Query 011216
Match_columns 491
No_of_seqs 889 out of 3422
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 03:33:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.8E-48 6.1E-53 372.5 39.4 290 117-470 101-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 6.7E-48 2.3E-52 355.8 39.4 290 119-470 27-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 2.4E-47 8.1E-52 355.6 41.9 294 116-468 47-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 5.2E-47 1.8E-51 355.0 42.4 298 116-468 56-354 (354)
5 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-46 4.3E-51 351.4 38.0 314 118-475 9-339 (345)
6 3iz6_a 40S ribosomal protein R 100.0 1.4E-47 4.6E-52 362.9 30.8 307 118-473 60-377 (380)
7 2ynn_A Coatomer subunit beta'; 100.0 4.7E-46 1.6E-50 341.2 39.6 293 116-472 5-303 (304)
8 4g56_B MGC81050 protein; prote 100.0 9.3E-47 3.2E-51 353.5 34.2 300 120-477 38-349 (357)
9 4gqb_B Methylosome protein 50; 100.0 1.6E-46 5.5E-51 349.0 32.9 294 121-474 27-334 (344)
10 4ery_A WD repeat-containing pr 100.0 6E-45 2.1E-49 335.6 41.7 292 118-470 17-311 (312)
11 3frx_A Guanine nucleotide-bind 100.0 1.2E-44 4E-49 334.2 40.4 292 118-472 11-318 (319)
12 1erj_A Transcriptional repress 100.0 1.4E-44 4.9E-49 343.7 37.4 301 122-472 62-390 (393)
13 2xzm_R RACK1; ribosome, transl 100.0 1.2E-43 4.2E-48 331.1 37.8 293 117-472 14-341 (343)
14 2hes_X YDR267CP; beta-propelle 100.0 1.1E-43 3.7E-48 329.4 35.8 304 118-471 8-328 (330)
15 1nr0_A Actin interacting prote 100.0 1.6E-42 5.5E-47 348.4 40.7 297 113-473 48-357 (611)
16 2ymu_A WD-40 repeat protein; u 100.0 3.9E-42 1.3E-46 344.5 40.1 283 116-468 295-577 (577)
17 4aow_A Guanine nucleotide-bind 100.0 1.1E-41 3.6E-46 317.9 39.8 293 119-473 33-339 (340)
18 1nr0_A Actin interacting prote 100.0 9.9E-42 3.4E-46 342.7 41.4 341 116-474 139-570 (611)
19 4e54_B DNA damage-binding prot 100.0 4.8E-43 1.6E-47 338.0 29.1 304 118-473 113-432 (435)
20 3zwl_B Eukaryotic translation 100.0 3.5E-41 1.2E-45 317.9 40.3 291 117-473 25-348 (369)
21 3ei3_B DNA damage-binding prot 100.0 1.4E-41 4.9E-46 322.5 36.5 310 117-471 66-382 (383)
22 1gxr_A ESG1, transducin-like e 100.0 4.7E-41 1.6E-45 313.0 37.8 288 119-469 46-335 (337)
23 2ymu_A WD-40 repeat protein; u 100.0 1.2E-40 4.1E-45 333.7 41.5 285 117-471 255-539 (577)
24 2ynn_A Coatomer subunit beta'; 100.0 9.7E-41 3.3E-45 305.9 35.3 252 165-474 9-262 (304)
25 3dm0_A Maltose-binding peripla 100.0 5E-41 1.7E-45 343.1 37.1 290 119-470 377-692 (694)
26 1sq9_A Antiviral protein SKI8; 100.0 5.9E-41 2E-45 319.8 33.3 293 118-472 10-396 (397)
27 3k26_A Polycomb protein EED; W 100.0 8.5E-41 2.9E-45 314.9 32.8 302 120-470 14-365 (366)
28 3odt_A Protein DOA1; ubiquitin 100.0 9.6E-40 3.3E-44 300.8 39.0 291 117-477 11-302 (313)
29 1k8k_C P40, ARP2/3 complex 41 100.0 1.1E-40 3.8E-45 315.0 32.9 298 119-473 3-363 (372)
30 4a11_B DNA excision repair pro 100.0 9.6E-41 3.3E-45 319.4 32.1 311 114-476 33-370 (408)
31 1r5m_A SIR4-interacting protei 100.0 6.7E-40 2.3E-44 315.2 38.1 288 121-471 42-425 (425)
32 4gga_A P55CDC, cell division c 100.0 2.3E-39 7.9E-44 310.9 41.0 302 110-474 87-398 (420)
33 1vyh_C Platelet-activating fac 100.0 5.1E-40 1.8E-44 313.9 34.5 253 165-474 104-372 (410)
34 3gre_A Serine/threonine-protei 100.0 4.1E-41 1.4E-45 325.2 26.9 324 118-468 56-437 (437)
35 4h5i_A Guanine nucleotide-exch 100.0 1.7E-40 5.8E-45 311.8 29.5 301 124-476 14-348 (365)
36 2pm9_A Protein WEB1, protein t 100.0 1.1E-40 3.9E-45 319.9 28.3 299 121-472 64-415 (416)
37 4ggc_A P55CDC, cell division c 100.0 2E-38 7E-43 292.7 41.5 301 110-473 7-317 (318)
38 4aez_A CDC20, WD repeat-contai 100.0 1.7E-39 5.9E-44 309.9 35.2 304 110-479 75-388 (401)
39 3i2n_A WD repeat-containing pr 100.0 3.8E-40 1.3E-44 309.4 30.2 297 119-473 13-355 (357)
40 3ow8_A WD repeat-containing pr 100.0 2.5E-39 8.5E-44 298.5 34.2 251 164-473 27-281 (321)
41 2pm9_A Protein WEB1, protein t 100.0 1.5E-40 5.2E-45 319.0 25.0 297 124-476 12-342 (416)
42 1gxr_A ESG1, transducin-like e 100.0 4E-39 1.4E-43 299.9 33.7 291 123-475 8-300 (337)
43 4gqb_B Methylosome protein 50; 100.0 7.3E-39 2.5E-43 297.5 33.2 249 121-431 79-333 (344)
44 3dwl_C Actin-related protein 2 100.0 1.1E-40 3.8E-45 315.7 21.0 297 119-469 6-377 (377)
45 4g56_B MGC81050 protein; prote 100.0 3.5E-39 1.2E-43 302.1 29.1 283 128-474 9-304 (357)
46 3vl1_A 26S proteasome regulato 100.0 3.6E-38 1.2E-42 302.9 36.6 292 117-471 91-419 (420)
47 2pm7_B Protein transport prote 100.0 4.1E-38 1.4E-42 287.4 34.3 260 119-472 4-286 (297)
48 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-38 1.5E-42 342.4 39.8 336 117-476 608-1039(1249)
49 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-38 5.4E-43 330.8 34.0 204 120-350 13-245 (902)
50 1got_B GT-beta; complex (GTP-b 100.0 1.7E-37 5.7E-42 289.1 36.5 248 164-473 50-303 (340)
51 3dw8_B Serine/threonine-protei 100.0 3.8E-38 1.3E-42 305.4 33.4 310 122-469 26-444 (447)
52 3mkq_A Coatomer beta'-subunit; 100.0 6.3E-38 2.2E-42 326.8 37.5 294 117-473 6-304 (814)
53 3vl1_A 26S proteasome regulato 100.0 6E-39 2E-43 308.4 27.2 283 126-474 58-368 (420)
54 3f3f_A Nucleoporin SEH1; struc 100.0 2.7E-38 9.2E-43 295.6 30.1 311 117-474 4-340 (351)
55 1pgu_A Actin interacting prote 100.0 2E-37 7E-42 312.7 38.7 335 115-473 54-574 (615)
56 1yfq_A Cell cycle arrest prote 100.0 5.6E-38 1.9E-42 292.9 30.9 296 120-469 7-322 (342)
57 2j04_B YDR362CP, TAU91; beta p 100.0 6.1E-39 2.1E-43 312.7 24.3 294 120-473 203-519 (524)
58 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-37 5.2E-42 289.9 32.8 258 164-474 10-286 (345)
59 1p22_A F-BOX/WD-repeat protein 100.0 3.4E-37 1.2E-41 297.3 35.5 284 121-482 130-425 (435)
60 3v7d_B Cell division control p 100.0 1.9E-36 6.4E-41 294.9 40.3 285 118-475 115-425 (464)
61 3mmy_A MRNA export factor; mRN 100.0 3.7E-37 1.3E-41 290.2 33.2 305 112-473 27-348 (368)
62 3frx_A Guanine nucleotide-bind 100.0 1.6E-36 5.4E-41 279.8 35.7 256 158-472 6-268 (319)
63 4ery_A WD repeat-containing pr 100.0 1.3E-36 4.4E-41 279.9 34.5 252 163-474 17-271 (312)
64 1erj_A Transcriptional repress 100.0 1.3E-36 4.5E-41 288.8 35.3 250 123-429 122-389 (393)
65 3bg1_A Protein SEC13 homolog; 100.0 6.8E-38 2.3E-42 288.5 24.7 213 119-347 8-247 (316)
66 2pbi_B Guanine nucleotide-bind 100.0 3.1E-36 1.1E-40 281.8 35.9 248 165-473 60-317 (354)
67 3iz6_a 40S ribosomal protein R 100.0 1.1E-37 3.8E-42 294.9 26.0 251 164-473 61-331 (380)
68 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-35 3.6E-40 287.9 39.1 282 116-474 110-394 (445)
69 3sfz_A APAF-1, apoptotic pepti 100.0 7E-37 2.4E-41 333.0 34.4 358 110-476 685-1163(1249)
70 2hes_X YDR267CP; beta-propelle 100.0 1.6E-36 5.5E-41 281.1 31.6 255 164-472 9-281 (330)
71 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-35 6.1E-40 286.3 39.2 287 113-473 148-444 (445)
72 1pgu_A Actin interacting prote 100.0 3.9E-36 1.3E-40 303.3 35.5 301 115-471 194-614 (615)
73 2oaj_A Protein SNI1; WD40 repe 100.0 4.7E-36 1.6E-40 312.2 36.2 209 121-345 55-310 (902)
74 3v7d_B Cell division control p 100.0 2.9E-35 1E-39 286.5 37.7 303 110-468 148-460 (464)
75 2xzm_R RACK1; ribosome, transl 100.0 4.8E-35 1.7E-39 272.9 36.3 254 163-474 15-288 (343)
76 3jrp_A Fusion protein of prote 100.0 3.6E-35 1.2E-39 277.8 35.1 263 117-429 4-287 (379)
77 3mkq_A Coatomer beta'-subunit; 100.0 9.1E-36 3.1E-40 310.5 31.7 214 115-351 46-263 (814)
78 3gre_A Serine/threonine-protei 100.0 4.4E-36 1.5E-40 289.9 25.5 281 131-475 34-363 (437)
79 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-34 4.7E-39 280.3 34.4 311 124-472 4-392 (450)
80 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-36 8E-41 294.5 21.9 270 122-472 131-429 (524)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-35 3.5E-40 284.0 25.6 293 126-473 36-344 (402)
82 2xyi_A Probable histone-bindin 100.0 1.2E-34 4E-39 278.8 30.3 262 165-472 124-411 (430)
83 2j04_A TAU60, YPL007P, hypothe 100.0 2E-35 6.8E-40 280.5 23.0 269 122-470 13-296 (588)
84 3jrp_A Fusion protein of prote 100.0 2.7E-34 9.3E-39 271.8 30.5 255 164-471 6-287 (379)
85 3vu4_A KMHSV2; beta-propeller 100.0 5.9E-34 2E-38 266.5 31.2 287 119-477 14-342 (355)
86 3dwl_C Actin-related protein 2 100.0 2.1E-35 7.1E-40 279.5 17.9 264 168-471 10-281 (377)
87 1k8k_C P40, ARP2/3 complex 41 100.0 7.5E-34 2.6E-38 268.2 28.2 267 167-471 6-274 (372)
88 3dm0_A Maltose-binding peripla 100.0 4.1E-33 1.4E-37 284.7 35.4 252 164-473 377-634 (694)
89 3jro_A Fusion protein of prote 100.0 4.7E-34 1.6E-38 293.2 28.5 264 118-473 3-287 (753)
90 3lrv_A PRE-mRNA-splicing facto 100.0 2.4E-34 8.3E-39 268.2 23.8 284 129-471 41-333 (343)
91 1r5m_A SIR4-interacting protei 100.0 4.3E-33 1.5E-37 267.7 33.1 300 147-473 26-363 (425)
92 4aez_A CDC20, WD repeat-contai 100.0 3.9E-33 1.3E-37 265.9 32.5 250 123-436 133-387 (401)
93 1sq9_A Antiviral protein SKI8; 100.0 1.1E-33 3.9E-38 269.5 27.8 262 117-431 55-397 (397)
94 4aow_A Guanine nucleotide-bind 100.0 2.4E-32 8.2E-37 254.5 36.2 267 148-472 18-287 (340)
95 4gq1_A NUP37; propeller, trans 100.0 1.6E-33 5.5E-38 267.4 28.1 263 176-470 96-388 (393)
96 3zwl_B Eukaryotic translation 100.0 1.4E-32 4.9E-37 258.9 33.2 267 113-434 63-351 (369)
