146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~r----Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~-- 216 (334)
T KOG0278|consen 146 IRTVLWC-HEDKCILSSADDKTVRLWDHR----TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG-- 216 (334)
T ss_pred ceeEEEe-ccCceEEeeccCCceEEEEec----cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc--
Confidence 9999998 777888888999999999999 888888776 45789999999999877665 45679999998743
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
.++.++-... +.+...+|+...+++|+.|..++.||..+|+
T Consensus 217 --------------------------------~lKs~k~P~n-------V~SASL~P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 217 --------------------------------LLKSYKMPCN-------VESASLHPKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred --------------------------------ceeeccCccc-------cccccccCCCceEEecCcceEEEEEeccCCc
Confidence 3333332221 2334577788999999999999999999999
Q ss_pred EEEEe-cCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 432 QVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 432 ~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+..+ ++|.++|.++.|+|||..-++|+.||+|++|.+..++.
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99886 89999999999999999999999999999999887653
No 37
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-34 Score=235.43 Aligned_cols=290 Identities=20% Similarity=0.297 Sum_probs=238.6
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
|..+++|+.+++.+.++.+|.+|.+++.|.+..||-..+|+.+- ...+|.+.|.++..+.+.++|++|+.|.++++|
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 46789999999999999999999999999999999988886555 558999999999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-----CCeEEEEECC-------CCeeeEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLE-------ANKLSLR 264 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-----dg~i~vwd~~-------~~~~~~~ 264 (491)
|+++|+.+....... +|..+.|+++|++++.... .+.|.++|++ ..++...
T Consensus 80 Dv~tGk~la~~k~~~-----------------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 80 DVETGKQLATWKTNS-----------------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred EcCCCcEEEEeecCC-----------------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 999999887776543 7999999999998777654 4679999997 4556788
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC-cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iw 343 (491)
+..+.+.++.+-|. +-+..|++|..||.|..||++ ++ ..+.....|...|+.+.++||..++++++.|.+-++|
T Consensus 143 I~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWG-PLGETIIAGHEDGSISIYDAR----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLV 217 (327)
T ss_pred ecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcc----cCceeeechhhhccccccccccCCcceEEecccCccceee
Confidence 88889999999998 788999999999999999998 54 4555667899999999999999999999999999999
Q ss_pred eCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC--e
Q 011216 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--C 421 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~ 421 (491)
|+++.. .++++..... + .+.+++|-...++.|+... .
T Consensus 218 D~~tl~----------------------------------v~Kty~te~P---v----N~aaisP~~d~VilgGGqeA~d 256 (327)
T KOG0643|consen 218 DVRTLE----------------------------------VLKTYTTERP---V----NTAAISPLLDHVILGGGQEAMD 256 (327)
T ss_pred ecccee----------------------------------eEEEeeeccc---c----cceecccccceEEecCCceeee
Confidence 999843 3444443322 1 2235566566666554321 1
Q ss_pred ------------EEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 422 ------------VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 422 ------------i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
-++|++-..+.+..+++|-++|++++|+|+|+..++|+.||.|++.-+...
T Consensus 257 VTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 257 VTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 233333334567788899999999999999999999999999999877653
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.6e-36 Score=258.11 Aligned_cols=243 Identities=24% Similarity=0.406 Sum_probs=208.8
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.|..+.|.|+|+.|++|+..|.+.+|+..+-..+.+. ..|..+|.++.|++++.++++|+.+|.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil----------------QaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL----------------QAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh----------------hhhcccceeEEEccCCCEEEEcCCCce
Confidence 7999999999999999999999999997443322221 247889999999999999999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
|++|+............|...|++++|+ +++..|++++.||+|+|||.. ..+....+.+|.-.|.+++|+|....
T Consensus 162 iKyWqpnmnnVk~~~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~----~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 162 IKYWQPNMNNVKIIQAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFR----MPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred EEecccchhhhHHhhHhhhhhhheeccC-CCCceeEEecCCCeEEEEecc----CCchhheeccCCCCcceeccCCccce
Confidence 9999987665543333555999999999 577889999999999999998 77777888999999999999999999
Q ss_pred EEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC
Q 011216 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
|++++.|..|++||.++ +.++.++.+|. .++... .|++++
T Consensus 237 iasgskDnlVKlWDprS----------------------------------g~cl~tlh~HK--ntVl~~----~f~~n~ 276 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRS----------------------------------GSCLATLHGHK--NTVLAV----KFNPNG 276 (464)
T ss_pred eEEccCCceeEeecCCC----------------------------------cchhhhhhhcc--ceEEEE----EEcCCC
Confidence 99999999999999998 46677777777 333333 566689
Q ss_pred cEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCCCC
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
++|++++.|..++++|+++-+.+..+++|...|+++.|+|-.. +|.+|+.||.|..|.+...++
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc
Confidence 9999999999999999999999999999999999999999655 888999999999999984443
No 39
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.8e-34 Score=230.71 Aligned_cols=288 Identities=18% Similarity=0.333 Sum_probs=239.5
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iw 196 (491)
..+++|...|.+++|+.+|..|++|+.|+++.||+++.. .........+|.+.|-.++|+|. ...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567889999999999999999999999999999999877 34444566788889999999985 4789999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
|+..+++........ .=.-+.|+|+|.++++++.|..|.+.|.++.+..... .....++.++
T Consensus 93 d~r~~k~~~~i~~~~-----------------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~ 154 (313)
T KOG1407|consen 93 DIRSGKCTARIETKG-----------------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS 154 (313)
T ss_pred EeccCcEEEEeeccC-----------------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence 999988765544322 3345799999999999999999999999988776554 4456788899
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
|+ .++++++.....|+|.|.... .-+++..++.|.....||.|+|+|++||+|+.|..+.+||+..+-+
T Consensus 155 w~-~~nd~Fflt~GlG~v~ILsyp----sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC------ 223 (313)
T KOG1407|consen 155 WN-NSNDLFFLTNGLGCVEILSYP----SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC------ 223 (313)
T ss_pred ec-CCCCEEEEecCCceEEEEecc----ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh------
Confidence 98 778888888888999999987 7889999999999999999999999999999999999999987432
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
++.+..+.-. +..+.||.||++||+|++|..|-|-++.+|..+..+
T Consensus 224 ----------------------------~R~isRldwp------VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 224 ----------------------------ERCISRLDWP------VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred ----------------------------heeeccccCc------eEEEEeccCcceeeccCccceEEeEecccCCeEEEe
Confidence 2333322211 122367779999999999999999999999999999
Q ss_pred cCCCCCeeeeEecCCCCeEEEEECC---------CcEEEecCC
Q 011216 437 KYHTSPVRDCSWHPSQPMLVSSSWD---------GDVVRWEFP 470 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~~~l~s~~~D---------g~i~iw~~~ 470 (491)
+ +.++-..++|+|...+||-++.| |.|+++-++
T Consensus 270 ~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 270 P-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred e-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 7 78899999999999999988765 456665443
No 40
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=255.24 Aligned_cols=302 Identities=22% Similarity=0.311 Sum_probs=250.8
Q ss_pred ceecccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceE
Q 011216 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 184 (491)
..++...+|......++.|.+.+..+.|-++...|++|+.|..|++|++..++ ........+..+.|+.+.|.++++++
T Consensus 156 d~~v~~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 156 DHFVEDTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhcccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceE
Confidence 67788889999999999999999999999999999999999999999998663 22333445666689999999999999
Q ss_pred EEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 011216 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
++++.|+.+++|++...+....+. ||+..|+++.|......+++|+.|.+|++||+....+..+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLs----------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLS----------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhc----------------ccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 999999999999999887755543 6899999999998777799999999999999999888766
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd 344 (491)
+. ....+..|+.+ ...+++|..|++|++||.+ ...+......+ +.|+++..++++..|.+++.|.++.+.|
T Consensus 299 ~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~R----s~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIR----SADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVID 369 (459)
T ss_pred cc-ccccccceEec---ceeeeecccccceEEEecc----CCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeee
Confidence 63 34556677764 5678999999999999998 77777777665 4999999999999999999999999999
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 424 (491)
+++.. ....+...... .... .....|||++.|+++|+.||.|+|
T Consensus 370 lRt~e----------------------------------I~~~~sA~g~k-~asD-wtrvvfSpd~~YvaAGS~dgsv~i 413 (459)
T KOG0288|consen 370 LRTKE----------------------------------IRQTFSAEGFK-CASD-WTRVVFSPDGSYVAAGSADGSVYI 413 (459)
T ss_pred ccccc----------------------------------EEEEeeccccc-cccc-cceeEECCCCceeeeccCCCcEEE
Confidence 99843 23333322110 0000 122357889999999999999999
Q ss_pred EECCCccEEEEecCCCC--CeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 425 YDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 425 wd~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
|++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 414 W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 414 WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999988875444 599999999999999999999999994
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=245.13 Aligned_cols=258 Identities=23% Similarity=0.360 Sum_probs=220.6
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~ 244 (491)
..+|+.+|+.+-|+|+-..+++++.|++|++||..+++.....+ ||...+.+++|+..|++|++
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr----------------GHt~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR----------------GHTDSVFDISFDASGKYLAT 167 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh----------------ccccceeEEEEecCccEEEe
Confidence 35688899999999999999999999999999999998855443 78889999999999999999
Q ss_pred EecCCeEEEEECCC-CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 245 GSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 245 ~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
++.|-.+.+||..+ -++++.+.+|.-.|.+++|- |.+.++++++.|.+|+.|++. .+.++..+.+|.+.|..++
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecc----cceeEEeccCchHhEEEEE
Confidence 99999999999987 55667778999999999998 668999999999999999998 8999999999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe-
Q 011216 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF- 402 (491)
Q Consensus 324 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 402 (491)
.+.||.++++++.|.+|++|-+.+.+.. ..++.|.....++....
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~~~k----------------------------------~~lR~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATKQCK----------------------------------AELREHEHPVECIAWAPE 288 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccchhh----------------------------------hhhhccccceEEEEeccc
Confidence 9999999999999999999999885332 22333332222222110
Q ss_pred --cCcc------cCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 403 --SPVY------STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 403 --~~~~------s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+.. ...+.++.+++.|++|++||+.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||+.+...
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee
Confidence 0110 01357999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC
Q 011216 475 AAP 477 (491)
Q Consensus 475 ~~~ 477 (491)
...
T Consensus 369 mk~ 371 (406)
T KOG0295|consen 369 MKT 371 (406)
T ss_pred eec
Confidence 543
No 42
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=254.22 Aligned_cols=317 Identities=20% Similarity=0.326 Sum_probs=246.4
Q ss_pred ccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEeeccCCceeEEEeEeCCCCceE
Q 011216 109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (491)
Q Consensus 109 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~~l 184 (491)
...+|......+.+|+..|.++++.|.|-+|++|+-|..|++||+..- .....+.....| .|+++.|++.|..|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h--~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETH--QINSLQYSVTGDQI 229 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCccccc--ccceeeecCCCCeE
Confidence 456787778889999999999999999999999999999999998753 112222333344 79999999999999
Q ss_pred EEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeE
Q 011216 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSL 263 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 263 (491)
++.+.....+|+|-+........+-.. .........||...++|.+|+|+. ..+++++.||++++||+...+...
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQ----YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQ----YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccch----hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 999989999999987665544333221 112233456899999999999965 579999999999999997755332
Q ss_pred E-Ee-----ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc--cEEEEEEcCCCCEEEEee
Q 011216 264 R-IL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNG 335 (491)
Q Consensus 264 ~-~~-----~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~i~~sp~~~~l~~~~ 335 (491)
. +. +..-+++.++|+ +++.+||+|..||.|.+|+.+... .......-.+|.. .|++|.||+||++|++-+
T Consensus 306 qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred eEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 2 22 234478999998 889999999999999999986332 2223334456777 899999999999999999
Q ss_pred CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.|+++++||++..+ +++..+.+-........| +|||+.++|++
T Consensus 384 ~D~tLKvWDLrq~k---------------------------------kpL~~~tgL~t~~~~tdc----~FSPd~kli~T 426 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFK---------------------------------KPLNVRTGLPTPFPGTDC----CFSPDDKLILT 426 (641)
T ss_pred CCCceeeeeccccc---------------------------------cchhhhcCCCccCCCCcc----ccCCCceEEEe
Confidence 99999999999865 333333333222222233 57779999999
Q ss_pred Eec------CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 416 GSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 416 g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
|+. .|.+++||..+...+..+......|..+.|+|.-+.|..++.||.++||==+
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECc
Confidence 865 5789999999999999998788899999999999999999999999987433
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-35 Score=250.13 Aligned_cols=238 Identities=23% Similarity=0.379 Sum_probs=206.3
Q ss_pred ceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC
Q 011216 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 169 ~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d 248 (491)
...|.|+.+ |...+++|..|++|+|||..+-.+..... ||++.|.|+.|. .+.+++|+.|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~----------------GHtGSVLCLqyd--~rviisGSSD 256 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILT----------------GHTGSVLCLQYD--ERVIVSGSSD 256 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhh----------------cCCCcEEeeecc--ceEEEecCCC
Confidence 347999988 56678999999999999998876655443 799999999996 5699999999
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC
Q 011216 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~ 328 (491)
.+|++||.++++++.++.+|...|..+.|+ +.++++++.|.++.+||+.... .-.....+.+|...|+.+.|+ .
T Consensus 257 sTvrvWDv~tge~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~ 330 (499)
T KOG0281|consen 257 STVRVWDVNTGEPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--D 330 (499)
T ss_pred ceEEEEeccCCchhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--c
Confidence 999999999999999999999999999997 5699999999999999997443 334456788999999999995 5
Q ss_pred CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC
Q 011216 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
+++++++.|.+|++|++.+ ...++++.+|.....+. .|
T Consensus 331 kyIVsASgDRTikvW~~st----------------------------------~efvRtl~gHkRGIACl------QY-- 368 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTST----------------------------------CEFVRTLNGHKRGIACL------QY-- 368 (499)
T ss_pred ceEEEecCCceEEEEeccc----------------------------------eeeehhhhcccccceeh------hc--
Confidence 6999999999999999988 46788888887332221 23
Q ss_pred CCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
.++++++|+.|.+|++||+..|.++..+++|..-|.++.| |.+.+++|+.||+|++||+..+.++.
T Consensus 369 r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 369 RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCc
Confidence 6899999999999999999999999999999999999999 77899999999999999999887663
No 44
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-34 Score=237.86 Aligned_cols=302 Identities=22% Similarity=0.333 Sum_probs=241.3
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC------------Ce---EEEEEeeccCCceeEEEeEeCC
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------GW---KIQKDILAKSLRWTVTDTSLSP 179 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~------------~~---~~~~~~~~~~~~~~v~~l~~sp 179 (491)
-....+..|++++.+.+|||||.++|+|+.|..|+|.|++. +. .-..+.....|...|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 33456789999999999999999999999999999999871 10 0011233456778999999999
Q ss_pred CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
....|++++.|++|+++|......++-.+.... ..+|.++.|+|.|.+|++|.....+++||+++-
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--------------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--------------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhc--------------cceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 999999999999999999987655444433221 128999999999999999999999999999998
Q ss_pred eeeEEEe---ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-ccc-ccEEEEEEcCCCCEEEEe
Q 011216 260 KLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHL-EGITFIDSRGDGRYLISN 334 (491)
Q Consensus 260 ~~~~~~~---~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~i~~i~~sp~~~~l~~~ 334 (491)
++...-. +|.+.|+++.++ +.+++.++|+.||.|++||-- ..+++..+. .|. ..|.+..|..+|+++++.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGV----S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGV----SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred eEeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccc----cHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence 8765433 689999999998 889999999999999999975 667777664 344 368899999999999999
Q ss_pred eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEE
Q 011216 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+.|..+++|.+.+ ++.+..+.|....... .......|.....|++
T Consensus 324 G~DS~vkLWEi~t----------------------------------~R~l~~YtGAg~tgrq-~~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 324 GKDSTVKLWEIST----------------------------------GRMLKEYTGAGTTGRQ-KHRTQAVFNHTEDYVL 368 (430)
T ss_pred CCcceeeeeeecC----------------------------------CceEEEEecCCcccch-hhhhhhhhcCccceEE
Confidence 9999999999998 4566666654321111 1112234555667777
Q ss_pred EEec-CCeEEEEECCCccEEEEec-CCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 415 TGSH-DSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 415 ~g~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.-.+ .+.+.-||.+++..+..+. +|.+.++.+.-||.++.+++|+.|-.+++|--.
T Consensus 369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 6654 5689999999988776654 899999999999999999999999999999643
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=244.97 Aligned_cols=248 Identities=20% Similarity=0.312 Sum_probs=220.9
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
...+|.+.|.++++.|.+.++++|+.|++++|||+.++++..... ||...|..+++|+-..|++
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt----------------Ghi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT----------------GHIETVRGVAVSKRHPYLF 209 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------------chhheeeeeeecccCceEE
Confidence 346888999999999999999999999999999999998765443 6777999999999999999
Q ss_pred EEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
+++.|+.|+.||++.++.++.+.+|-..|.|++.+ |.-..|++|+.|.++++||+| ....+..+.+|..+|..+.
T Consensus 210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVM 284 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEE
Confidence 99999999999999999999999999999999998 677899999999999999999 8889999999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEec
Q 011216 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
+.|-...+++|+.|++|++||++. ++...++..|... ..+
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~a----------------------------------gkt~~tlt~hkks------vra 324 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRA----------------------------------GKTMITLTHHKKS------VRA 324 (460)
T ss_pred eecCCCceEEecCCceEEEeeecc----------------------------------CceeEeeecccce------eeE
Confidence 999888899999999999999998 4556666666522 223
Q ss_pred CcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+..|....+|+++.|. |+-|++..|..+..+.+|...|++++...|+ ++++|+++|.+.+||..++..
T Consensus 325 l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 325 LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcc
Confidence 35566788899998886 9999999999999999999999999998877 788999999999999988753
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-34 Score=229.27 Aligned_cols=285 Identities=21% Similarity=0.287 Sum_probs=224.2
Q ss_pred eEEEEEcCC-CCEEEEEE-------CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC-ceEEEEecCCeEEEEE
Q 011216 127 AYVSQFSAD-GSLFVAGF-------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVD 197 (491)
Q Consensus 127 v~~~~~s~d-g~~l~~~~-------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd 197 (491)
=+++.|||- .++||.+. ..|++.|.++..+..+...... .-...+.+++|++.. +.+++++.||+++|||
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 367899993 23444332 4789999999755445443332 233479999999964 6788899999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
+..... .+.. ...|...|.++.|++ +.+.+++++-|++|++|+...++.+.++.+|...|....
T Consensus 90 ~~~~s~-Pi~~--------------~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~ 154 (311)
T KOG0277|consen 90 LTMPSK-PIHK--------------FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA 154 (311)
T ss_pred cCCCCc-chhH--------------HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence 543221 1111 124777999999998 566788889999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
|+|..++++++++.|+++++||++. .++.. .+..|...|.++.|+. +.+.+++|+.|+.|+.||+++..
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~---~gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r------ 224 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRS---PGKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR------ 224 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecC---CCcee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc------
Confidence 9999999999999999999999982 34444 4888999999999987 56789999999999999999864
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-cEEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVA 434 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~ 434 (491)
.++..+.+|... +.+..++|. ...+||+++.|-+++|||...+ ..+.
T Consensus 225 ---------------------------~pl~eL~gh~~A--VRkvk~Sph---~~~lLaSasYDmT~riw~~~~~ds~~e 272 (311)
T KOG0277|consen 225 ---------------------------TPLFELNGHGLA--VRKVKFSPH---HASLLASASYDMTVRIWDPERQDSAIE 272 (311)
T ss_pred ---------------------------ccceeecCCceE--EEEEecCcc---hhhHhhhccccceEEecccccchhhhh
Confidence 567777788743 333444443 3578999999999999998754 4566
Q ss_pred EecCCCCCeeeeEecCC-CCeEEEEECCCcEEEecC
Q 011216 435 ALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~-~~~l~s~~~Dg~i~iw~~ 469 (491)
+...|..-|..+.|++- ..++|++++|+.++||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 67789999999999985 449999999999999984
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-34 Score=267.89 Aligned_cols=312 Identities=15% Similarity=0.148 Sum_probs=214.8
Q ss_pred cccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEe--CCCCceEEEEecCCeEE
Q 011216 118 WPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~-~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~--sp~~~~l~~~~~dg~i~ 194 (491)
+.+. +|.+.|+++.||+||+|||+||.||.|+||.+...+.... +...-.++-+ ...+....+.+..+.+.
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~------~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV------AEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc------cccccchhhhhhhhccccCcccccccccc
Confidence 3445 8999999999999999999999999999999876432110 0001111111 11111111111111000
Q ss_pred EE--ECCCCccccccceec-cccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCC
Q 011216 195 IV--DVGSGTMESLANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 195 iw--d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (491)
=- ..+++.......++. ...-.+-+.....||.+.|.++.|+.++ +|++++.|.+|++|++...+++..| .|.+.
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~Hndf 411 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDF 411 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCe
Confidence 00 000000000000000 0000111223446899999999999776 7999999999999999999998887 89999
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
|+|++|+|.|.++|++|+-||.|+||++ ....+..+..-.+-|++++|.|||++.++|+.+|.+++|+....+..
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI-----~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSI-----SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeec-----CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 9999999999999999999999999999 45666667767789999999999999999999999999999875432
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc-ceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
... .+..-.+. .....+..+.+.|. +..-|++.+.|..|+|||.+..
T Consensus 487 ~~~-----------------------------~I~~~~~Kk~~~~rITG~Q~~p~---~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 487 SDF-----------------------------HIRLHNKKKKQGKRITGLQFFPG---DPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred Eee-----------------------------eEeeccCccccCceeeeeEecCC---CCCeEEEecCCCceEEEeccch
Confidence 221 01110000 01113444444443 3346888889999999999989
Q ss_pred cEEEEecCCCC--CeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 431 EQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 431 ~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.++..|+++.. .-....|+.||++|++++.|..|++|++.....
T Consensus 535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCcc
Confidence 99999986543 345678999999999999999999999866543
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-34 Score=227.01 Aligned_cols=251 Identities=23% Similarity=0.344 Sum_probs=217.9
Q ss_pred eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
.....++++|..+.|+-||+|.++++.|.+|++|+...+.++.... +|...|..++.+.|+..|
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------ghG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------GHGHEVLDAALSSDNSKF 74 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------------CCCceeeecccccccccc
Confidence 3446778899999999999999999999999999999888766554 577799999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
++|+.|..|.+||+.+|+..+++.+|.+.|+.+.|+ .+...+++|+.|.++++||.|.. ..++++.+....+.|.+|
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSI 151 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEEeccccceeEEEEcccC--CCCccchhhhhcCceeEE
Confidence 999999999999999999999999999999999998 88899999999999999999854 567888888888999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
... +..|++|+.||+++.||++.+. ....+-++. +.
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~----------------------------------l~sDy~g~p--------it 187 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGT----------------------------------LSSDYFGHP--------IT 187 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecce----------------------------------eehhhcCCc--------ce
Confidence 886 5589999999999999999843 333333333 23
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCC--eeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
+..||+|++..++++.|+.+++.|-.+|+.++.+++|.+. =.+++++.....+++|+.||.|++||+.......
T Consensus 188 ~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 188 SVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred eEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 3467889999999999999999999999999999999764 3456788888899999999999999998876543
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9e-33 Score=263.79 Aligned_cols=254 Identities=28% Similarity=0.432 Sum_probs=214.1
Q ss_pred CCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe
Q 011216 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 167 ~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~ 246 (491)
.+...|.++.|+|+|+++++++.++.+++|+..+.+. .... ...+|...|.+++|+|+++++++++
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~-------------~l~~h~~~v~~~~fs~d~~~l~s~s 222 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLR-------------ELSGHTRGVSDVAFSPDGSYLLSGS 222 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhc-------------cccccccceeeeEECCCCcEEEEec
Confidence 3456899999999999999999999999999966552 0000 0136888999999999999999999
Q ss_pred cCCeEEEEEC-CCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 247 SDDCIYVYDL-EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 247 ~dg~i~vwd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
.|++|++||+ ..+..++++.+|...|++++|+ +.++++++|+.|++|+|||++ .++++..+.+|.++|++++|+
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~----~~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVR----TGECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEecc----CCeEEEeeeccCCceEEEEEC
Confidence 9999999999 5558889999999999999999 566999999999999999998 789999999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
+++++|++++.|+.|++||+.+.... .+..+.++.... ...+..
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~--------------------------------~~~~~~~~~~~~----~~~~~~ 341 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKL--------------------------------CLKLLSGAENSA----PVTSVQ 341 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCcee--------------------------------eeecccCCCCCC----ceeEEE
Confidence 99999999999999999999984310 233444443222 223446
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCC---eeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP---VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
|+|+++++++++.|+.+++||+..++.+..+.+|... +.+...++.+.++++++.|+.|++|++.+....
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGIL 414 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchh
Confidence 7789999999999999999999999999999988874 445566789999999999999999999975443
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-33 Score=261.73 Aligned_cols=296 Identities=18% Similarity=0.265 Sum_probs=248.6
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
+..-+++|..++|+|...+++++-..|.|.+||..-+..+. ....|.++|..++|+|++.++++|+.|-.|+||+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 34457889999999999999999999999999998774444 346888999999999999999999999999999999
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEec
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (491)
+.++..... ||-+.|..+.|++.-.+++++|.|-+|+||+..+++++..+.+|.-.|.|..|+
T Consensus 82 ~rrclftL~----------------GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh- 144 (1202)
T KOG0292|consen 82 TRRCLFTLL----------------GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH- 144 (1202)
T ss_pred cceehhhhc----------------cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC-
Confidence 888754433 788899999999999999999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCC-------------------------CcceeeeccccccEEEEEEcCCCCEEEEe
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVK-------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~-------------------------~~~~~~~~~~~~~i~~i~~sp~~~~l~~~ 334 (491)
|...+++++|-|.+|+|||+...... .-....+.+|..+|+.++|+|.-..|++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 77789999999999999998632110 11234577999999999999999999999
Q ss_pred eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEE
Q 011216 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+.|..|++|.+...+. -.+.+..+|.. .+..+ .|.|...+++
T Consensus 225 ~DDRqVKlWrmnetKa--------------------------------WEvDtcrgH~n--nVssv----lfhp~q~lIl 266 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETKA--------------------------------WEVDTCRGHYN--NVSSV----LFHPHQDLIL 266 (1202)
T ss_pred CCcceeeEEEeccccc--------------------------------eeehhhhcccC--CcceE----EecCccceeE
Confidence 9999999999876221 22344556653 23333 3555789999
Q ss_pred EEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 415 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+.+.|+.|++||+...+.+.+++...+..+.++-+|..+++++| .|+-+.|+.+....+
T Consensus 267 SnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 267 SNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERP 325 (1202)
T ss_pred ecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCc
Confidence 99999999999999999999998778889999999999988776 466678888875543
No 51
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-31 Score=223.45 Aligned_cols=295 Identities=20% Similarity=0.288 Sum_probs=237.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec--CCeEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHI 195 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~--dg~i~i 195 (491)
..+....+.|.++.|+++|.+|++++.|.++++||..++..+..+. .+...+..++|......++.++. |.+|+.
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~---skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---cccccccEEEEecCCceEEEccCCCCCceEE
Confidence 3344468899999999999999999999999999999997666543 33346888899887777777776 789999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
.++.+.+.++.+. ||...|.+++.+|-+..+++++.|++|++||++..++...+.. ..-..+
T Consensus 85 Lsl~dNkylRYF~----------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~ 146 (311)
T KOG1446|consen 85 LSLHDNKYLRYFP----------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIA 146 (311)
T ss_pred EEeecCceEEEcC----------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcce
Confidence 9999998877765 7999999999999989999999999999999998887666543 233456
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+|. |.|-++|++.....|++||+|..+........+. +.....+.|.|+|||++|+.+...+.+++.|.-++
T Consensus 147 AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------ 219 (311)
T KOG1446|consen 147 AFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG------ 219 (311)
T ss_pred eEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------
Confidence 775 8899999998888999999997643333333333 44677899999999999999999999999998763
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
....++.++....... ....|+||++++++|+.||+|.+|++++|+.+.
T Consensus 220 ----------------------------~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 220 ----------------------------TVKSTFSGYPNAGNLP---LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred ----------------------------cEeeeEeeccCCCCcc---eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 4455555554332221 233677899999999999999999999999999
Q ss_pred EecC-CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 435 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 435 ~~~~-h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+++ +.+++.++.|+|...+++|++ ..+.+|=....+
T Consensus 269 ~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 269 VLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDEDA 306 (311)
T ss_pred EecCCCCCCccccccCCceeeeeecC--ceEEEEeccccc
Confidence 9998 789999999999988888774 568888766544
No 52
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.9e-32 Score=233.32 Aligned_cols=293 Identities=20% Similarity=0.262 Sum_probs=237.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC---ceEEEEecCCeE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIV 193 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~~~~~dg~i 193 (491)
+..--.|.+.|.++... ++.+++|+.||.+++||.... .. ....+|.++|.+++|.-.. ..+++++.|.++
T Consensus 98 pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~---~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SI---KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred ccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eE---EEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 34445689999999988 789999999999999998753 22 3446888899988875433 469999999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC---------------
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--------------- 258 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~--------------- 258 (491)
++|..+.+........ ...||...|.+++..++|..+++|+.|..|.||+..+
T Consensus 172 ~Lw~~~~~~~~~~~~~------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALK------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred EEEEecCchhhhhHHh------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhh
Confidence 9999987765322211 1127999999999999999999999999999999321
Q ss_pred ----------CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC
Q 011216 259 ----------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 259 ----------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~ 328 (491)
+.++..+.+|..+|.++.|+ + ...+++++.|.+|+.||+. .+..+..+.+ ...+.++..+|..
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDle----tg~~~~~~~~-~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLE----TGGLKSTLTT-NKSLNCISYSPLS 312 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEee----cccceeeeec-CcceeEeeccccc
Confidence 23456677999999999997 3 6789999999999999998 6666666653 4678999999999
Q ss_pred CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC
Q 011216 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
++|++|+.|..|++||.++... .-...++.+|.. .+..+.++|.
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~n--wVssvkwsp~--- 356 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKN--WVSSVKWSPT--- 356 (423)
T ss_pred ceeeecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchh--hhhheecCCC---
Confidence 9999999999999999998542 134567778875 3344455554
Q ss_pred CCcEEEEEecCCeEEEEECCCcc-EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
+...|++|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++.+|++||.|.+|+|+.-..
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 56778999999999999999988 999999999999999997 456899999999999987543
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=252.87 Aligned_cols=287 Identities=21% Similarity=0.288 Sum_probs=243.1
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..+.+|.+.|.+++||.|...+++|+ .+.|+||+..+.+++...... .+.+..|.|.++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEE
Confidence 45679999999999999988777774 568999999998777765322 688999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC-----Cee--eE-----EE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKL--SL-----RI 265 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~--~~-----~~ 265 (491)
+.+........ .|.+.|.+++.+||++.+++|+.|.+|++||..- +.. +. +.
T Consensus 441 laS~~l~Eti~----------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 441 LASASLVETIR----------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eehhhhhhhhh----------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 99887655443 4777999999999999999999999999999742 111 11 11
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeC
Q 011216 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~ 345 (491)
..-...|.|+.+| |++.+|+.+--|.+|+||-+. +-+....+.||.-||.|+..+||++.++||+.|.+|++|-+
T Consensus 505 Lel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflD----tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGL 579 (888)
T KOG0306|consen 505 LELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLD----TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGL 579 (888)
T ss_pred EeccccEEEEEEc-CCCcEEEEEeccCeEEEEEec----ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEecc
Confidence 2346789999998 899999999999999999998 77778889999999999999999999999999999999988
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 425 (491)
.-+. +-+.+-+|.. .+... .|-|....+++++.|+.|+-|
T Consensus 580 dFGD----------------------------------CHKS~fAHdD--Svm~V----~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 580 DFGD----------------------------------CHKSFFAHDD--SVMSV----QFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred ccch----------------------------------hhhhhhcccC--ceeEE----EEcccceeEEEecCcceEEee
Confidence 7643 3334445542 22333 455578899999999999999
Q ss_pred ECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 426 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 426 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
|-...+.+..+.+|...|++++.+|+|.+++++|.|..|++|+...
T Consensus 620 Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 620 DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred chhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999999999999999999999765
No 54
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=240.40 Aligned_cols=299 Identities=20% Similarity=0.236 Sum_probs=234.2
Q ss_pred ccCCCCCccccCCCCceEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec
Q 011216 111 YLPVNGPWPVDQTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 189 (491)
+|.......+..-.+.|.+++|||...+ +|+.+ .-.+.||+..+........ .....|.+++|..||++|++|..
T Consensus 13 ~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~s---rFk~~v~s~~fR~DG~LlaaGD~ 88 (487)
T KOG0310|consen 13 YWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFS---RFKDVVYSVDFRSDGRLLAAGDE 88 (487)
T ss_pred hhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHH---hhccceeEEEeecCCeEEEccCC
Confidence 3333334455556789999999997654 44433 4479999988764443332 33447999999999999999999
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEecc
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 268 (491)
.|.|+|+|..+........ +|..++..+.|+| ++..|++|+.|+.+++||+.+......+.+|
T Consensus 89 sG~V~vfD~k~r~iLR~~~----------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 89 SGHVKVFDMKSRVILRQLY----------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred cCcEEEeccccHHHHHHHh----------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 9999999966533333222 5777999999999 4567888899999999999999876688899
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC-cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
++.|.|.+|+|.+++++++|+.||+|++||.+ .. ..+..+ .|..+|..+.+-|.|..+++++.. .+++||+.+
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR----~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~ 226 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTR----SLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTT 226 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEec----cCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecC
Confidence 99999999998889999999999999999998 33 344444 589999999999999999998754 699999986
Q ss_pred CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
+. +.+..+..|....++ ..+..++..|++|+-|+.|++||+
T Consensus 227 G~---------------------------------qll~~~~~H~KtVTc------L~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 227 GG---------------------------------QLLTSMFNHNKTVTC------LRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred Cc---------------------------------eehhhhhcccceEEE------EEeecCCceEeecccccceEEEEc
Confidence 43 333333335433333 344457899999999999999999
Q ss_pred CCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 428 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
.+.+.+..+. -.++|.+++.+|+++.++.|-.||.+.+=+.....+.
T Consensus 268 t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 268 TNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred cceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 8889998886 6789999999999999999999999988866555443
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-32 Score=247.37 Aligned_cols=249 Identities=22% Similarity=0.289 Sum_probs=220.1
Q ss_pred CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
+...|.++.|+|....++++-++|.|.|||.++......+.+.+. +|.+..|-+..+.+++|+.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~----------------PvRa~kfiaRknWiv~GsD 75 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEV----------------PVRAAKFIARKNWIVTGSD 75 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeeccc----------------chhhheeeeccceEEEecC
Confidence 455899999999999999999999999999999887766655443 7889999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-
Q 011216 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG- 326 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp- 326 (491)
|..|+||+..+++.+..+..|.+.|++++.+ |..-+++++|.|-+|++||.. ....+.+.+.+|...|.+++|.|
T Consensus 76 D~~IrVfnynt~ekV~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 76 DMQIRVFNYNTGEKVKTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred CceEEEEecccceeeEEeeccccceeeeeec-CCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceEEEEEEecCC
Confidence 9999999999999999999999999999998 667789999999999999986 45678889999999999999999
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
|.+.+++++-|++|++|.+.. ..+..++++|......+......
T Consensus 152 D~ntFaS~sLDrTVKVWslgs----------------------------------~~~nfTl~gHekGVN~Vdyy~~g-- 195 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGS----------------------------------PHPNFTLEGHEKGVNCVDYYTGG-- 195 (794)
T ss_pred CccceeeeeccccEEEEEcCC----------------------------------CCCceeeeccccCcceEEeccCC--
Confidence 568899999999999999987 35667888888555444332222
Q ss_pred cCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 407 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 407 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
|..||++|+.|..|+|||..+..++.++.+|...|..+.|+|.-++++||+.||+++||+-.+-..
T Consensus 196 --dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 196 --DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred --CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 457999999999999999999999999999999999999999999999999999999999776543
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=224.32 Aligned_cols=252 Identities=24% Similarity=0.328 Sum_probs=213.2
Q ss_pred EeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCE
Q 011216 162 DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 162 ~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 241 (491)
.....+|++.|+.+.|+|+|.+|++|+.|..|.+|++..... .... ..+|++.|..+.|.+|++.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-N~~~--------------lkgHsgAVM~l~~~~d~s~ 104 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-NFWV--------------LKGHSGAVMELHGMRDGSH 104 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-ceee--------------eccccceeEeeeeccCCCE
Confidence 445678999999999999999999999999999999764322 2211 1279999999999999999
Q ss_pred EEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEE
Q 011216 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (491)
+++++.|.+|+.||.++++..+++++|.+-|+.+.-+..+..++.+++.|+++++||+| ....++.+. ....+++
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R----~k~~~~t~~-~kyqltA 179 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR----KKEAIKTFE-NKYQLTA 179 (338)
T ss_pred EEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec----ccchhhccc-cceeEEE
Confidence 99999999999999999999999999999999999776667789999999999999998 666665554 3567899
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEE
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+.|..++..+.+|+-|+.|++||++. +....++.||....+
T Consensus 180 v~f~d~s~qv~sggIdn~ikvWd~r~----------------------------------~d~~~~lsGh~DtIt----- 220 (338)
T KOG0265|consen 180 VGFKDTSDQVISGGIDNDIKVWDLRK----------------------------------NDGLYTLSGHADTIT----- 220 (338)
T ss_pred EEecccccceeeccccCceeeecccc----------------------------------CcceEEeecccCcee-----
Confidence 99999999999999999999999987 467788888884433
Q ss_pred ecCcccCCCcEEEEEecCCeEEEEECCC----ccEEEEecCCC----CCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVS----GEQVAALKYHT----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 402 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+..+++|.++.+-+.|.++++||++. .+++..+.+|. .....++|+|++..+.+|+.|..+++||.....
T Consensus 221 -~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~ 299 (338)
T KOG0265|consen 221 -GLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR 299 (338)
T ss_pred -eEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc
Confidence 336777999999999999999999864 34577777654 345678999999999999999999999987743
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-31 Score=215.07 Aligned_cols=254 Identities=19% Similarity=0.229 Sum_probs=210.6
Q ss_pred EeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC
Q 011216 162 DILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 162 ~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 240 (491)
.....+|.+.+..++|+|- |..|++++.|+.|++|+...+....... ..+.+|+..|.+++|+|.|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~------------vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT------------VLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE------------eccccchheeeeeeecCCCc
Confidence 3445678889999999998 8999999999999999988533211111 12236888999999999999
Q ss_pred EEEEEecCCeEEEEECCCC--eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc
Q 011216 241 ELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
+|++|+.|.++.||.-..+ +++..+.+|...|.|++|+ .+|++||+++.|..|-||.+...+ ...+...++.|...
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqD 152 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQD 152 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeecccccc
Confidence 9999999999999987654 5678899999999999998 899999999999999999987332 56778899999999
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
|..+.|+|...+|++++.|++|++|+-.... .-..++++.+|..
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------------------------------dW~c~~tl~g~~~----- 196 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------------------------------DWECVQTLDGHEN----- 196 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCC-------------------------------CeeEEEEecCccc-----
Confidence 9999999999999999999999999876311 1256788888874
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
..|+.+|++.|..|++++.|++|+||...+.- -..|+.++..++|. ...|+|++.|+.|+++.-...
T Consensus 197 -TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 197 -TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred -eEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCC
Confidence 35667888899999999999999999965221 12478899999998 458999999999999987754
No 58
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=226.43 Aligned_cols=307 Identities=20% Similarity=0.307 Sum_probs=245.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+.+|.+.|+.++-......+.+++.|.+.+||.++++.++.+ ..+|.+.|+++.|++.+.++++++.|++-+||
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHH
Confidence 356789999999999988888999999999999999999976654 57899999999999999999999999999999
Q ss_pred ECC------CCccccccce-------eccc---------c--ccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEE
Q 011216 197 DVG------SGTMESLANV-------TEIH---------D--GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (491)
Q Consensus 197 d~~------~~~~~~~~~~-------~~~~---------~--~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~ 252 (491)
... ......-... .+.. + .+..+.....+|...|.+..|...|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 732 1110000000 0000 0 11112223458999999999999999999999999999
Q ss_pred EEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEE
Q 011216 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~ 332 (491)
+||+++++.+..+.+|....+.++-+ |..+++++.+.|.+.++||++ ..-..+..+++|.+.|+++.|.-+. .++
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~dd-~vV 372 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNTDD-RVV 372 (481)
T ss_pred eeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEecCC-cee
Confidence 99999999999999999999999987 788999999999999999998 2446678899999999999998765 588
Q ss_pred EeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcE
Q 011216 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
+|+.|.+|++||++++. .++.++...+....+ +.+..+..
T Consensus 373 SgSDDrTvKvWdLrNMR---------------------------------splATIRtdS~~NRv-------avs~g~~i 412 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMR---------------------------------SPLATIRTDSPANRV-------AVSKGHPI 412 (481)
T ss_pred ecCCCceEEEeeecccc---------------------------------CcceeeecCCcccee-------EeecCCce
Confidence 99999999999999975 344454444322222 34446778
Q ss_pred EEEEecCCeEEEEECCCccEEEEe-----cCCCCCeeeeEecCCCC--eEEEEECCCcEEEecCCCC
Q 011216 413 IYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 413 l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~~~~--~l~s~~~Dg~i~iw~~~~~ 472 (491)
|+.--.+..|++||+. |..+..+ ++|..-|+|++|..+.. -|++++.|..+.-|++...
T Consensus 413 IAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 8988889999999994 5544444 48999999999987654 6889999999999998764
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-31 Score=244.59 Aligned_cols=327 Identities=17% Similarity=0.184 Sum_probs=257.3
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
.....+.+|..+|+++.|+..|.+||+|+.|+.|.+||+-.... .....+|...|+.+-|..+.++|++++.|+.|+
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G---l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK 174 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG---LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIK 174 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee---eEEeecchHHHhHHhccCCCeEEEEeccCceEE
Confidence 44677889999999999999999999999999999999976532 345578998999999998889999999999999
Q ss_pred EEECCCCcccccccee--------------------------cc-----------------------------------c
Q 011216 195 IVDVGSGTMESLANVT--------------------------EI-----------------------------------H 213 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~--------------------------~~-----------------------------------~ 213 (491)
+||+++..+....... +. +
T Consensus 175 ~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 175 FWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDF 254 (888)
T ss_pred EEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecC
Confidence 9998876542110000 00 0
Q ss_pred cc--------------------------------------c---------------------------------------
Q 011216 214 DG--------------------------------------L--------------------------------------- 216 (491)
Q Consensus 214 ~~--------------------------------------~--------------------------------------- 216 (491)
.. .
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 00 0
Q ss_pred -----------------cc--cc---------CCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc
Q 011216 217 -----------------DF--SA---------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 217 -----------------~~--~~---------~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 268 (491)
.. .. ....||...|.+++++.+...+++|+ .+.+++|+..+.++++++...
T Consensus 335 ~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~ 413 (888)
T KOG0306|consen 335 ENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG 413 (888)
T ss_pred ceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc
Confidence 00 00 00127888899999998887666654 567999999999999998643
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
.+.+..|. |.++++++|...|.+.+||+. ....+....+|.+.|.+++.+||++.+++|+.|.+|++||+.-.
T Consensus 414 --y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdla----S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~ 486 (888)
T KOG0306|consen 414 --YILASKFV-PGDRYIVLGTKNGELQVFDLA----SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLV 486 (888)
T ss_pred --cEEEEEec-CCCceEEEeccCCceEEEEee----hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEE
Confidence 88999998 788999999999999999997 77788888899999999999999999999999999999998653
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
...... ...+..++ |.....+..-+.+..+||||++||++=.|.+|+||-+.
T Consensus 487 ~~~~gt---------------------------~~k~lsl~-~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 487 VSVPGT---------------------------QKKVLSLK-HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred eccCcc---------------------------cceeeeec-cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 221000 01111111 11112223334556789999999999999999999999
Q ss_pred CccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCCCC
Q 011216 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLN 480 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~ 480 (491)
+-+..-.+.+|.-||.++..|||+++++|||.|.+|+||=++-++.......
T Consensus 539 tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 539 TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 9999999999999999999999999999999999999999998887655444
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=252.25 Aligned_cols=282 Identities=24% Similarity=0.343 Sum_probs=244.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
.+...+.|..|. ..++++++.+++|++|+..++..+.. ...+|.+.|.++++..-+..|++|+.|.++++||..+|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 467888999998 56799999999999999999854443 35789999999999887899999999999999999999
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (491)
.+..... +|...+.++... ...+++|+.|.+|++|++.++..+..+.+|.++|+++...
T Consensus 282 ~C~~~l~----------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--- 340 (537)
T KOG0274|consen 282 ECTHSLQ----------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--- 340 (537)
T ss_pred cEEEEec----------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---
Confidence 9877665 577788888775 4468889999999999999999999998899999999985
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccc
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
+.++++|+.|++|++||+. ..+++..+.+|...|+++.+.+. .++++|+.|+.|++||+++..
T Consensus 341 ~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------------ 403 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------------ 403 (537)
T ss_pred CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh------------
Confidence 7899999999999999998 89999999999999999988765 799999999999999999831
Q ss_pred eeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC-CC
Q 011216 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-HT 440 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~ 440 (491)
+++.++.+|...... ....+++|++++.|+.|++||..+++++..+.+ |.
T Consensus 404 ---------------------~c~~tl~~h~~~v~~--------l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~ 454 (537)
T KOG0274|consen 404 ---------------------KCIHTLQGHTSLVSS--------LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHV 454 (537)
T ss_pred ---------------------hhhhhhcCCcccccc--------cccccceeEeccccccEEEeecccCceeeeeccCCc
Confidence 466777777754422 222578999999999999999999999999998 67
Q ss_pred CCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 441 ~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
+.|..+++. ...+++++.||.+.+||++++....
T Consensus 455 ~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 455 GGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 889998886 5678899999999999999887554
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=9.7e-32 Score=258.41 Aligned_cols=317 Identities=19% Similarity=0.190 Sum_probs=234.3
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCC--------e-EEEEEeeccCCceeEEEeEeCCCCceEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~--~dg~i~vw~~~~~--------~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~~ 186 (491)
.-+.+++..|+++..+|||..+|+|+ .||.++||+.+.- . ..........|.+.|+|+.|+|||++||+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 34455677799999999999999999 8999999997531 1 11223345678889999999999999999
Q ss_pred EecCCeEEEEECCCCccccccceec-ccccccc-ccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 011216 187 ASMSPIVHIVDVGSGTMESLANVTE-IHDGLDF-SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
|++|+.|.||..........+.... .+....+ ......+|...|.+++|+|++.+|++++.|++|.+||..+.+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 9999999999987411000110000 0000000 0112346999999999999999999999999999999999999999
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc------ccEEEEEEcCCCCEEEEeeC--
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYLISNGK-- 336 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~i~~i~~sp~~~~l~~~~~-- 336 (491)
+.+|.+.|..+.|. |-|++|++-+.|++|+||+.. .....+.+.++. ..+..+.|+|||++|++...
T Consensus 167 l~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~----dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTS----DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eecccccccceEEC-CccCeeeeecCCceEEEEEcc----cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 99999999999995 899999999999999999976 334444444332 34778999999999997532
Q ss_pred --CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc-C-----
Q 011216 337 --DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS-T----- 408 (491)
Q Consensus 337 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~----- 408 (491)
-..+.|.+-.+. ..-..+-||..... -..|+|.+- .
T Consensus 242 ~~~~~~~IieR~tW----------------------------------k~~~~LvGH~~p~e--vvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 242 GGKSTIAIIERGTW----------------------------------KVDKDLVGHSAPVE--VVRFNPKLFERNNKNG 285 (942)
T ss_pred CCcceeEEEecCCc----------------------------------eeeeeeecCCCceE--EEEeChHHhccccccC
Confidence 234666554431 23344555654222 233444321 0
Q ss_pred ---CC----cEEEEEecCCeEEEEECCCccEEEEec-CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 409 ---GQ----KYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 409 ---~~----~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
.. ..+|+|+.|+.|-||.....+++..+. -....|.+++|+|||..|..+|.||+|.+..+...+-.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 11 168899999999999998888876653 34578999999999999999999999999999876543
No 62
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.7e-33 Score=235.53 Aligned_cols=303 Identities=13% Similarity=0.143 Sum_probs=239.9
Q ss_pred cccccCCCCCccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEE
Q 011216 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 108 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~ 186 (491)
+.|.+.....-.|.+|.+.|+|++=+|.. ..+|+|+.||.|+|||+....+.. ....|.+.|..|++.. ..+++
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~--~~~~t 124 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ--TSFFT 124 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc--cceEE
Confidence 34444444455679999999999999987 789999999999999999864444 4468888999999977 67889
Q ss_pred EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 011216 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
++.|.+|+.|.++..-. .... -.+.+..+.-+..+..+++++.+ |.|||.....++..+.
T Consensus 125 vgdDKtvK~wk~~~~p~-~til-----------------g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms 184 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPL-HTIL-----------------GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMS 184 (433)
T ss_pred ecCCcceeeeeccCCcc-eeee-----------------ccccccccccccccccccccCce--eeecccccCCccceee
Confidence 99999999999876311 1110 11245566666666778888754 9999999999999998
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
-....|.++.|+|....+|+++..|+.|.+||++ ...++..+.. .-.-+.|+|+|++-.++++..|..++.||++
T Consensus 185 wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R----~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 185 WGADSISSVKFNPVETSILASCASDRSIVLYDLR----QASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred cCCCceeEEecCCCcchheeeeccCCceEEEecc----cCCccceeee-eccccceecCccccceeeccccccceehhhh
Confidence 8888999999998888999999999999999999 5555554431 2334679999988889999999999999999
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
.+. .++..+.+|. ..+.+.+|||.|+-+++|+.|.+|+||.
T Consensus 260 ~l~---------------------------------~p~~v~~dhv------sAV~dVdfsptG~EfvsgsyDksIRIf~ 300 (433)
T KOG0268|consen 260 NLS---------------------------------RPLNVHKDHV------SAVMDVDFSPTGQEFVSGSYDKSIRIFP 300 (433)
T ss_pred hhc---------------------------------ccchhhcccc------eeEEEeccCCCcchhccccccceEEEee
Confidence 865 5566666665 3345567888999999999999999999
Q ss_pred CCCccEEEEec-CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCCC
Q 011216 427 LVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL 479 (491)
Q Consensus 427 ~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 479 (491)
...+.....+. .-...|.++.||.|.+++++||+|+.|++|.-...++..+..
T Consensus 301 ~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 301 VNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVIT 354 (433)
T ss_pred cCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCC
Confidence 98776554442 224579999999999999999999999999987766554433
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.1e-30 Score=202.47 Aligned_cols=291 Identities=22% Similarity=0.300 Sum_probs=228.3
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCC------C------eEEEEEeeccCCceeEEEeEeCCCCceEEEEecC
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------G------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~------~------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 190 (491)
-...|.+++|+|.|.+.|+|+...+++|-.... + .........+.|++.|.|.+|+|+|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 356799999999999999999999998875432 1 0111223456889999999999999999999999
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC----CCEEEEEe-cCCeEEEEECCCCeeeEEE
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~~~~-~dg~i~vwd~~~~~~~~~~ 265 (491)
.+|++...+...+...-. .++| .-|.+.|..++|-.+ +..|++++ .|..|++-|...++....+
T Consensus 111 k~ik~l~fn~dt~~~~g~------dle~-----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGH------DLEF-----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ceEEEEecccccccccCc------ceee-----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999998776544432211 1111 136678999999753 45666655 4677889999999999999
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc-------ccccEEEEEEcCCCCEEEEeeCCC
Q 011216 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISNGKDQ 338 (491)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~i~~sp~~~~l~~~~~dg 338 (491)
.+|.+.|.++-- -++-++++|+.|.+|++||++ ....+..+.. ....|.+++..|.|++|++|..|.
T Consensus 180 sghtghilalys--wn~~m~~sgsqdktirfwdlr----v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 180 SGHTGHILALYS--WNGAMFASGSQDKTIRFWDLR----VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cCCcccEEEEEE--ecCcEEEccCCCceEEEEeee----ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 999999988742 458899999999999999998 4455544431 235689999999999999999999
Q ss_pred cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec
Q 011216 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 418 (491)
...+||++. ++.++.+..|..... +..|||...|+++++.
T Consensus 254 sc~lydirg----------------------------------~r~iq~f~phsadir------~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 254 SCMLYDIRG----------------------------------GRMIQRFHPHSADIR------CVRFSPGAHYLLTCSY 293 (350)
T ss_pred ceEEEEeeC----------------------------------CceeeeeCCCcccee------EEEeCCCceEEEEecc
Confidence 999999998 577888888874332 3367888999999999
Q ss_pred CCeEEEEECCCc----cEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 419 DSCVYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 419 dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.++.+|-++
T Consensus 294 d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 294 DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999998532 1233445689999999999999999999999999999875
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-32 Score=252.65 Aligned_cols=284 Identities=20% Similarity=0.299 Sum_probs=226.2
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
..|..++|+|....++++-..|.|++||..-+.++..+. .|.++|..+.|+|++.++++|+.|.
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd----------------eHdGpVRgv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD----------------EHDGPVRGVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh----------------ccCCccceeeecCCCCeEEecCCcc
Confidence 468899999999999999999999999998777654432 5888999999999999999999999
Q ss_pred eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC
Q 011216 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~ 329 (491)
.|+||+..+.+++.++.+|-+.|+.+.|+ +.--+++++|.|.+|+||+.. +.+++..+.+|...|.|..|+|...
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FH-heyPWIlSASDDQTIrIWNwq----sr~~iavltGHnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFH-HEYPWILSASDDQTIRIWNWQ----SRKCIAVLTGHNHYVMCAQFHPTED 148 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeecc-CCCceEEEccCCCeEEEEecc----CCceEEEEecCceEEEeeccCCccc
Confidence 99999999999999999999999999998 777899999999999999998 8899999999999999999999999
Q ss_pred EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCC-cccccCCCCCeeEEEcccceeeeeEEEEecCcccC
Q 011216 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ-ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
.++++|-|.+|++||+............ ..... ...+. ...+..+..-.-..++||. +.+..+ +|.|
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~---~e~~~---~~~~~~~dLfg~~DaVVK~VLEGHD--RGVNwa----Afhp 216 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGS---LEDQM---RGQQGNSDLFGQTDAVVKHVLEGHD--RGVNWA----AFHP 216 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCC---chhhh---hccccchhhcCCcCeeeeeeecccc--cccceE----EecC
Confidence 9999999999999999875443222110 00000 00111 1111112223344567777 333333 4555
Q ss_pred CCcEEEEEecCCeEEEEECCCcc--EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCCCCccceEE
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 486 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~ 486 (491)
.-.+|++|+.|..|++|.+..-+ .+.+.++|.+.|.++-|+|...+++|.|.|++|+|||+..... ....+...
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----v~tfrren 292 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----VQTFRREN 292 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc----eeeeeccC
Confidence 67899999999999999986544 3566789999999999999999999999999999999976532 33444445
Q ss_pred eeec
Q 011216 487 RQFY 490 (491)
Q Consensus 487 ~~f~ 490 (491)
.+||
T Consensus 293 dRFW 296 (1202)
T KOG0292|consen 293 DRFW 296 (1202)
T ss_pred CeEE
Confidence 5555
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-30 Score=238.14 Aligned_cols=278 Identities=20% Similarity=0.263 Sum_probs=225.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccc
Q 011216 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (491)
-+.|+ ..+.||+|.. ..|++|+..++.... +.... ...|+++.|+++|++|++|..+|.|.|||..+.+......
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~-l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTE-LCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEE-eEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 35788 4457777754 479999999885332 22222 6689999999999999999999999999998776544433
Q ss_pred eeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE-EeccCCCeEEEEEecCCCCEEEE
Q 011216 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIYS 287 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~l~s 287 (491)
. .|...|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..+.|+ ++++++++
T Consensus 257 ~---------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lAS 318 (484)
T KOG0305|consen 257 G---------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLAS 318 (484)
T ss_pred C---------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeecc
Confidence 1 267799999998 66799999999999999998876655 77899999999998 89999999
Q ss_pred EeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEee--CCCcEEEeeCCCCCCccccccCcccceee
Q 011216 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 288 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
|+.|+.+.|||.. ...+...+..|...|.+++|+|- ..+||+|+ .|+.|++||..++.
T Consensus 319 GgnDN~~~Iwd~~----~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~--------------- 379 (484)
T KOG0305|consen 319 GGNDNVVFIWDGL----SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA--------------- 379 (484)
T ss_pred CCCccceEeccCC----CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------------
Confidence 9999999999996 77888899999999999999994 56788764 68999999998743
Q ss_pred ceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE--EecCCeEEEEECCCccEEEEecCCCCC
Q 011216 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDSCVYVYDLVSGEQVAALKYHTSP 442 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~ 442 (491)
.+........ +.++.|++..+-|++ |..++.|.||+..+.+.+..+.+|...
T Consensus 380 -------------------~i~~vdtgsQ-------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R 433 (484)
T KOG0305|consen 380 -------------------RIDSVDTGSQ-------VCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR 433 (484)
T ss_pred -------------------EecccccCCc-------eeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence 3333332221 233356666655554 345779999999999999999999999
Q ss_pred eeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 443 v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
|..++++|||..+++|+.|.++++|++-+..+
T Consensus 434 Vl~la~SPdg~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 434 VLYLALSPDGETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred eEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence 99999999999999999999999999988643
No 66
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.3e-30 Score=244.87 Aligned_cols=279 Identities=18% Similarity=0.207 Sum_probs=211.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----------EeeccCCceeEEEeEeCC-CCceEEEEecC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----------DILAKSLRWTVTDTSLSP-DQRHLVYASMS 190 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~----------~~~~~~~~~~v~~l~~sp-~~~~l~~~~~d 190 (491)
.+-..|.....++|+..+++++.+.....|+...+..+.. .....+|.+.|.+++|+| ++++|++++.|
T Consensus 18 ~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 18 RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 3455667777888877788888887778887655422211 112457888999999999 88999999999
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEEeccC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
++|++||+.++....... -......+|...|.+++|+|++ ++|++++.|+.|+|||+.+++....+.+|.
T Consensus 98 gtIkIWdi~~~~~~~~~~---------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNIS---------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred CEEEEEecCCCccccccC---------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 999999997653211100 0011123688899999999975 689999999999999999999888898999
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc-EEEEEEcCCCCEEEEee----CCCcEEEee
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG----KDQAIKLWD 344 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~~i~~sp~~~~l~~~~----~dg~i~iwd 344 (491)
..|.+++|+ +++++|++++.|+.|++||++ .+..+..+.+|... +..+.|.+++..+++++ .|+.|++||
T Consensus 169 ~~V~sla~s-pdG~lLatgs~Dg~IrIwD~r----sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWD 243 (493)
T PTZ00421 169 DQITSLEWN-LDGSLLCTTSKDKKLNIIDPR----DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWD 243 (493)
T ss_pred CceEEEEEE-CCCCEEEEecCCCEEEEEECC----CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEe
Confidence 999999998 789999999999999999998 67777788888765 45678899888877654 478999999
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~ 423 (491)
+++... ++.....+.. .....+.|++++++|++++. |+.|+
T Consensus 244 lr~~~~---------------------------------p~~~~~~d~~-----~~~~~~~~d~d~~~L~lggkgDg~Ir 285 (493)
T PTZ00421 244 TRKMAS---------------------------------PYSTVDLDQS-----SALFIPFFDEDTNLLYIGSKGEGNIR 285 (493)
T ss_pred CCCCCC---------------------------------ceeEeccCCC-----CceEEEEEcCCCCEEEEEEeCCCeEE
Confidence 987432 1222211110 11233467789999998874 99999
Q ss_pred EEECCCccEEEEecC-CCCCeeeeEecCCC
Q 011216 424 VYDLVSGEQVAALKY-HTSPVRDCSWHPSQ 452 (491)
Q Consensus 424 iwd~~~~~~~~~~~~-h~~~v~~~~~s~~~ 452 (491)
+||+.+++++..+.. +..++..++|.|.-
T Consensus 286 iwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 286 CFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 999999988776653 45678899998854
No 67
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=219.72 Aligned_cols=311 Identities=16% Similarity=0.173 Sum_probs=223.3
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-----eEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCC
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSP 191 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg 191 (491)
-.|.+|.+.|++++||.||++||+++.|++|+||++..- ..+..... .+..+.+.|+||-+.+++.. ...
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCC
Confidence 467899999999999999999999999999999998752 11111111 12477899999987666554 455
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCC
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (491)
++++|.+...+--.........+.+.| ...|...+..+-.-.++.+|++++.|..|.+|++. |+.+..+......
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred EEEEEEeeecccCCCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 899998753322111111001111111 12466678888888889999999999999999998 8888888776667
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCcccc----CCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
-...+.+ |+|+++++++..-.|++|.+--.. ..-..+..+.+|...|..++|+|+...+++.+.||.++|||..-
T Consensus 231 n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 231 NYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred ccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 7778887 899999999999999999873111 12235567899999999999999999999999999999999865
Q ss_pred CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc--cceeeeeEEEEecCcccCCCcEEEEEecCCeEEEE
Q 011216 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 425 (491)
.....+ +. ..++.... +....... ....+|+|+.||... ...+.+|
T Consensus 310 rY~~~q-------------------Dp--------k~Lk~g~~pl~aag~~p~----RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 310 RYEAGQ-------------------DP--------KILKEGSAPLHAAGSEPV----RLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred eEecCC-------------------Cc--------hHhhcCCcchhhcCCCce----EEEeCCCCcEEEeec-CCceEEE
Confidence 221110 00 11111100 00001111 235677899888765 4569999
Q ss_pred ECCCccEEEEec-CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 426 DLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 426 d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
..++|+....++ .|...|.+++|+++|++++|++ |..+++..-..
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntp 403 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTP 403 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCC
Confidence 999998877765 7999999999999999999997 67788876433
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.4e-30 Score=262.68 Aligned_cols=274 Identities=15% Similarity=0.187 Sum_probs=212.6
Q ss_pred CCeEEEEECCCCeEEEEE--eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCC
Q 011216 145 ASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
+|.+++|+.......... .....|...|.+++|+|++++|++|+.|+.|+||+........... + ....
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~----~----~~~~- 527 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI----H----YPVV- 527 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc----c----cceE-
Confidence 677888888764322211 1123477889999999999999999999999999976421100000 0 0000
Q ss_pred CCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcc
Q 011216 223 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 301 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~ 301 (491)
...+...+.+++|++ ++.+|++++.||.|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.|++|++||++
T Consensus 528 ~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~- 606 (793)
T PLN00181 528 ELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN- 606 (793)
T ss_pred EecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-
Confidence 001234789999987 578999999999999999999999999999999999999997788999999999999999997
Q ss_pred ccCCCcceeeeccccccEEEEEEc-CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCC
Q 011216 302 LNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~i~~s-p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
.+..+..+..+ ..+.++.|+ +++.+|++|+.|+.|++||++...
T Consensus 607 ---~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~------------------------------- 651 (793)
T PLN00181 607 ---QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK------------------------------- 651 (793)
T ss_pred ---CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------------------------------
Confidence 56666666644 678999995 579999999999999999998632
Q ss_pred CCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC------ccEEEEecCCCCCeeeeEecCCCCe
Q 011216 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS------GEQVAALKYHTSPVRDCSWHPSQPM 454 (491)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~s~~~~~ 454 (491)
..+..+.+|..... .. .|. ++.+|++++.|+.|++||+.. ..++..+.+|...+..++|+|++.+
T Consensus 652 --~~~~~~~~h~~~V~--~v----~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~ 722 (793)
T PLN00181 652 --LPLCTMIGHSKTVS--YV----RFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY 722 (793)
T ss_pred --ccceEecCCCCCEE--EE----EEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE
Confidence 23444555653222 22 233 578999999999999999974 3577889999999999999999999
Q ss_pred EEEEECCCcEEEecCCCC
Q 011216 455 LVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 455 l~s~~~Dg~i~iw~~~~~ 472 (491)
|++|+.||.|++|+....
T Consensus 723 lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 723 IATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999997644
No 69
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-30 Score=215.55 Aligned_cols=301 Identities=16% Similarity=0.240 Sum_probs=231.8
Q ss_pred ccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCe------------EEEEEeeccCCceeEEEeEeCC-CCce
Q 011216 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSP-DQRH 183 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~l~~sp-~~~~ 183 (491)
.....|.+.|+++.+.+ .|+|+++|+.||.|.|||+++.. ++.......+|+..|.++.|-| |...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 34567899999999988 68999999999999999997542 1112223457888999999999 5567
Q ss_pred EEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---CCEEEEEecCCeEEEEECCCCe
Q 011216 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
+.+++.|.+++|||..+-+....++++. .|++-+++|- ..++++|..+-.|++-|+.+|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~-----------------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEG-----------------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCc-----------------eeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 8889999999999999887765555443 6888888883 4578888889999999999999
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc-----------CCCcceeeeccccccEEEEEEcCCCC
Q 011216 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-----------VKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~i~~i~~sp~~~ 329 (491)
....+.+|.+.|.++.|+|..+-.|++|+.||.|++||+|... .....+..-..|.+.+..++|+.++.
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~ 259 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR 259 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence 9999999999999999998888889999999999999998321 01111222446888999999999999
Q ss_pred EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC
Q 011216 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
++++++.|..+++|+..++....... +..+..-+.+.. .. +. +. +
T Consensus 260 ~l~~~gtd~r~r~wn~~~G~ntl~~~--------------------------g~~~~n~~~~~~-~~-~~---~~----~ 304 (397)
T KOG4283|consen 260 YLASCGTDDRIRVWNMESGRNTLREF--------------------------GPIIHNQTTSFA-VH-IQ---SM----D 304 (397)
T ss_pred hhhhccCccceEEeecccCccccccc--------------------------ccccccccccce-EE-Ee---ec----c
Confidence 99999999999999998865432210 011111000000 00 00 11 2
Q ss_pred CcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 410 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
...++.--.++.+.++++-++..+..+..|-..|.+.++-|+-+...++..|+.|..|-..
T Consensus 305 s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 305 SDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred cceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 2333333345889999999999999999999999999999999999999999999999873
No 70
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.4e-31 Score=228.43 Aligned_cols=305 Identities=17% Similarity=0.181 Sum_probs=238.2
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--------------ec-cCCceeEEEeEeCCCC
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ 181 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~--------------~~-~~~~~~v~~l~~sp~~ 181 (491)
...+..|.-+|.|++++||++++++++.+|+|.-|++.++....... .. ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 35667899999999999999999999999999999998885331111 11 2677889999999999
Q ss_pred ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee
Q 011216 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
+||++|+.|..|.||+..+.+....+. +|.+.|.+++|-.....|++++.|+.|++|+++....
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc----------------ccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 999999999999999999987655532 6888999999998888999999999999999999999
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEE
Q 011216 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~ 341 (491)
+.++.+|.+.|..|... ..++.+-+|+.|+++++|++. ......+.++.+.+-|++|-. ..++++|+.+|.|.
T Consensus 279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~-----eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIP-----EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIA 351 (479)
T ss_pred HHHHhCCccceeeechh-cccceEEeccccceeEEEecc-----ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEE
Confidence 99999999999999987 667788788899999999994 444556778888999999984 46899999999999
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCe
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 421 (491)
+|++.+.+........+ +....... ........+++..|...++|+|+.+|.
T Consensus 352 LWs~~KKkplf~~~~AH---------------------gv~~~~~~-------~~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAH---------------------GVIPELDP-------VNGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred EeeecccCceeEeeccc---------------------cccCCccc-------cccccceeeeEecccCceEEecCCCCc
Confidence 99998855433221100 00000000 000023344556678899999999999
Q ss_pred EEEEECCCc----cEEEEecCCCCCeeeeEecCCCCeEEE-EECCCcEEEecCCCCC
Q 011216 422 VYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQPMLVS-SSWDGDVVRWEFPGNG 473 (491)
Q Consensus 422 i~iwd~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~Dg~i~iw~~~~~~ 473 (491)
|++|-+..+ +++..+. -.+-|++++|+++|+.|++ .+..-.+--|-.....
T Consensus 404 vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 404 VRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred eEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence 999999877 4455555 5678999999999995554 4566666666655443
No 71
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9e-31 Score=240.01 Aligned_cols=338 Identities=23% Similarity=0.261 Sum_probs=241.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-----------CceEEEEecCCeEEE
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVHI 195 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----------~~~l~~~~~dg~i~i 195 (491)
..++.|++....|.+...|..++|||+..-.++.+....-.|...|.++.--|- ...+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 357889999999999999999999999987666665555566667777665441 135789999999999
Q ss_pred EECCCCccccccc----------eecccccc-----------ccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEE
Q 011216 196 VDVGSGTMESLAN----------VTEIHDGL-----------DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (491)
Q Consensus 196 wd~~~~~~~~~~~----------~~~~~~~~-----------~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vw 254 (491)
|+++.+....+.. +....... +......-+....+.+++.+|+|++|++|..-|.++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9998743222211 00000000 00111112446689999999999999999999999999
Q ss_pred ECCCCeeeEEEeccCCCeEEEEEecC--CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC--CE
Q 011216 255 DLEANKLSLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RY 330 (491)
Q Consensus 255 d~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--~~ 330 (491)
++...+....+..|...|.|+.|+-| ...+|++++.|..|.|||+. .+..++..+.+|...|+++.|--+| ..
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~---rny~l~qtld~HSssITsvKFa~~gln~~ 563 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK---RNYDLVQTLDGHSSSITSVKFACNGLNRK 563 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc---cccchhhhhcccccceeEEEEeecCCceE
Confidence 99999988889999999999999844 35789999999999999985 3556777888888888888887666 56
Q ss_pred EEEeeCCCcEEEeeCCCCCCccccccCcc-cceeeceeecCCC------------CcccccCCCCCeeEEEccccee-ee
Q 011216 331 LISNGKDQAIKLWDIRKMSSNASCNLGFR-SYEWDYRWMDYPP------------QARDLKHPCDQSVATYKGHSVL-RT 396 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~ 396 (491)
+++++.|+.|.+=-.++......+..... .....+..|...| ..+.+....++..+.|++.... ..
T Consensus 564 MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 564 MISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCc
Confidence 77777776554322221111111100000 0000011111222 2223333445667777765433 45
Q ss_pred eEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
+++.... |.|.|||+.+.|.++.++|..+|+++.+..+|...|+.+.|.+|.+.|++.+.||.|.||.++.
T Consensus 644 lIKv~lD----PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 644 LIKVILD----PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eEEEEEC----CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 5665544 4799999999999999999999999999999999999999999999999999999999999875
No 72
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-30 Score=220.93 Aligned_cols=286 Identities=16% Similarity=0.229 Sum_probs=220.4
Q ss_pred eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
.....|...|.+++.+|+.+++++|+.|..-.+|++.++...... .+|+..|+++.|+.+|.+|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el----------------tgHKDSVt~~~FshdgtlL 121 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL----------------TGHKDSVTCCSFSHDGTLL 121 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe----------------cCCCCceEEEEEccCceEE
Confidence 345678889999999999999999999999999999998843322 2688899999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
|+|+.+|.|+||...++.....+...-..+.-+.|+ |...+|+.|+.||.+-+|.+. +....+.+.+|..++++=
T Consensus 122 ATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip----~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIP----SQALCKVMSGHNSPCTCG 196 (399)
T ss_pred EecCCCccEEEEEcccCceEEEeecccCceEEEEec-ccccEEEeecCCCcEEEEECC----CcceeeEecCCCCCcccc
Confidence 999999999999999999888887677889999998 689999999999999999997 657888999999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCc------------ccccCCCCCeeEEEcc
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------------RDLKHPCDQSVATYKG 390 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 390 (491)
.|.|+|+.++++..||+|++||+.+.++........ .....++...... .......++.+....+
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccc---cCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence 999999999999999999999999976544332110 0000011111110 1111112222222221
Q ss_pred cce-----eeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEE
Q 011216 391 HSV-----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 391 ~~~-----~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~ 465 (491)
... ......+.-+..+|..-.+.|+|+-||+|.|||+...++.+.+. |..+|+.+.|-+ ..+|++++.||.|+
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVR 351 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEE
Confidence 000 00111122233455567789999999999999999888887776 888899999998 67999999999999
Q ss_pred EecCCCCCC
Q 011216 466 RWEFPGNGE 474 (491)
Q Consensus 466 iw~~~~~~~ 474 (491)
.||.+++..
T Consensus 352 ~wDaRtG~l 360 (399)
T KOG0296|consen 352 QWDARTGQL 360 (399)
T ss_pred eeeccccce
Confidence 999998864
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=6.3e-30 Score=232.97 Aligned_cols=247 Identities=30% Similarity=0.454 Sum_probs=209.8
Q ss_pred cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
.+|..+|.+++|+|++++|++++.+|.|.+|++.+++...... .|...+..+.|+|++++++++
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~ 69 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK----------------GHTGPVRDVAASADGTYLASG 69 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe----------------cCCcceeEEEECCCCCEEEEE
Confidence 4677899999999999999999999999999998776322211 355578899999999999999
Q ss_pred ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
+.+|.|++||+.+++....+..|...+.++.|+ ++++++++++.|+.|.+||++ ..+....+..|...+.+++|+
T Consensus 70 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 70 SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred cCCCeEEEEEcCcccceEEEeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECC----CcEEEEEeccCCCcEEEEEEc
Confidence 999999999999988888888999999999998 567888888889999999997 667777888899999999999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
|++.++++++.|+.|++||++.. +.+..+..+.. ...++.
T Consensus 145 ~~~~~l~~~~~~~~i~i~d~~~~----------------------------------~~~~~~~~~~~------~i~~~~ 184 (289)
T cd00200 145 PDGTFVASSSQDGTIKLWDLRTG----------------------------------KCVATLTGHTG------EVNSVA 184 (289)
T ss_pred CcCCEEEEEcCCCcEEEEEcccc----------------------------------ccceeEecCcc------ccceEE
Confidence 99999998888999999999863 33334443331 123346
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
|+|+++.+++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++.||.|++|++..+.
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 77789899999999999999999999999998899999999999998889888889999999998654
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=8.4e-30 Score=210.94 Aligned_cols=279 Identities=14% Similarity=0.130 Sum_probs=218.0
Q ss_pred CCceEEEEEcC-CCCEEEEEECCCeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
.+.|.+++||| ...++++++.||+||+|+++.. .... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 78999999999 5567779999999999999873 2222 344678889999999999999999999999999999999
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCC--EEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEec
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (491)
+...+. .|..+|.++.|-+... .|++|+-|.+|+.||.+...++.++ .-.+.+.++..-
T Consensus 105 Q~~~v~-----------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-~LPeRvYa~Dv~- 165 (347)
T KOG0647|consen 105 QVSQVA-----------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-QLPERVYAADVL- 165 (347)
T ss_pred Ceeeee-----------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-eccceeeehhcc-
Confidence 765443 3777999999988655 8999999999999999998888777 345667777653
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcc
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
..+++.+..+..|.+|+++......+.... ...-.+.+|+..+|....+.|+..|.+.|..+.....
T Consensus 166 --~pm~vVata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~--------- 232 (347)
T KOG0647|consen 166 --YPMAVVATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP--------- 232 (347)
T ss_pred --CceeEEEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEEecCCCCc---------
Confidence 457888999999999999733222221111 1234578999988888889999999999999887432
Q ss_pred cceeeceeecCCCCcccccCCCCCeeEEEcccceee---eeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
..-.+|+.|+... ..+-.+.+++|.|.-..|++++.||+..+||-.....++..
T Consensus 233 -----------------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 233 -----------------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred -----------------------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc
Confidence 1223444444211 11233445567777889999999999999999888889898
Q ss_pred cCCCCCeeeeEecCCCCeEEEEE
Q 011216 437 KYHTSPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~~~l~s~~ 459 (491)
+.|..+|++++|+.+|.++|-+.
T Consensus 290 ~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 290 ETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CcCCCccceeEecCCCCEEEEEe
Confidence 99999999999999999887653
No 75
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=1e-29 Score=220.18 Aligned_cols=283 Identities=17% Similarity=0.245 Sum_probs=234.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
...+.++...|..+.+++|+.|..+.++|...+ +.+....+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 356788888888789999999999999999887 33446689999999999999999999999999999999876553
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec--cCCCeEEEEEecCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDES 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~ 281 (491)
..... .|..+|+.+..+|.|.||++++.|++..+.|+.++..+..... ..-.+++.+|+ ||
T Consensus 296 ~~~~~----------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pD 358 (506)
T KOG0289|consen 296 PTSSR----------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PD 358 (506)
T ss_pred ccccc----------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEc-CC
Confidence 22222 3667999999999999999999999999999999998766643 22458999998 89
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccc
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
|.+|.+|..||.|+|||+. ....+..+.+|.++|..|+|+.+|-+|++++.|+.|++||+|....
T Consensus 359 gLifgtgt~d~~vkiwdlk----s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----------- 423 (506)
T KOG0289|consen 359 GLIFGTGTPDGVVKIWDLK----SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----------- 423 (506)
T ss_pred ceEEeccCCCceEEEEEcC----CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----------
Confidence 9999999999999999998 6778889999999999999999999999999999999999998542
Q ss_pred eeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC--CccEEEEecCC
Q 011216 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV--SGEQVAALKYH 439 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~--~~~~~~~~~~h 439 (491)
+.++...... .+.. ..|.+.|.+|+.++.|=.|++++-. +...+..+..|
T Consensus 424 -----------------------~kt~~l~~~~-~v~s----~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 424 -----------------------FKTIQLDEKK-EVNS----LSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred -----------------------cceeeccccc-ccee----EEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 2222222211 1222 2455579999999888777777743 45677788889
Q ss_pred CCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 440 ~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
.+..+.+.|....++++++|.|..++++.+
T Consensus 476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccceeeecccceEEeeccchhheEEeec
Confidence 999999999999999999999999998865
No 76
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=2.5e-31 Score=233.43 Aligned_cols=254 Identities=19% Similarity=0.261 Sum_probs=210.6
Q ss_pred EeeccCCceeEEEeEeCC-CCceEEEEecCCeEEEEECCC-CccccccceeccccccccccCCCCCceecEEEEEEcCCC
Q 011216 162 DILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 162 ~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 239 (491)
.....+|...|+++.|.| .+.+|++++.|+.|+||++.. +.++..+. +|..+|.+++|+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~----------------gH~k~Vrd~~~s~~g 270 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK----------------GHRKPVRDASFNNCG 270 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh----------------cchhhhhhhhccccC
Confidence 345678999999999999 889999999999999999876 55544433 688899999999999
Q ss_pred CEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccE
Q 011216 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
..+++++.|+.|++||+++|+++..+. ....++|+.|+|.+.+.|++|+.|+.|+.||+| .++.++.+..|.+.|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR----s~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR----SGKVVQEYDRHLGAI 345 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc----chHHHHHHHhhhhhe
Confidence 999999999999999999999988874 456789999997666999999999999999999 888999999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEE
Q 011216 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
..+.|-++|+.+++.+.|++++||+.+....... +.....|+
T Consensus 346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~-------------------------------i~~~~~hs------- 387 (503)
T KOG0282|consen 346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIKN-------------------------------IADPEMHT------- 387 (503)
T ss_pred eeeEEccCCceEeeeccCccEEEEEcCCCccchh-------------------------------hcchhhcc-------
Confidence 9999999999999999999999999987332111 11111111
Q ss_pred EEecCcccCCCcEEEEEecCCeEEEEECCCc---cEEEEecCCC--CCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
..++...|+++++++-+.|+.|.++.+... .....+++|. +--..+.|||||.+|++|+.||.+.+||..+-..
T Consensus 388 -mP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 388 -MPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred -CcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 122356779999999999999999997543 2334566775 4567789999999999999999999999987654
Q ss_pred C
Q 011216 475 A 475 (491)
Q Consensus 475 ~ 475 (491)
.
T Consensus 467 ~ 467 (503)
T KOG0282|consen 467 V 467 (503)
T ss_pred h
Confidence 3
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.4e-31 Score=219.22 Aligned_cols=255 Identities=19% Similarity=0.257 Sum_probs=212.7
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
..+.|..|+|||++|++|+.||-|.+||..+|+...-.+..... ...-+..+|.|+.|+.|..+|++|+.||
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------NFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------ceeecccceEEEeecccHHHhhccCcCC
Confidence 35788999999999999999999999999999876544432211 1123556899999999999999999999
Q ss_pred eEEEEECCCCeeeEEEe-ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC
Q 011216 250 CIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~ 328 (491)
.|++|.+.+|.+++++. .|...|+|+.|+ .++..+++++.|.++++.-+. .++.+..+.+|...|+...|.+||
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~dG 360 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDDG 360 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCCC
Confidence 99999999999999987 899999999998 888899999999999999998 999999999999999999999999
Q ss_pred CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC
Q 011216 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
.++++++.||+|++|+..+..+ +.+|+......++.....-|.
T Consensus 361 ~~iisaSsDgtvkvW~~KtteC----------------------------------~~Tfk~~~~d~~vnsv~~~PK--- 403 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTTEC----------------------------------LSTFKPLGTDYPVNSVILLPK--- 403 (508)
T ss_pred CeEEEecCCccEEEecCcchhh----------------------------------hhhccCCCCcccceeEEEcCC---
Confidence 9999999999999999988543 334443333333333333333
Q ss_pred CCcEEEEEecCCeEEEEECCCccEEEEecC---CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
+...++++...++|+|.++ .|+.+..+.. ..+...+++.+|.|.++...+.|+.++.+.+.++...
T Consensus 404 npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 5667888888999999998 6788887752 3456778899999999999999999999999887643
No 78
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-29 Score=207.07 Aligned_cols=250 Identities=20% Similarity=0.252 Sum_probs=202.0
Q ss_pred CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
..+.|+++.|+++|.+|++++.|.+++|||..+++........+ ..+..++|......++.++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skk----------------yG~~~~~Fth~~~~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKK----------------YGVDLACFTHHSNTVIHSST 76 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccc----------------ccccEEEEecCCceEEEccC
Confidence 34479999999999999999999999999999998776655332 26778888877777777776
Q ss_pred --CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 248 --DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 248 --dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
|.+|+..++.+++.++.+.+|...|++++.+ |.+..+++++.|++|++||+| ..++...+..... ..++|.
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR----~~~cqg~l~~~~~--pi~AfD 149 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR----VKKCQGLLNLSGR--PIAAFD 149 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEec----CCCCceEEecCCC--cceeEC
Confidence 8899999999999999999999999999999 556899999999999999998 5555555443333 357899
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
|+|-++|++...+.|++||++.... .+..++.-... ...-...+.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dk--------------------------------gPF~tf~i~~~---~~~ew~~l~ 194 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDK--------------------------------GPFTTFSITDN---DEAEWTDLE 194 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCC--------------------------------CCceeEccCCC---CccceeeeE
Confidence 9999999998888999999998643 23333332210 011122346
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCe---eeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
|||||++|+.++..+.+++.|.-+|..+..+..+...- .+.+|+||++++++|+.||+|++|++.++.+.
T Consensus 195 FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 195 FSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred EcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 88899999999999999999999999999888765432 57899999999999999999999999887654
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-30 Score=207.62 Aligned_cols=246 Identities=18% Similarity=0.256 Sum_probs=200.6
Q ss_pred CCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEEECCC
Q 011216 123 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 123 h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iwd~~~ 200 (491)
-.+.++.++|+++. +.+++++.||++++||+... -..+...+.|...|.++.|++. ++.+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 36889999999975 57889999999999996543 2344566788889999999984 56778889999999999877
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEec
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (491)
++.+..+ .||...|+..+|+| .++.+++++.|+.+++||++.......+..|...|.|+.|+.
T Consensus 137 ~~Sv~Tf----------------~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 137 PNSVQTF----------------NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK 200 (311)
T ss_pred CcceEee----------------cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence 6654443 26888999999999 678999999999999999987655556889999999999998
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccccCc
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
-+.++++||+.|+.|++||++.. ..++..+.+|.-.|..+.|||. ...|++++.|-+++|||.....
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~---r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------- 268 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNL---RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------- 268 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhc---cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch---------
Confidence 88899999999999999999843 4678888999999999999996 4678999999999999988633
Q ss_pred ccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
..+.+++.|+.. +....|++. ++.++|..+.|+.++||+.
T Consensus 269 ------------------------s~~e~~~~HtEF--v~g~Dws~~---~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 269 ------------------------SAIETVDHHTEF--VCGLDWSLF---DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ------------------------hhhhhhhccceE--Eeccccccc---cCceeeecccccceeeecc
Confidence 344445555522 223334433 5789999999999999984
No 80
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.5e-28 Score=233.56 Aligned_cols=257 Identities=19% Similarity=0.245 Sum_probs=193.4
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCC
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg 249 (491)
.|.....++++..+++++.+.....|+...+... ........ .........+|.+.|.+++|+| ++++|++|+.|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v--~~~~~~G~-~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV--LKHTDYGK-LASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEE--eecccccc-CCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4666667788777888888888888987655321 11111000 0011122457999999999999 888999999999
Q ss_pred eEEEEECCCC-------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 250 CIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 250 ~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
+|++||+.++ ..+..+.+|...|.+++|+|..+++|++++.|++|+|||+. .+..+..+.+|...|.++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~----tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSL 174 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC----CCeEEEEEcCCCCceEEE
Confidence 9999999765 34567889999999999996556899999999999999998 677788888999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
+|+|+|.+|++++.|+.|++||+++. ..+..+.+|..... ..+.
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg----------------------------------~~v~tl~~H~~~~~-~~~~- 218 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDG----------------------------------TIVSSVEAHASAKS-QRCL- 218 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCC----------------------------------cEEEEEecCCCCcc-eEEE-
Confidence 99999999999999999999999873 44555666643211 1233
Q ss_pred cCcccCCCcEEEEEe----cCCeEEEEECCCcc-EEEEecCC-CCCeeeeEecCCCCeEEEEE-CCCcEEEecCCCCC
Q 011216 403 SPVYSTGQKYIYTGS----HDSCVYVYDLVSGE-QVAALKYH-TSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 473 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~----~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~~~~~ 473 (491)
|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++.+|++++ .||.|++||+..+.
T Consensus 219 ---w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 219 ---WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred ---EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 334566666543 47899999998754 44444333 34566678999999999887 59999999998765
No 81
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=218.09 Aligned_cols=273 Identities=18% Similarity=0.275 Sum_probs=219.2
Q ss_pred CCCCcccc---cccceecccccCCCC---CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccC
Q 011216 94 SGRGRFSA---ADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (491)
Q Consensus 94 ~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (491)
++.|++-+ .++..+.....+... ...+.+|..+|.-+.||||.++|++|+.+..+.+||+.+|...... .++
T Consensus 233 S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y--~~~ 310 (519)
T KOG0293|consen 233 SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLY--PSG 310 (519)
T ss_pred cCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhc--ccC
Confidence 55665433 355566666666554 5678899999999999999999999999999999999999655543 234
Q ss_pred CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
+...+.+++|.|||..+++|+.|+++..||++............ -.|.+++.++||+++++.+.
T Consensus 311 ~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~----------------~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRD----------------PKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccccc----------------ceeEEEEEcCCCcEEEEEec
Confidence 66789999999999999999999999999998655322221111 16999999999999999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc--EEEEEEc
Q 011216 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSR 325 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~i~~s 325 (491)
|..|++++.++......+ ....+|++++.+ .+++++++--.+..+++||+. ....+..+.||... +-.-+|-
T Consensus 375 d~~i~l~~~e~~~dr~li-se~~~its~~iS-~d~k~~LvnL~~qei~LWDl~----e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLI-SEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLE----ENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred ccceeeechhhhhhhccc-cccCceeEEEEc-CCCcEEEEEcccCeeEEeecc----hhhHHHHhhcccccceEEEeccC
Confidence 999999999887664433 455789999998 899999999999999999998 77888888888765 2233453
Q ss_pred C-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecC
Q 011216 326 G-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 326 p-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
. +..++++|+.|+.|+||+..+ +.++..+.||. .++..+.|+|
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~s----------------------------------gkll~~LsGHs--~~vNcVswNP 492 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRIS----------------------------------GKLLAVLSGHS--KTVNCVSWNP 492 (519)
T ss_pred CCCcceEEecCCCceEEEEEccC----------------------------------CceeEeecCCc--ceeeEEecCC
Confidence 3 558999999999999999988 57899999998 4455555666
Q ss_pred cccCCCcEEEEEecCCeEEEEECCC
Q 011216 405 VYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 405 ~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
+ +...+|+|+.||+|+||-...
T Consensus 493 ~---~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 493 A---DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred C---CHHHhhccCCCCeEEEecCCc
Confidence 6 678899999999999998653
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.4e-29 Score=218.72 Aligned_cols=263 Identities=23% Similarity=0.372 Sum_probs=215.9
Q ss_pred cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccccc-ceec--cccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTE--IHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
..|.-++.+++++|++++.++++.+++|.=|++.+++..... .... ...+..+.... .+|...+.+++.++||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCCCcEE
Confidence 456668999999999999999999999999999998865222 2111 11122222332 4799999999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
++|+.|..|.||+.++.+.+..+.+|.+.|.+++|- ...+.+++++.|+.|++|++. ....+..+.+|.+.|..|
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~----~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSID----QLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EecCCCceEEEecCcccchhhcccccccceeeeeee-cCccceeeeecCCceEEEehh----HhHHHHHHhCCccceeee
Confidence 999999999999999999999999999999999996 777889999999999999998 777888999999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
....-++.+-+|+.|.++++|++.. ..-..+.++.....+..++
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~e-----------------------------------esqlifrg~~~sidcv~~I- 336 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPE-----------------------------------ESQLIFRGGEGSIDCVAFI- 336 (479)
T ss_pred chhcccceEEeccccceeEEEeccc-----------------------------------cceeeeeCCCCCeeeEEEe-
Confidence 9988888888899999999999954 3344455554222222221
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCccEEEEec-CC-----------CCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YH-----------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h-----------~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+...+++|+.+|.|.+|++...+++.+.+ +| ...|++++..|...++++|+.+|.|++|.+.
T Consensus 337 ------n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 337 ------NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred ------cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEec
Confidence 56789999999999999999999887764 22 1278999999999999999999999999999
Q ss_pred CCCCCC
Q 011216 471 GNGEAA 476 (491)
Q Consensus 471 ~~~~~~ 476 (491)
.+-...
T Consensus 411 ~g~r~i 416 (479)
T KOG0299|consen 411 DGLRAI 416 (479)
T ss_pred CCcccc
Confidence 885543
No 83
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.3e-27 Score=227.89 Aligned_cols=257 Identities=18% Similarity=0.245 Sum_probs=189.2
Q ss_pred EECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEEECCCCccccccceecccccccccc
Q 011216 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 142 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
|+.++.|++|+...... .....+|...|.+++|+|+ +.+|++|+.|++|+|||+.++..... .... ..
T Consensus 50 GG~~gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~-------p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKD-------PQ 118 (568)
T ss_pred CCceeEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-cccc-------ce
Confidence 56688999999876532 3345688889999999997 78999999999999999976432100 0000 00
Q ss_pred CCCCCceecEEEEEEcCCCCE-EEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 011216 221 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 221 ~~~~~h~~~v~~i~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 299 (491)
....+|...|.+++|+|++.. |++++.|+.|++||+.+++....+. |...|.+++|+ +++.+|++++.|+.|+|||+
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence 012357789999999998875 4688999999999999998776664 66789999998 78999999999999999999
Q ss_pred ccccCCCcceeeeccccccEEE-----EEEcCCCCEEEEeeCCC----cEEEeeCCCCCCccccccCcccceeeceeecC
Q 011216 300 RCLNVKGKPAGVLMGHLEGITF-----IDSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~-----i~~sp~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
+ .+..+..+.+|.+.+.. ..|++++.+|++++.|+ .|+|||++...
T Consensus 197 R----sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------------------- 251 (568)
T PTZ00420 197 R----KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------------------- 251 (568)
T ss_pred C----CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---------------------
Confidence 8 77778888889876543 23568999999988774 79999998632
Q ss_pred CCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec--CCCCCeeeeEe
Q 011216 371 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSW 448 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~ 448 (491)
.++..+..+.....+.. .+. .+++.++++|+.|+.|++|++..+.. ..+. .+..++.+++|
T Consensus 252 ------------~pl~~~~ld~~~~~L~p-~~D---~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f 314 (568)
T PTZ00420 252 ------------SALVTMSIDNASAPLIP-HYD---ESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGF 314 (568)
T ss_pred ------------CceEEEEecCCccceEE-eee---CCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEE
Confidence 23333322221111111 111 33688999999999999999977642 2232 25678899999
Q ss_pred cCCCC
Q 011216 449 HPSQP 453 (491)
Q Consensus 449 s~~~~ 453 (491)
.|+..
T Consensus 315 ~Pkr~ 319 (568)
T PTZ00420 315 LPKQI 319 (568)
T ss_pred ccccc
Confidence 99753
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.3e-28 Score=223.85 Aligned_cols=284 Identities=17% Similarity=0.269 Sum_probs=232.5
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEE-eEeCC-CCceEEEEecCCeEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-l~~sp-~~~~l~~~~~dg~i~ 194 (491)
...+.+|...|..+++.+.. .+++++.||++++|+-..+..+.. ....++.+-|.. +++.+ ++-.|++|+.|..|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCcceEeecccceEE
Confidence 35678999999999987654 799999999999999866544332 233445555655 88875 445699999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
+|...+.......+ ||...|.++....++. +++|+.|.++++|-.. ++...+.+|+..|.+
T Consensus 85 v~~~~~~~P~~~Lk----------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLK----------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWA 145 (745)
T ss_pred EEecCCCCchhhhh----------------ccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheee
Confidence 99998877655443 7889999999888887 9999999999999764 445568899999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+... +++ .++||+.|.+|++|. .++.+..+.+|.+.|+.+++-+++ .|++++.||.|++|++..
T Consensus 146 v~~l-~e~-~~vTgsaDKtIklWk------~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------- 209 (745)
T KOG0301|consen 146 VASL-PEN-TYVTGSADKTIKLWK------GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------- 209 (745)
T ss_pred eeec-CCC-cEEeccCcceeeecc------CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC-------
Confidence 9987 444 889999999999998 578899999999999999999765 588999999999999964
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
..+..+.+|+... ++.....++..++++++|++++||+.. ++.+
T Consensus 210 ----------------------------e~l~~~~ghtn~v------Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 210 ----------------------------EVLLEMHGHTNFV------YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred ----------------------------ceeeeeeccceEE------EEEEecCCCCeEEEecCCceEEEeecC--ceEE
Confidence 7888999998544 444455678899999999999999965 7788
Q ss_pred EecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+....-.|+++.+-++|. |++|+.||.|+||.......
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 8875556899999998886 77888999999999875543
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.7e-28 Score=200.21 Aligned_cols=269 Identities=18% Similarity=0.270 Sum_probs=208.9
Q ss_pred EEEEECCCeEEEEECCCC---------eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccce
Q 011216 139 FVAGFQASQIRIYDVERG---------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 139 l~~~~~dg~i~vw~~~~~---------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (491)
+++|+....|.=+++... ..+........|.++|++++. ++.++++|+.|-+|+|||+.........-
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll- 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL- 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee-
Confidence 566776666666655422 123335566789999999998 68999999999999999998765433322
Q ss_pred eccccccccccCCCCCceecEEEEEEcCCCC--EEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEE
Q 011216 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 287 (491)
.|.+.|+++.|.+.-. .|++|+.||.|.+|+....+++..+++|.+.|+.++.+ |.+++.++
T Consensus 81 ---------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH-PS~KLALs 144 (362)
T KOG0294|consen 81 ---------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH-PSGKLALS 144 (362)
T ss_pred ---------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec-CCCceEEE
Confidence 3677999999998764 89999999999999999999999999999999999998 88999999
Q ss_pred EeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeecee
Q 011216 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 288 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
.+.|+.+++||+- .++.-..+.- ...-+.+.|+|.|.+++.++.++ |-+|.+.+......
T Consensus 145 Vg~D~~lr~WNLV----~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~-------------- 204 (362)
T KOG0294|consen 145 VGGDQVLRTWNLV----RGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE-------------- 204 (362)
T ss_pred EcCCceeeeehhh----cCccceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh--------------
Confidence 9999999999996 4444333321 22334599999999999888765 89998876321111
Q ss_pred ecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeE
Q 011216 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 447 (491)
.... .......| -++..|++|..|+.|.+||..+..+...+.+|...|.++.
T Consensus 205 --------------------i~~~---~r~l~~~~-----l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~ 256 (362)
T KOG0294|consen 205 --------------------IENP---KRILCATF-----LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIA 256 (362)
T ss_pred --------------------hhcc---ccceeeee-----cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeE
Confidence 1100 01111111 1678999999999999999999999999999999999998
Q ss_pred e--cCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 448 W--HPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 448 ~--s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+ .|++.+|+|+|.||.|+|||++....
T Consensus 257 ~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 257 SYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred EEecCCceEEEEeccCceEEEEEcccccc
Confidence 4 46778999999999999999988743
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=228.65 Aligned_cols=285 Identities=19% Similarity=0.309 Sum_probs=228.1
Q ss_pred EEEEc-CCCCEEEEEECCCeEEEEECCCCeEE--EE-EeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc
Q 011216 129 VSQFS-ADGSLFVAGFQASQIRIYDVERGWKI--QK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 129 ~~~~s-~dg~~l~~~~~dg~i~vw~~~~~~~~--~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (491)
.+..+ |.++||.+||.||.|++|++...... .. ......|...|++++..-+++.|++++.|-+|++|+...+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 35678999999999999998754221 11 3345678889999999999999999999999999998766411
Q ss_pred cccceeccccccccccCCCCCceecEEEEEE-cCCCCEEEEEecCCeEEEEECCCCee--e--------EEEe-ccCCCe
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGRELVAGSSDDCIYVYDLEANKL--S--------LRIL-AHTSDV 272 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s~~~~~l~~~~~dg~i~vwd~~~~~~--~--------~~~~-~~~~~v 272 (491)
. ....+.|+..|.|+++ -++...+|+|+-|+.|.+||+.++.. + ..+. ++...|
T Consensus 109 c--------------~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 109 C--------------MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred h--------------HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 1 1122358889999999 77888999999999999999997722 2 2223 788899
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
.+++.+ +.+..|++|+..+.+++||.+ ..+.+..+.+|++.|..+..++||..+++++.||+|++||+..
T Consensus 175 YSLA~N-~t~t~ivsGgtek~lr~wDpr----t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq----- 244 (735)
T KOG0308|consen 175 YSLAMN-QTGTIIVSGGTEKDLRLWDPR----TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ----- 244 (735)
T ss_pred eeeecC-CcceEEEecCcccceEEeccc----cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-----
Confidence 999998 778899999999999999999 8888999999999999999999999999999999999999987
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
.+++.++..|... +|+...+|+-..+++|+.||.|+.=|+++...
T Consensus 245 -----------------------------QrCl~T~~vH~e~------VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 245 -----------------------------QRCLATYIVHKEG------VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred -----------------------------cceeeeEEeccCc------eEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence 4677777777733 45555567788999999999999999988543
Q ss_pred EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
...+-....+|..+..+...+-+-+++.|+.|+-|.....