97 3dw8_B Serine/threonine-protei 100.0 2.8E-33 9.5E-38 271.1 26.7 267 167-474 26-376 (447)
98 3k26_A Polycomb protein EED; W 100.0 3.7E-33 1.3E-37 262.7 26.4 277 165-474 14-321 (366)
99 4e54_B DNA damage-binding prot 100.0 9E-33 3.1E-37 266.2 28.6 251 167-474 117-390 (435)
100 3i2n_A WD repeat-containing pr 100.0 7.9E-33 2.7E-37 259.5 27.2 250 166-475 15-295 (357)
101 3ei3_B DNA damage-binding prot 100.0 3.7E-32 1.2E-36 257.7 31.8 245 121-429 115-382 (383)
102 3odt_A Protein DOA1; ubiquitin 100.0 6.7E-32 2.3E-36 248.3 32.4 241 164-474 13-258 (313)
103 4gga_A P55CDC, cell division c 100.0 9.4E-32 3.2E-36 257.9 34.6 265 119-448 142-414 (420)
104 2j04_A TAU60, YPL007P, hypothe 100.0 8.2E-34 2.8E-38 269.5 19.8 255 122-460 83-350 (588)
105 1yfq_A Cell cycle arrest prote 100.0 2.1E-32 7E-37 255.2 28.9 253 165-474 7-285 (342)
106 4h5i_A Guanine nucleotide-exch 100.0 2.8E-33 9.5E-38 262.8 22.1 250 119-429 68-343 (365)
107 2w18_A PALB2, fancn, partner a 100.0 1.7E-31 5.7E-36 238.3 31.7 281 126-469 41-355 (356)
108 3bws_A Protein LP49; two-domai 100.0 2E-31 7E-36 256.9 34.3 282 125-471 123-432 (433)
109 2pm7_B Protein transport prote 100.0 9.5E-32 3.2E-36 245.2 28.3 213 224-472 6-239 (297)
110 2xyi_A Probable histone-bindin 100.0 1.1E-31 3.8E-36 258.1 26.7 274 119-430 123-411 (430)
111 1l0q_A Surface layer protein; 100.0 5.4E-30 1.8E-34 243.5 37.4 267 137-473 3-277 (391)
112 2aq5_A Coronin-1A; WD40 repeat 100.0 7.3E-31 2.5E-35 250.4 29.4 247 171-473 36-301 (402)
113 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-30 8.4E-35 249.3 32.8 238 166-473 130-367 (435)
114 4a11_B DNA excision repair pro 100.0 3.7E-30 1.3E-34 245.9 33.4 283 121-471 96-405 (408)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.1E-30 7E-35 251.0 29.3 256 171-469 6-337 (450)
116 1l0q_A Surface layer protein; 100.0 2.9E-29 9.9E-34 238.5 36.4 285 120-474 28-345 (391)
117 3mmy_A MRNA export factor; mRN 100.0 1E-29 3.5E-34 239.3 32.1 253 164-474 34-307 (368)
118 4ggc_A P55CDC, cell division c 100.0 6.6E-29 2.3E-33 228.9 33.9 248 119-431 62-317 (318)
119 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-29 4.4E-34 237.0 29.4 263 150-473 3-273 (355)
120 3bg1_A Protein SEC13 homolog; 100.0 9E-31 3.1E-35 240.9 20.4 216 118-347 51-293 (316)
121 4gq1_A NUP37; propeller, trans 100.0 1.1E-30 3.7E-35 247.9 20.1 247 120-427 85-387 (393)
122 3lrv_A PRE-mRNA-splicing facto 100.0 3.8E-30 1.3E-34 239.8 22.9 234 175-474 42-295 (343)
123 3bws_A Protein LP49; two-domai 100.0 8.8E-29 3E-33 238.5 28.0 287 124-473 60-392 (433)
124 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.9E-28 6.4E-33 233.8 27.8 296 124-487 62-403 (415)
125 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-28 6.4E-33 228.6 27.3 228 118-349 51-339 (351)
126 3jro_A Fusion protein of prote 100.0 1.4E-28 4.8E-33 252.5 25.2 216 117-348 46-286 (753)
127 1nir_A Nitrite reductase; hemo 100.0 3.4E-27 1.2E-31 231.8 31.8 282 131-475 144-462 (543)
128 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.7E-32 213.8 21.2 199 124-345 111-355 (356)
129 2ecf_A Dipeptidyl peptidase IV 100.0 8.1E-27 2.8E-31 240.4 30.6 286 124-472 36-414 (741)
130 2hqs_A Protein TOLB; TOLB, PAL 100.0 9E-26 3.1E-30 215.3 30.2 263 120-453 113-410 (415)
131 1nir_A Nitrite reductase; hemo 99.9 6.9E-25 2.3E-29 215.5 35.5 299 127-475 181-518 (543)
132 3u4y_A Uncharacterized protein 99.9 3.4E-24 1.2E-28 198.6 35.1 280 130-473 3-306 (331)
133 3vgz_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 200.3 35.2 281 123-462 39-335 (353)
134 1ri6_A Putative isomerase YBHE 99.9 4.3E-25 1.5E-29 205.6 28.1 282 138-471 7-308 (343)
135 2ojh_A Uncharacterized protein 99.9 2.5E-25 8.6E-30 202.4 25.5 257 141-462 17-293 (297)
136 1xfd_A DIP, dipeptidyl aminope 99.9 2.3E-26 7.7E-31 236.4 20.2 288 126-473 18-395 (723)
137 1k32_A Tricorn protease; prote 99.9 1.9E-24 6.4E-29 230.2 31.3 305 114-473 42-463 (1045)
138 2z3z_A Dipeptidyl aminopeptida 99.9 6.6E-24 2.3E-28 217.4 29.2 293 125-473 82-437 (706)
139 1pby_B Quinohemoprotein amine 99.9 4E-23 1.4E-27 191.7 29.3 274 137-473 2-312 (337)
140 3o4h_A Acylamino-acid-releasin 99.9 1.3E-23 4.5E-28 210.0 27.9 276 124-471 21-315 (582)
141 3hfq_A Uncharacterized protein 99.9 5.7E-23 1.9E-27 191.7 28.4 276 145-471 15-317 (347)
142 1k32_A Tricorn protease; prote 99.9 4.4E-23 1.5E-27 219.7 30.9 304 123-473 294-639 (1045)
143 1xfd_A DIP, dipeptidyl aminope 99.9 1.8E-23 6.3E-28 214.7 26.1 290 118-459 51-428 (723)
144 2z3z_A Dipeptidyl aminopeptida 99.9 2.5E-23 8.4E-28 213.1 25.7 283 127-473 28-393 (706)
145 2ecf_A Dipeptidyl peptidase IV 99.9 1.9E-23 6.5E-28 215.2 24.0 293 125-471 109-459 (741)
146 1ri6_A Putative isomerase YBHE 99.9 3.2E-22 1.1E-26 186.0 29.6 277 122-453 35-335 (343)
147 3pe7_A Oligogalacturonate lyas 99.9 2.1E-22 7.3E-27 190.8 27.1 292 118-471 24-382 (388)
148 2ojh_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 181.7 25.9 241 117-420 34-293 (297)
149 1jmx_B Amine dehydrogenase; ox 99.9 6.2E-22 2.1E-26 184.6 25.6 282 129-473 4-327 (349)
150 2oit_A Nucleoporin 214KDA; NH2 99.9 1.9E-21 6.6E-26 185.9 29.0 213 124-348 36-279 (434)
151 3u4y_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 177.9 29.7 271 122-452 38-326 (331)
152 1z68_A Fibroblast activation p 99.9 7.2E-23 2.5E-27 210.1 19.0 282 129-471 20-391 (719)
153 3scy_A Hypothetical bacterial 99.9 4.2E-21 1.4E-25 180.0 29.5 281 135-471 12-337 (361)
154 3vgz_A Uncharacterized protein 99.9 2.1E-21 7.2E-26 181.4 27.0 243 171-473 42-305 (353)
155 3hfq_A Uncharacterized protein 99.9 1.2E-20 4.1E-25 175.9 28.2 266 123-433 38-323 (347)
156 3scy_A Hypothetical bacterial 99.9 2.1E-19 7.3E-24 168.4 35.2 281 123-449 48-360 (361)
157 3o4h_A Acylamino-acid-releasin 99.9 1.4E-21 4.6E-26 195.5 20.8 234 169-469 21-274 (582)
158 1pby_B Quinohemoprotein amine 99.9 6.1E-21 2.1E-25 176.9 23.8 247 126-440 35-321 (337)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 2E-20 6.9E-25 175.5 27.0 288 138-472 4-342 (365)
160 1z68_A Fibroblast activation p 99.9 3E-21 1E-25 198.1 19.8 289 126-473 61-445 (719)
161 2oit_A Nucleoporin 214KDA; NH2 99.9 9.7E-21 3.3E-25 181.0 21.1 170 171-346 38-222 (434)
162 3c5m_A Oligogalacturonate lyas 99.9 1.9E-20 6.5E-25 177.8 21.3 291 126-470 37-381 (396)
163 4a5s_A Dipeptidyl peptidase 4 99.9 5.4E-20 1.9E-24 188.8 24.6 285 125-474 17-356 (740)
164 2oiz_A Aromatic amine dehydrog 99.8 7.5E-19 2.6E-23 164.0 24.9 282 135-472 14-335 (361)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1E-17 3.6E-22 156.9 29.7 249 125-430 40-342 (365)
166 1jmx_B Amine dehydrogenase; ox 99.8 4.1E-18 1.4E-22 158.7 25.9 240 126-439 44-335 (349)
167 3fvz_A Peptidyl-glycine alpha- 99.8 7.4E-18 2.5E-22 155.5 26.6 246 170-473 24-324 (329)
168 3azo_A Aminopeptidase; POP fam 99.8 2.3E-18 7.7E-23 175.0 24.7 299 118-472 17-370 (662)
169 2oiz_A Aromatic amine dehydrog 99.8 7.6E-18 2.6E-22 157.1 25.6 260 129-453 54-360 (361)
170 2gop_A Trilobed protease; beta 99.8 2.5E-17 8.4E-22 153.4 29.0 259 125-470 15-330 (347)
171 1q7f_A NHL, brain tumor CG1071 99.8 9.4E-17 3.2E-21 145.1 31.2 246 168-472 28-281 (286)
172 1q7f_A NHL, brain tumor CG1071 99.8 1.5E-16 5.2E-21 143.7 31.6 246 121-430 26-281 (286)
173 2dg1_A DRP35, lactonase; beta 99.8 2.3E-17 7.8E-22 152.7 26.5 276 124-461 5-300 (333)
174 3azo_A Aminopeptidase; POP fam 99.8 5.2E-17 1.8E-21 164.9 29.3 280 129-470 81-410 (662)
175 4a5s_A Dipeptidyl peptidase 4 99.8 4.4E-17 1.5E-21 167.2 28.5 286 127-472 64-450 (740)
176 3pe7_A Oligogalacturonate lyas 99.8 2.7E-17 9.2E-22 155.6 23.7 260 150-473 14-331 (388)
177 2xdw_A Prolyl endopeptidase; a 99.8 3.3E-16 1.1E-20 160.0 31.3 284 134-473 81-416 (710)
178 3fvz_A Peptidyl-glycine alpha- 99.8 7E-16 2.4E-20 142.2 29.2 256 123-428 22-321 (329)
179 1qks_A Cytochrome CD1 nitrite 99.8 5.5E-15 1.9E-19 144.7 34.5 278 134-472 165-478 (567)
180 2z2n_A Virginiamycin B lyase; 99.7 3.1E-14 1.1E-18 129.2 37.5 282 122-472 12-296 (299)
181 2xdw_A Prolyl endopeptidase; a 99.7 1.5E-15 5E-20 155.3 31.1 248 122-431 122-416 (710)
182 2bkl_A Prolyl endopeptidase; m 99.7 3.7E-16 1.3E-20 159.2 25.9 279 134-473 77-399 (695)
183 3e5z_A Putative gluconolactona 99.7 5.9E-15 2E-19 133.9 28.7 249 117-432 20-289 (296)
184 2bkl_A Prolyl endopeptidase; m 99.7 9.4E-16 3.2E-20 156.2 23.3 250 122-432 118-400 (695)
185 3c5m_A Oligogalacturonate lyas 99.7 4.7E-16 1.6E-20 147.4 18.4 261 149-473 13-331 (396)
186 2mad_H Methylamine dehydrogena 99.7 7.3E-14 2.5E-18 130.2 32.8 290 131-477 27-356 (373)
187 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-13 9.9E-18 132.6 37.5 302 124-474 196-541 (567)
188 3e5z_A Putative gluconolactona 99.7 1.2E-14 4.1E-19 131.9 25.5 235 171-471 29-286 (296)
189 2qc5_A Streptogramin B lactona 99.7 5.8E-13 2E-17 120.8 36.6 278 123-469 18-298 (300)
190 1rwi_B Serine/threonine-protei 99.7 7.8E-15 2.7E-19 131.1 23.5 242 171-474 25-267 (270)
191 2gop_A Trilobed protease; beta 99.7 8.4E-15 2.9E-19 136.2 24.2 218 171-470 16-290 (347)
192 3no2_A Uncharacterized protein 99.7 3.8E-14 1.3E-18 126.4 27.1 186 135-348 4-196 (276)
193 3no2_A Uncharacterized protein 99.7 2.2E-14 7.7E-19 128.0 25.0 214 180-459 4-231 (276)
194 3sjl_D Methylamine dehydrogena 99.7 9.3E-14 3.2E-18 127.6 28.5 291 130-474 38-366 (386)
195 3dsm_A Uncharacterized protein 99.7 5.3E-14 1.8E-18 129.4 27.0 260 144-470 15-301 (328)
196 2dg1_A DRP35, lactonase; beta 99.7 1.1E-13 3.9E-18 127.7 29.3 205 119-346 39-262 (333)
197 1rwi_B Serine/threonine-protei 99.7 2.4E-14 8.4E-19 127.9 23.9 241 126-431 25-266 (270)
198 1yr2_A Prolyl oligopeptidase; 99.7 2.6E-14 8.9E-19 146.6 25.6 277 133-473 115-443 (741)
199 3c75_H MADH, methylamine dehyd 99.6 1.1E-13 3.9E-18 129.4 26.0 290 134-475 82-406 (426)
200 1yr2_A Prolyl oligopeptidase; 99.6 9E-14 3.1E-18 142.6 25.7 202 123-346 161-392 (741)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.7E-13 1.6E-17 122.4 26.5 248 171-473 19-301 (314)
202 2z2n_A Virginiamycin B lyase; 99.6 7.3E-12 2.5E-16 113.4 32.9 237 170-470 15-254 (299)
203 3sjl_D Methylamine dehydrogena 99.6 9.4E-13 3.2E-17 121.0 26.4 258 130-451 83-384 (386)
204 3dsm_A Uncharacterized protein 99.6 1.4E-12 4.8E-17 119.8 26.8 248 125-437 44-309 (328)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 8.5E-12 2.9E-16 114.0 30.1 205 124-347 17-256 (314)
206 3hrp_A Uncharacterized protein 99.5 3.1E-12 1.1E-16 120.9 26.2 201 124-347 130-354 (409)
207 3iuj_A Prolyl endopeptidase; h 99.5 2.4E-12 8.2E-17 130.8 27.2 202 122-347 126-359 (693)
208 3g4e_A Regucalcin; six bladed 99.5 6E-12 2.1E-16 114.0 27.0 229 171-459 14-260 (297)
209 2mad_H Methylamine dehydrogena 99.5 5.5E-11 1.9E-15 110.8 32.8 242 129-436 70-357 (373)
210 3hrp_A Uncharacterized protein 99.5 2.5E-12 8.4E-17 121.6 23.4 239 171-469 132-408 (409)
211 2qc5_A Streptogramin B lactona 99.5 2.4E-10 8.1E-15 103.4 33.8 237 170-470 20-259 (300)
212 2qe8_A Uncharacterized protein 99.5 2.8E-12 9.6E-17 118.7 20.0 284 125-468 17-318 (343)
213 1mda_H Methylamine dehydrogena 99.5 5.9E-12 2E-16 116.0 19.9 270 147-475 47-350 (368)
214 1xip_A Nucleoporin NUP159; bet 99.4 2.2E-12 7.4E-17 119.1 16.7 172 229-458 39-231 (388)
215 3iuj_A Prolyl endopeptidase; h 99.4 2.2E-11 7.7E-16 123.6 25.2 242 168-473 127-407 (693)
216 1xip_A Nucleoporin NUP159; bet 99.4 2.2E-12 7.4E-17 119.1 16.0 174 126-334 39-231 (388)
217 3c75_H MADH, methylamine dehyd 99.4 3.4E-11 1.2E-15 112.8 23.8 244 129-436 122-409 (426)
218 3g4e_A Regucalcin; six bladed 99.4 1.4E-10 4.8E-15 104.9 27.3 199 125-347 13-229 (297)
219 3dr2_A Exported gluconolactona 99.4 4.2E-11 1.4E-15 108.8 23.5 227 171-465 46-301 (305)
220 3dr2_A Exported gluconolactona 99.4 8.3E-11 2.8E-15 106.9 25.5 204 117-347 37-267 (305)
221 2ghs_A AGR_C_1268P; regucalcin 99.4 7.6E-10 2.6E-14 101.4 31.6 227 172-460 51-291 (326)
222 2ghs_A AGR_C_1268P; regucalcin 99.4 9.9E-10 3.4E-14 100.7 29.7 198 126-346 50-259 (326)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.2E-09 1.4E-13 98.7 31.5 268 135-474 52-340 (376)
224 2qe8_A Uncharacterized protein 99.3 6.5E-11 2.2E-15 109.5 15.3 231 171-469 18-276 (343)
225 1yiq_A Quinohemoprotein alcoho 99.3 6.4E-10 2.2E-14 112.2 23.6 311 136-475 70-509 (689)
226 1kb0_A Quinohemoprotein alcoho 99.3 9.1E-10 3.1E-14 110.9 24.5 310 136-475 77-511 (677)
227 1mda_H Methylamine dehydrogena 99.3 9.4E-11 3.2E-15 108.0 15.5 249 129-450 69-366 (368)
228 2hz6_A Endoplasmic reticulum t 99.3 6.1E-12 2.1E-16 117.4 7.4 203 180-453 8-216 (369)
229 1kb0_A Quinohemoprotein alcoho 99.2 2.3E-09 7.8E-14 108.0 25.9 327 135-471 127-567 (677)
230 1yiq_A Quinohemoprotein alcoho 99.2 1.5E-09 5E-14 109.6 24.5 305 135-458 120-536 (689)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5E-08 1.7E-12 91.3 32.9 262 135-468 102-375 (376)
232 2ece_A 462AA long hypothetical 99.2 3.1E-08 1.1E-12 91.6 29.9 247 177-459 89-399 (462)
233 2ece_A 462AA long hypothetical 99.2 5.1E-09 1.7E-13 96.9 23.1 200 131-347 88-352 (462)
234 2hz6_A Endoplasmic reticulum t 99.2 1.3E-11 4.3E-16 115.3 4.8 183 238-474 8-195 (369)
235 1fwx_A Nitrous oxide reductase 99.2 4.6E-09 1.6E-13 100.7 22.1 285 139-472 18-432 (595)
236 3hxj_A Pyrrolo-quinoline quino 99.1 3.2E-09 1.1E-13 97.5 18.0 268 124-473 59-326 (330)
237 3hxj_A Pyrrolo-quinoline quino 99.1 1E-08 3.5E-13 94.0 19.9 260 128-469 23-282 (330)
238 1fwx_A Nitrous oxide reductase 99.0 6E-08 2.1E-12 93.0 23.5 251 134-431 99-433 (595)
239 1npe_A Nidogen, entactin; glyc 99.0 1.4E-06 4.8E-11 77.1 31.2 251 136-453 1-263 (267)
240 2iwa_A Glutamine cyclotransfer 99.0 2.9E-07 9.8E-12 80.0 24.3 194 127-348 23-238 (266)
241 1k3i_A Galactose oxidase precu 99.0 2.4E-08 8.2E-13 100.7 19.7 275 129-460 190-530 (656)
242 1kv9_A Type II quinohemoprotei 99.0 2E-07 6.7E-12 93.8 25.4 307 136-474 66-491 (668)
243 4a2l_A BT_4663, two-component 98.9 5E-06 1.7E-10 85.9 34.4 289 124-472 214-527 (795)
244 2iwa_A Glutamine cyclotransfer 98.9 3.8E-07 1.3E-11 79.3 21.7 199 230-473 23-239 (266)
245 2fp8_A Strictosidine synthase; 98.9 2E-06 6.8E-11 78.4 27.0 201 127-346 21-268 (322)
246 2ad6_A Methanol dehydrogenase 98.9 6.3E-07 2.2E-11 88.2 25.0 310 136-474 62-497 (571)
247 1w6s_A Methanol dehydrogenase 98.9 9.5E-07 3.2E-11 86.9 26.1 199 136-353 62-348 (599)
248 3qqz_A Putative uncharacterize 98.9 5E-06 1.7E-10 71.8 27.5 210 119-344 21-250 (255)
249 1kv9_A Type II quinohemoprotei 98.9 3.7E-07 1.3E-11 91.9 23.5 166 136-309 117-337 (668)
250 4a2l_A BT_4663, two-component 98.9 8.1E-06 2.8E-10 84.4 34.2 286 127-472 175-481 (795)
251 2fp8_A Strictosidine synthase; 98.9 5.9E-07 2E-11 82.0 23.0 253 171-473 20-315 (322)
252 3nol_A Glutamine cyclotransfer 98.9 3.5E-07 1.2E-11 78.5 19.2 181 127-337 45-245 (262)
253 1npe_A Nidogen, entactin; glyc 98.8 1.2E-05 3.9E-10 71.1 29.0 232 182-473 2-240 (267)
254 1w6s_A Methanol dehydrogenase 98.8 6.1E-06 2.1E-10 81.2 28.9 317 130-458 111-534 (599)
255 2ad6_A Methanol dehydrogenase 98.8 2.3E-06 7.8E-11 84.3 26.0 304 136-457 115-523 (571)
256 2p4o_A Hypothetical protein; p 98.8 1.1E-05 3.6E-10 73.0 27.9 228 171-462 33-279 (306)
257 2p4o_A Hypothetical protein; p 98.8 1.3E-05 4.3E-10 72.5 28.4 198 125-346 32-241 (306)
258 3nol_A Glutamine cyclotransfer 98.8 1.9E-06 6.6E-11 73.9 21.2 182 230-460 45-244 (262)
259 3nok_A Glutaminyl cyclase; bet 98.7 1.9E-06 6.6E-11 73.8 20.2 179 230-459 57-253 (268)
260 2xe4_A Oligopeptidase B; hydro 98.7 2E-06 7E-11 87.9 23.6 196 126-345 175-398 (751)
261 1flg_A Protein (quinoprotein e 98.7 3E-05 1E-09 76.4 31.1 202 137-354 69-362 (582)
262 3mbr_X Glutamine cyclotransfer 98.7 7.2E-06 2.5E-10 69.7 22.4 183 125-336 21-223 (243)
263 3v9f_A Two-component system se 98.7 4E-05 1.4E-09 79.0 32.2 293 124-472 257-569 (781)
264 1flg_A Protein (quinoprotein e 98.7 3E-05 1E-09 76.4 28.9 170 136-310 117-360 (582)
265 3v9f_A Two-component system se 98.7 7.5E-05 2.6E-09 77.0 33.2 291 124-471 210-524 (781)
266 3mbr_X Glutamine cyclotransfer 98.7 1.2E-05 4E-10 68.4 22.1 183 229-460 22-223 (243)
267 3nok_A Glutaminyl cyclase; bet 98.6 3.9E-06 1.3E-10 72.0 18.9 179 127-336 57-254 (268)
268 3v64_C Agrin; beta propeller, 98.6 0.00018 6E-09 66.1 31.2 197 124-347 33-234 (349)
269 2xe4_A Oligopeptidase B; hydro 98.6 2.5E-05 8.6E-10 79.8 27.6 155 171-346 175-353 (751)
270 1k3i_A Galactose oxidase precu 98.6 2.7E-06 9.2E-11 85.7 19.4 113 174-300 190-322 (656)
271 3tc9_A Hypothetical hydrolase; 98.6 2.1E-05 7.3E-10 74.5 24.3 154 126-300 138-300 (430)
272 2xbg_A YCF48-like protein; pho 98.6 0.00042 1.4E-08 63.0 32.9 279 124-469 35-320 (327)
273 3tc9_A Hypothetical hydrolase; 98.5 1.4E-05 4.8E-10 75.7 22.1 154 171-347 138-301 (430)
274 1ijq_A LDL receptor, low-densi 98.5 0.00067 2.3E-08 61.3 31.5 184 138-347 3-195 (316)
275 2xzh_A Clathrin heavy chain 1; 98.5 0.00038 1.3E-08 61.1 27.2 267 145-472 48-333 (365)
276 3v65_B Low-density lipoprotein 98.5 0.00025 8.7E-09 66.1 28.0 195 126-347 78-277 (386)
277 4hw6_A Hypothetical protein, I 98.5 9.8E-05 3.4E-09 69.9 25.2 155 171-347 140-304 (433)
278 3v64_C Agrin; beta propeller, 98.4 0.00042 1.4E-08 63.6 28.8 199 229-472 74-276 (349)
279 3qqz_A Putative uncharacterize 98.4 0.00017 6E-09 62.2 24.3 201 229-468 28-250 (255)
280 1ijq_A LDL receptor, low-densi 98.4 0.00099 3.4E-08 60.2 30.0 227 183-473 3-240 (316)
281 3v65_B Low-density lipoprotein 98.4 0.00017 6E-09 67.2 25.4 227 183-472 89-319 (386)
282 4hw6_A Hypothetical protein, I 98.4 0.00014 4.9E-09 68.8 24.9 198 126-345 140-372 (433)
283 3p5b_L Low density lipoprotein 98.4 0.0014 4.8E-08 61.3 31.0 188 137-347 84-277 (400)
284 1bpo_A Protein (clathrin); cla 98.4 0.0014 4.7E-08 60.1 29.0 267 145-472 47-332 (494)
285 3kya_A Putative phosphatase; s 98.4 0.00021 7E-09 67.9 24.5 158 126-300 140-340 (496)
286 3sov_A LRP-6, low-density lipo 98.3 0.0012 4.2E-08 59.5 28.8 187 138-347 6-197 (318)
287 2p9w_A MAL S 1 allergenic prot 98.2 0.00088 3E-08 59.5 23.5 167 128-300 16-214 (334)
288 3sov_A LRP-6, low-density lipo 98.2 0.0027 9.4E-08 57.2 27.3 229 183-473 6-240 (318)
289 3p5b_L Low density lipoprotein 98.2 0.0044 1.5E-07 57.9 29.5 228 183-473 85-322 (400)
290 3s94_A LRP-6, low-density lipo 98.2 0.0061 2.1E-07 60.4 31.6 205 124-351 39-247 (619)
291 3m0c_C LDL receptor, low-densi 98.1 0.0045 1.5E-07 63.0 30.2 187 138-347 397-589 (791)
292 3kya_A Putative phosphatase; s 98.1 0.0015 5.2E-08 62.0 24.5 161 171-346 140-340 (496)
293 1n7d_A LDL receptor, low-densi 98.0 6.4E-05 2.2E-09 75.8 13.9 178 145-347 385-571 (699)