T Consensus 290 ~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 290 STLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred heEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 3333335667888888766665677788999999987653
No 87
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.1e-27 Score=196.55 Aligned_cols=279 Identities=15% Similarity=0.160 Sum_probs=216.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
.+.|..+.|+|.++.|++++.||++++|++.... ....-.|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 6889999999999999999999999999998762 222234566999999987 45688999999999999998876
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
..+. .|..+|.|+.+++-...+++|+.|++|++||.+.......+. ....|.++..+ ++
T Consensus 88 ~~ig-----------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~ 146 (323)
T KOG1036|consen 88 DQIG-----------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GN 146 (323)
T ss_pred eeec-----------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc---CC
Confidence 5443 366699999999977789999999999999998755555553 34488888875 77
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccccee
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.|+.|+.|..+.+||+|...... ...-..-.-.+.+|++-|++.-+++++-||.|.+=.+.......
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~----------- 213 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ----------- 213 (323)
T ss_pred EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh-----------
Confidence 89999999999999998443221 11112234568899999998889999999998887666532111
Q ss_pred eceeecCCCCcccccCCCCCeeEEEccccee---eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVL---RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
..-..|+.|... ..+.-.+.+++|+|--..+|+|+.||.|.+||+.+.+.+..+....
T Consensus 214 -------------------skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 214 -------------------SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred -------------------hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC
Confidence 122234444321 2233344556777778899999999999999999999999998777
Q ss_pred CCeeeeEecCCCCeEEEEEC
Q 011216 441 SPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 441 ~~v~~~~~s~~~~~l~s~~~ 460 (491)
..|.+++|+.||..||+++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 88999999999999999864
No 88
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=8.6e-29 Score=216.23 Aligned_cols=270 Identities=20% Similarity=0.318 Sum_probs=210.7
Q ss_pred cCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEE-------EeeccCCceeEEEeEeCCCC-ceEEEEecCC
Q 011216 121 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~-------~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg 191 (491)
..|.+.|+.+..-|... .+|+++..+.|.|||..+...... .+...+|...-++++|++.. -.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46899999999999765 566778899999999876422222 12445666667789999965 5889999999
Q ss_pred eEEEEECCCCcccc-ccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECC--CCeeeEEEec
Q 011216 192 IVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRILA 267 (491)
Q Consensus 192 ~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~ 267 (491)
+|++||+....... ..... ....+|...|..++|++ +...|++++.|+.+.|||++ +.++.....+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~----------~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPK----------TIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred cEEEEeccccccCCccccce----------EEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 99999997654421 11111 12236888999999999 55688899999999999999 5666677789
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCC
Q 011216 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~ 346 (491)
|.+.|+|++|+|.++.+||+|+.|++|++||+|.. ..++..+.+|...|..|.|+|+ ...|++++.|+.+.+||+.
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 99999999999999999999999999999999944 3478899999999999999996 5678899999999999997
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
....... +. + ..||
T Consensus 348 ~ig~eq~--------------------------------------------------~e---d-------a~dg------ 361 (422)
T KOG0264|consen 348 RIGEEQS--------------------------------------------------PE---D-------AEDG------ 361 (422)
T ss_pred ccccccC--------------------------------------------------hh---h-------hccC------
Confidence 6321100 00 0 0122
Q ss_pred CCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCC
Q 011216 427 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~ 471 (491)
..+++..-.||...|.+++|+|..+ .|+|++.|+.+.||++..
T Consensus 362 --ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 --PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred --CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2345556668999999999999988 677889999999999984
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-28 Score=217.82 Aligned_cols=285 Identities=18% Similarity=0.242 Sum_probs=230.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
-.|..-|.++++|...+++.||+. |.|+|||+.... .+..+.. ..-...|.++.+.|||+.|++|++-.++.|||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc-l~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC-LNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccc-cCcccceeeeEecCCCceEEeccccceeeeee
Confidence 368889999999999999999975 579999997531 1222211 12234689999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
+......-...+.... -..++++.+||.+..+++..||.|.|||+.+...++.+.+|.+.+.||.+
T Consensus 494 LAapTprikaeltssa--------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSA--------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred ccCCCcchhhhcCCcc--------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 9876543222222111 15778999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+ ++|..|-+|+-|++|+.||++ .+..+... .....|.++..+|++.++++|-.++.+.|.......
T Consensus 560 s-~dGtklWTGGlDntvRcWDlr----egrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-------- 625 (705)
T KOG0639|consen 560 S-KDGTKLWTGGLDNTVRCWDLR----EGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-------- 625 (705)
T ss_pred c-CCCceeecCCCccceeehhhh----hhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCcc--------
Confidence 8 899999999999999999998 55544332 245789999999999999999999988887766521
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 437 (491)
-..+..|. .|+.+..|++.|+++++.+.|..+..|.+.-|..+...+
T Consensus 626 ---------------------------kyqlhlhe------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 626 ---------------------------KYQLHLHE------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred ---------------------------ceeecccc------cEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 22222333 455566677789999999999999999999998888876
Q ss_pred CCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 ~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
..++|.++.+|.|.++|+||+.|....||.+
T Consensus 673 -E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 -ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 5678999999999999999999998888875
No 90
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.2e-27 Score=226.51 Aligned_cols=230 Identities=13% Similarity=0.181 Sum_probs=173.0
Q ss_pred EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCe-----
Q 011216 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK----- 260 (491)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~----- 260 (491)
|+.++.|++|+......... ..+|...|.+++|+|+ +.+|++|+.|+.|++||+.++.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~----------------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIK----------------LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred CCceeEEEeeecCCCceEEE----------------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 44567788888654322111 1268889999999996 7899999999999999997642
Q ss_pred ---eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC
Q 011216 261 ---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 261 ---~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d 337 (491)
++..+.+|...|.+++|+|....+|++++.|++|++||++ .+.....+. |...|.+++|+|+|.+|++++.|
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~----tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE----NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC----CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC
Confidence 3345778999999999995444567899999999999998 555555554 56789999999999999999999
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
+.|+|||+++ +..+..+.+|...... ...+...|++++.+|++++
T Consensus 189 ~~IrIwD~Rs----------------------------------g~~i~tl~gH~g~~~s-~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 189 KHMHIIDPRK----------------------------------QEIASSFHIHDGGKNT-KNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred CEEEEEECCC----------------------------------CcEEEEEecccCCcee-EEEEeeeEcCCCCEEEEEE
Confidence 9999999998 3456667777643222 2233335667889999988
Q ss_pred cCC----eEEEEECCC-ccEEEEec--CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 418 HDS----CVYVYDLVS-GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 418 ~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.|+ .|+|||+++ ++++..+. .+.+.+......+++.++++|+.|+.|++|++..+
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 764 799999985 56665543 33344444444566889999999999999999765
No 91
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.5e-28 Score=207.40 Aligned_cols=271 Identities=19% Similarity=0.277 Sum_probs=209.0
Q ss_pred CCCCCccccCCCCceEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEE-EeeccCCceeEEEeEeCCCCceEEEEe
Q 011216 113 PVNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~dg---~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~ 188 (491)
..+....+.+|.++|..++|--.. ..|++++.|.++++|..+.+..... .....+|...|.++...++|..+++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 344456788999999988874333 3699999999999999987643322 233458999999999999999999999
Q ss_pred cCCeEEEEECCCCcccccccee---------ccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 189 MSPIVHIVDVGSGTMESLANVT---------EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.|..|.||+............. ....+...+.....||+.+|.++.|++ ...+++++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 9999999994332211111111 111112223334569999999999998 567999999999999999999
Q ss_pred eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-CEEEEeeCCC
Q 011216 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQ 338 (491)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~~~~~dg 338 (491)
....++.+ ...++|+.++ +..++|++|+.|..+++||.|... .......+.+|...|.++.|+|.. ..|++++.|+
T Consensus 292 ~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~-gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 292 GLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGD-GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCCC-CceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 98877754 5678999998 688999999999999999999663 345567889999999999999964 5688999999
Q ss_pred cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec
Q 011216 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 418 (491)
++++||+|+.. .++..+.+|. ..+... .|. ++.+|++|+.
T Consensus 369 t~klWDvRS~k---------------------------------~plydI~~h~--DKvl~v----dW~-~~~~IvSGGa 408 (423)
T KOG0313|consen 369 TVKLWDVRSTK---------------------------------APLYDIAGHN--DKVLSV----DWN-EGGLIVSGGA 408 (423)
T ss_pred eEEEEEeccCC---------------------------------CcceeeccCC--ceEEEE----ecc-CCceEEeccC
Confidence 99999999843 3666777775 233333 333 5789999999
Q ss_pred CCeEEEEEC
Q 011216 419 DSCVYVYDL 427 (491)
Q Consensus 419 dg~i~iwd~ 427 (491)
|.+|+|+..
T Consensus 409 D~~l~i~~~ 417 (423)
T KOG0313|consen 409 DNKLRIFKG 417 (423)
T ss_pred cceEEEecc
Confidence 999999874
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.5e-29 Score=198.92 Aligned_cols=256 Identities=17% Similarity=0.145 Sum_probs=205.1
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC--CCceEEEEecCCeEEEEE
Q 011216 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~dg~i~iwd 197 (491)
-.+|.+.|..+...-.|++|||++.|++|+|+.+.++.....+..+.+|.++|..++|.. .|.+|+++++||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 367999999999999999999999999999999988766666778899999999999976 789999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEEecCCeEEEEECCCC-e--eeEEEeccCCCe
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-K--LSLRILAHTSDV 272 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~-~--~~~~~~~~~~~v 272 (491)
-.+++....... ..|...|++++|-|. |-.|++++.||.|.|.+.+.. . .......|.-.|
T Consensus 87 e~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 87 EENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred cCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 988865433322 247889999999984 568999999999999998765 2 223445899999
Q ss_pred EEEEEecCC--C-----------CEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC----CEEEEee
Q 011216 273 NTVCFGDES--G-----------HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYLISNG 335 (491)
Q Consensus 273 ~~i~~~~~~--~-----------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l~~~~ 335 (491)
++++|.|.. + ..|++|+.|..|+||+.... .......+.+|.+-|+.++|.|.- .+|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 999998642 2 56999999999999998632 334555689999999999999963 5799999
Q ss_pred CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.||++.||..+........ ..+ .......++..||+.|++|++
T Consensus 231 qDg~viIwt~~~e~e~wk~----------------------------tll---------~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKK----------------------------TLL---------EEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred CCCcEEEEEecCccCcccc----------------------------ccc---------ccCCcceEEEEEeccccEEEE
Confidence 9999999988742221111 111 123345677788889999999
Q ss_pred EecCCeEEEEECC
Q 011216 416 GSHDSCVYVYDLV 428 (491)
Q Consensus 416 g~~dg~i~iwd~~ 428 (491)
++.|+.|.+|.-.
T Consensus 274 s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 274 SGGDNKVTLWKEN 286 (299)
T ss_pred ecCCcEEEEEEeC
Confidence 9999999999753
No 93
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=7.4e-28 Score=210.24 Aligned_cols=306 Identities=18% Similarity=0.247 Sum_probs=234.2
Q ss_pred ccccCCCCceEEEEEcCCCC--EEEEEECCCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeCCCC-ceEEEEecCCeE
Q 011216 118 WPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIV 193 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~--~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i 193 (491)
....-+..+|++++|+|..+ ++|+|...|.|-+||+.+ +...........|..+|.+|.|+|.+ ..+++.++||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 44567899999999999764 788899999999999953 22334455667888899999999965 688899999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee-eEEEeccCCCe
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDV 272 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v 272 (491)
++-|++.+....+...... ...+.++.|+.+...++++..-|...+||++++.. ...+.-|...|
T Consensus 260 R~~D~~~~i~e~v~s~~~d--------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTD--------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred eeeeecchhhHHHhhcCcc--------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 9999998877666554321 12577889998888899998888999999988765 55566788899
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
++++++|....+|++++.|++.+|||+|.......++.....|...|.+..|||.+-.|++.+.|..|+|||..-....
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~- 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK- 404 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-
Confidence 9999999999999999999999999999776554455666789999999999999888999999999999998521110
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEE-cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
..+..++ ..+...+. -..|...|.|+..++++|..-..|-|+|-..++
T Consensus 405 -----------------------------~~p~~~I~Hn~~t~Rw--lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 405 -----------------------------DEPLGTIPHNNRTGRW--LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred -----------------------------CCccceeeccCccccc--ccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 0111111 11111111 123445677899999999999999999998888
Q ss_pred EEEEecCCC-CCeee-eEecCCCCeEEEE-ECCCcEEEecC
Q 011216 432 QVAALKYHT-SPVRD-CSWHPSQPMLVSS-SWDGDVVRWEF 469 (491)
Q Consensus 432 ~~~~~~~h~-~~v~~-~~~s~~~~~l~s~-~~Dg~i~iw~~ 469 (491)
.+..+.... ..|.+ ..|+|-+..+++| +..|.|+||--
T Consensus 454 ~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 454 MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 888765333 24554 4899998855555 56788888854
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=208.05 Aligned_cols=293 Identities=12% Similarity=0.169 Sum_probs=228.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEeeccCCceeEEEeEeCCCCc-eEEEEecCCeEEEEEC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV 198 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~dg~i~iwd~ 198 (491)
...+.|+++.|+|...+|++|+.|++++||.++.. ..++... -...+|.+.+|.|+|. .+++++....++.||+
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~---l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH---LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee---eccCccceeeecCCCceEEEecccceEEEEeec
Confidence 34688999999999999999999999999998753 2233222 2334899999999998 8889999999999999
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEe
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (491)
.+.+...+..+..... ..+.....++++++|+..+..|.|.+....+++.+..+ .-.+.|..++|+
T Consensus 288 e~ak~~k~~~~~g~e~-------------~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~-KieG~v~~~~fs 353 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVEE-------------KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF-KIEGVVSDFTFS 353 (514)
T ss_pred cccccccccCCCCccc-------------chhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-eeccEEeeEEEe
Confidence 9888766554432221 15667888999999999999999999999999988887 456889999998
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc-cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
.++..|++++.+|.|.+||++ ...++..+..... .-++++.++++.+||+|+..|.|.|||..+-.....
T Consensus 354 -Sdsk~l~~~~~~GeV~v~nl~----~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~---- 424 (514)
T KOG2055|consen 354 -SDSKELLASGGTGEVYVWNLR----QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN---- 424 (514)
T ss_pred -cCCcEEEEEcCCceEEEEecC----CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC----
Confidence 788999999999999999998 6677776654322 236788889999999999999999999765211100
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec--CCeEEEEECCCccEEEE
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~~~~~~ 435 (491)
.+++..+.. +...+.++.|++|..+||.++. +..+++-.+.+......
T Consensus 425 ------------------------PkPik~~dN------Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 425 ------------------------PKPIKTVDN------LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred ------------------------CCchhhhhh------hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeecc
Confidence 133333322 2233455678889999998876 56899999887776665
Q ss_pred ecC---CCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 436 LKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 436 ~~~---h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+.. .-+.|+|++|+|.+.+||.|..+|.|.+|.+.
T Consensus 475 fP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 475 FPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 543 33579999999999999999999999999874
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.1e-27 Score=223.27 Aligned_cols=256 Identities=24% Similarity=0.290 Sum_probs=210.9
Q ss_pred cCCCCCcc-ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC
Q 011216 112 LPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (491)
Q Consensus 112 ~~~~~~~~-~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d 190 (491)
.+...... +.+|.+.|.+++|..-+.+|++|+.|.+++|||..+|.+.... .+|...|.++... ...+++|+.|
T Consensus 236 ~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l---~gh~stv~~~~~~--~~~~~sgs~D 310 (537)
T KOG0274|consen 236 NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL---QGHTSSVRCLTID--PFLLVSGSRD 310 (537)
T ss_pred ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe---cCCCceEEEEEcc--CceEeeccCC
Confidence 33333344 7899999999999887889999999999999999999776654 5788888888774 4567888999
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
.+|++|++.++....+.. +|.++|.++..+ +.++++|+.|+.|.+||+.+++++..+.+|..
T Consensus 311 ~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~ 372 (537)
T KOG0274|consen 311 NTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG 372 (537)
T ss_pred ceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcc
Confidence 999999999888766554 477899999998 77999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC-cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
.|.++.+. .. ..+++|+.|++|++||++ .. +++..+.+|..-+..+.+ .+++|++++.|++|++||..+
T Consensus 373 ~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~----~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~-- 442 (537)
T KOG0274|consen 373 RVYSLIVD-SE-NRLLSGSLDTTIKVWDLR----TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE-- 442 (537)
T ss_pred eEEEEEec-Cc-ceEEeeeeccceEeecCC----chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeeccc--
Confidence 99999885 32 889999999999999998 66 789999999998877665 467999999999999999988
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc-ceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
++.+.++.++ ....... .+ ....+++++.||.+++||++
T Consensus 443 --------------------------------~~~~~~~~~~~~~~v~~l------~~--~~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 443 --------------------------------GECLRTLEGRHVGGVSAL------AL--GKEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred --------------------------------CceeeeeccCCcccEEEe------ec--CcceEEEEecCCeeEEEecc
Confidence 4566666663 2111111 11 13678999999999999999
Q ss_pred CccEEEEecCCC
Q 011216 429 SGEQVAALKYHT 440 (491)
Q Consensus 429 ~~~~~~~~~~h~ 440 (491)
+++.+..+-.+.
T Consensus 483 ~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 483 SGTLIRTLLSTD 494 (537)
T ss_pred cCchhhhhhhcc
Confidence 999887663333
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.3e-27 Score=228.49 Aligned_cols=265 Identities=18% Similarity=0.207 Sum_probs=208.3
Q ss_pred cCCceeEEEeEeCCCCceEEEEe--cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 166 KSLRWTVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
.++...|.++..+||+..+++|+ .|+.+.||+.+.--.... .....+.........|.+.|.|+.|+|||++||
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~----~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE----EKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhh----hhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 44556799999999999999999 899999999753110000 000001111222346888999999999999999
Q ss_pred EEecCCeEEEEECCC------------------CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC
Q 011216 244 AGSSDDCIYVYDLEA------------------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 305 (491)
+|+.|+.|.||.... .+.+..+.+|.+.|..++|+ |++.+|++++.|++|.+|+.+ +
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsViiwn~~----t 160 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSVIIWNAK----T 160 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceEEEEccc----c
Confidence 999999999999872 13566788999999999998 689999999999999999998 7
Q ss_pred CcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCee
Q 011216 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.+.+..+.+|...|..+.|.|-|++|++-+.|++|++|++.+. +..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw----------------------------------~i~ 206 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW----------------------------------GIE 206 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccc----------------------------------eee
Confidence 7889999999999999999999999999999999999997662 223
Q ss_pred EEEcccceeeeeEEEEecCcccCCCcEEEEEec----CCeEEEEECCCccEEEEecCCCCCeeeeEecCC----------
Q 011216 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS---------- 451 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~---------- 451 (491)
+.+.++-...........+.|||||++|++... -..+.|.+-.+.+.-..|-+|.+++.++.|+|.
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 333333222223344566789999999998754 347889998888888888999999999999981
Q ss_pred ---CC----eEEEEECCCcEEEecCCCCC
Q 011216 452 ---QP----MLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 452 ---~~----~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.. .+|+|+.|++|.||.....+
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 11 68899999999999985544
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.4e-28 Score=223.11 Aligned_cols=295 Identities=19% Similarity=0.280 Sum_probs=224.1
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE----eeccCCceeEEEeEeCC-CCceEEEEecCCeEEEEEC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----ILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~iwd~ 198 (491)
+..+.++...++-..++.++.. .+.||.+......... .........+.++.|.. +.++|++++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 5566778888998888888754 6888887654211111 11112223566788875 4689999999999999999
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
............ ..|...+.++.|++ ...+|++|+.||+|++||++..+...++.+....|+.+.|
T Consensus 118 nk~~rnk~l~~f-------------~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f 184 (839)
T KOG0269|consen 118 NKSIRNKLLTVF-------------NEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF 184 (839)
T ss_pred CccccchhhhHh-------------hhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceee
Confidence 763211111111 13777999999998 4568999999999999999999988888899999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+|..++.|+++.+.|.+++||+| ....+...+.+|.++|.++.|+|++.+||+|+.|+.|+|||..+...
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~------- 254 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA------- 254 (839)
T ss_pred ccCCCceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------
Confidence 99999999999999999999999 35567788899999999999999999999999999999999986332
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec--CCeEEEEECCCc-cEEE
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--DSCVYVYDLVSG-EQVA 434 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iwd~~~~-~~~~ 434 (491)
..+.++.. ...+.++.|.|+. ...||+++. |-.|+|||++.. -+..
T Consensus 255 -------------------------~~~~tInT---iapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 255 -------------------------KPKHTINT---IAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIPYA 303 (839)
T ss_pred -------------------------cceeEEee---cceeeeeeeccCc---cchhhhhhccccceEEEEeeccccccce
Confidence 22222221 2234455677763 356777655 778999999764 3557
Q ss_pred EecCCCCCeeeeEecC-CCCeEEEEECCCcEEEecCCCCC
Q 011216 435 ALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~-~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
++..|...++.++|.. |-..|.+++.||+|..-.+.+..
T Consensus 304 t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 304 TFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 7889999999999976 34489999999998776665543
No 98
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.6e-28 Score=211.63 Aligned_cols=241 Identities=21% Similarity=0.332 Sum_probs=191.8
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
..|.+++|+|...+=++....-.+.||+..+......+.- ....++++.|..||++|++|+..|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr----------------Fk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR----------------FKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh----------------hccceeEEEeecCCeEEEccCCcC
Confidence 3799999999765433333456899999877665442221 222799999999999999999999
Q ss_pred eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-C
Q 011216 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-G 328 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~ 328 (491)
.|+|+|+.+...++.+.+|+.+|..+.|+|.++..|++|++|+.+++||+. .......+.+|++.|.+.+|+|- +
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s----~a~v~~~l~~htDYVR~g~~~~~~~ 166 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS----TAYVQAELSGHTDYVRCGDISPAND 166 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC----CcEEEEEecCCcceeEeeccccCCC
Confidence 999999888778888999999999999999999999999999999999997 54555588999999999999995 4
Q ss_pred CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC
Q 011216 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
..+++|+.||.|++||++... ..+..+....... .. .+-|
T Consensus 167 hivvtGsYDg~vrl~DtR~~~---------------------------------~~v~elnhg~pVe---~v----l~lp 206 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLT---------------------------------SRVVELNHGCPVE---SV----LALP 206 (487)
T ss_pred eEEEecCCCceEEEEEeccCC---------------------------------ceeEEecCCCcee---eE----EEcC
Confidence 578999999999999999842 2333343222222 22 2334
Q ss_pred CCcEEEEEecCCeEEEEECCCcc-EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
.|..+++++.+ .|++||+.+|. .+.....|...|+|+++..++..|++++-||.|++|++.+
T Consensus 207 sgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 207 SGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred CCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 68888888754 69999998654 4555556999999999999999999999999999999654
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.6e-27 Score=193.18 Aligned_cols=249 Identities=20% Similarity=0.278 Sum_probs=186.2
Q ss_pred cCCceeEEEeEeCCCC-ceEEEEecCCeEEEEECCCC-ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 166 KSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
......|.+|+|||.. .+++.++.|++|++|+++.. ...... ...|.++|.+++|+.||..++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka---------------~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA---------------QQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchh---------------hhccCCCeEEEEEccCCceEE
Confidence 3445589999999954 55668899999999999863 332211 113667999999999999999
Q ss_pred EEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCC-CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
+|+.|+.+++||+.+++. ..+..|.++|.++.|-+.. -..|++||.|.+|+.||.| ...++..+. ..+.++++
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R----~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR----SSNPVATLQ-LPERVYAA 162 (347)
T ss_pred eeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccC----CCCeeeeee-ccceeeeh
Confidence 999999999999999954 6677999999999997332 2489999999999999999 667776665 34667776
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
..- ..+++++..+..|.+|+++........ .. +.+....+++
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~---------------------------------~~--SpLk~Q~R~v- 204 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFKR---------------------------------IE--SPLKWQTRCV- 204 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhhh---------------------------------hc--CcccceeeEE-
Confidence 653 447888889999999999874322111 00 1111112222
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCc--cEEEEecCCCC---------CeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTS---------PVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
+.-.|....|.|+-+|.+.|..+..+ +.-..++.|.. .|++++|+|....|+|+|.||++.+||-..
T Consensus 205 --a~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 205 --ACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred --EEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchh
Confidence 22235666699999999999999877 44456666652 578899999999999999999999999776
Q ss_pred CCCC
Q 011216 472 NGEA 475 (491)
Q Consensus 472 ~~~~ 475 (491)
..+.
T Consensus 283 r~kL 286 (347)
T KOG0647|consen 283 RTKL 286 (347)
T ss_pred hhhh
Confidence 5443
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.9e-27 Score=213.98 Aligned_cols=246 Identities=20% Similarity=0.258 Sum_probs=206.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
.-+...|+++.|+++|++||+|..+|.|.|||..+.+.+.... ..|...|-+++|. +..+.+|+.++.|..+|+..
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~--~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~ 289 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR--GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRI 289 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc--CCcCceeEEEecc--CceEEEecCCCcEEEEEEec
Confidence 3348999999999999999999999999999998865544332 2278899999997 77789999999999999987
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
.+.... . ..+|...|..++|++|++++|+|+.|+.+.|||.....+...+..|.+.|..++|+|.
T Consensus 290 ~~~~~~-~--------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 290 SQHVVS-T--------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW 354 (484)
T ss_pred chhhhh-h--------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC
Confidence 654332 1 2358889999999999999999999999999999888899999999999999999999
Q ss_pred CCCEEEEEe--CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEe--eCCCcEEEeeCCCCCCcccccc
Q 011216 281 SGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 281 ~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
...+||+|+ .|+.|++||.. .+..+..+. -...|..|.|++..+.|+++ ..++.|.||+..++
T Consensus 355 q~~lLAsGGGs~D~~i~fwn~~----~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-------- 421 (484)
T KOG0305|consen 355 QSGLLATGGGSADRCIKFWNTN----TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-------- 421 (484)
T ss_pred ccCceEEcCCCcccEEEEEEcC----CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--------
Confidence 999999985 69999999997 666666554 45789999999998877764 45678999999873
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
..+..+.+|... +...++||||..+++|+.|.++++|++-..
T Consensus 422 --------------------------~~~~~l~gH~~R------Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 --------------------------KLVAELLGHTSR------VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred --------------------------ceeeeecCCcce------eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 566777888743 234478889999999999999999998664
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=191.87 Aligned_cols=250 Identities=17% Similarity=0.168 Sum_probs=203.9
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELV 243 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~ 243 (491)
..+|...+.+++|+.+|..|++++.|+++.+|+++..+..... ...+|.+.|-.++|+| ....|+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~--------------~~~gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL--------------VYRGHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh--------------cccCCCcchhhheeCCCCCcceE
Confidence 3566778999999999999999999999999999877432221 1236888899999998 556899
Q ss_pred EEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
+++.|..|++||+.++++...+....+. .-+.|+ |++++++.++.|..|.+.|.+ +.+.....+ ..-.+.-+.
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~ws-p~g~~~~~~~kdD~it~id~r----~~~~~~~~~-~~~e~ne~~ 154 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIETKGEN-INITWS-PDGEYIAVGNKDDRITFIDAR----TYKIVNEEQ-FKFEVNEIS 154 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeeccCcc-eEEEEc-CCCCEEEEecCcccEEEEEec----ccceeehhc-ccceeeeee
Confidence 9999999999999999998887544444 557787 778899999999999999998 544444333 334567788
Q ss_pred EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEec
Q 011216 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
|+.++.+++.....|.|.|...... +++..++.|. .-+++
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsL----------------------------------kpv~si~AH~------snCic 194 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSL----------------------------------KPVQSIKAHP------SNCIC 194 (313)
T ss_pred ecCCCCEEEEecCCceEEEEecccc----------------------------------ccccccccCC------cceEE
Confidence 9877888777777899999877652 5677777777 22355
Q ss_pred CcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
+.|+|+|+|+|+|+.|..+-+||+...-++..+..+.-+|+.++||.||++||+++.|-.|-|=++.++.+.
T Consensus 195 I~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 195 IEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred EEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 578889999999999999999999988888999999999999999999999999999999988777777654
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2e-26 Score=211.76 Aligned_cols=204 Identities=17% Similarity=0.194 Sum_probs=154.3
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC---CCEEEEeeCCCcEEEeeCC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~~~~~dg~i~iwd~~ 346 (491)
..+.+++.+ |++++|++|..-|+++||++. .......+..|...|.|+.|+.. .++|++++.|..|+|||+.
T Consensus 460 ~G~R~~~vS-p~gqhLAsGDr~GnlrVy~Lq----~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 460 FGFRALAVS-PDGQHLASGDRGGNLRVYDLQ----ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred cceEEEEEC-CCcceecccCccCceEEEEeh----hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 458999998 899999999999999999997 66677788899999999999852 5789999999999999998
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeE-----------EEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-----------TYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
..........++......+++....-+.+.+....++.+. .+..|.... -....+.++..|..+++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~-~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTL-SKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccc-ccceEEEeeeCCCcceEEE
Confidence 7655544444444444445544444333444333332221 111111100 0123466678889999999
Q ss_pred EecCCeEEEEECCCccEEEEec---CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCCC
Q 011216 416 GSHDSCVYVYDLVSGEQVAALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL 479 (491)
Q Consensus 416 g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 479 (491)
++.|..|+|||+.+|+..+.|+ .|.+....+...|.|-|||+...|.++.++|+.+++......
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 9999999999999999999997 467888999999999999999999999999999988665443
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.9e-26 Score=189.80 Aligned_cols=265 Identities=16% Similarity=0.186 Sum_probs=200.3
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCc--eEEEEecCCe
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPI 192 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~~~~~dg~ 192 (491)
.+.+.++.|.++|+++|.+ |.++|+|+.|-+|+|||+.+...+..+ -.|.+.|+++.|.++-. .|++|+.||.
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l---l~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL---LSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce---eccccceEEEEecCCcchhheeeecCCCc
Confidence 3467889999999999994 899999999999999999987555443 45677999999999775 8999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
|.+|+...-......+ +|...|+.++.+|.+++.++.+.|+.+++||+-.|+.-..+.- ....
T Consensus 109 i~iw~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~a 171 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKA 171 (362)
T ss_pred EEEEEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcc
Confidence 9999998765544333 5778999999999999999999999999999998876554431 2233
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
+.+.|+ +.|.+++.+..+ .|-+|.+. .......+.. ...+.++.|- ++..|++|+.|+.|.+||..+
T Consensus 172 t~v~w~-~~Gd~F~v~~~~-~i~i~q~d----~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds----- 238 (362)
T KOG0294|consen 172 TLVSWS-PQGDHFVVSGRN-KIDIYQLD----NASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDS----- 238 (362)
T ss_pred eeeEEc-CCCCEEEEEecc-EEEEEecc----cHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCC-----
Confidence 459998 777777777664 68899886 4333333332 2446666665 567899999999999999886
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc--
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-- 430 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-- 430 (491)
..+...+.+|.....-+..... |++.||++++.||.|++||+...
T Consensus 239 -----------------------------~~~~~~~~AH~~RVK~i~~~~~----~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 239 -----------------------------DTPLTEFLAHENRVKDIASYTN----PEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred -----------------------------CccceeeecchhheeeeEEEec----CCceEEEEeccCceEEEEEcccccc
Confidence 3566777777754444333333 36899999999999999999765
Q ss_pred ---cEEEEecCCCCCeeeeEe
Q 011216 431 ---EQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 431 ---~~~~~~~~h~~~v~~~~~ 448 (491)
+++..+.. ...++|+..
T Consensus 286 ~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 286 KRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred CCcceeEEeec-CCccceeee
Confidence 34555443 344555543
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=178.22 Aligned_cols=260 Identities=20% Similarity=0.292 Sum_probs=196.9
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccc----cccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD----FSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
..|.+++|+|.|.+.++|+...+++|--...-. .+...++... .-......|.+.|+|.+|+|+|++|++|
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~-----~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALI-----DLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEcccccc-----CcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 379999999999999999999998886532211 1111111100 1112234688899999999999999999
Q ss_pred ecCCeEEEEECCCCee-----eEEEeccCCCeEEEEEec---CCCCEEEEEe-CCCeEEEEeCccccCCCcceeeecccc
Q 011216 246 SSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCFGD---ESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~i~~~~---~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
+.|.+|++..++...+ ...+.-|.+.|..++|.. ..+.+|++++ .|..|++-|.. .+.....+.+|.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~----~g~~~~a~sght 183 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG----RGQGFHALSGHT 183 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC----CCCcceeecCCc
Confidence 9999999987765432 245668999999999972 2345666655 45667777776 788899999999
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee
Q 011216 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
+.|.++- +=++-.+++|+.|.+|++||++-.. .+.++........
T Consensus 184 ghilaly-swn~~m~~sgsqdktirfwdlrv~~----------------------------------~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 184 GHILALY-SWNGAMFASGSQDKTIRFWDLRVNS----------------------------------CVNTLDNDFHDGG 228 (350)
T ss_pred ccEEEEE-EecCcEEEccCCCceEEEEeeeccc----------------------------------eeeeccCcccCCC
Confidence 9998873 3367899999999999999999743 2333321111000
Q ss_pred e-EEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 397 L-IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 397 ~-~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+ ...+.+.+..|.|++|++|-.|....+||++.++.+..+..|...|.++.|+|...+|++++.|..|++-|+...-
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 0 1223344677899999999999999999999999999999999999999999999999999999999999998754
No 105
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=200.54 Aligned_cols=263 Identities=21% Similarity=0.253 Sum_probs=207.7
Q ss_pred ceecccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceE
Q 011216 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (491)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 184 (491)
..++.+.....-...+.+|.-.|+.+.|+|+...+++++.|..|+||...... .......|..+|+.+..+|.|.||
T Consensus 242 ~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s---~~~~~~~h~~~V~~ls~h~tgeYl 318 (506)
T KOG0289|consen 242 TAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS---EPTSSRPHEEPVTGLSLHPTGEYL 318 (506)
T ss_pred ceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc---CccccccccccceeeeeccCCcEE
Confidence 34444554445556789999999999999999999999999999999987653 333456788899999999999999
Q ss_pred EEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE
Q 011216 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 264 (491)
++++.|++..+.|+.++.......... ..-.+++.+|+|||..|.+|..||.|+|||+.++..+..
T Consensus 319 lsAs~d~~w~Fsd~~~g~~lt~vs~~~--------------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~ 384 (506)
T KOG0289|consen 319 LSASNDGTWAFSDISSGSQLTVVSDET--------------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAK 384 (506)
T ss_pred EEecCCceEEEEEccCCcEEEEEeecc--------------ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccccc
Confidence 999999999999999998765543221 111689999999999999999999999999999999999
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc-cccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~i~~sp~~~~l~~~~~dg~i~iw 343 (491)
|.+|.++|..++|+ .+|.+|+++.+|+.|++||+| ..+....+... ..++.++.|.+.|.+|+.++.|=.|+++
T Consensus 385 Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLR----Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 385 FPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLR----KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred CCCCCCceeEEEec-cCceEEEEEecCCeEEEEEeh----hhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999998 999999999999999999999 44555544432 2369999999999999999877666666
Q ss_pred eCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEE
Q 011216 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 423 (491)
+-.+.+ ...+..+..|....+. ..|..+.+++++++.|..++
T Consensus 460 ~k~~k~--------------------------------W~~~~~~~~~sg~st~------v~Fg~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 460 KKKTKS--------------------------------WTEIKELADHSGLSTG------VRFGEHAQYLASTSMDAILR 501 (506)
T ss_pred eccccc--------------------------------ceeeehhhhcccccce------eeecccceEEeeccchhheE
Confidence 543311 1333444444422222 24555678999999999888
Q ss_pred EEEC
Q 011216 424 VYDL 427 (491)
Q Consensus 424 iwd~ 427 (491)
++.+
T Consensus 502 ~~a~ 505 (506)
T KOG0289|consen 502 LYAL 505 (506)
T ss_pred Eeec
Confidence 8754
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-26 Score=191.75 Aligned_cols=289 Identities=21% Similarity=0.321 Sum_probs=209.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccc
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (491)
..|+.|++.|.+||+|+.||.|.|||+.+.. +.+ ...+|-.+|++++||+||+.|++++.|..|.+||+..|.....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar--~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IAR--MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhh--hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999999853 333 3456777999999999999999999999999999999987666
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCeeeEEEe-ccCC----CeEEEEEecC
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL-AHTS----DVNTVCFGDE 280 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~----~v~~i~~~~~ 280 (491)
..+.. +|+.+.|+|..+ ..++.-.+..-.+-++..++.. .+. ...+ .-.+..| .+
T Consensus 103 irf~s-----------------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~f-dr 163 (405)
T KOG1273|consen 103 IRFDS-----------------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVF-DR 163 (405)
T ss_pred EEccC-----------------ccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccc-cC
Confidence 55433 899999999443 3333333444555555543221 111 1111 1122345 48
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc-ccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
.|+++++|...|.+.++|.. +.+++..++-.. ..|..+.++..|+.|+..+.|..|+.|+++........
T Consensus 164 ~g~yIitGtsKGkllv~~a~----t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~----- 234 (405)
T KOG1273|consen 164 RGKYIITGTSKGKLLVYDAE----TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD----- 234 (405)
T ss_pred CCCEEEEecCcceEEEEecc----hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc-----
Confidence 89999999999999999997 556666665444 67889999999999999999999999998853211100
Q ss_pred cceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe-cCcccCCCcEEEEEec-CCeEEEEECCCccEEEEec
Q 011216 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF-SPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~ 437 (491)
..+.. .|....-+.+..| +..||.+|.|+++|+. ...++||....|.+++.+.
T Consensus 235 -----------------------~e~e~--~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 235 -----------------------GEVEP--EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred -----------------------CCcCh--hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 00000 0000000001111 2246668999988875 4679999999999999998
Q ss_pred CCC-CCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 438 YHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 438 ~h~-~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
+.. ....++.|+|-...+++- ..|.|++|.....
T Consensus 290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred CCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 877 567899999999988888 7899999987654
No 107
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.1e-26 Score=205.09 Aligned_cols=307 Identities=19% Similarity=0.229 Sum_probs=228.4
Q ss_pred ccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCc--eEEEEe
Q 011216 111 YLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYAS 188 (491)
Q Consensus 111 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~~~~ 188 (491)
-+|......+.+|++.|.|+...|.|.+||+|+.||+|+||.+.++.++....... .|.+++|+|.+. .||++-
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEe
Confidence 34666667789999999999999999999999999999999999998888765433 699999999774 344443
Q ss_pred cCCeEEEEECCCCccccccceec--------ccc-c--cccccC----------CCCCceecEEEEEEcCCCCEEEEEec
Q 011216 189 MSPIVHIVDVGSGTMESLANVTE--------IHD-G--LDFSAA----------DDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~--------~~~-~--~~~~~~----------~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
...+.|.+..-|..+......+ ... . ..+... ....|...|..+.|+..|.||++...
T Consensus 463 -~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~ 541 (733)
T KOG0650|consen 463 -GECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP 541 (733)
T ss_pred -cCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence 4446666654442211110000 000 0 001110 11246678999999999999998765
Q ss_pred C---CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEE
Q 011216 248 D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 248 d---g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~ 324 (491)
+ ..|.|.++...+...-|....+.|.++.|+ +...+|++++. ..|+|||+. ....+..+......|..++.
T Consensus 542 ~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FH-Ps~p~lfVaTq-~~vRiYdL~----kqelvKkL~tg~kwiS~msi 615 (733)
T KOG0650|consen 542 DSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFH-PSKPYLFVATQ-RSVRIYDLS----KQELVKKLLTGSKWISSMSI 615 (733)
T ss_pred CCCcceEEEEecccccccCchhhcCCceeEEEec-CCCceEEEEec-cceEEEehh----HHHHHHHHhcCCeeeeeeee
Confidence 3 569999998877666666677889999998 45556656554 589999997 66667777767778999999
Q ss_pred cCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecC
Q 011216 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 325 sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
+|.|..|+.++.|+.+..+|+.-.. ++.+++..|.. ...++
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlss---------------------------------kPyk~lr~H~~------avr~V 656 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSS---------------------------------KPYKTLRLHEK------AVRSV 656 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCc---------------------------------chhHHhhhhhh------hhhhh
Confidence 9999999999999999999997633 45555555652 22344
Q ss_pred cccCCCcEEEEEecCCeEEEEECC------C---ccEEEEecCCCCC----eeeeEecCCCCeEEEEECCCcEEEe
Q 011216 405 VYSTGQKYIYTGSHDSCVYVYDLV------S---GEQVAALKYHTSP----VRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 405 ~~s~~~~~l~~g~~dg~i~iwd~~------~---~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
+|.+.-.++++|+.||.+.|+.-. . --+++.+++|... |.++.|+|...+|++++.||+|++|
T Consensus 657 a~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 657 AFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 666677899999999999988532 1 1356788888765 9999999999999999999999998
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.5e-27 Score=212.42 Aligned_cols=220 Identities=16% Similarity=0.268 Sum_probs=190.6
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEe-CCCCceEEEEecCCeEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-SPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~-sp~~~~l~~~~~dg~i~i 195 (491)
...++.|.+.|+.++...+|+.|++++.|-+|++|+...+. -.-......|...|.|+++ .++...+|+|+.|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 45678999999999999999999999999999999998763 1222345678889999999 888899999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCC-CceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDG-GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
||++++.......... ....... |+..+|++++-++.|..|++|+..+.+++||..+++.+..+.+|+..|.+
T Consensus 145 WDin~~~~~l~~s~n~------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 145 WDINTGTATLVASFNN------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred EEccCcchhhhhhccc------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 9999884411111111 1111122 78889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
+..+ ++|+.+++++.||+|++||+. ..+++.++..|.+.|+++..+|+-.++.+|+.||.|..-|+++.
T Consensus 219 ll~~-dDGt~~ls~sSDgtIrlWdLg----qQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 219 LLVN-DDGTRLLSASSDGTIRLWDLG----QQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEc-CCCCeEeecCCCceEEeeecc----ccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9998 899999999999999999998 88889999999999999999999999999999999999999984
No 109
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=208.48 Aligned_cols=297 Identities=22% Similarity=0.256 Sum_probs=216.6
Q ss_pred EEEEEcCC---CCEEEEEECCCeEEEEECCCCeEE---EEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 128 YVSQFSAD---GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 128 ~~~~~s~d---g~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
++..|++- ...|+.+.+||.|.++|....... .++.....|...|.++.|.|....|++++.|.++++||++++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 44566653 347999999999999998753111 123445678889999999997788999999999999999988
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCe--------------------
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK-------------------- 260 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~-------------------- 260 (491)
++..... ..||...|.+++|.|. ...|++|+.||.|.|||+.-..
T Consensus 133 ~l~G~~~--------------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 133 RLVGGRL--------------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eeeccee--------------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 7754421 2378889999999995 4578999999999999986432
Q ss_pred e-------eEEEeccCCC----eEEEEEecCCCCEEEEEeC-CCeEEEEeCccccCCC--cce--eeeccc---cccEEE
Q 011216 261 L-------SLRILAHTSD----VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKG--KPA--GVLMGH---LEGITF 321 (491)
Q Consensus 261 ~-------~~~~~~~~~~----v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~--~~~--~~~~~~---~~~i~~ 321 (491)
+ +.....+... |+.+.| .|+..|++++. |+.|+|||++...... .+. ..+..| .-++++
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 0 0111233333 444555 67788888887 9999999998443211 111 122223 345778
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEE
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+.....|.+|.+.+.|+.|++||+..... .++..+.++......++.
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~--------------------------------sP~~~~sg~~~~sf~vks- 323 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSI--------------------------------SPVAEFSGKLNSSFYVKS- 323 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCc--------------------------------CchhhccCcccceeeeee-
Confidence 88888889999888999999999988542 344445554433222222
Q ss_pred ecCcccCCCcEEEEEecCCeEEEEECCCcc-EEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCCCCCC
Q 011216 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 402 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
..+||+.+|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|..- -++++++|..+++|++..+.+..
T Consensus 324 ---~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 324 ---ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred ---ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 456799999999999999999998765 4566779999999999998543 57788999999999997765544
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.1e-25 Score=210.84 Aligned_cols=281 Identities=17% Similarity=0.207 Sum_probs=217.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
..|...-+.++|.|+|.+|++++.||.|++|+..........+. .+...|.+++. .+.+|++++.+++|.+|.+.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID--ISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh--ccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 46788899999999999999999999999999876522222221 14446766665 455899999999999999988
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
++...+... .+.++.+++|+-+|++++.|+.|-.|++.+..+......+++|.++|.++.|+ |
T Consensus 86 ~~~~~iL~R----------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p 148 (933)
T KOG1274|consen 86 GEEDTILAR----------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-P 148 (933)
T ss_pred CCccceeee----------------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEc-C
Confidence 876544332 22389999999999999999999999999999999999999999999999997 8
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeecc-------c-cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------H-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~-~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
.+++||+.+.||.|++||+. .+.....+.+ . ...+..++|+|+|..|+..+.|+.|++|+......
T Consensus 149 ~~~fLAvss~dG~v~iw~~~----~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~-- 222 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQ----DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL-- 222 (933)
T ss_pred CCCEEEEEecCceEEEEEcc----cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee--
Confidence 89999999999999999997 4444333322 1 45577899999988899999999999999887433
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
...+........+ ....|||+|+|||+++.||.|.|||..+.+.
T Consensus 223 --------------------------------~f~Lr~~~~ss~~----~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 223 --------------------------------QFKLRDKLSSSKF----SDLQWSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred --------------------------------heeecccccccce----EEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence 2223322221222 2236778999999999999999999987322
Q ss_pred EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
......|.+++|.|+++.|-.-...|...+|.
T Consensus 267 ----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 267 ----HEFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred ----ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 22346799999999998766555566555543
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=186.95 Aligned_cols=261 Identities=21% Similarity=0.281 Sum_probs=201.2
Q ss_pred cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCEEE
Q 011216 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELV 243 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~ 243 (491)
..|+..|.++...--|+.|++++.|++|+|+.+..+...... ....||.++|..++|-. -|.+|+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-------------~~L~Gh~GPVwqv~wahPk~G~iLA 74 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-------------AELTGHSGPVWKVAWAHPKFGTILA 74 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-------------eEecCCCCCeeEEeecccccCcEee
Confidence 467778888888888999999999999999999876541111 12347999999999975 799999
Q ss_pred EEecCCeEEEEECCCCeee--EEEeccCCCeEEEEEecCC-CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEE
Q 011216 244 AGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
+++.||.|.||.-.+++.. .....|...|++++|.|.+ +-.|++++.||.|.|.+.+... ..........|.-.|+
T Consensus 75 ScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 75 SCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVN 153 (299)
T ss_pred EeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-Cccchhhhhccccccc
Confidence 9999999999999888543 3445799999999998644 5678999999999999987441 2233445678999999
Q ss_pred EEEEcCC---C-----------CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeE
Q 011216 321 FIDSRGD---G-----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 321 ~i~~sp~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
+++|.|- | +.|++|+.|+.|+||+.....- ..-.
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--------------------------------~~e~ 201 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--------------------------------KLER 201 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--------------------------------hhhh
Confidence 9999985 4 5699999999999999887321 1223
Q ss_pred EEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-c--EEEEecCCCCCeeeeEecCCCCeEEEEECCCc
Q 011216 387 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-E--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 463 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~ 463 (491)
++.+|.. .+....++|...-...+||+++.||+|.||..... + ....++.....+..++||+.|+.|+.++.|+.
T Consensus 202 ~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 202 TLEGHKD--WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNK 279 (299)
T ss_pred hhhhcch--hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcE
Confidence 3666663 23344566665545678999999999999987521 1 12234445678999999999999999999999
Q ss_pred EEEecCCCCCC
Q 011216 464 VVRWEFPGNGE 474 (491)
Q Consensus 464 i~iw~~~~~~~ 474 (491)
|.+|.-+...+
T Consensus 280 vtlwke~~~Gk 290 (299)
T KOG1332|consen 280 VTLWKENVDGK 290 (299)
T ss_pred EEEEEeCCCCc
Confidence 99998776544
No 112
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=9.5e-26 Score=188.72 Aligned_cols=283 Identities=23% Similarity=0.313 Sum_probs=214.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-----------EEEEeeccCCceeEEEeEeC-------CCCceEEEEe
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWK-----------IQKDILAKSLRWTVTDTSLS-------PDQRHLVYAS 188 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~~~~~~~~v~~l~~s-------p~~~~l~~~~ 188 (491)
...+.|||||..|++-+.|..+.+|++..... .+... .-.....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~-r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSY-RYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeE-EeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34689999999999999999999999853200 00011 11223467888875 6778999999
Q ss_pred cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEEC-CCCeeeE--EE
Q 011216 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSL--RI 265 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~--~~ 265 (491)
.+.-|++||.-+|+.......-...+.+ ....+++|+|||.+|++|. ..+|+++|+ +.|.... ..
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~-----------taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEY-----------TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhh-----------hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 9999999999999886655433222111 1467899999999988875 668999999 4443211 11
Q ss_pred -----eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CCc
Q 011216 266 -----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA 339 (491)
Q Consensus 266 -----~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg~ 339 (491)
.+..+-|.|++|+|.+...++.|+....+-|+.-. ...++..+.+|.+.|+.+.|.++|+.|.+|+. |..
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 13467889999998888899999999888888765 77888999999999999999999999999876 667
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
|..||+|... .++..+..|.. .+--++.| ...|++++|++|+.|
T Consensus 275 Il~WDiR~~~---------------------------------~pv~~L~rhv~-~TNQRI~F--Dld~~~~~LasG~td 318 (406)
T KOG2919|consen 275 ILCWDIRYSR---------------------------------DPVYALERHVG-DTNQRILF--DLDPKGEILASGDTD 318 (406)
T ss_pred EEEEeehhcc---------------------------------chhhhhhhhcc-CccceEEE--ecCCCCceeeccCCC
Confidence 9999999743 33333333332 01123333 345789999999999
Q ss_pred CeEEEEECCC-ccEEEEecCCCCCeeeeEecCCCCeEEEEECCC
Q 011216 420 SCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 420 g~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg 462 (491)
|.|++||++. |..+..+..|+..++.++++|--+++++++...
T Consensus 319 G~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 9999999988 787888888999999999999988999987653
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.3e-25 Score=184.56 Aligned_cols=244 Identities=20% Similarity=0.295 Sum_probs=188.4
Q ss_pred CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
....|..+.|+|.+..|++++.||++++|++.......... |..++.+++|.++. .+++|+.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----------------~~~plL~c~F~d~~-~~~~G~~ 73 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----------------HGAPLLDCAFADES-TIVTGGL 73 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-----------------cCCceeeeeccCCc-eEEEecc
Confidence 34579999999999999999999999999998775443333 55699999999744 6999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC
Q 011216 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~ 327 (491)
||.|+.+|+.++.. ..+..|...|.||.++ .....+++|+.|++|++||.+ .......+. ....|.++...
T Consensus 74 dg~vr~~Dln~~~~-~~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R----~~~~~~~~d-~~kkVy~~~v~-- 144 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNE-DQIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPR----NKVVVGTFD-QGKKVYCMDVS-- 144 (323)
T ss_pred CceEEEEEecCCcc-eeeccCCCceEEEEee-ccCCeEEEcccCccEEEEecc----ccccccccc-cCceEEEEecc--
Confidence 99999999998876 3556899999999998 667789999999999999998 433333333 23478888775
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
+..|++|+.|..+.+||++++....+.. .+.....+++ .++-
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~r-----------------------------------eS~lkyqtR~---v~~~ 186 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRR-----------------------------------ESSLKYQTRC---VALV 186 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhc-----------------------------------cccceeEEEE---EEEe
Confidence 6689999999999999999965433110 1111222222 2344
Q ss_pred CCCcEEEEEecCCeEEEEECCCc----cEEEEecCCC---------CCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 408 TGQKYIYTGSHDSCVYVYDLVSG----EQVAALKYHT---------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 408 ~~~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
|++.=.++++-||.|.+=.+... +....++.|. -+|++++|+|-...||||+.||.|.+||+.+.+.
T Consensus 187 pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr 266 (323)
T KOG1036|consen 187 PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR 266 (323)
T ss_pred cCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh
Confidence 46777888999999988776655 4455667674 3799999999999999999999999999987665
Q ss_pred CC
Q 011216 475 AA 476 (491)
Q Consensus 475 ~~ 476 (491)
..
T Consensus 267 l~ 268 (323)
T KOG1036|consen 267 LK 268 (323)
T ss_pred hh
Confidence 43
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-25 Score=207.93 Aligned_cols=302 Identities=17% Similarity=0.219 Sum_probs=221.0
Q ss_pred cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCce-EEEEe
Q 011216 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-LVYAS 188 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~~~~ 188 (491)
.+...+..+.++++.+.|+++.=+|--..+|.|..+|+|.++|+..++.+.... ...+.|+.++|..||+. |++++
T Consensus 188 Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk---~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 188 NVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK---QDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred EeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE---ccccceeEEEeccCCCeeEEecc
Confidence 334445567788999999999999999999999999999999999986666543 22468999999999965 55566
Q ss_pred cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe----eeEE
Q 011216 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLR 264 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~ 264 (491)
..|.+.+||++..+....... .|.+.|....|.|....+++++.|..+++|=.+++. .++.
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~n---------------ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~ 329 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRN---------------AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS 329 (910)
T ss_pred CCceEEEEEcCCCeeeeeeec---------------cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheee
Confidence 679999999998776544331 133345555555555555555555544444222110 0000
Q ss_pred Eec-----------------------------------------------------------------------------
Q 011216 265 ILA----------------------------------------------------------------------------- 267 (491)
Q Consensus 265 ~~~----------------------------------------------------------------------------- 267 (491)
-.+
T Consensus 330 R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~ 409 (910)
T KOG1539|consen 330 RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREK 409 (910)
T ss_pred ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhh
Confidence 001
Q ss_pred -------------------------------cC------CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee
Q 011216 268 -------------------------------HT------SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (491)
Q Consensus 268 -------------------------------~~------~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 310 (491)
+. ..+++++.+ ..|++.+.|+..|.|-+|++. .+....
T Consensus 410 ~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~fNmQ----SGi~r~ 484 (910)
T KOG1539|consen 410 EWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRFNMQ----SGIHRK 484 (910)
T ss_pred hhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEEEcc----cCeeec
Confidence 11 345667776 678888888888888888886 555555
Q ss_pred ee---ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEE
Q 011216 311 VL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 311 ~~---~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
.+ ..|..+|+.++...-++.+++++.+|.+++||+.+.. .+..
T Consensus 485 sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~----------------------------------l~~~ 530 (910)
T KOG1539|consen 485 SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV----------------------------------LKKS 530 (910)
T ss_pred ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc----------------------------------eeee
Confidence 55 5799999999999989999999999999999998732 1222
Q ss_pred EcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
++.... ...+.++.....++.+..|-.|+++|..+.+.+..+.+|.+.|++++|||||++|++++.|++|++|
T Consensus 531 l~l~~~-------~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~w 603 (910)
T KOG1539|consen 531 LRLGSS-------ITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTW 603 (910)
T ss_pred eccCCC-------cceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEE
Confidence 221111 1111233346688999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 011216 468 EFPGNGEA 475 (491)
Q Consensus 468 ~~~~~~~~ 475 (491)
|+.++...
T Consensus 604 Dlpt~~lI 611 (910)
T KOG1539|consen 604 DLPTGTLI 611 (910)
T ss_pred eccCccee
Confidence 99998654
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.9e-26 Score=198.22 Aligned_cols=270 Identities=19% Similarity=0.268 Sum_probs=202.9
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEEEECCCCcccc-ccceeccccccccccCC
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMES-LANVTEIHDGLDFSAAD 222 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~ 222 (491)
...+.+||+.+|....+...... ..-.++..- .+.+++++.. ...|.+|.+....... ...
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~--a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v-------------- 79 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYL--AQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIV-------------- 79 (476)
T ss_pred CcceeEEecCCCceeEEecCccc--ccchhhhhh-chhheeeecccCccccccccCchhhhhhhcc--------------
Confidence 34699999999855444322101 111111111 2356666654 3579999987554433 111
Q ss_pred CCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccc
Q 011216 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~ 302 (491)
-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+ .++.+|++|+.||.|.+|++...
T Consensus 80 ---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 80 ---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEee
Confidence 12279999999999999999899999999999999999999999999999998 89999999999999999987421
Q ss_pred -----cCCCcceeeeccccccEEEEEEcCC--CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcc
Q 011216 303 -----NVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 303 -----~~~~~~~~~~~~~~~~i~~i~~sp~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
....++...+..|.-+|+.+...+. ..+|++++.|.++++||+..+
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--------------------------- 208 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--------------------------- 208 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---------------------------
Confidence 1255788899999999999988764 467999999999999999873
Q ss_pred cccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc----------------cEEEEecCC
Q 011216 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG----------------EQVAALKYH 439 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~----------------~~~~~~~~h 439 (491)
..+.++.... .+ .+.+.+|-++.+++|+.+|.|.+.++... ..+..+.+|
T Consensus 209 -------~LLlti~fp~---si----~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 209 -------VLLLTITFPS---SI----KAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred -------eeeEEEecCC---cc----eeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 3333332222 12 22356667999999999999998886432 345567789
Q ss_pred CC--CeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 440 TS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 440 ~~--~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
.+ .|+|++.+-||.+|++|+.||.|+|||+.+.....
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 88 99999999999999999999999999998765443
No 116
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6.1e-27 Score=188.89 Aligned_cols=249 Identities=12% Similarity=0.223 Sum_probs=203.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
-.+.+|.+.|+...+..+..+.|+++.|-+-+|||.-+|..+.. -.|..-|.+++|+.|.++|++|+.+..++|+|
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs----f~hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS----FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh----hhhhheeeeEEecccchhhhccchHHHhhhhh
Confidence 36789999999999999999999999999999999999865554 34555899999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
++..+.. +....+|++.|..+.|....+.|+++..|++|++||..++..+.++ ..+.+|+++.+
T Consensus 129 ln~p~Ap---------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-~~~s~VtSlEv 192 (334)
T KOG0278|consen 129 LNRPKAP---------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-EFNSPVTSLEV 192 (334)
T ss_pred ccCCCCC---------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-ecCCCCcceee
Confidence 8765431 1123478889999999998888999999999999999999998888 45678999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+ +++++|. -...+.|.+||.. ....+.... -...|.+...+|+...+++|+.|..++.||..+..
T Consensus 193 s-~dG~ilT-ia~gssV~Fwdak----sf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-------- 257 (334)
T KOG0278|consen 193 S-QDGRILT-IAYGSSVKFWDAK----SFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-------- 257 (334)
T ss_pred c-cCCCEEE-EecCceeEEeccc----cccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCc--------
Confidence 8 7787664 4566799999987 555555544 34568889999999999999999999999999843
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEE-cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 433 (491)
.+-.+ ++|... +.+..|+|+|...++|+.||+|++|.+..++..
T Consensus 258 --------------------------Ei~~~nkgh~gp------VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 --------------------------EIGSYNKGHFGP------VHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred --------------------------eeeecccCCCCc------eEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 23333 444422 233468889999999999999999998766543
No 117
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.4e-26 Score=200.98 Aligned_cols=265 Identities=16% Similarity=0.214 Sum_probs=195.2
Q ss_pred eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
....+|...|.++++.|.|..|++|+.|.+|++||+......... +.... ....| .|.+++|++.|..|
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~-fr~l~--------P~E~h--~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS-FRQLQ--------PCETH--QINSLQYSVTGDQI 229 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh-hhccC--------ccccc--ccceeeecCCCCeE
Confidence 445677889999999999999999999999999999754321110 11000 01123 79999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEE------------EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee
Q 011216 243 VAGSSDDCIYVYDLEANKLSLR------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~------------~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 310 (491)
++.+.....+|+|....+.... .++|...++|.+|+|.+.+.|++++.||++++||+.......+.+.
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 9999999999999876554332 2479999999999998999999999999999999974332222221
Q ss_pred ee--ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 311 VL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 311 ~~--~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
.. .+..-+++.++|+|+|+.||+|..||.|.+|+....... .....-
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------------------p~~~vk 358 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------------------PVMKVK 358 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------------------cceEee
Confidence 11 233456899999999999999999999999998764332 122233
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc-EEEEecC--CCCCeeeeEecCCCCeEEEEEC-----
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKY--HTSPVRDCSWHPSQPMLVSSSW----- 460 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~----- 460 (491)
+.|.....+ .++.||+||++|++-+.|+.+++||++..+ ++....+ ...+-+.++|||+.++|++|..
T Consensus 359 ~AH~~g~~I----tsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 359 DAHLPGQDI----TSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred eccCCCCce----eEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence 444432223 234677899999999999999999998754 4444432 2345688999999999999853
Q ss_pred -CCcEEEecCCCCC
Q 011216 461 -DGDVVRWEFPGNG 473 (491)
Q Consensus 461 -Dg~i~iw~~~~~~ 473 (491)
-|++.++|..+-+
T Consensus 435 ~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLD 448 (641)
T ss_pred CCceEEEEecccee
Confidence 4678888866543
No 118
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=4e-24 Score=196.51 Aligned_cols=276 Identities=14% Similarity=0.129 Sum_probs=193.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceE-EEEecCCeEEEEECCCCccccccceecccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
++.+++++.|+.|++||+.+++.+.... .+. .+..++|+|+++.+ ++++.++.|++||..+++.......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~---~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----- 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFP---VGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----- 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEE---CCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence 3578899999999999998886555432 222 36789999999876 4567789999999988765432211
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC-
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN- 292 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg- 292 (491)
+ ..+..++|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++|+ ++++++++++.++
T Consensus 72 -----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 72 -----------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTN 137 (300)
T ss_pred -----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCC
Confidence 0 024568999999977655 4589999999998877766642 3456889998 7888888888765
Q ss_pred eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCCCCccccccCcccceeeceeecCC
Q 011216 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
.+.+||.. ......... ....+..++|+|++++|+++ ..++.|++||+.+...
T Consensus 138 ~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~--------------------- 191 (300)
T TIGR03866 138 MAHFIDTK----TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV--------------------- 191 (300)
T ss_pred eEEEEeCC----CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------------------
Confidence 56778976 444433332 22345789999999988654 4689999999987432
Q ss_pred CCcccccCCCCCeeEEEcccceeee-eEEEEecCcccCCCcEEEEE-ecCCeEEEEECCCccEEEEecCCCCCeeeeEec
Q 011216 372 PQARDLKHPCDQSVATYKGHSVLRT-LIRCHFSPVYSTGQKYIYTG-SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
+..+..+..... .........|+|++++++++ ..++.|.+||+.+++.+..+. +...+.+++|+
T Consensus 192 -------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 257 (300)
T TIGR03866 192 -------------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT 257 (300)
T ss_pred -------------eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence 111111100000 00001123577899986554 456789999999988876654 44578999999
Q ss_pred CCCCeEEEE-ECCCcEEEecCCCCCC
Q 011216 450 PSQPMLVSS-SWDGDVVRWEFPGNGE 474 (491)
Q Consensus 450 ~~~~~l~s~-~~Dg~i~iw~~~~~~~ 474 (491)
|+|++|+++ +.+|.|.+||+.++..
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 999999886 4689999999998764
No 119
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=187.00 Aligned_cols=270 Identities=22% Similarity=0.344 Sum_probs=224.5
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 217 (491)
.+++...++++.. .......+|...|..++-......+.+++.|.+.+||.++++.++....
T Consensus 126 rivssFk~~t~~~---------~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~--------- 187 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF---------RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT--------- 187 (481)
T ss_pred hheeeecCCceeE---------eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec---------
Confidence 4666666766432 1222446888899999988878899999999999999999999865543
Q ss_pred cccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEEC------CC---------------------------------
Q 011216 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL------EA--------------------------------- 258 (491)
Q Consensus 218 ~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~------~~--------------------------------- 258 (491)
||.+.|.+++|++.+.++++++.|++..||.. ..
T Consensus 188 -------GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~t 260 (481)
T KOG0300|consen 188 -------GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHT 260 (481)
T ss_pred -------ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCce
Confidence 79999999999999999999999999999972 11
Q ss_pred -CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC
Q 011216 259 -NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 259 -~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d 337 (491)
..++..+.+|.+.|.+..|. ..++.+++++.|.+..+||+. .+.++..+.+|....+.++-+|..+++++.+.|
T Consensus 261 iRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVE----tge~v~~LtGHd~ELtHcstHptQrLVvTsSrD 335 (481)
T KOG0300|consen 261 IRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVE----TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRD 335 (481)
T ss_pred eeeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeec----cCceeccccCcchhccccccCCcceEEEEeccC
Confidence 01345677899999999997 889999999999999999998 899999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
.+.++||++.. .+.+..|.||.. ++....|.. +..+++|+
T Consensus 336 tTFRLWDFRea---------------------------------I~sV~VFQGHtd--tVTS~vF~~-----dd~vVSgS 375 (481)
T KOG0300|consen 336 TTFRLWDFREA---------------------------------IQSVAVFQGHTD--TVTSVVFNT-----DDRVVSGS 375 (481)
T ss_pred ceeEeccchhh---------------------------------cceeeeeccccc--ceeEEEEec-----CCceeecC
Confidence 99999999852 367889999984 444444543 45699999
Q ss_pred cCCeEEEEECCCc-cEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCC
Q 011216 418 HDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 478 (491)
Q Consensus 418 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~ 478 (491)
.|.+|++||+++. .++.+++ -.++++.++.+..++.|+.--++..|++||+++......|
T Consensus 376 DDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlP 436 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLP 436 (481)
T ss_pred CCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCC
Confidence 9999999999875 4677776 5678999999998889999988999999999988765444
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.8e-25 Score=181.79 Aligned_cols=278 Identities=17% Similarity=0.158 Sum_probs=201.0
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCC--CCceEEEEecCCeEEEEE
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~dg~i~iwd 197 (491)
.+|.+-|.|+.|.+.|+++|+|+.|++|+|||..++ .........+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 578899999999999999999999999999996543 23344445678888999999976 479999999999999998
Q ss_pred CCCCcccc----ccceeccccccccccCCCCCceecEEEEEEcC--CCCEEEEEecCCeEEEEECCCCeee------EEE
Q 011216 198 VGSGTMES----LANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLS------LRI 265 (491)
Q Consensus 198 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~------~~~ 265 (491)
-....... -...... ..-+..|+++.|.| -|-.|++++.||.++||+......+ ..+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl-----------~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTL-----------VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ecccccccccceeEEEEEe-----------ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 53211111 0011110 11234799999999 4678999999999999987553222 122
Q ss_pred e-------ccCCCeEEEEEecC--CCCEEEEEeCC-----CeEEEEeCccccCCCcceeeeccccccEEEEEEcCC----
Q 011216 266 L-------AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---- 327 (491)
Q Consensus 266 ~-------~~~~~v~~i~~~~~--~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---- 327 (491)
. .+..+..|+.|+|. ...+|+.|+.+ +.++||...........+..+.+|..+|+.|+|.|+
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 1 35667889999843 24578887766 588999876444355566778899999999999996
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
-..||+++.|| |+||.+........ .
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~-----------------------------------~------------------ 264 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIE-----------------------------------E------------------ 264 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhh-----------------------------------h------------------
Confidence 35789999999 99999875221100 0
Q ss_pred CCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 408 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.-+.++..-+. + .-+.+..+..|.+.|..+.|+-.|..|+++|.||.|++|...-.
T Consensus 265 ---ee~~~~~~~~~---l---~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 265 ---EEVLAPDLMTD---L---PVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ---hcccCCCCccc---c---ceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 00000000011 1 23456778899999999999999999999999999999987644
No 121
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=200.19 Aligned_cols=249 Identities=20% Similarity=0.255 Sum_probs=199.1
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
....|.+.+..+.|-++...|++|+.|..|++|++..++......+. |-.++|+++.|.+++++++
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa--------------Gs~g~it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA--------------GSLGNITSIDFDSDNKHVI 235 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh--------------ccCCCcceeeecCCCceEE
Confidence 34678889999999999999999999999999999877632222211 2334799999999999999
Q ss_pred EEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
+++.|+.+++|++.+.+...++.+|++.|+++.|. .....+++|+.|.+|++||+. ...+...+. ....+..|.
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~-~~~~~vVsgs~DRtiK~WDl~----k~~C~kt~l-~~S~cnDI~ 309 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK-LSHSRVVSGSADRTIKLWDLQ----KAYCSKTVL-PGSQCNDIV 309 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccceeeehhh-ccccceeeccccchhhhhhhh----hhheecccc-ccccccceE
Confidence 99999999999999999999999999999999997 555559999999999999997 444444332 234455566
Q ss_pred EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEec
Q 011216 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
.+ ...+++|..|+.|++||++.. ........+.. ..+
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~----------------------------------~~~~sv~~gg~-------vtS 346 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSA----------------------------------DKTRSVPLGGR-------VTS 346 (459)
T ss_pred ec--ceeeeecccccceEEEeccCC----------------------------------ceeeEeecCcc-------eee
Confidence 55 557899999999999999984 33333333331 233
Q ss_pred CcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC----CCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
...+++|..|.+.+.|.++.+.|+++.+....+.+. ....+.+.|||++.|+++||.||.|+||++.+++..
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE 422 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE 422 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence 356668999999999999999999998888777532 234889999999999999999999999999987643
No 122
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.6e-26 Score=190.96 Aligned_cols=210 Identities=24% Similarity=0.312 Sum_probs=168.8
Q ss_pred CceecEEEEEEcCCCCEEEEEecCCeEEEEECCC-----------------C-eeeEEEeccCCCeEEEEEecCCCCEEE
Q 011216 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----------------N-KLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 225 ~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~-----------------~-~~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (491)
.|+.++.+.+|++||.++++|+.|..|+|+|++. + -.++++..|...|+++.|+ |...+|+
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH-Pre~ILi 188 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH-PRETILI 188 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec-chhheEE
Confidence 3777999999999999999999999999999862 1 2456777999999999998 7889999
Q ss_pred EEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeece
Q 011216 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 287 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
+|+.|++|++||+.... .+..........+|.++.|+|.|.+|++|..-..+++||+.+.++-...++
T Consensus 189 S~srD~tvKlFDfsK~s--aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP---------- 256 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTS--AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP---------- 256 (430)
T ss_pred eccCCCeEEEEecccHH--HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc----------
Confidence 99999999999986221 111112223567899999999999999999999999999998443221110
Q ss_pred eecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec-CCC-CCee
Q 011216 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT-SPVR 444 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~-~~v~ 444 (491)
-..|. ..+.+..||+.+++.++|+.||.|++||-.+++++.++. +|. ..|.
T Consensus 257 ---------------------d~qht------~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 257 ---------------------DDQHT------GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC 309 (430)
T ss_pred ---------------------ccccc------cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee
Confidence 01122 223344677899999999999999999999999998885 565 5699
Q ss_pred eeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 445 DCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 445 ~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+..|..+++++++.+.|..+++|++.++..
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999999999999998764
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1e-23 Score=186.65 Aligned_cols=301 Identities=17% Similarity=0.249 Sum_probs=217.2
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCC--------eEEEEEC------------CCC------------eEEEEE
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS--------QIRIYDV------------ERG------------WKIQKD 162 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg--------~i~vw~~------------~~~------------~~~~~~ 162 (491)
...+...+|...|.|++.+||.-++++|-..| .+++||. +.+ ..+...
T Consensus 95 ~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 95 RSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred hhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 34556678888888888888877777665444 4788882 211 000000
Q ss_pred e-------------------eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCC
Q 011216 163 I-------------------LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 163 ~-------------------~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
. ..+..+..|....|+|.+..|+.....+.+.+|+.+.+.......+.+..+.
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-------- 246 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-------- 246 (626)
T ss_pred cCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc--------
Confidence 0 0112223567778999776666666678999999988876555444333221
Q ss_pred CCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc
Q 011216 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 303 (491)
.-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++.. .++.+ ++|+.|..|..||-.-..
T Consensus 247 ----k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~Gtl-lSGgKDRki~~Wd~~y~k 319 (626)
T KOG2106|consen 247 ----KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGTL-LSGGKDRKIILWDDNYRK 319 (626)
T ss_pred ----eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCccE-eecCccceEEeccccccc
Confidence 3699999999997 8999999999999999888888777999999999997 66655 569999999999832000
Q ss_pred --------C----------------------------CCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 304 --------V----------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 304 --------~----------------------------~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
. .........+|.+....++.+|+...+++++.|+.+++|+ ..
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~ 398 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DH 398 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CC
Confidence 0 0001122346778888999999999999999999999999 21
Q ss_pred CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
+..-+. .+....-+..|.|.| .+|.|+..|...+.|.
T Consensus 399 -----------------------------------k~~wt~-------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 399 -----------------------------------KLEWTK-------IIEDPAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred -----------------------------------ceeEEE-------EecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence 111111 111222344677788 9999999999999999
Q ss_pred CCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 428 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
++...+..-.. ..+++.++|+|+|.+||.|+.|+.|++|.++.+...
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 98665554444 889999999999999999999999999999887643
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.3e-24 Score=199.28 Aligned_cols=300 Identities=19% Similarity=0.258 Sum_probs=228.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEE-EEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~---~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
.+.+|++.|+++.|+|.+..|++++.|.++.+|.-.+. +.. ..+-...+..+......|+|++..+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45699999999999999999999999999999987765 211 11222223344578899999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe----eeEEEeccCC
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTS 270 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~ 270 (491)
+|.......-.... ...||...|.+++|.|.|.+|++.+.|-+-+++-.-..+ .+.+-.-|.-
T Consensus 342 lWkt~d~~~w~~~~-------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEP-------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred EEeccCccceeecc-------------ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 99832221111111 123788899999999999999999999999998664222 2233346888
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCcc----------c---c--------------------------CC------
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRC----------L---N--------------------------VK------ 305 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~----------~---~--------------------------~~------ 305 (491)
.++|+++- +....|++|.....+|+|+... . . ..
T Consensus 409 Dl~c~~~v-n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 409 DLTCLSFV-NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV 487 (764)
T ss_pred cceeeehc-cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence 89999997 5477888999999999998540 0 0 00
Q ss_pred ---------------------------CcceeeeccccccEEEEEEcCCCCEEEEeeCCC-----cEEEeeCCCCCCccc
Q 011216 306 ---------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNAS 353 (491)
Q Consensus 306 ---------------------------~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 353 (491)
...+..+.+|.-.|.+++.+|+++++|+++... .|++|+..+.
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----- 562 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----- 562 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-----
Confidence 001234567888999999999999999987653 4899998773
Q ss_pred cccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc--
Q 011216 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-- 431 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-- 431 (491)
..+..+.+|+...+. ++|||||++|++.+.|.++.+|......
T Consensus 563 -----------------------------~~~~~L~~HsLTVT~------l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 563 -----------------------------LQVQELEGHSLTVTR------LAFSPDGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred -----------------------------hhhheecccceEEEE------EEECCCCcEEEEeecCceEEeeeeecccch
Confidence 344567778744433 3778899999999999999999975432
Q ss_pred --EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 432 --QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 432 --~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
....++.|...|.++.|+|++.+++|+|.|.+|++|..+..
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 22346789999999999999999999999999999999887
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-24 Score=205.22 Aligned_cols=248 Identities=17% Similarity=0.242 Sum_probs=201.6
Q ss_pred CCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc-cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 167 ~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
.|...-+.++|.|+|.+|++++.||.|++|+..... ...... .+...|.+++.. +.+|++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~----------------~~g~~v~~ia~~--s~~f~~~ 72 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID----------------ISGELVSSIACY--SNHFLTG 72 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh----------------ccCceeEEEeec--ccceEEe
Confidence 566678899999999999999999999999976542 111111 022356666654 5589999
Q ss_pred ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
+.+++|.+|.+.+++.-..+...+-++++++|+ .+|++++.|+.|-.|++-+.. .......+.+|.++|.++.|+
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~~ 147 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSYD 147 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeEc
Confidence 999999999999988766666678899999998 899999999999999999997 777888999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce--eeeeEEEEec
Q 011216 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV--LRTLIRCHFS 403 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 403 (491)
|++++||+.+.||.|++||+.+....... .+-.. .....+.+..
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl----------------------------------~~v~k~n~~~~s~i~~~ 193 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTL----------------------------------TGVDKDNEFILSRICTR 193 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhc----------------------------------ccCCccccccccceeee
Confidence 99999999999999999999975433222 11100 0011244556
Q ss_pred CcccCCCcEEEEEecCCeEEEEECCCccEEEEec--CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
++|+|++..+++.+.|+.|.+|+..+++....+. .+...+.+++|+|.|+|||+++.||.|.|||+.+
T Consensus 194 ~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 194 LAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 6888898889999999999999999999888875 3455599999999999999999999999999987
No 126
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.5e-24 Score=176.91 Aligned_cols=240 Identities=20% Similarity=0.216 Sum_probs=199.6
Q ss_pred eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
+...+|+.+++.+.++.+|.+|.+++.|.+..||-..+|+.+.... ||++.|+|+....+.+.+
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~----------------GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD----------------GHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec----------------CCCceEEEEEecCCccee
Confidence 3457899999999999999999999999999999987777654433 799999999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC-----CCeEEEEeCcccc---CCCcceeeecc
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN---VKGKPAGVLMG 314 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~---~~~~~~~~~~~ 314 (491)
++|+.|.++++||+++|+++..+ ....+|..+.|+ .++++++.... .+.|.++|++... ....+...+..
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~-k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t 145 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATW-KTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT 145 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEe-ecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC
Confidence 99999999999999999998888 456789999998 77887776654 4679999997332 23456777788
Q ss_pred ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 315 ~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
+...++.+.|.|-+++|++|..||.|.+||++++. ..+..-+.|..
T Consensus 146 ~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---------------------------------~~v~s~~~h~~- 191 (327)
T KOG0643|consen 146 PDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---------------------------------ELVDSDEEHSS- 191 (327)
T ss_pred CccceeeeeecccCCEEEEecCCCcEEEEEcccCc---------------------------------eeeechhhhcc-
Confidence 88999999999999999999999999999999843 22333333332
Q ss_pred eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEEC
Q 011216 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 460 (491)
....+.+++|..++++++.|.+-++||..+.+.++++. -..||++.+++|....++-|+.
T Consensus 192 -----~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 192 -----KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred -----ccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCC
Confidence 23445778899999999999999999999999999987 4679999999998887776653
No 127
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.1e-24 Score=200.84 Aligned_cols=301 Identities=22% Similarity=0.287 Sum_probs=233.0
Q ss_pred cCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 121 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
..-.++|+.++|..||+ .+|+|+..|.+-+||++....... ....|.+.|..+.|.|....+++++.|+.+++|-.+
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v--~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV--TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee--eeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 33369999999999997 567777889999999998644433 345677789999999999999999999988888655
Q ss_pred CCccc-cccceeccc----------------------c-----------------------------c------c-----
Q 011216 200 SGTME-SLANVTEIH----------------------D-----------------------------G------L----- 216 (491)
Q Consensus 200 ~~~~~-~~~~~~~~~----------------------~-----------------------------~------~----- 216 (491)
++.-. +.......| + + .
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 33210 000000000 0 0 0
Q ss_pred -ccccCC----------------------------CC----Cce------ecEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 011216 217 -DFSAAD----------------------------DG----GYS------FGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (491)
Q Consensus 217 -~~~~~~----------------------------~~----~h~------~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~ 257 (491)
.+.... .+ .+. ..+++++.++-|++.+.|...|.|-+|+++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 000000 00 112 568899999999999999999999999999
Q ss_pred CCeeeEEE---eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEe
Q 011216 258 ANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 258 ~~~~~~~~---~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~ 334 (491)
+|-....+ ..|.++|+.++.. .-++.+++++.+|.+++||.. ....+..+. -...++++..+.....++.+
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~----~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~ 552 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFK----KKVLKKSLR-LGSSITGIVYHRVSDLLAIA 552 (910)
T ss_pred cCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecC----Ccceeeeec-cCCCcceeeeeehhhhhhhh
Confidence 99888777 4899999999994 778899999999999999996 444444443 34567888888888899999
Q ss_pred eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEE
Q 011216 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
..|-.|+++|..+ .+.++.+.+|....+ ..+|||||++|+
T Consensus 553 ~ddf~I~vvD~~t----------------------------------~kvvR~f~gh~nrit------d~~FS~DgrWli 592 (910)
T KOG1539|consen 553 LDDFSIRVVDVVT----------------------------------RKVVREFWGHGNRIT------DMTFSPDGRWLI 592 (910)
T ss_pred cCceeEEEEEchh----------------------------------hhhhHHhhcccccee------eeEeCCCCcEEE
Confidence 9999999999987 366778888874433 337888999999
Q ss_pred EEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC-CcEEEecCC
Q 011216 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFP 470 (491)
Q Consensus 415 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D-g~i~iw~~~ 470 (491)
+++.|++|++||+.++.++-.+. -..+++++.|+|+|.+|||+..| .-|++|.-.
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 99999999999999999998775 56789999999999999999988 669999743
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-25 Score=195.35 Aligned_cols=316 Identities=17% Similarity=0.258 Sum_probs=225.5
Q ss_pred CCcchhHHHHHHhhcccCCcccccc-ccCCCCccccchhhhhhccccCCCCCCcccccccceecccccCCCCCccccCCC
Q 011216 46 PLSALDHEIAQLTKLKSEPKEHFSK-EVPGKRHLPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTT 124 (491)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 124 (491)
....|+...-.+++++..+.+.... .+.....++...+.+.+|. ++..++...+.. .....+.++--.
T Consensus 189 ~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~----d~~lrifqvDGk-------~N~~lqS~~l~~ 257 (514)
T KOG2055|consen 189 RSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGL----DGTLRIFQVDGK-------VNPKLQSIHLEK 257 (514)
T ss_pred ccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecC----CCcEEEEEecCc-------cChhheeeeecc
Confidence 3334555555555555544443322 2333444454444444443 333333332221 112234444557
Q ss_pred CceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCc-eeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 125 SRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
.+|.+.+|+|+|. .+++++....++.||+.+.+ +.++....++. ..+.....+|++++|+..+..|.|.+....+++
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeeccccc-cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 8999999999998 89999999999999998873 33333333332 357778899999999999999999999999998
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC-CeEEEEEecCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~i~~~~~~ 281 (491)
.+..+++.. .|..++|+.|++.|++.+.+|.|++||++...++.++....+ .-++++.+ .+
T Consensus 337 li~s~KieG-----------------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S-~n 398 (514)
T KOG2055|consen 337 LITSFKIEG-----------------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCIS-LN 398 (514)
T ss_pred hhheeeecc-----------------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeec-CC
Confidence 877766543 799999999999999999999999999999998888853221 23566766 78
Q ss_pred CCEEEEEeCCCeEEEEeCccc--cCCCcceeeeccccccEEEEEEcCCCCEEEEeeC--CCcEEEeeCCCCCCccccccC
Q 011216 282 GHLIYSGSDDNLCKVWDRRCL--NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~ 357 (491)
+.+||+|+..|.|.|||.... ....+++..+..-...|+++.|+||+++|+.++. +..+++-.+.+
T Consensus 399 g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS---------- 468 (514)
T KOG2055|consen 399 GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS---------- 468 (514)
T ss_pred CceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccc----------
Confidence 899999999999999996532 2355777788888899999999999999987764 56688877654
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
..+|..-....+.+..+.+++|||++.+||.|..+|.|.+|.+.
T Consensus 469 ---------------------------~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 ---------------------------CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ---------------------------eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 22222222223334455677899999999999999999999874
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.9e-25 Score=192.00 Aligned_cols=271 Identities=19% Similarity=0.259 Sum_probs=211.3
Q ss_pred CEEEEEEC-CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccc
Q 011216 137 SLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (491)
.+++++.. -..|.+|.+........... ..++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+....
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~------- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS------- 120 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH-------
Confidence 46666543 44788999987644442222 33479999999999999999899999999999999876653
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC---------CCeeeEEEeccCCCeEEEEEecC-CCCEE
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---------ANKLSLRILAHTSDVNTVCFGDE-SGHLI 285 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~i~~~~~-~~~~l 285 (491)
+|-..|+|+.|+-||.+|++|+.||.|.+|++. +-++...+..|.-+|+++...+. ....+
T Consensus 121 ---------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 121 ---------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred ---------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 355689999999999999999999999999873 34567788899999999988633 35689
Q ss_pred EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeec
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
+++|.|.++++||+. .+..+..+. ....+.+++.+|-++.+.+|+.+|.|.+.++......... +
T Consensus 192 ~TaS~D~t~k~wdlS----~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~----------v 256 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLS----LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG----------V 256 (476)
T ss_pred EEecCCceEEEEEec----cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccc----------c
Confidence 999999999999997 666665554 4577899999999999999999999999888764321100 0
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeee
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
.....+..+..+..+.||.....+. +.+++.||.+|++|+.||.|+|||+.+.++++++....++|+.
T Consensus 257 --------~~k~~~~~~t~~~~~~Gh~~~~~IT----cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 257 --------NQKGRHEENTQINVLVGHENESAIT----CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred --------cccccccccceeeeeccccCCccee----EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence 0122233456677788887643332 3356669999999999999999999999999988767889999
Q ss_pred eEecCCCC
Q 011216 446 CSWHPSQP 453 (491)
Q Consensus 446 ~~~s~~~~ 453 (491)
+.+.|-.+
T Consensus 325 L~i~~~~~ 332 (476)
T KOG0646|consen 325 LQINPLER 332 (476)
T ss_pred eEeecccc
Confidence 99976544
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.5e-25 Score=196.60 Aligned_cols=251 Identities=21% Similarity=0.309 Sum_probs=202.4
Q ss_pred CCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc-cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 167 ~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
.|..-|.++++|...+++.+|+ .|-|+|||+...... .+..+... .....|.++.+.|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl------------~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCL------------NRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccccccc------------CcccceeeeEecCCCceEEec
Confidence 5667888899999999999987 578999999754211 11111111 122368999999999999999
Q ss_pred ecCCeEEEEECCCCeeeEE--EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 246 SSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
+.-.++.|||+........ +....-....++.+ ++.++.+++..||.|.|||++ +...++.+++|.+.+.||.
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLh----nq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCID 558 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcc----cceeeecccCCCCCceeEE
Confidence 9999999999987655332 32333456678887 888999999999999999998 8889999999999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEec
Q 011216 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
+++||..|.+|+-|++|+.||++....... |. ....+|+
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqq-------------------------------------hd----F~SQIfS 597 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------------------------------------HD----FSSQIFS 597 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhh-------------------------------------hh----hhhhhee
Confidence 999999999999999999999998543322 11 1133477
Q ss_pred CcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCC
Q 011216 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 477 (491)
..++|++.+|++|-.++.+.+... ++.....+..|.+-|.++.|.+-|+++++.+.|..+..|..+-+.....
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq 670 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 670 (705)
T ss_pred cccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee
Confidence 788899999999999999999887 5566677778999999999999999999999999999999988765433
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.1e-24 Score=180.21 Aligned_cols=235 Identities=18% Similarity=0.307 Sum_probs=181.1
Q ss_pred cCCceeEEEeEeCC-CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEE
Q 011216 166 KSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELV 243 (491)
Q Consensus 166 ~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~ 243 (491)
..|.+.|+++...+ .|+++++|+.||.|.+||++.............+..+ .......+|+..|.++.|-| |..++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~-v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCI-VAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeee-ccccCCccceeeeeeeEEeeecCceee
Confidence 35667899999887 6799999999999999999865422111111111111 12233458999999999999 666889
Q ss_pred EEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCC--CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEE
Q 011216 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (491)
+++.|.+++|||..+.+....+ ...+.|.+-+++|-. .-++++|..|-.|++.|+. .+.....+.+|.+.|.+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----SGSFSHTLSGHRDGVLA 193 (397)
T ss_pred cccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc----CCcceeeeccccCceEE
Confidence 9999999999999998877666 446677777777432 3578888999999999998 88999999999999999
Q ss_pred EEEcCCCCE-EEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEE
Q 011216 322 IDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 322 i~~sp~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
+.|+|...+ |++|+.||.|++||++..
T Consensus 194 V~Wsp~~e~vLatgsaDg~irlWDiRra---------------------------------------------------- 221 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGAIRLWDIRRA---------------------------------------------------- 221 (397)
T ss_pred EEeccCceeEEEecCCCceEEEEEeecc----------------------------------------------------
Confidence 999998765 678999999999999861
Q ss_pred EecCcccCCCcEEEEEecCCeEEEEECCCccEE---EEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV---AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
.|..++.|..+++.. +.-..|.+.|..++|+.++.++++++.|..+++|+...+....
T Consensus 222 ------------------sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 222 ------------------SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ------------------cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 123344444433322 2234799999999999999999999999999999998876543
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=6.5e-25 Score=192.12 Aligned_cols=219 Identities=15% Similarity=0.210 Sum_probs=179.5
Q ss_pred CCCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeE----EEEEeeccCCceeEEEeEeCCC-CceEEEEe
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPD-QRHLVYAS 188 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~ 188 (491)
.+...|.+|+..-+.++|++... +|++|+.|++|++||+..... +.......+|...|.+++|+|- ...+++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 34568899999999999999654 799999999999999976432 4455667899999999999995 57888899
Q ss_pred cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCe-eeEEEe
Q 011216 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK-LSLRIL 266 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~ 266 (491)
.|+.+.|||+.++.. .... ...+|..+|.|++|+| ++..||+|+.|++|.+||+++.. ++..+.
T Consensus 248 dd~~L~iwD~R~~~~-~~~~-------------~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTS-KPSH-------------SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred CCCeEEEEEcCCCCC-CCcc-------------cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 999999999986411 1111 1236888999999999 66788999999999999998754 667888
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC----------CcceeeeccccccEEEEEEcCCCCE-EEEee
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK----------GKPAGVLMGHLEGITFIDSRGDGRY-LISNG 335 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~i~~i~~sp~~~~-l~~~~ 335 (491)
+|...|.++.|+|.....|++++.|+.+.+||+...... ...+....||...|..+.|+|+..+ |++.+
T Consensus 314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 999999999999999999999999999999999743321 2344566789999999999998765 66888
Q ss_pred CCCcEEEeeCCC
Q 011216 336 KDQAIKLWDIRK 347 (491)
Q Consensus 336 ~dg~i~iwd~~~ 347 (491)
.|+.+.||....
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999999874
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.4e-26 Score=211.61 Aligned_cols=256 Identities=25% Similarity=0.350 Sum_probs=214.3
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (491)
-+++..-..-.+++|+.... ..|...+.++..-..++.+++|+.|-.+.+|.+.....+..
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~---------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------- 65 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREF---------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------- 65 (825)
T ss_pred cccceeeeeeccccccchhh---------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----------
Confidence 34455555666778876542 34555677777767788999999999999998765443221
Q ss_pred ccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEE
Q 011216 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (491)
Q Consensus 217 ~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 296 (491)
..+|..+|.++.|+++..+|++|+.+|+|++||++..+.++.+.+|...+.++.|+ |-+.+++.|+.|+.+++
T Consensus 66 ------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~-P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 66 ------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFH-PYGEFFASGSTDTDLKI 138 (825)
T ss_pred ------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeec-cceEEecccccccccee
Confidence 23688899999999999999999999999999999999999999999999999998 77889999999999999
Q ss_pred EeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccc
Q 011216 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
||.+ ...+...+.+|...+..+.|+|+|++++.++.|..++|||+..
T Consensus 139 wD~R----k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a----------------------------- 185 (825)
T KOG0267|consen 139 WDIR----KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA----------------------------- 185 (825)
T ss_pred hhhh----ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc-----------------------------
Confidence 9998 7788889999999999999999999999999999999999987
Q ss_pred ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEE
Q 011216 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 456 (491)
+..+..|+.|.... .++.|.|..-+++.|+.|++|++||+++.+.+...+.....|.+++|+|++..++
T Consensus 186 -----gk~~~ef~~~e~~v------~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 186 -----GKLSKEFKSHEGKV------QSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred -----cccccccccccccc------cccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence 35566666665322 2234666788899999999999999999999988888889999999999999888
Q ss_pred EEECCC
Q 011216 457 SSSWDG 462 (491)
Q Consensus 457 s~~~Dg 462 (491)
+|..+.
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 876543
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.8e-23 Score=189.48 Aligned_cols=237 Identities=15% Similarity=0.174 Sum_probs=184.7
Q ss_pred ccccccccee-cccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeE
Q 011216 98 RFSAADCCHM-LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (491)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~ 176 (491)
-|+......+ -.+....++...++...+.|++++.+|.+..++.|++||.+..++...+........ ....+.|.+++
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l-~rq~sRvLsls 161 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL-MRQKSRVLSLS 161 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec-ccccceEEEEE
Confidence 4555444433 345556666777888899999999999999999999999888888887755444433 33456899999
Q ss_pred eCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 011216 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 177 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
|+|++..|+.|+.||.|++||+.++....+....- +++. .+-..-|+++.|-.++ .|++|...|+|.+||.
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~--d~l~------k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~ 232 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL--DRLS------KREPTIVWSVLFLRDS-TIASGDSAGTVTFWDS 232 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCceEEEeeecc--cccc------cCCceEEEEEEEeecC-cEEEecCCceEEEEcc
Confidence 99999999999999999999999887765222111 0000 0122258888888776 5999999999999999
Q ss_pred CCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC
Q 011216 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
..+..+..+..|.+.|.+++.. ++++.+++++.|+.|..+.................|...|.+++..++ .+++|+.
T Consensus 233 ~~gTLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~ 309 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR 309 (691)
T ss_pred cCcchhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence 9999999999999999999997 778899999999999988875332222244455678889999999877 8999999
Q ss_pred CCcEEEeeCCC
Q 011216 337 DQAIKLWDIRK 347 (491)
Q Consensus 337 dg~i~iwd~~~ 347 (491)
|..+.+-..+.
T Consensus 310 d~~l~i~~s~~ 320 (691)
T KOG2048|consen 310 DFTLAICSSRE 320 (691)
T ss_pred eeEEEEccccc
Confidence 99988876665
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1e-22 Score=180.37 Aligned_cols=285 Identities=17% Similarity=0.295 Sum_probs=212.3
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecc-CCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
.+..-...|...+|+|.+..|+.....|.+.+|+.+.+....+..... ..+..|.|++|.++|+ +++|..+|.|.||+
T Consensus 195 ~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 195 PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWS 273 (626)
T ss_pred cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEe
Confidence 444556778899999988766666677899999999885555443332 2336799999999997 67999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-----------------
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----------------- 260 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~----------------- 260 (491)
..+.+...... .|.+.|.+++.-.+|. |++|+.|..|..||-.-.+
T Consensus 274 ~~~~~~~k~~~----------------aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 274 KGTNRISKQVH----------------AHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CCCceEEeEee----------------ecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 86654432221 3777999999999997 5569999999999832110
Q ss_pred -----------------------eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc
Q 011216 261 -----------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 261 -----------------------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
......+|......++.+ ++.+++++++.|+.+++|+- .++..... -..
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v~lW~~------~k~~wt~~-~~d 408 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHVRLWND------HKLEWTKI-IED 408 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceEEEccC------CceeEEEE-ecC
Confidence 001223677788889987 67788999999999999992 23333222 347
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeee
Q 011216 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
++.++.|+|.| .++.|...|...+.|.++ +.+.+.+... ..+
T Consensus 409 ~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-----------------------------------~~lv~~~~d~--~~l 450 (626)
T KOG2106|consen 409 PAECADFHPSG-VVAVGTATGRWFVLDTET-----------------------------------QDLVTIHTDN--EQL 450 (626)
T ss_pred ceeEeeccCcc-eEEEeeccceEEEEeccc-----------------------------------ceeEEEEecC--Cce
Confidence 78899999999 999999999999999987 2222222222 111
Q ss_pred EEEEecCcccCCCcEEEEEecCCeEEEEECCCc-cEEEEec-CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
..+.|+|+|.+||.|+.|+.|+||.+... ....... .|..+|+.+.||+|+++|.+-+.|-.|..|....
T Consensus 451 ----s~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 451 ----SVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred ----EEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 22367889999999999999999998654 3333332 3448999999999999999999999999994433
No 136
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=5.5e-24 Score=195.27 Aligned_cols=319 Identities=14% Similarity=0.197 Sum_probs=230.8
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
.+.+|.+.|..++|+|.|.+|++.+.|-+-|+|-.- .....+....+.-|...++|++|-+....+++|..+..+++++
T Consensus 356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 457999999999999999999999999999998754 2233556666677888999999998777788888899999997
Q ss_pred CCCCccccc-----------------ccee------------ccccccc----c--c-----------------------
Q 011216 198 VGSGTMESL-----------------ANVT------------EIHDGLD----F--S----------------------- 219 (491)
Q Consensus 198 ~~~~~~~~~-----------------~~~~------------~~~~~~~----~--~----------------------- 219 (491)
....-.... ..++ +...+.. . +
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 542100000 0000 0000000 0 0
Q ss_pred --cCCCCCceecEEEEEEcCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 011216 220 --AADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 220 --~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg 292 (491)
.+...||...|++++.+|+++.+|+++.. ..|++|+..+......+.+|.-.|+.++|+ +++++|++.+.|.
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRDR 594 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRDR 594 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecCc
Confidence 00113899999999999999999998864 459999999988888899999999999998 8999999999999
Q ss_pred eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCC
Q 011216 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
++.+|...............+.|...|....|+|++.+++|++.|++|++|.......
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d---------------------- 652 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD---------------------- 652 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh----------------------
Confidence 9999997533222233344778999999999999999999999999999999876421
Q ss_pred CcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC-CcEEEEEecCCeEEEEECCC-------cc--E---EEEecCC
Q 011216 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVS-------GE--Q---VAALKYH 439 (491)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~-------~~--~---~~~~~~h 439 (491)
+.+..+........+....+.+...++ +..+++|-..|.|.+|.... +. . +....+|
T Consensus 653 ----------~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (764)
T KOG1063|consen 653 ----------KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGP 722 (764)
T ss_pred ----------hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccCh
Confidence 111111111111223333444444443 34788999999999999651 11 1 1112357
Q ss_pred CCCeeeeEecCCC----------CeEEEEECCCcEEEecCC
Q 011216 440 TSPVRDCSWHPSQ----------PMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 440 ~~~v~~~~~s~~~----------~~l~s~~~Dg~i~iw~~~ 470 (491)
.+.|+.+.|.|.. ..|++|+.|-.++++++.
T Consensus 723 ~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 723 DSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred HHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 7889999999852 257999999999999874
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-23 Score=189.73 Aligned_cols=282 Identities=15% Similarity=0.235 Sum_probs=219.4
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
.++|.++||+.+.+.||.+-.+|.|.||++..++.....+.. +....|.+++|++ +..|++.+.+|.|.-||+.+++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEecccCce
Confidence 588999999999999999999999999999998777766655 4556899999995 55678888999999999998876
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE--EEeccCCCeEEEEEecCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDES 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~i~~~~~~ 281 (491)
...... ..+.|++++.+|.+..++.|+.||.++.++...++... .+...++.|.+++|+ ++
T Consensus 103 ~~~~d~----------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~~ 165 (691)
T KOG2048|consen 103 KYNIDS----------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-PT 165 (691)
T ss_pred eEEecC----------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec-CC
Confidence 544332 22389999999999999999999988888888877653 333456899999998 88
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceee-------ecc-ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccc
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-------LMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~-~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (491)
+..+++|+.||.|++||.. .+..+.. +.. ...-|+++.+-.++ .|++|...|+|.+||...+.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~----~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT---- 236 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVK----SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT---- 236 (691)
T ss_pred ccEEEecccCceEEEEEcC----CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc----
Confidence 8889999999999999997 4444331 111 23347777777554 68999999999999988743
Q ss_pred cccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE-
Q 011216 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ- 432 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~- 432 (491)
.++.+..|.. -+++++.++++.++++++.|+.|.-|...+.+.
T Consensus 237 ------------------------------LiqS~~~h~a------dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~ 280 (691)
T KOG2048|consen 237 ------------------------------LIQSHSCHDA------DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE 280 (691)
T ss_pred ------------------------------hhhhhhhhhc------ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc
Confidence 3333333331 223445666889999999999999998766543
Q ss_pred ---EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 433 ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ---~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
......|...|.+++..++ .|++|+.|..+.+-....
T Consensus 281 wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 281 WVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 2233478889999999877 899999999998876655
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.4e-25 Score=186.90 Aligned_cols=262 Identities=18% Similarity=0.226 Sum_probs=199.3
Q ss_pred ccceecccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCc
Q 011216 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 182 (491)
|....++..-..+..+.+..|.+.|..++++. ..++++++|.+|+.|.++.. .... .... ..+..+.-+..+.
T Consensus 88 DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~t-ilg~---s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHT-ILGK---SVYLGIDHHRKNS 160 (433)
T ss_pred CceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-ccee-eecc---ccccccccccccc
Confidence 33344444445566788999999999999987 66889999999999998763 2222 2222 2466777777777
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCee
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
.+++++. .|.|||......+....... ..|.++.|+|.. ..|+++..|+.|.+||+.++.+
T Consensus 161 ~FaTcGe--~i~IWD~~R~~Pv~smswG~----------------Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 161 VFATCGE--QIDIWDEQRDNPVSSMSWGA----------------DSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred cccccCc--eeeecccccCCccceeecCC----------------CceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 7888875 59999987665544433221 168999999955 4677777999999999999998
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEE
Q 011216 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~ 341 (491)
+..+. -...-+.|+|+| +.-.|++|+.|..++.||++. -..++....+|...|..++|+|.|+.+++|+.|.+|+
T Consensus 223 l~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~---l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 223 LKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRN---LSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred cceee-eeccccceecCc-cccceeeccccccceehhhhh---hcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence 87763 344568899995 888899999999999999983 4567888899999999999999999999999999999
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCe
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 421 (491)
||..+.+..... +... -+.-+++..||.|.+|+++|+.|+.
T Consensus 298 If~~~~~~SRdi----------------------------------Yhtk-----RMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 298 IFPVNHGHSRDI----------------------------------YHTK-----RMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred EeecCCCcchhh----------------------------------hhHh-----hhheeeEEEEeccccEEEecCCCcc
Confidence 999987443211 1111 1233456678889999999999999
Q ss_pred EEEEECCCccEE
Q 011216 422 VYVYDLVSGEQV 433 (491)
Q Consensus 422 i~iwd~~~~~~~ 433 (491)
|++|.....+.+
T Consensus 339 vRlWka~Asekl 350 (433)
T KOG0268|consen 339 VRLWKAKASEKL 350 (433)
T ss_pred eeeeecchhhhc
Confidence 999997655443
No 139
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=201.87 Aligned_cols=208 Identities=16% Similarity=0.224 Sum_probs=173.9
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC-CCceEEEEecCCeE
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIV 193 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i 193 (491)
++...+.+|.+.|..+.||.++ +|++++.|.+|++|++....++.. -.|..-|+|++|+| |.+|+++|+-|+.|
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~----F~HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKV----FSHNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeE----EecCCeeEEEEecccCCCcEeecccccce
Confidence 4446778999999999999774 899999999999999998766654 35677899999999 77999999999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe-------
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL------- 266 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------- 266 (491)
+||++...++.....+.+ -|++++|.|||+..++|+.+|.+++|+....+......
T Consensus 435 RiWsI~d~~Vv~W~Dl~~-----------------lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 435 RLWSISDKKVVDWNDLRD-----------------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred EEeecCcCeeEeehhhhh-----------------hheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999999887755544332 69999999999999999999999999998887665432
Q ss_pred --ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc--EEEEEEcCCCCEEEEeeCCCcEEE
Q 011216 267 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLISNGKDQAIKL 342 (491)
Q Consensus 267 --~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~i~~sp~~~~l~~~~~dg~i~i 342 (491)
.|. .|+.+.|.|.+...+++.+.|..|+|+|.+ ....+..++++... -....|+.||++|++++.|..|++
T Consensus 498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~----~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGR----DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred cccCc-eeeeeEecCCCCCeEEEecCCCceEEEecc----chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 133 799999998777778889999999999997 66777777765432 345678899999999999999999
Q ss_pred eeCCCCC
Q 011216 343 WDIRKMS 349 (491)
Q Consensus 343 wd~~~~~ 349 (491)
|++....
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9986543
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=6.3e-24 Score=181.41 Aligned_cols=215 Identities=19% Similarity=0.282 Sum_probs=169.4
Q ss_pred cccCCCCceEEEEEcCCCC--EEEEEECCCeEEEEECCCC-------------eEEEEEeeccCCceeEEEeEeCCCC-c
Q 011216 119 PVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSPDQ-R 182 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~--~l~~~~~dg~i~vw~~~~~-------------~~~~~~~~~~~~~~~v~~l~~sp~~-~ 182 (491)
....|.+.++.+.-++-|+ +.|+=+..|.|.||++... .....+....+|...=+.|+|||-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 3456778888888777654 5556677899999998532 1222344556777788999999933 3
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCe-
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK- 260 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~- 260 (491)
.|++|..-+.|++|...++....- .....+|+..|..++|||. ...|++|+.||+|+|||++.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd-------------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVD-------------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ccccCccccceEeeeeccCceeec-------------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 478888888999999988765322 2233468889999999995 4589999999999999999873
Q ss_pred -eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEeeCCC
Q 011216 261 -LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQ 338 (491)
Q Consensus 261 -~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg 338 (491)
.......|.+.|+-|.|+ ....+|++|+.||+++|||+|... .++++..+.-|..+|++|.|+|. ...|++++.|.
T Consensus 293 ~~~~~~kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~-~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~ 370 (440)
T KOG0302|consen 293 KAAVSTKAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFK-SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN 370 (440)
T ss_pred cceeEeeccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhcc-CCCcceeEEeccCCeeEEEeccccCceEEeccCCC
Confidence 222337899999999998 555599999999999999999776 45889999999999999999995 56788899999
Q ss_pred cEEEeeCCCC
Q 011216 339 AIKLWDIRKM 348 (491)
Q Consensus 339 ~i~iwd~~~~ 348 (491)
+|.+||+...
T Consensus 371 QitiWDlsvE 380 (440)
T KOG0302|consen 371 QITIWDLSVE 380 (440)
T ss_pred cEEEEEeecc
Confidence 9999999763
No 141
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=2.2e-23 Score=179.94 Aligned_cols=328 Identities=19% Similarity=0.199 Sum_probs=212.2
Q ss_pred CCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC------eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 123 TTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 123 h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
...+|+.+.|.+++. .||+|+.|..|++|.+..+ ..+.-......|...|+++.|+|+|..|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 357899999999876 9999999999999998643 244445566788889999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
|....-...............-.......+|...|+.++|+|++.++++++.|..+++||+..+.....+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 98763111000000000000000111234688899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccC-----------------CCcceeeeccccc----cEEEEEEcCCCCEEEEe
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNV-----------------KGKPAGVLMGHLE----GITFIDSRGDGRYLISN 334 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------~~~~~~~~~~~~~----~i~~i~~sp~~~~l~~~ 334 (491)
+|. +-++++++-+.|...+.+++..... .+...+.+ |.+ -...++|+|+|.+|++.
T Consensus 172 awD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf--hDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 172 AWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF--HDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--ecCchhhhhhhcccCCCCcEEEcc
Confidence 996 7788999999888777766531100 00011111 111 13456889999988875
Q ss_pred eC----CCc-----EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 335 GK----DQA-----IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 335 ~~----dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
+. .+. .++++-.....+....+........+ .+......+..-.... ..+.+
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lav--------------r~~pVy~elrp~~~~~----~~~~l- 309 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAV--------------RFSPVYYELRPLSSEK----FLFVL- 309 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEE--------------EeeeeEEEeccccccc----ccccc-
Confidence 42 111 22332222111111100000000000 0000000010000000 01111
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccEEEEec-CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
|-+-.+|+++.+ .|++||.++..++.... -|-..|++++|++||..|+..+.||...+-.+...+..
T Consensus 310 --pyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 310 --PYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred --ccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 224455666655 59999999988887664 58889999999999999999999999888777665543
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6.8e-26 Score=208.63 Aligned_cols=201 Identities=28% Similarity=0.498 Sum_probs=183.6
Q ss_pred ceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC
Q 011216 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 226 h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 305 (491)
|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+ ....+|++|+.+|+|++||+. .
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~-~~E~LlaagsasgtiK~wDle----e 101 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFD-TSERLLAAGSASGTIKVWDLE----E 101 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecC-cchhhhcccccCCceeeeehh----h
Confidence 56678888887788899999999999999998888888899999999999997 788899999999999999998 8
Q ss_pred CcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCee
Q 011216 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.+.++.+.+|...+.++.|+|-+.+.+.|+.|..+++||++. ..+.
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----------------------------------~Gc~ 147 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----------------------------------KGCS 147 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----------------------------------cCce
Confidence 888999999999999999999999999999999999999996 3677
Q ss_pred EEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEE
Q 011216 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~ 465 (491)
..+++|.....++ .|+|+|++++.|+.|..++|||+..|+.+..|+.|.+.+..+.|+|..-++++|+.|++|+
T Consensus 148 ~~~~s~~~vv~~l------~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 148 HTYKSHTRVVDVL------RLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred eeecCCcceeEEE------eecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence 8888876444333 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC
Q 011216 466 RWEFPG 471 (491)
Q Consensus 466 iw~~~~ 471 (491)
+||+.+
T Consensus 222 f~dlet 227 (825)
T KOG0267|consen 222 FWDLET 227 (825)
T ss_pred eeccce
Confidence 999984
No 143
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=6.9e-24 Score=194.72 Aligned_cols=239 Identities=23% Similarity=0.295 Sum_probs=195.9
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEE-EEEcC-CCCE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFST-DGRE 241 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-i~~s~-~~~~ 241 (491)
...+|...|..+++.+.. .+++++.||++++|+-..++........ +|.+-|.. +++-+ ++-.
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~--------------~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE--------------GPKGFIANSICYAESDKGR 73 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc--------------cCcceeeccceeccccCcc
Confidence 446788788888876544 7889999999999998766654432221 23333444 67765 5556
Q ss_pred EEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEE
Q 011216 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 321 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 321 (491)
+++|+.|++|.+|...+..+...+.+|...|.|+... .++. +++||.|.++++|-. ++....+.+|...|++
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~-~~~~-~iSgSWD~TakvW~~------~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIG-EDGT-LISGSWDSTAKVWRI------GELVYSLQGHTASVWA 145 (745)
T ss_pred eEeecccceEEEEecCCCCchhhhhccccceeeeecC-CcCc-eEecccccceEEecc------hhhhcccCCcchheee
Confidence 9999999999999999999999999999999999975 5555 899999999999984 5666779999999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEE
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
++.-|++ .+++|+.|.+|++|.-. ..++++.+|......
T Consensus 146 v~~l~e~-~~vTgsaDKtIklWk~~------------------------------------~~l~tf~gHtD~VRg---- 184 (745)
T KOG0301|consen 146 VASLPEN-TYVTGSADKTIKLWKGG------------------------------------TLLKTFSGHTDCVRG---- 184 (745)
T ss_pred eeecCCC-cEEeccCcceeeeccCC------------------------------------chhhhhccchhheee----
Confidence 9999987 89999999999999863 577888898743322
Q ss_pred ecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 402 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.++- +...+++++.||.|++|++ +|+.+..+.+|.+-|.+++..+++..+++++.|++++||+..
T Consensus 185 --L~vl-~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 185 --LAVL-DDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred --eEEe-cCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 2222 3456889999999999999 899999999999999999988888899999999999999987
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=9e-24 Score=180.46 Aligned_cols=263 Identities=22% Similarity=0.267 Sum_probs=190.0
Q ss_pred cCCceeEEEeEeCCCC--ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCE
Q 011216 166 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 241 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~ 241 (491)
..|.+.++-+.-++-+ .+.++-+..|.|+||++...-......-...+....-+.....+|...-+.++||| .| .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence 4566677777766654 56666778899999998643111000000111111122233457888889999999 34 4
Q ss_pred EEEEecCCeEEEEECCCCeee---EEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc
Q 011216 242 LVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
|++|..-+.|++|...++... ..+.+|+..|-.++|+|.....|++||.||+|+|||+|... .+.....+.|...
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~--~~~~~~~kAh~sD 304 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP--KKAAVSTKAHNSD 304 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC--ccceeEeeccCCc
Confidence 888888889999999887653 24558999999999999899999999999999999999442 2233344889999
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
|+.|.|+.+..+||+|+.||+++|||+|..+. ++++..|+-|....+
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~-------------------------------~~pVA~fk~Hk~pIt-- 351 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKS-------------------------------GQPVATFKYHKAPIT-- 351 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccC-------------------------------CCcceeEEeccCCee--
Confidence 99999999888999999999999999998543 477888988884433
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECCCccE----------------EEEecCC--CCCeeeeEecCCCC-eEEEEE
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----------------VAALKYH--TSPVRDCSWHPSQP-MLVSSS 459 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----------------~~~~~~h--~~~v~~~~~s~~~~-~l~s~~ 459 (491)
...|+|. +...|++++.|..|.+||+..-.- ...+-.| +..|..+.|++.-+ +|++.+
T Consensus 352 sieW~p~---e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 352 SIEWHPH---EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred EEEeccc---cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 3445554 467888999999999999853210 1112224 35688999999876 888888
Q ss_pred CCCcEEEec
Q 011216 460 WDGDVVRWE 468 (491)
Q Consensus 460 ~Dg~i~iw~ 468 (491)
.|| +.||.
T Consensus 429 ~dG-fnVfk 436 (440)
T KOG0302|consen 429 IDG-FNVFK 436 (440)
T ss_pred ccc-eeEEE
Confidence 998 55554
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6.4e-25 Score=212.77 Aligned_cols=291 Identities=19% Similarity=0.331 Sum_probs=219.6
Q ss_pred EEEEEcCCCC-EEEEEE----------CCCeEEEEECCCCeEEE--EEeeccCCceeEEEeEeCCCCce----EEEEecC
Q 011216 128 YVSQFSADGS-LFVAGF----------QASQIRIYDVERGWKIQ--KDILAKSLRWTVTDTSLSPDQRH----LVYASMS 190 (491)
Q Consensus 128 ~~~~~s~dg~-~l~~~~----------~dg~i~vw~~~~~~~~~--~~~~~~~~~~~v~~l~~sp~~~~----l~~~~~d 190 (491)
-.++|||++. ++|+|. .+.++.||.+....... +...........+.++|.+.+.. |+.|..|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 3578999987 566543 24556666654321111 11111122336789999998765 8888999
Q ss_pred CeEEEEECCCC---ccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEEe
Q 011216 191 PIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 191 g~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
|.|.+||...- ....... ....|.+.|..+.|++.. +.|++|+.||.|.|||+...+......
T Consensus 90 G~I~ly~p~~~~~~~~~~~la-------------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~ 156 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLA-------------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG 156 (1049)
T ss_pred CceEEecchhhccCcchHHHh-------------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC
Confidence 99999998652 2222211 123578899999999955 499999999999999998866544442
Q ss_pred --ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc--cEEEEEEcCCC-CEEEEeeCCC---
Q 011216 267 --AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDG-RYLISNGKDQ--- 338 (491)
Q Consensus 267 --~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~i~~i~~sp~~-~~l~~~~~dg--- 338 (491)
...+.|.+++|+....++|++++.+|.+.|||+| ..+++..+..+.. .+..++|+|+. ..|++++.|.
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr----~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR----KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceecccc----CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 2457899999997778899999999999999999 6677766665554 47789999985 4466666554
Q ss_pred cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec
Q 011216 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 418 (491)
.|.+||+|... .+++++.+|. ..++...|++. |.++|++++.
T Consensus 233 viqlWDlR~as---------------------------------sP~k~~~~H~--~GilslsWc~~---D~~lllSsgk 274 (1049)
T KOG0307|consen 233 VIQLWDLRFAS---------------------------------SPLKILEGHQ--RGILSLSWCPQ---DPRLLLSSGK 274 (1049)
T ss_pred eeEeecccccC---------------------------------Cchhhhcccc--cceeeeccCCC---CchhhhcccC
Confidence 49999999743 5667777777 45556666665 6699999999
Q ss_pred CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCCC
Q 011216 419 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~ 473 (491)
|+.|.+|+.++++.+..+......+..+.|+|... .++.++.||.|.|+.+.+..
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999999999998888999999999888 88888999999999998766
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-24 Score=202.07 Aligned_cols=251 Identities=20% Similarity=0.323 Sum_probs=191.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCC
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg 249 (491)
...+|...++-..++.++. ..+.|+.+..........+..... ..-...+..+.|.. +.++|++++..|
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~k---------qn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTK---------QNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccc---------cceeeehhhcccccchhhhheeecCCC
Confidence 4566777788777777764 467777765543322222111000 00112466788875 567999999999
Q ss_pred eEEEEECCC---CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC
Q 011216 250 CIYVYDLEA---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 250 ~i~vwd~~~---~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp 326 (491)
.|.+||+.. .+.+..+..|...++++.|++...++|++|+.||+|++||+| ..+....+.+..+.|..|.|+|
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR----~~~S~~t~~~nSESiRDV~fsp 186 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR----SKKSKSTFRSNSESIRDVKFSP 186 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee----cccccccccccchhhhceeecc
Confidence 999999987 566677889999999999998899999999999999999999 7777778888889999999999
Q ss_pred -CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 327 -DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 327 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
.+..++++...|.+.+||+|... +....+..|.. .+++..
T Consensus 187 ~~~~~F~s~~dsG~lqlWDlRqp~---------------------------------r~~~k~~AH~G------pV~c~n 227 (839)
T KOG0269|consen 187 GYGNKFASIHDSGYLQLWDLRQPD---------------------------------RCEKKLTAHNG------PVLCLN 227 (839)
T ss_pred CCCceEEEecCCceEEEeeccCch---------------------------------hHHHHhhcccC------ceEEEe
Confidence 46789999999999999999743 55556666763 334457
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccE--EEEecCCCCCeeeeEecCCCC-eEEEEE--CCCcEEEecCCCCCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSS--WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~s~~~~-~l~s~~--~Dg~i~iw~~~~~~~~ 475 (491)
|+|++.+||+|+.|+.|+|||..+++. +.++. -..+|..|.|-|+.+ .|++++ .|-.|+|||+....-+
T Consensus 228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred ecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 888999999999999999999976543 33333 356899999999887 567665 5888999999876543
No 147
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=176.81 Aligned_cols=292 Identities=16% Similarity=0.216 Sum_probs=201.8
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC--CCceEEEEecCCeEEEEECCCCccccccceecccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
..+|++..+|.|++||..++..+... +++...++.+.|.. ....+.+|+.||+|++||+...............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 57899999999999999998665544 55555788888876 4578899999999999999887665544433211
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEEec----CCeEEEEECCCCee-eEEE-eccCCCeEEEEEecCCCCEEEEE
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLRI-LAHTSDVNTVCFGDESGHLIYSG 288 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~i~~~~~~~~~l~s~ 288 (491)
..+..+++.+..++.+++|.. +-.|.+||++..+. +..+ ..|.+.|+++.|+|.+.++|++|
T Consensus 117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 125677777767788888764 67899999998776 4444 37999999999999999999999
Q ss_pred eCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeecee
Q 011216 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 289 s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
|.||.|.+||+...+.. ..+.....|...|..+.|..++ +.|.+-+...+..+|+++.............
T Consensus 185 SvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~-------- 255 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV-------- 255 (376)
T ss_pred cccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc--------
Confidence 99999999999755433 3333444577889999999877 4577788889999999998653322211000
Q ss_pred ecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEEEEECC---C---ccEEEEecC-C
Q 011216 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLV---S---GEQVAALKY-H 439 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~---~---~~~~~~~~~-h 439 (491)
.............++.+.. + .+....+.++. -+...++-+. + .+.+..+.+ |
T Consensus 256 ----------------~~~d~r~~~~~dY~I~~~~-~---~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~ 315 (376)
T KOG1188|consen 256 ----------------SADDLRKEDNCDYVINEHS-P---GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH 315 (376)
T ss_pred ----------------hhhhHHhhhhhhheeeccc-C---CCcceEEEeccccCceeEEEeeecccccccCccccccCCc
Confidence 0000000000011111111 1 13344444443 4555555443 2 345566665 7
Q ss_pred CCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 440 ~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
..-|+++.|...+.++.|||.||.+.+|..+...
T Consensus 316 ~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da~ 349 (376)
T KOG1188|consen 316 EEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDAT 349 (376)
T ss_pred HHHHHHHhhhcccceeeccCCCceEEEEecCCcc
Confidence 7789999999899999999999999999965443
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=2.9e-22 Score=168.35 Aligned_cols=309 Identities=20% Similarity=0.270 Sum_probs=217.6
Q ss_pred ccccCCCCceEEEEEcC-----CCCEEEEEECCCeEEEEECCCCe--EEEEEeeccCCceeEEEeEeCCC----CceEEE
Q 011216 118 WPVDQTTSRAYVSQFSA-----DGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPD----QRHLVY 186 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-----dg~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~l~~sp~----~~~l~~ 186 (491)
.....|..+|+.++|.+ +-..+|+.+.+ .+.+|+..... .+.+......+......++|+-+ ..+||+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34467889999999985 22456666544 78888876543 22222333346667888888764 358999
Q ss_pred EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEE
Q 011216 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 265 (491)
++.-|.|+|.|+.+++...... +|...|..+.+.|+. +++++++.|..|++|++++..++..+
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~----------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYR----------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred ecceeEEEEEecchhhhcccee----------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 9999999999999887654433 688899999999954 78999999999999999999998877
Q ss_pred e---ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC--------------Cc-------cee---eecccccc
Q 011216 266 L---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--------------GK-------PAG---VLMGHLEG 318 (491)
Q Consensus 266 ~---~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------------~~-------~~~---~~~~~~~~ 318 (491)
. +|.+.|.++.|+ .++..|++++.|..+++|++...+.. .. ... .-.-|...
T Consensus 175 GG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred cccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 5 799999999998 88889999999999999998721110 00 000 11235566
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
|-|+.|- |.++++-+-++.|..|..-.......... ++ ..+...+..++-.......+
T Consensus 254 VDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vk--------------p~------es~~Ti~~~~~~~~c~iWfi 311 (385)
T KOG1034|consen 254 VDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVK--------------PP------ESATTILGEFDYPMCDIWFI 311 (385)
T ss_pred HHHHHHH--hhheeecccCceEEEEecchhhhhhhccC--------------CC------ccceeeeeEeccCccceEEE
Confidence 6666664 56899988999999998743221100000 00 00012233333333222333
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECCCccEE--EEec--CCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+. +|.|-++.||.|...|.|++||++..++. .++. .....|...+|+.|+.+|+...+|++|.-||.-
T Consensus 312 rf----~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 312 RF----AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EE----eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 33 34456899999999999999999887663 2222 124579999999999999999999999999853
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=182.05 Aligned_cols=249 Identities=19% Similarity=0.214 Sum_probs=186.3
Q ss_pred EEEEEcC-------CCCEEEEEECCCeEEEEECCCCeEEEEE------------------eeccCCceeEEEeEeCCCC-
Q 011216 128 YVSQFSA-------DGSLFVAGFQASQIRIYDVERGWKIQKD------------------ILAKSLRWTVTDTSLSPDQ- 181 (491)
Q Consensus 128 ~~~~~s~-------dg~~l~~~~~dg~i~vw~~~~~~~~~~~------------------~~~~~~~~~v~~l~~sp~~- 181 (491)
.|++|.. -|+|+|.|+.|..|.|||+.-...+... ....+|...|.+++|+..-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 3689999999999999998632111111 1123677788899998764
Q ss_pred ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCe
Q 011216 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
+.|++||.|.+|++||+.++++..... .|...|.++.|+| ....|++|+.|++|.+.|.+...
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 688899999999999999999876654 2566899999999 56789999999999999998643
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEeeCCCc
Q 011216 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQA 339 (491)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~ 339 (491)
.....-...+.|-.++|.|...+.+++++.||+|+-+|+| ..++++..+..|.++|.+|++++. ..++++++.|+.
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC---CCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 3333335578899999998888999999999999999999 345899999999999999999875 356889999999
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC-cEEEEEec
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSH 418 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~ 418 (491)
+++|++....... ...|...... .++.++.|+- -+++.|+.
T Consensus 398 Vklw~~~~~~~~~-----------------------------------v~~~~~~~~r---l~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 398 VKLWKFDVDSPKS-----------------------------------VKEHSFKLGR---LHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred EEEEeecCCCCcc-----------------------------------cccccccccc---eeecccCCCcceEEEecCc
Confidence 9999998633211 1111111111 1222333333 46778888
Q ss_pred CCeEEEEECCCccEE
Q 011216 419 DSCVYVYDLVSGEQV 433 (491)
Q Consensus 419 dg~i~iwd~~~~~~~ 433 (491)
.+.++|||+.+...+
T Consensus 440 k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 440 KAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEeecccChhH
Confidence 889999999776544
No 150
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.5e-23 Score=176.55 Aligned_cols=301 Identities=16% Similarity=0.140 Sum_probs=222.7
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EE--EEEeeccCCceeEEEeEeCCCCceEEEEecCCeE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~--~~--~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i 193 (491)
..+.+|.+-|.++.||.++++||+|+.|..+++|+++.-. +. ...+....|+..|.|++|...++.|.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4567999999999999999999999999999999986420 11 1112345677889999999999999999999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-ee--EEEeccCC
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILAHTS 270 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~--~~~~~~~~ 270 (491)
.+.|+++.+.+.+..... ..+.|+.+..+|..+.|++.+.++.|.+||..... .. ..+.....
T Consensus 130 I~HDiEt~qsi~V~~~~~--------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENN--------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred EeeecccceeeeeecccC--------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 999999988765554221 23479999999998899999999999999997655 21 11223445
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee---eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG---VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
....+.|+|....+|++.+..+-+.+||++.....--... .+......-.++.|+|+|..|++--....-.+||+-+
T Consensus 196 ~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 196 NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 6788999999999999999999999999983321111111 1111122235678999999998877766677888766
Q ss_pred CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc----ccceeeeeEEEEecCcccCCCcEEEEEecCCeEE
Q 011216 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 423 (491)
..+ .+..+. +.....++..++|. +..-+++|+.+-.|+
T Consensus 276 ~R~---------------------------------~V~k~D~N~~GY~N~~T~KS~~F~-----~D~~v~tGSD~~~i~ 317 (609)
T KOG4227|consen 276 QRC---------------------------------FVLKSDHNPNGYCNIKTIKSMTFI-----DDYTVATGSDHWGIH 317 (609)
T ss_pred ccc---------------------------------eeEeccCCCCcceeeeeeeeeeee-----cceeeeccCcccceE
Confidence 221 112222 22233444445444 344599999999999
Q ss_pred EEECCCc-----------------------cEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 424 VYDLVSG-----------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 424 iwd~~~~-----------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+|.+... +.+..+++|.+-++.+.|+|...+|++.+....+++|.-.
T Consensus 318 ~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 318 IWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 9987521 1345678999999999999999999999999999999753
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.3e-21 Score=179.72 Aligned_cols=257 Identities=17% Similarity=0.164 Sum_probs=180.4
Q ss_pred CceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEEEEECCCCc
Q 011216 125 SRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~iwd~~~~~ 202 (491)
..+.+++|+|+|+.+ ++++.++.|++||..+++...... .+. .+..++|+|+++.++++ +.++.|++||+.+++
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 346789999999976 566788999999999875544322 222 35678999999977665 468999999998765
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC-eEEEEECCCCeeeEEEeccCCCeEEEEEecCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (491)
....... ...+.+++|+|++++++++..++ .+.+||..+++....+. ....+.+++|+ ++
T Consensus 107 ~~~~~~~-----------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s-~d 167 (300)
T TIGR03866 107 VLAEIPV-----------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFT-AD 167 (300)
T ss_pred EEeEeeC-----------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEEC-CC
Confidence 4332211 01457799999999999888765 57778998887765543 23456789998 67
Q ss_pred CCEEE-EEeCCCeEEEEeCccccCCCcceeeecccc-------ccEEEEEEcCCCCEEEE-eeCCCcEEEeeCCCCCCcc
Q 011216 282 GHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 282 ~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~i~~i~~sp~~~~l~~-~~~dg~i~iwd~~~~~~~~ 352 (491)
+++|+ ++..++.|++||+. .++.+..+..+. .....++|+|+++++++ .+.++.+.+||+++..
T Consensus 168 g~~l~~~~~~~~~v~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~--- 240 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVA----TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE--- 240 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcC----cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc---
Confidence 77665 55569999999997 444444332211 12346889999998654 4556789999987632
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECCCcc
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~ 431 (491)
.+..+... ...+++.|+|+|++|++++ .+|.|.+||+.+++
T Consensus 241 -------------------------------~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 241 -------------------------------VLDYLLVG-------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -------------------------------EEEEEEeC-------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 22221111 1123456888999998874 58999999999999
Q ss_pred EEEEecCCCCCeeeeEecC
Q 011216 432 QVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 432 ~~~~~~~h~~~v~~~~~s~ 450 (491)
.+..++.. ...+.++++|
T Consensus 283 ~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 283 VIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEEEEcc-cccceeEeCC
Confidence 99999754 5558888875
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.4e-22 Score=175.44 Aligned_cols=303 Identities=15% Similarity=0.177 Sum_probs=207.8
Q ss_pred eEEEEEcCCCCEEEEEECCC-----eEEEEECCC-CeEEEEEeeccCCceeEEEeEeCC-------CCceEEEEecCCeE
Q 011216 127 AYVSQFSADGSLFVAGFQAS-----QIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-------DQRHLVYASMSPIV 193 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg-----~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp-------~~~~l~~~~~dg~i 193 (491)
.-.+..-|+.++++++-.+. .|+||+-.. ...++.-..... ...|++|.. .|+++|.|+.|..|
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpa---fPLC~ewld~~~~~~~~gNyvAiGtmdp~I 204 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPA---FPLCIEWLDHGSKSGGAGNYVAIGTMDPEI 204 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccC---cchhhhhhhcCCCCCCCcceEEEeccCcee
Confidence 34566777777777664322 356666543 222222222222 345666643 25799999999999
Q ss_pred EEEECCCCcc-ccccceec----cccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEEec
Q 011216 194 HIVDVGSGTM-ESLANVTE----IHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 194 ~iwd~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
.|||+.--.. .....+.. .............+|+..|.+++|+..- +.|++|+.|.+|.+||+.++++...+..
T Consensus 205 eIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~ 284 (463)
T KOG0270|consen 205 EIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH 284 (463)
T ss_pred EEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh
Confidence 9999863221 11111110 0000111223345799999999998754 5789999999999999999999999989
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-CEEEEeeCCCcEEEeeCC
Q 011216 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd~~ 346 (491)
|.+.|.++.|+|.....|++|+.|++|.+.|.|.....+. .+ .-.+.|-.++|.|.. ..++++..||+|+-+|+|
T Consensus 285 ~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~---~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 285 HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK---EW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc---eE-EeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 9999999999999999999999999999999984221211 12 234678889999864 467788899999999999
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
... +++.+++.|......+ .++.. ...++++++.|+.|++|+
T Consensus 361 ~~~---------------------------------~~vwt~~AHd~~ISgl--~~n~~---~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 361 NPG---------------------------------KPVWTLKAHDDEISGL--SVNIQ---TPGLLSTASTDKVVKLWK 402 (463)
T ss_pred CCC---------------------------------CceeEEEeccCCcceE--EecCC---CCcceeeccccceEEEEe
Confidence 843 6778888887543333 23322 356899999999999999
Q ss_pred CCCccE--EEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCCCC
Q 011216 427 LVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 427 ~~~~~~--~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+..-.+ +..-...-+...|.++.|+-. .|+.|+..+.++|||+.....
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 865433 221111123466777777766 677888888899999987643
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.4e-22 Score=176.01 Aligned_cols=264 Identities=15% Similarity=0.171 Sum_probs=197.0
Q ss_pred CceEEEEEcCCCCEEEEE--ECCCeEEEEECCCCe-EEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 125 SRAYVSQFSADGSLFVAG--FQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~--~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
-.++.+.|+.... |+++ +.|..+++|.-.... .+.......+. .-.|++......|+++|+..+.|+|||+...
T Consensus 35 pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 35 PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred Ccceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHH
Confidence 3489999987764 4443 467889999765431 11111111111 3345555555689999999999999999854
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc-CCCeEEEEEecC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~ 280 (491)
.+.+..+ +|...|+++.++....+|++++..|.|.|..+.++.....+... ...|.-+.|++.
T Consensus 112 l~hr~lk----------------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s 175 (673)
T KOG4378|consen 112 LIHRFLK----------------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS 175 (673)
T ss_pred HHhhhcc----------------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence 4433322 57789999999999999999999999999999998877777544 345668999988
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcce-eeeccccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccccCc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
...+|.+++.+|.|.+||+. ...++ .-...|..+...|+|+|. ..+|++.+.|..|.+||++.....
T Consensus 176 kr~lL~~asd~G~VtlwDv~----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~------- 244 (673)
T KOG4378|consen 176 KRFLLSIASDKGAVTLWDVQ----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST------- 244 (673)
T ss_pred cceeeEeeccCCeEEEEecc----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-------
Confidence 88889999999999999996 33333 334679999999999995 567889999999999999863221
Q ss_pred ccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-cEEEEec
Q 011216 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALK 437 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~ 437 (491)
..+.... .....+|+++|.+|++|+..|.|+.||++.. .++..+.
T Consensus 245 ---------------------------~~l~y~~-------Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s 290 (673)
T KOG4378|consen 245 ---------------------------DRLTYSH-------PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS 290 (673)
T ss_pred ---------------------------ceeeecC-------CcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence 1111111 1123478889999999999999999999864 5788899
Q ss_pred CCCCCeeeeEecCCC
Q 011216 438 YHTSPVRDCSWHPSQ 452 (491)
Q Consensus 438 ~h~~~v~~~~~s~~~ 452 (491)
.|...|++++|-|.-
T Consensus 291 ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 291 AHDASVTRVAFQPSP 305 (673)
T ss_pred ecccceeEEEeeecc
Confidence 999999999998764
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=6.5e-23 Score=167.10 Aligned_cols=299 Identities=16% Similarity=0.205 Sum_probs=204.0
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC
Q 011216 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg 191 (491)
+|..+.+.+..|.+.|+++.|..+++ |.+|..-|.|.+|++.+....... ...+...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~--r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLI--RLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhh--hhhccceeeceeecCC-cchhhcCCCc
Confidence 35667788899999999999998876 889999999999999986333221 1245567888988887 5678889999
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-----CCC----EEEEEecCC-eEEEEECCCCee
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGR----ELVAGSSDD-CIYVYDLEANKL 261 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~----~l~~~~~dg-~i~vwd~~~~~~ 261 (491)
.+.+|++..+.......+ .+.++.|.+ +++ .++.-++.. .+.+-|......
T Consensus 78 ~L~lw~ia~s~~i~i~Si-------------------~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tq 138 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSI-------------------VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQ 138 (323)
T ss_pred eEEEEEccCcceEEEeee-------------------eccccccccceeccCCCcchhheecCCcccchhhhhccCccce
Confidence 999999987665444332 333333332 111 111111100 022222222222
Q ss_pred eEEE----eccCCCeEEEEEecCCC--CEEEEEeCCCeEEEEeCcccc------CCCcceeeeccccccEEEEEEcCCCC
Q 011216 262 SLRI----LAHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLN------VKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 262 ~~~~----~~~~~~v~~i~~~~~~~--~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~i~~i~~sp~~~ 329 (491)
+... .+..+.+.|..+--..+ -++++|.++|.+.+||+.... ...+.......|..+|.++.+.+.-.
T Consensus 139 v~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~ 218 (323)
T KOG0322|consen 139 VQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD 218 (323)
T ss_pred eEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc
Confidence 2111 13345677776532222 356788899999999997321 11234445567999999999988666
Q ss_pred EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC
Q 011216 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
.=++|+.+..+..|.+......... .....++... .....+-||
T Consensus 219 rGisgga~dkl~~~Sl~~s~gslq~----------------------------~~e~~lknpG--------v~gvrIRpD 262 (323)
T KOG0322|consen 219 RGISGGADDKLVMYSLNHSTGSLQI----------------------------RKEITLKNPG--------VSGVRIRPD 262 (323)
T ss_pred CCcCCCccccceeeeeccccCcccc----------------------------cceEEecCCC--------ccceEEccC
Confidence 6778888889999998763211110 1111111111 112245569
Q ss_pred CcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 410 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
++.+|+++.|+.|+||..++..+++.++.|.+.|++++|+|+..++|+++.|+.|.+|++
T Consensus 263 ~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 263 GKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999999999986
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=6.3e-22 Score=180.08 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=100.4
Q ss_pred CccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE--E-EEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 117 PWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWK--I-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~--~-~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
.-.+.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+.. + .......+..-.|.++.|+|...-|+..+..|.
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 346789999999999999 345899999999999999985521 1 111222334457889999998877777778899
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~ 258 (491)
++|||+.+++..... .+|...|.++.|+.||..|++++.|..|+|||.+.
T Consensus 152 v~i~D~stqk~~~el----------------~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 152 VYITDISTQKTAVEL----------------SGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEEEEcccCceeecc----------------cCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999988754322 26888999999999999999999999999999753
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=8.6e-22 Score=180.24 Aligned_cols=277 Identities=16% Similarity=0.153 Sum_probs=210.7
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccc
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (491)
.|+.++|-|||..|+.+.. ..+.+||.+.|..++ ..++|...|++++|+.||+.+++|+.|..|.+|+-.-....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 7999999999998887754 479999999985544 55899999999999999999999999999999985432221
Q ss_pred ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEE
Q 011216 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (491)
+ ..|.+.|.|+.|+|-...|++++-+. .-+|..+....... .....+.+.+|. .+|+++
T Consensus 89 --k---------------YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K~--kss~R~~~CsWt-nDGqyl 147 (1081)
T KOG1538|consen 89 --K---------------YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSKH--KSSSRIICCSWT-NDGQYL 147 (1081)
T ss_pred --e---------------eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHhh--hhheeEEEeeec-CCCcEE
Confidence 1 13777999999999888899887553 67888766543221 234578899997 999999
Q ss_pred EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-----CEEEEeeCCCcEEEeeCCCCCCccccccCccc
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
+.|-.+|+|.+-+-. ......+....+..++|.+++|+|.. ..+++.....++.++.+....
T Consensus 148 alG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~----------- 214 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ----------- 214 (1081)
T ss_pred EEeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-----------
Confidence 999999999998652 11122233344578899999999963 467777777778777776411
Q ss_pred ceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC
Q 011216 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
+-.-+ ++.--..+..|-++|.+++.|+.|+.+.+|.. .|-.+.++-...
T Consensus 215 ------------------------Igk~r------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 215 ------------------------IGKDR------ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD 263 (1081)
T ss_pred ------------------------ecccc------cCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc
Confidence 11000 00000123356779999999999999999974 677788877778
Q ss_pred CCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 441 ~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
..|+.++..|++++++.|+.||+|..|++...
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred eeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 89999999999999999999999999997543
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=5.8e-22 Score=180.50 Aligned_cols=264 Identities=22% Similarity=0.310 Sum_probs=182.4
Q ss_pred EeEeCC---CCceEEEEecCCeEEEEECCCCccc-cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 174 DTSLSP---DQRHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 174 ~l~~sp---~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
+..|++ ....|+.+.+||.|.++|....... ....+ .....|...|.++.|-|....|++++.|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~l-----------k~~~aH~nAifDl~wapge~~lVsasGDs 122 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQL-----------KKPLAHKNAIFDLKWAPGESLLVSASGDS 122 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhh-----------cccccccceeEeeccCCCceeEEEccCCc
Confidence 345654 3468888999999999998754432 00000 11125788999999999767899999999
Q ss_pred eEEEEECCCCeeeEE--EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC--------------C-------
Q 011216 250 CIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--------------G------- 306 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------------~------- 306 (491)
++++||+++.++... +.+|.+.|.+++|.+.+...|++|+.||.|.|||+++.... +
T Consensus 123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 999999999988776 78999999999999999999999999999999999843210 0
Q ss_pred --cceeeeccccccEEE---EEEcCCCCEEEEeeC-CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCC
Q 011216 307 --KPAGVLMGHLEGITF---IDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 307 --~~~~~~~~~~~~i~~---i~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
+.+.....+...|.+ +.+..|...||+++. |+.|+|||+++.........
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep------------------------ 258 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP------------------------ 258 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC------------------------
Confidence 111222334444555 556668889998887 99999999998654332211
Q ss_pred CCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc--EEEEecCCCCC--eeeeEecCCCCeEE
Q 011216 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSP--VRDCSWHPSQPMLV 456 (491)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--~~~~~~~h~~~--v~~~~~s~~~~~l~ 456 (491)
.....+..+. ... ....+...+..|.+|++.+.|+.|++|++.+.. ++..+.++... -..-..+||+.+|+
T Consensus 259 --~~~~~~~t~s--krs-~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 259 --RGSDKYPTHS--KRS-VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred --CcccCccCcc--cce-eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 0111111110 000 011122233357899998999999999997643 44555444321 12235689999999
Q ss_pred EEECCCcEEEecCCCCCCCCC
Q 011216 457 SSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 457 s~~~Dg~i~iw~~~~~~~~~~ 477 (491)
+|+.|...++|.+......+.
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~ 354 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPA 354 (720)
T ss_pred ccCCCcceeeeeecCccCChh
Confidence 999999999999998766544
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.1e-23 Score=198.73 Aligned_cols=255 Identities=18% Similarity=0.264 Sum_probs=197.7
Q ss_pred cCCCCceEEEEEcCCCCE----EEEEECCCeEEEEECCC---CeEEEEEeeccCCceeEEEeEeCCCCc-eEEEEecCCe
Q 011216 121 DQTTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPI 192 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~----l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~dg~ 192 (491)
..-..+.+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++.+. .|++|+.||.
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence 344677899999998876 88889999999999876 334444556678999999999999765 9999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEEeccCC-
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTS- 270 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~- 270 (491)
|.|||+...+........ .....|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+.+
T Consensus 141 I~iWDlnn~~tP~~~~~~--------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~ 206 (1049)
T KOG0307|consen 141 ILIWDLNKPETPFTPGSQ--------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR 206 (1049)
T ss_pred EEEeccCCcCCCCCCCCC--------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc
Confidence 999999874432222100 12237999999974 45788889999999999999988877765544
Q ss_pred -CeEEEEEecCCCCEEEEEeCCC---eEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-CEEEEeeCCCcEEEeeC
Q 011216 271 -DVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDI 345 (491)
Q Consensus 271 -~v~~i~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd~ 345 (491)
.+..++|+|.+...+++++.|. .|.+||+| ....+++.+.+|..+|.++.|++.+ .+|++++.|+.|.+|+.
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeeccc---ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC
Confidence 5788999988888888887764 69999998 3556778889999999999999966 88999999999999999
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 425 (491)
++.+ .+..+.... ..+....|++. +...+++++.||.|-||
T Consensus 284 ~tgE----------------------------------vl~~~p~~~--nW~fdv~w~pr---~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 284 NTGE----------------------------------VLGELPAQG--NWCFDVQWCPR---NPSVMAAASFDGKISIY 324 (1049)
T ss_pred CCce----------------------------------EeeecCCCC--cceeeeeecCC---Ccchhhhheeccceeee
Confidence 9843 333333322 23344555554 45689999999999999
Q ss_pred ECCCcc
Q 011216 426 DLVSGE 431 (491)
Q Consensus 426 d~~~~~ 431 (491)
.+....
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 987654
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-21 Score=173.42 Aligned_cols=272 Identities=15% Similarity=0.239 Sum_probs=194.7
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE--ecCCeEEEEECCCCccccccceeccccccccccCC
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
...+++||+................ .+.++.|+.... |+++ +.|..+++|.-... ...+..+.. ..
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k-~~-------- 78 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TPEVPRVRK-LT-------- 78 (673)
T ss_pred CCceEEeecccccCccccccCCCCC-cceeeeccccce-EEEeecCCceeEEEecccCC-CCccceeec-cc--------
Confidence 3479999987653333333222222 489999987664 5544 45678888875432 211111111 00
Q ss_pred CCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccc
Q 011216 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 302 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~ 302 (491)
+. .-.|++......++++|+..++|+|||++...+.+.+.+|...|+++.++ ..+.+|++++..|.|.|..+.
T Consensus 79 --gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~-- 151 (673)
T KOG4378|consen 79 --GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTK-- 151 (673)
T ss_pred --cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecc--
Confidence 01 33455555556899999999999999999877888889999999999998 778899999999999999986
Q ss_pred cCCCcceeeeccc-cccEEEEEEcCCCCE-EEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCC
Q 011216 303 NVKGKPAGVLMGH-LEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 303 ~~~~~~~~~~~~~-~~~i~~i~~sp~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
.+.....+... ...|.-+.|+|..++ |.+++.+|.|.+||+..+.....
T Consensus 152 --t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--------------------------- 202 (673)
T KOG4378|consen 152 --TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--------------------------- 202 (673)
T ss_pred --cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---------------------------
Confidence 44444445433 344668999998765 45788899999999987543221
Q ss_pred CCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEEC
Q 011216 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 460 (491)
-.+.|. .+....+|+|. +..+|++.+.|..|++||+.+.+....+. ...+...++|+++|.+|+.|..
T Consensus 203 ------~~~~Hs--AP~~gicfsps---ne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 203 ------ASEAHS--APCRGICFSPS---NEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred ------hhhhcc--CCcCcceecCC---ccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecC
Confidence 112333 22334455555 67788999999999999998877776665 4568999999999999999999
Q ss_pred CCcEEEecCCCCCCCC
Q 011216 461 DGDVVRWEFPGNGEAA 476 (491)
Q Consensus 461 Dg~i~iw~~~~~~~~~ 476 (491)
.|.|..||++....+.
T Consensus 271 ~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPV 286 (673)
T ss_pred CceEEEEecccCCCCc
Confidence 9999999999876543
No 160
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=162.91 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=157.2
Q ss_pred CCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee--EEE--eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEe
Q 011216 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~--~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd 298 (491)
..+|...|++++|+.||++|++++.|+.|++|+++.-... +.+ .-.-+..+.+.|.|.....+++.-...++++|.
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 4579999999999999999999999999999999763211 111 111235688999966666777777788999998
Q ss_pred CccccCCCcc---------eeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeec
Q 011216 299 RRCLNVKGKP---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 369 (491)
Q Consensus 299 ~~~~~~~~~~---------~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
+..... +.. ..--..|.-.+..+-...++++|++++.|..|.+|+++.
T Consensus 162 ~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG---------------------- 218 (420)
T KOG2096|consen 162 LVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG---------------------- 218 (420)
T ss_pred eeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC----------------------
Confidence 752221 111 111123555677777788899999999999999999984
Q ss_pred CCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC---Cc-----cEEEEecCCCC
Q 011216 370 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV---SG-----EQVAALKYHTS 441 (491)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~---~~-----~~~~~~~~h~~ 441 (491)
+.+..+...... .+..+.||+|++|++++.--.|++|.+- .| ..+..+++|.+
T Consensus 219 -------------q~L~~idtnq~~------n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s 279 (420)
T KOG2096|consen 219 -------------QLLQSIDTNQSS------NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS 279 (420)
T ss_pred -------------ceeeeecccccc------ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh
Confidence 444444433311 1334788999999999999899999863 22 34677899999
Q ss_pred CeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 442 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 442 ~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.|..++|+|+...++|.+.||++++||.+-..
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 99999999999999999999999999987543
No 161
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.5e-21 Score=171.22 Aligned_cols=225 Identities=14% Similarity=0.258 Sum_probs=163.3
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC--CCceEEEEecCCe
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPI 192 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~dg~ 192 (491)
.....|.+|++-|+|++|+.||.+|++|++|-.+.|||.-..+.+.. ...+|...|.++.|-| +.+.+++|+.|..
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcce
Confidence 33567899999999999999999999999999999999986655544 3467888999999999 4578999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeee---------
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLS--------- 262 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~--------- 262 (491)
|+++|+...+.... ..+.......-..|...|..++-.|++ ..+.++++||+|+-+|++.....
T Consensus 119 i~lfdl~~~~~~~~------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGM------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEeccccccccc------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 99999975332111 111112222233577789999999988 78999999999999999763211
Q ss_pred -EEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc----CCC----------cceeee-cccc----------
Q 011216 263 -LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----VKG----------KPAGVL-MGHL---------- 316 (491)
Q Consensus 263 -~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~----------~~~~~~-~~~~---------- 316 (491)
..+...--...|+..+|.+..+|++|+.|-..++||.|..- ..+ .++..+ .+|.
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY 272 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence 11111223467899999999999999999999999954110 000 112111 1121
Q ss_pred -ccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 317 -EGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 317 -~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
..++.+.|+|+|..|++.-....|+++|+..
T Consensus 273 ~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred eeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 1256788999998887776666799998876
No 162
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=3.5e-21 Score=159.11 Aligned_cols=285 Identities=18% Similarity=0.268 Sum_probs=199.2
Q ss_pred cccCCCCceEEEEEcCCC-CEEEEEECC-------CeEEEEECCCCeEEEEE------e-eccCCceeEEEeEeCCCCce
Q 011216 119 PVDQTTSRAYVSQFSADG-SLFVAGFQA-------SQIRIYDVERGWKIQKD------I-LAKSLRWTVTDTSLSPDQRH 183 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg-~~l~~~~~d-------g~i~vw~~~~~~~~~~~------~-~~~~~~~~v~~l~~sp~~~~ 183 (491)
.+..|.+.|..++-+|-. +.|+++..+ -.+-||.+......... . ....+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 456788999999999954 566666542 24789998764222110 0 11133347999999999998
Q ss_pred EEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCEEEEEecCCeEEEEECCCCee
Q 011216 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
|++.. |..|.+|+++.+..+ ...+.. ....+|....++-+|+| +|+.+++. .|+++..||+++.+.
T Consensus 138 lasm~-dn~i~l~~l~ess~~-vaev~s---------s~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~ 205 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKI-VAEVLS---------SESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK 205 (370)
T ss_pred eEEec-cCceEEEEcccCcch-heeecc---------cccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh
Confidence 88776 889999999877653 111111 01112455788899999 77777665 588999999998877
Q ss_pred eEEEe-ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEeeCCCc
Q 011216 262 SLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQA 339 (491)
Q Consensus 262 ~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~ 339 (491)
...+. .|...|..+.|+|....+|++|+.||.|++||.| ....++..+.+|...|.++.|+|. .++|++++.|..
T Consensus 206 ~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 206 NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---CCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 66654 6888899999998888899999999999999998 456788999999999999999995 567889999999
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
|.+|............... .......+. ..
T Consensus 283 V~Lsca~svSSE~qi~~~~-------------------------dese~e~~d-------------------------se 312 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFED-------------------------DESESEDED-------------------------SE 312 (370)
T ss_pred eEEEecccccccccccccc-------------------------ccccCcchh-------------------------hH
Confidence 9999877643222110000 000000000 00
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~ 471 (491)
-.++ -+ ....+.++..|...|.+++||.-.+ .+|+-+.||.+.|=+++.
T Consensus 313 er~k--pL-~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 313 ERVK--PL-QDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred Hhcc--cc-cccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0011 11 1123456678999999999998777 677889999999877654
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.3e-20 Score=181.02 Aligned_cols=308 Identities=20% Similarity=0.228 Sum_probs=215.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC--CCceEEEEecCCeEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
..+-..+.|+|-...++++...-.|+|||.+.+..+............|+.+.+-. |..++++|+.||.|+||+-...
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 34567789999999999998778999999999877666554444555799998865 4478999999999999985332
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe-ccCCCeEEEEEecC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~ 280 (491)
.. ....+.....++.-... +-.+.-.-+.|.....+|++++.-..|+|||......+..+. +....|+++.-...
T Consensus 1144 ~~-~~~eLVTaw~~Ls~~~~---~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1144 KW-KKPELVTAWSSLSDQLP---GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cc-CCceeEEeeccccccCc---cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 11 01111111111100000 001111346787766677777778899999999888777665 44567888877666
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc--EEEEEEcCCCC-EEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~i~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
.++++++|-.||.|++||.|... ....+.....|... |..+.+.+.|- .|++|+.||.|++||++......
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~-~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~----- 1293 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAP-PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET----- 1293 (1387)
T ss_pred CCceEEEeecCCceEEeecccCC-ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-----
Confidence 78999999999999999998654 33567778888877 99999988764 49999999999999999842111
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 437 (491)
..+...|..... ...++...++...+|+|+. +.|.||++ .|+.+..++
T Consensus 1294 ---------------------------~~~iv~~~~yGs---~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k 1341 (1387)
T KOG1517|consen 1294 ---------------------------FLTIVAHWEYGS---ALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIK 1341 (1387)
T ss_pred ---------------------------cceeeeccccCc---cceeeeeccCCCeeeecCc-ceEEEEec-Chhhhcccc
Confidence 111111110000 0122234456789999998 99999998 566665554
Q ss_pred CC-------CCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 438 YH-------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 438 ~h-------~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+ .+.+.+++|+|..-+||+|+.|.+|.||....+.
T Consensus 1342 ~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1342 YNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 32 3578999999999999999999999999877654
No 164
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.1e-20 Score=147.16 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=192.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCC-------eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..|++-+++|.+++|++|..+|.|-+..+.+- ...........|.++|+.++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 45677799999999999999999999998642 1112233447899999999997 45666665 59999998
Q ss_pred CCCCcc-ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 198 VGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 198 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
...... .....+.+......... -.--.|.++...|..+-++.++.|+.++-||+++|+..+.+++|++.|.++.
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~----~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDA----VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCc----ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 754322 11111111111100000 0011588999999777777778999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc---------cc-ccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------HL-EGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------~~-~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
-- .....+++|+.||++++||.+ +.+.+..+.. |. ..|-+++.+ ..+|++|+ ...+.+|.++
T Consensus 164 ~R-~~~~qilsG~EDGtvRvWd~k----t~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLr 235 (325)
T KOG0649|consen 164 GR-NANGQILSGAEDGTVRVWDTK----TQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLR 235 (325)
T ss_pred ec-ccCcceeecCCCccEEEEecc----ccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEecc
Confidence 84 455578899999999999998 5555554432 22 235556554 44777665 4569999999
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
...+ ..+..+.++..... | ..+.+++++..+.|.-|.
T Consensus 236 sse~--------------------------------t~vfpipa~v~~v~---------F--~~d~vl~~G~g~~v~~~~ 272 (325)
T KOG0649|consen 236 SSES--------------------------------TCVFPIPARVHLVD---------F--VDDCVLIGGEGNHVQSYT 272 (325)
T ss_pred CCCc--------------------------------eEEEecccceeEee---------e--ecceEEEeccccceeeee
Confidence 8543 22222333322111 1 356788888888899998
Q ss_pred CCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEec
Q 011216 427 LVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWE 468 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~ 468 (491)
+ +|.....+...+....+..|+..-- +|-.++....+.|+.
T Consensus 273 l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 273 L-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred e-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 7 5666666665555566777764433 455556666676653
No 165
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=8.7e-20 Score=151.05 Aligned_cols=288 Identities=17% Similarity=0.238 Sum_probs=199.0
Q ss_pred CceEEEEEcC--C-CCEEEEEEC----CCeEEEEECC--CCeEEEEEeeccCCceeEEEeEeCCCC-----ceEEEEecC
Q 011216 125 SRAYVSQFSA--D-GSLFVAGFQ----ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQ-----RHLVYASMS 190 (491)
Q Consensus 125 ~~v~~~~~s~--d-g~~l~~~~~----dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~l~~sp~~-----~~l~~~~~d 190 (491)
-+++++.||. + +.+||.|+- .+.|.|-.+. +++.+.. ....|..+++.+.|.|+. ++|++++
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~--a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-- 120 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED--ANFDHPYPVTKLMWIPDSKGVYPDLLATSS-- 120 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc--CCCCCCCCccceEecCCccccCcchhhccc--
Confidence 4578888883 3 347888873 4566666554 3332222 224778899999999987 3555543
Q ss_pred CeEEEEECCCC--ccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCe---eeEE
Q 011216 191 PIVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLR 264 (491)
Q Consensus 191 g~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~---~~~~ 264 (491)
..+++|.+... +...... +.......+..++++..|+. +-+++.+.+-|.+..|||++++. ....
T Consensus 121 D~LRlWri~~ee~~~~~~~~---------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSV---------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred CeEEEEeccCcCCceehhhh---------hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeE
Confidence 57999998743 2211111 11112234666999999997 77889999999999999999873 3566
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEeeCCC-cEEE
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQ-AIKL 342 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg-~i~i 342 (491)
+..|...|..++|.....+.|++.+.||.|++||+|..+- ...+..-.....+...++|++. -+++|+-..|. .|.|
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 7799999999999865668999999999999999995431 1222222222467888999874 46777766654 5999
Q ss_pred eeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeE
Q 011216 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 422 (491)
.|+|... .++..+++|.. .+....|.|. ....|++++.|..+
T Consensus 271 LDiR~P~---------------------------------tpva~L~~H~a--~VNgIaWaPh---S~~hictaGDD~qa 312 (364)
T KOG0290|consen 271 LDIRVPC---------------------------------TPVARLRNHQA--SVNGIAWAPH---SSSHICTAGDDCQA 312 (364)
T ss_pred EEecCCC---------------------------------cceehhhcCcc--cccceEecCC---CCceeeecCCcceE
Confidence 9999743 66778888873 3444456554 46789999999999
Q ss_pred EEEECCCcc------EEEEecCCCCCeeeeEecCCC-CeEEEEECCCcEEE
Q 011216 423 YVYDLVSGE------QVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVR 466 (491)
Q Consensus 423 ~iwd~~~~~------~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~Dg~i~i 466 (491)
.+||+.+-- ++..+. -.+.|+.+.|++.. .+|+.+. +.++.+
T Consensus 313 liWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 313 LIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred EEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999996532 222333 45789999999754 4777665 444444
No 166
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-21 Score=171.65 Aligned_cols=318 Identities=19% Similarity=0.272 Sum_probs=237.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC--CceEEEEecCCeEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~~~dg~i~ 194 (491)
...|..|.+.|..+.|...|..|++|+.|..|.+||...+.... ....+|...|....|-|. .+-+++++.||.|+
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l--~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL--SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccc--ccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 46788999999999999999999999999999999999874433 344677778888889884 47899999999999
Q ss_pred EEECCC-CccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEEe---ccC
Q 011216 195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AHT 269 (491)
Q Consensus 195 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~ 269 (491)
+=.+.. +.+..... ...|.++|.-++.-|+. ..|.+++.|+.+.-+|+.++.....+. .+.
T Consensus 213 ~s~i~~t~~~e~t~r--------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 213 VSEILETGYVENTKR--------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred eeeeccccceeccee--------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCC
Confidence 877643 33221221 22477789999999854 568899999999999998876543332 233
Q ss_pred C---CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC--Ccceeeec------cccccEEEEEEcCCCCEEEEeeCCC
Q 011216 270 S---DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQ 338 (491)
Q Consensus 270 ~---~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~------~~~~~i~~i~~sp~~~~l~~~~~dg 338 (491)
. ....++..|.+.+.+++|+.|..+++||.+..... ...+..+. ...-.|++++|+.++.-|+++-.|-
T Consensus 279 ~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe 358 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE 358 (559)
T ss_pred ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc
Confidence 3 56788888888889999999999999998744322 11122222 2234699999998887788788888
Q ss_pred cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeE-EEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA-TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
.|+++.-........... .+....+. .|++|....++..+- .|-|...|+++|+
T Consensus 359 ~IYLF~~~~~~G~~p~~~----------------------s~~~~~~k~vYKGHrN~~TVKgVN---FfGPrsEyVvSGS 413 (559)
T KOG1334|consen 359 DIYLFNKSMGDGSEPDPS----------------------SPREQYVKRVYKGHRNSRTVKGVN---FFGPRSEYVVSGS 413 (559)
T ss_pred ceEEeccccccCCCCCCC----------------------cchhhccchhhcccccccccceee---eccCccceEEecC
Confidence 899994332111000000 00012333 389998877765444 3566789999999
Q ss_pred cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 418 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
.-|.|.||+-.+++.+..+++...-|+||.=+|--+.||++|-|..|+||-..+.+..
T Consensus 414 DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 9999999999999999888877779999999999999999999999999998555443
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.5e-20 Score=163.53 Aligned_cols=254 Identities=19% Similarity=0.256 Sum_probs=182.5
Q ss_pred cCCceeEEEeEeCCCC--ceEEEEecCCeEEEEECCCCcccc-ccceeccccccccccCCCCCceecEEEEEEcC-CCCE
Q 011216 166 KSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRE 241 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~ 241 (491)
.-+.+.|++++|+|.. +.+++|...|+|-+||+.+.+... .... ...|..+|.++.|+| +...
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-------------f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-------------FTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE-------------eccCCccccceEecCCChhh
Confidence 4455689999999965 578888899999999996322211 1111 124778999999999 4568
Q ss_pred EEEEecCCeEEEEECCCCeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccE
Q 011216 242 LVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
+++.+.||+|++-|++.+.....+. .....+.++.|+ .+...++.+..=|...+||++. .+.....+.-|...|
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~-~e~~~vl~~~~~G~f~~iD~R~---~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFS-AESRSVLFGDNVGNFNVIDLRT---DGSEYENLRLHKKKI 325 (498)
T ss_pred eeeeccCceeeeeeecchhhHHHhhcCccceeeeecccc-CCCccEEEeecccceEEEEeec---CCccchhhhhhhccc
Confidence 9999999999999998875433332 345567788887 5566667777777999999993 333455667788899
Q ss_pred EEEEEcCCC-CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 320 TFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 320 ~~i~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
.+|+++|-. .+|++++.|++.+|||++....... ++...-.|. ..+.
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------------------------p~lst~~Hr--rsV~ 373 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------------------------PFLSTLPHR--RSVN 373 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCC------------------------------cceeccccc--ceee
Confidence 999999964 5789999999999999998654321 111112232 2233
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECC----CccEEEEecCCCC------CeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLV----SGEQVAALKYHTS------PVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~~------~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
.. .|||.+..|++.+.|..|+|||.. .-.+...+. |.. ......|.|+..++++|-.-..|-|+|
T Consensus 374 sA----yFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 374 SA----YFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ee----EEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33 455667669999999999999983 334444443 221 245578999999999999988899999
Q ss_pred CCCCC
Q 011216 469 FPGNG 473 (491)
Q Consensus 469 ~~~~~ 473 (491)
-..++
T Consensus 449 ~~~~q 453 (498)
T KOG4328|consen 449 GNGGQ 453 (498)
T ss_pred CCCCE
Confidence 77765
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=4.7e-19 Score=167.67 Aligned_cols=282 Identities=13% Similarity=0.159 Sum_probs=197.3
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCC
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
++.+.||++.............. .|+++.|+|. ..+|+.|.++|.|.+||+..+.......+ ....
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s---~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~l----------s~~~ 287 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPS---EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGL----------SALE 287 (555)
T ss_pred CceEEEEecCCCCCceEEEecCC---ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccc----------cccc
Confidence 35799999987633333333333 7999999995 56777888999999999987765321111 1122
Q ss_pred CCceecEEEEEEcCCC--CEEEEEecCCeEEEEECCCCeeeEE------Ee------ccCCCeEEEEEecCCCCEEEEEe
Q 011216 224 GGYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKLSLR------IL------AHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~------~~------~~~~~v~~i~~~~~~~~~l~s~s 289 (491)
..|+.++..+.|..+. ..+++++.||.|..|+++.-..... .. .....+++++|.+.+.+.|+.|+
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence 3588899999998754 4499999999999998865432110 00 12346899999988899999999
Q ss_pred CCCeEEEEeCccccCCC----cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeec
Q 011216 290 DDNLCKVWDRRCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 290 ~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
.+|.|.--+........ +....+..|.++|+++.++|-+..++..+.|.+++||......
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~---------------- 431 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA---------------- 431 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC----------------
Confidence 99999874443222222 3344666788999999999977665555559999999876311
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc--cEEEEecCCCCCe
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPV 443 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v 443 (491)
.++..+..+. ..+....|+|. ....++++..||.|.+||+... .++.....+....
T Consensus 432 -----------------~Pl~~~~~~~--~~v~~vaWSpt---rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l 489 (555)
T KOG1587|consen 432 -----------------SPLLSLDSSP--DYVTDVAWSPT---RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPAL 489 (555)
T ss_pred -----------------Ccchhhhhcc--ceeeeeEEcCc---CceEEEEEcCCCceehhhhhccccCCccccccccccc
Confidence 2333333333 12334444443 3457888888999999998653 4555555566777
Q ss_pred eeeEecCCCCeEEEEECCCcEEEecCCCCCCCCC
Q 011216 444 RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 444 ~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 477 (491)
+.+.|++.|+.|+.|+..|.+++|++...-..+.
T Consensus 490 ~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~ 523 (555)
T KOG1587|consen 490 TRVRWSPNGKLLAVGDANGTTHILKLSESLAVPS 523 (555)
T ss_pred ceeecCCCCcEEEEecCCCcEEEEEcCchhhccC
Confidence 8889999999999999999999999976544433
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.6e-20 Score=157.98 Aligned_cols=252 Identities=18% Similarity=0.229 Sum_probs=187.8
Q ss_pred CCCCceEEEEEcCCC----CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC-ceEEEEecCCeEEEE
Q 011216 122 QTTSRAYVSQFSADG----SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIV 196 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg----~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iw 196 (491)
.|....+.++|+-|. .+||+|+.-|.|+|.|+.++.... ...+|.+.|+.+.|.|+. +++++++.|..|++|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 588899999998764 479999999999999999874443 336788899999999976 788999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee--------------
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------------- 262 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-------------- 262 (491)
++++..++.++.-. .||.+.|.++.|+++|.+|++++.|.++.+|++...+..
T Consensus 164 nI~~~~Cv~VfGG~-------------egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t 230 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGV-------------EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT 230 (385)
T ss_pred eccCCeEEEEeccc-------------ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence 99999887766533 378889999999999999999999999999999742210
Q ss_pred --------E------EEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc----------CCCcceeeecccccc
Q 011216 263 --------L------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----------VKGKPAGVLMGHLEG 318 (491)
Q Consensus 263 --------~------~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~----------~~~~~~~~~~~~~~~ 318 (491)
. +-.-|...|-|+.|. ++++++-+-++.|..|..-... .....+..+.-....
T Consensus 231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred cCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 0 112477788888886 6899999999999999862111 011222333334445
Q ss_pred EEEEE--EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee
Q 011216 319 ITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 319 i~~i~--~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
|..+. |.|-++.||.|...|.|.+||++...+.. ..++..+....
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~--------------------------------~ttl~~s~~~~- 354 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK--------------------------------CTTLTHSKSGS- 354 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc--------------------------------CceEEeccccc-
Confidence 55555 46668899999999999999999854321 11111111111
Q ss_pred eEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
.+...+||.|+.+|+..+.|+.|.-||..
T Consensus 355 ---tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 355 ---TVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ---eeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 12334677799999999999999999964
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=3.4e-18 Score=165.44 Aligned_cols=292 Identities=32% Similarity=0.503 Sum_probs=221.7
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeeccCCceeEEEeEe-CCCCc-eEEEEec-CCeEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH 194 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~-sp~~~-~l~~~~~-dg~i~ 194 (491)
.+..|...+.++.|.+++..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 567899999999999999999999999999999998875 3333222111 35666666 88887 5555444 89999
Q ss_pred EEECCC-CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCeeeEEEeccCCCe
Q 011216 195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
+|+... ....... ..|...|..++|+|+++.+++++. ++.+++|++..+..+..+.+|...|
T Consensus 138 ~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 138 LWDLSTPGKLIRTL----------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred EEEecCCCeEEEEE----------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 999987 2222111 136668999999999998888886 9999999999988888888899999
Q ss_pred EEEEEecCCCC-EEEEEeCCCeEEEEeCccccCCCccee-eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCC
Q 011216 273 NTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 273 ~~i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 350 (491)
.+++|+ +++. .+++++.|+.|++||.. .+.... .+.+|.... ...|+|++..+++++.|+.+++|+++....
T Consensus 202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 202 SSLAFS-PDGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEEEEc-CCcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 999998 6666 55566999999999876 555665 577887775 448999998999999999999999987431
Q ss_pred ccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
.+..+.+|. ..+... .+.|++..+++++.|+.+.+||..+.
T Consensus 276 ---------------------------------~~~~~~~~~--~~v~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 276 ---------------------------------LLRTLSGHS--SSVLSV----AFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred ---------------------------------EEEEEecCC--ccEEEE----EECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 122222332 122222 45567788888988988999999888
Q ss_pred cEEEEec--CCCCCeeeeEecCCCCeEEEE-ECCCcEEEecCCCCC
Q 011216 431 EQVAALK--YHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGNG 473 (491)
Q Consensus 431 ~~~~~~~--~h~~~v~~~~~s~~~~~l~s~-~~Dg~i~iw~~~~~~ 473 (491)
....... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 7776665 788889999994332556555 688999999998876
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=8.8e-20 Score=157.19 Aligned_cols=208 Identities=18% Similarity=0.272 Sum_probs=163.1
Q ss_pred CCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCC-------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCe
Q 011216 222 DDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293 (491)
Q Consensus 222 ~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 293 (491)
...||+++|..++|+| +...||+|+.|.+|.||++..+ +++..+.+|...|..++|+|.-.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3458999999999999 6678999999999999998654 3466788999999999999888999999999999
Q ss_pred EEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCC
Q 011216 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
|.+|++. ++..+..+. |.+.|.++.|+.||.+|++.+.|..|+|||.++.
T Consensus 156 v~iWnv~----tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------------------------- 205 (472)
T KOG0303|consen 156 VSIWNVG----TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------------------------- 205 (472)
T ss_pred EEEEecc----CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC-------------------------
Confidence 9999998 777777776 9999999999999999999999999999999983
Q ss_pred cccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe---cCCeEEEEECCCccE---EEEecCCCCCeeeeE
Q 011216 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQ---VAALKYHTSPVRDCS 447 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~---~~~~~~h~~~v~~~~ 447 (491)
..+..-.+|...... +..|-. +|.++-+|. .+..+-+||..+-+. ...+. .++.|.---
T Consensus 206 ---------~~v~e~~~heG~k~~-Raifl~----~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PF 270 (472)
T KOG0303|consen 206 ---------TVVSEGVAHEGAKPA-RAIFLA----SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPF 270 (472)
T ss_pred ---------cEeeecccccCCCcc-eeEEec----cCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEee
Confidence 344444455443332 222322 677555553 367899999766443 33444 344566667
Q ss_pred ecCCCCeEEEEE-CCCcEEEecCCCCCC
Q 011216 448 WHPSQPMLVSSS-WDGDVVRWEFPGNGE 474 (491)
Q Consensus 448 ~s~~~~~l~s~~-~Dg~i~iw~~~~~~~ 474 (491)
|.+|..+++.+| .|+.|+.|++.+...
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 888888777665 699999999988763
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=4.5e-20 Score=169.13 Aligned_cols=259 Identities=17% Similarity=0.224 Sum_probs=193.5
Q ss_pred ccccccceecccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeC
Q 011216 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (491)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~s 178 (491)
+-+++....+.+.-.....+++.+|.+.|+|++|+.||+++|+|+.|..|.+|+-.-.. .....|...|.|+.|+
T Consensus 28 ~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-----~LkYSH~D~IQCMsFN 102 (1081)
T KOG1538|consen 28 ILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-----ILKYSHNDAIQCMSFN 102 (1081)
T ss_pred EEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-----eeeeccCCeeeEeecC
Confidence 33444444454555566678999999999999999999999999999999999865321 1224678899999999
Q ss_pred CCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 011216 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~ 258 (491)
|-...|++++-+ ..-+|..+......... ...+.+++|..||++|+.|-.+|+|.+-+-..
T Consensus 103 P~~h~LasCsLs-dFglWS~~qK~V~K~ks------------------s~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 103 PITHQLASCSLS-DFGLWSPEQKSVSKHKS------------------SSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred chHHHhhhcchh-hccccChhhhhHHhhhh------------------heeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 999999998754 46788876554432221 22789999999999999999999999987543
Q ss_pred CeeeEEEe---ccCCCeEEEEEecCC----CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEE
Q 011216 259 NKLSLRIL---AHTSDVNTVCFGDES----GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 259 ~~~~~~~~---~~~~~v~~i~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l 331 (491)
.+. ..+. +.+.+|.+++|+|.. ...+++.....++.++.+ .++.+..-..-.-...|+.+-++|.++
T Consensus 164 Eek-~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-----sG~~Igk~r~L~FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 164 EEK-VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-----SGKQIGKDRALNFDPCCISYFTNGEYI 237 (1081)
T ss_pred Ccc-eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-----cceeecccccCCCCchhheeccCCcEE
Confidence 333 2332 577899999999654 357888888888888887 455554333334445689999999999
Q ss_pred EEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc
Q 011216 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
+.|+.|+.+++|.-.. -.+-++.. .-...|..+..|+++
T Consensus 238 LiGGsdk~L~~fTR~G-----------------------------------vrLGTvg~------~D~WIWtV~~~PNsQ 276 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFTRDG-----------------------------------VRLGTVGE------QDSWIWTVQAKPNSQ 276 (1081)
T ss_pred EEccCCCceEEEeecC-----------------------------------eEEeeccc------cceeEEEEEEccCCc
Confidence 9999999999997543 11222111 124457777888999
Q ss_pred EEEEEecCCeEEEEECC
Q 011216 412 YIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 412 ~l~~g~~dg~i~iwd~~ 428 (491)
+++.|+.||+|..|++.
T Consensus 277 ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEEEccCeeehhhhH
Confidence 99999999999999874
No 173
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7e-20 Score=153.30 Aligned_cols=200 Identities=19% Similarity=0.261 Sum_probs=156.6
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcce
Q 011216 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 309 (491)
Q Consensus 230 v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 309 (491)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+ ++|+.|+++|.|..|.+||+. .+.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~----~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLL----KGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEec-CCCCEeeeecCCceeEEEecc----CCCce
Confidence 7799999999999999999999999999999888899999999999998 899999999999999999998 77777
Q ss_pred eeeccccccEEEEEEcCCCC-EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 310 GVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 310 ~~~~~~~~~i~~i~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
..+. ...+|+...|+|..+ ..++.-.+..-.+-++.... ..+
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~------------------------------------h~~ 143 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK------------------------------------HSV 143 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc------------------------------------eee
Confidence 7765 568999999999543 33333333334444443311 011
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC-CCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
-............-+..|.+.|+++++|...|.+.++|..+.+++..++-.. ..|..+.++..|+.|+.-+.|..|+.|
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 0000000111111112477789999999999999999999999999887555 789999999999999999999999999
Q ss_pred cCCC
Q 011216 468 EFPG 471 (491)
Q Consensus 468 ~~~~ 471 (491)
++..
T Consensus 224 e~~d 227 (405)
T KOG1273|consen 224 EISD 227 (405)
T ss_pred ehhh
Confidence 9873
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=1.1e-18 Score=161.82 Aligned_cols=283 Identities=12% Similarity=0.151 Sum_probs=173.3
Q ss_pred EEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCC-Cccccccceeccccccc
Q 011216 140 VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGS-GTMESLANVTEIHDGLD 217 (491)
Q Consensus 140 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 217 (491)
++...++.|.+|++.+...+....... ..+....++++|++++|++++ .++.|.+|++.. +.........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-------
Confidence 344678999999996432222222221 223577889999999987765 478899999863 3321111110
Q ss_pred cccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCe----eeEEEeccCCCeEEEEEecCCCCEEE-EEeCC
Q 011216 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIY-SGSDD 291 (491)
Q Consensus 218 ~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~d 291 (491)
.......++|+|++++|++++. ++.|.+|++.+.. .+..+ .+.....+++++ +++++++ +...+
T Consensus 78 --------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~-p~g~~l~v~~~~~ 147 (330)
T PRK11028 78 --------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANID-PDNRTLWVPCLKE 147 (330)
T ss_pred --------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeC-CCCCEEEEeeCCC
Confidence 0113567999999998888764 7899999997432 22222 233456778897 6666664 55567
Q ss_pred CeEEEEeCccccCCC-c--ceeeeccccccEEEEEEcCCCCEEEEeeC-CCcEEEeeCCCCCCccccccCcccceeecee
Q 011216 292 NLCKVWDRRCLNVKG-K--PAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 292 g~i~iwd~~~~~~~~-~--~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
+.|.+||+.....-. . ...... .......++|+|+|++++++.. ++.|.+|++.......
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~--------------- 211 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI--------------- 211 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE---------------
Confidence 999999996311000 0 001111 1234568999999999987765 8999999997421100
Q ss_pred ecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEEEEECCCcc----EEEEecCCCCC
Q 011216 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGE----QVAALKYHTSP 442 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~----~~~~~~~h~~~ 442 (491)
..+..+.................++|++++++++.. ++.|.+|++.... .+..+.. ...
T Consensus 212 ---------------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~ 275 (330)
T PRK11028 212 ---------------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQ 275 (330)
T ss_pred ---------------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-ccc
Confidence 011111110000000001112356789999999865 6899999986533 2222222 124
Q ss_pred eeeeEecCCCCeEEEEEC-CCcEEEecCCCC
Q 011216 443 VRDCSWHPSQPMLVSSSW-DGDVVRWEFPGN 472 (491)
Q Consensus 443 v~~~~~s~~~~~l~s~~~-Dg~i~iw~~~~~ 472 (491)
...++|+|||++|+++.. +++|.+|+++..
T Consensus 276 p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 276 PRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred CCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 568999999999988775 899999988643
No 175
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.9e-20 Score=165.87 Aligned_cols=243 Identities=17% Similarity=0.227 Sum_probs=185.4
Q ss_pred eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC--
Q 011216 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-- 240 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-- 240 (491)
+...+|.+.|.+|...|.|.+|++|+.||+|+||.+.++.++....+.. .|.|++|+|.+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-----------------~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-----------------EIRSVAWNPLSDLC 456 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-----------------eeEEEEecCCCCce
Confidence 4557899999999999999999999999999999999999987776543 799999999664
Q ss_pred EEEEEecCCeEEEEECCCC-------------------------------------eeeEEEeccCCCeEEEEEecCCCC
Q 011216 241 ELVAGSSDDCIYVYDLEAN-------------------------------------KLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~-------------------------------------~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
.||++-. ..+.|.+..-| .-+.....|...|+.+.|+ ..|.
T Consensus 457 vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGD 534 (733)
T KOG0650|consen 457 VLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGD 534 (733)
T ss_pred eEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCc
Confidence 3444332 22444432111 0122334688899999998 8899
Q ss_pred EEEEEeCC---CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccc
Q 011216 284 LIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 284 ~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
+|++...+ ..|.|.++. .......+....+.|.++.|+|...+|++++. ..|+|||+.....
T Consensus 535 YlatV~~~~~~~~VliHQLS----K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel---------- 599 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLS----KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL---------- 599 (733)
T ss_pred eEEEeccCCCcceEEEEecc----cccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH----------
Confidence 99988764 468899986 44444455556678999999999999888865 4699999976321
Q ss_pred ceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-cEEEEecCC
Q 011216 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYH 439 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h 439 (491)
+..+. +.....-+++++|.|.-|+.|+.|+.+..+|+.-. ++.++++.|
T Consensus 600 ------------------------vKkL~------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H 649 (733)
T KOG0650|consen 600 ------------------------VKKLL------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH 649 (733)
T ss_pred ------------------------HHHHh------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh
Confidence 11111 11123344567788999999999999999999754 677888999
Q ss_pred CCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 440 ~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
...+++|+|++.-+++++|+.||++.|+--
T Consensus 650 ~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 650 EKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999999999999999999999999998863
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.2e-18 Score=165.19 Aligned_cols=296 Identities=15% Similarity=0.146 Sum_probs=204.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
..|.-.++|.++||+++++|+|..||.|.+|.--. ...-......+-|...|++++|+++|.+|++|+.++.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999997543 11122223345566689999999999999999999999999999
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec-----------c
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----------H 268 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~ 268 (491)
+++...+.++. ++|..+.++||+.+.+....|..|.+....+......+.+ .
T Consensus 282 T~~kqfLPRLg-----------------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 282 TGKKQFLPRLG-----------------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred CCCcccccccC-----------------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccc
Confidence 99855444433 2899999999999999999999999998866554433322 2
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-----------cccccEEEEEEcCCCCEEEEee--
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----------GHLEGITFIDSRGDGRYLISNG-- 335 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~~~i~~i~~sp~~~~l~~~~-- 335 (491)
.+-.+.+++. |..+.++-.+..|.|.+||+. +...+..+. .+.-.++.++.+-.|.+++|.-
T Consensus 345 ~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~----td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~ 419 (792)
T KOG1963|consen 345 QSLTTGVSID-PRTNSLVLNGHPGHVQFYDLY----TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR 419 (792)
T ss_pred cccceeEEEc-CCCCceeecCCCceEEEEecc----ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence 3446778886 556677788899999999986 333332221 2334577788888899988763
Q ss_pred ------CCC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 336 ------KDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 336 ------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
.|| .+++|-.......... .......|... ....++....
T Consensus 420 ~d~~~~~~~e~~LKFW~~n~~~kt~~L-----------------------------~T~I~~PH~~~--~vat~~~~~~- 467 (792)
T KOG1963|consen 420 IDKFNFFDGEVSLKFWQYNPNSKTFIL-----------------------------NTKINNPHGNA--FVATIFLNPT- 467 (792)
T ss_pred ehhhhccCceEEEEEEEEcCCcceeEE-----------------------------EEEEecCCCce--eEEEEEecCc-
Confidence 232 4677765542211110 01111223321 1122222222
Q ss_pred CCCcEEEEEecCCeEEEEECCCcc----------EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 408 TGQKYIYTGSHDSCVYVYDLVSGE----------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 408 ~~~~~l~~g~~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.....++++.||.++||-+...+ +...-..|..++++++|+.||..| +.+.|++|.+||..+.
T Consensus 468 -rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 468 -RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred -ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 22278999999999999883321 222222478899999999999654 5667899999999883
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=2.6e-19 Score=148.23 Aligned_cols=252 Identities=19% Similarity=0.331 Sum_probs=182.7
Q ss_pred ceeEEEeEeCC--C-CceEEEEec----CCeEEEEECCC--CccccccceeccccccccccCCCCCceecEEEEEEcCCC
Q 011216 169 RWTVTDTSLSP--D-QRHLVYASM----SPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 169 ~~~v~~l~~sp--~-~~~l~~~~~----dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 239 (491)
.+.+.++.|+. + .-+|+.|+. .+.|.|..+.. ++..... ...|..+++.+.|.|+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a---------------~fd~~YP~tK~~wiPd~ 108 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA---------------NFDHPYPVTKLMWIPDS 108 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC---------------CCCCCCCccceEecCCc
Confidence 34678888873 3 347777773 35666665542 2222221 12477799999999976
Q ss_pred C-----EEEEEecCCeEEEEECCCCeeeE----EE-----eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC
Q 011216 240 R-----ELVAGSSDDCIYVYDLEANKLSL----RI-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 240 ~-----~l~~~~~dg~i~vwd~~~~~~~~----~~-----~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 305 (491)
. +||+. +..+++|.+...+... .+ ..+..++++..|+..+.+++.+.+-|-++.|||+.... .
T Consensus 109 ~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~-~ 185 (364)
T KOG0290|consen 109 KGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV-S 185 (364)
T ss_pred cccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-c
Confidence 3 44443 3469999987422111 11 24567999999998899999999999999999997331 3
Q ss_pred CcceeeeccccccEEEEEEcCCC-CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCe
Q 011216 306 GKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 384 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
+.....+..|...|..|+|...+ +.+++.+.||.+++||+|... ..
T Consensus 186 ~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le---------------------------------HS 232 (364)
T KOG0290|consen 186 GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE---------------------------------HS 232 (364)
T ss_pred cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc---------------------------------cc
Confidence 33466788999999999999855 578999999999999999854 22
Q ss_pred eEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-CeEEEEECCC-ccEEEEecCCCCCeeeeEecCCCC-eEEEEECC
Q 011216 385 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWD 461 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~D 461 (491)
...++.......+.+..++.. |.+++|+-..| ..|.|.|++. ..++..+++|.+.|+.++|.|... .|+|+|+|
T Consensus 233 TIIYE~p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD 309 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD 309 (364)
T ss_pred eEEecCCCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc
Confidence 333443333344555555554 67788886665 4799999976 468899999999999999999765 89999999
Q ss_pred CcEEEecCCCCCC
Q 011216 462 GDVVRWEFPGNGE 474 (491)
Q Consensus 462 g~i~iw~~~~~~~ 474 (491)
..+.+||+..-..
T Consensus 310 ~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 310 CQALIWDLQQMPR 322 (364)
T ss_pred ceEEEEecccccc
Confidence 9999999986443
No 178
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.9e-19 Score=147.83 Aligned_cols=220 Identities=20% Similarity=0.316 Sum_probs=156.6
Q ss_pred CCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC----eeeEEEeccCCCeEEEEEecC-CCCEEEEEeCCCeEEEEe
Q 011216 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~s~dg~i~iwd 298 (491)
.+|..-|.++.|.+.|+++++|+.|++|+|||.... .+....+.|.+.|..+.|.+| -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 367778999999999999999999999999997543 355667799999999999754 489999999999999997
Q ss_pred Ccccc-----CCCcceeeeccccccEEEEEEcCC--CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCC
Q 011216 299 RRCLN-----VKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (491)
Q Consensus 299 ~~~~~-----~~~~~~~~~~~~~~~i~~i~~sp~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
-.... ........+......|+.|.|.|. |-.|++++.||.|+||+.........-.... .+..+..+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~-----Ei~~~~~p 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH-----EIQNVIDP 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh-----hhhhccCC
Confidence 53111 122344566777889999999995 7789999999999999986632211110000 00000000
Q ss_pred CCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC---CCcEEEEEecC-----CeEEEEECCCc----cEEEEecCC
Q 011216 372 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST---GQKYIYTGSHD-----SCVYVYDLVSG----EQVAALKYH 439 (491)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~d-----g~i~iwd~~~~----~~~~~~~~h 439 (491)
| ..+. ...++..|+| ...+||+|+.+ +.++||....+ ..+..+.+|
T Consensus 165 p----------------~~~~------~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 165 P----------------GKNK------QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred c----------------cccc------CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 0 0000 1112222322 24678888876 47888876543 245677799
Q ss_pred CCCeeeeEecCCC----CeEEEEECCCcEEEecCCC
Q 011216 440 TSPVRDCSWHPSQ----PMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 440 ~~~v~~~~~s~~~----~~l~s~~~Dg~i~iw~~~~ 471 (491)
..+|++++|.|+- .+||+++.|| |+||++..
T Consensus 223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 9999999999963 4899999999 99999985
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=176.80 Aligned_cols=294 Identities=15% Similarity=0.246 Sum_probs=216.8
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..+.+|.+.|+|+.|...|.++++|+.|..++||..+++.++. ...+|.+.|+.++.+.++.++++++.|..|++|.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3557999999999999999999999999999999998875444 5579999999999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE---Ee-ccCCCeE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---IL-AHTSDVN 273 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~-~~~~~v~ 273 (491)
+.++..+.+.. ||++.|++++|+|-. +.+.||++++||.+-.-.... +. .....+.
T Consensus 261 l~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~ 320 (1113)
T KOG0644|consen 261 LPDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVD 320 (1113)
T ss_pred cCCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccccee
Confidence 99998776654 799999999999854 778899999999871111100 11 1234566
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-CEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
++.|. ..+.-+++|+.|+.-..|..... ..+...+..+..+.+- .+.+++-.+-.+++|++.++
T Consensus 321 s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---- 385 (1113)
T KOG0644|consen 321 SILFE-NNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---- 385 (1113)
T ss_pred eeecc-ccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecccc----
Confidence 67775 77788999999999998876421 1122222222232222 35566666778899998873
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
+......+|.....++. ++|. +.+...+++.||...|||+..|.+
T Consensus 386 ------------------------------~l~H~l~ghsd~~yvLd--~Hpf---n~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 386 ------------------------------QLLHNLMGHSDEVYVLD--VHPF---NPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ------------------------------hhhhhhcccccceeeee--ecCC---CcHhhhhccCCCceEeeecccCCc
Confidence 33444445554333332 2332 456778899999999999999988
Q ss_pred EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCCCCccceEEeeec
Q 011216 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFY 490 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~~~~~~~f~ 490 (491)
++.+....+.+.+..||+||..++....-|.++|.....+. ..++.+..+||
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~------s~k~ak~dqff 482 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK------SQKKAKYDQFF 482 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc------cccccccceEe
Confidence 87765445677888999999999998888999998765543 23444555555
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.3e-20 Score=167.05 Aligned_cols=258 Identities=16% Similarity=0.224 Sum_probs=179.8
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
....|...|+.++|.|....|++++.||.+.+|++..........+ .+.....+|.++|.|+++.+++..++
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~--------epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV--------EPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce--------eeeEEEecccCceEEEEecCCceEEE
Confidence 4456777899999999999999999999999999943111000000 11122347999999999999999999
Q ss_pred EEecCCeEEEEECCCC----------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec
Q 011216 244 AGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
+|+.||+|+.|++... .....+.+|.+.|+.++++ .....|++++.||+++.|+.. ...+ ..+.
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Llscs~DgTvr~w~~~----~~~~-~~f~ 434 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLSCSSDGTVRLWEPT----EESP-CTFG 434 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceeeecCCceEEeeccC----CcCc-cccC
Confidence 9999999999966422 1234667999999999998 667779999999999999985 2222 2222
Q ss_pred cc--cccEEEEEEcCCC-CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc
Q 011216 314 GH--LEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 314 ~~--~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
.. .+...++++-... .+.++ +.....+++.++... +.+..+..
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~-------------------------------s~~~~~~s 480 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVV-------------------------------SDLLIFES 480 (577)
T ss_pred CccccCCcceEeeccchhHhhhh---hcccccccchhhhhh-------------------------------hheeeccc
Confidence 21 1223455553322 12222 233344444332221 11111111
Q ss_pred cc-----eeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEE
Q 011216 391 HS-----VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 391 ~~-----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~ 465 (491)
.. ........+ ..|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.||.++
T Consensus 481 ~~~~~~~~~~~in~vV----s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVV----SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred cCCCcccccCccceEE----ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceee
Confidence 11 001122222 334678999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q 011216 466 RWEFPGNG 473 (491)
Q Consensus 466 iw~~~~~~ 473 (491)
+|++....
T Consensus 557 l~kld~k~ 564 (577)
T KOG0642|consen 557 LWKLDVKT 564 (577)
T ss_pred hhhccchh
Confidence 99986654
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=1.9e-18 Score=168.88 Aligned_cols=318 Identities=16% Similarity=0.195 Sum_probs=203.2
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCC----eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
..++.|...|..++.+++. .++++|+.||+|++||..+- ............+..+.++...+.++.+|+++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 3567899999999987765 99999999999999998642 222333344445568999999999999999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCC-EEEEEecCCeEEEEECCCCeeeEEEe--cc
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AH 268 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~~ 268 (491)
|++.+++................... ...-+..-+|.. .+. .++.+...+.|..||+.......+++ ..
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~-------~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKK-------DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEEEEccccccccceeeeeecccccC-------CCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 99999876322111111111101000 111233334443 233 78888888999999998776544433 34
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-cccccEEEEEEcCC---CCEEEEee--CCCcEEE
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGD---GRYLISNG--KDQAIKL 342 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~i~~sp~---~~~l~~~~--~dg~i~i 342 (491)
.+.|++++.+ +.+++++.|+..|.+.+||+| -..++..+. .+..+|..+..+|- ....++++ ..+.|.+
T Consensus 1195 hG~vTSi~id-p~~~WlviGts~G~l~lWDLR----F~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1195 HGLVTSIVID-PWCNWLVIGTSRGQLVLWDLR----FRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccceeEEEec-CCceEEEEecCCceEEEEEee----cCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 5789999997 788899999999999999998 666666554 34567787777664 34555444 4678999
Q ss_pred eeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeE
Q 011216 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 422 (491)
|++.++.....+-...... ......|.+..- +.+. .....+ .+...+.++.+|+.|..|
T Consensus 1270 wn~~~g~~~~vl~~s~~~p------------~ls~~~Ps~~~~---kp~~--~~~~~~----~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAP------------ILSYALPSNDAR---KPDS--LAGISC----GVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred eecccCcceEEEEcCCCCc------------chhhhcccccCC---CCCc--ccceee----ecccCCceeeecCCccce
Confidence 9999864433221110000 000000000000 0000 111111 122246788999999999
Q ss_pred EEEECCCccEE------------------------------------------------EEe--------cCCCCCeeee
Q 011216 423 YVYDLVSGEQV------------------------------------------------AAL--------KYHTSPVRDC 446 (491)
Q Consensus 423 ~iwd~~~~~~~------------------------------------------------~~~--------~~h~~~v~~~ 446 (491)
+.||....+.. ..+ ..|..+|+++
T Consensus 1329 R~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdm 1408 (1431)
T KOG1240|consen 1329 RKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDM 1408 (1431)
T ss_pred eeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhh
Confidence 99997532111 000 1367789999
Q ss_pred EecCCC-CeEEEEECCCcEEEec
Q 011216 447 SWHPSQ-PMLVSSSWDGDVVRWE 468 (491)
Q Consensus 447 ~~s~~~-~~l~s~~~Dg~i~iw~ 468 (491)
++.... .+|++++.||.|+||.
T Consensus 1409 a~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1409 ATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhccCccEEEEecCCCeeeecC
Confidence 887655 4899999999999995
No 182
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.83 E-value=2.3e-18 Score=144.68 Aligned_cols=214 Identities=15% Similarity=0.122 Sum_probs=171.0
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC-C
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-G 199 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~-~ 199 (491)
+-...+|+|.||++|+..+|.+..+..|.||................|...|+.++|+|..+.|++++.|..-++|.. .
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 344689999999999999999999999999999877656666677888999999999999999999999999999998 5
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee----EEEeccCCCeEEE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTV 275 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~i 275 (491)
.++......+.. +....+++.|+|.++.|++|+....|.||-++...-- ..-+.+.+.|+++
T Consensus 87 ~~~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl 152 (361)
T KOG1523|consen 87 GGTWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL 152 (361)
T ss_pred CCeeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee
Confidence 666555544443 4458999999999999999999999999987654321 1223567889999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCC--------------CcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEE
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVK--------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------------~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~ 341 (491)
.|+ +++-+|++|+.|+.++++..-..... +.....+....+.+..+.|+|+|..|+-.+.|..+.
T Consensus 153 dWh-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 153 DWH-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred ecc-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 998 77889999999999999975311111 111222223456799999999999999999999999
Q ss_pred EeeCCCCC
Q 011216 342 LWDIRKMS 349 (491)
Q Consensus 342 iwd~~~~~ 349 (491)
+-|.....
T Consensus 232 ~~da~~p~ 239 (361)
T KOG1523|consen 232 FVDAAGPS 239 (361)
T ss_pred EeecCCCc
Confidence 99987654
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=7.7e-19 Score=151.45 Aligned_cols=243 Identities=13% Similarity=0.187 Sum_probs=175.2
Q ss_pred CCEEEE---EECCCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEEECCCCcccccccee
Q 011216 136 GSLFVA---GFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 136 g~~l~~---~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 210 (491)
.++||. ++..|-..|.-+.. |..-.......+|.++|.+++|+|- ...||+||.|.+|.||.+..+.......
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-- 121 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-- 121 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--
Confidence 345554 22334444444432 3222333445689999999999994 5788999999999999997655433222
Q ss_pred ccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe
Q 011216 211 EIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 289 (491)
-+.....||...|--++|+|. .+.|++++.|.+|.+||+.+++.+.++. |.+.|.++.|+ .+|.+|++.+
T Consensus 122 -------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~Ttc 192 (472)
T KOG0303|consen 122 -------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTTC 192 (472)
T ss_pred -------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeeec
Confidence 111223479999999999995 4678999999999999999999888885 99999999998 8999999999
Q ss_pred CCCeEEEEeCccccCCCcceeeecccccc-EEEEEEcCCCCEEEEee---CCCcEEEeeCCCCCCccccccCcccceeec
Q 011216 290 DDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 290 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~~i~~sp~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
.|..|+|||.+ .++.+..-.+|.+. -..+.|-.+|..+.+|- .+..+-+||..+.+.+.
T Consensus 193 kDKkvRv~dpr----~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~------------- 255 (472)
T KOG0303|consen 193 KDKKVRVIDPR----RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI------------- 255 (472)
T ss_pred ccceeEEEcCC----CCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc-------------
Confidence 99999999999 88888777777653 34556777888555543 46789999988765432
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECCCcc
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGE 431 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~ 431 (491)
.+..+.... .+.-|.|.+|.++++.++ .|+.|+-|.+....
T Consensus 256 ------------------~~~elDtSn-------Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 256 ------------------ALQELDTSN-------GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ------------------eeEEeccCC-------ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 122222222 123356777888887655 49999999986654
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=2.2e-19 Score=163.73 Aligned_cols=244 Identities=16% Similarity=0.200 Sum_probs=174.2
Q ss_pred eCCCCceEEE--EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEE
Q 011216 177 LSPDQRHLVY--ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYV 253 (491)
Q Consensus 177 ~sp~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~v 253 (491)
|+.+...+++ ++..|.|.||++...-.+.-..++....+ ..|+++.|.| |...|++++.||.|++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ng------------t~vtDl~WdPFD~~rLAVa~ddg~i~l 654 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNG------------TLVTDLHWDPFDDERLAVATDDGQINL 654 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccC------------ceeeecccCCCChHHeeecccCceEEE
Confidence 4445555554 45678999999975433322222222221 2699999999 7788999999999999
Q ss_pred EECCCCe-------eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC
Q 011216 254 YDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 254 wd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp 326 (491)
|.+..+. +...+..|...|+++.|+|-..+.|++++.|.+|++||++ ..+....+.+|.+.|..++|+|
T Consensus 655 Wr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~----~~~~~~~l~gHtdqIf~~AWSp 730 (1012)
T KOG1445|consen 655 WRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA----NAKLYSRLVGHTDQIFGIAWSP 730 (1012)
T ss_pred EEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh----hhhhhheeccCcCceeEEEECC
Confidence 9987643 4456778999999999998888999999999999999998 8888889999999999999999
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
+|+.+++.+.||+|++|+.++.... +..-++... ....+..|..