294 3amr_A 3-phytase; beta-propell 98.0 0.0023 7.9E-08 57.4 21.3 193 238-470 39-262 (355)
295 2p9w_A MAL S 1 allergenic prot 97.9 0.00045 1.6E-08 61.3 16.6 162 171-347 14-215 (334)
296 3amr_A 3-phytase; beta-propell 97.9 0.0045 1.6E-07 55.5 22.5 192 135-346 39-262 (355)
297 2ism_A Putative oxidoreductase 97.9 0.01 3.5E-07 54.3 25.7 104 171-289 32-153 (352)
298 3m0c_C LDL receptor, low-densi 97.9 0.012 4E-07 60.0 27.3 197 229-472 425-633 (791)
299 4a0p_A LRP6, LRP-6, low-densit 97.8 0.029 1E-06 55.6 30.5 186 138-347 8-197 (628)
300 2ism_A Putative oxidoreductase 97.8 0.0058 2E-07 56.0 22.5 153 126-290 32-222 (352)
301 4a0p_A LRP6, LRP-6, low-densit 97.8 0.036 1.2E-06 55.0 29.6 226 183-473 8-239 (628)
302 2vpj_A Kelch-like protein 12; 97.8 0.0083 2.8E-07 53.6 22.7 188 135-347 14-231 (301)
303 2vpj_A Kelch-like protein 12; 97.8 0.0021 7E-08 57.6 18.6 146 180-347 14-184 (301)
304 3s94_A LRP-6, low-density lipo 97.8 0.017 5.7E-07 57.3 26.2 182 144-347 16-202 (619)
305 2xn4_A Kelch-like protein 2; s 97.7 0.0055 1.9E-07 54.8 19.9 188 135-347 15-229 (302)
306 3ei3_A DNA damage-binding prot 97.7 0.05 1.7E-06 57.9 29.8 184 239-468 844-1059(1158)
307 2xn4_A Kelch-like protein 2; s 97.7 0.0058 2E-07 54.7 19.9 230 181-472 16-277 (302)
308 3ei3_A DNA damage-binding prot 97.7 0.089 3E-06 56.1 35.7 194 123-337 552-757 (1158)
309 3ii7_A Kelch-like protein 7; p 97.7 0.007 2.4E-07 54.2 20.2 102 181-300 12-126 (306)
310 1n7d_A LDL receptor, low-densi 97.6 0.00031 1.1E-08 70.8 11.6 220 190-472 385-615 (699)
311 2xbg_A YCF48-like protein; pho 97.6 0.013 4.3E-07 53.1 21.1 192 125-345 122-320 (327)
312 3sre_A PON1, serum paraoxonase 97.6 0.0097 3.3E-07 54.1 20.0 199 128-344 53-295 (355)
313 3ii7_A Kelch-like protein 7; p 97.6 0.024 8.1E-07 50.7 22.4 186 137-347 13-225 (306)
314 1xi4_A Clathrin heavy chain; a 97.6 0.0045 1.5E-07 65.4 19.1 269 144-473 46-333 (1630)
315 1zgk_A Kelch-like ECH-associat 97.6 0.018 6.1E-07 51.6 21.5 190 133-347 22-240 (308)
316 4asc_A Kelch repeat and BTB do 97.5 0.016 5.6E-07 52.0 20.7 184 138-347 7-221 (315)
317 3a9g_A Putative uncharacterize 97.5 0.057 1.9E-06 49.4 28.4 252 171-459 30-330 (354)
318 3a9g_A Putative uncharacterize 97.5 0.058 2E-06 49.3 25.4 211 125-347 29-296 (354)
319 2g8s_A Glucose/sorbosone dehyd 97.5 0.061 2.1E-06 49.1 28.1 56 409-464 288-347 (353)
320 1bpo_A Protein (clathrin); cla 97.4 0.088 3E-06 48.4 26.9 219 191-474 48-292 (494)
321 4asc_A Kelch repeat and BTB do 97.3 0.028 9.7E-07 50.4 19.9 140 184-347 8-174 (315)
322 3pbp_A Nucleoporin NUP82; beta 97.3 0.012 4.2E-07 53.9 16.9 161 132-297 28-208 (452)
323 1zgk_A Kelch-like ECH-associat 97.3 0.017 5.7E-07 51.8 18.1 147 179-347 23-193 (308)
324 2xzh_A Clathrin heavy chain 1; 97.3 0.088 3E-06 46.5 29.0 219 191-474 49-293 (365)
325 3sre_A PON1, serum paraoxonase 97.3 0.04 1.4E-06 50.1 19.5 195 229-467 51-294 (355)
326 2woz_A Kelch repeat and BTB do 97.2 0.096 3.3E-06 47.0 21.4 184 138-347 18-231 (318)
327 2uvk_A YJHT; unknown function, 97.1 0.038 1.3E-06 50.6 18.0 146 135-299 19-224 (357)
328 2woz_A Kelch repeat and BTB do 97.0 0.079 2.7E-06 47.5 19.2 105 236-347 54-184 (318)
329 3sbq_A Nitrous-oxide reductase 96.9 0.13 4.3E-06 49.0 19.6 94 139-247 73-196 (638)
330 3s25_A Hypothetical 7-bladed b 96.9 0.21 7.2E-06 44.3 25.8 172 133-347 22-216 (302)
331 3s25_A Hypothetical 7-bladed b 96.8 0.21 7E-06 44.4 19.7 134 178-347 22-176 (302)
332 3pbp_A Nucleoporin NUP82; beta 96.8 0.022 7.6E-07 52.3 13.3 123 126-255 67-209 (452)
333 2uvk_A YJHT; unknown function, 96.8 0.072 2.5E-06 48.7 17.4 95 180-291 19-128 (357)
334 1cru_A Protein (soluble quinop 96.8 0.39 1.3E-05 45.5 30.8 111 171-290 28-163 (454)
335 2be1_A Serine/threonine-protei 96.7 0.31 1.1E-05 43.8 20.3 147 182-344 11-181 (339)
336 3das_A Putative oxidoreductase 96.3 0.58 2E-05 42.2 28.1 254 171-459 33-326 (347)
337 3das_A Putative oxidoreductase 96.3 0.25 8.6E-06 44.6 16.9 157 124-288 31-219 (347)
338 1xi4_A Clathrin heavy chain; a 96.3 0.28 9.5E-06 52.4 18.8 220 190-474 47-292 (1630)
339 1tl2_A L10, protein (tachylect 96.2 0.3 1E-05 40.5 15.4 156 171-346 42-207 (236)
340 3ott_A Two-component system se 96.2 1.3 4.5E-05 45.1 32.4 194 124-347 62-260 (758)
341 1tl2_A L10, protein (tachylect 96.1 0.34 1.1E-05 40.2 15.1 149 126-294 42-203 (236)
342 2zwa_A Leucine carboxyl methyl 96.0 0.49 1.7E-05 47.6 19.2 198 134-347 396-635 (695)
343 2be1_A Serine/threonine-protei 96.0 0.16 5.4E-06 45.7 13.9 194 137-351 11-235 (339)
344 3ott_A Two-component system se 95.9 1.8 6E-05 44.2 33.8 285 125-471 191-502 (758)
345 1cru_A Protein (soluble quinop 95.8 1.4 4.7E-05 41.7 26.6 115 125-246 27-162 (454)
346 2zwa_A Leucine carboxyl methyl 94.7 0.97 3.3E-05 45.5 16.4 152 135-300 451-634 (695)
347 2g8s_A Glucose/sorbosone dehyd 93.3 4.5 0.00015 36.6 23.0 66 270-339 271-346 (353)
348 2wg3_C Hedgehog-interacting pr 88.1 9.8 0.00033 35.9 13.8 30 317-346 14-44 (463)
349 3qhy_B Beta-lactamase inhibito 86.6 15 0.00052 31.8 16.7 183 126-347 64-246 (282)
350 3sbq_A Nitrous-oxide reductase 85.4 27 0.00092 33.6 20.9 76 270-347 323-408 (638)
351 3qhy_B Beta-lactamase inhibito 85.2 18 0.00062 31.3 21.5 144 171-347 25-168 (282)
352 3uc1_A DNA gyrase subunit A; D 84.9 21 0.0007 31.8 22.9 209 126-347 43-279 (327)
353 2wg3_C Hedgehog-interacting pr 84.1 28 0.00097 32.7 28.7 115 171-291 15-159 (463)
354 4gq2_M Nucleoporin NUP120; bet 82.2 30 0.001 36.2 15.3 39 124-162 235-273 (950)
355 3b7f_A Glycosyl hydrolase, BNR 80.2 35 0.0012 31.1 29.1 166 124-292 54-254 (394)
356 3uc1_A DNA gyrase subunit A; D 79.5 33 0.0011 30.4 22.5 168 125-300 95-278 (327)
357 3q6k_A 43.2 kDa salivary prote 78.9 38 0.0013 30.8 21.2 174 123-300 85-305 (381)
358 4gq2_M Nucleoporin NUP120; bet 78.9 34 0.0012 35.7 14.4 38 229-266 237-274 (950)
359 1suu_A DNA gyrase subunit A; t 78.1 35 0.0012 30.0 23.2 204 134-347 6-231 (312)
360 4hvt_A Ritya.17583.B, post-pro 77.0 64 0.0022 32.3 18.3 203 127-347 131-381 (711)
361 3no0_A DNA gyrase subunit A; D 74.3 42 0.0014 28.9 21.0 206 124-347 23-246 (276)
362 3b7f_A Glycosyl hydrolase, BNR 67.9 71 0.0024 29.0 30.5 194 137-343 23-258 (394)
363 3f7f_A Nucleoporin NUP120; nuc 66.8 50 0.0017 32.9 11.2 37 229-267 223-259 (729)
364 1wp5_A Topoisomerase IV; broke 65.8 72 0.0024 28.2 25.1 155 179-347 3-174 (323)
365 3f7f_A Nucleoporin NUP120; nuc 63.2 75 0.0026 31.6 11.7 37 171-209 223-259 (729)
366 3zwu_A Alkaline phosphatase PH 62.1 36 0.0012 33.1 9.3 58 128-187 479-548 (592)
367 1zi0_A DNA gyrase subunit A; b 62.0 82 0.0028 27.6 26.3 251 179-471 1-277 (307)
368 4hvt_A Ritya.17583.B, post-pro 60.1 1.4E+02 0.0049 29.8 26.1 61 410-470 360-429 (711)
369 1suu_A DNA gyrase subunit A; t 58.2 96 0.0033 27.2 26.6 159 179-347 6-181 (312)
370 1wp5_A Topoisomerase IV; broke 57.8 1E+02 0.0034 27.3 24.3 202 134-347 3-225 (323)
371 3kci_A Probable E3 ubiquitin-p 56.9 1.1E+02 0.0039 27.6 29.0 115 230-347 107-241 (389)
372 4fhn_B Nucleoporin NUP120; pro 56.3 21 0.00073 38.2 7.3 40 171-210 239-278 (1139)
373 3zwu_A Alkaline phosphatase PH 54.8 31 0.0011 33.6 7.5 60 171-245 477-548 (592)
374 1olz_A Semaphorin 4D; developm 54.7 93 0.0032 30.8 11.0 72 124-195 396-477 (663)
375 3l6v_A GYRA, DNA gyrase subuni 53.6 1.3E+02 0.0044 27.2 25.7 162 177-347 3-180 (370)
376 4fhn_B Nucleoporin NUP120; pro 53.5 13 0.00043 39.9 5.0 39 125-163 238-276 (1139)
377 3q6k_A 43.2 kDa salivary prote 52.7 1.3E+02 0.0046 27.2 20.5 91 250-345 124-251 (381)
378 3l6v_A GYRA, DNA gyrase subuni 52.3 1.3E+02 0.0046 27.1 24.5 212 124-347 45-316 (370)
379 4a9v_A PHOX; hydrolase, beta-p 51.3 52 0.0018 31.8 8.2 62 170-246 476-549 (592)
380 4a9v_A PHOX; hydrolase, beta-p 50.1 95 0.0032 30.0 9.7 62 125-188 476-549 (592)
381 3al9_A Plexin-A2; beta-propell 40.5 51 0.0017 31.7 6.5 71 125-195 400-476 (539)
382 3no0_A DNA gyrase subunit A; D 39.1 1.8E+02 0.0062 24.8 22.2 158 171-348 25-197 (276)
383 1zi0_A DNA gyrase subunit A; b 39.1 1.9E+02 0.0066 25.1 28.3 202 134-347 1-226 (307)
384 1sqj_A OXG-RCBH, oligoxylogluc 33.2 4E+02 0.014 27.0 17.0 155 170-337 15-190 (789)
385 3a0f_A Xyloglucanase; beta-pro 30.6 4.3E+02 0.015 26.6 21.2 64 123-187 19-93 (763)
386 1zvt_A Topoisomerase IV subuni 26.7 2.9E+02 0.0098 23.3 14.8 105 241-348 4-115 (256)
387 1q47_A Semaphorin 3A; beta pro 24.9 1.5E+02 0.0051 28.0 6.8 70 126-195 405-487 (495)
388 1q47_A Semaphorin 3A; beta pro 23.7 2.1E+02 0.0072 27.1 7.5 56 411-466 422-487 (495)
389 4gz8_A Semaphorin-3A; multi-do 23.3 2.5E+02 0.0085 27.8 8.1 56 411-466 430-495 (667)
390 4gz8_A Semaphorin-3A; multi-do 20.5 2.6E+02 0.0089 27.6 7.6 70 126-195 413-495 (667)
391 1sqj_A OXG-RCBH, oligoxylogluc 20.5 6.7E+02 0.023 25.3 24.5 159 124-291 14-190 (789)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-48 Score=372.46 Aligned_cols=290 Identities=22% Similarity=0.314 Sum_probs=259.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+.+|.++|++++|+|++++|++|+.||+|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 45788999999999999999999999999999999999885443 346788899999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
|+.+++..... .+|...|.+++|+|++++|++|+.|+.|++||+.++.++..+.+|...|.++.