T Consensus 731 dGr~~AtVcKDg~~rVy~Prs~e~p---------------------------------v~Eg~gpvg-tRgARi~wac-- 774 (1012)
T KOG1445|consen 731 DGRRIATVCKDGTLRVYEPRSREQP---------------------------------VYEGKGPVG-TRGARILWAC-- 774 (1012)
T ss_pred CCcceeeeecCceEEEeCCCCCCCc---------------------------------cccCCCCcc-CcceeEEEEe--
Confidence 9999999999999999999885432 222111111 1112233333
Q ss_pred cCCCcEEEEEecCC----eEEEEECCCc--cEEEEecCCC-CCeeeeEecCCCC-eEEEEECCCcEEEecCCCCCC
Q 011216 407 STGQKYIYTGSHDS----CVYVYDLVSG--EQVAALKYHT-SPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 407 s~~~~~l~~g~~dg----~i~iwd~~~~--~~~~~~~~h~-~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+|+++++.+.|. .|.+||..+- .++.+..-.. -.+.--.+.+|.. +|++|-.|..|.+|++.....
T Consensus 775 --dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 775 --DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred --cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 799988887764 6888987653 2333321111 1112223455555 677888899999999876654
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=3.3e-18 Score=143.86 Aligned_cols=210 Identities=20% Similarity=0.303 Sum_probs=160.4
Q ss_pred CCceEEEEEc-------CCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce---eEEEeEeCCCCceEEEEecCCeE
Q 011216 124 TSRAYVSQFS-------ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIV 193 (491)
Q Consensus 124 ~~~v~~~~~s-------~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~l~~~~~dg~i 193 (491)
...|+..+|= |+.+++|+.+.+.-|.+||.-+|+..... ..-.|.. ...+++|+|||.+|++| ....|
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrci 181 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCI 181 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch-hhhhhHHhhhhheeEEecCCCCeEeec-ccceE
Confidence 5667777775 67889999999999999999998443322 2222322 35689999999998765 57899
Q ss_pred EEEEC-CCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCC
Q 011216 194 HIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 194 ~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (491)
+++|+ ..|+.-....... ....+..+-|.+++|+| +.+.+++|+....+-|+.-..+.++..+.+|.+.
T Consensus 182 rvFdt~RpGr~c~vy~t~~---------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG 252 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVT---------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG 252 (406)
T ss_pred EEeeccCCCCCCcchhhhh---------cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC
Confidence 99998 4454322222111 11224456899999999 5568999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEeC-CCeEEEEeCccccCCCcceeeeccccc-cEE--EEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 272 VNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLE-GIT--FIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~--~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
|+.++|. ++++.|++|+. |-.|..||+| ....++..+..|.+ .-. -....|++++|++|+.||.|++||+.+
T Consensus 253 vThL~~~-edGn~lfsGaRk~dkIl~WDiR---~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 253 VTHLQWC-EDGNKLFSGARKDDKILCWDIR---YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eeeEEec-cCcCeecccccCCCeEEEEeeh---hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999998 78888888875 6789999998 35566777777765 222 345578999999999999999999987
Q ss_pred C
Q 011216 348 M 348 (491)
Q Consensus 348 ~ 348 (491)
.
T Consensus 329 ~ 329 (406)
T KOG2919|consen 329 L 329 (406)
T ss_pred C
Confidence 3
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1e-16 Score=155.08 Aligned_cols=292 Identities=28% Similarity=0.445 Sum_probs=214.4
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCc-eEEEEecCCe
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPI 192 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~dg~ 192 (491)
.....+..|...|.+++|+|+++++++++. |+.+++|++..+..+.. ...|...|.+++|+|++. .+++++.|+.
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST---LAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe---eccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 445677899999999999999999998885 99999999987544433 234777899999999998 5555589999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee-eEEEeccCCC
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 271 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~ 271 (491)
|++||...+..... ...+|.... ...|++++..+++++.|+.+++|++..... ...+..|...
T Consensus 223 i~~wd~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 223 IRLWDLSTGKLLRS---------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred EEEEECCCCcEEee---------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 99998775544331 011243343 338999998899999999999999987664 4444678899
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec--cccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCC
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~ 348 (491)
+.++.|. +++..+++++.|+.+.+||.. ......... .|...+..+.+.+++..++.+ ..|+.+.+|++...
T Consensus 287 v~~~~~~-~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 287 VLSVAFS-PDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred EEEEEEC-CCCCEEEEeeCCCcEEEEEcC----CCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCC
Confidence 9999998 567777779999999999886 444444443 677778999994332455555 67888999998873
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
. .......... .....++++...+..+..++.+.+|+..
T Consensus 362 ~----------------------------------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 362 K----------------------------------PLKTLEGHSN-------VLSVSFSPDGRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred c----------------------------------eeEEecCCce-------EEEEEECCCCCEEEEecCCCceEEEecc
Confidence 2 1111111111 1122333321223347889999999999
Q ss_pred CccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
..........+...+....+++++..+++++.++.+.+|+...
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 401 TGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 8888777765447899999999999999999999999999987
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=5.5e-18 Score=160.47 Aligned_cols=275 Identities=16% Similarity=0.159 Sum_probs=189.7
Q ss_pred ccccCCCCCccccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEE---EEEeeccCCceeEEEeEeCCCCce-
Q 011216 109 SRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPDQRH- 183 (491)
Q Consensus 109 ~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~- 183 (491)
+.......+...-.-..+|.|++|+|. ..+||.|..+|.|.+||+..+... ........|..+++.+.|..+..-
T Consensus 227 W~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 227 WSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred EecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCC
Confidence 333333455666677899999999995 567888889999999999876431 112334678889999999775544
Q ss_pred -EEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCe-
Q 011216 184 -LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK- 260 (491)
Q Consensus 184 -l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~- 260 (491)
+++++.||.|..|+++.-............. .......-...+++++|.+ +...+++|+..|.|..-+....+
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhccccccc----ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 9999999999999876433211111111000 0011111223789999998 55689999999998874433222
Q ss_pred -------eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-CEEE
Q 011216 261 -------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLI 332 (491)
Q Consensus 261 -------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~ 332 (491)
....+..|.++|.++.++|-....|++++ |.+++||.-. ....++..+..+...+++++|||.. ..|+
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---~~~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---VIASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeec-cceeEecccc---CCCCcchhhhhccceeeeeEEcCcCceEEE
Confidence 12345578999999999976666676666 9999999864 2446666777788889999999965 5678
Q ss_pred EeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcE
Q 011216 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
++..||.|.+||+..... .++...+-.. .......++++|+.
T Consensus 459 ~~d~~G~l~iWDLl~~~~--------------------------------~Pv~s~~~~~------~~l~~~~~s~~g~~ 500 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDE--------------------------------EPVLSQKVCS------PALTRVRWSPNGKL 500 (555)
T ss_pred EEcCCCceehhhhhcccc--------------------------------CCcccccccc------cccceeecCCCCcE
Confidence 888899999999986432 2222222221 11122356678999
Q ss_pred EEEEecCCeEEEEECCC
Q 011216 413 IYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 413 l~~g~~dg~i~iwd~~~ 429 (491)
|++|...|.+.+|++..
T Consensus 501 lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 501 LAVGDANGTTHILKLSE 517 (555)
T ss_pred EEEecCCCcEEEEEcCc
Confidence 99999999999999853
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=149.35 Aligned_cols=264 Identities=12% Similarity=0.110 Sum_probs=186.5
Q ss_pred cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
.+|.+.|+++.|+.++++|++|+.|..+++|+++..-.....+.... ....|...|.|++|...++.+++|
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~---------~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV---------MEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee---------ccCccccceEEEEEccCCeeEecC
Confidence 47888999999999999999999999999999875433222111110 112467799999999999999999
Q ss_pred ecCCeEEEEECCCCeeeEEEec--cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 246 SSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
..+++|...|+++.+.+..+.. ..+.|..+..+ |..+.|++.+.++.|.+||.+.......++ .+.........+.
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAE 201 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeee
Confidence 9999999999999988766632 23589999998 557899999999999999998443233332 2333445677888
Q ss_pred EcCCC-CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 324 SRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 324 ~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
|+|.. .+|++.+..+-+.+||++...... ..+.+...+..-..-..
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~---------------------------------~~~~~~~~L~~~~~~~M 248 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQARPV---------------------------------YQRSMFKGLPQENTEWM 248 (609)
T ss_pred ecCCCceeEEeccccCCCCceeeccccchH---------------------------------HhhhccccCcccchhhh
Confidence 99964 567788888889999999854321 11111111111000112
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCcc-EEEEecCC------CCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYH------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h------~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+..|+|+|..+++--....-.+||+.+.+ .+..+... ...+.+++|..|.. +++|+.+=.|++|.++...+
T Consensus 249 ~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 249 GSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred heeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCcc
Confidence 33577789888887766667788887744 34444311 13577888876655 99999999999999986544
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.4e-19 Score=158.83 Aligned_cols=272 Identities=11% Similarity=0.106 Sum_probs=191.6
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-----CeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~-----~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
..+..|.+.|..++|.|....|++++.||+|.+|+++. ...+.......+|.++|.|+++.+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 47789999999999999999999999999999999932 3456667788999999999999999999999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe--ccCC
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTS 270 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~ 270 (491)
|+.|++....- .. ...+.. .-.....||.+.++.+++++....|++++.||+++.|+.....+ ..+. ...+
T Consensus 368 I~~w~~p~n~d-p~----ds~dp~-vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g 440 (577)
T KOG0642|consen 368 IRCWNLPPNQD-PD----DSYDPS-VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHG 440 (577)
T ss_pred eeeeccCCCCC-cc----cccCcc-hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccC
Confidence 99998752211 00 000000 01122348999999999999988999999999999999877665 2232 2234
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-------cccccEEEEEEcCCCCEEEEeeCCCcEEEe
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLW 343 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~i~~i~~sp~~~~l~~~~~dg~i~iw 343 (491)
...++.+-.......++...-+.-.+.+.. ....+..+. .....+..+.++|++.+.+++..|+.|+++
T Consensus 441 ~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e----v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 441 YPLSVDRTSSRPAHSLASFRFGYTSIDDME----VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred CcceEeeccchhHhhhhhcccccccchhhh----hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 456666642221222222222222233322 111111111 112346778899999999999999999999
Q ss_pred eCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEE
Q 011216 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 423 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 423 (491)
|..+. ..+.....|. ....+.++.|+|.+|++++.|+.++
T Consensus 517 dn~~~----------------------------------~~l~s~~a~~------~svtslai~~ng~~l~s~s~d~sv~ 556 (577)
T KOG0642|consen 517 DNKTG----------------------------------KILHSMVAHK------DSVTSLAIDPNGPYLMSGSHDGSVR 556 (577)
T ss_pred ccccc----------------------------------ccchheeecc------ceecceeecCCCceEEeecCCceee
Confidence 99884 3344444443 2234457888999999999999999
Q ss_pred EEECCCccEEEEecCCC
Q 011216 424 VYDLVSGEQVAALKYHT 440 (491)
Q Consensus 424 iwd~~~~~~~~~~~~h~ 440 (491)
+|.+....++.....|.
T Consensus 557 l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 557 LWKLDVKTCVLESTAHR 573 (577)
T ss_pred hhhccchheeecccccc
Confidence 99998777776666554
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=2.9e-18 Score=163.76 Aligned_cols=235 Identities=20% Similarity=0.222 Sum_probs=162.6
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---CeEEEEECCCCccccccceeccccccccccC
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
+..|.+||.+... ... ...+...+...+|+|||+.|++++.+ ..|.+||+.+++...+....
T Consensus 183 ~~~i~i~d~dg~~-~~~---lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFI---VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceE---eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 222 23445579999999999999988754 37999999887643322111
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEe-cCCeE--EEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEE-EeCCCeEEEE
Q 011216 222 DDGGYSFGIFSLKFSTDGRELVAGS-SDDCI--YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVW 297 (491)
Q Consensus 222 ~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i--~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s-~s~dg~i~iw 297 (491)
+ ....++|+|||+.|+.++ .+|.+ ++||+.+++. ..+..+...+....|+ ++++.|+. +..++...||
T Consensus 248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence 1 233579999999888765 57765 4557666654 4566677778899998 67776554 4467888999
Q ss_pred eCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccc
Q 011216 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
++... +.....+ .+.. ....|+|||++|+..+.++ +.+||+.+...
T Consensus 320 ~~~~~---~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~--------------------------- 365 (429)
T PRK01742 320 RMSAS---GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST--------------------------- 365 (429)
T ss_pred EEECC---CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe---------------------------
Confidence 87521 2222222 3333 4578999999998887765 66699876321
Q ss_pred cCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC--CCccEEEEecCCCCCeeeeEecCC
Q 011216 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL--VSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~--~~~~~~~~~~~h~~~v~~~~~s~~ 451 (491)
..+.... ...++.|+|||++|+.++.++.+.+|++ .+|+.+..+..|.+.+..++|+|-
T Consensus 366 --------~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 366 --------EVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------EEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 1111110 0135678999999999999998888875 368888889888899999999985
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=4.8e-18 Score=140.73 Aligned_cols=209 Identities=14% Similarity=0.206 Sum_probs=161.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec---cCCceeEEEeEeCC--CCceEEEEecCCeEEEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~sp--~~~~l~~~~~dg~i~iw 196 (491)
.+-+.|.|+.|.|++..||+-. |..|.+|+++.+..+...+.. ..++...++-+|+| +++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 5567999999999999999875 779999999987653322221 23455688889999 67777765 48999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCC-eeeEEEeccCCCeEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~ 274 (491)
|+.+......+. ..|...|..+.|+|+.+ +|++++.||.|++||.+.. .++..+.+|.-.|.+
T Consensus 199 D~RT~~~~~sI~---------------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 199 DLRTMKKNNSIE---------------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred Eccchhhhcchh---------------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 999765433222 24555899999999765 6788999999999999764 467788899999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCcccc-------------------------CCCcceeeeccccccEEEEEEcCCCC
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLN-------------------------VKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~i~~i~~sp~~~ 329 (491)
+.|+|...+++++|+.|..|.+|...... .....+..+..|.+.|++++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999899999999999999999754211 01123446677999999999987544
Q ss_pred -EEEEeeCCCcEEEeeCCC
Q 011216 330 -YLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 330 -~l~~~~~dg~i~iwd~~~ 347 (491)
.+|+-+.||.+.|=.+..
T Consensus 344 WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeEEEeccCceEEeecCCh
Confidence 567889999998876543
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=7.4e-18 Score=147.04 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=155.1
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee
Q 011216 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 310 (491)
Q Consensus 231 ~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 310 (491)
..++|+.+|..|++++.||++++|+..+...+.....|...|.++.|+ +++.+|++-+.| ..+||+.+ .+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~----~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVN----TGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEec----cCchhh
Confidence 689999999999999999999999998888888888999999999998 899999999999 99999998 554444
Q ss_pred eec--cccccEEEEEEcCCC-----CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCC
Q 011216 311 VLM--GHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 311 ~~~--~~~~~i~~i~~sp~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
... ........+.|+.|+ ..++....-+.|+.||+.......... ..+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-------------------------~~~ 276 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-------------------------LRK 276 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-------------------------hhh
Confidence 443 223345567777766 233334445667777776532210000 001
Q ss_pred eeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec-CCCCCeeeeEecCCCCeEEEEECCC
Q 011216 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~Dg 462 (491)
.+.. + ....+++.|++|+++|.|+.||.|-|++..+-+.+...+ .|...|+.+.|+||.+++++.+.|.
T Consensus 277 ~~~~---~-------~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 277 KIKR---F-------KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred hhhc---c-------CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 1111 1 122345778899999999999999999998888776664 8999999999999999999999999
Q ss_pred cEEEecCCCCCCC
Q 011216 463 DVVRWEFPGNGEA 475 (491)
Q Consensus 463 ~i~iw~~~~~~~~ 475 (491)
...+..+..+...
T Consensus 347 ~~~v~~l~vd~~~ 359 (398)
T KOG0771|consen 347 EAAVTKLAVDKTM 359 (398)
T ss_pred ceeEEEEeecccc
Confidence 9999998875543
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.1e-17 Score=141.01 Aligned_cols=330 Identities=18% Similarity=0.205 Sum_probs=203.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEEEEECCCCcccccc
Q 011216 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 207 (491)
-+.|||+|+++|+++.- .+.|-|..+-+..+.... -..|..+.|..|..+++++ ..++.|.+|++...+....+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c----ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC----LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH----HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 36899999999999766 788888776422221111 2257789999988776664 56779999999866543322
Q ss_pred ceeccccccccccCCCCCceecEEEEEEcCCCCEEEE-EecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (491)
.+. ..++.+++|||||+.++. ..-+-.|.+|.+.+.+... +......+..++|+ +++++.+
T Consensus 88 --deg--------------~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~-~dg~f~a 149 (447)
T KOG4497|consen 88 --DEG--------------QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFH-PDGQFCA 149 (447)
T ss_pred --ccC--------------CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEEC-CCCceee
Confidence 221 227889999999976554 5558889999998876543 22223456788887 7788777
Q ss_pred EEeC------------------------------------CCeEEEEeCccccCCCcceeeeccc-cccEEEEEEcCCCC
Q 011216 287 SGSD------------------------------------DNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGR 329 (491)
Q Consensus 287 s~s~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~i~~sp~~~ 329 (491)
..+. +..+.+||-- -....+.-| .-++..++|+|.++
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~------Leykv~aYe~~lG~k~v~wsP~~q 223 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV------LEYKVYAYERGLGLKFVEWSPCNQ 223 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch------hhheeeeeeeccceeEEEeccccc
Confidence 6653 2234455521 111111122 25788999999999
Q ss_pred EEEEeeCCCcEEEeeCCCCCCcccc---------------ccCcccceeeceeecCCCCcccccCCCC-----------C
Q 011216 330 YLISNGKDQAIKLWDIRKMSSNASC---------------NLGFRSYEWDYRWMDYPPQARDLKHPCD-----------Q 383 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 383 (491)
+|++|+.|+.+++.+--+.+....+ ............++.+.|.......... .
T Consensus 224 flavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv 303 (447)
T KOG4497|consen 224 FLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPV 303 (447)
T ss_pred eEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcce
Confidence 9999999999988664442221111 0111112222233334332221111100 1
Q ss_pred eeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC--CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC
Q 011216 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D 461 (491)
.+..++............--.+||+|..|+++-... +.+.+||++..+.-..+. ...+|....|+|....|+.+...
T Consensus 304 ~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~ 382 (447)
T KOG4497|consen 304 KVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGK 382 (447)
T ss_pred eeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCC
Confidence 111122111111111112234688899999987653 689999998776655553 46689999999999999988888
Q ss_pred CcEEEecCCCCCCCCCCCCccceEEee
Q 011216 462 GDVVRWEFPGNGEAAPPLNKKRIRRRQ 488 (491)
Q Consensus 462 g~i~iw~~~~~~~~~~~~~~~~~~~~~ 488 (491)
..+++|..........+.....++..+
T Consensus 383 srLY~W~psg~~~V~vP~~GF~i~~l~ 409 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKGFNIQKLQ 409 (447)
T ss_pred ceEEEEcCCCceEEecCCCCceeeeEE
Confidence 889999988765544444444454443
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=5.7e-16 Score=133.03 Aligned_cols=280 Identities=16% Similarity=0.254 Sum_probs=196.4
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC--CeEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d--g~i~iwd~~~~ 201 (491)
...+..+.|..|...|..|+.|| .++|+.+.-.+.. ........|.-+-|+. .++|..+.+ ..+++++.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC
Confidence 45677788999999999999997 6788876542211 1112222455566654 455555544 35888888877
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec---cCCCeEEEEEe
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFG 278 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~i~~~ 278 (491)
..+.....+. +|.++.++.+ +|+++-.+. |+|||+.+.+.+.++.. +...+.+++++
T Consensus 79 ~~ICe~~fpt-----------------~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 79 TTICEIFFPT-----------------SILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred ceEEEEecCC-----------------ceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccC
Confidence 6655544332 7889998743 566665554 99999999998887753 44456666665
Q ss_pred cCCCCEEEEEe--CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCc-EEEeeCCCCCCccccc
Q 011216 279 DESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCN 355 (491)
Q Consensus 279 ~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~ 355 (491)
..+.+++.-+ ..|.|.+||.. +.+++..+..|.+.+.+++|+++|.+||+++..|+ |+|+.+.+
T Consensus 139 -~~n~ylAyp~s~t~GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-------- 205 (391)
T KOG2110|consen 139 -NANCYLAYPGSTTSGDVVLFDTI----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-------- 205 (391)
T ss_pred -CCCceEEecCCCCCceEEEEEcc----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--------
Confidence 4455666433 46899999997 78888999999999999999999999999999998 79999977
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE---
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--- 432 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--- 432 (491)
++.+..|+...... -.++.+|+|++.+|++.+..++|.+|.+.....
T Consensus 206 --------------------------G~kl~eFRRG~~~~----~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~ 255 (391)
T KOG2110|consen 206 --------------------------GQKLYEFRRGTYPV----SIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPP 255 (391)
T ss_pred --------------------------ccEeeeeeCCceee----EEEEEEECCCCCeEEEecCCCeEEEEEecccccCCC
Confidence 45666666444322 345667888999999999999999998753210
Q ss_pred ------------------------E----------EEecCCCCCe-eeeEec--CCCCeEEEEECCCcEEEecCCCC
Q 011216 433 ------------------------V----------AALKYHTSPV-RDCSWH--PSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 433 ------------------------~----------~~~~~h~~~v-~~~~~s--~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
+ ...+...+.. ..+.+. +..+.+..++.||.++.|.++..
T Consensus 256 ~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 256 ESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 0 0000011111 223344 46778999999999999999875
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.80 E-value=1.9e-16 Score=146.92 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=158.8
Q ss_pred CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd~~~~ 201 (491)
.+....++++||+++|++++ .++.|.+|++.....+...... ...+....++|+|++++|++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34567889999999987764 5788999999732122211111 12224678999999999888775 789999999643
Q ss_pred c-cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCeeeEE-----Ee-ccCCCeE
Q 011216 202 T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLR-----IL-AHTSDVN 273 (491)
Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-----~~-~~~~~v~ 273 (491)
. ......... +.....+++++|+++++++++ .++.|.+||+.+...+.. .. .......
T Consensus 113 g~~~~~~~~~~--------------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 113 GIPVAPIQIIE--------------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred CCCCCceeecc--------------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 2 211111000 111456788999999886555 569999999976432211 11 1223467
Q ss_pred EEEEecCCCCEEEEEeC-CCeEEEEeCccccCCCcceeeeccc------cccEEEEEEcCCCCEEEEeeC-CCcEEEeeC
Q 011216 274 TVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK-DQAIKLWDI 345 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~i~~sp~~~~l~~~~~-dg~i~iwd~ 345 (491)
.+.|+ +++++++++.. ++.|.+|++.......+.+..+..+ ......+.++|++++++++.. ++.|.+|++
T Consensus 179 ~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 179 HMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred eEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 89998 78888877776 8999999996211111222222211 112335889999999988754 688999998
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEEE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV 424 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~i 424 (491)
..... . ..+.++.... .......++|+|++|++++. ++.|.+
T Consensus 258 ~~~~~---------------------------------~-~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 258 SEDGS---------------------------------V-LSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred eCCCC---------------------------------e-EEEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 65211 1 1111111000 11223467889999998876 889999
Q ss_pred EECC
Q 011216 425 YDLV 428 (491)
Q Consensus 425 wd~~ 428 (491)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 9874
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.2e-17 Score=133.50 Aligned_cols=254 Identities=15% Similarity=0.246 Sum_probs=172.2
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.|..-+|+|.+++|++|..+|.|.+..+.+-...... .+ -........+|.++++.++|. ..+|++|+ ||.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----~~-gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----PP-GKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGL 82 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-----CC-CCcceeeccccCCCeeeeeee--hhheeecc-Cce
Confidence 4666789999999999999999999998643221110 00 011122235788999999998 33566655 599
Q ss_pred EEEEECCCCee------e--EEEeccC-----CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc
Q 011216 251 IYVYDLEANKL------S--LRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 251 i~vwd~~~~~~------~--~~~~~~~-----~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
|+-|..+.... + .....|. ..|+++... |..+-++.++.|+.++-||+. .++....+.+|++
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi~~AgGD~~~y~~dlE----~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSILFAGGDGVIYQVDLE----DGRIQREYRGHTD 157 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcEEEecCCeEEEEEEec----CCEEEEEEcCCcc
Confidence 99998754321 1 1111222 368888886 445555566689999999998 8999999999999
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeee
Q 011216 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.|.++.-......+++|+.||++++||.++.+.... +..++.....++-
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~-------------------------------ie~yk~~~~lRp~ 206 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM-------------------------------IEPYKNPNLLRPD 206 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEE-------------------------------eccccChhhcCcc
Confidence 999999866666799999999999999998543221 1111111111100
Q ss_pred EEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
...|-.+...+..+|++|+. ..+.+|.+++.++...+. -..++..+.|- ...+++++.-+.|.-|.+...-+
T Consensus 207 -~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~ 278 (325)
T KOG0649|consen 207 -WGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVLQ 278 (325)
T ss_pred -cCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee--cceEEEeccccceeeeeeccEEE
Confidence 00111223336678888764 459999999998887775 45678888884 44677888777888888776433
No 197
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=6.6e-19 Score=165.46 Aligned_cols=244 Identities=21% Similarity=0.285 Sum_probs=190.2
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~ 244 (491)
..+|...|+|+.|...|.++++|+.|..++||..+++.+..... ||.+.|+.++.+.+..++++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r----------------Ghs~ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR----------------GHSGDITDLAVSSNNTMIAA 249 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC----------------CCccccchhccchhhhhhhh
Confidence 35788899999999999999999999999999998887754443 79999999999999999999
Q ss_pred EecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccC--CCcceeeeccccccEEEE
Q 011216 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--KGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~i~~i 322 (491)
++.|..|++|.+..+.++..+.+|++.|++++|+|- .+.+.||++++||.+-... ...+. .+ ....-+.++
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~-~~-~~~~~~~s~ 322 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPL-KF-TEKDLVDSI 322 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCC-Cc-ccccceeee
Confidence 999999999999999999999999999999999843 2788999999999871100 01111 11 122456677
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
.|-.++.-+++++.|+.-..|.+..... +.. ...|
T Consensus 323 ~~~~~~~~f~Tgs~d~ea~n~e~~~l~~----------------------------------------~~~-----~lif 357 (1113)
T KOG0644|consen 323 LFENNGDRFLTGSRDGEARNHEFEQLAW----------------------------------------RSN-----LLIF 357 (1113)
T ss_pred eccccccccccccCCcccccchhhHhhh----------------------------------------hcc-----ceEE
Confidence 7888888899999999888887654111 000 0001
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCCCCCC
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
....+.-..+.+++-.+-.+++|++.+|..++.+.+|...+..+.++|-+. ...+++.||...|||+..+....
T Consensus 358 ~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 358 VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred EeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 100011124667777788899999999999999999999999999999777 45588999999999998876543
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=7e-18 Score=147.22 Aligned_cols=197 Identities=17% Similarity=0.192 Sum_probs=149.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccccc
Q 011216 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (491)
.+++|++||..|++|+.||++|||++.+. ........|...|.++.|+|||+.|++.+.| ..+||+++++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 88999999999999999999999997764 3334445677789999999999999999999 8999999999554433
Q ss_pred ceeccccccccccCCCCCceecEEEEEEcCCC---CEEE--EEecCCeEEEEECCCCee-----eEEEeccCCCeEEEEE
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---RELV--AGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF 277 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~---~~l~--~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~i~~ 277 (491)
.... -......+.|+.|+ .+++ ....-+.|+.||+...+. .++.......|++++.
T Consensus 224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 3211 11256678888877 3333 333445677776643222 1122233457999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcce-eeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+ .+|++++.|+.||.|.|++.. .-+.+ ..-+.|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAK----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEec----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 8 899999999999999999986 33333 33457899999999999999999999999888887654
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=1.6e-17 Score=148.89 Aligned_cols=209 Identities=16% Similarity=0.180 Sum_probs=161.3
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (491)
..|+.++.||.+.+.+-... +.. ....|.+.|.+-.|+|||.-|++++.||.|++|.-.. ........
T Consensus 76 d~~~i~s~DGkf~il~k~~r--VE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q------- 143 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--VER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQ------- 143 (737)
T ss_pred ceEEEEcCCceEEEecccch--hhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhh-------
Confidence 46888889999998875432 222 3357888999999999999999999999999998543 32222111
Q ss_pred ccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEE
Q 011216 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (491)
Q Consensus 217 ~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~i 296 (491)
...+|+|++|.|+.+.++.+. .+.+.|=.+.....+.+.+.|.+-|.++.|+ +..+++++|+.|-..++
T Consensus 144 ---------~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 144 ---------NEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI 212 (737)
T ss_pred ---------cCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence 112899999999887666653 4568888888888888899999999999998 77889999999999999
Q ss_pred EeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccc
Q 011216 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
||. .+..+..-..|..+|++++|.|+ +.++.++.+ ++++=..+
T Consensus 213 WD~-----~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p~------------------------------ 255 (737)
T KOG1524|consen 213 WDA-----QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSPR------------------------------ 255 (737)
T ss_pred ecc-----cCcccccCChhccceeeeeeccc-cceeeeeee-eeeecCCC------------------------------
Confidence 997 67888888889999999999999 666666543 34421111
Q ss_pred ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
....|..+||+||..+++|+..|.+.+-.
T Consensus 256 ---------------------~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 256 ---------------------VGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ---------------------ccceEEEEEcCCCceeeccccCceEEEee
Confidence 13346678888999999999999776543
No 200
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=3.7e-17 Score=146.55 Aligned_cols=265 Identities=14% Similarity=0.189 Sum_probs=179.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC-------CCceEEEEecCCeEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-------DQRHLVYASMSPIVH 194 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-------~~~~l~~~~~dg~i~ 194 (491)
.|...|.|+.|+.+...+.++.++-.+.-|++.+. ........... -.+.+-.-+ ....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df--~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDF--VPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCccc--CCccccccccccCCCCCcceEEEEcCCceEE
Confidence 45667779999988877776655544444555433 22111111110 111111111 235788889999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
|.+-. ++...... .|.+.+.+-.|+|||.-|++++.||.|++|.- +|....++.....+|.|
T Consensus 89 il~k~-~rVE~sv~----------------AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 89 ILNKS-ARVERSIS----------------AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred Eeccc-chhhhhhh----------------hhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEE
Confidence 98743 33322221 47779999999999999999999999999985 44444455567789999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
++|.|..++.+++.+. .+.|=.+. ....+..++.|.+-|.++.|++....+++|+.|-..++||-..
T Consensus 151 ~~W~p~S~~vl~c~g~--h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G------- 217 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGG--HISIKPLA----ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG------- 217 (737)
T ss_pred EEECCCCCceEEecCC--eEEEeecc----cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-------
Confidence 9998766777776554 45554444 4556678899999999999999999999999999999999764
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
..+..-..|... + .+.+|.|+ +.++.++.+ +++
T Consensus 218 ----------------------------~~Lf~S~~~ey~--I----TSva~npd-~~~~v~S~n-t~R----------- 250 (737)
T KOG1524|consen 218 ----------------------------ANLFTSAAEEYA--I----TSVAFNPE-KDYLLWSYN-TAR----------- 250 (737)
T ss_pred ----------------------------cccccCChhccc--e----eeeeeccc-cceeeeeee-eee-----------
Confidence 333333334322 2 33466677 666666543 233
Q ss_pred EecCCCCCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
--+...+.|..++||+||..++.|...|.+.+=
T Consensus 251 ~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 251 FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 112356789999999999999999999987653
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=3.6e-16 Score=141.53 Aligned_cols=289 Identities=18% Similarity=0.260 Sum_probs=199.6
Q ss_pred CCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 122 QTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
.|...-+.+..+|||+|+. +|..--.|++||+.+-. +.. ..+-....|.-.-++.|-..++.--.|.+|.+....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKF--ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKF--ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce-eee--eecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 4567778899999999865 56667799999998742 111 111112234444455555556666667777665322
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
|... ...++. .-.+++++.-.--|++++....|+-++++.|..+..+....+.++++..+ +
T Consensus 125 G~hy-~~RIP~-----------------~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~ 185 (703)
T KOG2321|consen 125 GRHY-RTRIPK-----------------FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSIN-E 185 (703)
T ss_pred Ceee-eeecCc-----------------CCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeec-C
Confidence 2111 111111 23456666433335555566679999999999998888778999999998 6
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeee------ccccc-----cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL------MGHLE-----GITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------~~~~~-----~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
...+|++|+.+|.|..||.++. ..+..+ ..|.+ .|+++.|+.+|-.+++|..+|.+.|||++...
T Consensus 186 ~hgLla~Gt~~g~VEfwDpR~k----srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 186 EHGLLACGTEDGVVEFWDPRDK----SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred ccceEEecccCceEEEecchhh----hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 7779999999999999999833 322222 22333 39999999999999999999999999999843
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
+ ...+.|.....+....|... .+++.|++. ....++|||-.+
T Consensus 262 p-----------------------------------l~~kdh~~e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 262 P-----------------------------------LLVKDHGYELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECT 303 (703)
T ss_pred c-----------------------------------eeecccCCccceeeeccccc--CCCceEEec-chHHhhhccccc
Confidence 2 22233443344455555444 234445444 456799999999
Q ss_pred ccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 430 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
|+....+.. ...++++|+-|++-++.++-.++.+..|=++.-+++|
T Consensus 304 Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaP 349 (703)
T KOG2321|consen 304 GKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAP 349 (703)
T ss_pred CCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccccCCCc
Confidence 999998874 4459999999999999999999999888887765543
No 202
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=1.3e-16 Score=138.51 Aligned_cols=272 Identities=15% Similarity=0.197 Sum_probs=185.9
Q ss_pred eEEEeEeCCCCc-eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~l~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
+|..+.|.++.. .|++|+.|..|++|.+..+....-.... .-......|...|+++.|+|+|..|++|+.+|
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V-------~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g 87 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV-------EYLSSLSRHTRAVNVVRFSPDGELLASGGDGG 87 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE-------EEeecccCCcceeEEEEEcCCcCeeeecCCCc
Confidence 799999998776 9999999999999998765443211000 01122346888999999999999999999999
Q ss_pred eEEEEECC--------C--------CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec
Q 011216 250 CIYVYDLE--------A--------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 250 ~i~vwd~~--------~--------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
.|.+|-.. + ......+.+|...|..++|+ ++++++++++.|..+++||+. .+.....+.
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~Dv~----~G~l~~~~~ 162 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLWDVH----AGQLLAILD 162 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEEEec----cceeEeecc
Confidence 99999765 2 12334566899999999998 889999999999999999998 889999999
Q ss_pred cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce
Q 011216 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
+|...+..++|.|-++++++-+.|...+.+.+........... + -+ .........+...+.+..
T Consensus 163 dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~-------~--~m----~~~~~~~~e~~s~rLfhD--- 226 (434)
T KOG1009|consen 163 DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL-------D--IM----PAKAFNEREGKSTRLFHD--- 226 (434)
T ss_pred ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee-------e--Ee----eecccCCCCcceeeeeec---
Confidence 9999999999999999999999998777776654322111100 0 00 000001111122222221
Q ss_pred eeeeEEEEecCcccCCCcEEEEEec----CC-----eEEEEECCC-ccEEEEecCCCCCeeeeEecC-------------
Q 011216 394 LRTLIRCHFSPVYSTGQKYIYTGSH----DS-----CVYVYDLVS-GEQVAALKYHTSPVRDCSWHP------------- 450 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~g~~----dg-----~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~------------- 450 (491)
.+...+.+.+.|+|+|.+|++... .+ ..|+|+-.. .++...+.....+...+.|+|
T Consensus 227 -eTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~ 305 (434)
T KOG1009|consen 227 -ETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF 305 (434)
T ss_pred -CchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence 222334456678899999987643 22 345555432 245555655555666666655
Q ss_pred -----CCCeEEEEECCCcEEEecCCCC
Q 011216 451 -----SQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 451 -----~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.+-.+|.++ ...|++||....
T Consensus 306 ~~~lpyrlvfaiAt-~~svyvydtq~~ 331 (434)
T KOG1009|consen 306 LFVLPYRLVFAIAT-KNSVYVYDTQTL 331 (434)
T ss_pred ccccccceEEEEee-cceEEEeccccc
Confidence 222455554 456999997764
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=6.9e-15 Score=126.45 Aligned_cols=198 Identities=14% Similarity=0.193 Sum_probs=151.7
Q ss_pred CceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 125 SRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
..|--+-||. .++|..+.+ ..+++++...+..+-...... .|.++.++ .+.|+++-.+. |.|||+.+.+
T Consensus 47 ~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk 117 (391)
T KOG2110|consen 47 VSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMN--RKRLVVCLEES-IYIYDIKDMK 117 (391)
T ss_pred eEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEc--cceEEEEEccc-EEEEecccce
Confidence 3444555654 466655543 459999998875555544333 68888885 44566665544 9999999988
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
.+........ +...+.++.+++.+.+++.-+ ..|.|.+||..+-+.+..+..|.+.+.+++|+ +
T Consensus 118 lLhTI~t~~~-------------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs-~ 183 (391)
T KOG2110|consen 118 LLHTIETTPP-------------NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFS-P 183 (391)
T ss_pred eehhhhccCC-------------CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEEC-C
Confidence 8766554322 222577777777777888743 36899999999999999999999999999998 8
Q ss_pred CCCEEEEEeCCCe-EEEEeCccccCCCcceeeeccc--cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 281 SGHLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 281 ~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~~--~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
+|.+||+++..|+ |||+.+. .+..+..+..- ...|.+++|+|++++|++.+..++|++|.+....
T Consensus 184 ~G~llATASeKGTVIRVf~v~----~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVP----EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CCCEEEEeccCceEEEEEEcC----CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999999996 6899997 77777776533 3458899999999999999999999999998754
No 204
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=9.6e-16 Score=146.10 Aligned_cols=235 Identities=17% Similarity=0.212 Sum_probs=158.3
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec---CCeEEEEECCCCccccccceeccccccccccCC
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.+||.+.... ... ..+...+...+|+|||+.|+..+. +..|.+|++.+++...+.....
T Consensus 179 ~~l~~~d~dg~~~-~~l---t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~----------- 243 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR----------- 243 (429)
T ss_pred eeEEEEcCCCCCC-EEe---ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-----------
Confidence 3799999876532 222 123347899999999999987653 3579999998876544332211
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-ecCC--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC-CCeEEEE-
Q 011216 223 DGGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVW- 297 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg~i~iw- 297 (491)
.+...+|+|||+.|+.. +.+| .|++||+.+++.. .+..+...+....|+ ++++.|+..+. ++...+|
T Consensus 244 ------~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 244 ------HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWF-PDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred ------CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEEC-CCCCEEEEEeCCCCCceEEE
Confidence 23457999999988865 3344 5999999887654 444455567889998 77777766654 4555555
Q ss_pred -eCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC---CcEEEeeCCCCCCccccccCcccceeeceeecCCCC
Q 011216 298 -DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 298 -d~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
|+. .+ ....+..+........|+|||++|+..+.+ ..|.+||+.+..
T Consensus 316 ~d~~----~g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~------------------------ 366 (429)
T PRK03629 316 VNIN----GG-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------------------------ 366 (429)
T ss_pred EECC----CC-CeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC------------------------
Confidence 543 22 233443344455678999999999876543 358888887632
Q ss_pred cccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCe---EEEEECCCccEEEEecCCCCCeeeeEecC
Q 011216 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC---VYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~---i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 450 (491)
...+.... ....|.|+|||++|+.++.++. ++++++ +|.....+..|.+.+...+|+|
T Consensus 367 -----------~~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 367 -----------VQVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -----------eEEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 12222110 1135789999999999988764 777787 5666777888889999999998
Q ss_pred C
Q 011216 451 S 451 (491)
Q Consensus 451 ~ 451 (491)
-
T Consensus 428 ~ 428 (429)
T PRK03629 428 Y 428 (429)
T ss_pred C
Confidence 3
No 205
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.76 E-value=4.4e-16 Score=132.34 Aligned_cols=308 Identities=18% Similarity=0.295 Sum_probs=199.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE----EEEEeecc----------CCceeEEEeEeCCCC--ceEEEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAK----------SLRWTVTDTSLSPDQ--RHLVYA 187 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~----------~~~~~v~~l~~sp~~--~~l~~~ 187 (491)
.+-|.++.|..+|.+||+|..+|.|.++.-..... .......+ .....|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56789999999999999999999999997554321 11111111 112368899999876 466677
Q ss_pred ecCCeEEEEECCCCcccc-ccceeccc-----ccccc------------c--cCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 188 SMSPIVHIVDVGSGTMES-LANVTEIH-----DGLDF------------S--AADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~-~~~~~~~~-----~~~~~------------~--~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
+.|.+|++|.+....... -...+... ..+.. . ..-...|+.-|.++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 789999999986543322 00000000 00000 0 011247899999999999999888874
Q ss_pred CCeEEEEECCCCeeeE---EEecc-----CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee---------
Q 011216 248 DDCIYVYDLEANKLSL---RILAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--------- 310 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~---~~~~~-----~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------- 310 (491)
|=.|.+|+++--.... -++.+ ..-|++..|+|...++|+..+..|+|++.|+|....-.....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6679999986433222 22222 345889999998999999999999999999983221111111
Q ss_pred ---eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEE
Q 011216 311 ---VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 311 ---~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
-+.+--..|..+.|+++|+++++-.. -+|++||+.... +++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~---------------------------------~pv~t 309 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA---------------------------------KPVET 309 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---------------------------------CcceE
Confidence 11222345778999999999997643 579999996532 45555
Q ss_pred Ecccceeee---------eEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE-EEec--------------------
Q 011216 388 YKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AALK-------------------- 437 (491)
Q Consensus 388 ~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~-------------------- 437 (491)
+.-|..... .+--.|..+|+.++.++++|+....++++++..|... .++.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~ 389 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSS 389 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecC
Confidence 555543221 1122344567778899999999999999996554211 0000
Q ss_pred CC-------------CCCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 438 YH-------------TSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 438 ~h-------------~~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
+. ...|...+|+|..+.+|.+..+. ++|+
T Consensus 390 g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 390 GKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred CCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 00 12355678999999888887654 5544
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.75 E-value=2.7e-16 Score=132.43 Aligned_cols=247 Identities=15% Similarity=0.139 Sum_probs=174.2
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
.+|+|.+|++|...++++.....|.||.....+.-...... ..|...|+.+.|+|..+.|++++.|.
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-------------s~Hd~~vtgvdWap~snrIvtcs~dr 77 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-------------SEHDKIVTGVDWAPKSNRIVTCSHDR 77 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-------------hhhCcceeEEeecCCCCceeEccCCC
Confidence 38999999999999999999999999998877632222222 23666899999999999999999999
Q ss_pred eEEEEEC-CCC--eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC
Q 011216 250 CIYVYDL-EAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 250 ~i~vwd~-~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp 326 (491)
.-++|.. ..+ ++...+..++...+++.|+ |.++.|++|+....|.||-+...+.-......-..+...|++++|+|
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred CccccccCCCCeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 9999998 433 3455677899999999998 78899999999999999987633222122223345678899999999
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
++-+|++|+.|+.++++..--...... .....| .-..|.++.+..+... -.......|
T Consensus 157 nnVLlaaGs~D~k~rVfSayIK~Vdek----pap~pW------------gsk~PFG~lm~E~~~~------ggwvh~v~f 214 (361)
T KOG1523|consen 157 NNVLLAAGSTDGKCRVFSAYIKGVDEK----PAPTPW------------GSKMPFGQLMSEASSS------GGWVHGVLF 214 (361)
T ss_pred CcceecccccCcceeEEEEeeeccccC----CCCCCC------------ccCCcHHHHHHhhccC------CCceeeeEe
Confidence 999999999999999986422110000 000000 0111122333333211 122344467
Q ss_pred cCCCcEEEEEecCCeEEEEECCCcc-EEEEecCCCCCeeeeEecCCC
Q 011216 407 STGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 407 s~~~~~l~~g~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~s~~~ 452 (491)
+|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|-.+.
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence 8899999999999999999986664 334443334677777776543
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.74 E-value=1.6e-14 Score=133.42 Aligned_cols=308 Identities=16% Similarity=0.140 Sum_probs=184.7
Q ss_pred CEEE-EEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccc
Q 011216 137 SLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (491)
++++ +-..++.|.|.|..+.+.+........ .-..+.|+|||+++++++.||.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~---- 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG---- 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----
Confidence 4444 455689999999999877766543322 23457799999999999999999999999998765554322
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCeeeEEEecc-------CCCeEEEEEecCCCCEEEE
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGHLIYS 287 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~~l~s 287 (491)
...++++++||++++++. ..+.+.++|.++.+.+..+... ...+..+..+|....++++
T Consensus 79 -------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 79 -------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -------------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 567899999999998776 5899999999999988877532 3467788777444445555
Q ss_pred EeCCCeEEEEeCccccCCCcce-eeeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCCCCccccccCcccc----
Q 011216 288 GSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSY---- 361 (491)
Q Consensus 288 ~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~---- 361 (491)
.-..+.|.+.|.. ....+ ..............|+|++++++++ ..++.|-++|..+.........+....
T Consensus 146 lkd~~~I~vVdy~----d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 146 LKDTGEIWVVDYS----DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp ETTTTEEEEEETT----TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred EccCCeEEEEEec----cccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccc
Confidence 5566888888876 22222 2222234456788999999987664 456679999988765443322211111
Q ss_pred ----------eeeceeec------CCCCccc-ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEE----ecCC
Q 011216 362 ----------EWDYRWMD------YPPQARD-LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG----SHDS 420 (491)
Q Consensus 362 ----------~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----~~dg 420 (491)
.|...-.. ...+... ......+.++.+...... .-...+|+++++.+. ...+
T Consensus 222 ~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-------lFi~thP~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-------LFIKTHPDSRYVWVDTFLNPDAD 294 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---------EE--TT-SEEEEE-TT-SSHT
T ss_pred ccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-------ceeecCCCCccEEeeccCCCCCc
Confidence 12111000 0000000 111223444444433211 111347899999998 4457
Q ss_pred eEEEEECCCccEEEEecCC-CCCeeeeEecCCCCeEEEEECC--CcEEEecCCCCCCC
Q 011216 421 CVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWD--GDVVRWEFPGNGEA 475 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~D--g~i~iw~~~~~~~~ 475 (491)
.|.++|..+.+.+..+... ...+..+.|++||+.+..+.++ |.|.+||..+.++.
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred eEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 9999999999888887532 2358999999999976666544 36999998876543
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=2e-17 Score=145.70 Aligned_cols=273 Identities=18% Similarity=0.238 Sum_probs=204.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
.-.-+.+.++.+|++|+.|+.-|.|-.+|..++.....+. ....|.++.|-.+.+++|++ ....+.|||-..-+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEE
Confidence 3445789999999999999999999999999874444332 23369999999988888876 467899999765544
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
.++... ..|..+.|-|..-+|++++..|.+.--|+.+|+.+..+....+.+..++-+ |-+.
T Consensus 204 HClk~~------------------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~Na 264 (545)
T KOG1272|consen 204 HCLKRH------------------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNA 264 (545)
T ss_pred eehhhc------------------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccc
Confidence 333322 168889999999899999999999999999999999988888899999998 6677
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccccee
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.+-+|...|+|.+|... ...++..+..|.++|.+|++.++|+|++|.+.|..++|||++.....
T Consensus 265 Vih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql------------ 328 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL------------ 328 (545)
T ss_pred eEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc------------
Confidence 89999999999999987 77888889999999999999999999999999999999999985421
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE-CCCc--cEEEEecCC-
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD-LVSG--EQVAALKYH- 439 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd-~~~~--~~~~~~~~h- 439 (491)
.++..... ....++| +..+||.+ ....|.||. .-.+ ..-..+-.|
T Consensus 329 ----------------------~t~~tp~~-------a~~ls~S-qkglLA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~ 377 (545)
T KOG1272|consen 329 ----------------------HTYRTPHP-------ASNLSLS-QKGLLALS-YGDHVQIWKDALKGSGHGETPYMNHR 377 (545)
T ss_pred ----------------------ceeecCCC-------ccccccc-cccceeee-cCCeeeeehhhhcCCCCCCcchhhhc
Confidence 11111000 0111233 23344444 455699995 2221 111112122
Q ss_pred -CCCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 440 -TSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 440 -~~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
.++|.++.|.|-...|-.|-.-|.-.+.
T Consensus 378 ~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 378 CGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred cCcccccceeccHHHeeeccccCCceeEe
Confidence 4589999999988777777666654444
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=6.5e-16 Score=138.80 Aligned_cols=279 Identities=16% Similarity=0.191 Sum_probs=180.3
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccC-CceeEEEeEe-----CCCCceEEEEecCCeEEEEEC
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSL-----SPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~-----sp~~~~l~~~~~dg~i~iwd~ 198 (491)
+.+....++-.|.+|+..-. ..+.+|+...+..+...+.... ......|-+| .|.+--|+++-.-|.|.+.|.
T Consensus 124 g~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred cceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 34556666777788776643 3689998875422222211110 0012333334 456777888888899999887
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
...+...++...... ....++|+.|-|. ...++++-.+|.+++||..- ....+...|
T Consensus 203 ~~~~~sklfne~r~i------------~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~~~~t~p~~ 260 (636)
T KOG2394|consen 203 INFEVSKLFNEERLI------------NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------VCGATAPSY 260 (636)
T ss_pred hhhHHHHhhhhcccc------------cccceEEEEEEeCCCceEEEEEecCceEEeeccc----------cccCCCCcc
Confidence 653332222211111 1237999999994 45677778899999998721 111121222
Q ss_pred e-cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 278 G-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 278 ~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
. .+++..+... .|--. ....++..+.--.+.|..++|+|||++||+.+.||.++|||..++.....
T Consensus 261 ~~~k~~~~f~i~-------t~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~--- 327 (636)
T KOG2394|consen 261 QALKDGDQFAIL-------TSKSK---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV--- 327 (636)
T ss_pred cccCCCCeeEEe-------eeecc---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH---
Confidence 1 1344444332 22211 02244555554556899999999999999999999999999988432211
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
++ +. .....+.+|||||+||++|++|--|.||.+..++.++.-
T Consensus 328 -------------------------------mk--SY----FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 328 -------------------------------MK--SY----FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred -------------------------------HH--hh----ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 11 11 122234478889999999999999999999999999999
Q ss_pred cCCCCCeeeeEecC-----------------------------------CC-------------CeEEEEECCCcEEEec
Q 011216 437 KYHTSPVRDCSWHP-----------------------------------SQ-------------PMLVSSSWDGDVVRWE 468 (491)
Q Consensus 437 ~~h~~~v~~~~~s~-----------------------------------~~-------------~~l~s~~~Dg~i~iw~ 468 (491)
++|.+.|..|+|.| ++ -.|.+.+.|-.+.+||
T Consensus 371 qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWD 450 (636)
T KOG2394|consen 371 QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWD 450 (636)
T ss_pred cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEe
Confidence 99999999999983 01 1467788899999999
Q ss_pred CCCCCCCC
Q 011216 469 FPGNGEAA 476 (491)
Q Consensus 469 ~~~~~~~~ 476 (491)
+......+
T Consensus 451 lteD~L~~ 458 (636)
T KOG2394|consen 451 LTEDVLVP 458 (636)
T ss_pred cchhhccc
Confidence 98765443
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1e-14 Score=138.91 Aligned_cols=302 Identities=15% Similarity=0.127 Sum_probs=203.3
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC-Cccc
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTME 204 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~-~~~~ 204 (491)
=.++.+++.|.+...... ..+.+|+..++. ..........|...+++.++||++++++++..||.|.+|.--. ....
T Consensus 163 ~~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHM-CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEEe-eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 467889999987777754 468899988743 1112223346666789999999999999999999999997543 1111
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCE
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 284 (491)
...... .-|...|.+++|+++|.+|++|+..+.+.+|.+.+++ .+-+..-.++|..+.++ +++.+
T Consensus 242 ~t~t~l-------------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS-~ds~~ 306 (792)
T KOG1963|consen 242 ETCTLL-------------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS-PDSDL 306 (792)
T ss_pred ccceEE-------------EecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc-CCCCe
Confidence 111111 1356699999999999999999999999999999998 45556678899999998 88888
Q ss_pred EEEEeCCCeEEEEeCccccCCCcceeee--------ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVL--------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 285 l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
.+....|+.|.+......... ..+..+ ....+-.+.++++|..+.++-.+..|.|.+||+-+........
T Consensus 307 ~sl~~~DNqI~li~~~dl~~k-~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~- 384 (792)
T KOG1963|consen 307 YSLVLEDNQIHLIKASDLEIK-STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ- 384 (792)
T ss_pred EEEEecCceEEEEeccchhhh-hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE-
Confidence 889999999999876422111 111111 1123446778899977788889999999999998744322110
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec--------CC--eEEEEE
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------DS--CVYVYD 426 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------dg--~i~iwd 426 (491)
+.....+.............+.+..|.+++++-. || .+++|-
T Consensus 385 ----------------------------v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 385 ----------------------------VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred ----------------------------EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 0001111111112222233345556888888632 33 578897
Q ss_pred CCCccEE----EEe-cCCCCCeeeeEecC-CCC-eEEEEECCCcEEEecCCCCCC
Q 011216 427 LVSGEQV----AAL-KYHTSPVRDCSWHP-SQP-MLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 427 ~~~~~~~----~~~-~~h~~~v~~~~~s~-~~~-~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
......- ..+ ..|...+...++.+ ... ..++++.||.++||.+.....
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n 491 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN 491 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc
Confidence 6544322 222 36776666666554 333 899999999999999966544
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.4e-15 Score=145.45 Aligned_cols=214 Identities=17% Similarity=0.145 Sum_probs=145.1
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC---CeEEEEECCCCeeeEEEe
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~ 266 (491)
+..|.+||.+......+. .|...+.+.+|+|||+.|+.++.+ ..|++||+.+++... +.
T Consensus 183 ~~~i~i~d~dg~~~~~lt-----------------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~ 244 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVN-----------------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA 244 (429)
T ss_pred eEEEEEECCCCCCceEec-----------------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee
Confidence 368999998765532221 133478899999999999887653 469999998875422 22
Q ss_pred ccCCCeEEEEEecCCCCEEEEE-eCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEee
Q 011216 267 AHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWD 344 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd 344 (491)
...+....++|+ |+++.|+.+ +.+|.+.||.+.. .......+..+...+....|+|||+.|+..+ .++...||+
T Consensus 245 ~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 245 SFRGHNGAPAFS-PDGSRLAFASSKDGVLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred cCCCccCceeEC-CCCCEEEEEEecCCcEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 222334568998 778777665 4688766664321 2233455666777788999999999877655 577888888
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 424 (491)
+.... .....+ .+. . +.+.|+|||++|+.++.++ +.+
T Consensus 321 ~~~~~---------------------------------~~~~~l-~~~------~--~~~~~SpDG~~ia~~~~~~-i~~ 357 (429)
T PRK01742 321 MSASG---------------------------------GGASLV-GGR------G--YSAQISADGKTLVMINGDN-VVK 357 (429)
T ss_pred EECCC---------------------------------CCeEEe-cCC------C--CCccCCCCCCEEEEEcCCC-EEE
Confidence 65421 111111 111 0 3467899999999887765 666
Q ss_pred EECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 425 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 425 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
||+.+++.......+ ....++|+|||++|+.++.+|.+.+|.+.
T Consensus 358 ~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 358 QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 999888765333322 34678899999999999999988888763
No 212
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.9e-17 Score=144.29 Aligned_cols=247 Identities=19% Similarity=0.221 Sum_probs=165.9
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRE 241 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~ 241 (491)
...+|.+.|+++.|+.+|.+|++|+.|-.+.|||.-..+...... .||...|.++.|-| +.+.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------TgHtaNIFsvKFvP~tnnri 109 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------TGHTANIFSVKFVPYTNNRI 109 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------cccccceeEEeeeccCCCeE
Confidence 457899999999999999999999999999999987555443322 37888999999999 5678
Q ss_pred EEEEecCCeEEEEECCCC----------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc----
Q 011216 242 LVAGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---- 307 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---- 307 (491)
+++|..|..|+++|+... .....+..|...|..++..|...+.+.+++.||+|+-+|+|.......
T Consensus 110 v~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 110 VLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccc
Confidence 999999999999999842 234455679999999999866669999999999999999984321110
Q ss_pred --ceeeeccccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccc-cCcccceeeceeecCCCCcccccCCCCC
Q 011216 308 --PAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCN-LGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 308 --~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
.+..+....-...++..+|. ..+|++|+.|-..++||.+......... ....+...+.+++.+ ..+ .
T Consensus 190 ~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-------f~p--~ 260 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-------FSP--G 260 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe-------ecC--c
Confidence 11111222234678889985 4678999999999999976532221110 000011111111110 000 0
Q ss_pred eeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
.+....+ .......+....+|+|+|.-|++.-..-.|+++|+..++....+
T Consensus 261 hlkn~~g--n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 261 HLKNSQG--NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cccCccc--ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0000111 11222334455578999988887777778999999887765443
No 213
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-15 Score=129.22 Aligned_cols=261 Identities=13% Similarity=0.148 Sum_probs=169.3
Q ss_pred CCccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe----c
Q 011216 116 GPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----M 189 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~--dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~----~ 189 (491)
....+.++...++.++|.. ....+.+|+.||+|++||+.................+..+++..-.++.+++|. .
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s 141 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRS 141 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence 4456678888899999977 356788999999999999988655544433333234667777766778888775 3
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCee---eEEE
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL---SLRI 265 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~---~~~~ 265 (491)
+-.|.+||+...+.. +.... ..|...|++++|+| +.++|++|+.||.|.+||+..... +...
T Consensus 142 ~A~v~lwDvR~~qq~-l~~~~-------------eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQL-LRQLN-------------ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred ceEEEEEEeccccch-hhhhh-------------hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh
Confidence 568999999876542 11111 24777999999999 567999999999999999976532 2333
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc------------cccEEEEEEcCCCCEEEE
Q 011216 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------LEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~i~~i~~sp~~~~l~~ 333 (491)
..|...|.++.|..+.-..|.+-+...+..+|++. .+.....+... ...+.......+...++.
T Consensus 208 iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele----~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l 283 (376)
T KOG1188|consen 208 INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE----DGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCAL 283 (376)
T ss_pred hcccceeeeeeeecCCcceEEEEEccCceeEEEcc----CCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEE
Confidence 46778899999985544568899999999999997 33332222211 011111112234455555
Q ss_pred eeC-CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcE
Q 011216 334 NGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 334 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
++. -+...++-+........ .+.+..+.++.. ..+.+..|...+.+
T Consensus 284 ~g~~~n~~~~~~~~~~~s~~~----------------------------~~~~a~l~g~~~-----eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 284 AGTDSNKGTIFPLVDTSSGSL----------------------------LTEPAILQGGHE-----EIVRDILFDVKNDV 330 (376)
T ss_pred eccccCceeEEEeeecccccc----------------------------cCccccccCCcH-----HHHHHHhhhcccce
Confidence 554 56666665543111110 133344444221 11122233446889
Q ss_pred EEEEecCCeEEEEEC
Q 011216 413 IYTGSHDSCVYVYDL 427 (491)
Q Consensus 413 l~~g~~dg~i~iwd~ 427 (491)
+++|++||.+.+|..
T Consensus 331 l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKV 345 (376)
T ss_pred eeccCCCceEEEEec
Confidence 999999999999985
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2e-14 Score=123.25 Aligned_cols=318 Identities=13% Similarity=0.115 Sum_probs=190.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC-ceEEEEecCCeEEEEECCCCc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~~ 202 (491)
+..+.-++|++.-.-+|++..|-.|++|+-... .... + .......|++++|-|.+ +.|++|+. +-|.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~-L-ks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK-L-KSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce-e-cchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 456778899997777889999999999997763 2221 1 22333479999999966 55666654 558999875322
Q ss_pred c-ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 203 M-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
. .........+ ........|| .+|++++|.+||..+++++. +..|.|||..++..+.-.....+.+.-+.|+ |
T Consensus 174 n~~r~~~~~s~~---~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P 248 (445)
T KOG2139|consen 174 NANRNIRMMSTH---HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P 248 (445)
T ss_pred cccccccccccc---chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence 1 1111111111 1111222345 58999999999999999875 5789999999988765554556778999998 8
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
++.+|++++-|+..++|... ..........-.+.|...+|+|+|++|+.... |.-++|.+.-.........
T Consensus 249 dgd~lfaAt~davfrlw~e~----q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~---- 319 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQEN----QSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLR---- 319 (445)
T ss_pred CCCEEEEecccceeeeehhc----ccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccC----
Confidence 89999999999999999654 22222233333458999999999998765543 3345565543221111100
Q ss_pred ceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC--------eEEEEECCCccE
Q 011216 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--------CVYVYDLVSGEQ 432 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------~i~iwd~~~~~~ 432 (491)
..+.+......+... +....+. ..+....-+++|+|.|.+||+.-..+ .|.+||.+..-.
T Consensus 320 -~~~~k~~lliaDL~e--------~ti~ag~---~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 320 -PQSIKRVLLIADLQE--------VTICAGQ---RLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred -cccceeeeeeccchh--------hhhhcCc---ccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 000000000000000 0000010 01111223457888999999976644 467788755433
Q ss_pred EEEec-C--CCCCeeeeEecC---CCCeEEEEECCCcEEEecCCC
Q 011216 433 VAALK-Y--HTSPVRDCSWHP---SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ~~~~~-~--h~~~v~~~~~s~---~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
+.... + ......-++|+| ++.+|..+=.-|.+.-|.+.-
T Consensus 388 vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 388 VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 32221 1 111245566766 455666666678888777653
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=6.2e-15 Score=140.77 Aligned_cols=237 Identities=21% Similarity=0.256 Sum_probs=152.8
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---CeEEEEECCCCccccccceeccccccccccCC
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.++|.... ..... ..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+....
T Consensus 176 ~~L~~~D~dG~-~~~~l---~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~------------ 239 (427)
T PRK02889 176 YQLQISDADGQ-NAQSA---LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK------------ 239 (427)
T ss_pred cEEEEECCCCC-CceEe---ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC------------
Confidence 46777777543 22222 2334478899999999999987753 36999999988654332111
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EecCCeEEEE--ECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-CCCeEEEEe
Q 011216 223 DGGYSFGIFSLKFSTDGRELVA-GSSDDCIYVY--DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWD 298 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~-~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~i~iwd 298 (491)
+.+...+|+|||+.|+. .+.+|...|| |+..+. ...+..+........|+ ++++.|+..+ .+|...+|.
T Consensus 240 -----g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 240 -----GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred -----CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence 13557899999998874 5667765555 555444 44555555566778998 6777766555 456677776
Q ss_pred CccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC---cEEEeeCCCCCCccccccCcccceeeceeecCCCCcc
Q 011216 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
+.. .+.....+..+.......+|+|||++|+..+.++ .|.+||+.+..
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-------------------------- 363 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-------------------------- 363 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC--------------------------
Confidence 541 1122222222223344678999999998776654 59999987632
Q ss_pred cccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC---eEEEEECCCccEEEEecCCCCCeeeeEecCC
Q 011216 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 451 (491)
...+.... ....|.|+|||+.|+.++.++ .+++.++ ++.....+..+.+.+...+|+|-
T Consensus 364 ---------~~~lt~~~-------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 ---------VTALTDTT-------RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------eEEccCCC-------CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 11111111 113568999999998887654 4666777 56667777767788899999884
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.7e-13 Score=115.73 Aligned_cols=280 Identities=14% Similarity=0.193 Sum_probs=180.3
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce--eEEEeEeCCCCceEEE-EecC------CeEEEE
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--TVTDTSLSPDQRHLVY-ASMS------PIVHIV 196 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~l~~-~~~d------g~i~iw 196 (491)
....++|..|..-+++|.++| .+||+.+.-+... ....+.+ .+..+-| -.++|+. |+.+ +.|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 345599999999999998776 8999987521111 1111111 2222222 2344444 3332 479999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC-CCeeeEEEecc--CCCeE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAH--TSDVN 273 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~--~~~v~ 273 (491)
|=...+...... ...+|.++.+.++ .|++.- .+.|+||... +.+.++.+... ...+.
T Consensus 81 DD~k~~~i~el~-----------------f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 81 DDLKERCIIELS-----------------FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred ecccCcEEEEEE-----------------eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence 944333332222 2237999999866 466654 5679999997 45555555422 23344
Q ss_pred EEEEecCCCCEEEE-EeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCc-EEEeeCCCCCCc
Q 011216 274 TVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSN 351 (491)
Q Consensus 274 ~i~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~-i~iwd~~~~~~~ 351 (491)
+++-. .+..+|+. |-.-|.|+|-|+..... .....+.+|...|.+++.+-+|..+|+++..|+ |+|||..++
T Consensus 141 ~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g--- 214 (346)
T KOG2111|consen 141 SLCPT-SNKSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG--- 214 (346)
T ss_pred eecCC-CCceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---
Confidence 44432 33344444 34568999999972221 134678899999999999999999999999998 899999984
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
..+..++..... ...++++|||+..+||+++..|+|.|+.++...
T Consensus 215 -------------------------------~~l~E~RRG~d~----A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 -------------------------------TLLQELRRGVDR----ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -------------------------------cEeeeeecCCch----heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 445555433221 234667899999999999999999999876422
Q ss_pred ---E---------------------EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 432 ---Q---------------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 432 ---~---------------------~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
. +..++-..++..-++|-.+-+.++..+.||..+-+.+...
T Consensus 260 ~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~ 324 (346)
T KOG2111|consen 260 NTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK 324 (346)
T ss_pred CCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence 1 1112223456666788877566777778898877666554
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.4e-14 Score=136.43 Aligned_cols=234 Identities=18% Similarity=0.213 Sum_probs=154.1
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec---CCeEEEEECCCCccccccceeccccccccccCC
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.++|.+... .... ..+...+...+|+|||+.|+..+. +..|.+||+.+++...+..
T Consensus 182 ~~l~~~d~dg~~-~~~l---t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-------------- 243 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYL---TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-------------- 243 (435)
T ss_pred eEEEEECCCCCC-cEEE---ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence 478899986542 2222 234457999999999999998764 3689999998886543321
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EecCC--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC-CC--eEEE
Q 011216 223 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg--~i~i 296 (491)
+.+.+...+|+|||+.|+. .+.++ .|++||+.+++. ..+..+........|+ ++++.|+..+. +| .|.+
T Consensus 244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence 1124667899999998764 44444 488889988765 4455666667789998 67777776653 33 5777
Q ss_pred EeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC---CcEEEeeCCCCCCccccccCcccceeeceeecCCCC
Q 011216 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
+|+. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+....
T Consensus 319 ~d~~-----g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~------------------------ 369 (435)
T PRK05137 319 MNAD-----GSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG------------------------ 369 (435)
T ss_pred EECC-----CCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc------------------------
Confidence 7864 23333444344556778899999999876653 357788875421
Q ss_pred cccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC------CeEEEEECCCccEEEEecCCCCCeeeeE
Q 011216 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD------SCVYVYDLVSGEQVAALKYHTSPVRDCS 447 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~~~ 447 (491)
...+.... ....+.|+|||+.|+..+.+ ..++++|+..+.. ..+. ..+.+...+
T Consensus 370 -----------~~~lt~~~-------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p~ 429 (435)
T PRK05137 370 -----------ERILTSGF-------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDPA 429 (435)
T ss_pred -----------eEeccCCC-------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCcc
Confidence 11111100 12456889999998876543 3688889866554 4454 345577888
Q ss_pred ecCC
Q 011216 448 WHPS 451 (491)
Q Consensus 448 ~s~~ 451 (491)
|+|-
T Consensus 430 Wsp~ 433 (435)
T PRK05137 430 WSPL 433 (435)
T ss_pred cCCC
Confidence 8874
No 218
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.2e-15 Score=143.21 Aligned_cols=251 Identities=16% Similarity=0.224 Sum_probs=173.1
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCEEEEEecC
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSD 248 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~~~~~d 248 (491)
....+.|+|-...++++...-.|+|||.+.++....+...... ...|+.+.+-. |..++++|+.|
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-------------~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-------------DTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-------------CCccceeeeecccchhheeeeccC
Confidence 3566788998889999887889999999988875544433221 12688888876 55689999999
Q ss_pred CeEEEEECCCC-----eeeEEEec-------cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-cc
Q 011216 249 DCIYVYDLEAN-----KLSLRILA-------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GH 315 (491)
Q Consensus 249 g~i~vwd~~~~-----~~~~~~~~-------~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~ 315 (491)
|.|+||+-... +.+..+.+ ..+.-.-+.|....| +|++++.-..|+|||.. ....+..+. +.
T Consensus 1133 GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~----~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAH----KEQVVADIPYGS 1207 (1387)
T ss_pred ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecc----cceeEeecccCC
Confidence 99999975322 22222221 111223456764445 45555557899999986 334443333 33
Q ss_pred cccEEEEEEc-CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 316 LEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 316 ~~~i~~i~~s-p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
...|+++.-+ +.|+.+++|..||.|++||.+.... +..+..++.|...
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-------------------------------ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-------------------------------DSLVCVYREHNDV 1256 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCc-------------------------------cccceeecccCCc
Confidence 4456766543 3479999999999999999987332 2456777777765
Q ss_pred eeeEEEEecCcccCCCc-EEEEEecCCeEEEEECCCccEEE--EecCCC--C-CeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 395 RTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVA--ALKYHT--S-PVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~--~-~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
..+....+.. +|- -|++|+.||.|++||++...... .+..|. + ..+++..+++.+.+|+|+. +.|+||+
T Consensus 1257 ~~Iv~~slq~----~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1257 EPIVHLSLQR----QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred ccceeEEeec----CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 5555444443 332 59999999999999998743222 222333 3 5999999999999999998 9999999
Q ss_pred CCCCCCC
Q 011216 469 FPGNGEA 475 (491)
Q Consensus 469 ~~~~~~~ 475 (491)
+.++...
T Consensus 1332 ~~G~~l~ 1338 (1387)
T KOG1517|consen 1332 LSGEQLN 1338 (1387)
T ss_pred cChhhhc
Confidence 9876543
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=9.3e-14 Score=132.53 Aligned_cols=216 Identities=15% Similarity=0.086 Sum_probs=139.9
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECCCCeeeEEEecc
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~ 268 (491)
.|.+||.+......+.. +...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+...
T Consensus 180 ~l~~~d~dg~~~~~lt~-----------------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~ 241 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR-----------------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 241 (429)
T ss_pred eEEEEcCCCCCCEEeec-----------------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCC
Confidence 68899887665433322 2226889999999999887642 457999999887643 23233
Q ss_pred CCCeEEEEEecCCCCEEEEE-eCCC--eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-CcEEEe-
Q 011216 269 TSDVNTVCFGDESGHLIYSG-SDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKLW- 343 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~-s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-g~i~iw- 343 (491)
.+.+..+.|+ |+++.|+.. +.+| .|.+||+. .+. ...+..+...+....|+|||+.|+..+.+ +...||
T Consensus 242 ~~~~~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~----tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 242 PRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CCCcCCeEEC-CCCCEEEEEEcCCCCcEEEEEECC----CCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 3445678998 677766644 4455 58889986 333 34444455567889999999988877654 444444
Q ss_pred -eCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC---
Q 011216 344 -DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--- 419 (491)
Q Consensus 344 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--- 419 (491)
|+.+. ....+.... .....+.|+|||++|+..+.+
T Consensus 316 ~d~~~g-----------------------------------~~~~lt~~~------~~~~~~~~SpDG~~Ia~~~~~~g~ 354 (429)
T PRK03629 316 VNINGG-----------------------------------APQRITWEG------SQNQDADVSSDGKFMVMVSSNGGQ 354 (429)
T ss_pred EECCCC-----------------------------------CeEEeecCC------CCccCEEECCCCCEEEEEEccCCC
Confidence 55442 111111111 011345788999999876653
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCc---EEEecCCCCCC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPGNGE 474 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~---i~iw~~~~~~~ 474 (491)
..|++||+.+++.. .+.. ........|+|||++|+.++.++. +.++++.....
T Consensus 355 ~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~ 410 (429)
T PRK03629 355 QHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 410 (429)
T ss_pred ceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe
Confidence 36889999888644 3332 123457899999999999888765 67778765443
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.1e-14 Score=139.66 Aligned_cols=234 Identities=22% Similarity=0.212 Sum_probs=154.1
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---CeEEEEECCCCccccccceeccccccccccCC
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.+||..... ...+ ..+...+...+|+|||+.|++++.+ ..|.+||+.+++...+....
T Consensus 184 ~~l~i~D~~g~~-~~~l---t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~------------ 247 (433)
T PRK04922 184 YALQVADSDGYN-PQTI---LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR------------ 247 (433)
T ss_pred EEEEEECCCCCC-ceEe---ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC------------
Confidence 468999986542 2222 2334478899999999999988744 47999999887654332211
Q ss_pred CCCceecEEEEEEcCCCCEEEE-EecCC--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-CCCe--EEE
Q 011216 223 DGGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKV 296 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~--i~i 296 (491)
+...+.+|+|||+.|+. .+.+| .|++||+.+++. ..+..+.......+|+ ++++.|+.++ .+|. |.+
T Consensus 248 -----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 248 -----GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred -----CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEE
Confidence 13446799999997764 44454 699999988765 4455555556788998 6777776665 4555 555
Q ss_pred EeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC---cEEEeeCCCCCCccccccCcccceeeceeecCCCC
Q 011216 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
+|+. .+. ...+..+......++|+|||++|+..+.++ .|.+||+.+..
T Consensus 321 ~dl~----~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~------------------------ 371 (433)
T PRK04922 321 VAAS----GGS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS------------------------ 371 (433)
T ss_pred EECC----CCC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC------------------------
Confidence 5654 222 223322333445789999999998765443 58999987632
Q ss_pred cccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC---CeEEEEECCCccEEEEecCCCCCeeeeEecC
Q 011216 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 450 (491)
...+.... ....+.|+|||++|+..+.+ +.|+++++. +.....+..+.+.+...+|+|
T Consensus 372 -----------~~~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 372 -----------VRTLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -----------eEECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 11111110 11246789999988877663 468888884 555666766677888899987
No 221
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=9.1e-14 Score=119.26 Aligned_cols=250 Identities=19% Similarity=0.167 Sum_probs=161.4
Q ss_pred CCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE-----------EEEeeccCCceeEEEeEeCCCCceEEEEec
Q 011216 122 QTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI-----------QKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~-----------~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 189 (491)
.-...|.|++|-|.+ +-|++|+..| |.+|..+..... .+.....+| .+|+++.|.+||..|++++.
T Consensus 138 ~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 138 VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred hhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 346789999999965 5677787664 999987642111 112233455 48999999999999999886
Q ss_pred C-CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc
Q 011216 190 S-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 190 d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 268 (491)
+ ..|.|||.+++....+.... .+.++-+.|||||.+|+++.-|+..++|+...........-.
T Consensus 216 gsssi~iWdpdtg~~~pL~~~g----------------lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg 279 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKG----------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG 279 (445)
T ss_pred CcceEEEEcCCCCCcccccccC----------------CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc
Confidence 4 68999999999876655211 126888999999999999999999999966544333334444
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC--Cc---------ceeeec------c---ccccEEEEEEcCCC
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GK---------PAGVLM------G---HLEGITFIDSRGDG 328 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~---------~~~~~~------~---~~~~i~~i~~sp~~ 328 (491)
.+.|...+|+|....+|++.+..-.+ |.+...... .. .+..+. + -.+++.+++|.|.|
T Consensus 280 sgrvqtacWspcGsfLLf~~sgsp~l--ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 280 SGRVQTACWSPCGSFLLFACSGSPRL--YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred CCceeeeeecCCCCEEEEEEcCCceE--EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC
Confidence 56999999985444455555544433 333211100 00 000110 1 14568899999999
Q ss_pred CEEEEeeCCC--------cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc--ccceeeeeE
Q 011216 329 RYLISNGKDQ--------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK--GHSVLRTLI 398 (491)
Q Consensus 329 ~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 398 (491)
.+|++.-..+ .|.+||.+... ...+. +........
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp-----------------------------------~vels~cg~i~ge~P~ 402 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSP-----------------------------------PVELSYCGMIGGEYPA 402 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccC-----------------------------------ceEEEecccccCCCCc
Confidence 9999876544 36667766521 11111 111111122
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
...|.+.+ .++.+|.++-..|.+.-|++
T Consensus 403 ~IsF~pl~-n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 403 YISFGPLK-NEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eEEeeecc-cCCcEEEEEeccCceEeeee
Confidence 33455554 47888888888898888876
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.9e-13 Score=123.98 Aligned_cols=281 Identities=15% Similarity=0.213 Sum_probs=178.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-----c-----CCeE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-----M-----SPIV 193 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-----~-----dg~i 193 (491)
..++...++|++|+++|.+. +..++|++...+..+.... .. .+.++.|+|-+.+|.+-- . ...+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~----~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE----LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec----cc-eeeeeeecccccccccccccccccCCCCCCCce
Confidence 34477889999999888774 5689999998874222221 11 589999999999988731 1 2357
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeE
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 273 (491)
.+|+++++.....+.... . .-++..|++|.. |++--..+.+++|++...+.+.. .-|...|+
T Consensus 108 ~v~~vet~~~~s~~q~k~-Q---------------~~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~ 169 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQKKM-Q---------------NGWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQH-KLSVSGIT 169 (566)
T ss_pred eeeeeccceehhheehhh-h---------------cCcccccccchh-hhhhhhcceEEEEecCCccceee-eeecccee
Confidence 899998844332222111 1 114678888775 33333456788888876443221 13556677
Q ss_pred EEEEecC-CCCEEEE-----EeCCCeEEEEeCccccC-------------------------------------------
Q 011216 274 TVCFGDE-SGHLIYS-----GSDDNLCKVWDRRCLNV------------------------------------------- 304 (491)
Q Consensus 274 ~i~~~~~-~~~~l~s-----~s~dg~i~iwd~~~~~~------------------------------------------- 304 (491)
.+.++|. ....+++ .+.-+.|+||.......
T Consensus 170 ~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYG 249 (566)
T KOG2315|consen 170 MLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYG 249 (566)
T ss_pred eEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccc
Confidence 7777643 2223332 23334566665430000
Q ss_pred ---------CCcceeeeccccccEEEEEEcCCCCEEEE--eeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCC
Q 011216 305 ---------KGKPAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 305 ---------~~~~~~~~~~~~~~i~~i~~sp~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
.+.....-....++|+++.|+|+++.+++ |-+--.+.|||++.
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-------------------------- 303 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-------------------------- 303 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC--------------------------
Confidence 01111111123678999999999977654 45567789999875
Q ss_pred cccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec---CCeEEEEECCCccEEEEecCCCCCeeeeEecC
Q 011216 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 450 (491)
.++..+.... ...+-|+|.|++|+.++. .|.|.|||+.+.+++..+..-. -+-+.|+|
T Consensus 304 ---------~~v~df~egp--------RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~P 364 (566)
T KOG2315|consen 304 ---------KPVFDFPEGP--------RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSP 364 (566)
T ss_pred ---------CEeEeCCCCC--------ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcC
Confidence 3444332211 112257778999998776 4799999999999988887544 35579999
Q ss_pred CCCeEEEEEC------CCcEEEecCCCCC
Q 011216 451 SQPMLVSSSW------DGDVVRWEFPGNG 473 (491)
Q Consensus 451 ~~~~l~s~~~------Dg~i~iw~~~~~~ 473 (491)
||++|+|+.. |+.++||++.+..
T Consensus 365 dGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEecCce
Confidence 9999998864 7889999998754
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2e-13 Score=131.15 Aligned_cols=217 Identities=15% Similarity=0.110 Sum_probs=143.6
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECCCCeeeEEEec
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~ 267 (491)
..|.++|.+......+. .|...+.+.+|+|||+.|+..+. +..|++||+.+++. ..+..
T Consensus 182 ~~l~~~d~dg~~~~~lt-----------------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~ 243 (435)
T PRK05137 182 KRLAIMDQDGANVRYLT-----------------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGN 243 (435)
T ss_pred eEEEEECCCCCCcEEEe-----------------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeec
Confidence 37888887655443222 13347899999999999888764 46899999988865 34555
Q ss_pred cCCCeEEEEEecCCCCEE-EEEeCCCe--EEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CC--cEE
Q 011216 268 HTSDVNTVCFGDESGHLI-YSGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIK 341 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l-~s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg--~i~ 341 (491)
+.+.+....|+ ++++.| ++.+.++. |.+||+. . .....+..+........|+|||+.|+..+. +| .|.
T Consensus 244 ~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~----~-~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFS-PDGRKVVMSLSQGGNTDIYTMDLR----S-GTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEEC-CCCCEEEEEEecCCCceEEEEECC----C-CceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEE
Confidence 66777889998 566655 56666665 6677875 3 334556556666778899999999887664 33 577
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC--
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-- 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-- 419 (491)
++|+.... ...+.... .....+.|+|||++|+....+
T Consensus 318 ~~d~~g~~-----------------------------------~~~lt~~~------~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 318 VMNADGSN-----------------------------------PRRISFGG------GRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred EEECCCCC-----------------------------------eEEeecCC------CcccCeEECCCCCEEEEEEcCCC
Confidence 77866521 11111111 012345788999999887653
Q ss_pred -CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC------CcEEEecCCCCCC
Q 011216 420 -SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD------GDVVRWEFPGNGE 474 (491)
Q Consensus 420 -g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D------g~i~iw~~~~~~~ 474 (491)
..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+.+ ..++++++.++..
T Consensus 357 ~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 357 QFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred ceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 3688999865543 3333 23357789999999988765543 2577778766543
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.4e-15 Score=132.71 Aligned_cols=265 Identities=18% Similarity=0.212 Sum_probs=189.3
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL 242 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l 242 (491)
+..|.+.|..+.|...|..|++++.|..|.+||...++....+. .||...|....|-| +.+.+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------------SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------------SGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------------cccccchhhhhccCCCCCcCc
Confidence 46788899999999999999999999999999998876543322 36888888888988 44679
Q ss_pred EEEecCCeEEEEECCCCee---eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc--
Q 011216 243 VAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-- 317 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-- 317 (491)
++++.||.|++=.+..... ...+..|.++|.-++.-|....-|++++.|+.+.-+|+++........ .-..+..
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~ 281 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKER 281 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccc
Confidence 9999999999987644332 345568999999999988888999999999999999998544332222 2233333
Q ss_pred -cEEEEEEcCCCC-EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee
Q 011216 318 -GITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 -~i~~i~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
....++..|... .+++++.|..+++||.+........ ..+..+-.+....
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n----------------------------~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN----------------------------GVLDKFCPHHLVE 333 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc----------------------------chhhhcCCccccc
Confidence 567888888654 7999999999999999875433221 1222222222111
Q ss_pred eeEEEEecCcccCCCcEEEEEecCCeEEEEECCC--c----------cEEEE-ecCCCC--CeeeeEe-cCCCCeEEEEE
Q 011216 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--G----------EQVAA-LKYHTS--PVRDCSW-HPSQPMLVSSS 459 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~--~----------~~~~~-~~~h~~--~v~~~~~-s~~~~~l~s~~ 459 (491)
.....+.+.+|+.++.-|.+...|-.|+++.-.. | ..+.. +++|.. .|..+-| -|...++++|+
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 1111223346676676677777788899996432 2 12233 678864 4666665 57788999999
Q ss_pred CCCcEEEecCCCCC
Q 011216 460 WDGDVVRWEFPGNG 473 (491)
Q Consensus 460 ~Dg~i~iw~~~~~~ 473 (491)
.-|.|.||+-.+++
T Consensus 414 DCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGE 427 (559)
T ss_pred ccceEEEEecchhH
Confidence 99999999977654
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.64 E-value=4.6e-15 Score=133.43 Aligned_cols=187 Identities=19% Similarity=0.257 Sum_probs=132.2
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEeec--cCCceeEEEeEeCCCC-ceEEEEecCCeEEEEECCCCccccccce
Q 011216 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 133 s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (491)
.|.|--|++|...|.|.+.|.... .+.++... .-....|+++.|-|.+ ..++++-.+|.+.++|..-.....-...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~ 260 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSY 260 (636)
T ss_pred CCCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcc
Confidence 345566888888899988886542 11111110 1112479999999965 4556667789999997632111111111
Q ss_pred eccccccccccCCCC------------CceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 210 TEIHDGLDFSAADDG------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~------------~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
.....+-.|...... --.+.|..++|+|||++||+.+.||.++|+|..+.+++..++..-+...|++|
T Consensus 261 ~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred cccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 111111111111000 01237889999999999999999999999999998887777777788999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
+ ||+++|++|++|-.|.||.+. ..+.+..-++|...|..|+|.
T Consensus 341 S-PDGKyIvtGGEDDLVtVwSf~----erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 341 S-PDGKYIVTGGEDDLVTVWSFE----ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred c-CCccEEEecCCcceEEEEEec----cceEEEeccccccceeeEeec
Confidence 8 899999999999999999997 888888899999999999998
No 226
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=7.4e-16 Score=136.01 Aligned_cols=232 Identities=17% Similarity=0.192 Sum_probs=184.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
....+.++.+|++|+.|+..|.|..+|..++++...+.+.+ .|.++.|-.+.+++|++ ....
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-----------------tv~Dv~~LHneq~~AVA-QK~y 192 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVME-----------------TVRDVTFLHNEQFFAVA-QKKY 192 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhh-----------------hhhhhhhhcchHHHHhh-hhce
Confidence 46778999999999999999999999999998876665544 68889999888877776 4567
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
++|||-. |..+..+..| ..|..+.|. |..-+|++++..|.++.-|+. .++.+..+..-.+.+..+.-+|-...
T Consensus 193 ~yvYD~~-GtElHClk~~-~~v~rLeFL-PyHfLL~~~~~~G~L~Y~DVS----~GklVa~~~t~~G~~~vm~qNP~NaV 265 (545)
T KOG1272|consen 193 VYVYDNN-GTELHCLKRH-IRVARLEFL-PYHFLLVAASEAGFLKYQDVS----TGKLVASIRTGAGRTDVMKQNPYNAV 265 (545)
T ss_pred EEEecCC-CcEEeehhhc-Cchhhhccc-chhheeeecccCCceEEEeec----hhhhhHHHHccCCccchhhcCCccce
Confidence 9999964 4555556444 578999998 777899999999999999998 88888888888888999999998889
Q ss_pred EEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC
Q 011216 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
+-+|...|+|.+|..... .++..+-.|... +.++++.++|
T Consensus 266 ih~GhsnGtVSlWSP~sk----------------------------------ePLvKiLcH~g~------V~siAv~~~G 305 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSK----------------------------------EPLVKILCHRGP------VSSIAVDRGG 305 (545)
T ss_pred EEEcCCCceEEecCCCCc----------------------------------chHHHHHhcCCC------cceEEECCCC
Confidence 999999999999998763 233333344422 2334677899
Q ss_pred cEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+|+++.+.|..++|||++....+.++.. .-+...+++|..| +++++....|.||.=.
T Consensus 306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDA 362 (545)
T ss_pred cEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhh
Confidence 9999999999999999998887777654 4567888998766 3344455679999743
No 227
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=1.3e-14 Score=119.12 Aligned_cols=251 Identities=16% Similarity=0.129 Sum_probs=161.2
Q ss_pred Ccccc-CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-----Cc----eEEE
Q 011216 117 PWPVD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QR----HLVY 186 (491)
Q Consensus 117 ~~~~~-~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~----~l~~ 186 (491)
...++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++.-+..+.... -.++++.|.+. ++ .+++
T Consensus 48 ~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S------i~~nslgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 48 LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS------IVVNSLGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee------eeccccccccceeccCCCcchhheec
Confidence 34445 67888999999998 457788899999999998763333211 13455555442 11 1111
Q ss_pred EecCC-eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCC--EEEEEecCCeEEEEECCCCeee
Q 011216 187 ASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR--ELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 187 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~--~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
-+... .+++-|......... ......+..+.+.|..+.. ++. .+++|.++|.|.+||+.++..+
T Consensus 121 p~rgsde~h~~D~g~~tqv~i------------~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~ 188 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQI------------ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI 188 (323)
T ss_pred CCcccchhhhhccCccceeEc------------cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee
Confidence 11100 111222111111111 1111122334677766543 333 5677888999999999987433
Q ss_pred ----------EEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEE
Q 011216 263 ----------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 263 ----------~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~ 332 (491)
.....|..+|.++.|. +..+.=++|+.+-.+..|++.........-..+.-...+|..+...||++.+|
T Consensus 189 ~~~~~~~kv~~~~ash~qpvlsldya-s~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 189 IQLPQSSKVESPNASHKQPVLSLDYA-SSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILA 267 (323)
T ss_pred eccccccccccchhhccCcceeeeec-hhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEe
Confidence 3334689999999996 44444567888888999998632112222223333456788999999999999
Q ss_pred EeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcE
Q 011216 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
+++.|+.|+||..+++ +++..++-|.. .+.+.+|+|+..+
T Consensus 268 TAGWD~RiRVyswrtl----------------------------------~pLAVLkyHsa------gvn~vAfspd~~l 307 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTL----------------------------------NPLAVLKYHSA------GVNAVAFSPDCEL 307 (323)
T ss_pred ecccCCcEEEEEeccC----------------------------------Cchhhhhhhhc------ceeEEEeCCCCch
Confidence 9999999999999984 56666666662 2334478889999
Q ss_pred EEEEecCCeEEEEEC
Q 011216 413 IYTGSHDSCVYVYDL 427 (491)
Q Consensus 413 l~~g~~dg~i~iwd~ 427 (491)
+|+++.|++|-+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.63 E-value=3.6e-13 Score=114.19 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=174.6
Q ss_pred CCceEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceE-EEEecCCeEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVA-GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~~~~~dg~i~iwd~~~~ 201 (491)
-+.|.-+.|+.|..+++. ...++.|.+|++...+-..++. ....++.+++|||||+.| .+...+-.|.+|.+.+.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~ 124 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ 124 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccc
Confidence 356777889988876654 5678899999998765444433 333479999999999655 45667889999999887
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC---------------------------------
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------------------------- 248 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d--------------------------------- 248 (491)
+...+.-... .+..++|+|||++.+.+++.
T Consensus 125 ~~~~~~~pK~-----------------~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs 187 (447)
T KOG4497|consen 125 KGYLLPHPKT-----------------NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS 187 (447)
T ss_pred eeEEeccccc-----------------CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC
Confidence 7644433222 34566777777766655421
Q ss_pred ---CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccC---------------------
Q 011216 249 ---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------------- 304 (491)
Q Consensus 249 ---g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------------------- 304 (491)
..+.+||---.-.+..+ .-.-.+..++|+ |.+++|+.|+.|+.+++.+--+...
T Consensus 188 Pdg~~laVwd~~Leykv~aY-e~~lG~k~v~ws-P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 188 PDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWS-PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred CCCcEEEEecchhhheeeee-eeccceeEEEec-cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 12334442211111111 122467889998 7889999999999998855210000
Q ss_pred -----------------------------------------CCcceeeeccccccEEEEEEcCCCCEEEEeeC--CCcEE
Q 011216 305 -----------------------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIK 341 (491)
Q Consensus 305 -----------------------------------------~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~--dg~i~ 341 (491)
..++...+....-.+.-++|++|..++++-.. -+.+-
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW 345 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW 345 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence 00000111112334567899999999887643 35799
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCe
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 421 (491)
+||++..+..... ... ..+... .|.|....|+.+.....
T Consensus 346 ~Wdlq~l~l~avL----------------------------------iQk---~piraf----~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 346 LWDLQNLKLHAVL----------------------------------IQK---HPIRAF----EWDPGRPRLVVCTGKSR 384 (447)
T ss_pred EEechhhhhhhhh----------------------------------hhc---cceeEE----EeCCCCceEEEEcCCce
Confidence 9999874322111 000 112222 35556777777777778
Q ss_pred EEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcE
Q 011216 422 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i 464 (491)
+++|...-...+.. ....-.|..++|..+|..++-.+.|...
T Consensus 385 LY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 385 LYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 99999855444433 3334679999999999999999988643
No 229
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-13 Score=136.15 Aligned_cols=262 Identities=14% Similarity=0.153 Sum_probs=166.9
Q ss_pred eccCCceeEEEeEeCCCC-ceEEEEecCCeEEEEECCCCccc-cccceeccccccccccCCCCCceecEEEEEEcCCCCE
Q 011216 164 LAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 241 (491)
..+.|...|..++.++.. .++++|+.||+|++|+...-... ...... +.+.. -...+.++...+.+..
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~-----ltys~-----~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE-----LTYSP-----EGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeee-----EEEec-----cCCceEEEEeccCCCe
Confidence 345677778888887755 99999999999999998643221 111000 00110 1237888999999999
Q ss_pred EEEEecCCeEEEEECCCCee-------eEEEecc-CCCeE-EEEEecCCCC-EEEEEeCCCeEEEEeCccccCCCcceee
Q 011216 242 LVAGSSDDCIYVYDLEANKL-------SLRILAH-TSDVN-TVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGV 311 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~~-------~~~~~~~-~~~v~-~i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 311 (491)
+|+++.||.|.+.+++.... .+....+ .+.+. .-+|...... .++.+..-+.|..||++ .......
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r----~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR----MRHDAWR 1188 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch----hhhhHHh
Confidence 99999999999999876211 1111111 23333 3344323344 78888899999999998 3333333
Q ss_pred e--ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc
Q 011216 312 L--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (491)
Q Consensus 312 ~--~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
+ ....+.|++++.+|.+.+++.|...|.+.+||+|-. .++..+.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~----------------------------------~~i~sw~ 1234 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR----------------------------------VPILSWE 1234 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC----------------------------------ceeeccc
Confidence 2 234578999999999999999999999999999863 2333332
Q ss_pred ccceeeeeEEEEecCcccCCCcEEEE-Ee-cCCeEEEEECCCccEEEEecCC-------------------CCCeeeeEe
Q 011216 390 GHSVLRTLIRCHFSPVYSTGQKYIYT-GS-HDSCVYVYDLVSGEQVAALKYH-------------------TSPVRDCSW 448 (491)
Q Consensus 390 ~~~~~~~~~~~~~~~~~s~~~~~l~~-g~-~dg~i~iwd~~~~~~~~~~~~h-------------------~~~v~~~~~ 448 (491)
-... ..+.....++. .|.....++ ++ ..+.|-+|++.+|.....+... .-.....++
T Consensus 1235 ~P~~-~~i~~v~~~~~-~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~ 1312 (1431)
T KOG1240|consen 1235 HPAR-APIRHVWLCPT-YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGV 1312 (1431)
T ss_pred Cccc-CCcceEEeecc-CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeec
Confidence 1111 11222222222 222344444 44 4778999999988665555322 111223344
Q ss_pred cCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 449 HPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 449 s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
..-+..+.+|+.|..|+.||.......
T Consensus 1313 ~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1313 CEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCCceeeecCCccceeeccCCCcccc
Confidence 445568999999999999998876543
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.2e-13 Score=119.67 Aligned_cols=249 Identities=19% Similarity=0.190 Sum_probs=171.6
Q ss_pred eEEEeEeCCCCc--eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC
Q 011216 171 TVTDTSLSPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 171 ~v~~l~~sp~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d 248 (491)
.|..++|.-+++ .|...+.+..+..+.+..........- .........+|..++.. |+ .|++|-.+
T Consensus 57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~----------~~~~~l~~~~I~gl~~~-dg-~Litc~~s 124 (412)
T KOG3881|consen 57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD----------AKTVSLGTKSIKGLKLA-DG-TLITCVSS 124 (412)
T ss_pred hhhhheeecCCceeEeeccccCcccccccccCCcccccccc----------ccccccccccccchhhc-CC-EEEEEecC
Confidence 567777765543 344343555566666554443222100 00001122355555554 34 58888899
Q ss_pred CeEEEEECCCCe----eeEEEeccCCCeEEEEEecCCCCEEEEEeCC--CeEEEEeCccccCCCcceeeecc-------c
Q 011216 249 DCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKPAGVLMG-------H 315 (491)
Q Consensus 249 g~i~vwd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~-------~ 315 (491)
|.+.+|....+. .+..+.. ...+..+.-++....++++|+.. ..+.+||+. ..+.+..-.. -
T Consensus 125 G~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle----~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 125 GNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLE----QSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred CcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecc----cceeeeeccCCCCccccc
Confidence 999999988443 2233322 35567777777778889999999 889999997 3333322211 1
Q ss_pred --cccEEEEEEcCC--CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc
Q 011216 316 --LEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 316 --~~~i~~i~~sp~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
.-.++.+.|-+. ...|++++.-+.+++||.+... +++..+.-.
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---------------------------------RPV~~fd~~ 246 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---------------------------------RPVAQFDFL 246 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---------------------------------cceeEeccc
Confidence 123567888877 7899999999999999998743 455555544
Q ss_pred ceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEE-ecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.... .+....|++++|++|..-|.+..+|++.++.+.. +++-.+.|+++..+|.+++|+++|-|..|+|+|+.
T Consensus 247 E~~i------s~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 247 ENPI------SSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cCcc------eeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 3222 2224566899999999999999999999998877 88999999999999999999999999999999998
Q ss_pred CCCCC
Q 011216 471 GNGEA 475 (491)
Q Consensus 471 ~~~~~ 475 (491)
+....
T Consensus 321 trkll 325 (412)
T KOG3881|consen 321 TRKLL 325 (412)
T ss_pred cchhh
Confidence 85443
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2e-13 Score=130.91 Aligned_cols=216 Identities=19% Similarity=0.131 Sum_probs=141.0
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECCCCeeeEEEec
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~ 267 (491)
..|.+||........+.. +...+.+.+|+|||+.|+..+. ...|++||+.+++.. .+..
T Consensus 184 ~~l~i~D~~g~~~~~lt~-----------------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~ 245 (433)
T PRK04922 184 YALQVADSDGYNPQTILR-----------------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVAS 245 (433)
T ss_pred EEEEEECCCCCCceEeec-----------------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eecc
Confidence 368899986554332221 2236888999999999998764 346999999887653 3334
Q ss_pred cCCCeEEEEEecCCCCEE-EEEeCCC--eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CCc--EE
Q 011216 268 HTSDVNTVCFGDESGHLI-YSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IK 341 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l-~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg~--i~ 341 (491)
..+...+..|+ ++++.| ++.+.+| .|++||+. .+. ...+..+......++|+|||+.|+..+. +|. |.
T Consensus 246 ~~g~~~~~~~S-pDG~~l~~~~s~~g~~~Iy~~d~~----~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 246 FRGINGAPSFS-PDGRRLALTLSRDGNPEIYVMDLG----SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred CCCCccCceEC-CCCCEEEEEEeCCCCceEEEEECC----CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 45555678998 666655 4556555 58999986 333 3445555555677899999998887664 444 56
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC-
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS- 420 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg- 420 (491)
++|+.+.. ...+.... .....+.|||||++|+..+.++
T Consensus 320 ~~dl~~g~-----------------------------------~~~lt~~g------~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 320 RVAASGGS-----------------------------------AERLTFQG------NYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred EEECCCCC-----------------------------------eEEeecCC------CCccCEEECCCCCEEEEEECCCC
Confidence 66665421 11111110 0112457899999998876543
Q ss_pred --eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC---CcEEEecCCCCC
Q 011216 421 --CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGNG 473 (491)
Q Consensus 421 --~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D---g~i~iw~~~~~~ 473 (491)
.|++||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++....