T Consensus 178 d~~~~~~~~~~----------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~ 241 (410)
T 1vyh_C 178 DFQGFECIRTM----------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241 (410)
T ss_dssp ETTSSCEEECC----------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred eCCCCceeEEE----------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEE
Confidence 99887654332 25777999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC--------------------CCEEEEeeC
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--------------------GRYLISNGK 336 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~--------------------~~~l~~~~~ 336 (491)
++ +++.+|++|+.|+.|++||++ .......+.+|...|.+++|+|+ +.+|++|+.
T Consensus 242 ~~-~~g~~l~s~s~D~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~ 316 (410)
T 1vyh_C 242 PN-QDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316 (410)
T ss_dssp EC-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET
T ss_pred EC-CCCCEEEEEcCCCeEEEEECC----CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC
Confidence 97 889999999999999999998 77788889999999999999996 678999999
Q ss_pred CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEE
Q 011216 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 416 (491)
|+.|++||+++ +..+..+.+|.... .+.+|+|++++|++|
T Consensus 317 D~~i~iwd~~~----------------------------------~~~~~~~~~h~~~v------~~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 317 DKTIKMWDVST----------------------------------GMCLMTLVGHDNWV------RGVLFHSGGKFILSC 356 (410)
T ss_dssp TSEEEEEETTT----------------------------------TEEEEEEECCSSCE------EEEEECSSSSCEEEE
T ss_pred CCeEEEEECCC----------------------------------CceEEEEECCCCcE------EEEEEcCCCCEEEEE
Confidence 99999999987 35667777776322 233577799999999
Q ss_pred ecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 417 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|++|+++
T Consensus 357 s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 357 ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999863
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-48 Score=355.77 Aligned_cols=290 Identities=16% Similarity=0.265 Sum_probs=254.6
Q ss_pred cccCCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 119 PVDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~d----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
.+.+|.+.|++++|+|+ +.+|++|+.|++|+||++..+.. .......+|...|.+++|+|++.++++++.|++|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 44689999999999985 67999999999999999987643 22334578888999999999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
+||+.+++...... .|...+.+++|+|++++|++++.+|.|++||+.+++....+..|...|.+
T Consensus 106 lWd~~~~~~~~~~~----------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 106 LWDLENGKQIKSID----------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp EEETTTTEEEEEEE----------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred EEECCCCCEEEEEe----------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 99999887644332 13336788999999999999999999999999999998889899999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
++|+ +++++|++|+.||.|++||++ .++.+..+.+|..+|.+++|+|++++|++++.|+.|++||++.
T Consensus 170 ~~~s-pdg~~lasg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~------- 237 (321)
T 3ow8_A 170 IAYS-PDGKYLASGAIDGIINIFDIA----TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH------- 237 (321)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-------
T ss_pred EEEC-CCCCEEEEEcCCCeEEEEECC----CCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence 9998 889999999999999999998 7788889999999999999999999999999999999999987
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
...+..+.+|... +.+++|+|++++|++++.|+.|++||+.+++++.
T Consensus 238 ---------------------------~~~~~~~~~h~~~------v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 238 ---------------------------ANLAGTLSGHASW------VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp ---------------------------CCEEEEECCCSSC------EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------------------------cceeEEEcCCCCc------eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 3456667777632 2334677899999999999999999999999999
Q ss_pred EecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 285 ~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 285 TFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.4e-47 Score=355.65 Aligned_cols=294 Identities=19% Similarity=0.303 Sum_probs=253.1
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
....+.+|.+.|++++|+||+++|++|+.||+|++||+.++..+... ..|...|.+++|+|++++|++++.|+.|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI---PLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE---ECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe---ecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34578899999999999999999999999999999999988665543 456668999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
|++.++....... . ...+|...|.++.|++++. +++++.|+.|++||+.+++.+..+.+|...|.++
T Consensus 124 w~~~~~~~~~~~~--~----------~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 124 YNLKTREGNVRVS--R----------ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp EETTTCSBSCEEE--E----------EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EECccCCCcceeE--E----------EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEE
Confidence 9998754211110 0 0124777899999998875 8999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+|+ +++++|++|+.|+.|++||++ .+.....+.+|...|++++|+|++++|++++.|+.|++||++..
T Consensus 191 ~~~-~~~~~l~sg~~d~~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------- 258 (340)
T 1got_B 191 SLA-PDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------- 258 (340)
T ss_dssp EEC-TTSSEEEEEETTSCEEEEETT----TCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------
T ss_pred EEC-CCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-------
Confidence 998 788999999999999999998 77888899999999999999999999999999999999999873
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 435 (491)
+.+..+..+.....+ .+.+|+|++++|++|+.||.|++||+.+++.+..
T Consensus 259 ---------------------------~~~~~~~~~~~~~~v----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~ 307 (340)
T 1got_B 259 ---------------------------QELMTYSHDNIICGI----TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV 307 (340)
T ss_dssp ---------------------------EEEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ---------------------------cEEEEEccCCcccce----EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE
Confidence 233333322211122 3346778999999999999999999999999999
Q ss_pred ecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 436 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 436 ~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
+.+|.++|.+++|+|++.+|++|+.||.|++||
T Consensus 308 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.2e-47 Score=354.96 Aligned_cols=298 Identities=18% Similarity=0.273 Sum_probs=253.5
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
....+.+|.+.|++++|+||+++||+|+.||+|+|||..++...... ..|...|.+++|+|++.+|++++.|+.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~---~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV---TMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE---ecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 34578899999999999999999999999999999999888655543 334557999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
|++............. ...+|...|.+++|+|++..|++++.|++|++||+.+++.+..+.+|...|.++
T Consensus 133 ~~~~~~~~~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~ 202 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKK----------SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202 (354)
T ss_dssp EECCCCTTCCSGGGCE----------EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEeccccccccccce----------eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Confidence 9987543221111000 012477789999999999999999999999999999999999999999999999
Q ss_pred EEecC-CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 276 CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 276 ~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
+|+|. ++++|++|+.||.|++||++ .+..+..+.+|...|.+++|+|++.+|++++.|+.|++||++..
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~------ 272 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD------ 272 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC------
Confidence 99853 46899999999999999998 77888899999999999999999999999999999999999872
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
..+..+..+.....+ .+.+|+|++++|++|+.|+.|++||+.+++.+.
T Consensus 273 ----------------------------~~~~~~~~~~~~~~~----~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 273 ----------------------------REVAIYSKESIIFGA----SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp ----------------------------EEEEEECCTTCCSCE----EEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred ----------------------------cEEEEEcCCCcccce----eEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence 233333322211112 233677899999999999999999999999999
Q ss_pred EecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 435 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
.+.+|.+.|++++|+|++++|++++.||.|++|+
T Consensus 321 ~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999999996
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=351.36 Aligned_cols=314 Identities=21% Similarity=0.325 Sum_probs=246.6
Q ss_pred ccccCCCC-ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 118 WPVDQTTS-RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~-~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
..+.+|.. .|++++|+|+|++||+|+.|++|+|||+.++..........+|...|.+++|+|++++|++++.|++|++|
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEE
Confidence 45667887 99999999999999999999999999999886554545557888899999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe---eeEEEeccCCCeE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVN 273 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~ 273 (491)
++..+.......+ .+|...|.+++|+|++++|++|+.|+.|++||+.++. .+..+.+|...|.
T Consensus 89 ~~~~~~~~~~~~~--------------~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 89 KKNQDDFECVTTL--------------EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp EECCC-EEEEEEE--------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred EccCCCeEEEEEc--------------cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 9887653222211 2577799999999999999999999999999998763 4556778999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc--ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
+++|+ +++++|++|+.|+.|++||.+ ... ....+.+|...|++++|+|++++|++++.|+.|++||.......
T Consensus 155 ~~~~~-p~~~~l~s~s~d~~i~~w~~~----~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 155 HVVWH-PSQELLASASYDDTVKLYREE----EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp EEEEC-SSSSCEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred EEEEC-CCCCEEEEEeCCCcEEEEEec----CCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99998 788999999999999999986 433 45678899999999999999999999999999999997543221
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc-cceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
......... +....+..+.+ |. ...+..+|+|++..|++++.|+.|++|+...+
T Consensus 230 ~~~~~~~~~-------------------~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 230 QGVACSGSD-------------------PSWKCICTLSGFHS------RTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp TCCCCC----------------------CEEEEEEEECSSCS------SCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred ccceeeccC-------------------CccceeEEecCCCC------CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 111000000 00122333333 22 12244567789999999999999999998654
Q ss_pred c---------EEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCCCCC
Q 011216 431 E---------QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 431 ~---------~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
. ......+|...|++++|+|++. +||+++.||.|++|++......
T Consensus 285 ~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 285 SDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred CCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 2 1223468999999999999985 9999999999999999887644
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-47 Score=362.87 Aligned_cols=307 Identities=18% Similarity=0.293 Sum_probs=253.6
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..+.+|.+.|++++|+|+|++|++|+.||+|+|||+.++...... ..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~---~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI---KLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE---ECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE---ecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 567899999999999999999999999999999999998655443 45666899999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEE-----eccCCC
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRI-----LAHTSD 271 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~ 271 (491)
+.+....... ........+|...+.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...
T Consensus 137 ~~~~~~~~~~---------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 137 LSSQADRDGN---------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp CCCCSSCCCS---------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred CCCCccccCC---------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 9764321100 0001123468889999999996 457999999999999999999888776 578999
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
|.+++|++.++++|++|+.|++|++||++ .....+..+.+|...|.+++|+|++++|++++.|++|++||+++.
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~--- 281 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLR---ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG--- 281 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETT---TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECC---CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---
Confidence 99999987789999999999999999997 234667788999999999999999999999999999999999873
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee-eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
..+..+..+... ........+.+|+|+|++|++|+.||.|++||+.++
T Consensus 282 -------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 282 -------------------------------HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp -------------------------------EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred -------------------------------cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 233333322110 000011234467889999999999999999999999
Q ss_pred cEEEEe----cCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 431 EQVAAL----KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 431 ~~~~~~----~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+.+..+ .+|.+.|++++|+|++++|++|+.||.|++|++....
T Consensus 331 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 888777 6899999999999999999999999999999998654
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.7e-46 Score=341.24 Aligned_cols=293 Identities=18% Similarity=0.240 Sum_probs=248.1
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
....+.+|.+.|++++|+|+|++|++|+.||.|++||+.++..+... ..|...|.+++|+|++++|++++.|++|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe---eccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 34567899999999999999999999999999999999998655543 456678999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEeccCCCeEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~ 274 (491)
||+.+++...... +|...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...|.+
T Consensus 82 wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 82 FNYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp EETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred EECCCCcEEEEEe----------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 9999887644322 47779999999999999999999999999999887 455677899999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcC--CCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
++|+|.++.+|++|+.|++|++||++ .......+ .+|...+..+.|+| ++++|++++.|+.|++||+++
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---- 217 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---- 217 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECC----CCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence 99996688999999999999999997 44444333 45667899999986 778999999999999999987
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
...+..+.+|.... ...+|+|++.+|++|+.||.|++||+.+++
T Consensus 218 ------------------------------~~~~~~~~~h~~~v------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 218 ------------------------------KSCVATLEGHMSNV------SFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------------TEEEEEEECCSSCE------EEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------------CccceeeCCCCCCE------EEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 35677778776432 223577799999999999999999999999
Q ss_pred EEEEecCCCCCeeeeEecCCCC--eEEEEECCCcEEEecCCCC
Q 011216 432 QVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 432 ~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~Dg~i~iw~~~~~ 472 (491)
.+..+..|...+.+++|+|++. +|++|+.|| +.+|++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 262 VEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC--
T ss_pred eeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccC
Confidence 9999999999999999999886 577776555 778887653
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.3e-47 Score=353.51 Aligned_cols=300 Identities=21% Similarity=0.243 Sum_probs=233.1
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEE-eeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 120 VDQTTSRAYVSQFSADGSLFVAGFQ------ASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l~~~~~------dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
...|+..|++++|||||++||+|+. |+.|++|+..++...... .....|...|.+++|+|++++ ++++.||+
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~ 116 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDSGA 116 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETTSC
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECCCE
Confidence 3579999999999999999999997 788999998776332221 122356668999999999864 56788999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
|+|||+.+++......... .+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|
T Consensus 117 v~lWd~~~~~~~~~~~~~~------------~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAK------------YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp EEEC--------CCCCEEE------------CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEeeccccceeEEEeecc------------CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 9999998877544433221 2577799999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee--eccccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
++++|++....++++++.|+.|++||++ .+++... ...|...+.+++|+|+ +.+|++|+.|+.|++||+++.
T Consensus 185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~----~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~- 259 (357)
T 4g56_B 185 NCVAACPGKDTIFLSCGEDGRILLWDTR----KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP- 259 (357)
T ss_dssp EEEEECTTCSSCEEEEETTSCEEECCTT----SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-
T ss_pred EEEEEccCCCceeeeeccCCceEEEECC----CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-
Confidence 9999986556789999999999999998 4444443 3456778999999997 568899999999999999873
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC-cEEEEEecCCeEEEEECC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~ 428 (491)
+.+..+.+|... + .+++|+|++ ++|++|+.|+.|+|||+.
T Consensus 260 ---------------------------------~~~~~~~~~~~~--v----~~l~~sp~~~~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 260 ---------------------------------DSAQTSAVHSQN--I----TGLAYSYHSSPFLASISEDCTVAVLDAD 300 (357)
T ss_dssp ---------------------------------GGCEEECCCSSC--E----EEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred ---------------------------------cEeEEEecccee--E----EEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence 455666666532 2 223566666 689999999999999999
Q ss_pred CccEEEEecCCCCCeeeeEecC-CCCeEEEEECCCcEEEecCCCCCCCCC
Q 011216 429 SGEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 477 (491)
+++.+..+ +|.+.|++++|+| ++.+|+|++.||+|++|++....+...