T Consensus 359 ~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 359 QYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred ceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 6999999887765 443 33345678999999987776653 357777776543
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.6e-13 Score=129.66 Aligned_cols=194 Identities=20% Similarity=0.211 Sum_probs=128.1
Q ss_pred cEEEEEEcCCCCEEEEEecC---CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE-EEeCCCeEEEEeCccccC
Q 011216 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNV 304 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~ 304 (491)
.+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+.+.+..|+ ++++.|+ +.+.+|...||.+..
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~--- 271 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNA--- 271 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEEC-CCCCEEEEEEccCCCceEEEEEC---
Confidence 68889999999999887643 46999999988753 333444566789998 6676665 667788777776541
Q ss_pred CCcceeeeccccccEEEEEEcCCCCEEEEeeC-CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCC
Q 011216 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 305 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
.+.....+..+........|+|||+.|+..+. ++...+|.+.... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------------------------------g 318 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------------------------------G 318 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---------------------------------C
Confidence 22334455555555677899999998886654 4566666553211 1
Q ss_pred eeE--EEcccceeeeeEEEEecCcccCCCcEEEEEecCC---eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEE
Q 011216 384 SVA--TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 458 (491)
Q Consensus 384 ~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 458 (491)
... .+.+. ....+.|||||++|+..+.++ .|++||+.+++... +..+ ......+|+|||+.|+.+
T Consensus 319 ~~~~lt~~g~--------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 319 AAQRVTFTGS--------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYA 388 (427)
T ss_pred ceEEEecCCC--------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEE
Confidence 111 11111 112457899999999877654 69999998887543 3322 345788999999988877
Q ss_pred ECCC-c--EEEecCC
Q 011216 459 SWDG-D--VVRWEFP 470 (491)
Q Consensus 459 ~~Dg-~--i~iw~~~ 470 (491)
+.++ . +.+-++.
T Consensus 389 ~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 389 TQQGGRSVLAAVSSD 403 (427)
T ss_pred EecCCCEEEEEEECC
Confidence 6544 3 4444553
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=3.5e-12 Score=117.99 Aligned_cols=256 Identities=16% Similarity=0.172 Sum_probs=154.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCCccccc
Q 011216 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 206 (491)
..+.|+|||+++.+++.||.|.++|+.+++.+.+..... ....+++|+||++++++. ..+.+.++|.++.+....
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~ 115 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT 115 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEeccccccceee
Confidence 457899999999999999999999999998776654332 477899999999999876 578999999998877665
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCeeeE-EEeccCCCeEEEEEecCCCCE
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~ 284 (491)
......... .....+..+..+|....++..-. .+.|.+.|....+.+. .............|. +++++
T Consensus 116 I~~~~~~~~---------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d-pdgry 185 (369)
T PF02239_consen 116 IPTGGMPVD---------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD-PDGRY 185 (369)
T ss_dssp EE--EE-TT---------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE--TTSSE
T ss_pred ccccccccc---------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC-cccce
Confidence 543322110 02236778888888886666555 5889999987765432 233445567788887 77777
Q ss_pred EEEE-eCCCeEEEEeCccccC---------------------------------------------------CCcceeee
Q 011216 285 IYSG-SDDNLCKVWDRRCLNV---------------------------------------------------KGKPAGVL 312 (491)
Q Consensus 285 l~s~-s~dg~i~iwd~~~~~~---------------------------------------------------~~~~~~~~ 312 (491)
++.+ ..+..|-++|...... ..+.+..+
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 6554 4555777777641100 01111122
Q ss_pred ccccccEEEEEEcCCCCEEEEe----eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 313 MGHLEGITFIDSRGDGRYLISN----GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 313 ~~~~~~i~~i~~sp~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
.....+ ..+..+|+++++++. ...+.|.++|.++.. .+..+
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~----------------------------------~~~~i 310 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK----------------------------------VVKTI 310 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE----------------------------------EEE-H
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc----------------------------------eeEEE
Confidence 222222 456678888888877 344678888888732 22222
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEEEecC--CeEEEEECCCccEEEEec
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--SCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iwd~~~~~~~~~~~ 437 (491)
..... ....++.|+++|+.+.....+ +.|.+||..+.+.+..+.
T Consensus 311 ~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 311 TPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred eccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 21110 013455788899987766554 469999999999998886
No 234
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=5.2e-13 Score=111.59 Aligned_cols=276 Identities=20% Similarity=0.209 Sum_probs=177.6
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC---CCc-eEEEEecCCeEEEEECCCCccccccceecccccccccc
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.|.+.+|++...+..............+..+.|.- +|. .|+-+-..|.|.++..........+....... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k---i~~ 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK---ISV 121 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh---hhh
Confidence 46788999876543331111112223567777753 444 55666778889998765433322222111000 000
Q ss_pred CCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE--EEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEe
Q 011216 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 221 ~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd 298 (491)
....++.|++.+..++++..+|.+.+-+........ .++.|.-.+....|+..+.+++++|+.|+.+..||
T Consensus 122 -------~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 122 -------VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred -------eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEE
Confidence 025678899999999999999999977766555443 77899999999999988889999999999999999
Q ss_pred CccccCCCcceee-eccccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccc
Q 011216 299 RRCLNVKGKPAGV-LMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
+|. +.+.+.. .+-|..+|.+|.-+| .+.+|++|+.|..|++||.|++..+...
T Consensus 195 ~R~---p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~---------------------- 249 (339)
T KOG0280|consen 195 IRI---PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK---------------------- 249 (339)
T ss_pred ecC---CcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc----------------------
Confidence 982 2233333 556889999998876 5789999999999999999976533211
Q ss_pred ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc--c---EEEEecCCCCCeeeeEecCC
Q 011216 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--E---QVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~---~~~~~~~h~~~v~~~~~s~~ 451 (491)
- .....+.+...+|... +++|+++-.+| .+|-+...+ + .....+.|.+-+..-.|...
T Consensus 250 -----------~---~v~GGVWRi~~~p~~~--~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 250 -----------A---KVGGGVWRIKHHPEIF--HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred -----------C---ccccceEEEEecchhh--hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence 0 0112333334444321 33444444444 566665443 2 33444577777777788655
Q ss_pred CCeEEEEE-CCCcEE-EecCCCC
Q 011216 452 QPMLVSSS-WDGDVV-RWEFPGN 472 (491)
Q Consensus 452 ~~~l~s~~-~Dg~i~-iw~~~~~ 472 (491)
...|+|++ .|..++ +|-.-++
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cceeeeeeccccceeeeeeeccC
Confidence 56888876 677755 8865554
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.59 E-value=1.3e-12 Score=125.77 Aligned_cols=233 Identities=21% Similarity=0.238 Sum_probs=150.1
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---CeEEEEECCCCccccccceeccccccccccCC
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
..|.++|..... ...+. .+...+...+|+|||++|+.+..+ ..|++||+.+++......
T Consensus 170 ~~l~~~d~~g~~-~~~l~---~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-------------- 231 (417)
T TIGR02800 170 YELQVADYDGAN-PQTIT---RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-------------- 231 (417)
T ss_pred ceEEEEcCCCCC-CEEee---cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--------------
Confidence 368888876442 22222 233368889999999999987754 479999998876533221
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-ecC--CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC-CC--eEEE
Q 011216 223 DGGYSFGIFSLKFSTDGRELVAG-SSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~~-~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg--~i~i 296 (491)
+...+.+++|+|||+.|+.. +.+ ..|++||+.++.. ..+..+........|+ ++++.|+..+. ++ .|.+
T Consensus 232 ---~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 232 ---FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred ---CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEE
Confidence 11245668999999977654 333 3599999987754 3444455555677898 67777765554 33 5777
Q ss_pred EeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC---cEEEeeCCCCCCccccccCcccceeeceeecCCCC
Q 011216 297 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
+|+. .+. ...+..+...+..+.|+|+|++|+.++.++ .|.+||+.+..
T Consensus 307 ~d~~----~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~------------------------ 357 (417)
T TIGR02800 307 MDAD----GGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG------------------------ 357 (417)
T ss_pred EECC----CCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC------------------------
Confidence 7765 222 334444455677889999999999888775 78888887521
Q ss_pred cccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC---eEEEEECCCccEEEEecCCCCCeeeeEec
Q 011216 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
...+.... ....+.|+|+|++|+..+.++ .+++.+. +++....+..+.+.+..++|+
T Consensus 358 -----------~~~l~~~~-------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 358 -----------ERVLTDTG-------LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred -----------eEEccCCC-------CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 11111111 013457888999988887754 4666664 455566666555666666664
No 236
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=5.2e-12 Score=106.91 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=128.2
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC-CccccccceeccccccccccCCCC
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
..|.|||=.....+.... ...+|.++.+.++- |++. ..+.|.||...+ .+..........+.
T Consensus 75 NkviIWDD~k~~~i~el~----f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPk---------- 137 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS----FNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPK---------- 137 (346)
T ss_pred ceEEEEecccCcEEEEEE----eccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCC----------
Confidence 479999955444444332 23379999997754 4444 467899999873 33332222211111
Q ss_pred CceecEEEEEEcCCCCEEEE-EecCCeEEEEECCCCee--eEEEeccCCCeEEEEEecCCCCEEEEEeCCCe-EEEEeCc
Q 011216 225 GYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVWDRR 300 (491)
Q Consensus 225 ~h~~~v~~i~~s~~~~~l~~-~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~-i~iwd~~ 300 (491)
.+.+++-+.+..+||. |-.-|.|+|-|+...+. ...+..|.+.|.|++.+ .+|.++|++|..|+ |+|||..
T Consensus 138 ----GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 138 ----GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ----ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcC
Confidence 2333333334445555 34569999999987665 46788999999999998 88999999999997 7999998
Q ss_pred cccCCCcceeeecc--ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 301 CLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 301 ~~~~~~~~~~~~~~--~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
.+..+..+.. ....|.+|+|+|++.+|++++..|+|+|+.++...
T Consensus 213 ----~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 ----DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ----CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 7777777653 33569999999999999999999999999998744
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=9e-13 Score=126.30 Aligned_cols=234 Identities=21% Similarity=0.189 Sum_probs=146.1
Q ss_pred eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---CeEEEEECCCCccccccceeccccccccccCCC
Q 011216 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 147 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
.|.++|.+.... +.. ......+....|+|||+.|+..+.+ ..|.+||+.+++...+.....
T Consensus 199 ~l~i~d~dG~~~-~~l---~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g------------ 262 (448)
T PRK04792 199 QLMIADYDGYNE-QML---LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG------------ 262 (448)
T ss_pred EEEEEeCCCCCc-eEe---ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC------------
Confidence 677778765422 222 1223468889999999999887643 268899998876533322110
Q ss_pred CCceecEEEEEEcCCCCEEEE-EecCC--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-CCCe--EEEE
Q 011216 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNL--CKVW 297 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~--i~iw 297 (491)
.....+|+|||+.|+. .+.+| .|+++|+.+++. ..+..+.......+|+ ++++.|+..+ .++. |.++
T Consensus 263 -----~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 263 -----INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred -----CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 2335799999998875 45555 488889987765 3444555566788998 6676665544 3444 5555
Q ss_pred eCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-C--cEEEeeCCCCCCccccccCcccceeeceeecCCCCc
Q 011216 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
|+. .++ ...+..........+|+|||++|+..+.+ + .|.++|+.+..
T Consensus 336 dl~----~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~------------------------- 385 (448)
T PRK04792 336 NLA----SGK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA------------------------- 385 (448)
T ss_pred ECC----CCC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-------------------------
Confidence 664 233 22232222223457899999998876553 3 35556665521
Q ss_pred ccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-C--eEEEEECCCccEEEEecCCCCCeeeeEecCC
Q 011216 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 451 (491)
...+.... ....|.|+|||+.|+..+.+ | .+++++. +|.....+..+.+.+...+|+|-
T Consensus 386 ----------~~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 386 ----------MQVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ----------eEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 11111110 11356789999988876654 3 4778887 57677777767777888999873
No 238
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.3e-12 Score=123.03 Aligned_cols=234 Identities=21% Similarity=0.255 Sum_probs=148.4
Q ss_pred eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---CeEEEEECCCCccccccceeccccccccccCCC
Q 011216 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 147 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
.|.++|.+.+. ..... .+...+....|+|||+.|+..+.+ ..|.+|++.+++...+....
T Consensus 180 ~l~~~d~~g~~-~~~l~---~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLL---QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCCC-ceEEe---cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 47778877542 22221 233468899999999999887654 36999999888654433211
Q ss_pred CCceecEEEEEEcCCCCEEEEE-ecCC--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-CCC--eEEEE
Q 011216 224 GGYSFGIFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVW 297 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg--~i~iw 297 (491)
+.+....|+|||+.|+.. +.+| .|++||+.+++.. .+..+........|+ ++++.|+..+ .+| .|.++
T Consensus 243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence 134468999999988754 4444 6889999887653 454555566778898 6676665544 344 46666
Q ss_pred eCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-C--cEEEeeCCCCCCccccccCcccceeeceeecCCCCc
Q 011216 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-Q--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
|+. .+. ...+...........|+|+|+.|+..+.+ + .|.+||+.+..
T Consensus 317 d~~----~g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~------------------------- 366 (430)
T PRK00178 317 NVN----GGR-AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS------------------------- 366 (430)
T ss_pred ECC----CCC-EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC-------------------------
Confidence 764 333 22222122233457899999999877653 2 47888887632
Q ss_pred ccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC---CeEEEEECCCccEEEEecCCCCCeeeeEecCC
Q 011216 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 451 (491)
...+.... ....+.|+|||+.++..+.+ ..|+++++. +.....+..+.+.+...+|+|-
T Consensus 367 ----------~~~lt~~~-------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 367 ----------VRILTDTS-------LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ----------EEEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 11111100 11245788999999887654 357788874 4445556556677888889874
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=3.3e-13 Score=122.65 Aligned_cols=259 Identities=15% Similarity=0.149 Sum_probs=170.6
Q ss_pred CCceeEEEeEeCCCCceEE-EEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 167 SLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 167 ~~~~~v~~l~~sp~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
.+...-+.|..+|||+|++ +|.+...|++||+..-.+..-..+. ...|.-.-++.|-..++.-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD----------------ae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD----------------AEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc----------------ccceeEEEeccchhhheEe
Confidence 4455678899999999766 4667889999999865442221111 1134444455555566666
Q ss_pred ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
..|..|.+...........+ ...-..++++.+...+++.|+ ...|+-+++. .+..+..+....+.++++..+
T Consensus 113 ~~DR~IefHak~G~hy~~RI---P~~GRDm~y~~~scDly~~gs-g~evYRlNLE----qGrfL~P~~~~~~~lN~v~in 184 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGRHYRTRI---PKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLE----QGRFLNPFETDSGELNVVSIN 184 (703)
T ss_pred ecCceeeehhhcCeeeeeec---CcCCccccccCCCccEEEeec-CcceEEEEcc----ccccccccccccccceeeeec
Confidence 77777766543222111111 233467788766666655554 4577788887 788888888778899999999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
+...+|++|+.+|.|..||.+..+....... ......+... .....+.+..
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~----------------------------~~~v~s~pg~-~~~~svTal~ 235 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDA----------------------------ASSVNSHPGG-DAAPSVTALK 235 (703)
T ss_pred CccceEEecccCceEEEecchhhhhheeeec----------------------------ccccCCCccc-cccCcceEEE
Confidence 9999999999999999999998443222110 0000111100 0011123446
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccEEEEec-CCCCCeeeeEecCC--CCeEEEEECCCcEEEecCCCCCCCCCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPS--QPMLVSSSWDGDVVRWEFPGNGEAAPPL 479 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~--~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 479 (491)
|+.+|-.+++|+.+|.|+|||+++.+++..-. +..-+|..+.|.+. .+.|+|. ....++|||-..+.......
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence 77789999999999999999999988876543 33468999999876 3456665 45679999998887654433
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=127.49 Aligned_cols=201 Identities=18% Similarity=0.229 Sum_probs=157.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccC-CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
.+.|....+.-+...++.++.+..+.+||...+....+...... .-....-+.++++.-++++|+.-+.|.+|+....+
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 44455566666778899999999999999987754444321111 01122334467788899999999999999987222
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE-EEeccCCCeEEEEEecCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~~~~ 281 (491)
.. . ...||.+.|.++.|+.||+++++.+.|.++++|++++.+... ...+|+..|..++|. ++
T Consensus 167 ~p-~---------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n 229 (967)
T KOG0974|consen 167 KP-I---------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN 229 (967)
T ss_pred Cc-c---------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc
Confidence 11 1 234788999999999999999999999999999999988766 566999999999998 43
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc-cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
.+++++.|.++++|+. .+..+..+.+|.. .|..++..++...+++++.|+.+++||+...
T Consensus 230 --~i~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred --eeEEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 8999999999999976 4556667777765 5899999999999999999999999998763
No 241
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=9.5e-14 Score=118.38 Aligned_cols=313 Identities=17% Similarity=0.186 Sum_probs=196.3
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
+....+++++.+.++...|++|..+|++.-+.+... ++.........|...|..+.|+-....+++.+.|..+.---.+
T Consensus 65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence 456788999999999999999999999999988654 1222233445677889999999999999999998877655555
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC--CCeeeEEEeccCCCeEEEEE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~i~~ 277 (491)
.+.......+.... +++.+.-. +...|...|.|.+..+. .-..+.++.+|.+.+.+++|
T Consensus 145 ~~~~lg~Y~~~~~~-----------------t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~W 205 (404)
T KOG1409|consen 145 SGNRLGGYNFETPA-----------------SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKW 205 (404)
T ss_pred cCCcccceEeeccC-----------------CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEE
Confidence 55543332222211 11111111 45556666666665543 44567788899999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccc---
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC--- 354 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~--- 354 (491)
. +...+|++|..|..+.+||+- ........+.+|...|..+..-+--+.+.+++.||.|.+||.+........
T Consensus 206 d-~~~~~LfSg~~d~~vi~wdig---g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~ 281 (404)
T KOG1409|consen 206 D-PGQRLLFSGASDHSVIMWDIG---GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLD 281 (404)
T ss_pred c-CCCcEEEeccccCceEEEecc---CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccc
Confidence 6 788899999999999999995 233445677899999999988888889999999999999999864322111
Q ss_pred ----ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEE-------
Q 011216 355 ----NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY------- 423 (491)
Q Consensus 355 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~------- 423 (491)
........|.++.+-.........+.+.+.-..+-+ .-+.+.....+-+..-.++
T Consensus 282 s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~--------------~c~s~~~~~p~mg~e~~vR~~~~c~~ 347 (404)
T KOG1409|consen 282 SDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCG--------------KCSSNRSSYPTMGFEFSVRVCDSCYP 347 (404)
T ss_pred cchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCc--------------ccccCccccccccceeEEEEecccch
Confidence 111122223222221111110000000000000000 0000111111112222333
Q ss_pred -EEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 424 -VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 424 -iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
++|.. ..+++....-...|+.+.+..+-.+|+|+|.|..|+|||+..
T Consensus 348 ~i~~~~-~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 348 TIKDEE-RTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred hhhcCC-CCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 34432 233444432334689999988888999999999999999875
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3e-13 Score=117.35 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=157.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEeeccCCceeEEEeEeCCCCceE-EEEecC--CeEEEE
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILAKSLRWTVTDTSLSPDQRHL-VYASMS--PIVHIV 196 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l-~~~~~d--g~i~iw 196 (491)
.....+|-.++.. || .|++|-.+|.+.+|....+..-. .......+ ..+..+.-+|...++ ++|+.. ..+.||
T Consensus 102 ~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 4445666666655 33 58888899999999988442101 11111111 256777777766554 558888 789999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEEecCCeEEEEECCCC-eeeEEEeccCCCeE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVN 273 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~ 273 (491)
|++..+.+...+.. ..+.+.+. -.-.++++.|-+. ...|++++.-+.|++||...+ +++..+.--..+++
T Consensus 179 dle~~~qiw~aKNv-pnD~L~Lr------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNV-PNDRLGLR------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred ecccceeeeeccCC-CCccccce------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcce
Confidence 99887443322211 11111111 1226788999987 789999999999999999765 46677777788999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee-eccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
++... ++++.+++|..-+.+..||++ .++.... +.+..+.|++|..+|.++++++++-|..|+|+|+.+..
T Consensus 252 ~~~l~-p~gn~Iy~gn~~g~l~~FD~r----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 252 STGLT-PSGNFIYTGNTKGQLAKFDLR----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred eeeec-CCCcEEEEecccchhheeccc----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 99997 889999999999999999998 6666666 78889999999999999999999999999999999843
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=4.6e-13 Score=112.43 Aligned_cols=132 Identities=13% Similarity=0.284 Sum_probs=94.8
Q ss_pred eEEEEeCccccCCCcceeeecc-ccccEEEEEEcCCCCEEEEe--eCCCcEEEeeCCCCCCccccccCcccceeeceeec
Q 011216 293 LCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 369 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~i~~sp~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
...+|.++. ...+...+.- ..++|..++|+|+|+.|++. ..++.|.+||++.
T Consensus 38 ~~~l~~~~~---~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------------------- 92 (194)
T PF08662_consen 38 EFELFYLNE---KNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------------------- 92 (194)
T ss_pred eEEEEEEec---CCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------------------
Confidence 455555542 2233333332 34579999999999987654 4567899999963
Q ss_pred CCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec---CCeEEEEECCCccEEEEecCCCCCeeee
Q 011216 370 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRDC 446 (491)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 446 (491)
..+..+..... ....|||+|++|++++. .|.|.+||+.+.+.+...+ |. .++.+
T Consensus 93 -------------~~i~~~~~~~~--------n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~ 149 (194)
T PF08662_consen 93 -------------KKIFSFGTQPR--------NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDV 149 (194)
T ss_pred -------------cEeEeecCCCc--------eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEE
Confidence 44555543221 12368889999999875 4679999999888888775 33 47899
Q ss_pred EecCCCCeEEEEEC------CCcEEEecCCCC
Q 011216 447 SWHPSQPMLVSSSW------DGDVVRWEFPGN 472 (491)
Q Consensus 447 ~~s~~~~~l~s~~~------Dg~i~iw~~~~~ 472 (491)
+|+|||++|+++.. |+.++||++.+.
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 99999999998864 788999999754
No 244
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.55 E-value=9.5e-12 Score=111.85 Aligned_cols=296 Identities=16% Similarity=0.178 Sum_probs=191.7
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC---------
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------- 191 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg--------- 191 (491)
..-.-++..++|||.|.+|++....| |.+|.-.....+.... |. .|..+.|+|.++||.+-+..+
T Consensus 29 ~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~----~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 29 ESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR----HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred cccCcchhheeecCcchheehhhccc-eEEccccchhheeeee----cC-CceecccCcccceeeeeccCCccChhhccC
Confidence 33566788999999999999887664 8899877664333322 22 599999999999999976543
Q ss_pred ------eEEEEECCCCccccccceeccc----cccccccCCC-------------------CCc------eecEEEEEEc
Q 011216 192 ------IVHIVDVGSGTMESLANVTEIH----DGLDFSAADD-------------------GGY------SFGIFSLKFS 236 (491)
Q Consensus 192 ------~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~-------------------~~h------~~~v~~i~~s 236 (491)
.+.+||..+|............ .-+.+..... ..| ...|....|+
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsis 182 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSIS 182 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEec
Confidence 4999999998876544433221 0111111100 001 2457778888
Q ss_pred CCC--CEEEE-----EecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-----------CCCeEEEEe
Q 011216 237 TDG--RELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-----------DDNLCKVWD 298 (491)
Q Consensus 237 ~~~--~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-----------~dg~i~iwd 298 (491)
|.+ ..|+. .+..+.+++|.+..+..+....-....=..+.|. ..+++|+.-- ....+++++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEEEe
Confidence 853 34443 3567889999998776654433233333456776 4455443221 134678888
Q ss_pred CccccCCCcceeeeccccccEEEEEEcCCCCEEEEee--CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccc
Q 011216 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
++ ...+.......++|...+|.|.++.+++.+ .+..+.++|++.
T Consensus 262 ~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~----------------------------- 307 (561)
T COG5354 262 IT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG----------------------------- 307 (561)
T ss_pred ec-----ccccceeccccccceeeeecccCCceeEEecccccceeeccccc-----------------------------
Confidence 75 333333335678999999999988776554 678899999986
Q ss_pred ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC---CeEEEEECCCccEEE-EecCCCCCeeeeEecCCC
Q 011216 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~-~~~~h~~~v~~~~~s~~~ 452 (491)
. +..+-.... ...+.|||.+++++.++.| |.+.+||......+. .+.+. ...-+.|+||+
T Consensus 308 ------N-l~~~~Pe~~-------rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~ 371 (561)
T COG5354 308 ------N-LRFYFPEQK-------RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG 371 (561)
T ss_pred ------c-eEEecCCcc-------cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc
Confidence 2 111111111 1123678899999997765 689999987655443 55543 33557899999
Q ss_pred CeEEEEE------CCCcEEEecCCCCC
Q 011216 453 PMLVSSS------WDGDVVRWEFPGNG 473 (491)
Q Consensus 453 ~~l~s~~------~Dg~i~iw~~~~~~ 473 (491)
+++.+.. .|..|.||++....
T Consensus 372 qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 372 QFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred eEEEecCCCcccccCcceEEEEecCch
Confidence 9877653 37889999997654
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=1.9e-11 Score=113.48 Aligned_cols=286 Identities=16% Similarity=0.187 Sum_probs=171.1
Q ss_pred EEEEECC----CeEEEEEC--CCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec----CCeEEEEECCCC--ccccc
Q 011216 139 FVAGFQA----SQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SPIVHIVDVGSG--TMESL 206 (491)
Q Consensus 139 l~~~~~d----g~i~vw~~--~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~----dg~i~iwd~~~~--~~~~~ 206 (491)
+++|+.. +.|.+|++ .++ .+....... .......++++|++++|.++.. ++.|..|++... ++..+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g-~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETG-TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTT-EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCC-CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 4455544 68999888 444 233222211 2224677899999999999877 468999988763 43333
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCC-CeeeEE--Eec-----------cCCC
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLSLR--ILA-----------HTSD 271 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~--~~~-----------~~~~ 271 (491)
....... .....++++|++++|+++.. +|.|.++++.. +..... ... ....
T Consensus 80 ~~~~~~g--------------~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 80 NSVPSGG--------------SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp EEEEESS--------------SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred eeeccCC--------------CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 2222110 14567999999999998874 89999999987 333222 111 2345
Q ss_pred eEEEEEecCCCCEEEEEe-CCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCC
Q 011216 272 VNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~ 348 (491)
..++.++ |+++++++.. ....|.+|++......-.....+ .........++|+|+++++.+. -.++.|.++++...
T Consensus 146 ~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~ 224 (345)
T PF10282_consen 146 PHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS 224 (345)
T ss_dssp EEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred ceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc
Confidence 7889998 7777776654 34589999986221111111122 2334567899999999988655 45678999988732
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEEEEEC
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~ 427 (491)
.... ..+..................+.++|||++|+++.. .+.|.+|++
T Consensus 225 ~g~~------------------------------~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 225 DGSL------------------------------TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TTEE------------------------------EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred CCce------------------------------eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 1100 011111100000000001123357889999988775 568999998
Q ss_pred C--Ccc--EEEEecCCCCCeeeeEecCCCCeEEEEE-CCCcEEEecCCC
Q 011216 428 V--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 471 (491)
Q Consensus 428 ~--~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~~~ 471 (491)
. +++ .+..+.......+.++++|+|++|+++. .++.|.+|+++.
T Consensus 275 d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 275 DPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp CTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 3 333 3344443344579999999999998887 567899998854
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.55 E-value=8.3e-13 Score=110.86 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=104.7
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE--ecCCeEEE
Q 011216 128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI 195 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~--~~dg~i~i 195 (491)
-.+.|+|+|++|+.-.. -|...+|.++............ ..++|.+++|+|+|+.+++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999998775433 2345566653322222222222 23469999999999987654 35679999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECCCCeeeEEEeccCCCe
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
||++.... . .+. ...+..+.|+|+|++|++++. .|.|.+||..+.+.+.... | ..+
T Consensus 88 yd~~~~~i-~--~~~----------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~ 146 (194)
T PF08662_consen 88 YDVKGKKI-F--SFG----------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDA 146 (194)
T ss_pred EcCcccEe-E--eec----------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcE
Confidence 99962221 1 111 125778999999999999874 4679999999888876653 3 347
Q ss_pred EEEEEecCCCCEEEEEeC------CCeEEEEeCc
Q 011216 273 NTVCFGDESGHLIYSGSD------DNLCKVWDRR 300 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~------dg~i~iwd~~ 300 (491)
+.++|+ |+|++|++++. |+.++||+..
T Consensus 147 t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 147 TDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEc-CCCCEEEEEEeccceeccccEEEEEec
Confidence 899998 88999998874 7889999983
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=8.2e-11 Score=109.23 Aligned_cols=283 Identities=18% Similarity=0.227 Sum_probs=165.5
Q ss_pred ceEEEEEcCCCCEEEEEEC----CCeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEEEECC
Q 011216 126 RAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVG 199 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~----dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd~~ 199 (491)
.-..++++|++++|.+... ++.|..|.+... ..+...............++++|++++|+++.+ +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3456889999999998876 579999998764 233333222223335678999999999999875 7899999998
Q ss_pred C-CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCe--ee--EEEe-ccCCCe
Q 011216 200 S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK--LS--LRIL-AHTSDV 272 (491)
Q Consensus 200 ~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~--~~--~~~~-~~~~~v 272 (491)
. +.......... +.+. .+.....-.....++.|+|+++++++... ...|++|++.... .. ..+. ......
T Consensus 118 ~~g~l~~~~~~~~-~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP 194 (345)
T PF10282_consen 118 DDGSLGEVVQTVR-HEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGP 194 (345)
T ss_dssp TTSEEEEEEEEEE-SEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSE
T ss_pred CCcccceeeeecc-cCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCC
Confidence 7 44333222111 1110 00000111224778999999998887643 4579999997655 21 1222 344567
Q ss_pred EEEEEecCCCCEEE-EEeCCCeEEEEeCccccCCCcceeeecc----c--cccEEEEEEcCCCCEEEEee-CCCcEEEee
Q 011216 273 NTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMG----H--LEGITFIDSRGDGRYLISNG-KDQAIKLWD 344 (491)
Q Consensus 273 ~~i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~--~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd 344 (491)
+.+.|+ +++++++ +...++.|.++++.........+..... . ......|+++|||++|+++. ..+.|.+|+
T Consensus 195 Rh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 195 RHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 899998 5666655 4556788999988622111112222211 1 12577899999999987655 466799999
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~ 423 (491)
+....... ..+..+.... ......+++|+|++|++++. ++.|.
T Consensus 274 ~d~~~g~l------------------------------~~~~~~~~~G------~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 274 LDPATGTL------------------------------TLVQTVPTGG------KFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ECTTTTTE------------------------------EEEEEEEESS------SSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred EecCCCce------------------------------EEEEEEeCCC------CCccEEEEeCCCCEEEEEecCCCeEE
Confidence 95421100 1111111100 01233467889999999885 56899
Q ss_pred EEEC--CCccEEEEec-CCCCCeeeeEe
Q 011216 424 VYDL--VSGEQVAALK-YHTSPVRDCSW 448 (491)
Q Consensus 424 iwd~--~~~~~~~~~~-~h~~~v~~~~~ 448 (491)
+|++ .+|.+...-. ..-....||.|
T Consensus 318 vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 318 VFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 8876 4666543322 12334556655
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.3e-12 Score=115.12 Aligned_cols=283 Identities=15% Similarity=0.180 Sum_probs=170.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-----------CCeEEE
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----------SPIVHI 195 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-----------dg~i~i 195 (491)
-+-+.|||-|.||++-...| |.+|--.+-..+++ -.|. .|.-+.|||..+||++-+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R----F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR----FYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh----ccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 35689999999999998776 88996544322222 2344 4889999999999999652 247999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
||+.+|.....+........ .-.-+.||.|++++|.-..+ .|.||+..+-.++-.-.-.-..|...
T Consensus 287 WDI~tG~lkrsF~~~~~~~~-------------~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYL-------------KWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDF 352 (698)
T ss_pred EEccccchhcceeccCCCcc-------------ccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCc
Confidence 99999998776665321110 12346899999999887765 48899876643322111222345555
Q ss_pred EEecCCCCEEEEEeC---------------------------------------------------------CCeEEEEe
Q 011216 276 CFGDESGHLIYSGSD---------------------------------------------------------DNLCKVWD 298 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~---------------------------------------------------------dg~i~iwd 298 (491)
.|+ |.+++||.=+. -..+.|+.
T Consensus 353 sws-P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfr 431 (698)
T KOG2314|consen 353 SWS-PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFR 431 (698)
T ss_pred ccC-CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEE
Confidence 555 33444432111 00111222
Q ss_pred CccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC---CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcc
Q 011216 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
++. ..-++.. ....+.|...+|-|.|..+++-+.. .++.+|-+.+.....
T Consensus 432 ire---KdIpve~-velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~----------------------- 484 (698)
T KOG2314|consen 432 IRE---KDIPVEV-VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP----------------------- 484 (698)
T ss_pred eec---cCCCcee-eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch-----------------------
Confidence 210 0011111 1234567788999999888765543 457788776421111
Q ss_pred cccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe---cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCC
Q 011216 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 452 (491)
..+..+.. ..+....|+|.|++++.+. ..|.+.++|+.-......-.......+.+.|.|.|
T Consensus 485 -------~lVk~~dk--------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtG 549 (698)
T KOG2314|consen 485 -------SLVKELDK--------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTG 549 (698)
T ss_pred -------hhhhhhcc--------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCC
Confidence 12222221 1122335777899998764 46899999987433222111122346789999999
Q ss_pred CeEEEEEC------CCcEEEecCCCC
Q 011216 453 PMLVSSSW------DGDVVRWEFPGN 472 (491)
Q Consensus 453 ~~l~s~~~------Dg~i~iw~~~~~ 472 (491)
+|++|++. |.--++|++.+.
T Consensus 550 RYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 550 RYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred CEEEEeeehhhhccccceEEEEeecH
Confidence 99999875 455778888764
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=8.8e-12 Score=119.98 Aligned_cols=193 Identities=21% Similarity=0.144 Sum_probs=126.6
Q ss_pred cEEEEEEcCCCCEEEEEecC---CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE-EEeCCC--eEEEEeCccc
Q 011216 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL 302 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg--~i~iwd~~~~ 302 (491)
.+.+.+|+|||++|+.+... ..|++||+.+++... +..+...+.+++|+ ++++.|+ +.+.++ .|.+||+.
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~i~~~d~~-- 266 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFS-PDGSKLAVSLSKDGNPDIYVMDLD-- 266 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCCEEEEEECCCCCccEEEEECC--
Confidence 57788999999999887654 479999998876533 33455667789998 6666554 555544 58888875
Q ss_pred cCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccC
Q 011216 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.+ ....+..+........|+|||+.|+..+. ++ .|.++|+.+..
T Consensus 267 --~~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------------ 313 (417)
T TIGR02800 267 --GK-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE------------------------------ 313 (417)
T ss_pred --CC-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------------
Confidence 22 33344444444557789999998876654 33 47777765421
Q ss_pred CCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC---eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEE
Q 011216 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 456 (491)
...+..+. .....+.|+|+|++|+.++.++ .|++||+.++... .+... ......+|+||++.|+
T Consensus 314 -----~~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 314 -----VRRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMIL 380 (417)
T ss_pred -----EEEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 11111111 1123457888999999988776 8999999876543 33322 2345678999999888
Q ss_pred EEECCC---cEEEecCCC
Q 011216 457 SSSWDG---DVVRWEFPG 471 (491)
Q Consensus 457 s~~~Dg---~i~iw~~~~ 471 (491)
.++.++ .+.+.+...
T Consensus 381 ~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 381 YATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEeCCCcEEEEEEECCC
Confidence 777654 355555444
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.6e-11 Score=116.79 Aligned_cols=242 Identities=13% Similarity=0.101 Sum_probs=144.3
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCce--EEEEe-cC--CeEEEEECCCCccccccceecccccccccc
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYAS-MS--PIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~--l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
+.|.+.|.+.+.. ..+ . .....+..-.|+|||+. ++..+ .+ ..|.+.++.+++...+.....
T Consensus 165 ~~l~~~d~dG~~~-~~l-t--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------- 231 (428)
T PRK01029 165 GELWSVDYDGQNL-RPL-T--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------- 231 (428)
T ss_pred ceEEEEcCCCCCc-eEc-c--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---------
Confidence 4677778765532 222 1 12335677899999975 32233 33 368888998887554433211
Q ss_pred CCCCCceecEEEEEEcCCCCEEEEEec-CC----eEEEEECCCC--eeeEEEe-ccCCCeEEEEEecCCCCEEEEEe-CC
Q 011216 221 ADDGGYSFGIFSLKFSTDGRELVAGSS-DD----CIYVYDLEAN--KLSLRIL-AHTSDVNTVCFGDESGHLIYSGS-DD 291 (491)
Q Consensus 221 ~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg----~i~vwd~~~~--~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s-~d 291 (491)
.....+|+|||+.|+..+. +| .+.+|++..+ .....+. .+.......+|+ ++++.|+..+ .+
T Consensus 232 --------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~ 302 (428)
T PRK01029 232 --------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKD 302 (428)
T ss_pred --------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCC
Confidence 3446799999998887653 22 3444777653 1223333 223345678998 7777666554 56
Q ss_pred CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC---CcEEEeeCCCCCCccccccCcccceeeceee
Q 011216 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 292 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
|...+|.+.... .+.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+..
T Consensus 303 g~~~ly~~~~~~-~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~------------------- 362 (428)
T PRK01029 303 GRPRIYIMQIDP-EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR------------------- 362 (428)
T ss_pred CCceEEEEECcc-cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-------------------
Confidence 765666542110 122234444444567788999999998876543 368999987632
Q ss_pred cCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec---CCeEEEEECCCccEEEEecCCCCCeee
Q 011216 369 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
...+.... .....+.|+|||+.|+.... ...|+++|+..++..... ...+.+..
T Consensus 363 ----------------~~~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~ 419 (428)
T PRK01029 363 ----------------DYQLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRF 419 (428)
T ss_pred ----------------eEEccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccC
Confidence 11121111 01234678889998876543 357999999877654443 34556778
Q ss_pred eEecCCC
Q 011216 446 CSWHPSQ 452 (491)
Q Consensus 446 ~~~s~~~ 452 (491)
.+|+|-.
T Consensus 420 p~Ws~~~ 426 (428)
T PRK01029 420 PSWGAFP 426 (428)
T ss_pred ceecCCC
Confidence 8998854
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=1.6e-12 Score=111.06 Aligned_cols=275 Identities=15% Similarity=0.241 Sum_probs=172.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccc-c-ccceeccccccccccCCCCCceecEEEEEEcCCCC--EEEEEe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME-S-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGS 246 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~--~l~~~~ 246 (491)
-|.++.|...|.+|++|..+|.|.++.-.....- . .......++ .+|..-........|..+.|.++++ .++..+
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe-pEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE-PEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccC-cccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5889999999999999999999999975433210 0 111111111 1111111111233688899998654 677778
Q ss_pred cCCeEEEEECCCCeee-----------------------------------EEE-eccCCCeEEEEEecCCCCEEEEEeC
Q 011216 247 SDDCIYVYDLEANKLS-----------------------------------LRI-LAHTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 247 ~dg~i~vwd~~~~~~~-----------------------------------~~~-~~~~~~v~~i~~~~~~~~~l~s~s~ 290 (491)
.|.+|++|.+...... +.+ ..|.-.|+++.++ .+...++++ .
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~lSA-D 183 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFLSA-D 183 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEeec-c
Confidence 8999999987532110 111 1577889999997 667666654 6
Q ss_pred CCeEEEEeCccccCCCccee----eeccccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeec
Q 011216 291 DNLCKVWDRRCLNVKGKPAG----VLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 291 dg~i~iwd~~~~~~~~~~~~----~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
|=.|.+|++...+.....+- .+.....-|++..|+|. ...++..+..|+|++-|++....-..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~------------ 251 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA------------ 251 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc------------
Confidence 77899999874432222221 11223456889999995 56788888999999999995221000
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC-CCccEEEEecCCC----
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL-VSGEQVAALKYHT---- 440 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~---- 440 (491)
..+.+..+.+..- .+....++..+....|+++|+|+++-.. -+|++||+ ...+++.+++.|.
T Consensus 252 -------hsKlfEepedp~~-----rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 252 -------HSKLFEEPEDPSS-----RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred -------hhhhhccccCCcc-----hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHH
Confidence 0001111111111 1111222233344467889999998754 46999999 4566777776553
Q ss_pred --------CCe---eeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 441 --------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 441 --------~~v---~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
..| ..++|+-++.+++||+....++++++..+.
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 122 457999999999999999999999976554
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=1.9e-12 Score=125.84 Aligned_cols=200 Identities=18% Similarity=0.231 Sum_probs=152.4
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.|....+.-+.+.++.+..++.+.+||...+.........+.- --....-+.++++.-++++|+.-+.
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------------~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------------TLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceE------------EEEeEEEEeccCcEEEEEecccccc
Confidence 4555556667888999999999999999877654433322211 0012223345666678999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcce-eeeccccccEEEEEEcCCCC
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~i~~sp~~~ 329 (491)
|.+|+....+....+.+|.+.|..+.++ .+++++++.|.|.++++|++. ..+.. ...-+|...|..+.|.|+
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~----s~~~~~~~~fgHsaRvw~~~~~~n-- 229 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPID----SREVLGCTGFGHSARVWACCFLPN-- 229 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecc----cccccCcccccccceeEEEEeccc--
Confidence 9999998655555688999999999998 899999999999999999998 33333 366789999999999998
Q ss_pred EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC
Q 011216 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
.+++++.|-++++|+... ..+..+.+|.. +..+..+..++
T Consensus 230 ~i~t~gedctcrvW~~~~-----------------------------------~~l~~y~~h~g-----~~iw~~~~~~~ 269 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNG-----------------------------------TQLEVYDEHSG-----KGIWKIAVPIG 269 (967)
T ss_pred eeEEeccceEEEEEeccc-----------------------------------ceehhhhhhhh-----cceeEEEEcCC
Confidence 899999999999997664 34445665552 33445566667
Q ss_pred CcEEEEEecCCeEEEEECCC
Q 011216 410 QKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 410 ~~~l~~g~~dg~i~iwd~~~ 429 (491)
...+++++.||.+++||+..
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEeeccCcchhhhhhhc
Confidence 88999999999999999754
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.47 E-value=5.6e-10 Score=100.91 Aligned_cols=281 Identities=14% Similarity=0.082 Sum_probs=167.8
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec----------CCeEEEEECCCCccccccceeccccc
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (491)
++|.+.|..+++.+........ ...+ ++||++.|+++.. +..|.+||..+.+......++...+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 7999999999866665543332 2234 9999998888765 67999999999988766655432110
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEe-c-CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCe
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-S-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 293 (491)
+ .......++++|||++|++.. . +..|.+.|+.+++.+..+.-- +...-+..+ .+..+ .-+.||.
T Consensus 102 ~---------~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~-e~~~~--~~~~Dg~ 168 (352)
T TIGR02658 102 L---------VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTA-NDTFF--MHCRDGS 168 (352)
T ss_pred h---------ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEec-CCccE--EEeecCc
Confidence 0 001344689999999998776 3 689999999999998877532 211222221 22222 2234454
Q ss_pred EEEEeCccccCCC-cceeeeccccccEE-EEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecC
Q 011216 294 CKVWDRRCLNVKG-KPAGVLMGHLEGIT-FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 294 i~iwd~~~~~~~~-~~~~~~~~~~~~i~-~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
.....+....... .....+.....++. .-.+.+ +|+++.+... |.|.+.|+........
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~----------------- 230 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL----------------- 230 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-----------------
Confidence 4443332111000 00001111000000 003344 8888877766 9999999765321110
Q ss_pred CCCcccccCCCCCeeEEEcccc---eeeeeEEEEecCcccCCCcEEEEEec----------CCeEEEEECCCccEEEEec
Q 011216 371 PPQARDLKHPCDQSVATYKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~ 437 (491)
..+..+.... .... ...-..+++++++.+++... .+.|.++|..+++.+..+.
T Consensus 231 ------------~~~~~~~~~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 231 ------------PAIEAFTEAEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred ------------ceeeeccccccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 1111110000 0000 00001367778888888532 2479999999999999887
Q ss_pred CCCCCeeeeEecCCCC-eEEEEE-CCCcEEEecCCCCCCCCC
Q 011216 438 YHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 438 ~h~~~v~~~~~s~~~~-~l~s~~-~Dg~i~iw~~~~~~~~~~ 477 (491)
. ...+..++++||++ +|++.. .++.|.+.|..+.+....
T Consensus 297 v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 297 L-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred C-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 4 34789999999999 888776 578899999988765443
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.4e-11 Score=112.90 Aligned_cols=194 Identities=18% Similarity=0.187 Sum_probs=154.1
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEe------CC--------------CCceEEEEecCCe
Q 011216 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL------SP--------------DQRHLVYASMSPI 192 (491)
Q Consensus 133 s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~------sp--------------~~~~l~~~~~dg~ 192 (491)
.|-+.|+|....||.+++|+..++...+.........+.-++..| +| |...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 355679999999999999999988555544433333344444444 22 3346777888999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
|.+|++..++....... .+|.++|.++.++.+-..|.+++.|+.+..|+.......+.+......+
T Consensus 82 v~~ys~~~g~it~~~st--------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLST--------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEEEecCCeEEEEEec--------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc
Confidence 99999998887554432 2577799999999998999999999999999999999999999989999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-----CCEEEEe-eCCCcEEEeeCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----GRYLISN-GKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-----~~~l~~~-~~dg~i~iwd~~ 346 (491)
.+++++ +++..+++++. .|++||+. ..+.+..+.+|.++|.++.|.-+ |.+++++ ..+.-+.+|-++
T Consensus 148 ~sl~is-~D~~~l~~as~--~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 148 SSLCIS-PDGKILLTASR--QIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ceEEEc-CCCCEEEeccc--eEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 999998 77889988874 89999998 88999999999999999999776 6666654 344557788766
Q ss_pred C
Q 011216 347 K 347 (491)
Q Consensus 347 ~ 347 (491)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.7e-11 Score=115.74 Aligned_cols=195 Identities=21% Similarity=0.180 Sum_probs=125.4
Q ss_pred cEEEEEEcCCCCEEEEEecC---CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE-EEeCCC--eEEEEeCccc
Q 011216 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDN--LCKVWDRRCL 302 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg--~i~iwd~~~~ 302 (491)
.+....|+|||+.|+..+.+ ..|++||+.+++.. .+....+.+....|+ ++++.|+ +.+.+| .|.+||+.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~-- 275 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWS-PDGSKLAFVLSKDGNPEIYVMDLA-- 275 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEEC-CCCCEEEEEEccCCCceEEEEECC--
Confidence 68889999999999876643 46999999888653 333334455678998 6676665 555555 57888885
Q ss_pred cCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccC
Q 011216 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.+ ....+..+........|+|||+.|+..+. ++ .|.++|+.+...
T Consensus 276 --~~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----------------------------- 323 (430)
T PRK00178 276 --SR-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----------------------------- 323 (430)
T ss_pred --CC-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------------------------
Confidence 33 33445555555667899999998876654 33 466677655221
Q ss_pred CCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-C--eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEE
Q 011216 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 456 (491)
..+ .+.+. ....+.|+|||++|+..+.+ + .|++||+.+++... +. +........|+|||+.|+
T Consensus 324 ---~~l-t~~~~--------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~ 389 (430)
T PRK00178 324 ---ERV-TFVGN--------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLI 389 (430)
T ss_pred ---EEe-ecCCC--------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEE
Confidence 000 11111 11245788899999887653 3 58899998876533 32 222334678999999887
Q ss_pred EEECC---CcEEEecCCCCC
Q 011216 457 SSSWD---GDVVRWEFPGNG 473 (491)
Q Consensus 457 s~~~D---g~i~iw~~~~~~ 473 (491)
.++.+ ..|.++++....
T Consensus 390 ~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 390 YATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred EEEecCCceEEEEEECCCCc
Confidence 76643 346777775543
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=4.2e-11 Score=114.86 Aligned_cols=194 Identities=19% Similarity=0.173 Sum_probs=121.3
Q ss_pred cEEEEEEcCCCCEEEEEecC---CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE-EEeCCCe--EEEEeCccc
Q 011216 229 GIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCL 302 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg~--i~iwd~~~~ 302 (491)
.+.+..|+|||+.|+..+.+ ..|++||+.+++.. .+....+......|+ ++++.|+ +.+.++. |.++|+.
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~-- 294 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFS-PDGKKLALVLSKDGQPEIYVVDIA-- 294 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeEC-CCCCEEEEEEeCCCCeEEEEEECC--
Confidence 67789999999998876543 36999999887653 232223344578998 6676554 5566675 6677775
Q ss_pred cCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccC
Q 011216 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
. .....+..+.......+|+|||+.|+..+. ++ .|.++|+.+...
T Consensus 295 --t-g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----------------------------- 342 (448)
T PRK04792 295 --T-KALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----------------------------- 342 (448)
T ss_pred --C-CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-----------------------------
Confidence 2 234445555556678899999998876553 33 466666654210
Q ss_pred CCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-C--eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEE
Q 011216 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 456 (491)
..+ ++.+.. ...+.|+|||++|+..+.+ + .|.++|+.+++.. .+... .......|+|||+.|+
T Consensus 343 ---~~L-t~~g~~--------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 343 ---SRL-TFEGEQ--------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred ---EEE-ecCCCC--------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 000 111111 1345788999998877653 3 5677888877653 33322 1233568999999877
Q ss_pred EEEC-CCc--EEEecCCCC
Q 011216 457 SSSW-DGD--VVRWEFPGN 472 (491)
Q Consensus 457 s~~~-Dg~--i~iw~~~~~ 472 (491)
..+. +|. +++++.+..
T Consensus 409 ~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 6554 343 667776544
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=2.8e-11 Score=101.42 Aligned_cols=205 Identities=19% Similarity=0.180 Sum_probs=142.5
Q ss_pred CCceEEEEEcC---CCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCce---eEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 124 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 124 ~~~v~~~~~s~---dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
.+.++.+.|.- +|. .|+-+..+|.|.++..........+.......- ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 55667777753 455 566677789999998765433332222222211 24567899999999999999999866
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCC-CeeeEE-EeccCCCeE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLR-ILAHTSDVN 273 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~-~~~~~~~v~ 273 (491)
+............ ..|..++....|+. +.+.+.+|+.|+.+..||++. ++.+.. ..-|...|.
T Consensus 149 ~~t~~~le~vq~w--------------k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~ 214 (339)
T KOG0280|consen 149 YETEMVLEKVQTW--------------KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV 214 (339)
T ss_pred ecceeeeeecccc--------------cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence 6555444332221 14777899999986 456889999999999999983 333333 456889999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC--CEEEEeeCCCcEEEeeCCC
Q 011216 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--~~l~~~~~dg~i~iwd~~~ 347 (491)
+|.-+|+.+.++++|+.|-.|++||.|. .++++..-. -.++|..+.++|.- +.|+++-.+| .+|-+...
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRn---m~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRN---MGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhc---ccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 9999999999999999999999999983 334443322 33889999999953 3445554444 67777665
No 258
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=3.1e-11 Score=112.91 Aligned_cols=289 Identities=11% Similarity=0.109 Sum_probs=196.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------------EEEEEeeccCCceeEEEeEeCCCCceEEEEecCC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg 191 (491)
.....|++|+....++|+|+.||.++|..+.+.. .+.-.....+|.+.|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 4567899999999999999999999999886531 1111234568999999999999999999999999
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE-EEeccCC
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTS 270 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~ 270 (491)
.|.+|-+-.|......... ...+-|.+++|+.||..+.....||.|.+=.++.++.-. .+.+ .
T Consensus 94 lIiVWmlykgsW~EEMiNn--------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~ 157 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINN--------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--Q 157 (1189)
T ss_pred eEEEEeeecccHHHHHhhC--------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--h
Confidence 9999999887653322111 123379999999999999999999999988877654321 1221 1
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccC---CCcce----eeeccccccEEEEEE--------cCCCCEEEEee
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKPA----GVLMGHLEGITFIDS--------RGDGRYLISNG 335 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~----~~~~~~~~~i~~i~~--------sp~~~~l~~~~ 335 (491)
....+.|+ ++.+.++.+-..|.+.++|....-. ...+. ..+......|..+.| .|+...|+++-
T Consensus 158 ~l~hv~ws-~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWS-EDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeec-ccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 23478898 7777788888889999999641100 00010 011111223445555 35778899999
Q ss_pred CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.+|.+.|..-.+.. .++..-.+. . .....|+++|..||+
T Consensus 237 ~nGr~QiMR~eND~---------------------------------~Pvv~dtgm----~----~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDP---------------------------------EPVVVDTGM----K----IVGAKWNHNGAVLAV 275 (1189)
T ss_pred cCceehhhhhcCCC---------------------------------CCeEEeccc----E----eecceecCCCcEEEE
Confidence 99988876544321 111111110 1 123357789999999
Q ss_pred EecCC---------eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 416 GSHDS---------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 416 g~~dg---------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
++.+. .|.+|.. -|+.+.+++.....|++++|-..|-.++.+ .|+.|++=+++.+
T Consensus 276 cG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 276 CGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred ccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence 87642 5677764 578888888888899999998777666554 4666666555443
No 259
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=7.7e-10 Score=96.11 Aligned_cols=280 Identities=16% Similarity=0.187 Sum_probs=175.0
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---CeEEEEECCC--Cccccccceeccccccccc
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGS--GTMESLANVTEIHDGLDFS 219 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~ 219 (491)
+.-|++|++.+...-......-.....++-|+|+|+++.|.++..+ |.|.-|.++. |+...+-.....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~------- 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP------- 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC-------
Confidence 4569999998532222222333444578899999999999988654 6677777664 554333222111
Q ss_pred cCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCC-Ceee--EEEeccCCC----------eEEEEEecCCCCEE
Q 011216 220 AADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA-NKLS--LRILAHTSD----------VNTVCFGDESGHLI 285 (491)
Q Consensus 220 ~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~-~~~~--~~~~~~~~~----------v~~i~~~~~~~~~l 285 (491)
+ .+...++++++|++++++.. .|.|.++-+.. |.+. .....|.+. +....+. |++++|
T Consensus 88 -----g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t-P~~~~l 159 (346)
T COG2706 88 -----G--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT-PDGRYL 159 (346)
T ss_pred -----C--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC-CCCCEE
Confidence 1 13478999999999998875 58899999865 3322 122345554 7788887 788888
Q ss_pred EEEeC-CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCCccccccCccccee
Q 011216 286 YSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 286 ~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
++... .-.|.+|++............+ ......+.|.|+|++++..+.. -+++|.+|......
T Consensus 160 ~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~-------------- 224 (346)
T COG2706 160 VVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV-------------- 224 (346)
T ss_pred EEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC--------------
Confidence 87753 2378899987332222222222 3445678999999999876554 48899999987731
Q ss_pred eceeecCCCCcccccCCCCCeeEEEccccee---eeeEEEEecCcccCCCcEEEEEec-CCeEEEEECCC--ccE--EEE
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVL---RTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS--GEQ--VAA 435 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~--~~~--~~~ 435 (491)
..+..++.+... -+-....-.+.+++||++|++... ...|.+|.+.. +++ +..
T Consensus 225 -------------------g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 225 -------------------GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred -------------------ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 111111111100 000011122356789999998865 23677777643 332 222
Q ss_pred ecCCCCCeeeeEecCCCCeEEEEECC-CcEEEecCCCCC
Q 011216 436 LKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPGNG 473 (491)
Q Consensus 436 ~~~h~~~v~~~~~s~~~~~l~s~~~D-g~i~iw~~~~~~ 473 (491)
...+....++..|+|++++|+++..| ..|.++..+...
T Consensus 286 ~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 286 TPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred eccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 23444557899999999999988754 468888877643
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8.1e-11 Score=111.96 Aligned_cols=210 Identities=16% Similarity=0.134 Sum_probs=127.5
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEE---EEECC--CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFV---AGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~---~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 189 (491)
..++.+......+..-+|||||+.++ +...+ ..|.+.++.++.... +....+ .....+|+|||+.|+..+.
T Consensus 175 ~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g---~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 175 QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQG---NQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCC---CccceEECCCCCEEEEEEC
Confidence 33455555667778889999997532 44343 368888888774322 222222 3556899999998887663
Q ss_pred -CC----eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCe--EEEEECCC-Ce
Q 011216 190 -SP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-NK 260 (491)
Q Consensus 190 -dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~--i~vwd~~~-~~ 260 (491)
+| .+.+|++..+.......+... +.......+|+|||+.|+..+ .+|. |+++++.. +.
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~-------------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLNE-------------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeecC-------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 22 344567665321111111110 001234679999999888765 3554 55555542 23
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEeCC---CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-
Q 011216 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK- 336 (491)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~- 336 (491)
....+..+...+....|+ |+++.|+..+.+ ..|.+||+. .++. ..+......+....|+|||+.|+..+.
T Consensus 318 ~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~----~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLA----TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred ceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECC----CCCe-EEccCCCCCccceEECCCCCEEEEEECC
Confidence 344454555667889998 677777665543 368999986 3333 334333345677899999998875443
Q ss_pred --CCcEEEeeCCC
Q 011216 337 --DQAIKLWDIRK 347 (491)
Q Consensus 337 --dg~i~iwd~~~ 347 (491)
...|.++|+..
T Consensus 392 ~g~~~L~~vdl~~ 404 (428)
T PRK01029 392 SNESELYLISLIT 404 (428)
T ss_pred CCCceEEEEECCC
Confidence 34688888876
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=2e-12 Score=132.00 Aligned_cols=220 Identities=17% Similarity=0.214 Sum_probs=164.8
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.|.++.=+|...+-++|+.||.|++|....++.+....... . ..|+.+.|+.+|+.+.++..||.
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------------~-s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------------N-SRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------------c-chhhhhhhcccCCceeeeccCCc
Confidence 57888888999999999999999999998877655444321 1 47899999999999999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe---CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~ 327 (491)
+.+|.+. .++......|+.....+.|- +..+++++ .++.+.+||... .+..-.....|.+.++++++-|.
T Consensus 2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~---~~~~s~v~~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFI---GSLLATAGRSSDNRNVCLWDTLL---PPMNSLVHTCHDGGATVLAYAPK 2347 (2439)
T ss_pred eeecccC-CcceeccccCCccccceeee---ehhhhccccCCCCCcccchhccc---CcccceeeeecCCCceEEEEcCc
Confidence 9999987 66777778899999999997 26677764 568999999752 22222223789999999999999
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
.+.|++|+.+|.|++||++..+ ...++.. +.
T Consensus 2348 ~qllisggr~G~v~l~D~rqrq----------------------------------l~h~~~~---------------~~ 2378 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQ----------------------------------LRHTFQA---------------LD 2378 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHHH----------------------------------HHHHhhh---------------hh
Confidence 9999999999999999998632 2222222 11
Q ss_pred CCCcEEEEEecCCeEEEEECCCccEEEEecC---CCCC--e--eeeEecCCCCeEEEEECCCc
Q 011216 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSP--V--RDCSWHPSQPMLVSSSWDGD 463 (491)
Q Consensus 408 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~--v--~~~~~s~~~~~l~s~~~Dg~ 463 (491)
...++++|+..|.++||++.....+..+.. |.+- . ..+-.. ....|.+|+.||+
T Consensus 2379 -~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2379 -TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred -hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 357899999999999999988777766642 2211 0 111222 2345777777764
No 262
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=9.2e-10 Score=113.17 Aligned_cols=328 Identities=16% Similarity=0.175 Sum_probs=189.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEE----ECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw----~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
...+.|.++.|-++..-|+.+..+|.|.+. +..+. .+... ......|.+++||||+..|+..+.++++.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~V---G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIV---GSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEE---EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 446889999999999999999999999999 55443 12221 23334799999999999999999999887764
Q ss_pred CCCCccccccceec-------------ccccccc---------------cc-CCCCC---ceecEEEEEEcCCCCEEEEE
Q 011216 198 VGSGTMESLANVTE-------------IHDGLDF---------------SA-ADDGG---YSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 198 ~~~~~~~~~~~~~~-------------~~~~~~~---------------~~-~~~~~---h~~~v~~i~~s~~~~~l~~~ 245 (491)
.. -..+....+.. ..+..+| .. ..+.+ +...-..++|-.||.++|+.
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 21 11100000000 0000000 00 00001 33456789999999999988
Q ss_pred ec---C---CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC---CCeEEEEeCccccCCCcceeeecccc
Q 011216 246 SS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 246 ~~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
+- . ..++||+-+ |.....-..-.+--.+++|. |.|++|++... ...|.+|...... -+.....+....
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~ 304 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEE 304 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCC
Confidence 74 2 579999976 55443333334444678997 88999988764 4567777753221 112111222345
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCc-c--cc-cCCCC-CeeEEEccc
Q 011216 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-R--DL-KHPCD-QSVATYKGH 391 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~-~~~~~~~~~ 391 (491)
..|..+.|++|+..||..-.|. |.+|-..+. .|..+....-+.. . .+ .++.. ..+..+...
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY-------------HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNY-------------HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCC-------------EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence 6789999999999999977665 999987762 2222211111100 0 01 01111 111111110
Q ss_pred ceeeeeEEEEe----cCcccCCCcEEEEEecCCeEEEEECCCccE-----EEEecCCCCCeeeeEecCCCCeEEEEECCC
Q 011216 392 SVLRTLIRCHF----SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 392 ~~~~~~~~~~~----~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg 462 (491)
.........| ++..+|+..-++..-....+.+-.++.... ...+. -..+|.+++|++++..+++-..||
T Consensus 371 -g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~ 448 (928)
T PF04762_consen 371 -GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDG 448 (928)
T ss_pred -CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCC
Confidence 1111112222 222223222222222233466655544321 12332 357899999999998899999999
Q ss_pred cEEEecCCCCC
Q 011216 463 DVVRWEFPGNG 473 (491)
Q Consensus 463 ~i~iw~~~~~~ 473 (491)
.|.+|......
T Consensus 449 ~l~~~~~~~~~ 459 (928)
T PF04762_consen 449 SLSIYEWDLKN 459 (928)
T ss_pred CEEEEEecCCC
Confidence 99999976543
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.39 E-value=3.1e-12 Score=119.79 Aligned_cols=303 Identities=17% Similarity=0.250 Sum_probs=195.3
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC--ceEEEEecCCeEEEEECCC
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~l~~~~~dg~i~iwd~~~ 200 (491)
....+.++.++|.|+-+|.++.-| +.+-|+......... ..+...+.|-+..|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 356788999999999999998877 556677654222222 223345568888898854 4555555566677898865
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCee-eEEEeccCCCeEEEEEe
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFG 278 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~ 278 (491)
.....+.... .||...|+.+.|+|+. ..+++++.|..+..||+++... +..+..-...-..++|+
T Consensus 101 ss~~aIef~l-------------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 101 SSSNAIEFVL-------------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred CCccceEEEE-------------ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 4332222211 2688899999999965 4788999999999999988653 33444444556789998
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
-.+++.++ .+....|++||.+ ....++..+++|...|..++|..- ...+.+++.|++|+.||..+..........
T Consensus 168 yk~p~vla-sshg~~i~vwd~r---~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 168 YKDPNVLA-SSHGNDIFVWDLR---KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred ccCcchhh-hccCCceEEEecc---CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 66676654 4566789999998 345677888889999999988652 346889999999999999874433322222
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC-ccEEEEe
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAAL 436 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~ 436 (491)
.....|..+.+++.... .+. +...++.+.----+.....|+..+ .+++..+
T Consensus 244 t~~piw~~r~~Pfg~g~---------~~m-------------------p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGY---------CIM-------------------PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred ccCcceeccccccCcee---------Eec-------------------cccCCeeeeeccccchhhhhccccCCcceeee
Confidence 22222222211111100 000 000111111111122233444433 3678999
Q ss_pred cCCCCCeeeeEecCCC--------C--eEEEEECCCcEEEecCCCC
Q 011216 437 KYHTSPVRDCSWHPSQ--------P--MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~--------~--~l~s~~~Dg~i~iw~~~~~ 472 (491)
.+|...|....|-..+ + .|+|-+.|..+++|-+...
T Consensus 296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 9999988887775422 2 7999999999999998753
No 264
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.39 E-value=2.2e-11 Score=102.79 Aligned_cols=269 Identities=17% Similarity=0.271 Sum_probs=171.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeeccCC------------ceeEEEeEeCCCC--ceEEEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSL------------RWTVTDTSLSPDQ--RHLVYA 187 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~------------~~~v~~l~~sp~~--~~l~~~ 187 (491)
.+.|+++.|...|.||++|...|.|.+|.-.... .........+| ...|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5779999999999999999999999999865431 01111111222 2357888886654 456667
Q ss_pred ecCCeEEEEECCCCccccccc--eecc----------------------cccc-ccccC--CCCCceecEEEEEEcCCCC
Q 011216 188 SMSPIVHIVDVGSGTMESLAN--VTEI----------------------HDGL-DFSAA--DDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~--~~~~----------------------~~~~-~~~~~--~~~~h~~~v~~i~~s~~~~ 240 (491)
+.|.+|++|.+.......+.. +... ++.+ ...+. ....|..-|.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 789999999986553221110 0000 0000 00000 1246888899999999988
Q ss_pred EEEEEecCCeEEEEECCCCeee---EEEeccC-----CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcc----
Q 011216 241 ELVAGSSDDCIYVYDLEANKLS---LRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP---- 308 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~-----~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---- 308 (491)
.++++ .|-.|.+|+++-.... ..+..|. .-|++..|+|...+.+...+..|.|++-|+|....-...
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 77776 4667999998654322 2233343 458899999888899999999999999999832211111
Q ss_pred --------eeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCC
Q 011216 309 --------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 309 --------~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
..-+.+-...|..+.|+++|+++++-+. -+++|||++...
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k------------------------------- 312 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK------------------------------- 312 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc-------------------------------
Confidence 1112233456778899999999987654 479999998744
Q ss_pred CCCeeEEEccccee---------eeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 381 CDQSVATYKGHSVL---------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 381 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
.++.+..-|... ...+-..|...||.|.+.+++|+..+..-+|-+
T Consensus 313 --~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 313 --NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred --CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 333433322211 112223345567778888888888777777764
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=6e-09 Score=90.66 Aligned_cols=288 Identities=14% Similarity=0.140 Sum_probs=171.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-CeEEE
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHI 195 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~---dg~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g~i~i 195 (491)
-.+.+..+=++|+|++++|.++.. +|.|..|.++.. ..+...........+...+++++++++|+++.+. |.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 345667788999999999988765 477888887752 1233222222222245889999999999998865 78999
Q ss_pred EECCC-CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCeeeEEEe---ccCC
Q 011216 196 VDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRIL---AHTS 270 (491)
Q Consensus 196 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~---~~~~ 270 (491)
+.+.. |.......... +.+.. ++ ...-..-+....+.|++++|++.+- .-.|.+|++..++....-. ....
T Consensus 116 ~p~~~dG~l~~~v~~~~-h~g~~--p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 116 YPLQADGSLQPVVQVVK-HTGSG--PH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred EEcccCCccccceeeee-cCCCC--CC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 99865 44433322211 11110 00 0001112778899999999888753 3459999999776533211 3345
Q ss_pred CeEEEEEecCCCCEEEEEe-CCCeEEEEeCccccCCCcceeeecc------ccccEEEEEEcCCCCEEEEeeC-CCcEEE
Q 011216 271 DVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG------HLEGITFIDSRGDGRYLISNGK-DQAIKL 342 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~i~~i~~sp~~~~l~~~~~-dg~i~i 342 (491)
..+.|.|+ |++++.+... -+++|-+|...........++.+.. -......|..+|||++|.++-. ...|.+
T Consensus 192 GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 192 GPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 67899998 7787776655 5889999998732111122222211 1234668899999999987643 336777
Q ss_pred eeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC-e
Q 011216 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-C 421 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~ 421 (491)
|.+.... ..+.......... .+.....++++|++|+++..++ .
T Consensus 271 f~V~~~~---------------------------------g~L~~~~~~~teg---~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 271 FSVDPDG---------------------------------GKLELVGITPTEG---QFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred EEEcCCC---------------------------------CEEEEEEEeccCC---cCCccceeCCCCCEEEEEccCCCc
Confidence 7776522 1122111111000 0112224677899999998864 5
Q ss_pred EEEEEC--CCccEEEEec-CCCCCeeeeEec
Q 011216 422 VYVYDL--VSGEQVAALK-YHTSPVRDCSWH 449 (491)
Q Consensus 422 i~iwd~--~~~~~~~~~~-~h~~~v~~~~~s 449 (491)
|.+|.. .+|++-.... .......|+.|.
T Consensus 315 i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 315 ITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 777765 4555433322 233445566653
No 266
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.37 E-value=6.9e-09 Score=93.96 Aligned_cols=245 Identities=15% Similarity=0.157 Sum_probs=145.8
Q ss_pred EcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeeccC-C---ceeEEEeEeCCCCceEEEEe-c-CCeEEE
Q 011216 132 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS-L---RWTVTDTSLSPDQRHLVYAS-M-SPIVHI 195 (491)
Q Consensus 132 ~s~dg~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~-~---~~~v~~l~~sp~~~~l~~~~-~-dg~i~i 195 (491)
+||||+.|.++.. +..|.+||..+.+.+.++..... + ......++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887655 78999999999977766554322 1 12344789999999999876 3 689999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC-Cee-eEE---EeccCC
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKL-SLR---ILAHTS 270 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~-~~~-~~~---~~~~~~ 270 (491)
.|+.+++.......+.. ..-...+++..+ +-+.||......+.+ ++. ... +.....
T Consensus 133 vD~~~~kvv~ei~vp~~-----------------~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDC-----------------YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE 193 (352)
T ss_pred EECCCCcEEEEEeCCCC-----------------cEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcc
Confidence 99999988665544321 111112212211 112233333322221 111 011 101000
Q ss_pred CeE-EEEEecCCCCEEEEEeCCCeEEEEeCccccCC-Ccceeeecc-------ccccEEEEEEcCCCCEEEEee------
Q 011216 271 DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMG-------HLEGITFIDSRGDGRYLISNG------ 335 (491)
Q Consensus 271 ~v~-~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~-------~~~~i~~i~~sp~~~~l~~~~------ 335 (491)
++. .-.|.+.++.+++.... |.|.+.|+...... ......+.. ..+.+.-++++|+++.+++..
T Consensus 194 ~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 194 YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 000 00445457777777666 99999996422111 111221111 233445599999999888743
Q ss_pred ----CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc
Q 011216 336 ----KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 336 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
..+.|.++|..+. +.+..+... ...+..+++||++
T Consensus 273 thk~~~~~V~ViD~~t~----------------------------------kvi~~i~vG-------~~~~~iavS~Dgk 311 (352)
T TIGR02658 273 THKTASRFLFVVDAKTG----------------------------------KRLRKIELG-------HEIDSINVSQDAK 311 (352)
T ss_pred cccCCCCEEEEEECCCC----------------------------------eEEEEEeCC-------CceeeEEECCCCC
Confidence 1246899998773 333333321 1234557888999
Q ss_pred -EEEEEe-cCCeEEEEECCCccEEEEec
Q 011216 412 -YIYTGS-HDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 412 -~l~~g~-~dg~i~iwd~~~~~~~~~~~ 437 (491)
+|++.+ .++.|.++|..+++.+..+.
T Consensus 312 p~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 888777 47889999999999998883
No 267
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=4.2e-10 Score=103.44 Aligned_cols=196 Identities=16% Similarity=0.205 Sum_probs=146.4
Q ss_pred CCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEE------c--------------C
Q 011216 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF------S--------------T 237 (491)
Q Consensus 178 sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~------s--------------~ 237 (491)
.|...++|....||.+++|+...++...-+.....-.+ ..++..| + .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~-------------t~~~~~w~L~~~~s~~k~~~~~~~~~~s~ 68 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSG-------------TCTYTKWGLSADYSPMKWLSLEKAKKASL 68 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccC-------------cceeEEEEEEeccchHHHHhHHHHhhccC
Confidence 34567899999999999999998876544332221111 2222222 1 1
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc
Q 011216 238 DGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
|...++-|...|.|.+|+...++....+. .|.+.|+++.++ .+-..|++++.|+.+..|+.. ....+..+...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~ 143 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQ 143 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecc----cceeeeeeccC
Confidence 33467888889999999999999887776 699999999997 777899999999999999997 77888888888
Q ss_pred cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee
Q 011216 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 316 ~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
...+.+++.+|||..+++++ +.|++||+.+ .+.+..|.||....
T Consensus 144 ~~~~~sl~is~D~~~l~~as--~~ik~~~~~~----------------------------------kevv~~ftgh~s~v 187 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTAS--RQIKVLDIET----------------------------------KEVVITFTGHGSPV 187 (541)
T ss_pred CCccceEEEcCCCCEEEecc--ceEEEEEccC----------------------------------ceEEEEecCCCcce
Confidence 88999999999999999887 4799999998 47888999998655
Q ss_pred eeEEEEecCcccCC-CcEEEEE-ecCCeEEEEECCC
Q 011216 396 TLIRCHFSPVYSTG-QKYIYTG-SHDSCVYVYDLVS 429 (491)
Q Consensus 396 ~~~~~~~~~~~s~~-~~~l~~g-~~dg~i~iwd~~~ 429 (491)
....+... ++.. |.+++++ ..+..+.+|-+..
T Consensus 188 ~t~~f~~~--~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 188 RTLSFTTL--IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEEe--ccccccceeeeccccccceeEEEEEc
Confidence 54443333 2222 5565554 4455677776644
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.35 E-value=2.5e-09 Score=95.78 Aligned_cols=172 Identities=17% Similarity=0.140 Sum_probs=131.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC-eEEEEECCCCccccccceeccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANVTEIH 213 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~ 213 (491)
+|.+++..+. |...|.+...+-.++ -++.+.|.-..+.-+++-++.|..|| .+-|+|..+++........
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq-----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l--- 401 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ-----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL--- 401 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE-----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc---
Confidence 6788888765 566777766553332 34555688888888888899999999 8999999998865544321
Q ss_pred cccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC-
Q 011216 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN- 292 (491)
Q Consensus 214 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg- 292 (491)
+.|.++..+++|++++++.....+.+.|++++.....-+...+-|+.+.|+ ++++++|-+--+|
T Consensus 402 --------------g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYafP~gy 466 (668)
T COG4946 402 --------------GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAFPEGY 466 (668)
T ss_pred --------------cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEecCcce
Confidence 279999999999999999999999999999998765555667889999998 8899999887665
Q ss_pred ---eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee
Q 011216 293 ---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 293 ---~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~ 335 (491)
.|+++|+. .++ +.........-.+-+|.|++++|.--+
T Consensus 467 ~tq~Iklydm~----~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 467 YTQSIKLYDMD----GGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeeeEEEEecC----CCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 68999985 333 334444444455678999999887544
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=1.5e-11 Score=125.82 Aligned_cols=193 Identities=11% Similarity=0.194 Sum_probs=147.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
..+-..|.++.=+|...+-++|+.||.|++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCC
Confidence 44567788888899999999999999999999988766655443333 5799999999999999999999999999872
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe---cCCeEEEEECCCC--eeeEEEeccCCCeEEE
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEAN--KLSLRILAHTSDVNTV 275 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~---~dg~i~vwd~~~~--~~~~~~~~~~~~v~~i 275 (491)
.-.... ..|.....+++|-. ..+++++ .++.+.+||..-. ..... ..|.+.++++
T Consensus 2283 k~~~s~-----------------qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2283 KPYTSW-----------------QCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVL 2342 (2439)
T ss_pred cceecc-----------------ccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEE
Confidence 211110 13555677777764 4566654 3678999996432 22222 6899999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCC
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 350 (491)
++. |..++|++|+.+|.|++||++ ..+....++. ++ ...++++++..|.++||++.....
T Consensus 2343 ~~~-P~~qllisggr~G~v~l~D~r----qrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2343 AYA-PKHQLLISGGRKGEVCLFDIR----QRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred EEc-CcceEEEecCCcCcEEEeehH----HHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 998 788999999999999999998 5555554443 44 567899999999999999987543
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=5.3e-09 Score=99.06 Aligned_cols=263 Identities=15% Similarity=0.106 Sum_probs=161.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
.+..+++++.+|.|..+|..+|+.+-+......... ... .++..+++++.++.+..+|..+|+.........
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 356788888899999999998866544332222111 112 256778888899999999999998755433221
Q ss_pred ccccccCCCCCceecEEE-EEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe-----EEEEEecCCCCEEEEE
Q 011216 215 GLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHLIYSG 288 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~-i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~l~s~ 288 (491)
.+.+ ... .+..++.++.+|.|+.||..+++.+-++......+ .+.... +..++.+
T Consensus 136 --------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~---~~~v~~~ 196 (377)
T TIGR03300 136 --------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA---DGGVLVG 196 (377)
T ss_pred --------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE---CCEEEEE
Confidence 1111 111 24467778889999999999998776654322211 112222 2467788
Q ss_pred eCCCeEEEEeCccccCCCcceeeecccc-------ccEEEEEEcC--CCCEEEEeeCCCcEEEeeCCCCCCccccccCcc
Q 011216 289 SDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 289 s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~i~~i~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
..++.+..+|.+ .++.+....... .....+.-+| .+..+++++.+|.+..||..+++.
T Consensus 197 ~~~g~v~ald~~----tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~--------- 263 (377)
T TIGR03300 197 FAGGKLVALDLQ----TGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV--------- 263 (377)
T ss_pred CCCCEEEEEEcc----CCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE---------
Confidence 888999999987 444433221100 0000011111 245777788899999999987431
Q ss_pred cceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC
Q 011216 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 439 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 439 (491)
+-...... ...|. ..+..+++++.+|.|+.+|..+|+.+......
T Consensus 264 -------------------------~W~~~~~~--------~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~ 308 (377)
T TIGR03300 264 -------------------------LWKRDASS--------YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL 308 (377)
T ss_pred -------------------------EEeeccCC--------ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc
Confidence 11111000 01111 14667888889999999999999988765321
Q ss_pred C-CCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 440 T-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 440 ~-~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
. ........ .+..|++++.||.|+++|..+++.
T Consensus 309 ~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 309 KYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred cCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 1 12222222 456888999999999999877654
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=1.6e-10 Score=98.96 Aligned_cols=250 Identities=17% Similarity=0.230 Sum_probs=172.8
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC-CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
..++...|++...-|...-+++.+.|.+++||-- +.++.-...... ...+++++.+.++...|+
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~---------------mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY---------------MPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhh---------------CCCCceEeeeeccceEEE
Confidence 3566677888888888888999999999999963 334332222111 123789999999999999
Q ss_pred EEecCCeEEEEECC----CCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccE
Q 011216 244 AGSSDDCIYVYDLE----ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 244 ~~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
+|-.+|++.-+.+. ....++....|...+..+-|+ ....++++.+.|..+.---.+ .+..+....- ....
T Consensus 85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e----~~~~lg~Y~~-~~~~ 158 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTE----SGNRLGGYNF-ETPA 158 (404)
T ss_pred EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeec----cCCcccceEe-eccC
Confidence 99999999988664 334556667899999999997 667889999988776433332 2222211110 0011
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEE
Q 011216 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
+++.+.-. +...|...|.|.+-.+.... -+.+.++.+|...
T Consensus 159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~--------------------------------~~~i~~~~~h~~~----- 199 (404)
T KOG1409|consen 159 SALQFDAL--YAFVGDHSGQITMLKLEQNG--------------------------------CQLITTFNGHTGE----- 199 (404)
T ss_pred CCCceeeE--EEEecccccceEEEEEeecC--------------------------------CceEEEEcCcccc-----
Confidence 11111111 44455555555554443211 2567777777733
Q ss_pred EEecCcccCCCcEEEEEecCCeEEEEECCCccE-EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
..+..|.+..+.|++|..|..+.+||+.-.+- ...+.+|...|..++..+--+.|.+++.||.|.+|+++.....
T Consensus 200 -~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 200 -VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred -eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 34446777899999999999999999965543 4567799999999999998899999999999999999876544
No 272
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.3e-09 Score=99.52 Aligned_cols=253 Identities=19% Similarity=0.297 Sum_probs=161.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC--ceEEE-----EecCCeEEEEECCC
Q 011216 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVY-----ASMSPIVHIVDVGS 200 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~l~~-----~~~dg~i~iwd~~~ 200 (491)
++..|++|..+.| --..+.+.+|+..+-..+...+ |...|+.+.+||.+ ..+++ .+.-+.|+||....
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl----~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL----SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCccceeeee----eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 6899999976544 2245689999988743333322 33368999999974 34443 24456899998763
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCE-EEEEec-----------CCeEEEEECCCCeeeEEEecc
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSS-----------DDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~ 268 (491)
............. ...=..+.|++-|.- |+.++. ..++++.+++.......+ ..
T Consensus 204 ~~~~~~~a~ksFF-------------kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k 269 (566)
T KOG2315|consen 204 EGQHQPVANKSFF-------------KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LK 269 (566)
T ss_pred ccccchhhhcccc-------------ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CC
Confidence 3222111111111 002235788886653 333322 236888888844444444 45
Q ss_pred CCCeEEEEEecCCCCEEEE--EeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC---CcEEEe
Q 011216 269 TSDVNTVCFGDESGHLIYS--GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLW 343 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d---g~i~iw 343 (491)
.++|.++.|+ ++++.|++ |-.-..+.|+|++ +.++..+ ..++-+++-|+|.|++|+.++-+ |.+-+|
T Consensus 270 ~GPVhdv~W~-~s~~EF~VvyGfMPAkvtifnlr-----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 270 EGPVHDVTWS-PSGREFAVVYGFMPAKVTIFNLR-----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CCCceEEEEC-CCCCEEEEEEecccceEEEEcCC-----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 7999999998 66655544 4456789999985 5666555 34677889999999999988764 789999
Q ss_pred eCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-----
Q 011216 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----- 418 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----- 418 (491)
|+.+.+. +..+.... .+ - ..|+|||.++++++.
T Consensus 342 Dv~n~K~----------------------------------i~~~~a~~--tt--~----~eW~PdGe~flTATTaPRlr 379 (566)
T KOG2315|consen 342 DVPNRKL----------------------------------IAKFKAAN--TT--V----FEWSPDGEYFLTATTAPRLR 379 (566)
T ss_pred eccchhh----------------------------------ccccccCC--ce--E----EEEcCCCcEEEEEeccccEE
Confidence 9988433 22222221 01 1 157889999999875
Q ss_pred -CCeEEEEECCCccEEEEecCCCCCeeeeEecCC
Q 011216 419 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 419 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 451 (491)
|+.++||+. +|..+....-.+ ....+.|-|-
T Consensus 380 vdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 380 VDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 678999998 677765543222 5677788753
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.1e-10 Score=109.18 Aligned_cols=256 Identities=9% Similarity=0.094 Sum_probs=168.4
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
...++.|+....++++|+.||.+++..+.+...............+.. -....||+..|.-+.|+.+.+.|-+...+|.
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsm-NQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSM-NQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccch-hhhhccCcceEEEEEeccccccccccCCCce
Confidence 688999999999999999999999999876543222211111111111 1134589999999999999999999999999
Q ss_pred EEEEECCCCeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC
Q 011216 251 IYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG 328 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~ 328 (491)
|.+|-+-.+.....+. ...+-|.+++|+ .+|..+.....||.|.+=.+.....-++.+ . ......+.|++|.
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---k--g~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIWGKEL---K--GQLLAHVLWSEDL 168 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceecchhc---c--hheccceeecccH
Confidence 9999998887654443 345678999998 889999999999998877664221111211 1 1223468899999
Q ss_pred CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc-cee-eeeEEEEe-c--
Q 011216 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH-SVL-RTLIRCHF-S-- 403 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~-~-- 403 (491)
+.++.+-.+|.+.+||....-...-. . .......+. +.. ..+....| +
T Consensus 169 ~~~Lf~~ange~hlydnqgnF~~Kl~---~------------------------~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 169 EQALFKKANGETHLYDNQGNFERKLE---K------------------------DCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred HHHHhhhcCCcEEEecccccHHHhhh---h------------------------ceEEeeeeeecCCCccccceeeccCc
Confidence 99888888999999997652110000 0 000000000 000 00001111 0
Q ss_pred -CcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC
Q 011216 404 -PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 404 -~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D 461 (491)
...-||...|+++-.+|.+.|..-.+......+.. .-.|..+.|+++|..|+.+|.|
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCc
Confidence 01345888999999999998876554433333332 2568899999999999999865
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=5.8e-09 Score=109.49 Aligned_cols=273 Identities=13% Similarity=0.128 Sum_probs=156.1
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEeecc-----------CCceeEEEeEeCCCCceEEEEe-cCCeEE
Q 011216 128 YVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------SLRWTVTDTSLSPDQRHLVYAS-MSPIVH 194 (491)
Q Consensus 128 ~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----------~~~~~v~~l~~sp~~~~l~~~~-~dg~i~ 194 (491)
..++++++ |+++++-..++.|++||.... .+....... ..-.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788875 567777778889999998654 332221100 0112367899999888766655 456899
Q ss_pred EEECCCCccccccceeccccccccccCCC--CCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEecc---
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH--- 268 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--- 268 (491)
++|..++....+.... ..+..+..... ...-.....++++| ++..+++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G--~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNETVRTLAGNG--TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCEEEEEeccC--cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 9998876543322110 00000000000 00011346899999 5666667677899999999876542 22111
Q ss_pred ------------CCCeEEEEEecCCCC-EEEEEeCCCeEEEEeCccccCC----C-----cceeeec--------ccccc
Q 011216 269 ------------TSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCLNVK----G-----KPAGVLM--------GHLEG 318 (491)
Q Consensus 269 ------------~~~v~~i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~----~-----~~~~~~~--------~~~~~ 318 (491)
-.....|+++ ++++ ++++-+.++.|++||+...... + .....+. .....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred ccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 1235679998 5555 6667677899999998622100 0 0000000 00112
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 319 i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
...++++++|.++++-..++.|++||..+.........+. .. .. .+.. .....
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~----------------~G--~~--------dG~~-~~a~l 858 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----------------AG--FK--------DGKA-LKAQL 858 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC----------------cC--CC--------CCcc-ccccc
Confidence 3578999999988888899999999987632110000000 00 00 0000 00000
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
.....++++++|+++++-+.++.|++||+.+++.
T Consensus 859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112335677899888888899999999988764
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.26 E-value=6.5e-09 Score=109.13 Aligned_cols=273 Identities=11% Similarity=0.112 Sum_probs=158.0
Q ss_pred EEeEeCCC-CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCe
Q 011216 173 TDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDC 250 (491)
Q Consensus 173 ~~l~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~ 250 (491)
..++++++ ++.+++-+.++.|+++|........... ....+.. ........-.....+++.++++.|+++.. ++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~--~g~~G~~-dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGS--TGEEGLR-DGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEcc--CCCcCCC-CCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 45788875 5566666677899999986443211111 0000100 00000112224678999998886666554 577
Q ss_pred EEEEECCCCeeeEEEecc-----------------CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec
Q 011216 251 IYVYDLEANKLSLRILAH-----------------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 313 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 313 (491)
|+++|+.++.. .++.+. -.....++++|.++.++++.+.++.|++||.. .+. +..+.
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~----~g~-v~~~~ 721 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS----DGV-TRVFS 721 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC----CCe-EEEEe
Confidence 99999877653 233110 12346789985577788888889999999985 221 11111
Q ss_pred ---------c------ccccEEEEEEcCCCCEE-EEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccc
Q 011216 314 ---------G------HLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 314 ---------~------~~~~i~~i~~sp~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
+ .......|+++|+++.| ++-+.++.|++||+.+......... + ...+.. ..
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg-------~---~~~~~~--l~ 789 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG-------D---PTFSDN--LF 789 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec-------c---cccCcc--cc
Confidence 0 11235679999999854 5556678999999876431100000 0 000000 00
Q ss_pred cCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec-------------CCCCCee
Q 011216 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------------YHTSPVR 444 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------------~h~~~v~ 444 (491)
..... .+.. ..........++++++|+++++-..++.|++||..++....... +.-....
T Consensus 790 ~fG~~------dG~g-~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 790 KFGDH------DGVG-SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cccCC------CCch-hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00000 0000 00000111233567789988888889999999998776543321 1123567
Q ss_pred eeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 445 DCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 445 ~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.++++++|+++++-+.++.|++||+.++.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 89999999988888899999999998764
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.24 E-value=1.1e-08 Score=91.70 Aligned_cols=190 Identities=19% Similarity=0.178 Sum_probs=134.5
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-cCC-----c---eeEEEeE-eCC-CCceEEEEecCCeEEEEECC
Q 011216 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL-----R---WTVTDTS-LSP-DQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 131 ~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~-----~---~~v~~l~-~sp-~~~~l~~~~~dg~i~iwd~~ 199 (491)
-.+.||+.++.. ..|.|.+||.++.. +.++... .-. . .+..-+. |++ +|.+++..|. |...|.+..
T Consensus 273 ~~nsDGkrIvFq-~~GdIylydP~td~-lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~ 349 (668)
T COG4946 273 NANSDGKRIVFQ-NAGDIYLYDPETDS-LEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW 349 (668)
T ss_pred ccCCCCcEEEEe-cCCcEEEeCCCcCc-ceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC
Confidence 345578777654 56789999988763 2222111 100 0 0111122 444 6788888774 666776665
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC-eEEEEECCCCeeeEEEeccCCCeEEEEEe
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (491)
.+-.+.+ +|...|.-..+..+++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+
T Consensus 350 ~~~~iqv------------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs 410 (668)
T COG4946 350 DGYSIQV------------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVS 410 (668)
T ss_pred CCeeEEc------------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEc
Confidence 5544332 3444788888888888899999999 899999998875 4555677889999997
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC----cEEEeeCCC
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----AIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg----~i~iwd~~~ 347 (491)
+++..++.+.....+-+.|+. ++.....-+...+-|+.++|||+++++|-+--+| .|+++|+..
T Consensus 411 -~dGK~~vvaNdr~el~vidid----ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 411 -PDGKKVVVANDRFELWVIDID----NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred -CCCcEEEEEcCceEEEEEEec----CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 889999999998899999997 5555544455567799999999999999876654 689999886
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=2.1e-08 Score=95.05 Aligned_cols=261 Identities=17% Similarity=0.138 Sum_probs=157.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
++..+++++.+|.+..+|..+|+.+-+.... ..+.+.... .+..++.++.++.|..||.++|+............
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~----~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS----SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC----ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 4677888889999999999988665443221 122211111 34567777889999999999988654433221100
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc-C---CC------e-EEEEEecCCCC
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-T---SD------V-NTVCFGDESGH 283 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~---~~------v-~~i~~~~~~~~ 283 (491)
. . ... .+.... +..++.+..++.+..+|..+++.+...... . .. + ....+ .+.
T Consensus 179 ~--~-----~~~----~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~ 242 (377)
T TIGR03300 179 T--L-----RGS----ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGG 242 (377)
T ss_pred e--e-----cCC----CCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECC
Confidence 0 0 000 011111 246788888899999999998765443211 0 00 1 11122 245
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccccee
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.++.++.+|.+..||.. .++.+..... ........ .+..+++++.+|.+..+|..+++....
T Consensus 243 ~vy~~~~~g~l~a~d~~----tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~---------- 304 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLR----SGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWK---------- 304 (377)
T ss_pred EEEEEEcCCEEEEEECC----CCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEc----------
Confidence 78888899999999987 5555444331 11112222 456788888999999999977432111
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCe
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 443 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 443 (491)
..... . ....+|.. .+..|++++.+|.|+++|..+|+.+..++.+...+
T Consensus 305 ------------------------~~~~~--~---~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~ 353 (377)
T TIGR03300 305 ------------------------NDELK--Y---RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI 353 (377)
T ss_pred ------------------------ccccc--C---CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc
Confidence 10000 0 00111222 36688999999999999999999999888666443
Q ss_pred e-eeEecCCCCeEEEEECCCcEEEe
Q 011216 444 R-DCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 444 ~-~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
. +..+. ++ .|+.++.||.|+.+
T Consensus 354 ~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 354 ASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ccCCEEE-CC-EEEEEeCCceEEEe
Confidence 3 33332 33 58888899999876
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.21 E-value=2.4e-10 Score=100.17 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC---eEEEEECCCCcc
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTM 203 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg---~i~iwd~~~~~~ 203 (491)
...+..++++++||.+..+....++++....+..+..........-+++.|..+......+...| .+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34556788888888888887777777665432111111112222344555555555455444333 455555444333
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe-ccCCCeEEEEEecCCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG 282 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~ 282 (491)
.. ..||-..+++++|+||+++|+++..|..|++-....-..+..+. +|...|..++.- ++
T Consensus 145 ~~-----------------~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~ 205 (390)
T KOG3914|consen 145 EP-----------------ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DN 205 (390)
T ss_pred ch-----------------hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cC
Confidence 22 23688899999999999999999999999998887665555443 899999999995 46
Q ss_pred CEEEEEeCCCeEEEEeCccccCCCcceeee
Q 011216 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 283 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 312 (491)
..|++++.|++|++||++ +++.+..+
T Consensus 206 ~~LlS~sGD~tlr~Wd~~----sgk~L~t~ 231 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDIT----SGKLLDTC 231 (390)
T ss_pred ceeeecCCCCcEEEEecc----cCCccccc
Confidence 679999999999999998 66665443
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.4e-10 Score=105.42 Aligned_cols=285 Identities=11% Similarity=0.136 Sum_probs=186.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEE---EEEeeccCCceeEEEeEeCCCCceEEEEecCCeE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKI---QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~-~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i 193 (491)
..+.+|+..|..++--.+.+-+++++.|.+|++|.+... ..+ .-..+...|..+|.++.|-.+.++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 456799999999977777788999999999999998643 111 2345667888899999999999888765 7899
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCEEEEE-ecCCeEEEEECCCCeeeEEEe----
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAG-SSDDCIYVYDLEANKLSLRIL---- 266 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~---- 266 (491)
++||.--++......-... | +.+..+..-+ +...+++| +...+|+++|.+..+....++
T Consensus 807 HlWDPFigr~Laq~~dapk-------------~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPK-------------E-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred eeecccccchhHhhhcCcc-------------c-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 9999876665432211110 1 0222233333 33344444 678899999999988766665
Q ss_pred -ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEE-ee
Q 011216 267 -AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL-WD 344 (491)
Q Consensus 267 -~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~i-wd 344 (491)
+.+..+.+++.. +.|++++.+-..|.|.+.|.| +++.+..+....-....++ .|..+.|+....|.++.+ |-
T Consensus 873 ~~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR----~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 873 PGPNALTRAIAVA-DKGNKLAAALSNGCIAILDAR----NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred CCCchheeEEEec-cCcchhhHHhcCCcEEEEecC----CCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 344668999997 889999999999999999998 7777776655444443443 345567777777888887 76
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 424 (491)
...+.. .+........ ..|-.. -|.-|+++.....+.+
T Consensus 947 aldgim------------------------------------h~q~kpppep---ahflqs---vgpSLV~a~~Gn~lgV 984 (1034)
T KOG4190|consen 947 ALDGIM------------------------------------HLQDKPPPEP---AHFLQS---VGPSLVTAQNGNILGV 984 (1034)
T ss_pred hcCCee------------------------------------eeccCCCCcc---hhhhhc---cCceeEEeccCcEEEE
Confidence 544211 1111100000 001111 2455677766667777
Q ss_pred EECCC----ccEEEEec--CCCCCeeeeEecCCCCeEEEEECCCcEEE
Q 011216 425 YDLVS----GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 425 wd~~~----~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~Dg~i~i 466 (491)
|.-.. ...+..++ ...+..++++--|-+.-+..|...|.|.+
T Consensus 985 Yad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 985 YADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred EecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 75211 11122232 24567888888888887888888888875
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.18 E-value=5.7e-08 Score=82.15 Aligned_cols=237 Identities=17% Similarity=0.126 Sum_probs=133.6
Q ss_pred eEeCCCCceEEEEecCCeEEEEECCCCc--cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEE
Q 011216 175 TSLSPDQRHLVYASMSPIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (491)
Q Consensus 175 l~~sp~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~ 252 (491)
++.+++|+.||+. .|..|.|-..++.= ......++.... -.-.-++||||+..||.+...|+|+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~-------------PQWRkl~WSpD~tlLa~a~S~G~i~ 68 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN-------------PQWRKLAWSPDCTLLAYAESTGTIR 68 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC-------------chheEEEECCCCcEEEEEcCCCeEE
Confidence 5667888877765 46666666554321 111112211111 0456799999999999999999999
Q ss_pred EEECCCCeeeEEEec-------cCCCeEEEEEecCC-----CCEEEEEeCCCeEEEEeCccc-cCCCcceee--ec-ccc
Q 011216 253 VYDLEANKLSLRILA-------HTSDVNTVCFGDES-----GHLIYSGSDDNLCKVWDRRCL-NVKGKPAGV--LM-GHL 316 (491)
Q Consensus 253 vwd~~~~~~~~~~~~-------~~~~v~~i~~~~~~-----~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~--~~-~~~ 316 (491)
++|+..... ..+.. -...|..+.|.+.. ...|++-..+|.++-|-+... ......... +. .+.
T Consensus 69 vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 69 VFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP 147 (282)
T ss_pred EEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence 999976443 23321 23567777786433 235667777888877765311 112222222 22 246
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee
Q 011216 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
..|.++.++|..++|++|+.... .+...... .--+..++--
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s~a~----------------------------~~GLtaWRiL----- 188 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQN------QDGMSKAS----------------------------SCGLTAWRIL----- 188 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCC------CCcccccc----------------------------ccCceEEEEc-----
Confidence 78999999999998888765432 00000000 0001111100
Q ss_pred eEEEEecCcccCCCcEEEEEecCC------eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 397 LIRCHFSPVYSTGQKYIYTGSHDS------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~g~~dg------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.-+|..+.+ +...|+ +-.+|.+-+.+...........|..+..||||..||+...+|.|.+|+++
T Consensus 189 --------~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 189 --------SDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred --------CCCCcEEEc-cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 001111111 111111 12344443332222222346779999999999999999999999999998
Q ss_pred CCCC
Q 011216 471 GNGE 474 (491)
Q Consensus 471 ~~~~ 474 (491)
+-..