T Consensus 301 ~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 301 FSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp SCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred CCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence 99887665 7999999999998 789999999999999999987655443
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=349.04 Aligned_cols=294 Identities=20% Similarity=0.230 Sum_probs=233.7
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE---------EEeeccCCceeEEEeEeCCCCceEEEEecCC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ---------KDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~---------~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg 191 (491)
..|...|.+++|+|||++|++++ |+++++||.... ... .......+...|.+++|+|++ .|++++.||
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW-LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE-EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceee-eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 45778899999999999999887 667888863210 000 000011233479999999985 678999999
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCC
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 271 (491)
+|+|||+.+++......... .+|...|.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~------------~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCK------------YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEE------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEEEeccCCCceeEeeccc------------cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 99999999887654433221 157779999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec--cccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCC
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~ 348 (491)
|.+++|++.+..+|++++.|++|++||++ .++....+. .|...+.+++|+|+ +++|++|+.||.|++||+++
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~- 246 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTR----CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS- 246 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETT----SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-
T ss_pred eEEEEecCCCCCceeeecccccccccccc----ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-
Confidence 99999996666789999999999999998 666665553 45567999999995 57889999999999999987
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC-cEEEEEecCCeEEEEEC
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~ 427 (491)
.+.+..+.+|.... .+++|+|++ ++|++|+.|+.|+|||+
T Consensus 247 ---------------------------------~~~~~~~~~h~~~v------~~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 247 ---------------------------------TSCVLSSAVHSQCV------TGLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp -----------------------------------CCEEEECCSSCE------EEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred ---------------------------------CcEEEEEcCCCCCE------EEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 35567777776332 233667777 68999999999999999
Q ss_pred CCccEEEEecCCCCCeeeeEecCCCC-eEEEEECCCcEEEecCCCCCC
Q 011216 428 VSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+++.+ .+.+|.+.|++++|+|+++ +|++++.||+|++|++.....
T Consensus 288 ~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 288 SLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 888755 5689999999999999987 577999999999999987543
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6e-45 Score=335.62 Aligned_cols=292 Identities=28% Similarity=0.467 Sum_probs=252.1
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..+.+|...|++++|+|+|++|++|+.||.|++|++.++..... ...|...|.+++|+|++++|++++.|+.|++||
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh---hccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 46689999999999999999999999999999999988755443 357777999999999999999999999999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...|.+++|
T Consensus 94 ~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 94 VSSGKCLKTLK----------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp TTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CCCCcEEEEEc----------------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 99887543322 36668999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
+ +++++|++++.||.|++||++ ..+.+..+ ..+...+..++|+|++++|++++.|+.|++||+++.
T Consensus 158 ~-~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------- 224 (312)
T 4ery_A 158 N-RDGSLIVSSSYDGLCRIWDTA----SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-------- 224 (312)
T ss_dssp C-TTSSEEEEEETTSCEEEEETT----TCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT--------
T ss_pred c-CCCCEEEEEeCCCcEEEEECC----CCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC--------
Confidence 8 788999999999999999997 55555554 356678999999999999999999999999999872
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
..+..+.+|..........+. .+++.+|++|+.||.|++||+.+++.+..+
T Consensus 225 --------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 275 (312)
T 4ery_A 225 --------------------------KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275 (312)
T ss_dssp --------------------------EEEEEECSSCCSSSCCCEEEE---CSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred --------------------------cEEEEEEecCCceEEEEEEEE---eCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence 445566665533222222222 247899999999999999999999999999
Q ss_pred cCCCCCeeeeEecCCCCeEEEEE--CCCcEEEecCC
Q 011216 437 KYHTSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 470 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~~~l~s~~--~Dg~i~iw~~~ 470 (491)
.+|...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999997 69999999864
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-44 Score=334.18 Aligned_cols=292 Identities=18% Similarity=0.253 Sum_probs=245.2
Q ss_pred ccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCC--eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 118 WPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
..+.+|.+.|++++|+|++ ++|++|+.|++|++|++... ..........+|...|.+++|+|++++|++++.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 4578999999999999965 89999999999999998642 11222334568888999999999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
+||+.+++...... +|...|.+++|+|++++|++|+.|+.|++||+. ++.+..+.+|...|.+
T Consensus 91 ~wd~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~ 153 (319)
T 3frx_A 91 LWDVATGETYQRFV----------------GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153 (319)
T ss_dssp EEETTTTEEEEEEE----------------CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred EEECCCCCeeEEEc----------------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence 99999887543322 477799999999999999999999999999996 4566778899999999
Q ss_pred EEEecC-----CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 275 VCFGDE-----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 275 i~~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
+.|+|. ++..|++++.|+.|++||++ .......+.+|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~- 228 (319)
T 3frx_A 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLN----QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK- 228 (319)
T ss_dssp EEECCC------CCEEEEEETTSCEEEEETT----TTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-
T ss_pred EEEccCCCCCCCccEEEEEeCCCEEEEEECC----cchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence 999843 35589999999999999998 67777888999999999999999999999999999999999872
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
+.+..+..+.. ..+.+|+|++.+|++++.+ .+++|++..
T Consensus 229 ---------------------------------~~~~~~~~~~~-------v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 229 ---------------------------------KAMYTLSAQDE-------VFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp ---------------------------------EEEEEEECCSC-------EEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred ---------------------------------cEEEEecCCCc-------EEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 44455544331 2345778899999988765 499999988
Q ss_pred ccEEEEec--------CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 430 GEQVAALK--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 430 ~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
+..+..+. .|...+.+++|+|||++|++|+.||.|++|++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 268 QYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 87776664 24567899999999999999999999999998653
No 12
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-44 Score=343.74 Aligned_cols=301 Identities=24% Similarity=0.407 Sum_probs=243.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecc---------------CCceeEEEeEeCCCCceEEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK---------------SLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---------------~~~~~v~~l~~sp~~~~l~~ 186 (491)
+|.+.|+|++|||||++||+|+ ++.+++|++.++..+....... .+...|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 6799999999886655432111 12224999999999999999
Q ss_pred EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 011216 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
++.|+.|++||+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~----------------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~- 203 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQ----------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL- 203 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-
T ss_pred EcCCCeEEEEECCCCcEEEEEc----------------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-
Confidence 9999999999998876543321 57779999999999999999999999999999999887766
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-------ccccccEEEEEEcCCCCEEEEeeCCCc
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-------MGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~i~~i~~sp~~~~l~~~~~dg~ 339 (491)
.+...+.+++|+|.++++|++|+.|+.|++||++ .+..+..+ .+|...|.+++|+|++++|++++.|+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~----~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~ 279 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE----TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT----TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC----CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 4667899999996689999999999999999997 55555544 578999999999999999999999999
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
|++||++......... ..........+.+|... ..+.+++|++.+|++|+.|
T Consensus 280 v~~wd~~~~~~~~~~~----------------------~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~l~sgs~D 331 (393)
T 1erj_A 280 VKLWNLQNANNKSDSK----------------------TPNSGTCEVTYIGHKDF------VLSVATTQNDEYILSGSKD 331 (393)
T ss_dssp EEEEEC-------------------------------------CEEEEEECCSSC------EEEEEECGGGCEEEEEETT
T ss_pred EEEEECCCCCCccccc----------------------CCCCCcceEEEecccCc------EEEEEECCCCCEEEEEeCC
Confidence 9999998643211100 00012344556666532 2334677789999999999
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecC------CCCeEEEEECCCcEEEecCCCC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
+.|++||+.+++++..+.+|.+.|.+++|++ ++++|++|+.||+|++|++...
T Consensus 332 ~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 332 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999999999999999999999999886 6789999999999999998643
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-43 Score=331.07 Aligned_cols=293 Identities=16% Similarity=0.265 Sum_probs=235.9
Q ss_pred CccccCCCCceEEEEE-----cC-CCCEEEEEECCCeEEEEECCCCeE----EEEEeeccCCceeEEEeEeCCCCceEEE
Q 011216 117 PWPVDQTTSRAYVSQF-----SA-DGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~-----s~-dg~~l~~~~~dg~i~vw~~~~~~~----~~~~~~~~~~~~~v~~l~~sp~~~~l~~ 186 (491)
...+.+|.+.|++++| ++ |+++|++|+.|++|++||+.++.. ........+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3467899999999999 77 999999999999999999875421 1222345678889999999999999999
Q ss_pred EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 011216 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 187 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
++.|++|++||+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.... .....
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~----------------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~ 156 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFV----------------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSA 156 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEE----------------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEc----------------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeee
Confidence 9999999999999886543322 477799999999999999999999999999998443 33333
Q ss_pred ---ccCCCeEEEEEecCC---------CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEe
Q 011216 267 ---AHTSDVNTVCFGDES---------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 267 ---~~~~~v~~i~~~~~~---------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~ 334 (491)
.|...|.+++|+|.. +.+|++++.|+.|++||. .......+.+|...|.+++|+|++++|+++
T Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-----~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-----TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-----CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 688999999998432 278999999999999995 456677888999999999999999999999
Q ss_pred eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEE
Q 011216 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+.|+.|++||++... .....+.... . ..+.+|+|++.+++
T Consensus 232 s~dg~v~iwd~~~~~---------------------------------~~~~~~~~~~---~----v~~v~~sp~~~~la 271 (343)
T 2xzm_R 232 GKDKKLLIWDILNLT---------------------------------YPQREFDAGS---T----INQIAFNPKLQWVA 271 (343)
T ss_dssp ETTCEEEEEESSCCS---------------------------------SCSEEEECSS---C----EEEEEECSSSCEEE
T ss_pred cCCCeEEEEECCCCc---------------------------------ccceeecCCC---c----EEEEEECCCCCEEE
Confidence 999999999995422 1112221111 1 23346777898887
Q ss_pred EEecCCeEEEEECCCccEEE--Eec-----------CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 415 TGSHDSCVYVYDLVSGEQVA--ALK-----------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 415 ~g~~dg~i~iwd~~~~~~~~--~~~-----------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
++ .|+.|++||+.+++... .+. +|...|.+++|+|++++|++|+.||.|++|++.++
T Consensus 272 ~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 272 VG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 65 57789999998766433 443 68889999999999999999999999999998653
No 14
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-43 Score=329.41 Aligned_cols=304 Identities=18% Similarity=0.273 Sum_probs=227.0
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
..+.+|.++|++++|+|+ +||+|+.|++|++||+..+. ..........|...|.+++|+|++++|++++.|++|+||
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 457899999999999998 99999999999999998752 222222233488899999999999999999999999999
Q ss_pred ECCCCcccc-ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC----eeeEEEeccCCC
Q 011216 197 DVGSGTMES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSD 271 (491)
Q Consensus 197 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~ 271 (491)
++....... ..... ....+|...|.+++|+|++++|++|+.|+.|++||+... +.+..+.+|...
T Consensus 86 ~~~~~~~~~~~~~~~----------~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 155 (330)
T 2hes_X 86 AKEESADRTFEMDLL----------AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155 (330)
T ss_dssp EC-------CCCEEE----------EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSC
T ss_pred EcccCcCccccceeE----------EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCc
Confidence 986432110 00000 011368889999999999999999999999999999432 456678899999
Q ss_pred eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC--cceeeeccccccEEEEEEcCC--CCEEEEeeCCCcEEEeeCCC
Q 011216 272 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~i~~sp~--~~~l~~~~~dg~i~iwd~~~ 347 (491)
|.+++|+ |++++|++|+.|++|++||.+ .. .++..+.+|...|.+++|+|+ +.+|++++.|+.|++||++.
T Consensus 156 v~~v~~~-p~~~~l~s~s~D~~i~iW~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 156 VKHVIWH-PSEALLASSSYDDTVRIWKDY----DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp EEEEEEC-SSSSEEEEEETTSCEEEEEEE----TTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred eEEEEEC-CCCCEEEEEcCCCeEEEEECC----CCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 9999998 788999999999999999986 33 567788999999999999998 77899999999999999875
Q ss_pred CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc-cceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
....... .+ .....+.+ |.. .+ ++.+|++++ +|++++.||.|++||
T Consensus 231 ~~~~~~~-------~~-------------------~~~~~~~~~h~~--~v----~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 231 DDEDDQQ-------EW-------------------VCEAILPDVHKR--QV----YNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp ECTTSCE-------EE-------------------EEEEECCSCCSS--CE----EEEEECTTS-CEEEEETTSCEEEEE
T ss_pred CCccccc-------ee-------------------EEeeeccccccc--ce----EEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 3211000 00 11222222 321 22 233455444 899999999999999
Q ss_pred CCCcc--EEE-EecCCCC-CeeeeEecC--CCCeEEEEECCCcEEEecCCC
Q 011216 427 LVSGE--QVA-ALKYHTS-PVRDCSWHP--SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 427 ~~~~~--~~~-~~~~h~~-~v~~~~~s~--~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
..+++ .+. .+.+|.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 98774 333 3357887 899999999 788999999999999999864
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-42 Score=348.44 Aligned_cols=297 Identities=17% Similarity=0.235 Sum_probs=245.8
Q ss_pred CCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC--
Q 011216 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-- 190 (491)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-- 190 (491)
.......+.+|...|++++|||||++||+|+.||+|+|||+.++..... .....|.+.|.+++|+|++++|++++.+
T Consensus 48 ~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp CSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 3455667889999999999999999999999999999999975432211 2335677899999999999999998865
Q ss_pred --CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCeeeEEEec
Q 011216 191 --PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 191 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
+.|++||. ++.... ..+|...|.+++|+|++. .|++|+.|++|++||..+++....+.+
T Consensus 127 ~~~~v~~wd~--~~~~~~----------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~ 188 (611)
T 1nr0_A 127 RFGHVFLFDT--GTSNGN----------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 188 (611)
T ss_dssp CSEEEEETTT--CCBCBC----------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC
T ss_pred ceeEEEEeeC--CCCcce----------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc
Confidence 47888874 332211 135778999999999987 699999999999999999999899999
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-------cccccEEEEEEcCCCCEEEEeeCCCcE
Q 011216 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~i~~i~~sp~~~~l~~~~~dg~i 340 (491)
|...|.+++|+ +++++|++|+.|++|++||+. .+..+..+. +|...|.+++|+|++++|++++.|++|
T Consensus 189 H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~----~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v 263 (611)
T 1nr0_A 189 HTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV----DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263 (611)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccCceEEEEEC-CCCCEEEEEECCCcEEEEECC----CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 99999999998 789999999999999999987 566666653 799999999999999999999999999
Q ss_pred EEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce-eeeeEEEEecCcccCCCcEEEEEecC
Q 011216 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
++||+++. +.+..+..+.. ......+.+ ++..+++++.|
T Consensus 264 ~lWd~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~------~~~~l~s~s~d 303 (611)
T 1nr0_A 264 KIWNVATL----------------------------------KVEKTIPVGTRIEDQQLGIIW------TKQALVSISAN 303 (611)
T ss_dssp EEEETTTT----------------------------------EEEEEEECCSSGGGCEEEEEE------CSSCEEEEETT
T ss_pred EEEeCCCC----------------------------------ceeeeecCCCCccceeEEEEE------cCCEEEEEeCC
Confidence 99999873 23333332211 011112222 57889999999
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+.+++||...++....+.+|...|++++|+|++++|++++.||.|++||+.++.