T Consensus 260 sL~~ 263 (282)
T PF15492_consen 260 SLRL 263 (282)
T ss_pred cchh
Confidence 7543
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.4e-08 Score=93.52 Aligned_cols=209 Identities=14% Similarity=0.111 Sum_probs=125.0
Q ss_pred eEEEeEeCCCCce-EEEEecC---CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe
Q 011216 171 TVTDTSLSPDQRH-LVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 171 ~v~~l~~sp~~~~-l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~ 246 (491)
.+....|+|||+. ++..+.+ ..|.++|+.+++...+.... +......|+|||+.|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEE
Confidence 5778999999985 6655544 47999999888765544311 1355678999998776543
Q ss_pred c---CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-CCC--eEEEEeCccccCCCcceeeeccccccEE
Q 011216 247 S---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDN--LCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 247 ~---dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
. +..|+++|+.+++. ..+..+........|+ |+++.|+..+ ..+ .|.+.|+. .+... .+..... .
T Consensus 252 ~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~----~g~~~-rlt~~g~--~ 322 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLN----SGSVE-QVVFHGK--N 322 (419)
T ss_pred ccCCCcEEEEEECCCCcE-EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECC----CCCeE-eCccCCC--c
Confidence 2 35788999888764 3444444434456898 6676555554 344 56666765 33322 2221111 1
Q ss_pred EEEEcCCCCEEEEeeCC---------CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc
Q 011216 321 FIDSRGDGRYLISNGKD---------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
...|+|||+.|+..+.. ..|.+.|+.+.. ...+...
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----------------------------------~~~LT~~ 367 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----------------------------------IRRLTAN 367 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------------------------------eEECCCC
Confidence 24899999998876643 256666765521 1122111
Q ss_pred ceeeeeEEEEecCcccCCCcEEEEEecCC---eEEEEECCCccEEEEecCCCCCeeeeEe
Q 011216 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 448 (491)
. ....|.|+|||+.|+....++ .+.+.++. |.....+....+.+...+|
T Consensus 368 ~-------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 368 G-------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred C-------CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccCCCCC
Confidence 0 123478999999887766532 47777774 4444444444455554444
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.15 E-value=6.6e-08 Score=81.78 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=94.7
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccccc
Q 011216 130 SQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 130 ~~~s~dg~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (491)
++.++||++||+- .|..|.|-...++. .+.+....+...-.=+.++||||+..||.+...|+|+++|+.......+.
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 6788999988877 56688887766541 12222222332334578999999999999999999999999865443222
Q ss_pred ceeccccccccccCCCCCceecEEEEEEcCCC------CEEEEEecCCeEEEEECCCC--e---eeEE--Ee-ccCCCeE
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------RELVAGSSDDCIYVYDLEAN--K---LSLR--IL-AHTSDVN 273 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~------~~l~~~~~dg~i~vwd~~~~--~---~~~~--~~-~~~~~v~ 273 (491)
. ... +. +.-...|..+.|.+.. ..|++-...|.++-|-+..+ + .... +. .+...|+
T Consensus 82 p-~~~-----~~----~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 82 P-AMS-----FP----GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred c-ccc-----cC----CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 2 111 11 1123367777776522 25667777888877765322 1 2222 22 2467899
Q ss_pred EEEEecCCCCEEEEEeCC
Q 011216 274 TVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~d 291 (491)
++.|+ +..++|+.|+..
T Consensus 152 ~~vy~-p~h~LLlVgG~~ 168 (282)
T PF15492_consen 152 SAVYH-PKHRLLLVGGCE 168 (282)
T ss_pred EEEEc-CCCCEEEEeccC
Confidence 99998 666777777643
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=5.8e-09 Score=86.63 Aligned_cols=195 Identities=15% Similarity=0.062 Sum_probs=130.7
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeeEEE-eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc
Q 011216 238 DGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
...+|+.|+..|...+|...+.+....+ ..|...|+-+.-.-....-+..++.|.++++.++. -+.... ..|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~----~~s~~~--~~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS----GDSNKF--AVHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe----cCcccc--eeec
Confidence 3458999999999999999876644333 34444333221111223346678889999999885 211111 1233
Q ss_pred c--cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 317 E--GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 317 ~--~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
. .+.++++++|++++++.+....|-.|.+..... ..+.+.....
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--------------------------------y~~~~~~a~t-- 202 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--------------------------------YIENIYEAPT-- 202 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--------------------------------eeeeeEeccc--
Confidence 3 378899999999999999999999999876321 1122121111
Q ss_pred eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE-E----EecCCCCCeeeeEecCCCC--eEEEEECCCcEEEe
Q 011216 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-A----ALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRW 467 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~----~~~~h~~~v~~~~~s~~~~--~l~s~~~Dg~i~iw 467 (491)
...-|+..|+.....+|++..||.+.|||++..... . +-..|.+.++.+.|++.|. +|...-.-+.+.+-
T Consensus 203 ---~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 203 ---SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred ---CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 123355577778899999999999999999864332 2 2236889999999998776 55555556789999
Q ss_pred cCCCCCCC
Q 011216 468 EFPGNGEA 475 (491)
Q Consensus 468 ~~~~~~~~ 475 (491)
|+++....
T Consensus 280 D~R~~~~~ 287 (344)
T KOG4532|consen 280 DTRNYVNH 287 (344)
T ss_pred EcccCcee
Confidence 99887644
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.13 E-value=2.5e-08 Score=82.96 Aligned_cols=195 Identities=12% Similarity=0.028 Sum_probs=130.0
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeE-eCCCCceEEEEecCCeEEEEECCCCccccccceecccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS-LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~-~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
-.+||.|+..|...+|...+.+...... ..+...|+-+. ..-..-.+..++.|.++++.+++.+........+.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~c--d~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--- 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQC--DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--- 158 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeee--cccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence 3589999999999999998753333221 22222222111 11122346678889999999887655433222111
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee--eE-EEeccCCCeEEEEEecCCCCEEEEEeCC
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL--SL-RILAHTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~--~~-~~~~~~~~v~~i~~~~~~~~~l~s~s~d 291 (491)
-.+.++++++|++++++.+....|..|.+..... +. ......+.-.+..|+ .....+|++..|
T Consensus 159 -------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 159 -------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQD 224 (344)
T ss_pred -------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecC
Confidence 0378899999999999999999999999865432 22 222344556788897 778899999999
Q ss_pred CeEEEEeCccccCCCcce-eeeccccccEEEEEEcCCCC--EEEEeeCCCcEEEeeCCCCC
Q 011216 292 NLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 292 g~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~i~~sp~~~--~l~~~~~dg~i~iwd~~~~~ 349 (491)
|++.|||+|.....-..+ ..-..|.+.+..+.|++-|. +|...-.-+.+.+.|+++..
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999999998543222211 22345888999999998653 34444445679999999854
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.13 E-value=5.8e-08 Score=88.04 Aligned_cols=278 Identities=15% Similarity=0.187 Sum_probs=163.7
Q ss_pred CCceEEEEEcCCCCEEEEEECC---------------CeEEEEECCCCeEEEEEeeccCCceeEE-EeEeCCCCceEEEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQA---------------SQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYA 187 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~d---------------g~i~vw~~~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~~~ 187 (491)
...|+-+.|||.++||.+=+.. ..+.|||..++..+......... .... -+.|+-+.++++-.
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-YLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-ccccceeeeeecchhhhhh
Confidence 4578999999999999985533 35999999998655543322221 1122 46788888777655
Q ss_pred ecCCeEEEEECCCCccccccc-eeccccccccccCCCCCcee----------------------------------cEEE
Q 011216 188 SMSPIVHIVDVGSGTMESLAN-VTEIHDGLDFSAADDGGYSF----------------------------------GIFS 232 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~----------------------------------~v~~ 232 (491)
....++|+++ ++....... ......-.+|.....+.|.. .=..
T Consensus 150 -v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 -VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred -ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 2346888886 332211110 00000001111111111100 1124
Q ss_pred EEEcCCCCEEEEEe-----------cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEE--EeCCCeEEEEeC
Q 011216 233 LKFSTDGRELVAGS-----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS--GSDDNLCKVWDR 299 (491)
Q Consensus 233 i~~s~~~~~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s--~s~dg~i~iwd~ 299 (491)
+.|.+.|++|++-- ....++++++....+.... .-.++|...+|.|. ++.+++ |-.+..+.++|+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~-S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPL-SSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeeccc-CCceeEEecccccceeeccc
Confidence 56788888765431 1245888888755443333 56889999999854 444433 357888999998
Q ss_pred ccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC---CcEEEeeCCCCCCccccccCcccceeeceeecCCCCccc
Q 011216 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
+ +.. .+......=..+.|+|.+++++.++-| |.+-+||....-
T Consensus 306 r-----~Nl--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf--------------------------- 351 (561)
T COG5354 306 R-----GNL--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF--------------------------- 351 (561)
T ss_pred c-----cce--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCce---------------------------
Confidence 6 332 233344455678899999999998765 568999876521
Q ss_pred ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec------CCeEEEEECCCccEEEEecCCCCCeeeeEecC
Q 011216 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 450 (491)
..+..+.+... .. ..|+||+.++.+... |..|.|||+... .+. ..+.+.|.|
T Consensus 352 ------~~~~~~~~~n~----s~----~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~f-------el~~~~W~p 409 (561)
T COG5354 352 ------KVAGAFNGLNT----SY----CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KVF-------ELTNITWDP 409 (561)
T ss_pred ------EEEEEeecCCc----eE----eeccCCceEEEecCCCcccccCcceEEEEecCc-hhh-------hhhhccccC
Confidence 11212332221 11 157889999887643 778999998533 222 345667777
Q ss_pred CCCeEEEEECCC
Q 011216 451 SQPMLVSSSWDG 462 (491)
Q Consensus 451 ~~~~l~s~~~Dg 462 (491)
.+++..+.+.+.
T Consensus 410 ~~~~~ttsSs~~ 421 (561)
T COG5354 410 SGQYVTTSSSCP 421 (561)
T ss_pred CcccceeeccCC
Confidence 777666555544
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=7e-08 Score=91.41 Aligned_cols=195 Identities=11% Similarity=-0.017 Sum_probs=120.2
Q ss_pred cEEEEEEcCCCCE-EEEEec---CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEE-EEEeCC--CeEEEEeCcc
Q 011216 229 GIFSLKFSTDGRE-LVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDD--NLCKVWDRRC 301 (491)
Q Consensus 229 ~v~~i~~s~~~~~-l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~s~d--g~i~iwd~~~ 301 (491)
......|+|||+. ++..+. +..|+++|+.+++..... ...+......|+ |+++.+ ++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~- 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN- 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC-
Confidence 4667899999985 554443 356999999888764433 455556678898 566544 455444 457777774
Q ss_pred ccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCccccc
Q 011216 302 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
.+ ....+..+........|+|||+.|+..+. .+ .|.+.|+.+...
T Consensus 266 ---~g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---------------------------- 313 (419)
T PRK04043 266 ---TK-TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---------------------------- 313 (419)
T ss_pred ---CC-cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe----------------------------
Confidence 33 33444444333445689999998876653 23 477777765321
Q ss_pred CCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC---------CeEEEEECCCccEEEEecCCCCCeeeeEec
Q 011216 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
..+..... ..+.|||||++|+..... ..|++.|+.++... .+... .......|+
T Consensus 314 -------~rlt~~g~--------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~S 376 (419)
T PRK04043 314 -------EQVVFHGK--------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFS 376 (419)
T ss_pred -------EeCccCCC--------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEEC
Confidence 11110000 123688899988877653 37889999887653 34332 233468999
Q ss_pred CCCCeEEEEECC-C--cEEEecCCCCCCC
Q 011216 450 PSQPMLVSSSWD-G--DVVRWEFPGNGEA 475 (491)
Q Consensus 450 ~~~~~l~s~~~D-g--~i~iw~~~~~~~~ 475 (491)
|||+.|+..+.+ + .+.+.++......
T Consensus 377 PDG~~I~f~~~~~~~~~L~~~~l~g~~~~ 405 (419)
T PRK04043 377 SDGGSIMFIKYLGNQSALGIIRLNYNKSF 405 (419)
T ss_pred CCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence 999977766543 2 3666666654433
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.11 E-value=3.4e-09 Score=87.61 Aligned_cols=202 Identities=19% Similarity=0.277 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---------ccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---------AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~---------~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
|..+.|+.+- .|+++..++.+.......+........ ...+.++-.+-+.+--++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 6667776553 466666666655555443322111100 001111111112222356789999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-----cCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-----SDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
.+.- .....+....+ . .-.+.++...++.+.++. .-+..+.|+++..+.+..-......|
T Consensus 118 ~~~~-~~~~~~i~~~~-------------~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v 182 (319)
T KOG4714|consen 118 TDKD-LALMSRIPSIH-------------S-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAV 182 (319)
T ss_pred chHH-Hhhhhhccccc-------------c-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccccc
Confidence 7651 11111111111 1 112223333444444332 12346667765544332222233459
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.+++-+|...+++++|+.||.+-+||.|.. ..+...+..|..+|..+-|+| ++..|++++.||.+..||..+
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999888899999999999999999833 456667889999999999999 578899999999999999875
No 288
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.11 E-value=2.7e-07 Score=95.33 Aligned_cols=284 Identities=12% Similarity=0.155 Sum_probs=169.0
Q ss_pred CceEEEEEcCCCCEEEEEEC--CC--eEEEEECCCCeEEEEEeec-----cCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 125 SRAYVSQFSADGSLFVAGFQ--AS--QIRIYDVERGWKIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~--dg--~i~vw~~~~~~~~~~~~~~-----~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
..+...+|.+..+.+..... .. .|.+............... ......|.++.+-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 45667777776654443332 22 3444443333211222221 123457999999999999999999999999
Q ss_pred E----ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC--------------
Q 011216 196 V----DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-------------- 257 (491)
Q Consensus 196 w----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~-------------- 257 (491)
. +..+........+ ..+|.+++||||+..|+..+.++++.+.+..
T Consensus 102 ~~~~~~~~~~~~E~VG~v-----------------d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~ 164 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSV-----------------DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDF 164 (928)
T ss_pred EEccCCCCCceeEEEEEE-----------------cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCcccc
Confidence 9 5554444333222 2279999999999999999999998886532
Q ss_pred -C--------CeeeEEEec------------------------cCCCeEEEEEecCCCCEEEEEeC---C---CeEEEEe
Q 011216 258 -A--------NKLSLRILA------------------------HTSDVNTVCFGDESGHLIYSGSD---D---NLCKVWD 298 (491)
Q Consensus 258 -~--------~~~~~~~~~------------------------~~~~v~~i~~~~~~~~~l~s~s~---d---g~i~iwd 298 (491)
. |+....|.| +...-..|+|- .||.+|++.+. . ..++||+
T Consensus 165 ~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWR-GDG~yFAVss~~~~~~~~R~iRVy~ 243 (928)
T PF04762_consen 165 GESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWR-GDGEYFAVSSVEPETGSRRVIRVYS 243 (928)
T ss_pred CCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEEC-CCCcEEEEEEEEcCCCceeEEEEEC
Confidence 0 111111110 22345678896 89999998874 2 5799999
Q ss_pred CccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC---CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcc
Q 011216 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 375 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (491)
.. +.....-..-.+--.+++|.|.|++||+.-. ...|.+|.-+.....
T Consensus 244 Re-----G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhg------------------------ 294 (928)
T PF04762_consen 244 RE-----GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHG------------------------ 294 (928)
T ss_pred CC-----ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEee------------------------
Confidence 63 3332222222222346899999999998754 234666664432110
Q ss_pred cccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE--EEEecC-CCCCeeeeEecCCC
Q 011216 376 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKY-HTSPVRDCSWHPSQ 452 (491)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~-h~~~v~~~~~s~~~ 452 (491)
. ..+........+ ....|++|+..||....|. |.+|-..+..- ...+.. ....+..+.|+|..
T Consensus 295 -------e--F~l~~~~~~~~v----~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 295 -------E--FTLRFDPEEEKV----IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred -------e--EecCCCCCCcee----eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 0 011100001111 3346777999999987666 99999877542 223332 23345569999976
Q ss_pred C-eEEEEECCCcEEEecC
Q 011216 453 P-MLVSSSWDGDVVRWEF 469 (491)
Q Consensus 453 ~-~l~s~~~Dg~i~iw~~ 469 (491)
. .|.....+|.+..+++
T Consensus 361 p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 361 PLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCEEEEEecCCcEEEEEE
Confidence 5 5666666677655443
No 289
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=2.9e-09 Score=93.47 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=110.3
Q ss_pred EEEeEeCCCCceEEEEecCCeEEEEECCCCcc-ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---
Q 011216 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--- 247 (491)
Q Consensus 172 v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--- 247 (491)
+..+..+|.+++|+++..+....++++..... .......... ...+++.|..+......+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--------------~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--------------KRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--------------cCcceeeeeeccceEEEEeecCC
Confidence 44556788888999888888877777654432 1111111100 03344555554444554444
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcC
Q 011216 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRG 326 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp 326 (491)
...+.+|....+... .+.+|-..+..++|+ +|+++|+++..|..|++-... ....+..+ .||.+-|..++.-+
T Consensus 131 ~~~~di~s~~~~~~~-~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~yp----a~f~IesfclGH~eFVS~isl~~ 204 (390)
T KOG3914|consen 131 VYSFDILSADSGRCE-PILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYP----ATFVIESFCLGHKEFVSTISLTD 204 (390)
T ss_pred ceeeeeecccccCcc-hhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecC----cccchhhhccccHhheeeeeecc
Confidence 445556655554443 344999999999998 788999999999999998775 33444443 57999999999886
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCCccc
Q 011216 327 DGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (491)
+ ..|++++.|++|++||+++++....
T Consensus 205 ~-~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 205 N-YLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred C-ceeeecCCCCcEEEEecccCCcccc
Confidence 5 4589999999999999999776533
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.2e-07 Score=86.81 Aligned_cols=290 Identities=13% Similarity=0.076 Sum_probs=169.1
Q ss_pred EEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCce
Q 011216 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS 227 (491)
Q Consensus 148 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 227 (491)
...|+...... .......++.-+-+.|||.|.||++--.-| |.+|--.+-.....+. |.
T Consensus 192 svfwN~~~n~p---~~ie~RenWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-----------------Hp 250 (698)
T KOG2314|consen 192 SVFWNSKFNEP---SLIEERENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-----------------HP 250 (698)
T ss_pred EEEccccCCch---hhhhhhhcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-----------------CC
Confidence 55677654311 112233456678899999999999977655 8899654433333222 11
Q ss_pred ecEEEEEEcCCCCEEEEEec-----------CCeEEEEECCCCeeeEEEeccC--CCe-EEEEEecCCCCEEEEEeCCCe
Q 011216 228 FGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHT--SDV-NTVCFGDESGHLIYSGSDDNL 293 (491)
Q Consensus 228 ~~v~~i~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~--~~v-~~i~~~~~~~~~l~s~s~dg~ 293 (491)
.|.-+.|||..+||++-+. ...++|||+.+|...+.+.... ..+ .-+.|| .++.++|.-.. ..
T Consensus 251 -~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 -GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NS 327 (698)
T ss_pred -CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEecc-ce
Confidence 5888999999999998653 2469999999999887776422 222 345787 78888887666 57
Q ss_pred EEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-----CcEEEeeCCCCCCccccccCcccceeeceee
Q 011216 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
|.||+.. ...++..-.-.-.+|....|+|.+++||.-... ..+.+..+.+++.....+... +.| .-+
T Consensus 328 isIyEtp----sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn---VsD-ckL 399 (698)
T KOG2314|consen 328 ISIYETP----SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN---VSD-CKL 399 (698)
T ss_pred EEEEecC----ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee---eec-cEE
Confidence 8899875 222222222234678888999998887753321 234444444433322211100 000 011
Q ss_pred cCCCCcccccC-----------CCCCe--eEEEcccce---eeeeEEEEecCcccCCCcEEEEEec---CCeEEEEECCC
Q 011216 369 DYPPQARDLKH-----------PCDQS--VATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVS 429 (491)
Q Consensus 369 ~~~~~~~~~~~-----------~~~~~--~~~~~~~~~---~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~ 429 (491)
.|..++..+.. .+-.. +..+..... ...+....+.-+|-|.|..+++-+. ..++.+|.+.+
T Consensus 400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 12222211111 11111 111111111 1122233455577888887776554 35788998763
Q ss_pred -c---cEEEEecCCCCCeeeeEecCCCCeEEEE---ECCCcEEEecCCC
Q 011216 430 -G---EQVAALKYHTSPVRDCSWHPSQPMLVSS---SWDGDVVRWEFPG 471 (491)
Q Consensus 430 -~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~---~~Dg~i~iw~~~~ 471 (491)
. +.+..+. ....+.+.|+|.|++++.+ |..|.+.++|+..
T Consensus 480 ~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 480 NIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 2 2344443 2457889999999988876 4578999999884
No 291
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.05 E-value=7.1e-07 Score=79.00 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=138.1
Q ss_pred EeEeCC-CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEc-CCCCEEEEEecCCeE
Q 011216 174 DTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGSSDDCI 251 (491)
Q Consensus 174 ~l~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~~~~~dg~i 251 (491)
+++|.+ ++.++++--..+.|..|+..++....... . ....+++. +++ .|+++...+ +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~------------------~~~G~~~~~~~g-~l~v~~~~~-~ 62 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-P------------------GPNGMAFDRPDG-RLYVADSGG-I 62 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-S------------------SEEEEEEECTTS-EEEEEETTC-E
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-C------------------CCceEEEEccCC-EEEEEEcCc-e
Confidence 567888 56666666678899999998876532111 0 25667777 565 456555555 5
Q ss_pred EEEECCCCeeeEEEec-----cCCCeEEEEEecCCCCEEEEEeCC--------CeEEEEeCccccCCCcceeeecccccc
Q 011216 252 YVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
.++|..+++....... .....+.+++. +++++.++.... |.|..++.. ..+..+......
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------~~~~~~~~~~~~ 135 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD------GKVTVVADGLGF 135 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT------SEEEEEEEEESS
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC------CeEEEEecCccc
Confidence 6669998865443332 33567889997 788877776544 446666642 233334444566
Q ss_pred EEEEEEcCCCCEEE-EeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeee
Q 011216 319 ITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 319 i~~i~~sp~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.+.|+|+|+++.|+ +-+..+.|..+++......... ...+..+.... ...
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~--g~p 186 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN---------------------------RRVFIDFPGGP--GYP 186 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE---------------------------EEEEEE-SSSS--CEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceee---------------------------eeeEEEcCCCC--cCC
Confidence 78999999999776 5566778888888642210000 01111111111 011
Q ss_pred EEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEec-CCCCeEEEE
Q 011216 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSS 458 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~ 458 (491)
- .++++.+|++.++....+.|.++|.. |+.+..+......+++++|. ++.+.|+..
T Consensus 187 D----G~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 187 D----GLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp E----EEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred C----cceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 1 12456689888887788999999986 99888887665689999994 666655544
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=93.63 Aligned_cols=177 Identities=21% Similarity=0.336 Sum_probs=129.9
Q ss_pred EEEcCC--CCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC-Ccce
Q 011216 233 LKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPA 309 (491)
Q Consensus 233 i~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~ 309 (491)
++|+-+ |-. ++.+.+-.|-+-|++++.. ..+ ...+.|.++.|. ..+++++.|...|.|..+|+|+...- +.+.
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeecccc-ccc-ccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 355532 333 4455566789999988754 233 367889999997 77899999999999999999966322 3333
Q ss_pred eeeccccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 310 GVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 310 ~~~~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
..+ -|...|+++..-. ++++|++.+.+|.|++||++..+. ...+.++
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qY 340 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQY 340 (425)
T ss_pred EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeee
Confidence 333 4888999988766 788999999999999999997432 3458899
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC----CCeeeeEec
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT----SPVRDCSWH 449 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~s 449 (491)
.||......+.... .+....+++++.|-..+||.+++|.++.++.... ..+.+++|.
T Consensus 341 eGHvN~~a~l~~~v----~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 341 EGHVNLSAYLPAHV----KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eccccccccccccc----ccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99986655544333 3457788889999999999999999998886332 234555553
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=6e-08 Score=92.31 Aligned_cols=289 Identities=13% Similarity=0.078 Sum_probs=180.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC------------ceEEEEecCCeEE
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ------------RHLVYASMSPIVH 194 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~------------~~l~~~~~dg~i~ 194 (491)
-.++.|+|.| ++|-|+. ..|.|-|..+-+.++ ....|...|+.+.|.|.. -.|+++...|.|.
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 5678999988 5666654 478888877654444 335566789999998732 2566677789999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC---CC-CEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
+||...+.....+. .|..++..++|-+ +. ..|++-.....+.+|+..+|+..-.......
T Consensus 93 l~d~~~~s~~~~l~----------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 93 LVDFVLASVINWLS----------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred EEEehhhhhhhhhc----------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 99998776544433 2444778888876 34 3566667778899999999998877766667
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc---CCCcceeeecccccc-------------------------EEEE
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---VKGKPAGVLMGHLEG-------------------------ITFI 322 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~-------------------------i~~i 322 (491)
...|+.+.|-+.+.+..-+..|.+.+-+.-... ..++..+.-..|.+. ...+
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f 236 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF 236 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh
Confidence 778899988888888888888888887754221 122222222222220 0124
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
+|+|.-+.++.......+.++|++-. ..+....-.+.........
T Consensus 237 af~p~~rn~lfi~~prellv~dle~~----------------------------------~~l~vvpier~~akfv~vl- 281 (1062)
T KOG1912|consen 237 AFSPHWRNILFITFPRELLVFDLEYE----------------------------------CCLAVVPIERGGAKFVDVL- 281 (1062)
T ss_pred hcChhhhceEEEEeccceEEEcchhh----------------------------------ceeEEEEeccCCcceeEec-
Confidence 56776665555566677888888763 2333332222212222222
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCc----------------cEEEEecC-CCCCeeeeEecCC-CCeEEEEECCCcE
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSG----------------EQVAALKY-HTSPVRDCSWHPS-QPMLVSSSWDGDV 464 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~----------------~~~~~~~~-h~~~v~~~~~s~~-~~~l~s~~~Dg~i 464 (491)
| .|....|++.-.||.+.+|-.+.. ++...+.. ..-.+....-.|. ...++.--.+|.+
T Consensus 282 -P--~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~ 358 (1062)
T KOG1912|consen 282 -P--DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDS 358 (1062)
T ss_pred -c--CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchh
Confidence 2 235678999999999999986541 22221111 1112223334454 3344444567889
Q ss_pred EEecCCCCCC
Q 011216 465 VRWEFPGNGE 474 (491)
Q Consensus 465 ~iw~~~~~~~ 474 (491)
.+|.+.++..
T Consensus 359 ~~w~l~~~ri 368 (1062)
T KOG1912|consen 359 TFWQLSNGRI 368 (1062)
T ss_pred HHHhhhcCCc
Confidence 9999987543
No 294
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=1.1e-08 Score=86.83 Aligned_cols=267 Identities=14% Similarity=0.181 Sum_probs=162.4
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecc-ccccccccCCCCCceecEEEEEEcCCC--CEEEEEe
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-HDGLDFSAADDGGYSFGIFSLKFSTDG--RELVAGS 246 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~i~~s~~~--~~l~~~~ 246 (491)
..|+++.|...|.||++|...|.|.++.-+...--....+.+. ....+|..-........|..+.|..++ ..++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 3699999999999999999999999998654431111001100 000111111111122367888888654 3577778
Q ss_pred cCCeEEEEECCCCe------------------------------------------eeEEE-eccCCCeEEEEEecCCCC
Q 011216 247 SDDCIYVYDLEANK------------------------------------------LSLRI-LAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 247 ~dg~i~vwd~~~~~------------------------------------------~~~~~-~~~~~~v~~i~~~~~~~~ 283 (491)
.|.+|++|.+.... +.+.. ..|...|+++.|+ .+..
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N-sD~e 185 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN-SDKE 185 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec-Cchh
Confidence 89999999875320 00011 2466778999997 5555
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccc-----cccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
.+++ +.|-.|.+|++...+.... +..++.| ..-|++..|+|. ...+...+..|.|++-|++....-.
T Consensus 186 t~lS-aDdLrINLWnl~i~D~sFn-IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd----- 258 (460)
T COG5170 186 TLLS-ADDLRINLWNLEIIDGSFN-IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD----- 258 (460)
T ss_pred eeee-ccceeeeeccccccCCceE-EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc-----
Confidence 5554 4677899999874432222 2223333 356888999996 4566777888999999998522100
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEE----c--ccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc-
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATY----K--GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG- 430 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~- 430 (491)
.....+ . .+.....+++......|+++|+|+++-.. -+|+|||....
T Consensus 259 -------------------------n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 259 -------------------------NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred -------------------------CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 000000 0 01111122222334467789999998765 46999999764
Q ss_pred cEEEEecCCC------------CCe---eeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 431 EQVAALKYHT------------SPV---RDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 431 ~~~~~~~~h~------------~~v---~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.++.++..|. ..| ..+.||-|.+.+.+|+.....-++-..
T Consensus 313 ~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 313 NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 4666665442 223 347889898899999888877777643
No 295
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=2.9e-09 Score=100.41 Aligned_cols=276 Identities=17% Similarity=0.170 Sum_probs=169.4
Q ss_pred cCCCCCcccc-CCCCceEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC-ceEEEE
Q 011216 112 LPVNGPWPVD-QTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYA 187 (491)
Q Consensus 112 ~~~~~~~~~~-~h~~~v~~~~~s~dg--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~ 187 (491)
.|..++.-++ -..-.|-.+.|+|.. .+-++......-.+|++.....-......++|...|+++.|.|.. ..|+++
T Consensus 54 ~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 54 DPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC 133 (1081)
T ss_pred CCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec
Confidence 3444444333 233456677888754 344444455566799987654444555678899999999999976 588899
Q ss_pred ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEEEe
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL 266 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~ 266 (491)
+.|..++.||+.+....... ... -......++|+-....+.+.+....|.+||++.+. ++..++
T Consensus 134 svdt~vh~wd~rSp~~p~ys-~~~--------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K 198 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYS-TSS--------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK 198 (1081)
T ss_pred cccccceeeeccCCCcceee-eec--------------ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec
Confidence 99999999999875432111 110 11145678898755556666667789999998764 566788
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC--EEEEeeCCCcEEEee
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWD 344 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~--~l~~~~~dg~i~iwd 344 (491)
+|...|+.+.|+......+.+.+.||+|+.||...... .. ........+|..-.+.|-|. ++.---.+..+.+++
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~-~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~ 275 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ES-KRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR 275 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--cc-ceeccccCcceeccccccCceeEeccccCCeeeeecc
Confidence 89999999999866667788999999999999862211 11 11222334565556666433 222222222444444
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee--eEEEEecC--cccCCCcEEEEEecCC
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT--LIRCHFSP--VYSTGQKYIYTGSHDS 420 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~s~~~~~l~~g~~dg 420 (491)
-++....... ....+++.+|.||..... ..++.-.. .+....-.|++=+.|.
T Consensus 276 c~n~d~e~n~------------------------~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~ 331 (1081)
T KOG0309|consen 276 CENSDLEWNV------------------------FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ 331 (1081)
T ss_pred ccchhhhhcc------------------------ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC
Confidence 4432211100 001367888888874221 11111111 1222234689999999
Q ss_pred eEEEEECCC
Q 011216 421 CVYVYDLVS 429 (491)
Q Consensus 421 ~i~iwd~~~ 429 (491)
.+++|-+.+
T Consensus 332 ~lrlWpI~~ 340 (1081)
T KOG0309|consen 332 TLRLWPIDS 340 (1081)
T ss_pred ceEeeeccH
Confidence 999998754
No 296
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=4.5e-10 Score=107.81 Aligned_cols=206 Identities=21% Similarity=0.227 Sum_probs=145.7
Q ss_pred ccceecccccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCc
Q 011216 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~ 182 (491)
++..+.+|+.+. ..++.|....+|++||.+.+.|+.|+..|.|++|++.+|.. .....+|..+|+.+.-+.||.
T Consensus 1083 dr~~IFSRFr~w---~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1083 DRQFIFSRFRSW---RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred cchhhHhhcccc---hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcc
Confidence 344455566553 46788999999999999999999999999999999999833 334578888999999999998
Q ss_pred eEEEEecCC--eEEEEECCC-CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 183 HLVYASMSP--IVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 183 ~l~~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.+++.+... -..+|++.+ +.....+. .-.++.|+.....-+.|+......+||++++
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~--------------------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFD--------------------EDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccc--------------------ccceeehhhhHHHHHhcccccceEEEecccC
Confidence 888765443 478999864 11111111 3557888876555556666667999999999
Q ss_pred eeeEEEe----ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee
Q 011216 260 KLSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 260 ~~~~~~~----~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~ 335 (491)
..+.++. +.+..-++..|+ |...+++ .|| .+||+| ....+..+......+ .=.|+|+|..++..+
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~Fs-P~D~LIl---ndG--vLWDvR----~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFS-PCDTLIL---NDG--VLWDVR----IPEAIHRFDQFTDYG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccC-CCcceEe---eCc--eeeeec----cHHHHhhhhhheecc-cccccCCCceEEeec
Confidence 8776633 222334788898 5556654 444 479998 556666655443222 335999999988875
Q ss_pred CCCcEEEeeCCCCCC
Q 011216 336 KDQAIKLWDIRKMSS 350 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~ 350 (491)
.|||+++...
T Consensus 1286 -----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1286 -----EIWDMRTFKL 1295 (1516)
T ss_pred -----hhhhhHHHHH
Confidence 5899998654
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=3.8e-09 Score=96.36 Aligned_cols=248 Identities=14% Similarity=0.136 Sum_probs=156.9
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc-ccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
...+|...|..++--.+.+.+++++.|++|++|.++..-- ...... .-....|+.+|.++.|-.+.+++
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaC----------QfTY~aHkk~i~~igfL~~lr~i 799 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSAC----------QFTYQAHKKPIHDIGFLADLRSI 799 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccccee----------eeEhhhccCcccceeeeecccee
Confidence 4457777888887666778899999999999999864321 110000 00112477799999999998877
Q ss_pred EEEecCCeEEEEECCCCeeeEEEe--ccCCCeEEEEEecC-CCCEEEEE-eCCCeEEEEeCccccCCCcceeee-----c
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDE-SGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVL-----M 313 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~-----~ 313 (491)
+++ ||.|.+||.--++.+.... ...+.+..+..-+. +..+++.| +...+|+++|.| .......+ .
T Consensus 800 ~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR----sce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 800 ASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR----SCEWTCELKVCNAP 873 (1034)
T ss_pred eec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc----cccceeeEEeccCC
Confidence 765 7889999987777655332 11222233322222 44555554 788999999998 44433333 3
Q ss_pred cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce
Q 011216 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
+....+.+++..+.|+.++++-.+|.|.+.|.+++.. +..|+...
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v----------------------------------INswrpme- 918 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV----------------------------------INSWRPME- 918 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce----------------------------------eccCCccc-
Confidence 4456689999999999999999999999999998542 22222211
Q ss_pred eeeeEEEEecCcccCCCcEEEEEecCCeEEE-EECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV-YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i-wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
|..-..-.|..+.|+....|..+.+ |..-.|....+.+....+..-+ -.-|+.|+++.....+.+|.-.
T Consensus 919 ------cdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~ 988 (1034)
T KOG4190|consen 919 ------CDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADS 988 (1034)
T ss_pred ------chhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecc
Confidence 0000011234556777777888888 8876766655554333332211 1245667777666667777533
No 298
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.5e-07 Score=89.67 Aligned_cols=271 Identities=12% Similarity=0.086 Sum_probs=175.8
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-----------
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG----------- 239 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~----------- 239 (491)
.-.++.|+|.| +|+.|+ ...|.+.|..+-+.+..... |...|+.+.|.|-.
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~----------------h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL----------------HQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhcccc----------------CccceeEEEeccCCCchhccCcccc
Confidence 46678899877 566665 45788888877666554432 44579999998721
Q ss_pred -CEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC--CC-CEEEEEeCCCeEEEEeCccccCCCcceeeeccc
Q 011216 240 -RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE--SG-HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 240 -~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
-.|+++...|.|.+||...+..+..+..|.+++..++|-+. +. .+|++-....++.+|+.. ++..+......
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd----tG~k~Wk~~ys 154 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD----TGEKFWKYDYS 154 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc----CCceeeccccC
Confidence 25677778899999999999888888899999999999742 23 567777788899999987 77777777666
Q ss_pred cccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 316 LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 316 ~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
.....++.+.| |.+.+...+..|.+.+-+.-....+..... ...+..-...+.........+.....-....
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk-----~~qI~sd~Sdl~~lere~at~ns~ts~~~sa-- 227 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK-----EFQITSDHSDLAHLERETATGNSTTSTPASA-- 227 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce-----eEEEecCccchhhhhhhhhccccccCCCcch--
Confidence 67778899988 667788777888887777654333221100 0000000000000000000000000000000
Q ss_pred eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCC--eEEEEECCCcEEEecCCC
Q 011216 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~Dg~i~iw~~~~ 471 (491)
..+......+|+|.-+-++.......+.++|++-..++....-..+.+.-+.|-|+++ .|...-.||.+.+|--..
T Consensus 228 -~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 228 -YFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -hHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 0000011224566666666666677899999988888888776677777788888776 888999999999997655
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.94 E-value=7.4e-09 Score=85.64 Aligned_cols=171 Identities=8% Similarity=0.098 Sum_probs=110.5
Q ss_pred cCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec--
Q 011216 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-- 189 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-- 189 (491)
.-..+.+.+..|+++-.+-+.+-.++.+++++.||.+.+++.+....+..... ..|. .-.+.++...+..+.++..
T Consensus 77 ~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~-~~~~-~~as~~~~~~~~~i~s~~~g~ 154 (319)
T KOG4714|consen 77 DGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIP-SIHS-GSASRKICRHGNSILSGGCGN 154 (319)
T ss_pred cCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcc-cccc-cccccceeecccEEecCCcce
Confidence 34455566667777777777777888999999999999999876321111111 1111 1112223334444444321
Q ss_pred ---CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeee-EE
Q 011216 190 ---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLS-LR 264 (491)
Q Consensus 190 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~-~~ 264 (491)
-+..+.|+++..+....... -...|.+++-+|. ...+++|+.||.+-+||.+..... ..
T Consensus 155 ~n~~d~~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~ 218 (319)
T KOG4714|consen 155 WNAQDNFYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL 218 (319)
T ss_pred Eeeccceeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH
Confidence 12344454433221111100 0114888888884 456778889999999999887543 34
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
+..|+.++..+-|+|.++..|+++++||.+..||..
T Consensus 219 l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 219 LKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred HHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 568999999999999999999999999999999975
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=3.1e-06 Score=74.64 Aligned_cols=221 Identities=19% Similarity=0.201 Sum_probs=135.9
Q ss_pred CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCC
Q 011216 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
.+|.|..||..+|+.+-.......... ..+. ..+++..+++++.++.|..||..+|+.............
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~-~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-------- 70 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGG-PVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-------- 70 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSS-EEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS--------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCC-ccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc--------
Confidence 368999999999977776544222222 2222 233566778888999999999999987655554322111
Q ss_pred CCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEE-eccCC---CeEEEEEecCCCCEEEEEeCCCeEEEEeC
Q 011216 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~---~v~~i~~~~~~~~~l~s~s~dg~i~iwd~ 299 (491)
. . ..++..+++++.++.|+.+|..+++.+... ..... ........ ..+..++.+..++.|..+|+
T Consensus 71 -----~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 71 -----A----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-VDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp -----G----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-EETTEEEEEETCSEEEEEET
T ss_pred -----e----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCce-EecCEEEEEeccCcEEEEec
Confidence 1 1 123456777778889999999999988774 32211 11222222 23678888888999999999
Q ss_pred ccccCCCcceeeecccccc----------E-EEEEEcCCCCEEEEeeCCCc-EEEeeCCCCCCccccccCcccceeecee
Q 011216 300 RCLNVKGKPAGVLMGHLEG----------I-TFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~----------i-~~i~~sp~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
+ .++.+......... + ..+.+. ++ .+..++.++. +.+ |+.+..
T Consensus 140 ~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~------------------ 194 (238)
T PF13360_consen 140 K----TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGE------------------ 194 (238)
T ss_dssp T----TTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTE------------------
T ss_pred C----CCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCC------------------
Confidence 7 77776655443211 1 222333 44 6666777775 455 888732
Q ss_pred ecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEE
Q 011216 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 435 (491)
.+ +.... ... ......++..|++++.++.|..||+.+|+.+..
T Consensus 195 ----------------~~--w~~~~--~~~-----~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 195 ----------------KL--WSKPI--SGI-----YSLPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ----------------EE--EEECS--S-E-----CECEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ----------------EE--EEecC--CCc-----cCCceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 11 21110 000 001233678888888999999999999998754
No 301
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.7e-08 Score=87.23 Aligned_cols=286 Identities=10% Similarity=0.055 Sum_probs=177.8
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEEEECCCC
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd~~~~ 201 (491)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-......|...|.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 56666666554 4579999999999999986542334444455677788999999999999999777 999999999877
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCC-CC-EEEE-EecCCeEEEEECCCCee--eEEEeccCCCeEEEE
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GR-ELVA-GSSDDCIYVYDLEANKL--SLRILAHTSDVNTVC 276 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~-~l~~-~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~i~ 276 (491)
......++...+ ...++..++. .. .+++ .-.++.+.++|-....+ ...-.-|..+|.++.
T Consensus 87 DminmiKL~~lP---------------g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 87 DMINMIKLVDLP---------------GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred chhhhcccccCC---------------CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 665444433322 1112222221 11 2333 33578899999765442 223336999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCcc-ccCCCc-c---------eeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeC
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRC-LNVKGK-P---------AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~-~---------~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~ 345 (491)
++ +.+..+++....|.|..|.... .+.... . +..+........++.|+|+|..+.+-+.|..|+++++
T Consensus 152 y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 152 YN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred ee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence 98 7788889999999999999762 110011 1 1111223455678999999999999999999999999
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCee---EEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV---ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 422 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 422 (491)
+++...+.............+. +-....+.. ++.+ +.+..+.... .....|...|++|+.|+-=| |
T Consensus 231 KtGklvqeiDE~~t~~~~q~ks---~y~l~~Vel--gRRmaverelek~~~~~-----~~~~~fdes~~flly~t~~g-i 299 (558)
T KOG0882|consen 231 KTGKLVQEIDEVLTDAQYQPKS---PYGLMHVEL--GRRMAVERELEKHGSTV-----GTNAVFDESGNFLLYGTILG-I 299 (558)
T ss_pred ccchhhhhhhccchhhhhcccc---ccccceeeh--hhhhhHHhhHhhhcCcc-----cceeEEcCCCCEEEeeccee-E
Confidence 9977655543322111111110 000000000 0000 0111111111 11224556799999998877 8
Q ss_pred EEEECCCccEEEEe
Q 011216 423 YVYDLVSGEQVAAL 436 (491)
Q Consensus 423 ~iwd~~~~~~~~~~ 436 (491)
++.++.+++.+..+
T Consensus 300 kvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 300 KVINLDTNTVVRIL 313 (558)
T ss_pred EEEEeecCeEEEEe
Confidence 99999888776554
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=1.2e-05 Score=71.10 Aligned_cols=197 Identities=17% Similarity=0.152 Sum_probs=125.9
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeC-CCCceEEEEecCCeEEEEECCCCccccc
Q 011216 129 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 129 ~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (491)
+++|.+ +|.++++--..+.|..|+..++.... ..... ...+++. ++++ |+++... .+.++|..+++...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~----~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG----PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS----EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC----CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEE
Confidence 568888 77777777778999999999874322 22222 6667777 6655 4445544 456669998876655
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC--------CeEEEEECCCCeeeEEEeccCCCeEEEEEe
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (491)
....... ........+++.++|++.++.... |.|+.++.. ++... +...-...+.|+|+
T Consensus 76 ~~~~~~~-----------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGG-----------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFS 142 (246)
T ss_dssp EEEETTC-----------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEE
T ss_pred eeccCCC-----------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEEC
Confidence 5542111 012378899999999966665433 568888887 55433 33445667999998
Q ss_pred cCCCCEE-EEEeCCCeEEEEeCccccCCCc---ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 279 DESGHLI-YSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
++++.| ++-+..+.|..+++........ ....+.......-.+++..+|++.++....+.|.++|...
T Consensus 143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 666655 5667788899998852211011 1112222223477899999999888888889999999773
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.88 E-value=4.4e-06 Score=79.54 Aligned_cols=266 Identities=11% Similarity=-0.002 Sum_probs=154.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEE-----EeEeCC--CCceEEEEecCCeEEEEECCCCccccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-----DTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-----~l~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (491)
+..+++++.+|.|.-+|..+|+.+-+....... .... .+.-.| ++..++.++.++.+.-+|.++|+......
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-GWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-cccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence 456777778889999999888655443222100 0000 000111 35567778889999999999998766554
Q ss_pred eeccccccccccCCCCCceecEEE-EEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe-----EEEEEecCCC
Q 011216 209 VTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESG 282 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~v~~-i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~ 282 (491)
... .+.+ ... .+..++++..++.+..+|..+++.+-........+ .+.... +
T Consensus 148 ~~~-----------------~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~ 205 (394)
T PRK11138 148 VAG-----------------EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---F 205 (394)
T ss_pred CCC-----------------ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---C
Confidence 321 1111 111 13467778889999999999999876664321111 111121 2
Q ss_pred CEEEEEeCCCeEEEEeCccccCCCcceeeecccc-------ccEEEEEEcC--CCCEEEEeeCCCcEEEeeCCCCCCccc
Q 011216 283 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 283 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~i~~i~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (491)
..++.++.+|.+..+|.. +++.+....... .....+..+| .+..++.++.+|.+..+|..+++....
T Consensus 206 ~~v~~~~~~g~v~a~d~~----~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLME----QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWK 281 (394)
T ss_pred CEEEEEcCCCEEEEEEcc----CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEe
Confidence 356777888888888876 444333221100 0011111122 245677777889999999887432111
Q ss_pred cccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE
Q 011216 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 433 (491)
..... . ..+. ..+..|+.++.+|.++.+|..+|+.+
T Consensus 282 ----------------------------------~~~~~----~----~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 282 ----------------------------------REYGS----V----NDFA--VDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred ----------------------------------ecCCC----c----cCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence 00000 0 0011 14567888889999999999999887
Q ss_pred EEecCCC-CCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 434 AALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 434 ~~~~~h~-~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.....-. ....+... .+..|+.++.||.|++.|..+++.
T Consensus 318 W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 318 WSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 6543211 11222222 245778888999999999877653
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=87.22 Aligned_cols=150 Identities=19% Similarity=0.284 Sum_probs=109.7
Q ss_pred EEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC----e
Q 011216 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----K 260 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~----~ 260 (491)
++.+.+..|-+-|+++|-..... -++.|.++.|...++.+..|+.+|.|..+|++.+ .
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~------------------sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ------------------SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred ecccccceeEEEEeecccccccc------------------cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 34455666777777776543322 1226888899988899999999999999999765 2
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE--EEcCCCCEEEEeeCCC
Q 011216 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI--DSRGDGRYLISNGKDQ 338 (491)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i--~~sp~~~~l~~~~~dg 338 (491)
......-|.+.|+++..-.-+++.|.+.+.+|+|++||+|..+ .++.+....+|...-.-+ ...+....+++++.|-
T Consensus 290 ~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDc 368 (425)
T KOG2695|consen 290 WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDC 368 (425)
T ss_pred cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCee
Confidence 2233337999999998875478899999999999999998332 223377888886543333 3456677888899999
Q ss_pred cEEEeeCCCCCCccc
Q 011216 339 AIKLWDIRKMSSNAS 353 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~ 353 (491)
..+||.++.+....+
T Consensus 369 ytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 369 YTRIWSLDSGHLLCT 383 (425)
T ss_pred EEEEEecccCceeec
Confidence 999999998654433
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=6.7e-09 Score=62.07 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=36.9
Q ss_pred ccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 430 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
++++..+++|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 306
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.86 E-value=1.2e-06 Score=83.13 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=108.3
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
|...|.=-+++..+++++.|+.-|.+++|+-..+..... ...+..+.+..+..+++..++|.|+..|.|.++-+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 345566667788899999999999999999877632222 222233456677889999999999999999999887644
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC----eeeEEEeccCCCeEEEEEe
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~i~~~ 278 (491)
......+. ..+..|...|++++|++++..+++|...|.|..-.+... ...+.+..-.+.|-.+.+.
T Consensus 110 p~~~~~~t----------~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYVT----------PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceeec----------cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 32222222 223347889999999999999999999999999888772 1223334556778788775
Q ss_pred cCCCCEEEEEe
Q 011216 279 DESGHLIYSGS 289 (491)
Q Consensus 279 ~~~~~~l~s~s 289 (491)
++.+|++..
T Consensus 180 --q~~LLVStl 188 (726)
T KOG3621|consen 180 --QSYLLVSTL 188 (726)
T ss_pred --cceehHhhh
Confidence 444554443
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=2.1e-07 Score=90.31 Aligned_cols=182 Identities=18% Similarity=0.246 Sum_probs=132.7
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc
Q 011216 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
++..++-|+-...+..+|+.+.+..+...-..+.|.-|.. +++.+.+|...|+|.+-|.+ ..+.+..+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 4456777877788999999998877666544445666665 47899999999999999998 8889999999999
Q ss_pred cEEEEEEcCCCCEEEEeeC---------CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 318 GITFIDSRGDGRYLISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
.|..+.. .|+.|++++. |.-|+|||+|.+........ .
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-------------------------------~ 265 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-------------------------------P 265 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-------------------------------c
Confidence 9987766 5778998875 55689999998664432211 1
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC-ccE---EEEecCCCCCeeeeEecCCCCeEEEEECCCcE
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~---~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i 464 (491)
.+.. -..|.|.+ ...+++.+..|...+-|..+ +.+ +..+..-...+..++++++++.|+.+..+|.|
T Consensus 266 ~~P~------flrf~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 266 YGPQ------FLRFHPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCch------hhhhcccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 1111 11133332 34688888899999999432 122 22333334559999999999999999999999
Q ss_pred EEec
Q 011216 465 VRWE 468 (491)
Q Consensus 465 ~iw~ 468 (491)
.+|.
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9998
No 308
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=3.9e-06 Score=79.91 Aligned_cols=265 Identities=15% Similarity=0.104 Sum_probs=153.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEE-eEeCCCCceEEEEecCCeEEEEECCCCccccccceeccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 213 (491)
++..++.++.+|.+.-+|..+|+.+-+..... .+.+ ... .+..++++..++.+.-+|.++|+...........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC----ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 34567778889999999999886544432211 1211 111 2445667778899999999999876554432100
Q ss_pred cccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC-------CeEEEEEec-CCCCEE
Q 011216 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-------DVNTVCFGD-ESGHLI 285 (491)
Q Consensus 214 ~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~i~~~~-~~~~~l 285 (491)
+.. .+...++. .+..++.++.+|.+..+|..+++..-....... ....+..+| -.+..+
T Consensus 193 --~~~-----~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 193 --LTL-----RGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred --ccc-----cCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 000 00011111 123577778899999999998876544321100 001111111 124567
Q ss_pred EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeec
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
+.++.+|.+..+|.. .++.+..... .....+.. .+..++.++.+|.+..+|..++.......
T Consensus 260 y~~~~~g~l~ald~~----tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~---------- 321 (394)
T PRK11138 260 YALAYNGNLVALDLR----SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS---------- 321 (394)
T ss_pred EEEEcCCeEEEEECC----CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc----------
Confidence 777889999999987 5554433221 11112222 35577778889999999987743211100
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCee-
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR- 444 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~- 444 (491)
.. ... ...+|.. .+.+|++++.+|.|++.|..+|+.+...+.....+.
T Consensus 322 ---------------------~~-~~~-------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s 370 (394)
T PRK11138 322 ---------------------DL-LHR-------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS 370 (394)
T ss_pred ---------------------cc-CCC-------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee
Confidence 00 000 0011221 256788899999999999999999888764433332
Q ss_pred eeEecCCCCeEEEEECCCcEEEecC
Q 011216 445 DCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 445 ~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
...+ .+..|+.++.||.|+.++.
T Consensus 371 ~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 371 EPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEE--ECCEEEEEeCCceEEEEeC
Confidence 2222 2447888899999988765
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.83 E-value=1.6e-06 Score=76.40 Aligned_cols=224 Identities=18% Similarity=0.152 Sum_probs=133.4
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
+|+|..||..+|+......+..... ...+. ..+++..+++++.++.|+.||..+++.+.+... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~--------------~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~ 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG--------------GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-P 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS--------------SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-S
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC--------------Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-c
Confidence 6789999998888766554321110 12211 223466788888999999999999998877654 2
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-cccc---ccEEEEEEcCCCCEEEEeeCCCcEEEeeC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHL---EGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~---~~i~~i~~sp~~~~l~~~~~dg~i~iwd~ 345 (491)
..+..... ..+..++.++.++.+..+|.. .++.+... .... ..........++..++++..++.|..+|+
T Consensus 66 ~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 66 GPISGAPV--VDGGRVYVGTSDGSLYALDAK----TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp SCGGSGEE--EETTEEEEEETTSEEEEEETT----TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred ccccceee--ecccccccccceeeeEecccC----CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 22222112 235566777788899999987 66666653 2211 11112222223778888888999999999
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee--e---eeEEEEecCcccCCCcEEEEEecCC
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL--R---TLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~s~~~~~l~~g~~dg 420 (491)
++++. +..+...... . ........+.+. ++ .++.++.++
T Consensus 140 ~tG~~----------------------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g 183 (238)
T PF13360_consen 140 KTGKL----------------------------------LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDG 183 (238)
T ss_dssp TTTEE----------------------------------EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTS
T ss_pred CCCcE----------------------------------EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCC
Confidence 98543 2222221100 0 000001111222 34 677777777
Q ss_pred eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 421 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+.-+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+.+++.
T Consensus 184 ~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 54444999999775433 2223332 346777888888999999999988753
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.81 E-value=6.8e-06 Score=72.04 Aligned_cols=235 Identities=17% Similarity=0.146 Sum_probs=144.9
Q ss_pred EEEeEeCC-CCceEEEEecCC-eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec--
Q 011216 172 VTDTSLSP-DQRHLVYASMSP-IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-- 247 (491)
Q Consensus 172 v~~l~~sp-~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-- 247 (491)
...++.+| ....++.+-.-| ...+||..+++........... ...|| -.|++||++|++.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--------HFyGH------g~fs~dG~~LytTEnd~ 72 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--------HFYGH------GVFSPDGRLLYTTENDY 72 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--------EEecC------EEEcCCCCEEEEecccc
Confidence 44678899 556677777766 4788999999876544332211 01123 589999999988644
Q ss_pred ---CCeEEEEECC-CCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC------------------CCeEEEEeCccccCC
Q 011216 248 ---DDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD------------------DNLCKVWDRRCLNVK 305 (491)
Q Consensus 248 ---dg~i~vwd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~------------------dg~i~iwd~~~~~~~ 305 (491)
.|.|-|||.. +-+.+.++..|.-....+.+. +++..|+.+.. +..+.+.|.. +
T Consensus 73 ~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~----s 147 (305)
T PF07433_consen 73 ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR----S 147 (305)
T ss_pred CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC----C
Confidence 5789999998 566677777777667788887 67766666531 2334444544 5
Q ss_pred Ccceee--e--ccccccEEEEEEcCCCCEEEEeeCCCc-------EEEeeCCCCCCccccccCcccceeeceeecCCCCc
Q 011216 306 GKPAGV--L--MGHLEGITFIDSRGDGRYLISNGKDQA-------IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 306 ~~~~~~--~--~~~~~~i~~i~~sp~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
++.+.. + ..|.-.|..+++.++|..++..-..|. |-+++..
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g---------------------------- 199 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG---------------------------- 199 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC----------------------------
Confidence 555554 3 236678999999998876665433331 2222211
Q ss_pred ccccCCCCCeeEEEcccce-eeeeEEEEecCcccCCCcEEEEEec-CCeEEEEECCCccEEEEecCCCCCeeeeEecCCC
Q 011216 375 RDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 452 (491)
..+..+..... ...+....-++++++++.++++.+- .+.+.+||..+++.+....- ..+..++-.+++
T Consensus 200 --------~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 200 --------GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred --------CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence 11222221110 0111122334567778888876665 57899999999999877643 345677777666
Q ss_pred CeEEEEECCCcEE
Q 011216 453 PMLVSSSWDGDVV 465 (491)
Q Consensus 453 ~~l~s~~~Dg~i~ 465 (491)
+++|.+ .|.+.
T Consensus 270 -f~~ssG-~G~~~ 280 (305)
T PF07433_consen 270 -FLVSSG-QGQLI 280 (305)
T ss_pred -eEEeCC-CccEE
Confidence 555544 45543
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.77 E-value=1.4e-05 Score=80.64 Aligned_cols=218 Identities=17% Similarity=0.120 Sum_probs=136.4
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC----
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV---- 198 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~---- 198 (491)
..+.|.++.|..+++-++.+...|.|.+-|..+.. ..........|.+++||||++.++..+..+++.+-.-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~----~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE----LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc----eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccc
Confidence 35799999999999999999999999999887752 1122233447999999999999999988887766542
Q ss_pred CCCccc--------cccceeccccccccccC----------------CCCCceecEEEEEEcCCCCEEEEEe-----cCC
Q 011216 199 GSGTME--------SLANVTEIHDGLDFSAA----------------DDGGYSFGIFSLKFSTDGRELVAGS-----SDD 249 (491)
Q Consensus 199 ~~~~~~--------~~~~~~~~~~~~~~~~~----------------~~~~h~~~v~~i~~s~~~~~l~~~~-----~dg 249 (491)
-..+.. ...++.-.....+|... ......+.=++|.|--||+++++.. ...
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111111 00000000000011100 0000111234589999999998832 237
Q ss_pred eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe---CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC
Q 011216 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp 326 (491)
.|+|||.+ +..-..-....+.-.+++|- |.|.++++-. .|+.|.++...... .+.....+......+..++|+.
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccchheeeecC
Confidence 89999987 44322222333445689997 6788887754 45679999864222 2222222333334489999999
Q ss_pred CCCEEEE---eeCCCcEEEeeCCC
Q 011216 327 DGRYLIS---NGKDQAIKLWDIRK 347 (491)
Q Consensus 327 ~~~~l~~---~~~dg~i~iwd~~~ 347 (491)
++..|++ ......|++|-+.+
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCceeeeecccccceEEEEEecC
Confidence 9999987 44555599998776
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.74 E-value=2.8e-05 Score=70.46 Aligned_cols=198 Identities=19% Similarity=0.143 Sum_probs=100.9
Q ss_pred EEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccc
Q 011216 129 VSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (491)
.-+|.+||+.|+.++. ...+.+.|+.+++..+.. ...+ .......++|+++.++.......|.-.|+++.+...
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 3478899987776665 446778888888444322 1111 122245678999988877777789999999987766
Q ss_pred ccceeccccccccccCCCCCceecEEEEEE--cCCCCEEEEEe----------------------cCCeEEEEECCCCee
Q 011216 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS----------------------SDDCIYVYDLEANKL 261 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~--s~~~~~l~~~~----------------------~dg~i~vwd~~~~~~ 261 (491)
+...++.. +-...| +.|+..++-.- -...|.-.|+.+++.
T Consensus 117 vy~~p~~~----------------~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 117 VYEVPDDW----------------KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEE--TTE----------------EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEECCccc----------------ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Confidence 65554422 212333 33555443321 123466778888776
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEeC---CC-eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee--
Q 011216 262 SLRILAHTSDVNTVCFGDESGHLIYSGSD---DN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-- 335 (491)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---dg-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~-- 335 (491)
...+ .-...+..+.|+|.+..+|+-|-+ +. .-+||-++.......++.... ....+..=-|.|||..|.--+
T Consensus 181 ~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~ 258 (386)
T PF14583_consen 181 KVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYT 258 (386)
T ss_dssp EEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEE
T ss_pred eEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeec
Confidence 4444 456788999999988888888754 22 247787763322222222211 123444556899998776432
Q ss_pred ---CCCcEEEeeCCC
Q 011216 336 ---KDQAIKLWDIRK 347 (491)
Q Consensus 336 ---~dg~i~iwd~~~ 347 (491)
.+..|.-+|+.+
T Consensus 259 ~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 259 PGGQDFWIAGYDPDT 273 (386)
T ss_dssp TTT--EEEEEE-TTT
T ss_pred CCCCceEEEeeCCCC
Confidence 233456666665
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.72 E-value=3e-06 Score=85.26 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=138.1
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
..|.++.|..+...++.+...|.|.+-|.++........+. ..|.+++|+||++.++..+..+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd-----------------~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD-----------------NGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc-----------------CceEEEeecCCCcEEEEEeCCc
Confidence 47999999999999999999999999988877654443322 2799999999999999998888
Q ss_pred eEEEEECCCCeeeEEEe-----ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEE
Q 011216 250 CIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~ 324 (491)
++.+.+- +-.++.... ...+..-.+-|- ...+.| -|+ .|.....+.. ...+...... ..+.=++|.|
T Consensus 132 tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwG-rkeTqf-rgs-~gr~~~~~~~---~~ek~~~~~~-~~~~~~~IsW 203 (1265)
T KOG1920|consen 132 TLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWG-RKETQF-RGS-EGRQAARQKI---EKEKALEQIE-QDDHKTSISW 203 (1265)
T ss_pred EEEEEec-cccchhccccccccccccccceeccc-ccceee-ecc-hhhhcccccc---cccccccchh-hccCCceEEE
Confidence 7776542 222211111 111223334442 111111 111 1122111111 0001111111 1222357899
Q ss_pred cCCCCEEEEee-----CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEE
Q 011216 325 RGDGRYLISNG-----KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 325 sp~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
..||+++++.. ....|++||-.. ...... .+...
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns~s----------------------------------------e~~~~ 242 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDREG-ALNSTS----------------------------------------EPVEG 242 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEecccc-hhhccc----------------------------------------Ccccc
Confidence 99999998832 237899999762 111000 01111
Q ss_pred EEecCcccCCCcEEEEEec---CCeEEEEECCC---ccEEEEecCCCCCeeeeEecCCCCeEEE---EECCCcEEEecCC
Q 011216 400 CHFSPVYSTGQKYIYTGSH---DSCVYVYDLVS---GEQVAALKYHTSPVRDCSWHPSQPMLVS---SSWDGDVVRWEFP 470 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~g~~---dg~i~iwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~~~Dg~i~iw~~~ 470 (491)
...+.+|-|.|.++++-.. |+.|.+|.-+. |+....+.....+|..++|+.++..||+ ......|++|-+.
T Consensus 243 l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 243 LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred cccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 1223356667888887543 56799998532 2222223333455999999999999887 4445559999876
Q ss_pred CC
Q 011216 471 GN 472 (491)
Q Consensus 471 ~~ 472 (491)
+-
T Consensus 323 Ny 324 (1265)
T KOG1920|consen 323 NY 324 (1265)
T ss_pred Ce
Confidence 53
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=4.3e-07 Score=88.25 Aligned_cols=185 Identities=14% Similarity=0.196 Sum_probs=129.4
Q ss_pred CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
++..++.|+....+..+|+.+.+..+...+... .|+-++ .+++.+.+|...|+|.+-|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~----------------~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~ 207 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS----------------GVTIMR--YNNRNLFCGDTRGTVFLRDPNSF 207 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCC----------------ceEEEE--ecCcEEEeecccceEEeecCCcC
Confidence 345567777777788888887776555443221 344444 35789999999999999999999
Q ss_pred eeeEEEeccCCCeEEEEEecCCCCEEEEEeC---------CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC-CC
Q 011216 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GR 329 (491)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~-~~ 329 (491)
+.+.++..|++.|..+... |++|++++. |..|+|||+| .-+.+..+.-+.++ ..+.|+|. ..
T Consensus 208 ~~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLR----mmral~PI~~~~~P-~flrf~Psl~t 279 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLR----MMRALSPIQFPYGP-QFLRFHPSLTT 279 (1118)
T ss_pred ceeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhhhhhh----hhhccCCcccccCc-hhhhhcccccc
Confidence 9999999999999998874 788888874 5678999998 44444444444333 56778885 45
Q ss_pred EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC
Q 011216 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
.+++++..|...+-|..+...+. ...+.-+.....+ ....+|++
T Consensus 280 ~~~V~S~sGq~q~vd~~~lsNP~--------------------------------~~~~~v~p~~s~i----~~fDiSsn 323 (1118)
T KOG1275|consen 280 RLAVTSQSGQFQFVDTATLSNPP--------------------------------AGVKMVNPNGSGI----SAFDISSN 323 (1118)
T ss_pred eEEEEecccceeeccccccCCCc--------------------------------cceeEEccCCCcc----eeEEecCC
Confidence 68888899999999855433211 1111111111111 22356779
Q ss_pred CcEEEEEecCCeEEEEE
Q 011216 410 QKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 410 ~~~l~~g~~dg~i~iwd 426 (491)
+..+|.|..+|.|.+|.
T Consensus 324 ~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 324 GDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CceEEEecccCcEeeec
Confidence 99999999999999997
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7e-07 Score=79.95 Aligned_cols=259 Identities=15% Similarity=0.041 Sum_probs=163.8
Q ss_pred CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
|+..|+.+. ....+++.+++.||.++.|.-..-.......... .|...|.+++.+-++..+.+.+.
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-------------aHL~~I~sl~~S~dg~L~~Sv~d 73 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-------------AHLGVILSLAVSYDGWLFRSVED 73 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhH-------------HHHHHHHhhhccccceeEeeccC
Confidence 444455443 3457889999999999999755422222222221 35557888999999998888777
Q ss_pred -CCeEEEEECCCCeeeEEEe--ccCCCeEEEEEecCCC--CEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 248 -DDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 248 -dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
|..++++|+++-..+.-+. .-.+.+.++ .++.+. .+-++.-.++.+.++|-+.. .......-.-|..+|..+
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d--~~q~~~fkklH~sPV~~i 150 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGD--FCQDGYFKKLHFSPVKKI 150 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCC--cCccceecccccCceEEE
Confidence 9999999998765442221 222222222 221211 22233346789999997622 123333445689999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCC-CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE---
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI--- 398 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 398 (491)
.+.+-+..+++....|.|.-|.... .+.+. ......++.........
T Consensus 151 ~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr-----------------------------~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 151 RYNQAGDSAVSIDISGMVEYWSAEGPFQFPR-----------------------------TNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred EeeccccceeeccccceeEeecCCCcccCcc-----------------------------ccccccccccchhhcccccc
Confidence 9999999999999999999998873 11100 00111111111111111
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC--------------------------------CC-CCeee
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--------------------------------HT-SPVRD 445 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--------------------------------h~-~~v~~ 445 (491)
....+..|+|++..+.+-+.|..|++++.++|+.+..+.. |. ..-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 1112336788999999999999999999999876554321 11 23456
Q ss_pred eEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 446 CSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 446 ~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+.|...+++|+-++-=| |++.++.++.
T Consensus 282 ~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred eEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 78888999999887666 8888887764
No 316
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.68 E-value=5.2e-05 Score=63.53 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=90.7
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (491)
..+++.|+..+.+.--|..+|...-+.... ..|.+-+.- -|++++.|.+.|.+.+.+.++|.....+...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg----~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG----VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC----ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 357778888888888898888555443222 133333322 4777999999999999999999765444433211
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEE
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 295 (491)
.+ .....+++..+..|+.|++.+..|..+..++...+...+...+-+..+.++. |+.+...|.+.
T Consensus 96 -------------k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G~vl 160 (354)
T KOG4649|consen 96 -------------KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAGAVL 160 (354)
T ss_pred -------------cc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccceEE
Confidence 11 2344568899999999999999999998888776543333334445433343 44444455444
Q ss_pred EE
Q 011216 296 VW 297 (491)
Q Consensus 296 iw 297 (491)
--
T Consensus 161 av 162 (354)
T KOG4649|consen 161 AV 162 (354)
T ss_pred EE
Confidence 33
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=1.8e-08 Score=97.13 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=140.8
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~ 244 (491)
.+.+....+|++|+-+.+.|++|+..|.|+++++.+|......+ +|..+|+-+.-+.||..+++
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------------cH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------------CHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc----------------ccccccccccccCCcceeee
Confidence 34556678999999999999999999999999999998755443 58889999999999998777
Q ss_pred EecCC--eEEEEECCC-CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-c---cccc
Q 011216 245 GSSDD--CIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M---GHLE 317 (491)
Q Consensus 245 ~~~dg--~i~vwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~---~~~~ 317 (491)
.+.-. -..+|++.+ +.....+. .-.++.|+ .....-+.|.......+||+. ++.++.++ . +...
T Consensus 1161 sss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFs-n~~q~r~~gt~~d~a~~YDvq----T~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFS-NSLQFRALGTEADDALLYDVQ----TCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred eccccCchHHHhccccccCcccccc----ccceeehh-hhHHHHHhcccccceEEEecc----cCcHHHHhcCcchhhhh
Confidence 65543 477899864 23333332 34678887 433444455555678999997 55544442 1 1122
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeee
Q 011216 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.-.+..|+|+..+++ .|| .+||++..+. +..|..-.
T Consensus 1232 ~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a----------------------------------Ih~FD~ft----- 1267 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL---NDG--VLWDVRIPEA----------------------------------IHRFDQFT----- 1267 (1516)
T ss_pred hccccccCCCcceEe---eCc--eeeeeccHHH----------------------------------Hhhhhhhe-----
Confidence 236778999988776 455 6899997422 22222111
Q ss_pred EEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeE
Q 011216 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 455 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 455 (491)
....-.|.|+|.-++.-+ .|||+++.+.+.....- .-..+.|+..|..+
T Consensus 1268 --~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L--dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1268 --DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQCAVTFNSTGDVM 1316 (1516)
T ss_pred --ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc--cceEEEeccCccch
Confidence 111225777888888765 48999988776655322 12445666665543
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.67 E-value=9.7e-06 Score=71.11 Aligned_cols=198 Identities=21% Similarity=0.241 Sum_probs=123.4
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 188 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~- 188 (491)
...+.+-+| -.||+||++|.+.- ..|.|-|||...+ +.+.-....+.-....+.+.|||+.|+++-
T Consensus 47 ~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANG 118 (305)
T PF07433_consen 47 PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANG 118 (305)
T ss_pred CCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence 334555556 58999999999864 3589999999944 334344445544567889999998888763
Q ss_pred -----------------cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC--
Q 011216 189 -----------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-- 249 (491)
Q Consensus 189 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg-- 249 (491)
.+..+...|..+|+.+....++.. -|...|..+++.++|..++..-..|
T Consensus 119 GI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~------------~~~lSiRHLa~~~~G~V~~a~Q~qg~~ 186 (305)
T PF07433_consen 119 GIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD------------LHQLSIRHLAVDGDGTVAFAMQYQGDP 186 (305)
T ss_pred CCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc------------ccccceeeEEecCCCcEEEEEecCCCC
Confidence 123455566666666555443321 2555899999999997555543333
Q ss_pred -----eEEEEECCCCeeeEE-----EeccCCCeEEEEEecCCCCEE-EEEeCCCeEEEEeCccccCCCcceeeecccccc
Q 011216 250 -----CIYVYDLEANKLSLR-----ILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 250 -----~i~vwd~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
.|.+++....-.... ...-...+-+|+++ .++.++ +|+=..+.+.+||.. ++..+.... ...
T Consensus 187 ~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~----tg~~~~~~~--l~D 259 (305)
T PF07433_consen 187 GDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAA----TGRLLGSVP--LPD 259 (305)
T ss_pred CccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECC----CCCEeeccc--cCc
Confidence 244444333211111 11345789999998 666665 455567889999987 666555443 345
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEE
Q 011216 319 ITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 319 i~~i~~sp~~~~l~~~~~dg~i~ 341 (491)
+..++..+++ ++++.+ .|.+.
T Consensus 260 ~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 260 ACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred eeeeeecCCc-eEEeCC-CccEE
Confidence 6677777766 555444 44433
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5e-06 Score=73.59 Aligned_cols=238 Identities=19% Similarity=0.197 Sum_probs=133.8
Q ss_pred CceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc
Q 011216 225 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 225 ~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 303 (491)
+|...|.+++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+.+++|.-.+.++|+.|...|.|.+||++...
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4556899999999776 7888999999999999999998888777 8899999986778899999999999999998332
Q ss_pred CCCcceeeecc--ccccEEEEEEc------CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcc--cceee--------c
Q 011216 304 VKGKPAGVLMG--HLEGITFIDSR------GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR--SYEWD--------Y 365 (491)
Q Consensus 304 ~~~~~~~~~~~--~~~~i~~i~~s------p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~--------~ 365 (491)
.++..+.+ ...+|..++.- +-|.+|+....+ +..|++.............. ....+ -
T Consensus 270 ---~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 270 ---GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred ---chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 22333322 22344444432 234444444433 56676654322222111100 00000 0
Q ss_pred eeecCCCC-----ccccc----CCCCCeeEEEc-ccceeeeeEEEEecCc--ccCCCcEEE-EEecCCeEEEEECCCccE
Q 011216 366 RWMDYPPQ-----ARDLK----HPCDQSVATYK-GHSVLRTLIRCHFSPV--YSTGQKYIY-TGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 366 ~~~~~~~~-----~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~s~~~~~l~-~g~~dg~i~iwd~~~~~~ 432 (491)
..+.+.++ .+.+. ...+.++...+ ++. .....+....++ -.++.++|+ +|...+.+.+||..+++.
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 01111110 00000 00011111100 000 000000000011 123445554 445567899999999999
Q ss_pred EEEecCCCCCeeeeEecCC-C-CeEEEEECCCcEEEecCCC
Q 011216 433 VAALKYHTSPVRDCSWHPS-Q-PMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~s~~-~-~~l~s~~~Dg~i~iw~~~~ 471 (491)
+.++.. ..+|.+++.... + .+|++-. |..++|+..+.
T Consensus 424 vQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 424 VQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 998873 478888876543 3 3666654 56788887543
No 320
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.63 E-value=2.7e-05 Score=69.21 Aligned_cols=278 Identities=18% Similarity=0.158 Sum_probs=155.8
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe----------cCCeEEEEECCCCccccccceeccccc
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (491)
+.+.|+|.++++.+-...... .-.+..+|+++.+++++ ..-.|.+||..+-.......++..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 479999999886554433222 23366899999888753 233699999998776655554432111
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCe
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 293 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~ 293 (491)
+.. .....++++.|++++++... ...|.|.|+..++.+..+.-. + +...| |..++-|.+-+.||.
T Consensus 92 ~~~---------~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G--C~~iy-P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 92 QVV---------PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G--CWLIY-PSGNRGFSMLCGDGS 158 (342)
T ss_dssp -BS-----------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S--EEEEE-EEETTEEEEEETTSC
T ss_pred eec---------ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C--EEEEE-ecCCCceEEEecCCc
Confidence 100 02234688999998887643 467999999999988776432 1 22223 444567888899999
Q ss_pred EEEEeCccccCCCcceee----eccccccE-EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceee
Q 011216 294 CKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~----~~~~~~~i-~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
+.-..+.. .++.... +....+++ ..-++...+..++--+.+|.|+--|+......... .|..
T Consensus 159 l~~v~Ld~---~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-------~~~~--- 225 (342)
T PF06433_consen 159 LLTVTLDA---DGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-------PWSL--- 225 (342)
T ss_dssp EEEEEETS---TSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-------EEES---
T ss_pred eEEEEECC---CCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-------cccc---
Confidence 98888762 2333221 11112222 12234444445555678888888888763311100 0000
Q ss_pred cCCCCcc-cccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec--------CC--eEEEEECCCccEEEEec
Q 011216 369 DYPPQAR-DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------DS--CVYVYDLVSGEQVAALK 437 (491)
Q Consensus 369 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------dg--~i~iwd~~~~~~~~~~~ 437 (491)
...... .-..|.+-.+ .++++..+.|++--. |+ .|.++|+.+++.+.++.
T Consensus 226 -~t~~e~~~~WrPGG~Q~------------------~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~ 286 (342)
T PF06433_consen 226 -LTDAEKADGWRPGGWQL------------------IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP 286 (342)
T ss_dssp -S-HHHHHTTEEE-SSS-------------------EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE
T ss_pred -cCccccccCcCCcceee------------------eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe
Confidence 000000 0000000000 122222333332211 11 48888999999999887
Q ss_pred CCCCCeeeeEecCCCC-eEEEEE-CCCcEEEecCCCCCC
Q 011216 438 YHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGE 474 (491)
Q Consensus 438 ~h~~~v~~~~~s~~~~-~l~s~~-~Dg~i~iw~~~~~~~ 474 (491)
. ..++.+|+.+.+.+ +|++.+ .++.+.+||..+++.
T Consensus 287 l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 287 L-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp E-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred C-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3 34688999998877 666554 589999999998754
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=3e-07 Score=54.73 Aligned_cols=39 Identities=31% Similarity=0.631 Sum_probs=35.8
Q ss_pred CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEe
Q 011216 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd 298 (491)
++++..+.+|...|++++|+ +++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 35678899999999999998 7799999999999999997
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=3.3e-05 Score=75.24 Aligned_cols=206 Identities=12% Similarity=0.079 Sum_probs=125.1
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCcee-EEEeEeCCCCceEEEEecCC-----eEEEEECCCCcc
Q 011216 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 203 (491)
Q Consensus 130 ~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~~~~~dg-----~i~iwd~~~~~~ 203 (491)
-+|++.+..+|.|+.+|.|.+.+-.- ... .....+... |..+-...+..+|++.+.|+ .++||+++.-+.
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~--~~~--~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF--QLI--RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc--eee--ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 45788889999999999887776432 221 122233333 44444444446888877664 599999875432
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC--CCeeeEE--EeccCCCeEEEEEec
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANKLSLR--ILAHTSDVNTVCFGD 279 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~--~~~~~~~--~~~~~~~v~~i~~~~ 279 (491)
.........+.- ..........++.+++.+.+-+.+|+|-.+|.|..+.-+ ..+-.+. ......+|+.+.+.
T Consensus 105 n~sP~c~~~~ri---~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~- 180 (933)
T KOG2114|consen 105 NNSPQCLYEHRI---FTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR- 180 (933)
T ss_pred CCCcceeeeeee---eccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-
Confidence 111111100000 000111133478999999999999999999999998432 1111122 22345799999997
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.++..++-+.....|.+|.+.. .......+..|...+.|..+++....+++++. ..+.+|+...
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~g---r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLSG---RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDG 244 (933)
T ss_pred cCCceeEEEEecceeEEEEecC---CCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCC
Confidence 5555523333445789999861 12234456777788999999876654665554 4599999875
No 323
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=6.7e-06 Score=79.27 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=96.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-----CceEEEEecCCeEEEEECCC-Cccccccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGS-GTMESLAN 208 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----~~~l~~~~~dg~i~iwd~~~-~~~~~~~~ 208 (491)
+|.++++|+.||+|.|-.+.++....... ...++.+++++|+ .+.+++|+..| +.++.-.= +.....
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-- 154 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-- 154 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--
Confidence 59999999999999999998875444332 2237999999998 47899999888 66664221 010000
Q ss_pred eeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCC------eEEEEEecCCC
Q 011216 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD------VNTVCFGDESG 282 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------v~~i~~~~~~~ 282 (491)
... .-.++|.++.|. |+++|-++.+| |+|||+.+++.+..+...... ...+.|. +.
T Consensus 155 ~l~-------------~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~~ 216 (846)
T KOG2066|consen 155 VLS-------------EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--DE 216 (846)
T ss_pred eee-------------cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--CC
Confidence 011 123489999997 77899998888 999999998887766533332 3457775 34
Q ss_pred CEEEEEeCCCeEEEEeCc
Q 011216 283 HLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 283 ~~l~s~s~dg~i~iwd~~ 300 (491)
..|+.|-. -+|+|..++
T Consensus 217 ~~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 217 DRLVIGWG-DSVKICSIK 233 (846)
T ss_pred CeEEEecC-CeEEEEEEe
Confidence 45656544 478888876
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.56 E-value=7.2e-05 Score=72.08 Aligned_cols=286 Identities=17% Similarity=0.198 Sum_probs=148.4
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeeccCCce----------eEE-----------------EeEe---CCCCceEEEEe
Q 011216 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRW----------TVT-----------------DTSL---SPDQRHLVYAS 188 (491)
Q Consensus 139 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~----------~v~-----------------~l~~---sp~~~~l~~~~ 188 (491)
+.+|+..|.|+|+-+.+...+..+.......+ .|. .+.+ ..||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 66788889999998888755554332211100 010 1111 12678888766
Q ss_pred c-CCeEEEEECCCCccccccceeccc--cccccccCCCCCceecEE-----EEEEcCCCCEEEEEe-cCCeEEEEECCCC
Q 011216 189 M-SPIVHIVDVGSGTMESLANVTEIH--DGLDFSAADDGGYSFGIF-----SLKFSTDGRELVAGS-SDDCIYVYDLEAN 259 (491)
Q Consensus 189 ~-dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~-----~i~~s~~~~~l~~~~-~dg~i~vwd~~~~ 259 (491)
. +..|...+++..++..+..++... .++.+... .++..|. .+=+.|||+.+...+ ..+.+.+.|.++.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~---p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm 225 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKI---PRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM 225 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCcccc---CCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc
Confidence 4 445666666655554444433322 12222210 1111222 234566777554332 3567888888887
Q ss_pred eeeEEEeccCCCeEEEEEecCCCCEEEEEe----------------------------------------CCCeEEEEeC
Q 011216 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGS----------------------------------------DDNLCKVWDR 299 (491)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s----------------------------------------~dg~i~iwd~ 299 (491)
+...++.-- +....+.++ +++.++++.+ .++.|.+.|.
T Consensus 226 eV~~qV~Vd-gnpd~v~~s-pdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~ 303 (635)
T PRK02888 226 EVAWQVMVD-GNLDNVDTD-YDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG 303 (635)
T ss_pred eEEEEEEeC-CCcccceEC-CCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence 766555422 233455665 4555555553 1244666665
Q ss_pred ccccCCCcceeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccccc
Q 011216 300 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
+.....+..+.....-......+.++|||+++++++ .+.++.|.|+.+.........
T Consensus 304 ~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~---------------------- 361 (635)
T PRK02888 304 RKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI---------------------- 361 (635)
T ss_pred CccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----------------------
Confidence 510000112222222334567899999999987665 488999999988543211100
Q ss_pred CCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC----------ccEEEEecCCCCCee----
Q 011216 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS----------GEQVAALKYHTSPVR---- 444 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~---- 444 (491)
.+.+..+....-.. .....+|+++|+...+-..|..|..||+.. ...+..+.-|-.+-.
T Consensus 362 ~~~~~vvaevevGl-------GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~ 434 (635)
T PRK02888 362 KPRDAVVAEPELGL-------GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHAS 434 (635)
T ss_pred CccceEEEeeccCC-------CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeec
Confidence 00011111111100 011225677888777778899999999876 234444543332211
Q ss_pred -eeEecCCCCeEEEE
Q 011216 445 -DCSWHPSQPMLVSS 458 (491)
Q Consensus 445 -~~~~s~~~~~l~s~ 458 (491)
.=.-.|||++|++.
T Consensus 435 ~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 435 MGETKEADGKWLVSL 449 (635)
T ss_pred CCCcCCCCCCEEEEc
Confidence 11235677777665
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.55 E-value=6e-05 Score=65.28 Aligned_cols=212 Identities=15% Similarity=0.166 Sum_probs=117.8
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
.+.+.+....+..++|.|+.+ ++++....+.|..++.+ |+.+... ...+. +..-.|++..++.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-PLDGF-GDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-E-SS--SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-eCCCC-CCceeEEEECCCEEEEEEcCCCcEEE
Confidence 345566677899999999865 55566667888888874 5555543 33332 35788899888887776666899999
Q ss_pred EECCCCcc-ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC---CeeeEEE------
Q 011216 196 VDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRI------ 265 (491)
Q Consensus 196 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~------ 265 (491)
+++..... .......... +.+ ...+...+..++|.+.++.|+++-...-..+|.+.. ...+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~--l~~----~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKIS--LGF----PNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEE----TT--EEEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEeccccccchhhceEEe--ccc----ccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 99854321 1111111111 001 112334688999999888888887776666666643 1111111
Q ss_pred --eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc---------ccEEEEEEcCCCCEEEEe
Q 011216 266 --LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSRGDGRYLISN 334 (491)
Q Consensus 266 --~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------~~i~~i~~sp~~~~l~~~ 334 (491)
......+.+++++|..+++++....+..|..+|. .++.+..+.-.. ...-.|+|.++|++.+++
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-----~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-----QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-----T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEECC-----CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1234568899999888999999999999999995 566554433211 346789999999766554
Q ss_pred eCCCcEEEe
Q 011216 335 GKDQAIKLW 343 (491)
Q Consensus 335 ~~dg~i~iw 343 (491)
.-+..++|
T Consensus 240 -EpNlfy~f 247 (248)
T PF06977_consen 240 -EPNLFYRF 247 (248)
T ss_dssp -TTTEEEEE
T ss_pred -CCceEEEe
Confidence 44444443
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=1.9e-06 Score=80.52 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
...+.|.|++++|+...|+.|+.||.|.+||...+. .... ...-.++.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 568899999999999999999999999999998762 2221 22236889999999999999999999999998755
Q ss_pred cc
Q 011216 202 TM 203 (491)
Q Consensus 202 ~~ 203 (491)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 43
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=8.6e-05 Score=69.82 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=78.0
Q ss_pred EEEEEEcC-CCCEEEEE----ecCCe----EEEEECCCCeeeE---EEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEE
Q 011216 230 IFSLKFST-DGRELVAG----SSDDC----IYVYDLEANKLSL---RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297 (491)
Q Consensus 230 v~~i~~s~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~---~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw 297 (491)
..++.|+. +...+.+. +.+|. -.+|++..++..+ +-......|.|++++ ++...++.|..||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~s-p~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARS-PSEDKLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecC-cccceEEEEecCCeEEEE
Confidence 45666665 33344432 22332 4456665554321 112577889999998 788899999999999999
Q ss_pred eCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 298 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 298 d~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
|.. .+ +.......-..+.++|+|+|.++++|+..|.+.+||+.-.
T Consensus 287 D~~----~~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 287 DTT----RG--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EcC----CC--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 975 22 2223334455788999999999999999999999998763
No 328
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.52 E-value=0.00034 Score=62.37 Aligned_cols=246 Identities=16% Similarity=0.144 Sum_probs=135.4
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeeccCCce----eEEEeEeCCCCceEEEEec--CCe
Q 011216 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASM--SPI 192 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~~~----~v~~l~~sp~~~~l~~~~~--dg~ 192 (491)
.+..||||+.+.+++ ..-.|.+||..+-...........++. ....++++.|++++++... ...
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999888754 344799999999876666655544222 1234678899998888644 357
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC-CCeeeEEEe----c
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL----A 267 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~----~ 267 (491)
|.|.|+..++.......+. +..+--+. .+.+.+-+.||.+.-..+. .|+...+.. .
T Consensus 120 VtVVDl~~~kvv~ei~~PG------------------C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~ 180 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG------------------CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP 180 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS------------------EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESST
T ss_pred EEEEECCCCceeeeecCCC------------------EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCC
Confidence 9999999888765444332 22222222 2457888889999999887 455432221 1
Q ss_pred cCCCe-EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc----------ccccEEEEEEcCCCCEEEEeeC
Q 011216 268 HTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 268 ~~~~v-~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
...++ ..-++. ..+..++-.+.+|.|+--|+..... +....+.. ..+.-.-+++++..+.|.+.-.
T Consensus 181 ~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 181 DDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSA--KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp TTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSE--EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred CCcccccccceE-CCCCeEEEEecCCEEEEEeccCCcc--cccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 12222 233443 3445566678899999988852211 11111110 0122334566655544443211
Q ss_pred --------CC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 337 --------DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 337 --------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
|+ .|-++|+.+ .+.+..+..... ..++..
T Consensus 258 ~g~~gsHKdpgteVWv~D~~t----------------------------------~krv~Ri~l~~~-------~~Si~V 296 (342)
T PF06433_consen 258 QGGEGSHKDPGTEVWVYDLKT----------------------------------HKRVARIPLEHP-------IDSIAV 296 (342)
T ss_dssp E--TT-TTS-EEEEEEEETTT----------------------------------TEEEEEEEEEEE-------ESEEEE
T ss_pred CCCCCCccCCceEEEEEECCC----------------------------------CeEEEEEeCCCc-------cceEEE
Confidence 11 355555555 344444443221 112233
Q ss_pred cCCCc-EEEEE-ecCCeEEEEECCCccEEEEec
Q 011216 407 STGQK-YIYTG-SHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 407 s~~~~-~l~~g-~~dg~i~iwd~~~~~~~~~~~ 437 (491)
+.+.+ +|++. ..++.+.+||..+|+.+..+.
T Consensus 297 sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 297 SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 33443 55544 457999999999999998887
No 329
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.49 E-value=0.0001 Score=68.89 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=62.2
Q ss_pred cCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 133 SADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 133 s~dg~~l~~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
|||+++++... ..+.+.|||+.++..... ... ...+....|||+|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l-~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL-TPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES-S-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC-cCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 78999888743 246799999999733222 111 33678899999999999886 67899999887755
Q ss_pred ccccceecc--ccccc-cccCCCCCceecEEEEEEcCCCCEEEEEe
Q 011216 204 ESLANVTEI--HDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 204 ~~~~~~~~~--~~~~~-~~~~~~~~h~~~v~~i~~s~~~~~l~~~~ 246 (491)
..+..-... ..|.. +....+ --..-..+-||||+++|+...
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEE--v~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEE--VFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp EESES--TTTEEESB--HHHHHH--TSSSSBSEEE-TTSSEEEEEE
T ss_pred EEeccccceeEEcCccceecccc--ccccccceEECCCCCEEEEEE
Confidence 443332200 00000 000000 000124588999999888754
No 330
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=7.1e-06 Score=79.46 Aligned_cols=186 Identities=13% Similarity=0.203 Sum_probs=114.0
Q ss_pred EEEEcCCCCEEEEEE----CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc
Q 011216 129 VSQFSADGSLFVAGF----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (491)
-..|+|...++|+++ ..|.|.||- ++|++ +......- .+++++|+|..-.|+.|-.-|.+.+|...+.+..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEP-qr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEP-QRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCC-Ccccccce---ehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence 357888888888776 468888885 45532 22222222 4678999999988999988999999998765542
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE--Eecc--CCCeEEEEE--e
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAH--TSDVNTVCF--G 278 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~--~~~v~~i~~--~ 278 (491)
.... .|+.+|..+.||++|..++++..-|.|.+|.......+.. +..| ...++-++| +
T Consensus 95 tv~~----------------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~ 158 (1416)
T KOG3617|consen 95 TVVE----------------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLS 158 (1416)
T ss_pred eecc----------------CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecC
Confidence 2211 3777999999999999999999999999998764322221 1122 223333333 3
Q ss_pred cCCCC-----EEEEEeCCCeEE-EEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 279 DESGH-----LIYSGSDDNLCK-VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~-----~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
++... ..++.+++..+- .++.+ ........ .|. =.|+|..++.++.+|+|+-.|-..
T Consensus 159 ~~~Ee~~~laKaaVtgDe~alD~~fnwk----~~~a~rs~-~ks-------gv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 159 YDREEKFKLAKAAVTGDESALDEPFNWK----ESLAERSD-EKS-------GVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred CChHHhhhhhhhhccCchhhhcccccCc----cchhhccc-ccc-------CCCCCcEEEEEcCCceEEEEcCCC
Confidence 22111 122333333332 33332 11111111 111 246777788888888888888654
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.3e-05 Score=68.62 Aligned_cols=154 Identities=14% Similarity=0.087 Sum_probs=95.2
Q ss_pred ccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC-ceEEEEecCCeEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHI 195 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~i 195 (491)
+.+..|...|..++|||..+ ++..++.+..|+|.|+.+...+...... ..+.+++|.-|. ++|..|..+|.|.|
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----CCceeeeeccCCcceeEEeccCceEEE
Confidence 45677889999999999887 7888999999999999987554443322 379999998876 56666778899999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEE------EcCCCCEEEEEecCCeEEEEECCC--CeeeEEEe-
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK------FSTDGRELVAGSSDDCIYVYDLEA--NKLSLRIL- 266 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~------~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~- 266 (491)
||+...+-.......+.. ..+|..++ ..+.|..|+..+.+ +..|.+.. +.....+.
T Consensus 263 yD~R~~~~~~~e~~a~~t-------------~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlel 327 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVT-------------INPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLEL 327 (463)
T ss_pred EEccCCCchHhhhhhhhc-------------cCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccccc
Confidence 999765432111111000 01333333 23345555555443 55665532 22222222
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeC
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~ 290 (491)
+..+...++.+.+..++.|++.-.
T Consensus 328 e~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 328 EPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred CCCcceeeeeecCccceEEEEecC
Confidence 345666777776555556665543
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=0.00032 Score=58.93 Aligned_cols=143 Identities=19% Similarity=0.048 Sum_probs=93.2
Q ss_pred CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe
Q 011216 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
..+++.|+..+.+.-.|..+|+......+.. .+.+-+.- -|++++.|...|.+++.+..+|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence 4567778888899999999888754433222 22222211 46789999999999999999998
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcE
Q 011216 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i 340 (491)
....+.. .+.|.+-+-.++++.+++.|+.|++.+..|.+ ....+...+-......+-+..|-...|..+...|.+
T Consensus 85 ~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~----~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 85 QIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPK----TYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred heeeeee-hhhhccceEEcCCCceEEEecCCCcEEEeccc----ccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 7666643 23444444445789999999999999999997 666666554333333344455533334444555555
Q ss_pred EEeeCC
Q 011216 341 KLWDIR 346 (491)
Q Consensus 341 ~iwd~~ 346 (491)
.--...
T Consensus 160 lavt~~ 165 (354)
T KOG4649|consen 160 LAVTKN 165 (354)
T ss_pred EEEccC
Confidence 444433
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.40 E-value=8.6e-05 Score=70.14 Aligned_cols=184 Identities=24% Similarity=0.284 Sum_probs=110.3
Q ss_pred cEEEEEEcCCCCEEEEEe---cC-CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeE--EEEeCccc
Q 011216 229 GIFSLKFSTDGRELVAGS---SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC--KVWDRRCL 302 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i--~iwd~~~~ 302 (491)
.+..-+|+|+++.++... .. ..++++|+.+++....+. ..+.-....|+|....++++...||.. .+.|+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~-- 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD-- 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC--
Confidence 566678999988765542 23 469999999887655443 334445678885555556666677764 555664
Q ss_pred cCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-CCc--EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccC
Q 011216 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
++....+..-.+.-+.-.|+|||+.|+-.+. .|. |.++|......
T Consensus 271 ---~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----------------------------- 318 (425)
T COG0823 271 ---GKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----------------------------- 318 (425)
T ss_pred ---CCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------------------------
Confidence 2223334433333446779999999886544 444 55555554211
Q ss_pred CCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-Ce--EEEEECCCccEEEEecCCCCCeeeeEecCCCCeEE
Q 011216 380 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SC--VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~--i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 456 (491)
...++.+.. ...|.+||||++|+..+.. |. |.+.|+.++..+..+. +......-+|.|++..++
T Consensus 319 ----~riT~~~~~--------~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 319 ----TRLTFSGGG--------NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred ----eEeeccCCC--------CcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 111111111 1267899999999887753 43 7777777666444443 334445667888888666
Q ss_pred EEEC
Q 011216 457 SSSW 460 (491)
Q Consensus 457 s~~~ 460 (491)
..+.
T Consensus 386 ~~s~ 389 (425)
T COG0823 386 FSSG 389 (425)
T ss_pred Eecc
Confidence 5443
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=3.2e-05 Score=74.76 Aligned_cols=146 Identities=13% Similarity=0.159 Sum_probs=105.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.+.+++++ ++.|+.|+.+|.|++.+....- .... .|+.. ..+|.++++|+.||.
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~-----------------~~s~~------~~~Gey~asCS~DGk 94 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNF-----------------DHSSS------ILEGEYVASCSDDGK 94 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-cccc-----------------ccccc------ccCCceEEEecCCCc
Confidence 46666664 6789999999999999876432 1111 11111 457999999999999
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecC----CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDE----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp 326 (491)
|.|-.+.+.+...++ ....++.+++++|. ..+.+++|+..| +.++..+-.+ ....+ .+..-.++|.++.|.
T Consensus 95 v~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg-nk~~v-~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 95 VVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG-NKDSV-VLSEGEGPIHSIKWR- 169 (846)
T ss_pred EEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc-Cccce-eeecCccceEEEEec-
Confidence 999999888776665 45678999999843 256789999988 7777654222 11222 455667899999996
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCC
Q 011216 327 DGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
|.++|-++.+| |++||+...+
T Consensus 170 -g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 170 -GNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred -CcEEEEecCCC-cEEEeccccc
Confidence 66888877776 8999998743
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.39 E-value=0.0008 Score=65.85 Aligned_cols=277 Identities=14% Similarity=0.120 Sum_probs=149.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccC---CceeEE--EeEeCCCCceEEEEecCCeEEEEECCCCcccccccee
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKS---LRWTVT--DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---~~~~v~--~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 210 (491)
+..+..++.++.|.-.|..+++.+-+...... ....+. .++.. ++..++.++.++.|.-+|.++|+........
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566677789999999988855543322111 000010 01111 2267788888999999999999876555433
Q ss_pred ccccccccccCCCCCceecEE-EEEEcCCCCEEEEEe---------cCCeEEEEECCCCeeeEEEeccCCC---------
Q 011216 211 EIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSD--------- 271 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~v~-~i~~s~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~--------- 271 (491)
.... ....+. ...+. +..++.++ .+|.++.+|..+++.+-++......
T Consensus 140 ~~~~-----------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 140 DQVP-----------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred CCcC-----------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 2100 000000 11111 23455543 3678999999999877665432110
Q ss_pred -----------e-EEEEEecCCCCEEEEEeCCC------------------eEEEEeCccccCCCcceeeeccccccE--
Q 011216 272 -----------V-NTVCFGDESGHLIYSGSDDN------------------LCKVWDRRCLNVKGKPAGVLMGHLEGI-- 319 (491)
Q Consensus 272 -----------v-~~i~~~~~~~~~l~s~s~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~~~i-- 319 (491)
+ ...++. +.+..++.++.++ .|.-+|.. +++.+-....-....
T Consensus 207 ~~~~~~~~g~~vw~~pa~d-~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~----tG~~~W~~~~~~~~~~~ 281 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYD-PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD----TGKVKWFYQTTPHDLWD 281 (488)
T ss_pred CcceecCCCCCccCCeeEe-CCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC----CCCEEEEeeCCCCCCcc
Confidence 1 122332 3456777777665 67777876 666655543111100
Q ss_pred ----EEEEEc----CCCC---EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 320 ----TFIDSR----GDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 320 ----~~i~~s----p~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
....+. -++. .++.++.+|.+...|.++++........
T Consensus 282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------------------------- 330 (488)
T cd00216 282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------------------------- 330 (488)
T ss_pred cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------------------
Confidence 000110 1333 5777888999999999886543221100
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEE------------------EecCCeEEEEECCCccEEEEecCCC--------CC
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYT------------------GSHDSCVYVYDLVSGEQVAALKYHT--------SP 442 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------g~~dg~i~iwd~~~~~~~~~~~~h~--------~~ 442 (491)
...+..+| ..++. ...+|.|.-.|+.+|+.+....... .+
T Consensus 331 ------------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 331 ------------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred ------------ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 00011111 11211 2245778888888888877665321 11
Q ss_pred eeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 443 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 443 v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
...-.....+..|+.++.||.|+.+|..+++...