T Consensus 304 ~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 304 GFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 999999999999888899999999999999999999999999999999998764
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-42 Score=344.50 Aligned_cols=283 Identities=24% Similarity=0.368 Sum_probs=246.7
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
....+.+|...|.+++|+|++++|++++.|+.|++||.... .+. ....|...|.+++|+|++++|++++.|+.|++
T Consensus 295 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~---~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~ 370 (577)
T 2ymu_A 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeE---EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 34566889999999999999999999999999999998765 222 33567778999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
|+... +..... .+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus 371 ~~~~~-~~~~~~----------------~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 371 WNRNG-QLLQTL----------------TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp EETTC-CEEEEE----------------ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred EcCCC-CEEEEe----------------cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence 99643 322211 135668999999999999999999999999996 567778888999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+|+ +++++|++++.|+.|++||. .++.+..+.+|...|++++|+|++++|++++.|+.|++||...
T Consensus 433 ~~s-~d~~~l~~~~~d~~v~~w~~-----~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-------- 498 (577)
T 2ymu_A 433 AFS-PDDQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------- 498 (577)
T ss_dssp EEC-TTSSEEEEEETTSEEEEEET-----TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--------
T ss_pred EEC-CCCCEEEEEcCCCEEEEEEC-----CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------
Confidence 998 78899999999999999996 5677888899999999999999999999999999999999643
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 435 (491)
+.+..+.+|.... .+++|+|++++|++++.||.|++||. +++++..
T Consensus 499 ---------------------------~~~~~~~~h~~~v------~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 499 ---------------------------QLLQTLTGHSSSV------RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp ---------------------------CEEEEEECCSSCE------EEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred ---------------------------CEEEEEeCCCCCE------EEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 6677777776332 23367889999999999999999996 7889999
Q ss_pred ecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 436 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 436 ~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
+.+|.+.|++++|+||+++|+|++.||+|++||
T Consensus 545 ~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999999997
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-41 Score=317.86 Aligned_cols=293 Identities=20% Similarity=0.270 Sum_probs=240.0
Q ss_pred cccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE--EEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 119 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK--IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
.|.+|.+.|++++|+|+ +++||+|+.||+|+|||+.++.. ........+|...|.+++|+|++++|++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 57899999999999998 68999999999999999876532 1122344678889999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee-EEEeccCCCeEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNT 274 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~ 274 (491)
|+........... .+...+..+.+++++++|++++.|+.+++||+...... ....+|...+.+
T Consensus 113 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 113 WDLTTGTTTRRFV----------------GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp EETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred Eeecccceeeeec----------------CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 9998776543322 12336888899999999999999999999999776543 344578999999
Q ss_pred EEEecCC-CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccc
Q 011216 275 VCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 275 i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (491)
++|++.. ..++++++.|+.|++||++ ....+..+.+|...|++++|+|++++|++++.|+.|++||+++.
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~----- 247 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----- 247 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT-----
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECC----CCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC-----
Confidence 9998433 4578899999999999998 77888899999999999999999999999999999999999873
Q ss_pred cccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE
Q 011216 354 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 433 (491)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~ 433 (491)
..+..+..+.. +. ...++|++. +++++.|+.|++||+.++..+
T Consensus 248 -----------------------------~~~~~~~~~~~---v~----~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 248 -----------------------------KHLYTLDGGDI---IN----ALCFSPNRY-WLCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp -----------------------------EEEEEEECSSC---EE----EEEECSSSS-EEEEEETTEEEEEETTTTEEE
T ss_pred -----------------------------ceeeeecCCce---EE----eeecCCCCc-eeeccCCCEEEEEECCCCeEE
Confidence 44455554432 12 224566665 455667999999999988776
Q ss_pred EEec---------CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 434 AALK---------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 434 ~~~~---------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
..+. +|...|++++|+|++++|++|+.||.|+|||+.++.
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 6553 688899999999999999999999999999998874
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.9e-42 Score=342.68 Aligned_cols=341 Identities=16% Similarity=0.207 Sum_probs=255.6
Q ss_pred CCccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 116 GPWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
....+.+|...|++++|+|++. +|++|+.|++|++||..+++... ...+|...|.+++|+|++++|++++.|++|+
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~---~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS---TFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee---eeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 3456789999999999999997 69999999999999998874443 3467888999999999999999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE-----------
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----------- 263 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------- 263 (491)
+||+.+++........ .....+|...|.+++|+|++++|++++.|++|++||+.+++.+.
T Consensus 216 lwd~~~g~~~~~~~~~---------~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDD---------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTTCCEEEECBCT---------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCCcEeeeeccc---------cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 9999888764432110 00112588899999999999999999999999999998876543
Q ss_pred --------------------------------EEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee
Q 011216 264 --------------------------------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 311 (491)
Q Consensus 264 --------------------------------~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 311 (491)
.+.+|...|++++|+ +++++|++++.|++|++||+. .+.....
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s-pdg~~l~s~s~D~~v~~Wd~~----~~~~~~~ 361 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDIS----TGISNRV 361 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCEEEC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECC----CCceeee
Confidence 234789999999998 789999999999999999997 4444444
Q ss_pred e-ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccc---------------------------------cccC
Q 011216 312 L-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS---------------------------------CNLG 357 (491)
Q Consensus 312 ~-~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------~~~~ 357 (491)
+ .+|...|.+++|++++ .+++++.|+.+++|++........ ....
T Consensus 362 ~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp SSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred cccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 3 5678888888888765 577788888888888765321100 0000
Q ss_pred ---cccceeeceeecCCCCcccccCCC-CCeeEEEccccee------eeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 358 ---FRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVL------RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 358 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
.......+..+.+.|++..+.... +..+..+...... ......+.+++|+|+|++|++++.|+.|++||+
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence 001122344556666665554332 3344444321100 000112345678999999999999999999999
Q ss_pred CC-ccEEEE--ecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 428 VS-GEQVAA--LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 428 ~~-~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+ ++.+.. +.+|...|.+++|+||+++|++++.|++|++|++..+..
T Consensus 521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 87 555443 345999999999999999999999999999999987653
No 19
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.8e-43 Score=338.00 Aligned_cols=304 Identities=16% Similarity=0.192 Sum_probs=229.1
Q ss_pred ccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC-CCceEEEEecCCeEEE
Q 011216 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHI 195 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~i 195 (491)
.....|...|+|++|+| ++++||+|+.||.|+|||+.++... ......+|.+.|++++|+| ++++|++++.||+|++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34567899999999999 5679999999999999999876432 2334567888999999998 6899999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
||++++........ ..+...+.+++|+|++++|++|+.||.|++||+.. +.+..+.+|...|+++
T Consensus 192 wd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 192 QDFKGNILRVFASS--------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHV 256 (435)
T ss_dssp EETTSCEEEEEECC--------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEE
T ss_pred eeccCCceeEEecc--------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEee
Confidence 99986544222111 12333678899999999999999999999999965 4566788999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+|+|....+|++|+.|+.|++||++..... .......+|...|++++|+|+|++|++++.|+.|++||+++......
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~-- 333 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGK-ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG-- 333 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSS-SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE--
T ss_pred eecCCCceEEEEecCcceeeEEeccccccc-ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE--
Confidence 999666678999999999999999843311 22334467999999999999999999999999999999987543221
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe------------cCCeEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS------------HDSCVY 423 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~------------~dg~i~ 423 (491)
+..|..........+...++|++.+++++. .++.|+
T Consensus 334 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~ 381 (435)
T 4e54_B 334 --------------------------------LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTID 381 (435)
T ss_dssp --------------------------------ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEE
T ss_pred --------------------------------EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEE
Confidence 111110000000001112333444444432 346799
Q ss_pred EEECCCccEEEEec-CCCCCeeee-EecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 424 VYDLVSGEQVAALK-YHTSPVRDC-SWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 424 iwd~~~~~~~~~~~-~h~~~v~~~-~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++..++
T Consensus 382 iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 382 VFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp EECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99999999988875 688889988 6999999999876 8899999998764
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-41 Score=317.88 Aligned_cols=291 Identities=16% Similarity=0.208 Sum_probs=251.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
+..+.+|.+.|++++|+|+|++|++|+.||.|++||+.++..+.. ...|...|.+++|+|++++|++++.|+.|++|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT---LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh---hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 356789999999999999999999999999999999998865543 35677899999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----CeEEEEECCCCe-----------
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANK----------- 260 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-----g~i~vwd~~~~~----------- 260 (491)
|+.+++...... |...+.+++|+|++++|++++.+ +.|++||+....
T Consensus 102 d~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 102 DVSNGQCVATWK-----------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp ETTTCCEEEEEE-----------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred ECCCCcEEEEee-----------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 999887655443 22379999999999999999998 999999997653
Q ss_pred eeEEEeccCC--CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC-CcceeeeccccccEEEEEEcCCCCEEEEeeCC
Q 011216 261 LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 261 ~~~~~~~~~~--~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d 337 (491)
....+..|.. .+.+++|+ +++++|++++.||.|++||++ . ...+..+..|...|.+++|+|++++|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVS----NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp CSEEEECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETT----TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeeeccCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECC----CCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 3344556666 99999998 788999999999999999997 4 67788888999999999999999999999999
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
+.|++||+++. ..+..+..... .....|+|+++++++++
T Consensus 240 ~~i~v~d~~~~----------------------------------~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 240 TNSFLVDVSTL----------------------------------QVLKKYETDCP-------LNTAVITPLKEFIILGG 278 (369)
T ss_dssp SEEEEEETTTC----------------------------------CEEEEEECSSC-------EEEEEECSSSSEEEEEE
T ss_pred ceEEEEECCCC----------------------------------ceeeeecCCCC-------ceeEEecCCCceEEEee
Confidence 99999999873 34444442221 12335777999999999
Q ss_pred cCC--------------eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 418 HDS--------------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 418 ~dg--------------~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.++ .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++..+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp CCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred cCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 988 89999999999999999999999999999999999999999999999998654
No 21
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-41 Score=322.48 Aligned_cols=310 Identities=15% Similarity=0.195 Sum_probs=240.8
Q ss_pred CccccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC-CCceEEEEecCCeEE
Q 011216 117 PWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~ 194 (491)
...+.+|...|++++|+|++ ++|++|+.||.|+|||+.++..... ....+|...|.+++|+| ++++|++++.|+.|+
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 34667899999999999999 9999999999999999997754433 33346888999999999 789999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
+||+.+........ ..+|...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+
T Consensus 145 iwd~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 145 LRDFSGSVIQVFAK--------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EEETTSCEEEEEEC--------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred EEECCCCceEEEec--------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 99998643221111 1134458999999999999999999999999999 57778888899999999
Q ss_pred EEEecCCCC-EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 275 VCFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 275 i~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
++|+ +++. +|++++.|+.|++||++........+..+ +|...|.+++|+| ++++|++++.|+.|++||+++.....
T Consensus 210 ~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 210 AEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 9998 5565 99999999999999998543335555555 6999999999999 99999999999999999998855432
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCee-EEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV-ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
........ ...+ ...+ ..+.... . ....+++|++++ +|+.||.|++||+.+++
T Consensus 288 ~~~~~~~~---------------~~~~--~~~~~~~~~p~~---~----~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 288 QIIIHPHR---------------QFQH--LTPIKATWHPMY---D----LIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEEECCBC---------------CCTT--SCCCCCEECSSS---S----EEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred cccccccc---------------cccc--ccceEEeccCCC---C----ceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 21100000 0000 0000 0011000 0 111356677877 88899999999999999
Q ss_pred EEEEecC--CCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 432 QVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 432 ~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
.+..+.+ |...+..++|+|++++|++++ ||.|++||+.+
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 9999986 457777789999999999997 99999999875
No 22
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-41 Score=312.97 Aligned_cols=288 Identities=17% Similarity=0.215 Sum_probs=241.8
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE--eeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+|...|++++|+|++++|++++ ||.|++|++.++...... .....|...|.+++|+|++++|++++.|+.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3457999999999999999999998 999999999876422222 2223677799999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
|+.+++........ +|...|.+++|+|++++|++++.||.|++||+.+++....+..|...|.+++
T Consensus 125 d~~~~~~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 125 DLAAPTPRIKAELT--------------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp ECCCC--EEEEEEE--------------CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred ECCCCCcceeeecc--------------cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence 99887632222211 2555899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
|+ +++++|++++.|+.|++||++ ..+.+..+ .+...+.+++|+|++++|++++.++.|++||+++.