T Consensus 397 ~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 397 HWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred ccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 1111111255688888899999999998887543
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.33 E-value=3e-07 Score=85.95 Aligned_cols=203 Identities=14% Similarity=0.185 Sum_probs=129.7
Q ss_pred cEEEEEEcCC--CCEEEEEecCCeEEEEECCCCeee--EEEeccCCCeEEEEEecCCCCEEEEEe----CCCeEEEEeCc
Q 011216 229 GIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDRR 300 (491)
Q Consensus 229 ~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~s----~dg~i~iwd~~ 300 (491)
.+.|+++.-+ ...+++|..+|.|.+-.+....-. ....++..+.++++|++-+.++|++|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 4666666543 347888999999999887654322 334578889999999988888888874 35679999997
Q ss_pred cccCCCcceeeecc-ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccC
Q 011216 301 CLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
..-...+....+.+ ......+++|-.+.+.+++|.....++++|++-.....
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--------------------------- 190 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--------------------------- 190 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---------------------------
Confidence 44212222222222 34556688999899999999999999999998421100
Q ss_pred CCCCeeEEEcccceeeeeEEEEecCcccC-CCcEEEEEecCCeEEEEEC-CCc-cEEEEecCCC----CCeeeeEecCCC
Q 011216 380 PCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDL-VSG-EQVAALKYHT----SPVRDCSWHPSQ 452 (491)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~-~~~-~~~~~~~~h~----~~v~~~~~s~~~ 452 (491)
..+.+ +.+.....+| .+.|+++-. ||.|.+||. ..- .++..+.... ..+..++|+|..
T Consensus 191 ---~svnT-----------k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 191 ---SSVNT-----------KYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred ---hhhhh-----------hhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 00000 0001112233 456776665 999999993 222 2233332222 248999999976
Q ss_pred C-eEEEEEC-CCcEEEecCCCCC
Q 011216 453 P-MLVSSSW-DGDVVRWEFPGNG 473 (491)
Q Consensus 453 ~-~l~s~~~-Dg~i~iw~~~~~~ 473 (491)
. .|++... .++|+.+++....
T Consensus 256 tglla~l~RdS~tIrlydi~~v~ 278 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICVVG 278 (783)
T ss_pred cchhhhhccCcceEEEecccccC
Confidence 6 5566554 4789999987543
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00015 Score=70.97 Aligned_cols=202 Identities=12% Similarity=0.170 Sum_probs=124.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCC-eEEEEEecCCCCEEEEEeCCC-----eEEEEeCccccCCC-
Q 011216 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG- 306 (491)
Q Consensus 234 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~- 306 (491)
+|++.+..++.|+.+|.|.+++-. -+.+..+..+... |..+-. ....++|++.+.|+ .++|||+...+.+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999998888742 3333566666666 444443 24456788777665 58999997543222
Q ss_pred -cce--eeecc-----ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccccc
Q 011216 307 -KPA--GVLMG-----HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 307 -~~~--~~~~~-----~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
.++ ..+.. ...++.+++.+.+-+.+|+|-.+|.|..+.=.-..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R----------------------------- 158 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR----------------------------- 158 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-----------------------------
Confidence 222 11222 24578899999999999999999998887522111
Q ss_pred CCCCCeeEEEcccceeeeeEEEEecCcccCCCcE-EEEEecCCeEEEEECCCccE-EEEecCCCCCeeeeEecCCCCeEE
Q 011216 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY-IYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~ 456 (491)
++..+.--.|....++....+. .+++. +++++ -..|.+|.+....+ ...+..|..++.|.++++....++
T Consensus 159 ---Drgsr~~~~~~~~~pITgL~~~----~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfI 230 (933)
T KOG2114|consen 159 ---DRGSRQDYSHRGKEPITGLALR----SDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFI 230 (933)
T ss_pred ---ccccceeeeccCCCCceeeEEe----cCCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEE
Confidence 0111111112222222232222 24555 33333 45689999874332 455778888999999987766566
Q ss_pred EEECCCcEEEecCCCCCCC
Q 011216 457 SSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 457 s~~~Dg~i~iw~~~~~~~~ 475 (491)
.++. ..|.+|+.+..+..
T Consensus 231 ca~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 231 CAGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred EecC-ceEEEEcCCCccee
Confidence 6654 45999998765543
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.25 E-value=3.8e-07 Score=85.34 Aligned_cols=205 Identities=16% Similarity=0.158 Sum_probs=129.6
Q ss_pred CceEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-CceEEEEe----cCCeEEEEE
Q 011216 125 SRAYVSQFSADG--SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYAS----MSPIVHIVD 197 (491)
Q Consensus 125 ~~v~~~~~s~dg--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~----~dg~i~iwd 197 (491)
..+.|+++.-+. ..+++|..+|.|.+-.+...... ......++....++++|++- ...||.|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345677665543 47889999999999887654222 11233455567899999984 45666653 345799999
Q ss_pred CCCCcc--ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 198 VGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 198 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
+.++-. .....+. .. .-....+++|..+.+.+.+|.....+.++|++...... ..-.+..+..+
T Consensus 136 i~s~ltvPke~~~fs---------~~----~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~ 201 (783)
T KOG1008|consen 136 INSLLTVPKESPLFS---------SS----TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGI 201 (783)
T ss_pred cccccCCCccccccc---------cc----cccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccc
Confidence 987632 1111111 10 11145588898899999999989899999997432211 11234466778
Q ss_pred EEecCCCCEEEEEeCCCeEEEEe-CccccCCCcceeeecccc----ccEEEEEEcCCC-CEEEEeeC-CCcEEEeeCCCC
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWD-RRCLNVKGKPAGVLMGHL----EGITFIDSRGDG-RYLISNGK-DQAIKLWDIRKM 348 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~----~~i~~i~~sp~~-~~l~~~~~-dg~i~iwd~~~~ 348 (491)
.+.|-..+++++-. ||.|.+|| .+. ...++..+.... ..+..++|.|.. ..+++... .++|+++|+...
T Consensus 202 tVdp~~~nY~cs~~-dg~iAiwD~~rn---ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNS-DGDIAIWDTYRN---IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred eecCCCCCceeccc-cCceeeccchhh---hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 88765778876655 99999999 441 122232222212 248899999953 23444444 467999998764
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00025 Score=67.06 Aligned_cols=155 Identities=21% Similarity=0.253 Sum_probs=95.5
Q ss_pred eEEEeEeCCCCceEEEEe---cC-CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe
Q 011216 171 TVTDTSLSPDQRHLVYAS---MS-PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~ 246 (491)
.+..-+|+|+++.++..+ .. ..+.++++++++......... .-..-+|+|||+.|+...
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g-----------------~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG-----------------NNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC-----------------ccCCccCCCCCCEEEEEE
Confidence 677789999998777653 22 469999999888766554222 233468999999877654
Q ss_pred -cCC--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE-EEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 247 -SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 247 -~dg--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
.|| .|+++|+..+... .+....+.-..-.|+ |+|+.++ +.+..|.-.||-... .+.....+......-..-
T Consensus 257 ~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~---~g~~~~riT~~~~~~~~p 331 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDL---EGSQVTRLTFSGGGNSNP 331 (425)
T ss_pred CCCCCccEEEEcCCCCcce-ecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECC---CCCceeEeeccCCCCcCc
Confidence 444 4777888877743 344333333466787 5565555 445556544444331 233334444333333377
Q ss_pred EEcCCCCEEEEeeCC-Cc--EEEeeCCC
Q 011216 323 DSRGDGRYLISNGKD-QA--IKLWDIRK 347 (491)
Q Consensus 323 ~~sp~~~~l~~~~~d-g~--i~iwd~~~ 347 (491)
.|+|||++|+..+.. |. |.+.|+.+
T Consensus 332 ~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 332 VWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred cCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 899999999877643 43 55555544
No 340
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.22 E-value=0.0035 Score=59.62 Aligned_cols=194 Identities=13% Similarity=0.098 Sum_probs=103.5
Q ss_pred EEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 128 YVSQFSADGSLFVAGFQA-----------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~d-----------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
+.++.+|.|.-+|....+ ..|.||+.... .+..... .. +.|.++.|+.+.. |++...||.++++
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~-ll~~i~w-~~--~~iv~~~wt~~e~-LvvV~~dG~v~vy 106 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK-LLSSIPW-DS--GRIVGMGWTDDEE-LVVVQSDGTVRVY 106 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC-EeEEEEE-CC--CCEEEEEECCCCe-EEEEEcCCEEEEE
Confidence 345677777777766444 15999997654 5555333 33 5799999988655 5566789999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEEE---eccC---
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---LAHT--- 269 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---~~~~--- 269 (491)
|+.... ...+...... ..-....+....+..+| ++.-..++.+++.+-.... ..+.+ ....
T Consensus 107 ~~~G~~---~fsl~~~i~~-------~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~ 174 (410)
T PF04841_consen 107 DLFGEF---QFSLGEEIEE-------EKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKF 174 (410)
T ss_pred eCCCce---eechhhhccc-------cCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccc
Confidence 986433 1111110000 00011123333444455 3333445555554332221 11111 1100
Q ss_pred ---CCeEE-EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeC
Q 011216 270 ---SDVNT-VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 270 ---~~v~~-i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~ 345 (491)
..... ..+. .+....+....++.+.+.+-. .... + ...+++..|+.||+++++|.-..+|.+.+...
T Consensus 175 ~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~----~~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 175 HWWPSWTVIPLLS-SDRVVEILLANGETIYIIDEN----SFKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred ccccccccceEee-cCcceEEEEecCCEEEEEEcc----cccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 01111 2232 344444555555666644432 1111 1 12468999999999999999999999888865
Q ss_pred CC
Q 011216 346 RK 347 (491)
Q Consensus 346 ~~ 347 (491)
.-
T Consensus 246 Df 247 (410)
T PF04841_consen 246 DF 247 (410)
T ss_pred cc
Confidence 43
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.19 E-value=0.0006 Score=63.79 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=106.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCC----------------ceeEEEeEeCCCCceEEEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL----------------RWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----------------~~~v~~l~~sp~~~~l~~~ 187 (491)
...+....|||||+.+|... ++.|.+++..++...+. +..+. -+.-..+-||||+++|+..
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 56788999999999999885 57899999888733322 22220 0122457799999999987
Q ss_pred ecCC----eEEEEECCCCcc--ccccceeccc----------------ccc--ccccC-CCCCceecEEEEEEcCCCCEE
Q 011216 188 SMSP----IVHIVDVGSGTM--ESLANVTEIH----------------DGL--DFSAA-DDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 188 ~~dg----~i~iwd~~~~~~--~~~~~~~~~~----------------~~~--~~~~~-~~~~h~~~v~~i~~s~~~~~l 242 (491)
..|. .+.+-+...... .......-.. .+. ..... ....-...+..+.|.++++.|
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred EECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 5442 222222211110 0000000000 000 00000 000123368899999999844
Q ss_pred EEEec--C---CeEEEEECCCCeeeEEEec-cCCCe---EEEEEe-cCCCCEEEEEeCCCeEEEEeCccccCCCcceeee
Q 011216 243 VAGSS--D---DCIYVYDLEANKLSLRILA-HTSDV---NTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 243 ~~~~~--d---g~i~vwd~~~~~~~~~~~~-~~~~v---~~i~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 312 (491)
+..-. + ..+.+.|..+++....+.. ....| ....|. +.+..+|.....+|.-+|+-+. ..+.....+
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~---~~~~~~~~l 275 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYD---LDGGKPRQL 275 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEE---TTSSEEEES
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEc---ccccceecc
Confidence 44332 2 2477778877665433332 22222 345554 5666677777788865555443 133334455
Q ss_pred ccccccEEE-EEEcCCCCEEE-EeeC
Q 011216 313 MGHLEGITF-IDSRGDGRYLI-SNGK 336 (491)
Q Consensus 313 ~~~~~~i~~-i~~sp~~~~l~-~~~~ 336 (491)
....-.|.. +.++++++.|. ++..
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred ccCceeecccceEcCCCCEEEEEecC
Confidence 544555644 66788777654 4433
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.19 E-value=0.0017 Score=60.84 Aligned_cols=276 Identities=12% Similarity=0.133 Sum_probs=132.4
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC---Cc
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS---GT 202 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~---~~ 202 (491)
.|..+.|+++..-|++|...|.|.||.....+........ .-..+.+.+-+ ..++.-.+-|+.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~-----~~~~~~~~~~~------~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQP-----PDLDYNFRRFS------LNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCC-----cccCccccccc------ccCCCcceEEehhhCCcc
Confidence 5889999999999999999999999987654222100000 11111111100 0011112222221 11
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe--c------cCCCeEE
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--A------HTSDVNT 274 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~ 274 (491)
...-+...... ....++|++++.|.-| ++++|..+|.+.|.|++....+..-. . ....|++
T Consensus 72 ~~~gf~P~~l~----------~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ 140 (395)
T PF08596_consen 72 LKEGFLPLTLL----------DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTS 140 (395)
T ss_dssp -SEEEEEEEEE-------------S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEE
T ss_pred cccccCchhhe----------eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeE
Confidence 10000000000 0113489999998555 89999999999999998887765522 1 2346888
Q ss_pred EEEe----cCCC---CEEEEEeCCCeEEEEeCccccCCCcce----eeeccccccEEEEE-EcCC-C-------------
Q 011216 275 VCFG----DESG---HLIYSGSDDNLCKVWDRRCLNVKGKPA----GVLMGHLEGITFID-SRGD-G------------- 328 (491)
Q Consensus 275 i~~~----~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~i~~i~-~sp~-~------------- 328 (491)
+.|+ ..++ -.+++|+..|.+.+|.+.... .+... .....+.++|..|. ++.+ |
T Consensus 141 ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~-~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l 219 (395)
T PF08596_consen 141 IEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSS-NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGL 219 (395)
T ss_dssp EEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-G-GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGG
T ss_pred EEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCC-CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcc
Confidence 8886 1222 368899999999999874111 11111 11123445555444 2211 1
Q ss_pred ------CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 329 ------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 329 ------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
..+++...+..++++...+.+. .-+.+ ....... .+.+
T Consensus 220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~---------------------------------~~K~~-~~~~~~~--~~~v 263 (395)
T PF08596_consen 220 SKGISIPGYVVVVSESDIRVFKPPKSKG---------------------------------AHKSF-DDPFLCS--SASV 263 (395)
T ss_dssp GGT----EEEEEE-SSEEEEE-TT---E---------------------------------EEEE--SS-EEEE--EEEE
T ss_pred ccCCCcCcEEEEEcccceEEEeCCCCcc---------------------------------cceee-ccccccc--eEEE
Confidence 1233333455678877665221 11112 1111111 1111
Q ss_pred cCcc-cCCCcEEEEEecCCeEEEEECCCccEEEEecCCC----CCeeeeEecCCCCeEEEEEC
Q 011216 403 SPVY-STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT----SPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 403 ~~~~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~~s~~~~~l~s~~~ 460 (491)
-+.. ...+..|++-..+|.|++|.+..-+.+..++... ..+...+++++|..++-.+.
T Consensus 264 v~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 264 VPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred EeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 0000 1246678888899999999999999888776432 34667788999997766653
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=0.0012 Score=62.66 Aligned_cols=182 Identities=17% Similarity=0.100 Sum_probs=95.2
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
..-....+.++|+|++++++ .||...|+....... .. .+.-...+|.+.++ +|+-...++|.|+.--+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-k~-------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-KA-------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-EE-------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-cc-------cCceeEEEEecCcc-EEEEECCCeEEEEEcCccc
Confidence 34446789999999999985 677888888544311 11 12455688998665 5555568889996432222
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (491)
.......+. .+..+-. |..|...+. +.|.+||+.+++.++++... +|..+.|+ +++
T Consensus 101 ~~k~i~~~~-----------------~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~g 156 (443)
T PF04053_consen 101 VVKSIKLPF-----------------SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWS-DDG 156 (443)
T ss_dssp TT-----SS------------------EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE--TTS
T ss_pred cceEEcCCc-----------------ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEE-CCC
Confidence 211122110 1222222 776666654 48999999999999888533 38999998 788
Q ss_pred CEEEEEeCCCeEEEEeCccc-----cCCC--cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEE
Q 011216 283 HLIYSGSDDNLCKVWDRRCL-----NVKG--KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (491)
Q Consensus 283 ~~l~s~s~dg~i~iwd~~~~-----~~~~--~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~i 342 (491)
++++..+.+ .+.+++.... ...+ .....+......|.+..|..+ .++-.... .|+.
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 888888755 6777765311 0000 133334333567888888766 44444333 5555
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.14 E-value=0.009 Score=57.49 Aligned_cols=200 Identities=20% Similarity=0.217 Sum_probs=108.8
Q ss_pred ceEEEEEcCCCCEEEEEE-CC----CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC---------
Q 011216 126 RAYVSQFSADGSLFVAGF-QA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------- 191 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~-~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg--------- 191 (491)
.+...++||||++||.+- .. ..|+++|+.+++.+...+... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344678999999998653 33 369999999996665433221 122399999998887765433
Q ss_pred --eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---C-CeEEEEECCCC----ee
Q 011216 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---D-DCIYVYDLEAN----KL 261 (491)
Q Consensus 192 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---d-g~i~vwd~~~~----~~ 261 (491)
.|..|.+.++......-...... ......+..++|+++|+.... + ..+++.|+..+ ..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDE------------PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTC------------TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred CcEEEEEECCCChHhCeeEEeecCC------------CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 47888887765432221111110 012567889999998876543 2 45888888875 23
Q ss_pred eEEEeccCCCeE-EEEEecCCCCEEEEEeC---CCeEEEEeCccccCCCcceeeecccccc--EEEEEEcCCCCEEEEe-
Q 011216 262 SLRILAHTSDVN-TVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLISN- 334 (491)
Q Consensus 262 ~~~~~~~~~~v~-~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~i~~sp~~~~l~~~- 334 (491)
...+......+. .+... ++.+++.... .+.|.-.++..... ......+..+... +..+.. .+.+|+..
T Consensus 269 ~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~ 343 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSL--FKDYLVLSY 343 (414)
T ss_dssp EEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred cEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence 334444444443 34443 3444443322 35666667652211 0112244455553 444444 44455544
Q ss_pred eCCC--cEEEeeCC
Q 011216 335 GKDQ--AIKLWDIR 346 (491)
Q Consensus 335 ~~dg--~i~iwd~~ 346 (491)
..++ .|+++++.
T Consensus 344 ~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 344 RENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEEEETT
T ss_pred EECCccEEEEEECC
Confidence 3343 48888887
No 345
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.09 E-value=0.0069 Score=59.36 Aligned_cols=259 Identities=14% Similarity=0.104 Sum_probs=134.4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC--CCceEEEEe---------cCCeEEEEECCCCcccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYAS---------MSPIVHIVDVGSGTMES 205 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~---------~dg~i~iwd~~~~~~~~ 205 (491)
..++.++.+|.|.-+|..+|+.+-+.......... ..+.-+| .+..++.++ .++.+..+|..+|+...
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~-~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPG-YTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcc-eEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 57778888999999999998666554322210000 0111112 123444443 36789999999998766
Q ss_pred ccceeccccccccccCCCC----Ccee-cE-EEEEEcCCCCEEEEEecCC------------------eEEEEECCCCee
Q 011216 206 LANVTEIHDGLDFSAADDG----GYSF-GI-FSLKFSTDGRELVAGSSDD------------------CIYVYDLEANKL 261 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~----~h~~-~v-~~i~~s~~~~~l~~~~~dg------------------~i~vwd~~~~~~ 261 (491)
........ ...+...... .+.+ .+ ...++.+.+..+++++.++ .|.-+|..+++.
T Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 190 RFYTTEPD-PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred EeeccCCC-cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 54432110 0000000000 0000 11 1245555566777777665 799999999998
Q ss_pred eEEEec--cCC----CeEEEEEe---cCCCC---EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC
Q 011216 262 SLRILA--HTS----DVNTVCFG---DESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 262 ~~~~~~--~~~----~v~~i~~~---~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~ 329 (491)
.-.+.. |.. ......+. +.++. .++.++.+|.+...|.+ +++.+...... ...++.+| .
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~----tG~~~W~~~~~---~~~~~~~~--~ 339 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT----TGKLISARPEV---EQPMAYDP--G 339 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC----CCcEeeEeEee---ccccccCC--c
Confidence 766542 211 00111111 01232 67888899999999998 66666543311 11233343 2
Q ss_pred EEEEe------------------eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc
Q 011216 330 YLISN------------------GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 330 ~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
.+..+ ..+|.|.-.|+.+++.......... .....+...
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~-----------------------~~~~~~g~~ 396 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTI-----------------------RDSWNIGFP 396 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcc-----------------------ccccccCCc
Confidence 22222 1345666666666443222110000 000000000
Q ss_pred ceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC
Q 011216 392 SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 438 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 438 (491)
. +.......+.+|++++.||.|+.+|..+|+.+.+++.
T Consensus 397 ~---------~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 397 H---------WGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred c---------cCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 0 0000011467899999999999999999999988764
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00012 Score=69.97 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=99.9
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
..|.--+++..+++++.|+.-|.+.+|+-..+.......- +-.+.+..+..+++..++|+|+..|
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---------------~~~~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---------------GATGITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc---------------CccceEEEEEecchhHhhhhhcCCc
Confidence 3566667888899999999999999999887766443321 1122566677888888899999999
Q ss_pred eEEEEECCCCeeeEE-----E-eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 250 CIYVYDLEANKLSLR-----I-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~-----~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
.|.++-+....+... . ..|...|++++|+ +++..+++|...|+|..-.+.....-......+......|..+.
T Consensus 99 ~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD 177 (726)
T KOG3621|consen 99 RVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLD 177 (726)
T ss_pred eEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEee
Confidence 999998876432211 1 1477899999998 89999999999999998887631111122333334456676676
Q ss_pred Ec
Q 011216 324 SR 325 (491)
Q Consensus 324 ~s 325 (491)
..
T Consensus 178 ~~ 179 (726)
T KOG3621|consen 178 YL 179 (726)
T ss_pred cc
Confidence 65
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.0051 Score=53.47 Aligned_cols=203 Identities=13% Similarity=0.161 Sum_probs=110.8
Q ss_pred cEEEEEEcCCCC-EEEEEecCCeEEEEECCCCeeeEEEecc-CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC
Q 011216 229 GIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 229 ~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
.+..++|.|+.+ ++++....+.|..++. +++.++++.-. .+..-.|++. .++.++++--.++.+.++++.......
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccccc
Confidence 699999999755 5666677888988887 47777776532 4678999996 666666666568999999884221111
Q ss_pred --cceeee-----ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccC
Q 011216 307 --KPAGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 379 (491)
Q Consensus 307 --~~~~~~-----~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
.....+ ..+...+-.++|+|.++.|+++-...-..+|.+........
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~-------------------------- 154 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFD-------------------------- 154 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS---------------------------
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccc--------------------------
Confidence 111111 12445689999999888888777766667776654210000
Q ss_pred CCCCeeEEEcccc----eeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC---------CCeeee
Q 011216 380 PCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRDC 446 (491)
Q Consensus 380 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~~ 446 (491)
-.+....... ....+....+.+. .+++++.......|..+| .+|+++..+.-.. ...-.|
T Consensus 155 ---~~~~~~~~~~~~~~~~~d~S~l~~~p~---t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 155 ---LFVSDDQDLDDDKLFVRDLSGLSYDPR---TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp ----EEEE-HHHH-HT--SS---EEEEETT---TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred ---eeeccccccccccceeccccceEEcCC---CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence 0000000000 1112233334443 567778888888999999 5788776554221 246789
Q ss_pred EecCCCCeEEEEECCCcEEEe
Q 011216 447 SWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 447 ~~s~~~~~l~s~~~Dg~i~iw 467 (491)
+|.++|.+.++ +.-+.++++
T Consensus 228 a~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEE-ETTTEEEEE
T ss_pred EECCCCCEEEE-cCCceEEEe
Confidence 99999975554 455555544
No 348
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.01 E-value=0.0027 Score=57.29 Aligned_cols=148 Identities=16% Similarity=0.087 Sum_probs=90.0
Q ss_pred CCCceEEEEecCCeEEEEECC-CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC
Q 011216 179 PDQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~ 257 (491)
..++.|+.|..+| +.+++.. ........ +...|..+...++-+.|++-+ |+.++++++.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~ 64 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLD 64 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe------------------ecceEEEEEEecccCEEEEEc-CCccEEEEch
Confidence 4578899999888 8888882 22221111 122588899998877666654 5999999987
Q ss_pred CCeeeEE--------------EeccCCCeEEEE-EecCCCCEEEEEeCCCeEEEEeCccccCCC-cceeeeccccccEEE
Q 011216 258 ANKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITF 321 (491)
Q Consensus 258 ~~~~~~~--------------~~~~~~~v~~i~-~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~ 321 (491)
.-..... .......+...+ -....+...+.......|.+|......... .....+. -.+.+..
T Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~ 143 (275)
T PF00780_consen 65 SLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSS 143 (275)
T ss_pred hhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEE
Confidence 6543331 112233444444 112334444445555689998886322222 3444444 3477889
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCCCCC
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 350 (491)
++|. ++.++.|..+ ...+.|+.+...
T Consensus 144 i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 144 IAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred EEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 9998 4577777655 478888886543
No 349
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.014 Score=55.21 Aligned_cols=262 Identities=16% Similarity=0.151 Sum_probs=156.2
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEE-EEecCCeEEEEECCCCcc
Q 011216 126 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-~~~~dg~i~iwd~~~~~~ 203 (491)
....+...++|..+.... ....+.+.+.... .......... .....++.++.+..+. ....++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~~~~~g~--~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQSLSVGG--VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeeeeccCCC--ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 445677888885444433 2224555554421 1211111111 3456778888887444 444568999999766655
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECCCCeeeEEEeccCCCeEEEEEecC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
........ ....++++++++.+.++.. ++.+.+.|..+++.......-..+ ..+++. +
T Consensus 109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p 169 (381)
T COG3391 109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P 169 (381)
T ss_pred eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence 44433322 3567899999987777765 689999999999888775443344 889997 6
Q ss_pred CCCEEEE-EeCCCeEEEEeCccccCCCccee-e---eccccccEEEEEEcCCCCEEEEeeCC---CcEEEeeCCCCCCcc
Q 011216 281 SGHLIYS-GSDDNLCKVWDRRCLNVKGKPAG-V---LMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNA 352 (491)
Q Consensus 281 ~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~-~---~~~~~~~i~~i~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~ 352 (491)
+++.++. -..++.|.+.|.. ...... . ...-......+.++|+|..+.+.... +.+...|..+...
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~----~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v-- 243 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTS----GNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV-- 243 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCC----CcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE--
Confidence 6765544 4578999999975 222221 0 11122334578899999866654433 4788888776221
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEEEEECCCcc
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~ 431 (491)
....... ... .......+|+|+.+.+... .+.+.+-|..+..
T Consensus 244 ---------------------------------~~~~~~~---~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 244 ---------------------------------TATDLPV---GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ---------------------------------EEecccc---ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 1110000 000 1123356778998888855 4889999998887
Q ss_pred EEEEecCCC---CCeeeeEecCCC
Q 011216 432 QVAALKYHT---SPVRDCSWHPSQ 452 (491)
Q Consensus 432 ~~~~~~~h~---~~v~~~~~s~~~ 452 (491)
....+.... ..+..+++.+..
T Consensus 287 v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 287 VVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred eeeeecccccccccceeccceeec
Confidence 776654332 234555555543
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.98 E-value=0.004 Score=59.33 Aligned_cols=141 Identities=18% Similarity=0.132 Sum_probs=80.1
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.+..+.++|+|++++++ .+|.-.|+.....+.. ..+....+.|.+.++ +|+-...+.
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k---------------------~~G~g~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK---------------------AFGSGLSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE---------------------EEEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc---------------------ccCceeEEEEecCcc-EEEEECCCe
Confidence 47789999999999885 4788888873322211 112456788998554 677766888
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
|.++.--..+....+.. ...+..|-. |.+|+..+.+ .|.+||.. .++.+..+... +|..+.|++++.+
T Consensus 91 I~I~kn~~~~~~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~----~~~~i~~i~v~--~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWE----TGKLIRRIDVS--AVKYVIWSDDGEL 158 (443)
T ss_dssp EEEEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TT----T--EEEEESS---E-EEEEE-TTSSE
T ss_pred EEEEEcCccccceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhh----HcceeeEEecC--CCcEEEEECCCCE
Confidence 99963323222223321 122333322 6677666655 89999997 77778777643 4899999999999
Q ss_pred EEEeeCCCcEEEeeCCC
Q 011216 331 LISNGKDQAIKLWDIRK 347 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~ 347 (491)
++..+.+ .+.|++...
T Consensus 159 val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEE-S--SEEEEEE-H
T ss_pred EEEEeCC-eEEEEEecc
Confidence 9988765 577776543
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.017 Score=54.59 Aligned_cols=202 Identities=14% Similarity=0.120 Sum_probs=128.4
Q ss_pred cEEEEEEcCCCCEEE-EEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC---CCeEEEEeCccccC
Q 011216 229 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNV 304 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~ 304 (491)
....++.++.+..++ ....++.|.+.|..+.+......--. ....+++. +++..++.+.. ++++.+.|..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~---- 148 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAA---- 148 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEEC-CCCCEEEEEecccCCceEEEEeCC----
Confidence 345678888887444 44456889999988777665554222 66788897 55655555544 6888888875
Q ss_pred CCcceeeeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCC
Q 011216 305 KGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 305 ~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
..+.......-..+ ..++++|+|..+++. ..++.|.+.|......
T Consensus 149 t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v--------------------------------- 194 (381)
T COG3391 149 TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV--------------------------------- 194 (381)
T ss_pred CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce---------------------------------
Confidence 44555443322234 789999999966555 4788899999665221
Q ss_pred eeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC---CeEEEEECCCccEEEE-ecCCCCCeeeeEecCCCCeEEEEE
Q 011216 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~ 459 (491)
.. .............+...++|+|.++.+.... +.+...|..++..... +.........+..+|+|..+.+..
T Consensus 195 --~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 195 --VR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN 271 (381)
T ss_pred --ec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEe
Confidence 11 0000001111112233567789877776554 5899999988877665 221111467789999999888874
Q ss_pred C-CCcEEEecCCCCC
Q 011216 460 W-DGDVVRWEFPGNG 473 (491)
Q Consensus 460 ~-Dg~i~iw~~~~~~ 473 (491)
. .+.+.+-|.....
T Consensus 272 ~~~~~V~vid~~~~~ 286 (381)
T COG3391 272 SQGGTVSVIDGATDR 286 (381)
T ss_pred cCCCeEEEEeCCCCc
Confidence 4 4778888776654
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00016 Score=70.56 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=86.9
Q ss_pred EEeEeCCCCceEEEEec----CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC
Q 011216 173 TDTSLSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 173 ~~l~~sp~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d 248 (491)
+-..|+|...++++++. .|.|.||- ++|+...-.. .+..+++++|+|..-.|+.|-.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cceehhhhccChHHHHHhhcccc
Confidence 34579999999998874 46788874 4454322111 22257789999998889999999
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
|.+.+|...+.+.......|..+|..+.|+ ++|+.++++..-|.|.+|...
T Consensus 81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence 999999998887766667899999999998 889999999999999999875
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.93 E-value=0.0061 Score=56.31 Aligned_cols=217 Identities=16% Similarity=0.175 Sum_probs=119.1
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC----CCEEEEEec---------C-CeEEEEEC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGSS---------D-DCIYVYDL 256 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~~~~~---------d-g~i~vwd~ 256 (491)
+.|++.|..+.+......+.... +...+..+.+..+ ..+|++|+. . |.|.++++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E------------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i 69 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNE------------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEI 69 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTE------------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCc------------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEE
Confidence 35788888777765555444322 2223444455443 467777753 2 89999999
Q ss_pred CCC----eeeEEE--eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc--ccccEEEEEEcCCC
Q 011216 257 EAN----KLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDG 328 (491)
Q Consensus 257 ~~~----~~~~~~--~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~i~~sp~~ 328 (491)
... ..+..+ ....++|++++-. ++.++++. .+.|.+|++. ....+..... ....+.++... +
T Consensus 70 ~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~----~~~~l~~~~~~~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 70 SESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLD----NSKTLLKKAFYDSPFYITSLSVF--K 139 (321)
T ss_dssp CSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEE----TTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred EcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEcc----CcccchhhheecceEEEEEEecc--c
Confidence 884 122211 2567899999875 44433333 4799999997 3331222222 22356666655 5
Q ss_pred CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC
Q 011216 329 RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 408 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 408 (491)
.++++|.....+.++..+... ..+..+........+..+.+- +
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~---------------------------------~~l~~va~d~~~~~v~~~~~l----~ 182 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEEN---------------------------------NKLILVARDYQPRWVTAAEFL----V 182 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTT---------------------------------E-EEEEEEESS-BEEEEEEEE-----
T ss_pred cEEEEEEcccCEEEEEEEccC---------------------------------CEEEEEEecCCCccEEEEEEe----c
Confidence 599999888888887554311 222222222222223333222 2
Q ss_pred CCcEEEEEecCCeEEEEECCC-------cc--E--EEEecCCCCCeeee---EecCC--CC------eEEEEECCCcEEE
Q 011216 409 GQKYIYTGSHDSCVYVYDLVS-------GE--Q--VAALKYHTSPVRDC---SWHPS--QP------MLVSSSWDGDVVR 466 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~-------~~--~--~~~~~~h~~~v~~~---~~s~~--~~------~l~s~~~Dg~i~i 466 (491)
+++.++++..+|.+.++.... +. . +..+. ....|+++ ++.|. +. .++-++.+|.|.+
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 446899999999999998752 22 2 22332 34567777 55552 22 4788889999884
Q ss_pred e
Q 011216 467 W 467 (491)
Q Consensus 467 w 467 (491)
.
T Consensus 262 l 262 (321)
T PF03178_consen 262 L 262 (321)
T ss_dssp E
T ss_pred E
Confidence 3
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.91 E-value=0.029 Score=55.33 Aligned_cols=195 Identities=16% Similarity=0.190 Sum_probs=106.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCc-eeEEE-------eEeCCCCceEEEEecCCeEEEEECCCCcccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTD-------TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~v~~-------l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (491)
+..|++++.++.|.-.|..+|+.+-+........ ..+.+ +++ .+..+++++.++.|.-+|..+|+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778888888998886554432211100 00001 122 2345777888999999999999886654
Q ss_pred ceeccccccccccCCCCCceecEEE-EEEcCCCCEEEEEec------CCeEEEEECCCCeeeEEEeccC-----------
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT----------- 269 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~-i~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~----------- 269 (491)
........ + .+.+ -... ++ .++++.. +|.|.-+|.++++.+-++..-.
T Consensus 147 ~~~~~~~~----------~--~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 147 KNGDYKAG----------Y--TITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred cccccccc----------c--cccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccc
Confidence 43211100 0 1111 0111 34 4555432 6889999999998765443110
Q ss_pred --------------------CCeE-EEEEecCCCCEEEEEeCC-----C-----------eEEEEeCccccCCCcceeee
Q 011216 270 --------------------SDVN-TVCFGDESGHLIYSGSDD-----N-----------LCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 270 --------------------~~v~-~i~~~~~~~~~l~s~s~d-----g-----------~i~iwd~~~~~~~~~~~~~~ 312 (491)
..+. .+++- +...+++.+... + .|.-.|++ +++..-.+
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D-~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~----TG~~~W~~ 287 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYD-PETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD----TGKIKWHY 287 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeEc-CCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc----cCCEEEee
Confidence 0111 23442 445566665532 1 34444554 45555444
Q ss_pred cccccc---------EEEEEEcCCCC---EEEEeeCCCcEEEeeCCCCCCc
Q 011216 313 MGHLEG---------ITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 313 ~~~~~~---------i~~i~~sp~~~---~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
+..... ..-+....+|+ .++.+..+|.+.+.|-++++..
T Consensus 288 Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 288 QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 332111 11223334665 7788999999999999987653
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.88 E-value=0.015 Score=53.81 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=106.2
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEe---EeCCC----CceEEEEec----------CCeEEEEECCCC-----cc
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDT---SLSPD----QRHLVYASM----------SPIVHIVDVGSG-----TM 203 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l---~~sp~----~~~l~~~~~----------dg~i~iwd~~~~-----~~ 203 (491)
+.|++.|..+.+.+........ + .+.++ .+..+ ..+|++|.. .|.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-E-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-E-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-c-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 3678888877766654333222 2 34444 44433 467887753 288999999874 11
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEEEe-ccCCCeEEEEEecCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDES 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~-~~~~~v~~i~~~~~~ 281 (491)
...... ...++|++++-- ++ +|+++. .+.|.+|++...+ ....-. .....+.++...
T Consensus 80 ~~i~~~---------------~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--- 138 (321)
T PF03178_consen 80 KLIHST---------------EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--- 138 (321)
T ss_dssp EEEEEE---------------EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---
T ss_pred EEEEEE---------------eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---
Confidence 111111 123378888776 44 455444 5789999998887 433222 233467777765
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceeeec--cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+++++.|.....+.++..+. ....+..+. .....++++.+-++++.++.+..+|.+.++....
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~---~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDE---ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TTEEEEEESSSSEEEEEEET---TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ccEEEEEEcccCEEEEEEEc---cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 56899999888888876542 122222222 2244588888886667999999999999998763
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.0016 Score=63.12 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=114.9
Q ss_pred EEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC----eEEEEECCCCccc
Q 011216 130 SQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTME 204 (491)
Q Consensus 130 ~~~s~dg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg----~i~iwd~~~~~~~ 204 (491)
+=++|||+.+... -..+.+.+.|.++.+...+..... ....++++|+|+++++.+.+. ++...+..+....
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg----npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG----NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV 273 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC----CcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence 3467788765433 335678888888765544443322 345678999999998887432 3333333221111
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC----CeeeEEEeccCCCeEEEEEecC
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----NKLSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~i~~~~~ 280 (491)
..+.... .-++.++|++...+ ++.|.+.|..+ +..+..+..-......+.++ |
T Consensus 274 vvfni~~--------------------iea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vS-P 330 (635)
T PRK02888 274 VVFNIAR--------------------IEEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTS-P 330 (635)
T ss_pred EEEchHH--------------------HHHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEEC-C
Confidence 1111000 01345578876663 67899999988 33333333455667899998 6
Q ss_pred CCCEEEE-EeCCCeEEEEeCccccC--------CCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 281 SGHLIYS-GSDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 281 ~~~~l~s-~s~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+++++++ +..+.+|.|.|+..... ....+....- .......+|.++|....+..-|..|..||+..
T Consensus 331 DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 331 DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 6666555 55689999999973221 0011222221 12234678999999888889999999999876
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.79 E-value=7.2e-05 Score=43.76 Aligned_cols=39 Identities=38% Similarity=0.655 Sum_probs=34.4
Q ss_pred ccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 430 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 430 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
++++..+..|...|.+++|++++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 358
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.0086 Score=51.89 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=117.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
.++.+..+.+.++.|+|+.+.|++......-.||=..+|..+..... .+.. ..-.|.+.-++++.++--.++.+.++.
T Consensus 79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-TGFS-DPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-cccC-ChhHeEEecCCEEEEEehhcceEEEEE
Confidence 34556666799999999999988887777777776666755555433 3222 356688888888888887888999888
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE---Eecc------
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAH------ 268 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~~------ 268 (491)
+..+.......... ++......-+.....++|.|....|+.+-+..-+.||.+........ ...+
T Consensus 157 vd~~t~~~~~~~~~------i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQK------IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceE------EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence 87664322222111 11111111134678899999988888888877777777654331111 1111
Q ss_pred -CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 269 -TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 269 -~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
-..|.++.|.+..+++++-+.+++.+.-.|..
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 24578889988889999999999999888874
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.78 E-value=0.0031 Score=62.47 Aligned_cols=195 Identities=12% Similarity=0.097 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-CeEEE
Q 011216 125 SRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHI 195 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~------~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g~i~i 195 (491)
..+...++||||+.+|..- .|+ .|.+++.... .... . .+. ..+.-.|+|||+.|++.... ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~l-t-~g~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQV-L-EGH--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceee-e-cCC--CCCCceECCCCCceEEEecCcceEEE
Confidence 4678899999999887655 233 5555565332 2222 2 222 37778999999988887543 22333
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEE---EECCCCeee----EEEec-
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANKLS----LRILA- 267 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~v---wd~~~~~~~----~~~~~- 267 (491)
.+............... .... .....|..+.|||||..++... +|.|++ -....+... ..+..
T Consensus 424 ~~~~~~gql~~~~vd~g----e~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 424 IRDPATGQLARTPVDAS----AVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred eccCCCceEEEEeccCc----hhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 32211111110010000 0000 1123699999999999888766 577877 454455411 11222
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc--ccccEEEEEEcCCCCEEEEeeCCCcEE
Q 011216 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~i~~sp~~~~l~~~~~dg~i~ 341 (491)
-...+.++.|. .++.+ +.+..++...+|.+.- .+.....+.. ...++..|+-+++ .++....++.+.
T Consensus 495 l~~~~~~l~W~-~~~~L-~V~~~~~~~~v~~v~v---DG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 495 LGDTAVSLDWR-TGDSL-VVGRSDPEHPVWYVNL---DGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cCCccccceEe-cCCEE-EEEecCCCCceEEEec---CCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 23346889997 56654 4556555555666541 2222212122 3567778877763 455555565333
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.75 E-value=0.025 Score=57.31 Aligned_cols=143 Identities=15% Similarity=0.198 Sum_probs=93.7
Q ss_pred ceEEEE-ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-----CCCEEEEEecCCeEEEEE
Q 011216 182 RHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYD 255 (491)
Q Consensus 182 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-----~~~~l~~~~~dg~i~vwd 255 (491)
++|+.. .....|+-.|++.|+.+..+...... +|..++-.. +...-+.|-.+..+..||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~---------------~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI---------------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCc---------------ceeEecccccccccCCCceEEEECCCceEEec
Confidence 444443 24568999999999987776654321 233333221 123456677788899999
Q ss_pred CCCCe--eeEE-E--eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 256 LEANK--LSLR-I--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 256 ~~~~~--~~~~-~--~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
.+-.. ++.. . ........|++-+ ...+||+|+.+|.||+||.- .......+.+-..+|..|..+.||++
T Consensus 559 pR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~----g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRL----GKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred cCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeeccc----chhhhhcCCCCCCCeeEEEecCCCcE
Confidence 87532 2211 1 1234566777764 44578999999999999953 22344455677799999999999999
Q ss_pred EEEeeCCCcEEEeeCC
Q 011216 331 LISNGKDQAIKLWDIR 346 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~ 346 (491)
|++.+ +..|.+++..
T Consensus 633 ilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 633 ILATC-KTYLLLIDTL 647 (794)
T ss_pred EEEee-cceEEEEEEe
Confidence 88665 4567888764
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.0036 Score=58.76 Aligned_cols=204 Identities=13% Similarity=0.077 Sum_probs=107.2
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecc-----CCceeEEEeEeCC-----CC---ceE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSP-----DQ---RHL 184 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~l~~sp-----~~---~~l 184 (491)
..++...++|++++.|.=| ++|+|..+|.+.|.|++....+....... .....|+++.|+. |+ -.|
T Consensus 80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 4556668999999998555 89999999999999998876666533322 2334677888862 33 478
Q ss_pred EEEecCCeEEEEECCC-CccccccceeccccccccccCCCCCceecEEEEE-EcCC-----------------C---CEE
Q 011216 185 VYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK-FSTD-----------------G---REL 242 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~-~s~~-----------------~---~~l 242 (491)
++|...|.+.+|.+.- ..-.......... ..+.++|..+. ++.+ | .-+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~----------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGAT----------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeecc----------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 8899999999998742 1110111111100 01222333333 2111 0 123
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEe----cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc---
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG----DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--- 315 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--- 315 (491)
++...+..++++...+.+...+.....-....+.+. ...+..|++-..+|.|+++.+. .-+.+....-+
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP----~Lkei~~~~l~~~~ 304 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP----SLKEIKSVSLPPPL 304 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT----T--EEEEEE-SS--
T ss_pred EEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC----CchHhhcccCCCcc
Confidence 444456679999998877665554222223334442 1356778888999999999997 44444443321
Q ss_pred -cccEEEEEEcCCCCEEEEeeC
Q 011216 316 -LEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 316 -~~~i~~i~~sp~~~~l~~~~~ 336 (491)
...+....++++|..++-.+.
T Consensus 305 d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 305 DSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -HHHHTT-EE-TTS-EEEE-SS
T ss_pred ccccccccEECCCCCEEEEeCc
Confidence 123345567888887766544
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.69 E-value=0.0038 Score=53.56 Aligned_cols=193 Identities=17% Similarity=0.185 Sum_probs=112.1
Q ss_pred EEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec----------------
Q 011216 131 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------------- 189 (491)
Q Consensus 131 ~~s~dg~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---------------- 189 (491)
.|||||.+|.+.-. -|.|-|||...+ .++.-....|.-....+.|.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 79999999987643 378999999854 5555556666667788999999999888642
Q ss_pred --CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe-----EEEEECCCCeee
Q 011216 190 --SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS 262 (491)
Q Consensus 190 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~ 262 (491)
..++.+.|..+|+++....++... +.-.|..++..+||+.++.+-..|. -.+=-...++.+
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l------------~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASL------------RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhh------------hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 123445555555555444443221 2236788888888875554432221 111111222222
Q ss_pred EEEe-------ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee
Q 011216 263 LRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 263 ~~~~-------~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~ 335 (491)
.-+. .....|-+|+.+..++-..++.-..+...+||.. ++..+..-.- .....++- ...-+++.+
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~----tG~vv~~a~l--~daaGva~--~~~gf~vss 337 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA----TGAVVSEAAL--PDAAGVAA--AKGGFAVSS 337 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC----CCcEEecccc--ccccccee--ccCceEEec
Confidence 2221 2345678888874444444444455567899987 5554432211 11222332 333466667
Q ss_pred CCCcEEEeeC
Q 011216 336 KDQAIKLWDI 345 (491)
Q Consensus 336 ~dg~i~iwd~ 345 (491)
.+|.+.++.-
T Consensus 338 g~G~~~~~s~ 347 (366)
T COG3490 338 GQGRIIFYSR 347 (366)
T ss_pred CCceEEeccc
Confidence 7888888743
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.67 E-value=0.0066 Score=44.59 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=50.1
Q ss_pred eEEEEEecCC---CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 272 VNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 272 v~~i~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
|++|++.+-+ .+.|++|+.|..|++|+ ....+..+. ..+.|+++.-... ..++.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~------~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK------GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe------CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc
Confidence 6777776433 36899999999999998 445666655 3466777776655 568889999999998753
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.61 E-value=0.074 Score=51.21 Aligned_cols=248 Identities=16% Similarity=0.193 Sum_probs=123.6
Q ss_pred eEEEeEeCCCCceEEEEe-cCC----eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 171 TVTDTSLSPDQRHLVYAS-MSP----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
.+....++|++++++.+- ..| .++++|+.+++...-. +.. .....+.|.++++.|+..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~----------------~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN----------------PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE----------------EESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc----------------cccceEEEeCCCCEEEEE
Confidence 455788999999998763 333 6999999998653221 110 012239999998877766
Q ss_pred ecC-----------CeEEEEECCCCeee--EEEeccCCC--eEEEEEecCCCCEEEEEeC-C---CeEEEEeCccccCCC
Q 011216 246 SSD-----------DCIYVYDLEANKLS--LRILAHTSD--VNTVCFGDESGHLIYSGSD-D---NLCKVWDRRCLNVKG 306 (491)
Q Consensus 246 ~~d-----------g~i~vwd~~~~~~~--~~~~~~~~~--v~~i~~~~~~~~~l~s~s~-d---g~i~iwd~~~~~~~~ 306 (491)
..+ ..|+.|.+.+.... ..+...... ...+..+ .++++|+.... . ..+.+.|+.......
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 533 24888888776543 334333333 5677777 77777665432 2 346777775210011
Q ss_pred cceeeeccccccEE-EEEEcCCCCEEEEee---CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCC
Q 011216 307 KPAGVLMGHLEGIT-FIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (491)
Q Consensus 307 ~~~~~~~~~~~~i~-~i~~sp~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
.....+......+. .+... .+.+++... ..+.|...++.......
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~------------------------------ 315 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAE------------------------------ 315 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGG------------------------------
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccc------------------------------
Confidence 22333333333333 33333 333333322 23456666666532100
Q ss_pred CeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC--eEEEEECCCccEEEEec-CCCCCeeeeEecCCCCeE-E-E
Q 011216 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPML-V-S 457 (491)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l-~-s 457 (491)
....+-.+.....+..+. +. .+.+++....++ .|+++++..+.....+. .-.+.|..+...+++..+ + .
T Consensus 316 -~~~~l~~~~~~~~l~~~~--~~---~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 316 -WWTVLIPEDEDVSLEDVS--LF---KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp -EEEEEE--SSSEEEEEEE--EE---TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred -ceeEEcCCCCceeEEEEE--EE---CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 010111111111111111 11 344555555555 68899998344444443 234456666666666633 2 2
Q ss_pred EEC--CCcEEEecCCCCC
Q 011216 458 SSW--DGDVVRWEFPGNG 473 (491)
Q Consensus 458 ~~~--Dg~i~iw~~~~~~ 473 (491)
.|. -++++.||+.+++
T Consensus 390 ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 390 SSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EETTEEEEEEEEETTTTC
T ss_pred eCCCCCCEEEEEECCCCC
Confidence 332 3568888887764
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.05 Score=49.22 Aligned_cols=224 Identities=13% Similarity=0.149 Sum_probs=122.0
Q ss_pred eEeCCCCceEEEEe-cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEE
Q 011216 175 TSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (491)
Q Consensus 175 l~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~v 253 (491)
..|.++...|+.+. ..+.|+-|+..+++........ .+.++..-..+..|+++ ..| +.+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~------------------~~~~~~~~d~~g~Lv~~-~~g-~~~ 89 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG------------------GFSSGALIDAGGRLIAC-EHG-VRL 89 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC------------------CcccceeecCCCeEEEE-ccc-cEE
Confidence 45777777555443 5678888888766543222111 33444444444445544 333 677
Q ss_pred EECCCCeeeEEEec-----cCCCeEEEEEecCCCCEEEEEeC-----------CCeEEEEeCccccCCCcceeeeccccc
Q 011216 254 YDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSD-----------DNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 254 wd~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
++.+++.....+.. .....+.+... +++.+.++... -|.|+.+|. .+..+..+..+-.
T Consensus 90 ~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-----~g~~~~l~~~~~~ 163 (307)
T COG3386 90 LDPDTGGKITLLAEPEDGLPLNRPNDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-----DGGVVRLLDDDLT 163 (307)
T ss_pred EeccCCceeEEeccccCCCCcCCCCceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcC-----CCCEEEeecCcEE
Confidence 77765555322221 12345666775 56665554433 123333332 2444555555556
Q ss_pred cEEEEEEcCCCCEEEEeeCC-CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCe-eEEEcccceee
Q 011216 318 GITFIDSRGDGRYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYKGHSVLR 395 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 395 (491)
.-+.|+||||++.|+.+... +.|.-|++........ +.. ...+.... .
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~----------------------------~~~~~~~~~~~~--G 213 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG----------------------------GRRGFVDFDEEP--G 213 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC----------------------------CcceEEEccCCC--C
Confidence 66789999999888777554 6787777753100000 010 11111000 0
Q ss_pred eeEEEEecCcccCCCcEEEEEecCC-eEEEEECCCccEEEEecCCCCCeeeeEec-CCCCeEEEEE
Q 011216 396 TLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS 459 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~ 459 (491)
..-. .+...+|.+-+++..+| .|.+|+.. |+++..+......+++++|- |+.+.|...+
T Consensus 214 ~PDG----~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 214 LPDG----MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCc----eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 0000 12333677665555554 89999997 99999988776788999995 3445444433
No 366
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.60 E-value=0.058 Score=49.85 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=40.7
Q ss_pred CCcEEEEEecCCeEEEEECCCccEEE---E-ecCCCCCeeeeEecCCCCeEEEEECCCcEE
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGEQVA---A-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~ 465 (491)
.|.++++.-..+.|....+..+..+. . +......+.++++.|||.+.++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 57777777777888888886553322 1 234455899999999999888888899875
No 367
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.59 E-value=0.067 Score=50.27 Aligned_cols=34 Identities=15% Similarity=0.005 Sum_probs=28.5
Q ss_pred ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 315 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 315 ~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
....+.+|..+|++++.++...=|.|.++|+...
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 3445788999999998888877799999999884
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.00016 Score=59.65 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCcEEEEEecCCeEEEEECCCccEEEEecCCC-CCeeeeEecCCCCeEEEE--ECCCcEEEecCCCCCCCCC
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSS--SWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--~~Dg~i~iw~~~~~~~~~~ 477 (491)
++.+..+++.||.|+.|++.-++.+...-.|. .++..+..+..++.|+.+ |.|..++.|++....+..+
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~ 184 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESP 184 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccCc
Confidence 45688999999999999999999888887787 677777777788888888 8899999999887655443
No 369
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.57 E-value=0.051 Score=49.92 Aligned_cols=250 Identities=14% Similarity=0.130 Sum_probs=114.6
Q ss_pred ECCCCeEEEEEeeccCC--ceeEEEeEeCCCCceEEEEec-C--CeEEEEECCCCccccccceeccccccccccCCCCCc
Q 011216 152 DVERGWKIQKDILAKSL--RWTVTDTSLSPDQRHLVYASM-S--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 152 ~~~~~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
|..+|..+.++.....+ ....+.=+|.+||+.|+.++. + ..+.+.|+.+++..++......
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-------------- 81 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-------------- 81 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B--------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--------------
Confidence 55666555554333322 112233468889977777664 4 4788889999987766553211
Q ss_pred eecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEe-cCCCCEEEEEeC---------------
Q 011216 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG-DESGHLIYSGSD--------------- 290 (491)
Q Consensus 227 ~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~l~s~s~--------------- 290 (491)
......++|+.+.++.......|+-.|+.+.+....+......+-...|. +.++..++..-.
T Consensus 82 --~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 82 --NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp ---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHH
T ss_pred --CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHH
Confidence 11134667888887766666789999999988766665566666556664 345555433211
Q ss_pred -------CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC-----cEEEeeCCCCCCccccccCc
Q 011216 291 -------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 291 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~ 358 (491)
...|.--|+. .++ ...+......+..+.|+|....+++-+..| .-+||-++.-.
T Consensus 160 e~~~a~p~~~i~~idl~----tG~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------- 225 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLK----TGE-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------- 225 (386)
T ss_dssp HHHHC---EEEEEEETT----T---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---------
T ss_pred HHHhhCCCceEEEEECC----CCc-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC---------
Confidence 1123333443 222 223333445667788998655554433322 13667665421
Q ss_pred ccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-----CCeEEEEECCCccEE
Q 011216 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVSGEQV 433 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg~i~iwd~~~~~~~ 433 (491)
.....+..+.. ...+-..-|+|||..|.--+. +..|.-+|+.+++..
T Consensus 226 ------------------------~~~~~v~~~~~----~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 226 ------------------------SNVKKVHRRME----GESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp ---------------------------EESS---T----TEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred ------------------------CcceeeecCCC----CcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 11122221111 112223357778887665322 446778888888654
Q ss_pred EEecCCCCCeeeeEecCCCCeEEEEECC
Q 011216 434 AALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 434 ~~~~~h~~~v~~~~~s~~~~~l~s~~~D 461 (491)
.... ......+.-++||++++-=+.|
T Consensus 278 ~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 278 RLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 3322 2245566778899877654444
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.08 Score=50.51 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=96.6
Q ss_pred eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc--CCCcceeeeccccccEEEEEEcCC
Q 011216 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN--VKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~i~~i~~sp~ 327 (491)
.|.||+.. |+.+.++.-..+.|.++.|+ . ...|++...||.++++|+.... ..+..+....-....+....+..+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 58999875 44555555444899999997 4 4556677899999999985111 000111111111122222333445
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCccc------cccCcc-cceeecee---ecCCCCcccccCCCCCeeEEEcccce-eee
Q 011216 328 GRYLISNGKDQAIKLWDIRKMSSNAS------CNLGFR-SYEWDYRW---MDYPPQARDLKHPCDQSVATYKGHSV-LRT 396 (491)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~------~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 396 (491)
|-.+++ .++.+.+. .+...... ...... ...+.... .........+....+..+..+..+.. ...
T Consensus 139 GivvLt--~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~ 214 (410)
T PF04841_consen 139 GIVVLT--GNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQID 214 (410)
T ss_pred CEEEEC--CCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccccc
Confidence 533333 34444333 22221100 000000 00000000 00011111122222333333322221 000
Q ss_pred eEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC-CCCeeeeEecCCCCeE
Q 011216 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPML 455 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l 455 (491)
.......++.||++++||.-..+|.+.+....-.+.+..+... ......+.|.-+...+
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 0012344568889999999999999999987666666666533 3566788887665433
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00053 Score=64.94 Aligned_cols=84 Identities=13% Similarity=0.069 Sum_probs=66.3
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEE-EeEeCCCCceEEEEecCCeEEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
.+......|.-+.|+|.-.++|.+..+|.|.+..++-. ++- ...-+...++ +++|.|||+.|++|-.||+|++.|
T Consensus 15 ~~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q-Rlw---tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 15 GVMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ-RLW---TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred hhhccccceEEEEEcCccchhheeccCCcEEEEEeccc-eeE---eccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 33445677899999999999999999999999988732 222 2232333455 999999999999999999999999
Q ss_pred CCCCccccc
Q 011216 198 VGSGTMESL 206 (491)
Q Consensus 198 ~~~~~~~~~ 206 (491)
++++.....
T Consensus 91 ve~~~~l~~ 99 (665)
T KOG4640|consen 91 VEKGGRLVS 99 (665)
T ss_pred ccCCCceec
Confidence 998876544
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.55 E-value=0.014 Score=42.96 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=67.1
Q ss_pred EEEEEEcC---CC-CEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC
Q 011216 230 IFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 230 v~~i~~s~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 305 (491)
|+++++.. || +.|++|+.|..|++|+-. +.+..+ .....|++++-. ....|+.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-~e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~------ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-TETDKVTSLCSL--GGGRFAYALANGTVGVYDR------ 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-ecccceEEEEEc--CCCEEEEEecCCEEEEEeC------
Confidence 45555554 33 589999999999999754 455555 345678888775 3467999999999999984
Q ss_pred CcceeeeccccccEEEEEEc-CC--C-CEEEEeeCCCcEE
Q 011216 306 GKPAGVLMGHLEGITFIDSR-GD--G-RYLISNGKDQAIK 341 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~i~~s-p~--~-~~l~~~~~dg~i~ 341 (491)
...+...+.... ++++++. .+ | ..|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 344444443333 5555543 33 2 3688888888764
No 373
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.54 E-value=0.06 Score=48.41 Aligned_cols=279 Identities=13% Similarity=0.137 Sum_probs=122.6
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee--ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
...+..++|..+..-+|+| ..+.| +-..+.|+....... .........++.|..+ ..++ ++..+ +.+...+.|
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESSTT
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCCC
Confidence 5688999999655556665 45543 223333322222211 1111234677788543 3344 44455 334444444
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEEEeccCCCeEEEEEecC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~ 280 (491)
+.-....+....++ ....+....++. ...++..|.|+.=. +.++ .......-.+.+..+..+ +
T Consensus 91 ~tW~~v~l~~~lpg-------------s~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~-~ 154 (302)
T PF14870_consen 91 KTWERVPLSSKLPG-------------SPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS-S 154 (302)
T ss_dssp SS-EE----TT-SS--------------EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----EEEEEE--T
T ss_pred CCcEEeecCCCCCC-------------CeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC-C
Confidence 43222222111111 223333333443 33344455443322 2232 223333455778888886 8
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
+++++++++......-||-- ...-...-..-...|..|.|.|++.+.+.+ ..|.|+.=+...
T Consensus 155 dG~~vavs~~G~~~~s~~~G----~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~------------- 216 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPG----QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD------------- 216 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT-----SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT-------------
T ss_pred CCcEEEEECcccEEEEecCC----CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC-------------
Confidence 88988888777677788843 111122222345789999999998776654 788888876221
Q ss_pred ceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEE-EEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec--
Q 011216 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR-CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 437 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 437 (491)
....+..+........ -...++|.+++...++|+. |.+ +.....|+.=...+
T Consensus 217 -----------------------~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 217 -----------------------DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -----------------------EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGG
T ss_pred -----------------------CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccc
Confidence 1122221111000000 1233456667776666654 433 44445565433332
Q ss_pred -CCCCCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 438 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 438 -~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
.-...+..+.|.++.+-++. +.+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 23456888899866555554 578888766
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.50 E-value=0.021 Score=56.69 Aligned_cols=230 Identities=17% Similarity=0.195 Sum_probs=123.8
Q ss_pred CCceEEEEecC------CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----
Q 011216 180 DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 248 (491)
Q Consensus 180 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d----- 248 (491)
.+..+++|+.+ ..+..+|..++........+... .-.+++.. ++...++|+.|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r---------------~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPR---------------CRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccc---------------ccccEEEE-CCEEEEEccccCCCcc
Confidence 45566666665 36788888887665555443211 22334444 45678888888
Q ss_pred -CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCe-----EEEEeCccccCCCcceeeeccccccEEEE
Q 011216 249 -DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-----CKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 249 -g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
.++..||..+++... +..-...-.......-++.+.++|+.||. +..||.... ....+..+.......-..
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~ 424 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVA 424 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEE
Confidence 358889988887544 22111111122222246888999999874 677776522 222333222222222222
Q ss_pred EEcCCCCEEEEeeCCC------cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee
Q 011216 323 DSRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
.+ +|++.++|+.++ .+..||..+..-. .+..+.... .
T Consensus 425 ~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~--------------------------------~~~~M~~~R---~ 467 (571)
T KOG4441|consen 425 VL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT--------------------------------LIAPMNTRR---S 467 (571)
T ss_pred EE--CCEEEEEcCcCCCccccceEEEEcCCCCcee--------------------------------ecCCccccc---c
Confidence 23 677888888665 3566666552210 000111000 0
Q ss_pred eEEEEecCcccCCCcEEEEEecCC-----eEEEEECCCccEE--EEecCCCCCeeeeEecCCCCeEEEEECCCc-----E
Q 011216 397 LIRCHFSPVYSTGQKYIYTGSHDS-----CVYVYDLVSGEQV--AALKYHTSPVRDCSWHPSQPMLVSSSWDGD-----V 464 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~-----i 464 (491)
... ...-++.+.+.|+.|+ .|..||..+.+.. ..+......+..+.+ ++...++|+.||. |
T Consensus 468 ~~g-----~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~v 540 (571)
T KOG4441|consen 468 GFG-----VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTV 540 (571)
T ss_pred cce-----EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccccee
Confidence 000 1111678888888776 3788888766543 223333333333444 6778888888864 7
Q ss_pred EEecCCCC
Q 011216 465 VRWEFPGN 472 (491)
Q Consensus 465 ~iw~~~~~ 472 (491)
..||...+
T Consensus 541 e~ydp~~d 548 (571)
T KOG4441|consen 541 ECYDPETD 548 (571)
T ss_pred EEcCCCCC
Confidence 77776554
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.48 E-value=0.16 Score=51.68 Aligned_cols=63 Identities=8% Similarity=0.133 Sum_probs=50.8
Q ss_pred CCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+|++||.- +..|++|+..+.+.+..-..|..++..+...-.|..++.|..=+.|.+-.+...+
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 67777665 4679999998887777666788899999999999999999988888777665544
No 376
>PHA02713 hypothetical protein; Provisional
Probab=97.38 E-value=0.016 Score=57.71 Aligned_cols=63 Identities=5% Similarity=0.135 Sum_probs=40.0
Q ss_pred CCcEEEEEecC------CeEEEEECCC-cc--EEEEecCCCCCeeeeEecCCCCeEEEEECCC--cEEEecCCCCC
Q 011216 409 GQKYIYTGSHD------SCVYVYDLVS-GE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNG 473 (491)
Q Consensus 409 ~~~~l~~g~~d------g~i~iwd~~~-~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg--~i~iw~~~~~~ 473 (491)
++++.+.|+.+ ..+..||..+ .+ .+..+.........+.+ ++++.++||.|| .+..||..+++
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 56766777654 2467899876 33 34444433333344444 788899999898 67777776653
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.36 E-value=0.023 Score=56.43 Aligned_cols=191 Identities=16% Similarity=0.153 Sum_probs=105.5
Q ss_pred cCCCCEEEEEECC------CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-C-----eEEEEECCC
Q 011216 133 SADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-----IVHIVDVGS 200 (491)
Q Consensus 133 s~dg~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g-----~i~iwd~~~ 200 (491)
+..+.+++.||.+ ..+..||..++...... ... ....-.+++.. ++...++|+.| | .+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-PMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-CCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 4456677888776 36788898877222211 111 11122333433 55778888888 3 678889888
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe-----EEEEECCCCeeeEEEeccCCCeEEE
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
++......+...... ..+. . -+|...++|+.||. |-.||..+.+....-. ........
T Consensus 359 ~~W~~~a~M~~~R~~------------~~v~--~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~ 421 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSD------------FGVA--V--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGH 421 (571)
T ss_pred CceeccCCccCcccc------------ceeE--E--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeee
Confidence 876555444332111 1111 1 26778889988864 7788888776533221 11123333
Q ss_pred EEecCCCCEEEEEeCCC------eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCc-----EEEee
Q 011216 276 CFGDESGHLIYSGSDDN------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-----IKLWD 344 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~-----i~iwd 344 (491)
....-++.+.++|+.++ ++..||..+. ....+..+...........+ ++.+.+.|+.|+. +..||
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEc
Confidence 33334688888888665 4667776522 22222222222222222222 5777888887762 56677
Q ss_pred CCC
Q 011216 345 IRK 347 (491)
Q Consensus 345 ~~~ 347 (491)
..+
T Consensus 498 p~~ 500 (571)
T KOG4441|consen 498 PET 500 (571)
T ss_pred CCC
Confidence 665
No 378
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.36 E-value=0.00056 Score=39.72 Aligned_cols=37 Identities=41% Similarity=0.632 Sum_probs=32.5
Q ss_pred ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 011216 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 308 ~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd 344 (491)
+...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
No 379
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00084 Score=63.64 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=61.8
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCee-eeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 405 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
.|+|.-.++|.+..+|.|.+..+. ...+.++..|...++ +++|.|||+.||.|-.||+|++-|+..+...
T Consensus 27 ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 27 EWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred EEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 355567899999999999999987 888888887887888 9999999999999999999999999987644
No 380
>PHA02713 hypothetical protein; Provisional
Probab=97.32 E-value=0.017 Score=57.56 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=61.3
Q ss_pred eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC------CeEEEEECCCCccccccceecccccccccc
Q 011216 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 147 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.+..||..++.-.. .......... .+++ .-++...++|+.+ ..+..||..++.......++....
T Consensus 273 ~v~~yd~~~~~W~~-l~~mp~~r~~-~~~a-~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~------ 343 (557)
T PHA02713 273 CILVYNINTMEYSV-ISTIPNHIIN-YASA-IVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRC------ 343 (557)
T ss_pred CEEEEeCCCCeEEE-CCCCCccccc-eEEE-EECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhh------
Confidence 56778887763221 1111111111 1122 2367777777753 357788887776543333221110
Q ss_pred CCCCCceecEEEEEEcCCCCEEEEEecCC-----eEEEEECCCCeeeEE--EeccCCCeEEEEEecCCCCEEEEEeCC
Q 011216 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 221 ~~~~~h~~~v~~i~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~d 291 (491)
.. +++ .-+|+..+.|+.++ .+..||..+++.... +....... +++. -++.+.+.|+.+
T Consensus 344 --------~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 344 --------RF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCV--LDQYIYIIGGRT 408 (557)
T ss_pred --------ce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEE--ECCEEEEEeCCC
Confidence 11 122 22577778887654 488899887765331 11111111 2222 357777777765
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.0023 Score=59.55 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=96.6
Q ss_pred CCCE-EEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE-------EEEeeCCCcEEEeeCCCCCCcc
Q 011216 281 SGHL-IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-------LISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 281 ~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~-------l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
+.++ |.++.....++-.|+. .++.+..+.-+.. |+-+.+.|+.+. -+.|-.|..|.-||.|-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE----~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-- 416 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIE----RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-- 416 (644)
T ss_pred ccceEeeCCCCcCcceeeecc----cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--
Confidence 3344 4455556678888887 8888888887766 777788886532 24466788899999885221
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
..+....+|...... .|+..-.....+|++|+.+|.|++||--....
T Consensus 417 ------------------------------~kl~~~q~kqy~~k~---nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~A 463 (644)
T KOG2395|consen 417 ------------------------------NKLAVVQSKQYSTKN---NFSCFATTESGYIVVGSLKGDIRLYDRIGRRA 463 (644)
T ss_pred ------------------------------ceeeeeecccccccc---ccceeeecCCceEEEeecCCcEEeehhhhhhh
Confidence 122222222211111 11212222567899999999999999733333
Q ss_pred EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
...+.+-..+|..+..+.||++|+..+ +..+.+-++.-
T Consensus 464 KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 464 KTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred hhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 445678888999999999999877665 45666666543
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.26 E-value=0.0072 Score=61.00 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=92.9
Q ss_pred CCCCEEEEE-eCCCeEEEEeCccccCCCcceeeecccccc-EEEEEEcC-----CCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 280 ESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 280 ~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~~i~~sp-----~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
.+.++|+.- .....|+-.|+. .++.+..+..+... |..++-.. +...-+.|-.++.|..||.|-.....
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe----~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLE----RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred cccceEeecCCCCCceEEEecC----CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 344454443 355788889998 88999998877654 55543221 12234567778889999998532100
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
. ......+.... .|+..-+....+||+|+.+|.|++||--..+.
T Consensus 567 v----------------------------~~~~k~Y~~~~--------~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~A 610 (794)
T PF08553_consen 567 V----------------------------DSQSKQYSSKN--------NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRA 610 (794)
T ss_pred e----------------------------eccccccccCC--------CceEEEecCCceEEEEeCCCcEEeecccchhh
Confidence 0 00011111111 11111222456899999999999999533333
Q ss_pred EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 433 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
...|.+-..+|.+|..+.||++|+..+ +..+.+++..
T Consensus 611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 344567788999999999999887766 4567777753
No 383
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.016 Score=54.18 Aligned_cols=144 Identities=15% Similarity=0.234 Sum_probs=93.0
Q ss_pred CCceEEE-EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-------EEEEEecCCeE
Q 011216 180 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 251 (491)
Q Consensus 180 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-------~l~~~~~dg~i 251 (491)
+.++|+. +.....++-.|++.|+.+....+.. .|.-+.+.|+.+ .=+.|-.+..|
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~v 406 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLSDNSV 406 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeecCCce
Confidence 4444443 3444568888899998877666543 244455555432 12456667889
Q ss_pred EEEECCCCee--eEEEecc----CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 252 YVYDLEANKL--SLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 252 ~vwd~~~~~~--~~~~~~~----~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
.-||.+-... +....+| .....|.+- ....++++||.+|.|++||.- .......+.+...+|..|..+
T Consensus 407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdri----~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDRI----GRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred EEecccccCcceeeeeeccccccccccceeee--cCCceEEEeecCCcEEeehhh----hhhhhhcccccCCceeeEEee
Confidence 9999863222 1112222 234456655 345589999999999999973 334445567788899999999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCC
Q 011216 326 GDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.+|++|+..+ +..|.+.++.-
T Consensus 481 adGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 481 ADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred ccCcEEEEec-ccEEEEEEEec
Confidence 9999887554 55677776654
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.22 E-value=0.26 Score=48.74 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=87.7
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCC-ceeEEEeEeCCCCceEEEEe------cCCeEEEEECCCCccccccce
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 209 (491)
..++.++.|+.|.-.|..+|+.+-+....... ...+++--.--++. ++++. .+|.|.-+|.++|+.+-....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 46777888999999999999766543321110 01111100001343 44443 268999999999987655443
Q ss_pred eccccc----------cccc----cCCCCCc-eecE-EEEEEcCCCCEEEEEecC-----C-----------eEEEEECC
Q 011216 210 TEIHDG----------LDFS----AADDGGY-SFGI-FSLKFSTDGRELVAGSSD-----D-----------CIYVYDLE 257 (491)
Q Consensus 210 ~~~~~~----------~~~~----~~~~~~h-~~~v-~~i~~s~~~~~l~~~~~d-----g-----------~i~vwd~~ 257 (491)
...... .+.. ....-.+ ...+ ..+++.+...+++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 221100 0000 0000000 0111 134666666666665422 2 67788999
Q ss_pred CCeeeEEEeccCCCe---------EEEEEecCCCC---EEEEEeCCCeEEEEeCc
Q 011216 258 ANKLSLRILAHTSDV---------NTVCFGDESGH---LIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 258 ~~~~~~~~~~~~~~v---------~~i~~~~~~~~---~l~s~s~dg~i~iwd~~ 300 (491)
+++..-.+......+ .-+.+ +.+++ .++.+..+|.+.+.|.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~-~~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDL-KKDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEe-ccCCcEEEEEEEeCCCceEEEEECC
Confidence 998876665322221 12222 23554 78899999999999987
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.15 Score=44.57 Aligned_cols=162 Identities=9% Similarity=0.182 Sum_probs=105.7
Q ss_pred ceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC
Q 011216 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 169 ~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d 248 (491)
...+.++.|+|+.+.|++......-.|+=...|+.+....+...+ ....+.+..+|++.++--.+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~---------------DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------------DPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC---------------ChhHeEEecCCEEEEEehhc
Confidence 335999999999999999888887777777788887777665543 24467888888877777778
Q ss_pred CeEEEEECCCCeeeEEE-------e--cc-CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc---
Q 011216 249 DCIYVYDLEANKLSLRI-------L--AH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--- 315 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~-------~--~~-~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--- 315 (491)
+.+.++.+.....+... . .+ +...-.++|. +.++.|+.+-+-.-+.||...... ..-.......+
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~~-~~l~~~~~~~~~~~ 227 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQSP-SSLSVHASLDPTAD 227 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecCC-cccccccccCcccc
Confidence 88988887655322111 1 22 5567889997 555666666666666776654111 11111111111
Q ss_pred ----cccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCC
Q 011216 316 ----LEGITFIDSRGD-GRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 316 ----~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~ 347 (491)
-..|.++.|++. +..|+.+..++.+.-.|...
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 234667778764 55666677777777777664
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.13 E-value=0.39 Score=49.00 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=112.1
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC--------------CeEEEEECCCCccc
Q 011216 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHIVDVGSGTME 204 (491)
Q Consensus 139 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d--------------g~i~iwd~~~~~~~ 204 (491)
|+.+ ..+.+++.-++.-.++.... -........+++.+....+.+.+.- ..++++|-++-+..
T Consensus 687 l~~~-~~~~l~i~tid~iqkl~irt--vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 687 LASA-NGGALTIGTIDEIQKLHIRT--VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred EEEe-cCCceEEEEecchhhcceee--ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4444 34456666665432222211 1122256677777744444443321 13566666655554
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEec----------CCeEEEEECCCCeeeEEEec--cCCC
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS----------DDCIYVYDLEANKLSLRILA--HTSD 271 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~--~~~~ 271 (491)
.......... .-.+.++.|..| +.++++|.. .|.|.++....+..+..... -.+.
T Consensus 764 ~~hef~~~E~------------~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 764 SSHEFERNET------------ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred eeccccccce------------eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 4443332221 115666778887 678888763 57888888877444333322 2455
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+.++.. -+++++| +-...|++|+.. ..+.++.-..+..++..+...-.|..+++|.--+.+.+.-.+.
T Consensus 832 v~aL~~--fngkllA--~In~~vrLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 832 VYALVE--FNGKLLA--GINQSVRLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred eeehhh--hCCeEEE--ecCcEEEEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 666554 3566654 455689999986 5556766777888999999988899999998888877766655
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.12 E-value=0.25 Score=46.57 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred ecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEec----C---------------C-CC-eEEEEEC
Q 011216 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH----P---------------S-QP-MLVSSSW 460 (491)
Q Consensus 402 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s----~---------------~-~~-~l~s~~~ 460 (491)
.+...+|++++.|+...-|.|.++|+.++..+..+++-.+. .+.|- + . .. +++-+-.
T Consensus 311 ~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 311 ESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 44567789999999877899999999999887777654321 11110 0 0 11 3344567
Q ss_pred CCcEEEecCCCCCCC
Q 011216 461 DGDVVRWEFPGNGEA 475 (491)
Q Consensus 461 Dg~i~iw~~~~~~~~ 475 (491)
-|.|-||.+..+.+.
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 899999999887654
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.21 Score=45.32 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=104.8
Q ss_pred EEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccce
Q 011216 131 QFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 131 ~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (491)
.|.++...|+ +--..+.|.-|+..++.... ..... .+.++..-..+..|+++. .-+.+++.+++........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--~~~p~---~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--FPSPG---GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--EECCC---CcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 5667776444 44467888899887662222 12222 244444433444455443 3366777665554211111
Q ss_pred eccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-----------CCeEEEEECCCCeeeEEEeccCCCeEEEEEe
Q 011216 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (491)
. ..+. -....+.+...|+|.+.+.... -|.|+.+|. .+..++.+..+-..-+.|+|+
T Consensus 104 ~--~~~~---------~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~S 171 (307)
T COG3386 104 P--EDGL---------PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFS 171 (307)
T ss_pred c--cCCC---------CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEEC
Confidence 1 1110 1125667788889875554332 133555554 455555555556667899998
Q ss_pred cCCCCEEEEEe-CCCeEEEEeCcc--ccCCCcc-eeeeccccccEEEEEEcCCCCEEEEeeCCC-cEEEeeCC
Q 011216 279 DESGHLIYSGS-DDNLCKVWDRRC--LNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIR 346 (491)
Q Consensus 279 ~~~~~~l~s~s-~dg~i~iwd~~~--~~~~~~~-~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-~i~iwd~~ 346 (491)
++++.|+.+. ..+.|.-|++.. ....... ........+..-.++...+|.+.+++..+| .|.+|+..
T Consensus 172 -pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 172 -PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred -CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 6665555554 457888887751 1111111 112222334445666777777765544444 78888876
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.09 E-value=0.18 Score=44.53 Aligned_cols=147 Identities=20% Similarity=0.178 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE-CCCC
Q 011216 126 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd-~~~~ 201 (491)
.+...++|+||+.+|... ....++++..... ..... .. ..+....|++++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688999999999887765 3445666655443 22222 11 1678889999988777766666666664 2333
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe---cCCeEEEEECC---CC--e----eeEEEeccC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLE---AN--K----LSLRILAHT 269 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~---~dg~i~vwd~~---~~--~----~~~~~~~~~ 269 (491)
...... .. .... ...|..+++||||..++... .++.|.+--+. .+ . .........
T Consensus 99 ~~~~~~-v~---------~~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 99 TGEPVE-VD---------WPGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred cceeEE-ec---------cccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 221111 00 0000 01699999999999888766 35777776553 22 0 111111335
Q ss_pred CCeEEEEEecCCCCEEEEEeCCC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg 292 (491)
..+..+.|. .+..+++.+...+
T Consensus 166 ~~v~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 166 SDVTDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred Ccceeeeec-CCCEEEEEeCCCC
Confidence 688999998 6666666555443
No 390
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.17 Score=43.94 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=69.8
Q ss_pred EEEEEEcCCC-CEEEEEecCCe-EEEEECCCCeeeEEEeccCCC--eEEEEEecCCCCEEEEEeCC-----CeEEEEeCc
Q 011216 230 IFSLKFSTDG-RELVAGSSDDC-IYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD-----NLCKVWDRR 300 (491)
Q Consensus 230 v~~i~~s~~~-~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~s~s~d-----g~i~iwd~~ 300 (491)
...++|+|.- .-++.+-.-|+ ..++|....+....+...++. --.=.|+ +++.+|+..-.| |.|-|||.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecc
Confidence 4457788744 44555655554 668888887766554322221 1223677 889999877554 789999987
Q ss_pred cccCCCcceeeeccccccEEEEEEcCCCCEEEEee
Q 011216 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~ 335 (491)
.....+..+..|.-....+.|.+||+.++.+.
T Consensus 149 ---~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 149 ---EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ---cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 24456677778887888999999999988763
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.06 E-value=0.0026 Score=38.89 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=28.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~ 154 (491)
...|.+++|+|...+||.|..+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4679999999999999999999999999983
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.04 E-value=0.058 Score=45.18 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=94.2
Q ss_pred CCceEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCe
Q 011216 124 TSRAYVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPI 192 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~ 192 (491)
..+.+.-..+|+|++.+ |.. .|.++.|-.... +.... ..-+--+.++|+.+.+.+..- +.+-+
T Consensus 108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~--v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ--VELIW---NCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCceee-eeeccccccccccccEEEEeccCCC--ceeee---hhccCCccccccccCcEEEEEccCceE
Confidence 55667778899999844 322 355666665432 11111 111123568898887766554 45567
Q ss_pred EEEEE--CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 193 VHIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 193 i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
|.-|| ..+|.......+........+... ..-.++...+|.+.++.-..++|...|..+++.+.++.-...
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC
Confidence 87787 666665433332222211111111 112244466888888888899999999999999999988899
Q ss_pred CeEEEEEecCCCCEEEEE
Q 011216 271 DVNTVCFGDESGHLIYSG 288 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~ 288 (491)
.|+|++|--++-.++++.
T Consensus 255 qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYVT 272 (310)
T ss_pred ceEEEEecCCCccEEEEE
Confidence 999999975544455544
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.02 E-value=0.16 Score=42.64 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=38.5
Q ss_pred cCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecC
Q 011216 407 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 407 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 450 (491)
..+|++.++.-..++|...|..+|+.+..++-....|++++|--
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 34688888888889999999999999999988888999999953
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.01 E-value=0.094 Score=50.18 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=88.8
Q ss_pred ccCCCCceEEEEEcCCCCEEE-EEE--CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC----ceEEEEecCCe
Q 011216 120 VDQTTSRAYVSQFSADGSLFV-AGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ----RHLVYASMSPI 192 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l~-~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~----~~l~~~~~dg~ 192 (491)
++..-.+|..++|. ||+.++ +.- .+|.+++=|-. .+.+ -. .|..+.|.|-+ ..|++.-....
T Consensus 15 L~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGq----FE---hV~GlsW~P~~~~~~paLLAVQHkkh 83 (671)
T PF15390_consen 15 LHQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQ----FE---HVHGLSWAPPCTADTPALLAVQHKKH 83 (671)
T ss_pred HHhhhccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeec----cc---eeeeeeecCcccCCCCceEEEeccce
Confidence 34445678889998 666544 332 23433332211 1111 12 48999999953 35666667789
Q ss_pred EEEEECCCCccc--cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe--eeEEEecc
Q 011216 193 VHIVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAH 268 (491)
Q Consensus 193 i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~ 268 (491)
|.||.+...... .........-+..|+. -...+.|+|....|++-.....-.++++.... ....+ ..
T Consensus 84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pv--------LpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~ 154 (671)
T PF15390_consen 84 VTVWQLCPSTTERNKLLMSQTCEIREPFPV--------LPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KT 154 (671)
T ss_pred EEEEEeccCccccccceeeeeeeccCCccc--------CCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cC
Confidence 999998632211 1111111111111111 12457899998888776665544556654332 22223 56
Q ss_pred CCCeEEEEEecCCCCEEE-EEeCCCeEEEEeCc
Q 011216 269 TSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRR 300 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~-s~s~dg~i~iwd~~ 300 (491)
.+.|.|.+|. .||+.|+ +.+..=.-++||-.
T Consensus 155 ~G~IhCACWT-~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 SGLIHCACWT-KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceEEEEEec-CcCCEEEEEeCCeEEEEEecCc
Confidence 7889999998 5665554 44554567899854
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.034 Score=56.69 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.+..++.|+..|.+...|+...-. .... ...-.++|++++|+.+|+.++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~-~~~~--------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG-PLHQ--------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc-hhhc--------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 455678888888888887765311 0000 0112348999999999999999999999999999999
Q ss_pred eeeEEEeccCCCeEEEEEec--CCCCEEEEEeCCCeEEEEeC
Q 011216 260 KLSLRILAHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~--~~~~~l~s~s~dg~i~iwd~ 299 (491)
+..+.+..|..+.+.+-+.. .++..++++...|. +|.+
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99888887776666554431 34557888877776 5654
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.0028 Score=52.63 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=72.4
Q ss_pred CCEEEEEecCCeEEEEECCCCe-eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc-
Q 011216 239 GRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL- 316 (491)
Q Consensus 239 ~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~- 316 (491)
+..+++|+.+|.|++|...... .......-...|-++--.-.++.+..++..||.|+.|++. ..+.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeeccccC
Confidence 4569999999999999886221 1111112233444443333455689999999999999997 667776666676
Q ss_pred ccEEEEEEcCCCCEEEEe--eCCCcEEEeeCCCC
Q 011216 317 EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKM 348 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~~~--~~dg~i~iwd~~~~ 348 (491)
.++.....+..++.++.. +.|..++.|++...
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 566666666667777777 77888888887763
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.97 E-value=0.24 Score=46.12 Aligned_cols=203 Identities=13% Similarity=0.016 Sum_probs=93.3
Q ss_pred CCCEEEEEE-CCCeEEEEECCCC---eEEEEEeecc-----CCceeEEEeEeCCCCceEEEEe--cC----CeEEEEECC
Q 011216 135 DGSLFVAGF-QASQIRIYDVERG---WKIQKDILAK-----SLRWTVTDTSLSPDQRHLVYAS--MS----PIVHIVDVG 199 (491)
Q Consensus 135 dg~~l~~~~-~dg~i~vw~~~~~---~~~~~~~~~~-----~~~~~v~~l~~sp~~~~l~~~~--~d----g~i~iwd~~ 199 (491)
+.++|+..+ ..+.|.|.|+.+. -.+.+.+... .--.....+---|+|+.++++- .+ |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 6789999999853 2333333321 0111233344457898888753 22 467888877
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe--------------------cCCeEEEEECCCC
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN 259 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~--------------------~dg~i~vwd~~~~ 259 (491)
+.+.......... ...--+.+-|.|..+.+++.. ...++.+||+.+.
T Consensus 166 tf~v~g~We~~~~-------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRG-------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-T-------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCC-------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 6655444432221 112456778888877777754 2357999999999
Q ss_pred eeeEEEeccC--CCeEEEEEe-cCCCC-EEEEEeCCCeEEEEeC-ccccCCCcceeeec-----------------cccc
Q 011216 260 KLSLRILAHT--SDVNTVCFG-DESGH-LIYSGSDDNLCKVWDR-RCLNVKGKPAGVLM-----------------GHLE 317 (491)
Q Consensus 260 ~~~~~~~~~~--~~v~~i~~~-~~~~~-~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~-----------------~~~~ 317 (491)
+.++++.--. .....+.|. .|+.. -++.+....+|..|-. ....-..+.+..+. .-..
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 9988886332 234566665 12233 3444444445554432 10000001111111 1134
Q ss_pred cEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCC
Q 011216 318 GITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSS 350 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~ 350 (491)
-|+.|..|.|.++|..+. ..|.|+.||+.....
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 578999999999987655 589999999988544
No 398
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.92 E-value=0.079 Score=52.81 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=61.4
Q ss_pred cEEEEEEcCCCCEEEEEe------cCC--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCC---------
Q 011216 229 GIFSLKFSTDGRELVAGS------SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD--------- 291 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d--------- 291 (491)
.+.+.+++|+|+.++... .|+ .|++++.... . ..+..- ...+.-.|+ +++..|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~g-~~~t~PsWs-pDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLEG-HSLTRPSWS-LDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeecC-CCCCCceEC-CCCCceEEEecCcceEEEecc
Confidence 577889999999887765 233 5666665322 2 333222 237888998 676666666433
Q ss_pred ---CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEE
Q 011216 292 ---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 342 (491)
Q Consensus 292 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~i 342 (491)
+.+.+.++. .+.... .....|..+.|||||..++... ++.|.+
T Consensus 427 ~~~gql~~~~vd----~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVD----ASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEecc----Cchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 222222332 111111 2345799999999999988765 466666
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.009 Score=60.61 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=74.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
-+-.++.|++.|.+...|+... +..........++|++++|+.+|+.++.|-.+|.|.+||+..++...........
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap- 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP- 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-
Confidence 4567899999999999888764 2223334455679999999999999999999999999999988765554322111
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
+. .+..+.+..++..++++...|. +|.+
T Consensus 175 -----------~t-~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 175 -----------VT-GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -----------cc-eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 22 3444555556667888887776 5544
No 400
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.79 E-value=0.37 Score=43.33 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccc
Q 011216 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (491)
Q Consensus 134 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 213 (491)
..++.|+.|+.+| |.+++.............. .|..+...|+-+.|++-+ |+.+.++++..-............
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----eEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899999998 8999984332222222221 499999999887777665 599999998765443321100000
Q ss_pred cccccccCCCCCceecEEEEE--EcCCCCEEEEEecCCeEEEEECCCC-----eeeEEEeccCCCeEEEEEecCCCCEEE
Q 011216 214 DGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 214 ~~~~~~~~~~~~h~~~v~~i~--~s~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (491)
...... ........+...+ -...+...++......|.+|..... +..+.+ .-...+.+++|. ++.++
T Consensus 79 ~~~~~~--~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~ 152 (275)
T PF00780_consen 79 KSRSLP--TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKIC 152 (275)
T ss_pred cccccc--ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEEE
Confidence 000000 0000111343334 1123333333444558888887653 233444 445788999997 55677
Q ss_pred EEeCCCeEEEEeCc
Q 011216 287 SGSDDNLCKVWDRR 300 (491)
Q Consensus 287 s~s~dg~i~iwd~~ 300 (491)
.|..+ ...+.|+.
T Consensus 153 v~~~~-~f~~idl~ 165 (275)
T PF00780_consen 153 VGTSK-GFYLIDLN 165 (275)
T ss_pred EEeCC-ceEEEecC
Confidence 77654 46778886
No 401
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.73 E-value=0.12 Score=49.40 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=70.3
Q ss_pred cEEEEEEcCC----CCEEEEEecCCeEEEEECC-----CCeeeEEEeccC---C--CeEEEEEecCCCCEEEEEeCCCeE
Q 011216 229 GIFSLKFSTD----GRELVAGSSDDCIYVYDLE-----ANKLSLRILAHT---S--DVNTVCFGDESGHLIYSGSDDNLC 294 (491)
Q Consensus 229 ~v~~i~~s~~----~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~---~--~v~~i~~~~~~~~~l~s~s~dg~i 294 (491)
.|..+.|.|- -..|++......|.||.+. +++.+.....+- - --..+.|+ |....|+.-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence 5889999984 3356666677889999885 233332222111 1 12457788 556666665555444
Q ss_pred EEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-CcEEEeeCCC
Q 011216 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-QAIKLWDIRK 347 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-g~i~iwd~~~ 347 (491)
.+++++.. .......+ .-.+.|.|.+|.+||+.|+++-.. =.-++||-..
T Consensus 137 V~~sV~~d--~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 137 VLPSVHCD--SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeeeeeeC--CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 56676632 22222233 445789999999999988766433 3467888544
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.68 E-value=0.0081 Score=36.71 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=27.4
Q ss_pred ecEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 011216 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 228 ~~v~~i~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
..|.+++|+|...+||.++.+|.|.++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 37999999999999999999999999998
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.54 E-value=0.47 Score=41.35 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCEEEEEecCC--eEEEEECCCCeeeEEEec-cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC
Q 011216 230 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 230 v~~i~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
...+.|..+|.++-+.+.-| .|+.+|+.+++......- ..-.--.++.. ++++..-.-.++...+||.. ..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~----tl 120 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPN----TL 120 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETT----TT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccc----cc
Confidence 55678877888777777766 699999999987655432 22333456654 34555566678899999987 55
Q ss_pred cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeE
Q 011216 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
+.+..+.-. ..=..++ .|++.|+.......|.++|..+..... .+.
T Consensus 121 ~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~-------------------------------~i~ 166 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR-------------------------------TIQ 166 (264)
T ss_dssp EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE-------------------------------EEE
T ss_pred eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEE-------------------------------EEE
Confidence 556555432 3445666 366777777777789999988754321 112
Q ss_pred EEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC------------C---CCCeeeeEecCC
Q 011216 387 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY------------H---TSPVRDCSWHPS 451 (491)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~~~~s~~ 451 (491)
..........+...-+- +|.+.|-.-....|...|..+|+.+..+.. + ..-.+.+||.|.
T Consensus 167 V~~~g~pv~~LNELE~i-----~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYI-----NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp -EETTEE---EEEEEEE-----TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEECCEECCCcEeEEEE-----cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 22222222222222221 577777777777899999999998876531 1 234789999988
Q ss_pred CCeEEEEE
Q 011216 452 QPMLVSSS 459 (491)
Q Consensus 452 ~~~l~s~~ 459 (491)
...|...|
T Consensus 242 ~~~l~vTG 249 (264)
T PF05096_consen 242 TDRLFVTG 249 (264)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEe
Confidence 77555544
No 404
>PRK10115 protease 2; Provisional
Probab=96.54 E-value=1.2 Score=45.87 Aligned_cols=197 Identities=11% Similarity=0.047 Sum_probs=99.3
Q ss_pred CceEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC------CeE
Q 011216 125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d------g~i 193 (491)
-.+..+.+||||++|+.+.+ ...|++.|+.++..+...+ .. .-..++|++|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DN---VEPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cC---cceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 44667899999999987643 3368899998874332221 11 12458999999877776543 367
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECC--CCeeeEEEecc
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLE--ANKLSLRILAH 268 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~--~~~~~~~~~~~ 268 (491)
..+++.++......-..+.. .... ..+..+.++++++..+. ++.+.+++.. .+.....+ .+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~------------~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 267 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKD------------DTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PR 267 (686)
T ss_pred EEEECCCChhHCeEEEeeCC------------CCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-EC
Confidence 88888877322211111100 0011 13334558887665544 3568888853 33322222 22
Q ss_pred CCCe-EEEEEecCCCCEEEEEeCC-CeEEEEeCccccCCCcceeeeccc-c-ccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 011216 269 TSDV-NTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGH-L-EGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 269 ~~~v-~~i~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~~-~-~~i~~i~~sp~~~~l~~~~~dg~i~iwd 344 (491)
...+ ..+. + ..+.+++....+ ...+|..+.-.. ... ...+..+ . ..+..+.+.. +.++++...++.-+++-
T Consensus 268 ~~~~~~~~~-~-~~~~ly~~tn~~~~~~~l~~~~~~~-~~~-~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 268 RKDHEYSLD-H-YQHRFYLRSNRHGKNFGLYRTRVRD-EQQ-WEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQ 342 (686)
T ss_pred CCCCEEEEE-e-CCCEEEEEEcCCCCCceEEEecCCC-ccc-CeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEE
Confidence 2222 2222 2 233333333222 233343332110 111 2233334 2 3677777773 34455555566655543
Q ss_pred C
Q 011216 345 I 345 (491)
Q Consensus 345 ~ 345 (491)
+
T Consensus 343 ~ 343 (686)
T PRK10115 343 I 343 (686)
T ss_pred E
Confidence 3
No 405
>PHA03098 kelch-like protein; Provisional
Probab=96.49 E-value=0.16 Score=50.84 Aligned_cols=189 Identities=12% Similarity=0.063 Sum_probs=92.8
Q ss_pred CCCCEEEEEECCC------eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-----CeEEEEECCCCc
Q 011216 134 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 202 (491)
Q Consensus 134 ~dg~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-----g~i~iwd~~~~~ 202 (491)
.++.+++.||.++ .+..||..++.- .........+.....+. -+++..+.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW-NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCee-eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556777776542 577888877633 22211111111122222 267777788765 357788887776
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC------CeEEEEECCCCeeeEEEecc-CCCeEEE
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILAH-TSDVNTV 275 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~i 275 (491)
.......+.. ..+| +++ .-+++.++.|+.+ ..+..||..+++....-... ...-.++
T Consensus 370 W~~~~~lp~~----------r~~~-----~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 433 (534)
T PHA03098 370 WREEPPLIFP----------RYNP-----CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA 433 (534)
T ss_pred eeeCCCcCcC----------Cccc-----eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE
Confidence 5443322211 0111 111 1256677777632 45889999877653321100 1111223
Q ss_pred EEecCCCCEEEEEeCCC--------eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-----CcEEE
Q 011216 276 CFGDESGHLIYSGSDDN--------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKL 342 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-----g~i~i 342 (491)
+. .++.+++.|+.+. .+.+||.... ....+..+.........+.+ +++.++.|+.+ +.+.+
T Consensus 434 ~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 507 (534)
T PHA03098 434 IY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEV 507 (534)
T ss_pred EE--ECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEE
Confidence 33 3456777776432 3778887522 11112111111111122222 56677777654 35777
Q ss_pred eeCCC
Q 011216 343 WDIRK 347 (491)
Q Consensus 343 wd~~~ 347 (491)
||..+
T Consensus 508 yd~~~ 512 (534)
T PHA03098 508 YDDKT 512 (534)
T ss_pred EeCCC
Confidence 87765
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.39 E-value=0.92 Score=42.96 Aligned_cols=152 Identities=11% Similarity=0.078 Sum_probs=88.5
Q ss_pred CCEEEEEECCCeEEEEECCCCe-EEEEEeeccCCceeEEEeEeCC----CCceEEEEecCCeEEEEECCCCccc----cc
Q 011216 136 GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP----DQRHLVYASMSPIVHIVDVGSGTME----SL 206 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~sp----~~~~l~~~~~dg~i~iwd~~~~~~~----~~ 206 (491)
...+++|+..|.++||+...+. .....+.....+.+|..+..-+ .....++.-.-..+.||.+....-. ..
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 3589999999999999986542 2222333344555888887532 2233333355677888887221110 00
Q ss_pred cceeccccccccccCCCCCce--ecEEEEEEcC----C-CCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEec
Q 011216 207 ANVTEIHDGLDFSAADDGGYS--FGIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~--~~v~~i~~s~----~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (491)
..+... ..|. .....+++-| . ..++.+=+.||.+.+++-+.-...+.+.. ---...++|.
T Consensus 117 ~~L~~~-----------yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~- 183 (418)
T PF14727_consen 117 YQLELI-----------YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYC- 183 (418)
T ss_pred EEEEEE-----------EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEe-
Confidence 000000 0011 1233333333 2 25677788999999999776554444433 3334567887
Q ss_pred CCCCEEEEEeCCCeEEEEeCc
Q 011216 280 ESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~ 300 (491)
+..+.|++++.+..+.-|...
T Consensus 184 ~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 184 PRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ecCCEEEEecCceeEEEecHH
Confidence 566788899998899888764
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.23 E-value=0.73 Score=40.21 Aligned_cols=183 Identities=17% Similarity=0.134 Sum_probs=105.0
Q ss_pred ceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 126 RAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
-.-.+.|..+|.++-+.+.-| .|+.+|+.+++...........- --.++.. +++.....-.++...+||..+-+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF--GEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc--ceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 344678877888878777655 79999999997665544333221 1223332 334444455788999999987665
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc-----CCCeEEEEEe
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFG 278 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~v~~i~~~ 278 (491)
...+.... .=..++ .|++.|+.......++++|..+.+....+.-. -..++-+.|.
T Consensus 123 ~~~~~y~~-----------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 123 IGTFPYPG-----------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEEEE-SS-----------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEEEecCC-----------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 54443221 233444 46777888777888999999887766655421 2346667774
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec---------------cccccEEEEEEcCCCCEEEEeeC
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---------------GHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---------------~~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
++.+.|=.-....|...|.. ++..+..+. ....-.+.|++.|....|...+.
T Consensus 184 --~G~IyANVW~td~I~~Idp~----tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 --NGKIYANVWQTDRIVRIDPE----TGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp --TTEEEEEETTSSEEEEEETT----T-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred --cCEEEEEeCCCCeEEEEeCC----CCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 45555544455555555654 443333221 11345789999987766655543
No 408
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.23 E-value=0.71 Score=43.72 Aligned_cols=164 Identities=12% Similarity=0.116 Sum_probs=95.0
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-----CCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-----DGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+...|++|+..|.++||+..........+..-..-..+|..+..-+ +...||+ =.-..+.+|.+........
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~-- 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE-- 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc--
Confidence 4568999999999999998533222222222223456788777532 2234554 3456788888743221100
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC-CcEEEEEecCCeEEEEECCCccEEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
+...-.+.....|.........+..+.-... ..+|.+-+.||.+.+|+-+.-....
T Consensus 113 -----------------------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~ 169 (418)
T PF14727_consen 113 -----------------------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR 169 (418)
T ss_pred -----------------------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE
Confidence 0001223333334333333333333322223 4688889999999999976544333
Q ss_pred EecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
.+.. ---..-+++.+.-..|++++.+..|.-|++..
T Consensus 170 ~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 170 FLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred EcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 4432 22223468888888999999999999998743
No 409
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.21 E-value=1.7 Score=44.90 Aligned_cols=226 Identities=15% Similarity=0.130 Sum_probs=112.2
Q ss_pred CCEEEEEecCCeEEEEECCCCeeeEEEeccCC--------CeEEEEEec---------------CCCCEEEEEeCCCeEE
Q 011216 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--------DVNTVCFGD---------------ESGHLIYSGSDDNLCK 295 (491)
Q Consensus 239 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--------~v~~i~~~~---------------~~~~~l~s~s~dg~i~ 295 (491)
+..|+.++.++.|.-.|..+++.+-++..... ..+.+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44677778888999999999987766643211 112333321 1244788889999999
Q ss_pred EEeCccccCCCcceeeeccccccE-------------EEEEEcC--CCCEEEEeeC----------CCcEEEeeCCCCCC
Q 011216 296 VWDRRCLNVKGKPAGVLMGHLEGI-------------TFIDSRG--DGRYLISNGK----------DQAIKLWDIRKMSS 350 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i-------------~~i~~sp--~~~~l~~~~~----------dg~i~iwd~~~~~~ 350 (491)
-.|.+ +++.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|+++++.
T Consensus 274 ALDA~----TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDAD----TGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECC----CCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 99987 6666654421 1111 1111122 1334555542 67899999999776
Q ss_pred ccccccCcccceeeceeecCCCCcccccCCCCC--eeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ--SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
............ . .............. ....+........+-...-.|.+-...+.....-..+.|.-.|.+
T Consensus 349 ~W~~~~g~p~~~----~--~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~ 422 (764)
T TIGR03074 349 VWAWDPGNPDPT----A--PPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDAT 422 (764)
T ss_pred eeEEecCCCCcc----c--CCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCC
Confidence 544432110000 0 00000000000000 011111111100000000001110000101111124568889999
Q ss_pred CccEEEEecCCCCCeee---------eEecC-CCC---eEEEEECCCcEEEecCCCCCCC
Q 011216 429 SGEQVAALKYHTSPVRD---------CSWHP-SQP---MLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~---------~~~s~-~~~---~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
+|+.+..++.....+.+ +.+.. +|+ .++.++.+|.+++.|-.+++..
T Consensus 423 TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 423 TGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred CCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 99998887642211111 22222 553 7889999999999999887644
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.19 E-value=1.1 Score=41.93 Aligned_cols=186 Identities=13% Similarity=0.122 Sum_probs=83.6
Q ss_pred cCCCCEEEEEEC------CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe------------------
Q 011216 133 SADGSLFVAGFQ------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------------------ 188 (491)
Q Consensus 133 s~dg~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~------------------ 188 (491)
-|+|+.++++-. -|.+.+.|-++-+.............--.++-|.|..+.+++..
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 458888887532 34677888776544443333223333456777888888777753
Q ss_pred --cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEE-ecCCeEEEEEC-CCCee-
Q 011216 189 --MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAG-SSDDCIYVYDL-EANKL- 261 (491)
Q Consensus 189 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~-~~dg~i~vwd~-~~~~~- 261 (491)
+..++++||+.+.+.++.+.+.+.. ..+..++|..+ ..+=+++ .-..+|..|-- +.++.
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g--------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~ 283 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEG--------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA 283 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTE--------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCC--------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee
Confidence 2358999999999887776655321 14566777643 3333333 23445555543 33332
Q ss_pred ---eEEEec-----------------cCCCeEEEEEecCCCCEEEE-EeCCCeEEEEeCccccCCCcceeee-cc-----
Q 011216 262 ---SLRILA-----------------HTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVKGKPAGVL-MG----- 314 (491)
Q Consensus 262 ---~~~~~~-----------------~~~~v~~i~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~-~~----- 314 (491)
+..+.. -..-|+.|..| .++++|+. +-.+|.|+.||+.... ..+.+... .+
T Consensus 284 a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP~-~Pkl~gqv~lGG~~~~ 361 (461)
T PF05694_consen 284 AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDPF-NPKLVGQVFLGGSIRK 361 (461)
T ss_dssp EEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SSTT-S-EEEEEEE-BTTTT-
T ss_pred eeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCCC-CCcEEeEEEECcEecc
Confidence 111211 13457899998 56666654 4578999999997332 22222211 11
Q ss_pred ----------ccccEEEEEEcCCCCEEEEe
Q 011216 315 ----------HLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 315 ----------~~~~i~~i~~sp~~~~l~~~ 334 (491)
-.+...-|..|-||+.|...
T Consensus 362 ~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 362 GDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp B--TTS------S----EEE-TTSSEEEEE
T ss_pred CCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 11233567777788777654
No 411
>PHA03098 kelch-like protein; Provisional
Probab=95.94 E-value=0.69 Score=46.29 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=33.3
Q ss_pred CCCEEEEEecCC------eEEEEECCCCeeeEEEecc--CCCeEEEEEecCCCCEEEEEeCCC-----eEEEEeCc
Q 011216 238 DGRELVAGSSDD------CIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRR 300 (491)
Q Consensus 238 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~s~s~dg-----~i~iwd~~ 300 (491)
++..++.|+.++ .+..||..+++... +... ...-.+++. .++.+++.|+.++ .+..||..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence 455667776532 57889988776532 2111 111122222 3567778887652 46677765
No 412
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=1.2 Score=39.17 Aligned_cols=198 Identities=13% Similarity=0.033 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
.+-+..+.++. ++...+..+.-++|.|+.+............ .+--.+ |.-.|++..++..+.-+.+.|+.+.+.
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyayg--v~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEE--EEecCCEEEEeeccCcEEEEECCCCCC
Confidence 44556667764 4566666677799999987644443322222 112333 344688888888777788889877654
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe--ccCCCeEEEEEecCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDES 281 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~ 281 (491)
..+...-.... .....++.| |++-..+..|+-+.+.|+.......-+. .....+.++..+ ++
T Consensus 161 P~lagrya~~~-------------~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vs-dn 224 (370)
T COG5276 161 PQLAGRYALPG-------------GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVS-DN 224 (370)
T ss_pred ceeeeeeccCC-------------CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEec-CC
Confidence 33322211111 022345555 6777777788889999997765432221 222367777765 33
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceeeecc-ccccEEEE-EEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFI-DSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~i-~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
..++ +. .+--+.+-|.. ..+....+-. ....+.++ .+.-.+++......+.-+.+-|+.+.
T Consensus 225 r~y~-vv-y~egvlivd~s----~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 225 RAYL-VV-YDEGVLIVDVS----GPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eeEE-EE-cccceEEEecC----CCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 3333 33 33345566664 2221111111 11222222 12223556666666667777777763
No 413
>PRK10115 protease 2; Provisional
Probab=95.80 E-value=2.8 Score=43.23 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=68.7
Q ss_pred eeEEEeEeCCCCceEEEEecC-----CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE
Q 011216 170 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~ 244 (491)
..+..+.|+||+++|+.+... ..|++.|+.++...... + .+ .-..++|.+|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i----~~-------------~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-L----DN-------------VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-c----cC-------------cceEEEEeeCCCEEEE
Confidence 467788999999998886433 36889999877532110 0 00 1145899999987766
Q ss_pred EecC------CeEEEEECCCC--eeeEEEeccCCCeEEEEEecCCCCEEEEEeC---CCeEEEEeCc
Q 011216 245 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRR 300 (491)
Q Consensus 245 ~~~d------g~i~vwd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~---dg~i~iwd~~ 300 (491)
...+ ..|+.+++.++ +....+........-..+.+.++++++..+. ++.+.+++..
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 5442 36888999887 3333343333333322333346666554443 3568888854
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=95.76 E-value=1.7 Score=40.37 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=86.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEE-EECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~v-w~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
...++++.+.|++.+++++. .|.+.. ++ ..+....... ......++++.+.++++.++++ ..|.+.+=..+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 56789999999988776664 454432 22 2222222221 2333478999999999876665 46766433344443
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe---ccCCCeEEEEEec
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGD 279 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~i~~~~ 279 (491)
.-.....+.. .-...+.++.+.+++..+ +++.+|.|. .....++.-.... .-......+.|.
T Consensus 247 sW~~~~~~~~------------~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~- 311 (334)
T PRK13684 247 SWSKPIIPEI------------TNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL- 311 (334)
T ss_pred ccccccCCcc------------ccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe-
Confidence 3221111100 011257889999987754 455677554 4445444333322 222357788886
Q ss_pred CCCCEEEEEeCCCeEEEEeC
Q 011216 280 ESGHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~ 299 (491)
.+++. +..+..|.|.-|+-
T Consensus 312 ~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 312 DPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred CCCce-EEECCCceEEEecC
Confidence 44444 45667788877763
No 415
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.24 Score=45.85 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=70.7
Q ss_pred CCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe
Q 011216 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 167 ~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~ 246 (491)
..+++|.++.||+|.+.|++--.+.+|.+++....+........... .+..|....|+.+ ..+|.-.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~------------k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKT------------KNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhcc------------CcceeEEEEEecC-eeEEEEe
Confidence 44558999999999999999999999999998544432222211111 1125888999866 5577776
Q ss_pred cCCeEEEEECCCCe-eeEEEeccCCCeEEEEEecCCCCEEE
Q 011216 247 SDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 247 ~dg~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (491)
..| +-+|.....+ .++....|+..|+-..|+ ++.+.++
T Consensus 131 ~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~L 169 (657)
T KOG2377|consen 131 DQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVIL 169 (657)
T ss_pred cCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceEe
Confidence 666 6777654432 344455788889999998 4444433
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.63 E-value=1.6 Score=39.38 Aligned_cols=189 Identities=14% Similarity=0.094 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC-CCccc
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTME 204 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~-~~~~~ 204 (491)
..+++.|..+ ..+++| ..+ +.+...+.|....+........+....+....++..+++ +..|. ||... .|+.-
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~--iy~T~DgG~tW 136 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGA--IYRTTDGGKTW 136 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT----EEEESSTTSSE
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCc--EEEeCCCCCCe
Confidence 4667888643 344444 455 445555556444443322222223334444344443333 34443 33332 22211
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCE
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 284 (491)
.. ... .-...+..+.-++||++++++..-....-||-........-+.-...|..|.|. +++.+
T Consensus 137 ~~-~~~--------------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~-~~~~l 200 (302)
T PF14870_consen 137 QA-VVS--------------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFS-PDGNL 200 (302)
T ss_dssp EE-EE---------------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE--TTS-E
T ss_pred eE-ccc--------------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceec-CCCCE
Confidence 11 111 112368888889999988888666666678765543433344556889999998 66666
Q ss_pred EEEEeCCCeEEEEeCc-cccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC
Q 011216 285 IYSGSDDNLCKVWDRR-CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 285 l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d 337 (491)
.+. ...|.|+.=+.. ....-.+.+..+..-.-.+..++|.+++...++|+..
T Consensus 201 w~~-~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 201 WML-ARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEE-ETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred EEE-eCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 554 488888887721 0000011111111223347899999988777766543
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.60 E-value=1.5 Score=38.77 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=87.6
Q ss_pred eEEEeEeCCCCceEEEEe---cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 171 TVTDTSLSPDQRHLVYAS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
.+...+++++++.++... ....+.++.......... . + ..+..-.|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~----------------g--~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-T----------------G--GSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-c----------------C--CccccccccCCCCEEEEEcC
Confidence 588899999999887766 333566665443222111 0 0 04667789999877666666
Q ss_pred CCeEEEEE-CCCCeee-EEEe--ccCCCeEEEEEecCCCCEEEEEe---CCCeEEEEeCccccCC-----Ccceeeeccc
Q 011216 248 DDCIYVYD-LEANKLS-LRIL--AHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVK-----GKPAGVLMGH 315 (491)
Q Consensus 248 dg~i~vwd-~~~~~~~-~~~~--~~~~~v~~i~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~-----~~~~~~~~~~ 315 (491)
+...+++. ..++... ..+. .-...|..+.++ +++..++... .++.|.+--+...... ..+.......
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 66666663 3333322 1221 112289999999 6777666554 3466766654311111 1222223334
Q ss_pred cccEEEEEEcCCCCEEEEeeCCCc
Q 011216 316 LEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 316 ~~~i~~i~~sp~~~~l~~~~~dg~ 339 (491)
...++.++|.+++.+++.+...+.
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCCCC
Confidence 567899999999987776655443
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=95.58 E-value=1 Score=44.29 Aligned_cols=185 Identities=9% Similarity=0.010 Sum_probs=90.9
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC--CeEEEEECCCCcccccc
Q 011216 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESLA 207 (491)
Q Consensus 135 dg~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d--g~i~iwd~~~~~~~~~~ 207 (491)
++.++++||.++ .+..||..++.-... ......+.....+ .-++...++|+.+ ..+..||..+++.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~-~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI-PPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC-CCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456667777543 567788877632221 1111111111112 2367777777754 35778887666554433
Q ss_pred ceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC---eEEEEECCCCeeeEEEec-cCCCeEEEEEecCCCC
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGH 283 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~ 283 (491)
.++.... ....+. -+|+..+.|+.++ .+..||..+++....-.- ....-.+++. -++.
T Consensus 348 ~l~~~r~--------------~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~ 409 (480)
T PHA02790 348 SLLKPRC--------------NPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRR 409 (480)
T ss_pred CCCCCCc--------------ccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCE
Confidence 3221110 111122 2577777777553 477889887765432111 1111112322 3456
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-----CcEEEeeCCC
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-----g~i~iwd~~~ 347 (491)
+.+.|+ .+.+||.... ....+..+.........+.+ +++..+.|+.+ ..+..||..+
T Consensus 410 IYv~GG---~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 410 LFLVGR---NAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EEEECC---ceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 666663 5677887521 22222222221222222222 66777888754 3467777765
No 419
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.45 E-value=3.7 Score=42.20 Aligned_cols=89 Identities=18% Similarity=0.305 Sum_probs=55.8
Q ss_pred cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC----------CccccccceeccccccccccCCCCCceecEEEEEE
Q 011216 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS----------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~ 235 (491)
......|..+.++|+|++|+..|..|. .|..+.. |+.....+.......+ + ...+...|..+.|
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~-~----~~~~~~~i~qv~W 154 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERF-F----TSNSSLEIKQVRW 154 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhh-c----cCCCCceEEEEEE
Confidence 344568999999999999999987664 3333321 1111111111000000 0 0123457999999
Q ss_pred cCC---CCEEEEEecCCeEEEEECCCCe
Q 011216 236 STD---GRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 236 s~~---~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
+|. +..|++-..|+++++||+....
T Consensus 155 hP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 155 HPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 995 5789999999999999997544
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.44 E-value=0.096 Score=30.98 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.2
Q ss_pred CceEEEEEcCCC---CEEEEEECCCeEEEEECCCC
Q 011216 125 SRAYVSQFSADG---SLFVAGFQASQIRIYDVERG 156 (491)
Q Consensus 125 ~~v~~~~~s~dg---~~l~~~~~dg~i~vw~~~~~ 156 (491)
+.|.+++|||+. .+|+.+-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58999989999999999864
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.38 Score=47.59 Aligned_cols=180 Identities=12% Similarity=0.043 Sum_probs=90.7
Q ss_pred CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCC
Q 011216 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (491)
Q Consensus 146 g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (491)
-.|+||+... ..+......++ .+..+.|+.+.. |++...+|++++|++-...........+.
T Consensus 64 ~~I~If~~sG-~lL~~~~w~~~---~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~svg~e~------------- 125 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILWKHG---ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNSVGFES------------- 125 (829)
T ss_pred eeEEEEeccc-cchHHHHhcCC---CeeeecccCCce-EEEEeccceEEEeecchhhhccccccccc-------------
Confidence 3588888754 34444333232 688899987766 55667899999999865443221100010
Q ss_pred ceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec---cCCCeEEEEEecCCCCEEEEEeCCCeE--EEEeCc
Q 011216 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNLC--KVWDRR 300 (491)
Q Consensus 226 h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~~l~s~s~dg~i--~iwd~~ 300 (491)
....|..+.+..+| +++-..+|.+.+-+-.......++.. ...+-+|-+..++..+....-.-+-.| .++-..
T Consensus 126 ~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~ 203 (829)
T KOG2280|consen 126 QMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE 203 (829)
T ss_pred ccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence 11135555665566 44444556665544322222222221 122223333332322111111111000 111111
Q ss_pred cccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
+ .......+....+.+..+..||+.++|+--..+|.|.+-+....
T Consensus 204 ~---~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 204 E---SRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred c---ccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 0 11111222222456778899999999999999999888877653
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.30 E-value=4.3 Score=42.10 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=68.3
Q ss_pred CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEc----------------CCCCEEEE
Q 011216 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS----------------TDGRELVA 244 (491)
Q Consensus 181 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s----------------~~~~~l~~ 244 (491)
+..|++++.++.|.-.|..+|+.+............ . .| .....+++. ..+..++.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~------~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-R------QH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-c------cc-ccccceEEecCCcccccccccccccccCCEEEE
Confidence 456677777888888898888876554433211100 0 00 001111111 13457888
Q ss_pred EecCCeEEEEECCCCeeeEEEeccCCCeE-------------EEEEecC--CCCEEEEEeC----------CCeEEEEeC
Q 011216 245 GSSDDCIYVYDLEANKLSLRILAHTSDVN-------------TVCFGDE--SGHLIYSGSD----------DNLCKVWDR 299 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-------------~i~~~~~--~~~~l~s~s~----------dg~i~iwd~ 299 (491)
++.|+.+.-.|.++++.+..+. ..+.|. .+.- ++ .+..++.|+. +|.|+-+|.
T Consensus 266 ~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts-~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 266 PTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTS-PPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred ecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCccccccc-CCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence 9999999999999999886652 222211 0010 11 1345666643 688999999
Q ss_pred ccccCCCcceeeec
Q 011216 300 RCLNVKGKPAGVLM 313 (491)
Q Consensus 300 ~~~~~~~~~~~~~~ 313 (491)
+ +++.+-.+.
T Consensus 344 ~----TGkl~W~~~ 353 (764)
T TIGR03074 344 N----TGALVWAWD 353 (764)
T ss_pred C----CCcEeeEEe
Confidence 8 666665543
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=95.25 E-value=1.5 Score=43.10 Aligned_cols=103 Identities=7% Similarity=-0.103 Sum_probs=53.9
Q ss_pred CCceEEEEecCC-----eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC--CeEE
Q 011216 180 DQRHLVYASMSP-----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--DCIY 252 (491)
Q Consensus 180 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d--g~i~ 252 (491)
++..+++|+.++ .+..||..+++......++.... .. +++ .-++...++|+.+ ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~--------------~~-~~v-~~~~~iYviGG~~~~~sve 334 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRL--------------YA-SGV-PANNKLYVVGGLPNPTSVE 334 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhh--------------cc-eEE-EECCEEEEECCcCCCCceE
Confidence 455566666542 57778887766544443322110 11 112 2367777777753 3578
Q ss_pred EEECCCCeeeEEEec-cCCCeEEEEEecCCCCEEEEEeCCC---eEEEEeCc
Q 011216 253 VYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRR 300 (491)
Q Consensus 253 vwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~s~dg---~i~iwd~~ 300 (491)
.||..+++....-.- ....-.+++. -++++.+.|+.++ .+..||.+
T Consensus 335 ~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 335 RWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred EEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCC
Confidence 888876654321111 1111112232 3577778877654 46678765
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.24 E-value=0.57 Score=46.55 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=68.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeC--CCCceEEEEecCCeEEEEECCCCc----
Q 011216 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGT---- 202 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~s--p~~~~l~~~~~dg~i~iwd~~~~~---- 202 (491)
-+.-|.-++..++-+....+.|||...+....... . ...+.|.++.|. |+++.+++.+....|.++.-..-.
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~-f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES-F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee-e-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 33344444544444455689999998875332222 1 335589999984 688999999999999998642111
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
......+.. ........| +|.+..|.++|..++.+ .+.+.|+|-
T Consensus 112 ~p~w~~i~~------i~i~~~T~h--~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRK------IDISSHTPH--PIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CcccceeEE------EEeecCCCC--CccceeEecCCeEEEEe--CCEEEEECC
Confidence 101111111 111111123 78899999999644443 356888874
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.24 E-value=2.8 Score=39.58 Aligned_cols=142 Identities=14% Similarity=0.187 Sum_probs=73.1
Q ss_pred eEEEeEeCCCCceEEEEe-----------cCC-eEEEEECCC--CccccccceeccccccccccCCCCCceecEEEEEEc
Q 011216 171 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~-----------~dg-~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s 236 (491)
....|+|.++|+++++-. ..+ .|.+++-.+ ++......+.. ++ .....+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~l-----------~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---EL-----------SMVTGLAVA 80 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---CC-----------CCccceeEe
Confidence 467899999999776643 123 677776443 22221111111 11 135678888
Q ss_pred CCCCEEEEEecCCeEEEE-ECCCC-----e--eeE-EEec----cCCCeEEEEEecCCCCEEEEEeCC------------
Q 011216 237 TDGRELVAGSSDDCIYVY-DLEAN-----K--LSL-RILA----HTSDVNTVCFGDESGHLIYSGSDD------------ 291 (491)
Q Consensus 237 ~~~~~l~~~~~dg~i~vw-d~~~~-----~--~~~-~~~~----~~~~v~~i~~~~~~~~~l~s~s~d------------ 291 (491)
++| |+++.... |..+ |.... + .+. .+.. +......++|. +++.+.++-+..
T Consensus 81 ~~G--lyV~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 81 VGG--VYVATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred cCC--EEEeCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCcc
Confidence 888 44444444 4444 54321 1 111 1211 12346789997 677766655421
Q ss_pred -------CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee
Q 011216 292 -------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 292 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~ 335 (491)
|.|.-++.. +.....+.........++|+|+|+++++-.
T Consensus 157 ~~~~~~~g~i~r~~pd-----g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPD-----GGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CcccccCceEEEEecC-----CCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 233334432 222222222223346789999998877644
No 426
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.19 E-value=0.92 Score=45.14 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=73.1
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe-ccCCCeEEEEEe-cCCCCEEEEEeCCCeEEEEeCc-----cccC
Q 011216 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG-DESGHLIYSGSDDNLCKVWDRR-----CLNV 304 (491)
Q Consensus 232 ~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~-~~~~~~l~s~s~dg~i~iwd~~-----~~~~ 304 (491)
-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|. .++++.+++.+..+.|.++.-. ....
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 34444455544444455679999999887543332 457889999996 3678888899999999998542 1111
Q ss_pred CCcceee--ecccc-ccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 305 KGKPAGV--LMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 305 ~~~~~~~--~~~~~-~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
...++.. +..++ .+|....|.++|..++.+ ++.+.|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 2223332 23344 578899999998765544 3468888753
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.35 Score=50.12 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=90.7
Q ss_pred eEEEeEeCCCCceEEEEe--cCCeEEEEECCCCccccccc---eeccccccccccCCCCCceecEEEEEEcCCC-CEEEE
Q 011216 171 TVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLAN---VTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVA 244 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~ 244 (491)
+|..+...+|+...++.. .+-.|..||+.+-....... +...... + .......++.|+|.- ...++
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts--~------ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATS--F------EKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccch--h------ccccccccccccCCccchhhh
Confidence 566667777876555543 33378899987543322111 0000000 0 011145678888843 24566
Q ss_pred EecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc----ccccEE
Q 011216 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGIT 320 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~ 320 (491)
...|+.|++..+........-..-....++++|+ +.|..++.|-..|++.-|-.. ......+.+ ....|.
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~-----leik~~ip~Pp~~e~yrvl 247 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPS-----LEIKSEIPEPPVEENYRVL 247 (1405)
T ss_pred hccccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecc-----cceeecccCCCcCCCccee
Confidence 7788989888775543332222456678999998 788999999999999888753 222222211 146789
Q ss_pred EEEEcCCCCEEEEe
Q 011216 321 FIDSRGDGRYLISN 334 (491)
Q Consensus 321 ~i~~sp~~~~l~~~ 334 (491)
+|.|-....++++-
T Consensus 248 ~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 248 SVTWLSTQEFLVVY 261 (1405)
T ss_pred EEEEecceeEEEEe
Confidence 99998776666543
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.56 Score=43.59 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=70.1
Q ss_pred ecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE----EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc
Q 011216 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 228 ~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 303 (491)
++|.++.|++|.+.||+--.+.+|.+++....+.... .+..+..|....|+ .+ .-++..+..| +-+|...
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~--- 140 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVL--- 140 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEc---
Confidence 3899999999999999999999999999854443222 22334568899997 33 4455555444 4455443
Q ss_pred CCCcceeeeccccccEEEEEEcCCCCEEEEee
Q 011216 304 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 304 ~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~ 335 (491)
.....++..+.|.-.|.-..|.++.+.++.++
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 13445566677888888889998877655443
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.85 E-value=2.2 Score=42.99 Aligned_cols=163 Identities=12% Similarity=0.120 Sum_probs=91.4
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEE------Eeec-------------cCCceeEEEeEeCC--CCceEEEEecCCeEE
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQK------DILA-------------KSLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~------~~~~-------------~~~~~~v~~l~~sp--~~~~l~~~~~dg~i~ 194 (491)
.++|+++. .+.|.||+.+.-..... .... ......|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 67777775 67999999865322110 0000 00112466665544 346888999999999
Q ss_pred EEECCCCc--cccc-cceeccccccccccCCCCCceecEEEEEEc--CCCCEEEEEecCCeEEEEECCCC--eeeE-EEe
Q 011216 195 IVDVGSGT--MESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN--KLSL-RIL 266 (491)
Q Consensus 195 iwd~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s--~~~~~l~~~~~dg~i~vwd~~~~--~~~~-~~~ 266 (491)
+|.+++=. .... .............+.-.......+++++++ ...++||+++....|.||-.... +... .-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 99763210 0000 000000000000000000122378899998 77888888888888888765432 1111 111
Q ss_pred ccCCCeEEEEEecCC----CC-EEEEEeCCCeEEEEeC
Q 011216 267 AHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVWDR 299 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~----~~-~l~s~s~dg~i~iwd~ 299 (491)
.|...|.+|+|.+.+ |. .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 355678999997543 22 7888999999988887
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.81 E-value=5.6 Score=40.90 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=53.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 307 (491)
.|..+.++|+|++|+..+..| |.|..+... .....+.+....|.|-.+. -+..++
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~-v~~~~~---------------------- 141 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVP-VDERFF---------------------- 141 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEE-echhhc----------------------
Confidence 799999999999999988866 555555321 1111122222333333331 211111
Q ss_pred ceeeeccccccEEEEEEcCC---CCEEEEeeCCCcEEEeeCCCCC
Q 011216 308 PAGVLMGHLEGITFIDSRGD---GRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 308 ~~~~~~~~~~~i~~i~~sp~---~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
...+...|..+.|+|. +.+|++-..|+.+++||+....
T Consensus 142 ----~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 ----TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ----cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 0112345666778775 4777777888888888886543
No 431
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.73 E-value=3.5 Score=38.13 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=68.6
Q ss_pred CCceEEEEEcCCCCEEEEEECCCe------EEEEECCCC------eEEEEEeeccCCce--------eEEEeEeCCCCce
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVERG------WKIQKDILAKSLRW--------TVTDTSLSPDQRH 183 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~------i~vw~~~~~------~~~~~~~~~~~~~~--------~v~~l~~sp~~~~ 183 (491)
-+.+..+.+.+++..+++.+++|. +..+++... -............+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788999976666777777777 655555431 01111111111111 3447888778887
Q ss_pred EEEEecC------CeEEEEECCCCccccccceeccccccccccC--CCCCceecEEEEEEcCCCCEEEEEec
Q 011216 184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 184 l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
+++.-.+ ..|..++.. |+......++... ..... .....+....+++++|+|+.|+++..
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~---~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAF---LPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcccccc---ccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 7776666 678888876 6654443333211 00000 11223447899999999997776543
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.69 E-value=2.8 Score=39.59 Aligned_cols=41 Identities=10% Similarity=0.025 Sum_probs=24.8
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D 461 (491)
|.|.-+|...++....-.++ .....++|+|+|.++++-..+
T Consensus 164 g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 45666776554432222233 345789999999887764433
No 433
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.54 E-value=0.14 Score=30.27 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.1
Q ss_pred CCeEEEEEecCCC--CEEEEEeCCCeEEEEeCc
Q 011216 270 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 270 ~~v~~i~~~~~~~--~~l~s~s~dg~i~iwd~~ 300 (491)
+.|.++.|+|..+ .+|+.+-.-|.|.|+|++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999996666 799999999999999998
No 434
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=0.59 Score=48.53 Aligned_cols=115 Identities=13% Similarity=0.030 Sum_probs=75.8
Q ss_pred cEEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeE-----EEe------ccCCCeEEEEEecCCCCEEEEEeCCCeEE
Q 011216 229 GIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSL-----RIL------AHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~-----~~~------~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 295 (491)
++..+...+|+...++... +-.|+.||+++-.... -+. .......++.|+|.-....+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 5666777778765554433 3479999987533211 111 22345677888865556677888899999
Q ss_pred EEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+..+... ...+.. .......++++|+|.|+.++.|-..|++.-|...-
T Consensus 182 V~~~~~~---~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 182 VKSTKQL---AQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhh---hhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 9877511 111122 22345689999999999999999999998886554
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.98 E-value=3.4 Score=39.34 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=83.3
Q ss_pred CCceEEE-EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-------EEEEEecCCeE
Q 011216 180 DQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-------ELVAGSSDDCI 251 (491)
Q Consensus 180 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-------~l~~~~~dg~i 251 (491)
+..+|+. +.....++-.|++.|+.+....+.. .+ -+.|.|+.+ .-++|-.+..|
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS~~sv 539 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSV 539 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeecccce
Confidence 4444443 3444567777777777765554332 12 345555321 12344445555
Q ss_pred EEEECCCCe-eeEEE--e--ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC
Q 011216 252 YVYDLEANK-LSLRI--L--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 252 ~vwd~~~~~-~~~~~--~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp 326 (491)
.-.|.+... .+... . .......|..- ....+++.++..|-|++||.- .......+.+....|..|..+.
T Consensus 540 FrIDPR~~gNKi~v~esKdY~tKn~Fss~~t--TesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta 613 (776)
T COG5167 540 FRIDPRARGNKIKVVESKDYKTKNKFSSGMT--TESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTA 613 (776)
T ss_pred EEecccccCCceeeeeehhcccccccccccc--ccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeec
Confidence 555554322 11111 1 11222333333 345689999999999999974 3333445566778899999999
Q ss_pred CCCEEEEeeCCCcEEEeeCCC
Q 011216 327 DGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+|+++++.+. ..|.+-|++-
T Consensus 614 ~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 614 NGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred CCcEEEEeec-ceEEEEeccc
Confidence 9999877665 4678888765
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.92 E-value=1.9 Score=40.87 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=92.3
Q ss_pred EEEecCCCCEEE-EEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC--------CEEEEeeCCCcEEEeeC
Q 011216 275 VCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--------RYLISNGKDQAIKLWDI 345 (491)
Q Consensus 275 i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~--------~~l~~~~~dg~i~iwd~ 345 (491)
+-.+..+.++|+ .|+....++--|+. .++.+..+..|... -+.|.|+. +.| +|-.+..|.-.|.
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIE----rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDP 544 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIE----RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDP 544 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecc----cceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecc
Confidence 333334555544 44555667777776 77888888776654 46677743 233 3444555555565
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVY 425 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 425 (491)
+-.. ..+....... ....-.|+........|+|+|+..|.|++|
T Consensus 545 R~~g---------------------------------NKi~v~esKd---Y~tKn~Fss~~tTesGyIa~as~kGDirLy 588 (776)
T COG5167 545 RARG---------------------------------NKIKVVESKD---YKTKNKFSSGMTTESGYIAAASRKGDIRLY 588 (776)
T ss_pred cccC---------------------------------Cceeeeeehh---ccccccccccccccCceEEEecCCCceeee
Confidence 5421 1111111111 111112333333456799999999999999
Q ss_pred ECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 426 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 426 d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
|.-.-+....+.+....|..+..+.+|+++++.+. ..+.+-|++..
T Consensus 589 DRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ik 634 (776)
T COG5167 589 DRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPIK 634 (776)
T ss_pred hhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecccc
Confidence 96544444556677788999999999997766654 46777777653
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=3.9 Score=34.10 Aligned_cols=178 Identities=15% Similarity=0.078 Sum_probs=92.8
Q ss_pred CCCEEEEEec--CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc
Q 011216 238 DGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 238 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-.+.+..-.-.+|.-..+|.+ ..+.+..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~----t~~~lg~~~y- 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDAD----TLEELGRFSY- 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChH----Hhhhhccccc-
Confidence 4555666554 34699999999987655432211221111110112233334467788888887 4444444332
Q ss_pred cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee
Q 011216 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 316 ~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
.+.=..++. |++.|+.+....+++.-|..+...... ...+..+.. ..
T Consensus 130 ~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~------------------------------v~VT~~g~p-v~ 176 (262)
T COG3823 130 EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT------------------------------VQVTDDGVP-VS 176 (262)
T ss_pred CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcce------------------------------EEEEECCee-cc
Confidence 222344443 455566665556677777665432211 111112111 11
Q ss_pred eeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec------------CCCCCeeeeEecCCCC-eEEEE
Q 011216 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------------YHTSPVRDCSWHPSQP-MLVSS 458 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------------~h~~~v~~~~~s~~~~-~l~s~ 458 (491)
.+...-|- +|.+.|-.-.+..|...|..+|+.+.-+. .|..-.+.+++.|++. +++||
T Consensus 177 ~LNELE~V-----dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 177 KLNELEWV-----DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccceeee-----ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11111110 56666666666677777777777765543 2445678899999884 55555
No 438
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.35 E-value=7.4 Score=36.88 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=21.0
Q ss_pred CeEEEEECCCCeeeEEEecc--CCCeEEEEEecCCCCEEEEEeC
Q 011216 249 DCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~~l~s~s~ 290 (491)
..+.+||..+++....-... ...-.++.. .++++++.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~--~~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVI--KGNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEE--ECCEEEEEeee
Confidence 35889998887664321111 111223433 34667777764
No 439
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=4.7 Score=43.11 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=30.6
Q ss_pred cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.+.++|..+.....-..+.+-+..+.|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5678999999988888899999999999999987
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.27 E-value=8.9 Score=38.94 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=72.7
Q ss_pred cEEEEEEcC--CCCEEEEEecCCeEEEEECCC-------C----e---------eeEEEeccCCCeEEEEEec-CCCCEE
Q 011216 229 GIFSLKFST--DGRELVAGSSDDCIYVYDLEA-------N----K---------LSLRILAHTSDVNTVCFGD-ESGHLI 285 (491)
Q Consensus 229 ~v~~i~~s~--~~~~l~~~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~i~~~~-~~~~~l 285 (491)
.|..|.... +...|+++..||.|.+|.+++ . . +...+ .-...+.+++++. ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 455555443 556889999999999997631 0 0 11111 2334678888851 346788
Q ss_pred EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-----C-EEEEeeCCCcEEEeeC
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-----R-YLISNGKDQAIKLWDI 345 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-----~-~l~~~~~dg~i~iwd~ 345 (491)
|+++....|.||-....+....... -..+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888887652211111111 11256678888886643 2 7788899999999888
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.19 E-value=5.9 Score=35.31 Aligned_cols=230 Identities=11% Similarity=0.131 Sum_probs=119.8
Q ss_pred EEEeEeCCCCceEEEEecCCeEEEEECCCCc----ccc-ccceeccccccccccCCCCCceecEEEEEEcCCC-------
Q 011216 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGT----MES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------- 239 (491)
Q Consensus 172 v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~------- 239 (491)
-..|+++|.+.+.++....+...+||..... ... ...++.. ....-....+.+.|+...
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~---------~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP---------PPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC---------CCCCCCCCccEEEEeCCCceEEcCC
Confidence 5678999999888887778899999986221 101 1111100 000011234555555322
Q ss_pred -----CEEEEEecCCeEEEEECCCCee-----eEEEe-ccCCCe-EEEEEec-CCCCEEEEEe-CCCeEEEEeCccccCC
Q 011216 240 -----RELVAGSSDDCIYVYDLEANKL-----SLRIL-AHTSDV-NTVCFGD-ESGHLIYSGS-DDNLCKVWDRRCLNVK 305 (491)
Q Consensus 240 -----~~l~~~~~dg~i~vwd~~~~~~-----~~~~~-~~~~~v-~~i~~~~-~~~~~l~s~s-~dg~i~iwd~~~~~~~ 305 (491)
..++.+++||+|.-|...-+.. ...+. .....| ..+++.. ..+++|+.+. ..++|.++|-.
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----- 170 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----- 170 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-----
Confidence 2367788999999998533322 11221 112333 3455431 2245555544 57899999864
Q ss_pred Ccceee---eccc-----ccc--E---------EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeece
Q 011216 306 GKPAGV---LMGH-----LEG--I---------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 306 ~~~~~~---~~~~-----~~~--i---------~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
..++.. +... -.+ | +...-.++.+.=+.+..-|.|-+||+..
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G------------------- 231 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG------------------- 231 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-------------------
Confidence 121111 1100 000 1 1111122222222233345677777664
Q ss_pred eecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc-c-cCCCcEEEEEecCCeEEEEECCCccEEEEecCCCC---
Q 011216 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV-Y-STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS--- 441 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--- 441 (491)
+.++.+.....+.........|+ | ...+.+|+---.||+|..||..+++.+..+....+
T Consensus 232 ----------------~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi 295 (336)
T TIGR03118 232 ----------------QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV 295 (336)
T ss_pred ----------------cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence 56666644443333333333332 1 22466666666699999999999998888864432
Q ss_pred ---CeeeeEecC
Q 011216 442 ---PVRDCSWHP 450 (491)
Q Consensus 442 ---~v~~~~~s~ 450 (491)
.++.++|..
T Consensus 296 ~i~GLWgL~fGn 307 (336)
T TIGR03118 296 KVDGLWSLTFGN 307 (336)
T ss_pred EecCeEEeeeCC
Confidence 467778765
No 442
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=10 Score=40.74 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.9
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVER 155 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~ 155 (491)
.......++|+|.-.++|.+..+|.|.+|-...
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 344567789999999999999999999998654
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=12 Score=37.78 Aligned_cols=192 Identities=10% Similarity=0.127 Sum_probs=92.2
Q ss_pred CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee--e--ccccccEEEEEE
Q 011216 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L--MGHLEGITFIDS 324 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~--~~~~~~i~~i~~ 324 (491)
-.|+|+++ +|..+.++.-..+.+-.+.|+ +...|++...+|++.+|++. +..+.. . ......|..+.+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-----hhhhcccccccccccCceeEEEE
Confidence 45888887 455555554444588999996 45667788999999999984 222222 1 112233444444
Q ss_pred cCCCCEEEEeeCCCcE-EEeeCCCCCCccccc---cCcccceeeceeecCCCCcccc-c-----CCCCCeeEEEccccee
Q 011216 325 RGDGRYLISNGKDQAI-KLWDIRKMSSNASCN---LGFRSYEWDYRWMDYPPQARDL-K-----HPCDQSVATYKGHSVL 394 (491)
Q Consensus 325 sp~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 394 (491)
..+|-.+++. +|.+ .+-+........... .......|.+..-...+..... . +...........|..
T Consensus 136 f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~- 212 (829)
T KOG2280|consen 136 FHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL- 212 (829)
T ss_pred ecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccccccc-
Confidence 4455444433 3333 333333211100000 0011122222211111111000 0 000000000011110
Q ss_pred eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec--CCCCCeeeeEecCCC
Q 011216 395 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQ 452 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s~~~ 452 (491)
............||+.++|+--...|.|.+-+....+.+..+. .|. +...++|.-+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 0111122233567789999999999999999887777766665 232 33367775544
No 444
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.58 E-value=0.85 Score=39.21 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=51.0
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEe----ecc-------CCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDI----LAK-------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 132 ~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~----~~~-------~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
+..++++|++-+.+|.+++||+.+++.+.... ... .....|..+.++.+|.-|++-+ +|....|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 55678899999999999999999875544320 011 2345788889998887777655 57788888765
Q ss_pred Ccc
Q 011216 201 GTM 203 (491)
Q Consensus 201 ~~~ 203 (491)
+..
T Consensus 97 ~~W 99 (219)
T PF07569_consen 97 GCW 99 (219)
T ss_pred cee
Confidence 443
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.56 E-value=0.29 Score=49.36 Aligned_cols=214 Identities=15% Similarity=0.140 Sum_probs=107.3
Q ss_pred ccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC--CeEEEEEee--ccCCceeEEEeEeCC---CCceEEEEec
Q 011216 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER--GWKIQKDIL--AKSLRWTVTDTSLSP---DQRHLVYASM 189 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~--~~~~~~~~~--~~~~~~~v~~l~~sp---~~~~l~~~~~ 189 (491)
..+.+..+.|-.++|.. +...++ -.-|.+.||+++- |+....+.. .......+.-+.|.| +.-++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34577888898898843 222222 2236788998752 322111111 111122344455554 6677777888
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC-----CCeeeEE
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-----ANKLSLR 264 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~ 264 (491)
++.|++.+++......+...........+- .. +-+.--..+|||+.++.++.||.++.|.+. ...++..
T Consensus 204 ~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~--~~----g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 204 GGEIRLLNINRALRSLFRSHSQRVTDMAFF--AE----GVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred CCceeEeeechHHHHHHHhcCCCcccHHHH--hh----chhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 889988877654431111100000000000 00 011112379999999999999998888763 2234445
Q ss_pred EeccCC-CeEEEEEecCCC---------CEEEEEe-CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE---
Q 011216 265 ILAHTS-DVNTVCFGDESG---------HLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY--- 330 (491)
Q Consensus 265 ~~~~~~-~v~~i~~~~~~~---------~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~--- 330 (491)
.+.|++ +-.|.-+. ... .++++++ .+..+++|... ..+++ +....+.|..+. -+++..
T Consensus 278 wkphd~~p~vC~lc~-~~~~~~v~i~~w~~~Itttd~nre~k~w~~a----~w~Cl--l~~~~d~v~iV~-p~~~~v~~~ 349 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWLCH-KQEILVVSIGKWVLRITTTDVNREEKFWAEA----PWQCL--LDKLIDGVQIVG-PHDGEVTDL 349 (1283)
T ss_pred cCCCCCCCceeeeec-cccccCCccceeEEEEecccCCcceeEeecc----chhhh--hhhcccceEeec-CCCccccch
Confidence 556662 32333232 111 2334443 34568888865 33443 222223444444 333321
Q ss_pred ---------EEEeeCCCcEEEeeCCC
Q 011216 331 ---------LISNGKDQAIKLWDIRK 347 (491)
Q Consensus 331 ---------l~~~~~dg~i~iwd~~~ 347 (491)
++..+-++.|.+|--+.
T Consensus 350 ~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 350 SMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred hhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 23345567777775443
No 446
>PLN02193 nitrile-specifier protein
Probab=92.54 E-value=11 Score=36.89 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=71.6
Q ss_pred CCCEEEEEECC-------CeEEEEECCCCeEEEEEeec--cCCceeEEEeEeCCCCceEEEEecC-----CeEEEEECCC
Q 011216 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGS 200 (491)
Q Consensus 135 dg~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~~~~~d-----g~i~iwd~~~ 200 (491)
++.+++.|+.+ ..+.+||+.+..-. ..... ..........+..-++++.+.|+.+ +.+..+|+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~-~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS-ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEE-eCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 34566666642 24778888775322 11110 0000001111112256666777654 3588888887
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----CeEEEEECCCCeeeEEEe-----ccCC
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRIL-----AHTS 270 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~-----~~~~ 270 (491)
.+.......... +.....| +++. -++++++.|+.+ ..+..||+.+.+....-. ....
T Consensus 254 ~~W~~l~~~~~~-------P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~ 320 (470)
T PLN02193 254 NEWKLLTPVEEG-------PTPRSFH-----SMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRG 320 (470)
T ss_pred CEEEEcCcCCCC-------CCCccce-----EEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCC
Confidence 765443322100 1111122 1222 246667777654 347788888776532111 0111
Q ss_pred CeEEEEEecCCCCEEEEEeCC----CeEEEEeCc
Q 011216 271 DVNTVCFGDESGHLIYSGSDD----NLCKVWDRR 300 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~d----g~i~iwd~~ 300 (491)
. ..++. .++++++.++.+ ..+.+||+.
T Consensus 321 ~-~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~ 351 (470)
T PLN02193 321 G-AGLEV--VQGKVWVVYGFNGCEVDDVHYYDPV 351 (470)
T ss_pred C-cEEEE--ECCcEEEEECCCCCccCceEEEECC
Confidence 1 12222 246677777655 457888876
No 447
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.54 E-value=1.2 Score=38.28 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=53.1
Q ss_pred eCCCCceEEEEecCCeEEEEECCCCcccccc-ceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEE
Q 011216 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (491)
Q Consensus 177 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd 255 (491)
+..++++|++.+.+|.+++||+.+++..... .+...-.... .........|..+.++.+|.-+++- .+|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---VSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---cccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEec
Confidence 4457889999999999999999988764332 1111110000 0000334478899999888766665 467889998
Q ss_pred CCCCeeeE
Q 011216 256 LEANKLSL 263 (491)
Q Consensus 256 ~~~~~~~~ 263 (491)
..-+..+.
T Consensus 94 ~~L~~W~~ 101 (219)
T PF07569_consen 94 PDLGCWIR 101 (219)
T ss_pred cccceeEE
Confidence 77655543
No 448
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.30 E-value=9.3 Score=35.30 Aligned_cols=138 Identities=9% Similarity=0.025 Sum_probs=66.8
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeE---EEEEeeccCCceeEEEeEeCCCCceEEEEec-----CCeEEEEECCCC
Q 011216 135 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG 201 (491)
Q Consensus 135 dg~~l~~~~~d-----g~i~vw~~~~~~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-----dg~i~iwd~~~~ 201 (491)
++.+++.|+.+ ..+..||+.+... .............. +++. -+++..+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55677777654 3566777766532 11111111111111 1121 25666667664 236888888877
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC----eEEEEECCCCeeeEEEecc--CCC----
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLRILAH--TSD---- 271 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~--~~~---- 271 (491)
+......++... .....+..-++++.+.|+.++ .+.+||..+.+....-... ..+
T Consensus 150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~ 214 (323)
T TIGR03548 150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLL 214 (323)
T ss_pred CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceecc
Confidence 654443221100 011112223567777777653 3568898887653221100 011
Q ss_pred -eEEEEEecCCCCEEEEEeCC
Q 011216 272 -VNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 272 -v~~i~~~~~~~~~l~s~s~d 291 (491)
...+.+ .++.+++.|+.+
T Consensus 215 ~~~~~~~--~~~~iyv~GG~~ 233 (323)
T TIGR03548 215 GAASIKI--NESLLLCIGGFN 233 (323)
T ss_pred ceeEEEE--CCCEEEEECCcC
Confidence 112222 356788888866
No 449
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.26 E-value=8 Score=34.51 Aligned_cols=206 Identities=16% Similarity=0.133 Sum_probs=111.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECC------CCeEEEEEeec-c--CCceeEEEeEeCCCCc------------eE
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVE------RGWKIQKDILA-K--SLRWTVTDTSLSPDQR------------HL 184 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~------~~~~~~~~~~~-~--~~~~~v~~l~~sp~~~------------~l 184 (491)
.-+-++|+|.+.+-++....+...+||.. ....+...+.. . ......+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34789999999888888888899999986 12122211111 1 1123567777764332 35
Q ss_pred EEEecCCeEEEEECCCCcc---ccccceeccccccccccCCCCCceecEEEEEEc--CCCCEEEEEe-cCCeEEEEECCC
Q 011216 185 VYASMSPIVHIVDVGSGTM---ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGS-SDDCIYVYDLEA 258 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s--~~~~~l~~~~-~dg~i~vwd~~~ 258 (491)
+.+++||+|.-|...-+.. .....+..... +. --..+++- ..+.+|..+. ..++|.|+|-.-
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~----------ga--vYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ----------GN--VYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCC----------cc--eeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 7788999999998543322 11111111000 11 12234443 3345555543 578899988543
Q ss_pred CeeeE--EEecc----CCCeEEE---------EEe--cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec--cccccE
Q 011216 259 NKLSL--RILAH----TSDVNTV---------CFG--DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGI 319 (491)
Q Consensus 259 ~~~~~--~~~~~----~~~v~~i---------~~~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i 319 (491)
.+... .+... .-....| .|. +++.+.=+.|..-|.|-+||. .+..++++. +.-...
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-----~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-----NGQLLRRVASSGRLNAP 246 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-----CCcEEEEeccCCcccCC
Confidence 32210 01000 0000111 111 111222223344578999998 577777663 233345
Q ss_pred EEEEEcC------CCCEEEEeeCCCcEEEeeCCCC
Q 011216 320 TFIDSRG------DGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 320 ~~i~~sp------~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
+.|+..| .+.+|+-.-.||+|..||..+.
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 6677655 4678888888999999998864
No 450
>PRK13684 Ycf48-like protein; Provisional
Probab=92.24 E-value=9.6 Score=35.37 Aligned_cols=278 Identities=11% Similarity=0.067 Sum_probs=125.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEEeec-cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~-~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
...+++++|..+.+-+|+|. +|.| |.. +.|+........ ......+.++.|.++ ..+++ +..+.|.. ..+.|
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCCC
Confidence 56889999986666666664 5533 332 333333322111 112234778888654 33333 44444322 22223
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE-EeccCCCeEEEEEecC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~~~ 280 (491)
+.-........ ..++...+ .... .+. +..++..|.|..=+ +.++.-.. ...-...+.++.+. +
T Consensus 119 ~tW~~~~~~~~----------~~~~~~~i--~~~~-~~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~-~ 182 (334)
T PRK13684 119 KNWTRIPLSEK----------LPGSPYLI--TALG-PGT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRS-P 182 (334)
T ss_pred CCCeEccCCcC----------CCCCceEE--EEEC-CCc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEEC-C
Confidence 22111111000 00111111 2222 232 33334455443322 22222111 12334568889887 5
Q ss_pred CCCEEEEEeCCCeEEE-EeCccccCCCc-ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCc
Q 011216 281 SGHLIYSGSDDNLCKV-WDRRCLNVKGK-PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 358 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~i-wd~~~~~~~~~-~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 358 (491)
++.+++++ ..|.+.. +|- .+. -......-...++.+.+.++++.++++ ..|.+.+=......
T Consensus 183 ~g~~v~~g-~~G~i~~s~~~-----gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~--------- 246 (334)
T PRK13684 183 DGKYVAVS-SRGNFYSTWEP-----GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE--------- 246 (334)
T ss_pred CCeEEEEe-CCceEEEEcCC-----CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC---------
Confidence 66555444 4555543 221 111 111122334678899999999877765 45655432122110
Q ss_pred ccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec-
Q 011216 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK- 437 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~- 437 (491)
.-....... .......+...+.+++..+++| .+|.|. .....|+.-....
T Consensus 247 -------------------------sW~~~~~~~--~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 247 -------------------------SWSKPIIPE--ITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred -------------------------ccccccCCc--cccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCc
Confidence 000000000 0000011223445566655544 566554 3444454433332
Q ss_pred --CCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 438 --YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 --~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
.-......+.|..+++.++ .+..|.|..|+-
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 298 GEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 2223577888887776665 456898888764
No 451
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=3.2 Score=44.45 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCee
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
....++|+|....++.++.+|.|.++-...-+.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~ 69 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF 69 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEE
Confidence 566789999999999999999999997654443
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.08 E-value=0.16 Score=51.01 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=64.8
Q ss_pred ceecEEEEEEcC-CCCEEEEEecCCeEEEEECC--CCeeeEEE-----eccCCCeEEEEEec--CCCCEEEEEeCCCeEE
Q 011216 226 YSFGIFSLKFST-DGRELVAGSSDDCIYVYDLE--ANKLSLRI-----LAHTSDVNTVCFGD--ESGHLIYSGSDDNLCK 295 (491)
Q Consensus 226 h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~--~~~~~~~~-----~~~~~~v~~i~~~~--~~~~~l~s~s~dg~i~ 295 (491)
..+.+-.+.|-. +-..+. -.-|.+.|||++ .|+....+ .....++.-+.|+| .+.-++..+-.++.|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 344666666643 111122 233678888875 34332222 22334455566653 3456677777788888
Q ss_pred EEeCccccCCCcceeeeccccccEEEEE-----------EcCCCCEEEEeeCCCcEEEeeCC
Q 011216 296 VWDRRCLNVKGKPAGVLMGHLEGITFID-----------SRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~i~-----------~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
+.... ......+.+|...++.++ .+|||..++....||.++.|-+-
T Consensus 209 lL~~~-----ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 209 LLNIN-----RALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred Eeeec-----hHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 76653 122234445666655443 57888888888888887777653
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.06 E-value=10 Score=35.36 Aligned_cols=41 Identities=10% Similarity=0.102 Sum_probs=21.5
Q ss_pred CeEEEEECCCCeeeEEEe-ccC-CCeEEEEEecCCCCEEEEEeCC
Q 011216 249 DCIYVYDLEANKLSLRIL-AHT-SDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~-~~~-~~v~~i~~~~~~~~~l~s~s~d 291 (491)
..+.+||..+++....-. ... ..-.+++. .++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~--~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH--KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE--ECCEEEEEeeee
Confidence 468899988776543211 111 11223333 356777777653
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.05 E-value=4.5 Score=31.16 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=67.4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----EeeccCCceeEEEeE---eCC--CCceEEEEecCCeEEEEECC
Q 011216 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQK----DILAKSLRWTVTDTS---LSP--DQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~----~~~~~~~~~~v~~l~---~sp--~~~~l~~~~~dg~i~iwd~~ 199 (491)
.-.|.....-|++++..|.|.|++......... ....-.....|++|+ |.| +...|+.|+ ...+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 446766677899999999999998764321110 001111222577775 433 235566665 5679999998
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcC---CCCEEEEEecCCeEEEEECCCCeeeE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANKLSL 263 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~ 263 (491)
...-.....++. .+.++.+-. ...-++..+.+..|.-||.+..+...
T Consensus 82 ~N~d~Fyke~~D-----------------Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 82 NNSDLFYKEVPD-----------------GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cCchhhhhhCcc-----------------ceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 876554444332 466665532 22334544556667777776555443
No 455
>PLN02153 epithiospecifier protein
Probab=91.30 E-value=12 Score=34.77 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCCEEEEEECC-------CeEEEEECCCCeEEEEEeeccC-Cc---eeEEEeEeCCCCceEEEEecC-----CeEEEEEC
Q 011216 135 DGSLFVAGFQA-------SQIRIYDVERGWKIQKDILAKS-LR---WTVTDTSLSPDQRHLVYASMS-----PIVHIVDV 198 (491)
Q Consensus 135 dg~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~-~~---~~v~~l~~sp~~~~l~~~~~d-----g~i~iwd~ 198 (491)
++++++.|+.+ ..+.+||+.+..- ........ .. .....+.+ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTW-SIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEE-EEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEEC
Confidence 45666667652 3578888877532 22111100 00 01112222 56677777753 25778888
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----------CeEEEEECCCCeee
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------DCIYVYDLEANKLS 262 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~ 262 (491)
.+.+......+.... .+.....| +++. -+++.++.|+.+ ..|.+||..+.+..
T Consensus 109 ~t~~W~~~~~~~~~~-----~p~~R~~~-----~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 109 VKNEWTFLTKLDEEG-----GPEARTFH-----SMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCCEEEEeccCCCCC-----CCCCceee-----EEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 776654332211000 00011112 1222 246667777653 25788998877654
No 456
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.09 E-value=1.5 Score=25.81 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCCcEEEEEec-CCeEEEEECCCccEEEEecCCCCCeeeeEe
Q 011216 408 TGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 408 ~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 448 (491)
|++++|++++. ++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 46777776654 789999999999888887753 33345544
No 457
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.02 E-value=1.8 Score=35.64 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=25.6
Q ss_pred ccEEEEEEcCCC------CEEEEeeCCCcEEEeeCCC
Q 011216 317 EGITFIDSRGDG------RYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 317 ~~i~~i~~sp~~------~~l~~~~~dg~i~iwd~~~ 347 (491)
..+..++|||.| -+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 4688899999999998664
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.94 E-value=0.03 Score=52.06 Aligned_cols=145 Identities=15% Similarity=0.154 Sum_probs=94.3
Q ss_pred EEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE-EEEecCCe
Q 011216 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDC 250 (491)
Q Consensus 172 v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~~dg~ 250 (491)
.....|-|.+.-++.++.+..+..||-......... .++....++|..++..+ +.+-..+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n------------------~tg~aldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN------------------PTGKALDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccC------------------CchhHhhhhhccccchhhhhhhcCCC
Confidence 445678888877888888888989986543322211 12256678888877654 44566789
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
+++||+.+.....--.+.+..-.-+.|+ +....++.+...|.+.|++.. ....+...-.|...++++++.+.+..
T Consensus 99 iylwd~n~eytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhg----tsR~iiv~Gkh~RRgtq~av~lEd~v 173 (615)
T KOG2247|consen 99 IYLWDVNSEYTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHG----TSRRIIVMGKHQRRGTQIAVTLEDYV 173 (615)
T ss_pred eeechhhhhhHHHHhccCcchHHHHhhc-cCCccccccccccceEEEecc----chhhhhhhcccccceeEEEeccccee
Confidence 9999997654321111211112226776 667778888899999999976 44445455458899999999987654
Q ss_pred EEEeeCCCcE
Q 011216 331 LISNGKDQAI 340 (491)
Q Consensus 331 l~~~~~dg~i 340 (491)
+.++.|..+
T Consensus 174 -il~dcd~~L 182 (615)
T KOG2247|consen 174 -ILCDCDNTL 182 (615)
T ss_pred -eecCcHHHH
Confidence 444444433
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.88 E-value=8.1 Score=32.62 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=63.1
Q ss_pred ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC---C---eEEEE-
Q 011216 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY- 254 (491)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d---g---~i~vw- 254 (491)
+.|+.+.....|.+|++..........+... +.|..+.++..|++|++--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 4555556677899999985555444444332 278999999999999986432 2 45664
Q ss_pred --ECC--CCeeeE-EEec---------------------cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 255 --DLE--ANKLSL-RILA---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 255 --d~~--~~~~~~-~~~~---------------------~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
+.. ...++. ++.+ -...+.+++..|-.|++++.+ ++++.+|.+.
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 222 111111 1112 234567888887778876543 4588888875
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.78 E-value=0.038 Score=51.43 Aligned_cols=141 Identities=16% Similarity=0.170 Sum_probs=95.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEE-EecCCeEEEEECCCCccccc
Q 011216 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 206 (491)
....|-|.+.-++.++.+..+..||-... .... ....+...+++|..++..++. +-..+.+.+|++.+.....+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-~~le----~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILE----LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-eecc----cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34567777777888888888999996643 2221 122234667888888865554 55678999999986544322
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~ 286 (491)
.... .|.... +.|++.+..++.+...|.+.|++..+.+.......|...++++++. ..+ +.+
T Consensus 113 E~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd-~vi 174 (615)
T KOG2247|consen 113 ESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED-YVI 174 (615)
T ss_pred hccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-eee
Confidence 2211 122222 6899988999999999999999988877766665599999999997 433 444
Q ss_pred EEeCC
Q 011216 287 SGSDD 291 (491)
Q Consensus 287 s~s~d 291 (491)
.++.|
T Consensus 175 l~dcd 179 (615)
T KOG2247|consen 175 LCDCD 179 (615)
T ss_pred ecCcH
Confidence 44444
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.56 E-value=9.6 Score=32.18 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=32.9
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 188 (491)
..|..+...+.|.+|++.... .......... +.|..+.++..|+||++--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~-~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE-CPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC-CceeEEEcch-hheeEEEeccccceEEEEE
Confidence 445444667789999998321 1122222222 4799999999999999964
No 462
>PLN02193 nitrile-specifier protein
Probab=90.48 E-value=19 Score=35.39 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=68.1
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeEEEEEeec---cCCceeEEEeEeCCCCceEEEEecCC-----eEEEEECCCC
Q 011216 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG 201 (491)
Q Consensus 135 dg~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~~~~~dg-----~i~iwd~~~~ 201 (491)
++++.+.|+.+ ..+.+||+.+.. ....... ...+.. .+++ .-++++.+.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P~~R~~-h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNE-WKLLTPVEEGPTPRSF-HSMA-ADEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCE-EEEcCcCCCCCCCccc-eEEE-EECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 55666777654 357888888762 2221111 111111 1111 23566677776543 4677888776
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC----CeEEEEECCCCeeeEEEec----cCCCeE
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA----HTSDVN 273 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~----~~~~v~ 273 (491)
+.......... .....+| ..+.+ +++.++.++.+ ..+.+||+.+.+....-.. ......
T Consensus 305 ~W~~~~~~~~~-------~~~R~~~----~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 305 KWFHCSTPGDS-------FSIRGGA----GLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred EEEeCCCCCCC-------CCCCCCc----EEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 65433211000 0011112 11122 56777777655 4589999998876432211 111122
Q ss_pred EEEEecCCCCEEEEEeCC
Q 011216 274 TVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~d 291 (491)
+++. .++++++.|+..
T Consensus 372 ~~~~--~~~~iyv~GG~~ 387 (470)
T PLN02193 372 ASAA--VGKHIVIFGGEI 387 (470)
T ss_pred EEEE--ECCEEEEECCcc
Confidence 2332 356777888753
No 463
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.41 E-value=14 Score=33.75 Aligned_cols=59 Identities=17% Similarity=0.230 Sum_probs=37.0
Q ss_pred CCceEEEEecCCeEEEEECCC--CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEEC
Q 011216 180 DQRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL 256 (491)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~ 256 (491)
++++|+.|+++|...+ ++.. ++..... +..+|+++...+..+.|++-+ ....++++++
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~------------------~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L 72 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI------------------GRRSVTQIWVLEENNVLLMISGKKPQLYSHPL 72 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec------------------CcCceEEEEEEhhhCEEEEEeCCcceEEEEEH
Confidence 3468999999885444 4543 2222222 222788999988776655544 4455999998
Q ss_pred C
Q 011216 257 E 257 (491)
Q Consensus 257 ~ 257 (491)
.
T Consensus 73 ~ 73 (302)
T smart00036 73 S 73 (302)
T ss_pred H
Confidence 4
No 464
>PLN02153 epithiospecifier protein
Probab=90.39 E-value=15 Score=34.19 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=16.9
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeee
Q 011216 238 DGRELVAGSSD-----DCIYVYDLEANKLS 262 (491)
Q Consensus 238 ~~~~l~~~~~d-----g~i~vwd~~~~~~~ 262 (491)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 45667777653 35888998877653
No 465
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=12 Score=33.12 Aligned_cols=113 Identities=13% Similarity=0.067 Sum_probs=73.5
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
-+..+.++ +++...+..+.-++|.|+.+......+. ...+.-.++.. .|++.+.+..|.-+.+.|+.... ..
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps-sP 161 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS-SP 161 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC-Cc
Confidence 35566776 4467777777779999998876544332 22234455555 48899999877777888986432 22
Q ss_pred cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
............-..++.| |++-..+..|+-+.+.|+....
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~ 202 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPH 202 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCC
Confidence 3333444333434566665 5577777788999999998744
No 466
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.24 E-value=12 Score=32.82 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=117.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
.+.-+.++-+|||..-.++...+.|--.|-.+|+...-.+-... ....+..-|||..-++-+.. -|.-.|-++.+.
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga---~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA---SPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCC---CCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 34557889999999888888888888888888854443322222 45567788888766654333 455555555554
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---------CCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
....-..+ + -........|.+.|++-+++.. .+.|++|+... ...-..
T Consensus 137 t~f~lp~~-~------------a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyG 193 (353)
T COG4257 137 TRFPLPLE-H------------ADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYG 193 (353)
T ss_pred EEeecccc-c------------CCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcc
Confidence 33222111 1 1125677889999987777652 12344444332 233467
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
|+.. +++..-++.-.+..|-..|.... ..+.+..-......-..+-.+|.|+.-++-...+.+..+|...
T Consensus 194 i~at-pdGsvwyaslagnaiaridp~~~--~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 194 ICAT-PDGSVWYASLAGNAIARIDPFAG--HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eEEC-CCCcEEEEeccccceEEcccccC--CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 7776 77887777777777777775411 1111111222233445566677888888877778888888765
No 467
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=10 Score=31.69 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=29.0
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeeEEEe------------ccCCCeEEEEEecCCCCEEEEEe
Q 011216 238 DGRELVAGSSDDCIYVYDLEANKLSLRIL------------AHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------~~~~~v~~i~~~~~~~~~l~s~s 289 (491)
||...+-.-.+..|...|.++|+.+..+. .|.+-.+.|++.|..++++++|-
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 34433333334445555666666544332 24456788898765567777663
No 468
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=89.85 E-value=13 Score=33.22 Aligned_cols=93 Identities=19% Similarity=0.317 Sum_probs=58.9
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe------cCCeEEEEECCCCeeeEE
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLR 264 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~ 264 (491)
..|++||..+.+...... +-.+.|.++.|..+.+.++.|. ....+..||+.+.....
T Consensus 16 ~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~- 78 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS- 78 (281)
T ss_pred CEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee-
Confidence 469999998877654432 2345899999997766666664 34568889998776532
Q ss_pred Eec-----cCCCeEEEEEecCCCC-EEEEEe-C--CCeEEEEeCc
Q 011216 265 ILA-----HTSDVNTVCFGDESGH-LIYSGS-D--DNLCKVWDRR 300 (491)
Q Consensus 265 ~~~-----~~~~v~~i~~~~~~~~-~l~s~s-~--dg~i~iwd~~ 300 (491)
+.. -.++|..+.+...+.. +.+.|. . +..|..||=.
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 222 2478888888644544 443443 2 2356667644
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=9.2 Score=36.73 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred ceeEEEeEeCCCCceEEEEecCCeEEEEE---------CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC
Q 011216 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVD---------VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 169 ~~~v~~l~~sp~~~~l~~~~~dg~i~iwd---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 239 (491)
...|..+..++.|..++..+.+|.+.++= +++|+..-..........+-... ..-.+..++|+|+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-----~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-----TSLTLKQAAWHPSS 177 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-----CceeeeeccccCCc
Confidence 44688889999999999999998665542 12232211111111111000000 11257778999965
Q ss_pred ---CEEEEEecCCeEEEEECCCCee
Q 011216 240 ---RELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 240 ---~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
..|..-+.|..|++||+.....
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCcch
Confidence 5788888999999999976543
No 470
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.57 E-value=17 Score=33.55 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=49.1
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeee---EEEeccCCC--eEEEEEecCCCCEEEEEeCC-----CeEEEEeCccc
Q 011216 238 DGRELVAGSSD-----DCIYVYDLEANKLS---LRILAHTSD--VNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCL 302 (491)
Q Consensus 238 ~~~~l~~~~~d-----g~i~vwd~~~~~~~---~~~~~~~~~--v~~i~~~~~~~~~l~s~s~d-----g~i~iwd~~~~ 302 (491)
++..++.|+.+ ..+..+|+.+.+.. ..+..-..+ -.+++. .++.+++.|+.. ..+..||+...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~--~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY--KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE--ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45666777654 35777888766531 122111111 122333 246677777642 35777887521
Q ss_pred cCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCc----EEEeeCCC
Q 011216 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA----IKLWDIRK 347 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~----i~iwd~~~ 347 (491)
....+..+... ......+..-++++.+.|+.++. +.+||+.+
T Consensus 150 --~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 150 --EWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred --CeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 22222222111 11111222235667777776542 34566554
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.54 E-value=14 Score=32.48 Aligned_cols=192 Identities=13% Similarity=0.078 Sum_probs=111.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec---------CCeEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVH 194 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---------dg~i~ 194 (491)
.+.-..+..-|||..-++-+.. -|.-.|-++.+...-.+.............|.+.|++-+++.. .+.|+
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~ 181 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVIS 181 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCcee
Confidence 3444567777887766554433 3444455554333333333344456788899999998888752 12455
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc---CCC
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH---TSD 271 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~ 271 (491)
+|+.-.|. ..+.|+..|||..-++.-.+..|-..|..++.. ..+... ...
T Consensus 182 vfpaPqG~--------------------------gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~g 234 (353)
T COG4257 182 VFPAPQGG--------------------------GPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAG 234 (353)
T ss_pred eeccCCCC--------------------------CCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccc
Confidence 55543221 466788899999777766677777777766632 222211 112
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
-.. .|+++-++.-++-...+.+..+|.... .=....+.+....-.++.....++.-.+-...|.|.-+|.++
T Consensus 235 sRr-iwsdpig~~wittwg~g~l~rfdPs~~---sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 235 SRR-IWSDPIGRAWITTWGTGSLHRFDPSVT---SWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ccc-cccCccCcEEEeccCCceeeEeCcccc---cceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 222 344577777778777788888876411 111223334444455666666666666555566777777765
No 472
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.04 E-value=17 Score=32.84 Aligned_cols=205 Identities=16% Similarity=0.195 Sum_probs=103.6
Q ss_pred ceEEEEEcCCCCEEEE--EEC----------CCeEEEEECCCCeEEEEEeeccC---CceeEEEeEeCCCC-----ceEE
Q 011216 126 RAYVSQFSADGSLFVA--GFQ----------ASQIRIYDVERGWKIQKDILAKS---LRWTVTDTSLSPDQ-----RHLV 185 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~--~~~----------dg~i~vw~~~~~~~~~~~~~~~~---~~~~v~~l~~sp~~-----~~l~ 185 (491)
.|+.+...++|++-+. |.. .-.|.+||+.+++.++....... ....+.++.+.... .+..
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 3677777777765442 221 12789999999976666544322 23357777776522 2333
Q ss_pred EEe-cCCeEEEEECCCCccccccceeccccc--cccccCC-CCCceecEEEEEEcC---CCCEEEEEecCCeEEEEECCC
Q 011216 186 YAS-MSPIVHIVDVGSGTMESLANVTEIHDG--LDFSAAD-DGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 186 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~h~~~v~~i~~s~---~~~~l~~~~~dg~i~vwd~~~ 258 (491)
.+. ..+-|.|+|+.+++..++......... ..+.... .......+..++.+| +++.|....-.+ -.+|.+.+
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T 160 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPT 160 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEH
Confidence 332 235899999999876554433211111 0000000 000112377777766 667777665443 23333321
Q ss_pred -----C---------eeeEEEeccC-CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-cc-c-cccEE
Q 011216 259 -----N---------KLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MG-H-LEGIT 320 (491)
Q Consensus 259 -----~---------~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~-~-~~~i~ 320 (491)
. +.+..+ +.. .....+++. +++.++++--..+.|..|+....-.. .....+ .. . -..+.
T Consensus 161 ~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~~-~~~~~l~~d~~~l~~pd 237 (287)
T PF03022_consen 161 SVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYTP-ENFEILAQDPRTLQWPD 237 (287)
T ss_dssp HHHCSTT--HHH-HHHT-EEE-EE---SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB-G-CCEEEEEE-CC-GSSEE
T ss_pred HHhhCccccccccccccceec-cccCCCCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcCc-cchheeEEcCceeeccc
Confidence 1 011222 332 355667776 78888888889999999998621111 111112 11 1 34567
Q ss_pred EEEEcC--CCCEEEEe
Q 011216 321 FIDSRG--DGRYLISN 334 (491)
Q Consensus 321 ~i~~sp--~~~~l~~~ 334 (491)
.+.+.+ +|.+.+..
T Consensus 238 ~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 238 GLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEE-T--TS-EEEEE
T ss_pred eeeeccccCceEEEEE
Confidence 888887 66554444
No 473
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.79 E-value=20 Score=33.41 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=15.0
Q ss_pred CCCEEEEEECC-----------CeEEEEECCCC
Q 011216 135 DGSLFVAGFQA-----------SQIRIYDVERG 156 (491)
Q Consensus 135 dg~~l~~~~~d-----------g~i~vw~~~~~ 156 (491)
++++.+.|+.+ ..+..||..++
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 67777777753 24777888775
No 474
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.73 E-value=22 Score=33.70 Aligned_cols=53 Identities=21% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCEEEEEecC-----------CeEEEEECCCCeeeEEEeccCCCe--EEEEEecCCCCEEEEEeCC
Q 011216 238 DGRELVAGSSD-----------DCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 238 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~s~s~d 291 (491)
++...+.|+.. ..+..||..+.+....-....... .+.... .++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCCEEEEECCCC
Confidence 46667777643 247788988766543211111111 112221 356777777754
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.26 E-value=10 Score=29.29 Aligned_cols=120 Identities=11% Similarity=0.205 Sum_probs=69.1
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEE
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
-.|......|++++..|.|.|++.......... ....+..+.-......+....
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------------------------~~~~i~~LNin~~italaaG~ 57 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------------------------QDSDISFLNINQEITALAAGR 57 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc--------------------------ccCceeEEECCCceEEEEEEe
Confidence 346556667888888899999987653321110 124455555444444444444
Q ss_pred ecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecC----CCCeEEEEECCCcEEEecCCCC
Q 011216 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP----SQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 402 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
+.+ +.+...|+.|+.. .+..||+.....+..-+. ...|+++.+-. +.++++. +.+..|.-+|....
T Consensus 58 l~~--~~~~D~LliGt~t-~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 58 LKP--DDGRDCLLIGTQT-SLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGN 127 (136)
T ss_pred cCC--CCCcCEEEEeccc-eEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCc
Confidence 443 2345677777654 599999987766544333 35577776632 2334444 44556666665543
No 476
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.96 E-value=2 Score=24.78 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.6
Q ss_pred CCCceEEEEEcCCCCEEEEEEC-C--CeEEEE
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 151 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~-d--g~i~vw 151 (491)
........+|||||++|+-.+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4556788999999998886654 4 555454
No 477
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=6.6 Score=42.06 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=31.2
Q ss_pred CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 438 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 438 ~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
.+..+|..++.......|.+-+..|+|.+|++..+...
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCcc
Confidence 46778999999888888888889999999999885543
No 478
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.63 E-value=41 Score=35.49 Aligned_cols=173 Identities=11% Similarity=0.036 Sum_probs=99.1
Q ss_pred CCCCceEEEEEc---C----CCCEEEEEECCCeEEEEE------CCCC---------eEEEEEeeccCCceeEEEeEeCC
Q 011216 122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYD------VERG---------WKIQKDILAKSLRWTVTDTSLSP 179 (491)
Q Consensus 122 ~h~~~v~~~~~s---~----dg~~l~~~~~dg~i~vw~------~~~~---------~~~~~~~~~~~~~~~v~~l~~sp 179 (491)
.-..+|..++|+ . ..++|++=. ...+.|+. +... ..+..+........+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 567899999998 2 224666554 44666766 1110 11111111112233677899999
Q ss_pred -CCceEEEEecCCeEEEEECCCCcccc--ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 011216 180 -DQRHLVYASMSPIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 180 -~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
+.+.||+....|...||++....... .........+.- ..+......-..+.|.++.+.|++++.. .+.++|+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi---~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~ 231 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSI---IFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDF 231 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccc---cCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEEC
Confidence 45789999999999999993222111 111111111110 0000111355678998888888887655 5899999
Q ss_pred CCCeeeE--EEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 257 EANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 257 ~~~~~~~--~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
++..... ........|..+.-++.+..+++.-+. ..|...++.
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~ 276 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVK 276 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEcc
Confidence 8876533 222345678888887554444443332 467777776
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.52 E-value=3.7 Score=38.42 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=94.0
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEE-EEEEcCCCCEEEEEecC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSSD 248 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~i~~s~~~~~l~~~~~d 248 (491)
..|..+-..|||+.|..-+. .++.++++.+...... ++.+...+ +..| .|+ .+..-..|.-+++++.|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg-------~~~~--~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPG-------DSRH--QVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCC-------chHH--HHHHHHHHHhCceeEEEEcCC
Confidence 46778889999998887654 6888998876544322 21111111 0001 122 12223345668888899
Q ss_pred CeEEEE-ECCCC-ee----eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 249 DCIYVY-DLEAN-KL----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 249 g~i~vw-d~~~~-~~----~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
|.|.-| |...+ .+ ++.+.-....+..+.- ..+.+-+++-+..|++.++... ..+ ...+..--+.+.-+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~p-e~~rkgF~~l~~~G~L~~f~st----~~~-~lL~~~~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLP-ETNRKGFYSLYRNGTLQSFYST----SEK-LLLFERAYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeecc-ccccceEEEEcCCCceeeeecc----cCc-ceehhhhhcCccee
Confidence 988887 44322 21 1111111233333332 1344567778888888887653 222 22222233466778
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
++||++.++++- ..|.++++.+++....
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred eeCcccchheee-cCCceEEEEecCCCCC
Confidence 999999998875 4567999998875543
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.03 E-value=10 Score=33.04 Aligned_cols=126 Identities=17% Similarity=0.183 Sum_probs=66.0
Q ss_pred EEcCCCCEEEEEEC-C--CeEEEEECCC---CeEEEEE-eeccCCceeEEEeEeCCCCceEEEEecCC-eEEEEECCCC-
Q 011216 131 QFSADGSLFVAGFQ-A--SQIRIYDVER---GWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSG- 201 (491)
Q Consensus 131 ~~s~dg~~l~~~~~-d--g~i~vw~~~~---~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~~~~~dg-~i~iwd~~~~- 201 (491)
+|-+||++|.+|+. + ..+++++... ....... ......++-. ....-|||+.|+.|+... +..+|.-...
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp-T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP-TATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccc-cceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 67889999999875 2 3588888654 1011111 1122233322 344457999999988763 3344433211
Q ss_pred -ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc
Q 011216 202 -TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 268 (491)
.......+...... ....----+-..|+|+.++.+..+. .|||..+++.++.+..-
T Consensus 152 ~~~~~~~~l~~~~~~---------~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDT---------LPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CCceeeecchhhhcc---------CccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCC
Confidence 01000000000000 0000112356679999998887654 56788888776666543
No 481
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.02 E-value=33 Score=33.77 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=66.4
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-------------CCeEEEE
Q 011216 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 196 (491)
Q Consensus 130 ~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-------------dg~i~iw 196 (491)
+.+-++|.+++... ..+..+|+... .+............=.++...|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 67788998887654 67888888643 33332222210001124667899999888772 1246666
Q ss_pred ECCCCccccccceecccccccc-----------ccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCeeeEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLR 264 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~ 264 (491)
| .+|+...........+.... ........-.-+.++.+.+....|+..++ -..|...|..+++..-.
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 77776666555443322111 00011112234888999984444555555 45899999888887766
Q ss_pred Eecc
Q 011216 265 ILAH 268 (491)
Q Consensus 265 ~~~~ 268 (491)
+..+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6544
No 482
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.00 E-value=29 Score=33.09 Aligned_cols=108 Identities=11% Similarity=-0.008 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc-
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK- 307 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 307 (491)
....+..++++.+++.+..-..++-||-........-......+..+.+. +++.+++++ .+|.+..=+ . .+.
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~-~dg~l~l~g-~~G~l~~S~-d----~G~~ 312 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWR-ADGGLWLLT-RGGGLYVSK-G----TGLT 312 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEc-CCCCEEEEe-CCceEEEec-C----CCCc
Confidence 45566778888877766544333334432221122222345678899996 677776655 556654322 2 221
Q ss_pred ----ceeeecc--ccccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 011216 308 ----PAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 308 ----~~~~~~~--~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd 344 (491)
....... ....+..+.+.+++..+++| ..|.+....
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~ 354 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST 354 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC
Confidence 1222211 12358889999887765554 667665543
No 483
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.31 E-value=4.8 Score=23.49 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=23.3
Q ss_pred CCCCEEEEEe-cCCeEEEEECCCCeeeEEEec
Q 011216 237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 237 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 267 (491)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666655 478999999998887777654
No 484
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.53 E-value=4.3 Score=23.40 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=20.6
Q ss_pred ecCCCCCeeeeEecCCCCeEEEEE-CC--CcEEEe
Q 011216 436 LKYHTSPVRDCSWHPSQPMLVSSS-WD--GDVVRW 467 (491)
Q Consensus 436 ~~~h~~~v~~~~~s~~~~~l~s~~-~D--g~i~iw 467 (491)
+....+.-...+|+|||+.|+-++ .+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 333455678899999999776554 45 666665
No 485
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.47 E-value=4.8 Score=40.44 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=44.9
Q ss_pred CCCCEEEEEECCCeEEEEECCC----CeEEEEEeecc-------------------CCceeEEEeEeCC----CCceEEE
Q 011216 134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY 186 (491)
Q Consensus 134 ~dg~~l~~~~~dg~i~vw~~~~----~~~~~~~~~~~-------------------~~~~~v~~l~~sp----~~~~l~~ 186 (491)
++...|+.+..||.+....... +.......... .....+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888999888887664 21222211110 1123456667766 7789999
Q ss_pred EecCCeEEEEECCCCcccccc
Q 011216 187 ASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~ 207 (491)
.+.|+++++||+.++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999884443
No 486
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.89 E-value=33 Score=31.78 Aligned_cols=155 Identities=16% Similarity=0.257 Sum_probs=82.1
Q ss_pred eEEEeEeCCCCceEEEEecCCe------EEEEECCC--Cccc--cccceecc--ccccccccCCCCCceecEEEEEEcCC
Q 011216 171 TVTDTSLSPDQRHLVYASMSPI------VHIVDVGS--GTME--SLANVTEI--HDGLDFSAADDGGYSFGIFSLKFSTD 238 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~------i~iwd~~~--~~~~--~~~~~~~~--~~~~~~~~~~~~~h~~~v~~i~~s~~ 238 (491)
.+..|.+.|++..+++.+.+|. +...++.. +... ........ ..+..+.. -..-..+|++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-----~~~D~Egi~~~~~ 95 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-----NGLDPEGIAVPPD 95 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-----CCCChhHeEEecC
Confidence 5788889876666666677776 55555543 1100 00000000 00111100 0113457788778
Q ss_pred CCEEEEEecC------CeEEEEECCCCeeeEEEe---------------ccCCCeEEEEEecCCCCEEEEEeC-----CC
Q 011216 239 GRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----DN 292 (491)
Q Consensus 239 ~~~l~~~~~d------g~i~vwd~~~~~~~~~~~---------------~~~~~v~~i~~~~~~~~~l~s~s~-----dg 292 (491)
|.++++.-.+ ..|+.++.. ++....+. ..+...-+|+++ ++++.|+++.. |+
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQDG 173 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCCC
Confidence 8877776666 778888876 55443331 234567899998 77776665543 22
Q ss_pred ---------eEEEEeCccccCCCcce----eeecc-----ccccEEEEEEcCCCCEEEE
Q 011216 293 ---------LCKVWDRRCLNVKGKPA----GVLMG-----HLEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 293 ---------~i~iwd~~~~~~~~~~~----~~~~~-----~~~~i~~i~~sp~~~~l~~ 333 (491)
.++++...... .+... ..+.. ....|..+.+-+++++|+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~-~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKT-PGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccccCceEEEEEecCCC-CCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 15555443111 01111 12221 3456788888888886664
No 487
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.85 E-value=5.5 Score=40.05 Aligned_cols=87 Identities=23% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCCceEEEEecCCeEEEEECCCCc----cccccceecc-----cccc-ccccCCCCCceecEEEEEEcC----CCCEEEE
Q 011216 179 PDQRHLVYASMSPIVHIVDVGSGT----MESLANVTEI-----HDGL-DFSAADDGGYSFGIFSLKFST----DGRELVA 244 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~-----~~~~-~~~~~~~~~h~~~v~~i~~s~----~~~~l~~ 244 (491)
++...++++..||.+......... .......... -.++ .........-...+..++.+. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788888899988887766411 1111000000 0000 000000111123455555655 6779999
Q ss_pred EecCCeEEEEECCCCeeeEEE
Q 011216 245 GSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~ 265 (491)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986554
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.79 E-value=7.2 Score=32.13 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=24.7
Q ss_pred cEEEEEEcCCC------CEEEEEecCCeEEEEECCC
Q 011216 229 GIFSLKFSTDG------RELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 229 ~v~~i~~s~~~------~~l~~~~~dg~i~vwd~~~ 258 (491)
.+..++|||.| -.|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999954 3788888999999998654
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.74 E-value=38 Score=32.82 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred eeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 309 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 309 ~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
+..+...-...+.|+|.|||++|++--..|.|++++..+...... ..+...
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~-----------------------------~~l~~v 72 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVV-----------------------------FTLPEI 72 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeee-----------------------------ecCCce
Q ss_pred cccceeeeeEEEEecCcc---cCCCcEEEEEec---------CCeEEEEECC-----CccEEEEecCCCCC----eeeeE
Q 011216 389 KGHSVLRTLIRCHFSPVY---STGQKYIYTGSH---------DSCVYVYDLV-----SGEQVAALKYHTSP----VRDCS 447 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~---s~~~~~l~~g~~---------dg~i~iwd~~-----~~~~~~~~~~h~~~----v~~~~ 447 (491)
........+..+.++|.| ..++.+.++-+. ...|.-|.+. -......+..-... -..|+
T Consensus 73 ~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~ 152 (454)
T TIGR03606 73 VNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLV 152 (454)
T ss_pred eccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEE
Q ss_pred ecCCCCeEEEEECCC
Q 011216 448 WHPSQPMLVSSSWDG 462 (491)
Q Consensus 448 ~s~~~~~l~s~~~Dg 462 (491)
|.|||.+.++.++.+
T Consensus 153 FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 153 FGPDGKIYYTIGEQG 167 (454)
T ss_pred ECCCCcEEEEECCCC
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.47 E-value=30 Score=31.05 Aligned_cols=119 Identities=19% Similarity=0.211 Sum_probs=66.9
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe------cCCeEEEEECCCCccccccceecccccccc
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDF 218 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-..|++||..+.. ... ...+..+.|+++.|..+.+.++.|. ....+..||..+...........
T Consensus 15 C~~lC~yd~~~~q-W~~--~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s------- 84 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ-WSS--PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS------- 84 (281)
T ss_pred CCEEEEEECCCCE-eec--CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc-------
Confidence 3469999988762 222 2344677999999997777777664 34578899988776533332110
Q ss_pred ccCCCCCceecEEEEEEcC-CCCEEE-EEe-cCC--eEEEEECCCCeeeEE-EeccCCCeEEEEEe
Q 011216 219 SAADDGGYSFGIFSLKFST-DGRELV-AGS-SDD--CIYVYDLEANKLSLR-ILAHTSDVNTVCFG 278 (491)
Q Consensus 219 ~~~~~~~h~~~v~~i~~s~-~~~~l~-~~~-~dg--~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~ 278 (491)
..-.++|..+.+.. |+..+. +|. .+| .|..||=.+...+.. .......|..+.+.
T Consensus 85 -----~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 -----NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred -----ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 01123677777743 443344 433 233 466665444333332 22334556666655
No 491
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.32 E-value=38 Score=32.71 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=0.0
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEEC-------CCCeeeEEE-eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDL-------EANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~-------~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
...+..+...|.-+++. |..+++|+. ..+.....+ .++...+.++ ++.....|.|+.|+--
T Consensus 28 ~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v---------~lv~p~~G~v~f~~~I 96 (422)
T PF08801_consen 28 PCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV---------GLVKPKTGRVVFWESI 96 (422)
T ss_dssp S-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE---------EEEE-TT-EEEEES-T
T ss_pred ceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE---------EEEEcCCCCEEecccc
Q ss_pred cccCCCcceee----------eccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecC
Q 011216 301 CLNVKGKPAGV----------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 370 (491)
Q Consensus 301 ~~~~~~~~~~~----------~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (491)
........... +......+......+.+ ++.+..+|.|.....+...
T Consensus 97 ~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~--------------------- 153 (422)
T PF08801_consen 97 SHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSN--------------------- 153 (422)
T ss_dssp T-TT--EEEE------------------EEEEEEETTT--EEEEETT--EEEEEE-TTS---------------------
T ss_pred hhhhhcCccccccccccceeeecCCceEEECCCCceEE--EEEECCCCeEEEEeCCCCC---------------------
Q ss_pred CCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC----CCCeeee
Q 011216 371 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDC 446 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~~ 446 (491)
+-.-|..-..++.........+.....+-.- ...|.++
T Consensus 154 --------------------------------------g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v 195 (422)
T PF08801_consen 154 --------------------------------------GKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPRPKIVQV 195 (422)
T ss_dssp ---------------------------------------EEEEE-TT-----------------------------EEEE
T ss_pred --------------------------------------CcEEEEEEcCcCCccccccccCceeccccCCcccchhceeeE
Q ss_pred EecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 447 SWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 447 ~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+..+..+.|++...+|.|.+|++..+.
T Consensus 196 ~~d~~r~~ly~l~~~~~Iq~w~l~~~~ 222 (422)
T PF08801_consen 196 AVDPSRRLLYTLTSDGSIQVWDLGPGG 222 (422)
T ss_dssp EEETTTTEEEEEESSE-EEEEEE-SS-
T ss_pred EecCCcCEEEEEeCCCcEEEEEEeCCC
No 492
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.25 E-value=3.5 Score=22.60 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=21.7
Q ss_pred cEEEEEecCCeEEEEECCCccEEEEe
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
..+++++.+|.++.+|..+|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36788889999999999999887654
No 493
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.16 E-value=47 Score=32.26 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=22.0
Q ss_pred ecEEEEEEcCCCCEEEEEecCCeEEEE
Q 011216 228 FGIFSLKFSTDGRELVAGSSDDCIYVY 254 (491)
Q Consensus 228 ~~v~~i~~s~~~~~l~~~~~dg~i~vw 254 (491)
..|..+..++.|..++..+.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 378889999999999999999955444
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.09 E-value=31 Score=30.15 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=47.5
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCC---CeEEEEeCccccCCCcceee--eccccccEEEEEEc
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGV--LMGHLEGITFIDSR 325 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~--~~~~~~~i~~i~~s 325 (491)
-.+||+.+++....-........+-.+. ++|++|.+|+.. ..+++++............. .......-.+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4578888876532222233333344554 789999988752 35788875421101111110 01122333445567
Q ss_pred CCCCEEEEeeCCC
Q 011216 326 GDGRYLISNGKDQ 338 (491)
Q Consensus 326 p~~~~l~~~~~dg 338 (491)
|||+.|+.|+.+.
T Consensus 127 ~DG~vlIvGG~~~ 139 (243)
T PF07250_consen 127 PDGRVLIVGGSNN 139 (243)
T ss_pred CCCCEEEEeCcCC
Confidence 7999999998773
No 495
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=82.99 E-value=55 Score=32.94 Aligned_cols=202 Identities=12% Similarity=0.092 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe---EEEE-
Q 011216 126 RAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIV- 196 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~---i~iw- 196 (491)
.+-.++.|||.+++|-+- ..-++++-|+.++..+...+ .+....++|.+|++.|.....|.. =++|
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 455678999999999653 34479999999985544332 224667899999988877665431 2233
Q ss_pred -ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECCCCeeeEEE--eccCC
Q 011216 197 -DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRI--LAHTS 270 (491)
Q Consensus 197 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~--~~~~~ 270 (491)
.+.+.......-..+.. .. --.++.-+.+.++|+.... .+.+++.+.+.......+ ....+
T Consensus 205 h~~gt~~~~d~lvyeE~d------------~~-f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g 271 (682)
T COG1770 205 HRLGTPGSSDELVYEEKD------------DR-FFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENG 271 (682)
T ss_pred EecCCCCCcceEEEEcCC------------Cc-EEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCC
Confidence 23321111110011100 01 1223333445666666553 356888887665432222 11111
Q ss_pred CeEEEEEecCCCCEEEEEeCCC-eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC---cEEEeeCC
Q 011216 271 DVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIR 346 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg---~i~iwd~~ 346 (491)
--..+.- ....+++-...+| ..+|..... ......-..+..|...+.--.++--..+|+....++ .|++++..
T Consensus 272 ~eY~~eh--~~d~f~i~sN~~gknf~l~~ap~-~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~ 348 (682)
T COG1770 272 VEYSVEH--GGDRFYILSNADGKNFKLVRAPV-SADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRK 348 (682)
T ss_pred cEEeeee--cCcEEEEEecCCCcceEEEEccC-CCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecC
Confidence 1122221 2233444444445 455555432 112222234556776666656665566776655443 47777776
Q ss_pred CC
Q 011216 347 KM 348 (491)
Q Consensus 347 ~~ 348 (491)
+.
T Consensus 349 ~~ 350 (682)
T COG1770 349 TG 350 (682)
T ss_pred CC
Confidence 53
No 496
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=81.78 E-value=37 Score=31.51 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=55.6
Q ss_pred ecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC-----CCeEEEEEecCCCCE-----------------E
Q 011216 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHL-----------------I 285 (491)
Q Consensus 228 ~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~-----------------l 285 (491)
+....++|...+.-|+++..---+...+...+... .+..+. ...+.+... +++.+ +
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~-~l~~~~~G~~~kf~N~ldI~-~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAE-LLADEAEGKPFKFLNDLDID-PEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCcce-eccccccCeeeeecCceeEc-CCCeEEEeccccccchhheEEee
Confidence 46788999998866777754433444454444311 111110 011233332 12222 2
Q ss_pred EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
+.+..+|.+.-||.. .+....+...-.-.+.++.|||+.+++.+-.
T Consensus 193 l~g~~~GRl~~YD~~-----tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPS-----TKVTKVLLDGLYFPNGLALSPDGSFVLVAET 238 (376)
T ss_pred ecCCCccceEEecCc-----ccchhhhhhcccccccccCCCCCCEEEEEee
Confidence 233356777777763 3444455544555678999999999887643
No 497
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=81.75 E-value=7.1 Score=36.71 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=93.1
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCc---eeEE-EeEeCCCCceEEEEecCCeEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR---WTVT-DTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~v~-~l~~sp~~~~l~~~~~dg~i~ 194 (491)
.+....+.|..+-..|||+.|..-+. .++.|+++.+.....+.+...... ..|+ .+..-..|..|+++..||.|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 35566778888999999998887655 688999987652211111111111 1222 222234566788888899887
Q ss_pred EE-ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeE
Q 011216 195 IV-DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 195 iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 273 (491)
-| |+..+.......... ..+.. .++..+.-..+-+-+++-+.+|++.++.....+.+..-. --..+.
T Consensus 294 QWFdvr~~~~p~l~h~R~----f~l~p-------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~ 361 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRN----FKLAP-------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQ 361 (733)
T ss_pred eeeeeecCCCCcceeeec----cccCc-------ccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcc
Confidence 76 443322211111110 00000 123333323344567777788888888765555433222 223567
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 274 TVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
-++++ +.++++++ -+.|.++++.+.
T Consensus 362 ~~~~S-p~~~~Ll~-e~~gki~~~~l~ 386 (733)
T COG4590 362 LVAMS-PNQAYLLS-EDQGKIRLAQLE 386 (733)
T ss_pred eeeeC-cccchhee-ecCCceEEEEec
Confidence 78888 66666654 355789999886
No 498
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=80.68 E-value=95 Score=34.11 Aligned_cols=22 Identities=5% Similarity=0.128 Sum_probs=15.8
Q ss_pred cCCCCCeeeeEecCCCCeEEEE
Q 011216 437 KYHTSPVRDCSWHPSQPMLVSS 458 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~~~l~s~ 458 (491)
.+|-..+.++|.+|||...++-
T Consensus 658 ~A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred ccccCCcceEEECCCCcEEEec
Confidence 3456678888999998866543
No 499
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.58 E-value=54 Score=31.26 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=35.1
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCccEEEEec---CCCCCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 405 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
.+.+++..+++ +..|.+.... ..|+.-...+ .-......+.|.++++.+++| .+|.|..|
T Consensus 334 ~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 334 GYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 34445665554 4567555543 3444433322 234568899998877666654 68887665
No 500
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=80.38 E-value=52 Score=30.94 Aligned_cols=152 Identities=11% Similarity=0.137 Sum_probs=83.2
Q ss_pred CCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCE--EEEEe-cC---CeEE
Q 011216 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-SD---DCIY 252 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~--l~~~~-~d---g~i~ 252 (491)
|...+++....++-+.+||++......+.. ... .. -.-...+.+ +|+. |++++ .+ ..|+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-Gr~-NN-----------VDvrygf~l--~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPV-GRP-NN-----------VDVRYGFPL--NGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-S-S-E-EE-----------EEEEEEEEE--TTEEEEEEEEEE-CCCT-EEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecC-CCc-ce-----------eeeecceec--CCceEEEEEEecCcCCCCeEE
Confidence 344677777888899999998766543311 100 00 001223333 3432 44444 32 4689
Q ss_pred EEECCC--CeeeEEEec-------cCCCeEEEEEe--cCCCC-EEEEEeCCCeEEEEeCcccc---CCCcceeeeccccc
Q 011216 253 VYDLEA--NKLSLRILA-------HTSDVNTVCFG--DESGH-LIYSGSDDNLCKVWDRRCLN---VKGKPAGVLMGHLE 317 (491)
Q Consensus 253 vwd~~~--~~~~~~~~~-------~~~~v~~i~~~--~~~~~-~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~ 317 (491)
+|.+.. +. +..+.. ....+..+|+. +.++. +++....+|.+.-|.+.... ...+.++.+.. ..
T Consensus 131 ~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~s 208 (381)
T PF02333_consen 131 LFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GS 208 (381)
T ss_dssp EEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS
T ss_pred EEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CC
Confidence 997753 33 222221 12346667763 33444 56667788998888775221 12245555553 34
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.+..+........|..+-.+.-|.-|+.+.
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCC
Confidence 678888888888899998887777777654
Done!