T Consensus 191 ~~-~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~-------- 256 (337)
T 1gxr_A 191 IS-NDGTKLWTGGLDNTVRSWDLR----EGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP-------- 256 (337)
T ss_dssp EC-TTSSEEEEEETTSEEEEEETT----TTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS--------
T ss_pred EC-CCCCEEEEEecCCcEEEEECC----CCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC--------
Confidence 98 788999999999999999997 55555554 47788999999999999999999999999999872
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
....+..|.. . ...+.|+|++++|++++.||.|++||+.+++.+...
T Consensus 257 ---------------------------~~~~~~~~~~--~----v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 257 ---------------------------DKYQLHLHES--C----VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp ---------------------------CEEEECCCSS--C----EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ---------------------------CeEEEcCCcc--c----eeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence 2233444432 1 233467779999999999999999999999888555
Q ss_pred cCCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 437 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
.|...|.+++|+|++++|++++.||.|++|++
T Consensus 304 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 -KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 48889999999999999999999999999996
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-40 Score=333.70 Aligned_cols=285 Identities=24% Similarity=0.388 Sum_probs=248.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+.+|...|.+++|+||+++|++++.|+.|++|+.... .+. ...+|...|.+++|+|++++|++++.|+.|++|
T Consensus 255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~---~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w 330 (577)
T 2ymu_A 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQ---TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEE---EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence 4567789999999999999999999999999999997653 332 335778899999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
|......... .+|...+.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++
T Consensus 331 ~~~~~~~~~~-----------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 331 NRNGQHLQTL-----------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 392 (577)
T ss_dssp ETTSCEEEEE-----------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEE
T ss_pred eCCCCeeEEE-----------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEE
Confidence 9876543221 135568999999999999999999999999996 5677788889999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
|+ +++++|++++.|+.|++||. .++.+..+.+|...|++++|+|++++|++++.|+.|++||...
T Consensus 393 ~s-~dg~~l~~~~~d~~v~~~~~-----~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--------- 457 (577)
T 2ymu_A 393 FS-PDGQTIASASDDKTVKLWNR-----NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--------- 457 (577)
T ss_dssp EC-TTSSCEEEEETTSEEEEECT-----TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---------
T ss_pred EC-CCCCEEEEEeCCCEEEEEeC-----CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---------
Confidence 98 78999999999999999996 5677888899999999999999999999999999999999754
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
+.+..+.+|.... .+++|+|++++|++++.|+.|++||. +++.+..+
T Consensus 458 --------------------------~~~~~~~~~~~~v------~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~ 504 (577)
T 2ymu_A 458 --------------------------QLLQTLTGHSSSV------RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 504 (577)
T ss_dssp --------------------------CEEEEEECCSSCE------EEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred --------------------------CEEEEEcCCCCCE------EEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence 5566666666322 23467889999999999999999995 78899999
Q ss_pred cCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 437 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 437 ~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
.+|...|++++|+|++++|++++.||.|++||...
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 99999999999999999999999999999999753
No 24
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.7e-41 Score=305.86 Aligned_cols=252 Identities=19% Similarity=0.255 Sum_probs=213.8
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~ 244 (491)
..+|...|.+++|+|++++|++++.||.|++||+.++....... .|..+|.+++|+|++++|++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~s 72 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ----------------VTETPVRAGKFIARKNWIIV 72 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEEEGGGTEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee----------------ccCCcEEEEEEeCCCCEEEE
Confidence 35677799999999999999999999999999999876543322 35558999999999999999
Q ss_pred EecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC-cceeeeccccccEEEEE
Q 011216 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFID 323 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~i~~i~ 323 (491)
|+.|+.|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||++ .. .....+.+|...|.+++
T Consensus 73 ~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~----~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWE----NNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGG----GTTEEEEEECCCCSCEEEEE
T ss_pred ECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECC----CCcchhhhhcccCCcEEEEE
Confidence 9999999999999999999999999999999998 788999999999999999997 33 45567889999999999
Q ss_pred EcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 324 SRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 324 ~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
|+| ++.+|++++.|+.|++||++..... .....++.... ....+
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~---------------------------------~~~~~~~~~~v--~~~~~ 192 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPN---------------------------------FTLTTGQERGV--NYVDY 192 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCS---------------------------------EEEECCCTTCE--EEEEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCcc---------------------------------ceeccCCcCcE--EEEEE
Confidence 999 6789999999999999999763321 11112222111 11222
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
. ..+++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+.+...
T Consensus 193 ~--~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~ 262 (304)
T 2ynn_A 193 Y--PLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (304)
T ss_dssp C--CSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred E--EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 2 234788999999999999999999999999999999999999999999999999999999999987653
No 25
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5e-41 Score=343.13 Aligned_cols=290 Identities=21% Similarity=0.285 Sum_probs=236.2
Q ss_pred cccCCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE--EEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
.+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+|...|.+++|+|++++|++|+.|++|+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 578999999999999875 79999999999999999763211 112234678889999999999999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEE---eccCCCe
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDV 272 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~v 272 (491)
||+.++....... +|...|.+++|+|++++|++++.|++|++||+......... .+|...|
T Consensus 457 wd~~~~~~~~~~~----------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 457 WDLAAGVSTRRFV----------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EETTTTEEEEEEE----------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred EECCCCcceeEEe----------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence 9999876543321 57779999999999999999999999999998665433222 3688899
Q ss_pred EEEEEecCC-CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 273 NTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 273 ~~i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
.+++|+|.. ...|++++.|++|++||++ .......+.+|...|++++|+|++++|++++.|+.|++||+++.
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~----~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~--- 593 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLS----NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG--- 593 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---
Confidence 999998433 3689999999999999998 77788889999999999999999999999999999999999873
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
..+..+..+.. ..+.+|+|++.+|++++ ++.|++||+.+++
T Consensus 594 -------------------------------~~~~~~~~~~~-------v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 594 -------------------------------KKLYSLEANSV-------IHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp -------------------------------EEEECCBCSSC-------EEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred -------------------------------ceEEEecCCCc-------EEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 22333332221 12336777888887765 5669999999998
Q ss_pred EEEEecCCC-------------------CCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 432 QVAALKYHT-------------------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 432 ~~~~~~~h~-------------------~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.+..+..+. ..+++++|+|+|++|++|+.||.|++|++.
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 887765322 137889999999999999999999999985
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.9e-41 Score=319.84 Aligned_cols=293 Identities=12% Similarity=0.115 Sum_probs=242.4
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------EEEEEeeccCCceeEEEeEeCCC----C---ceE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW------KIQKDILAKSLRWTVTDTSLSPD----Q---RHL 184 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~------~~~~~~~~~~~~~~v~~l~~sp~----~---~~l 184 (491)
..+.+|.+.|++++|+| ++|++|+.||.|++|++.++. .+.. ...|...|.+++|+|+ + ++|
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS---HFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE---EECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE---EecCCCcEEEEEEecccccCCccccEE
Confidence 45678999999999999 899999999999999999875 2332 2467778999999999 9 999
Q ss_pred EEEecCCeEEEEECCCCccccccceeccccccccccCCCCCc-----eecEEEEEEc----CCCCE-EEEEecCCeEEEE
Q 011216 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY-----SFGIFSLKFS----TDGRE-LVAGSSDDCIYVY 254 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~i~~s----~~~~~-l~~~~~dg~i~vw 254 (491)
++++.|+.|++|++.+++.......... .+| ...|.+++|+ |++++ |++++.||.|++|
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKL-----------DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEE-----------CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred EEEcCCCCEEEEEccCCcccccccceee-----------cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 9999999999999987764111000000 123 3589999999 99999 9999999999999
Q ss_pred ECCC------CeeeE-----EEe-------ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc--
Q 011216 255 DLEA------NKLSL-----RIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-- 314 (491)
Q Consensus 255 d~~~------~~~~~-----~~~-------~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-- 314 (491)
|+.+ ++.+. .+. .|...|.+++|+ +++ +|++++.||.|++||++ ....+..+..
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~ 227 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELS----TLRPLYNFESQH 227 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETT----TTEEEEEEECCC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECC----CCceeEEEeccc
Confidence 9998 66655 663 488999999998 677 99999999999999998 6778888888
Q ss_pred -c---cccEEEEEEcCCCCEEEEeeCC---CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEE
Q 011216 315 -H---LEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 315 -~---~~~i~~i~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
| ...|.+++|+|++++|++++.| +.|++||+++. ..+..
T Consensus 228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----------------------------------~~~~~ 273 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----------------------------------ERIGS 273 (397)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEE
T ss_pred cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC----------------------------------cccce
Confidence 8 9999999999999999999999 99999999873 34444
Q ss_pred Ecc-------------cceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec------CC---------
Q 011216 388 YKG-------------HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------YH--------- 439 (491)
Q Consensus 388 ~~~-------------~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~------~h--------- 439 (491)
+.+ |.. . ..+++|+|++++|++++.||.|++||+.+++.+..+. .|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~--~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 274 LSVPTHSSQASLGEFAHSS--W----VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp ECBC--------CCBSBSS--C----EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred eccCcccccccccccccCC--c----EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 444 332 1 2334677799999999999999999999999999998 88
Q ss_pred ------CCCeeeeEecCCC----------CeEEEEECCCcEEEecCCCC
Q 011216 440 ------TSPVRDCSWHPSQ----------PMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 440 ------~~~v~~~~~s~~~----------~~l~s~~~Dg~i~iw~~~~~ 472 (491)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 348 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 348 HGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999998765
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.5e-41 Score=314.95 Aligned_cols=302 Identities=18% Similarity=0.219 Sum_probs=240.5
Q ss_pred ccCCCCceEEEEEcCC----CCEEEEEECCCeEEEEECCCCeEEEEEee--ccCCceeEEEeEeCCC----CceEEEEec
Q 011216 120 VDQTTSRAYVSQFSAD----GSLFVAGFQASQIRIYDVERGWKIQKDIL--AKSLRWTVTDTSLSPD----QRHLVYASM 189 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~d----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~v~~l~~sp~----~~~l~~~~~ 189 (491)
..+|.++|++++|+|+ ...+++++.++.|++||+.++..+..... ...|...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 45666777777999999987655444332 2236678999999999 679999999
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEE---
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI--- 265 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~--- 265 (491)
||.|++||+.+++...... +|...|.+++|+| ++++|++++.||.|++||+.+++....+
T Consensus 94 dg~i~v~d~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYV----------------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCEEEEECTTTCCEEEEEE----------------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCEEEEEEchhceEeeeec----------------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 9999999999877644322 3666999999999 9999999999999999999999988887
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee----------------------------eeccccc
Q 011216 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG----------------------------VLMGHLE 317 (491)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~~~~ 317 (491)
..|...|.+++|+ +++++|++++.||.|++||++ ...... ....|..
T Consensus 158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRIN----SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESC----SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECC----CCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 6899999999998 788999999999999999997 333222 2233889
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeee
Q 011216 318 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.|.+++|+ +++|++++.|+.|++||+++........... ......+..+..|...
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~--- 287 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPS--------------------ESNVTILGRFDYSQCD--- 287 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTT--------------------CCCEEEEEEEECSSCC---
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccC--------------------CcchheeccccccCCc---
Confidence 99999998 6799999999999999998754322110000 0001234445555422
Q ss_pred EEEEecCcccCC--CcEEEEEecCCeEEEEECCCcc----EEEEecCC--CCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 398 IRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSGE----QVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 398 ~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
....+|+|+ +++|++|+.||.|++||+.+++ ....+..| ...|++++|+|++++|++++.||.|++||+
T Consensus 288 ---v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 288 ---IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ---SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ---EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 345578888 9999999999999999999875 44577777 799999999999999999999999999998
Q ss_pred C
Q 011216 470 P 470 (491)
Q Consensus 470 ~ 470 (491)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-40 Score=300.85 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=244.8
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+.+|.+.|++++| |++++|++|+.||.|++||+.++...... ..|...|.+++|+|++++|++++.|+.|++|
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV---YTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE---EECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe---ecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4567899999999999 99999999999999999999887544433 3456689999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
++............ .+|...|.+++| ++++|++++.||.|++|| .++....+..|...+.+++
T Consensus 87 ~~~~~~~~~~~~~~-------------~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 87 PLFATSGEDPLYTL-------------IGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp ETTCCTTSCC-CEE-------------CCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred EeeecCCCCcccch-------------hhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence 99765432222111 246668999999 577999999999999999 6777788889999999999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc-ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
|+|++++++++++.|+.|++||. ......+.. |...+.+++|+|++. +++++.|+.|++||+++
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d~------~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-------- 214 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQN------DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-------- 214 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEET------TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT--------
T ss_pred EccCCCCEEEEEECCCCEEEEec------CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc--------
Confidence 99779999999999999999994 355566666 889999999999998 99999999999999987
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 435 (491)
...+..+.+|... + .+.+|+|++ .|++++.||.|++||+.+++.+..
T Consensus 215 --------------------------~~~~~~~~~~~~~--i----~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 215 --------------------------GDVLRTYEGHESF--V----YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV 261 (313)
T ss_dssp --------------------------CCEEEEEECCSSC--E----EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE
T ss_pred --------------------------hhhhhhhhcCCce--E----EEEEEecCC-CEEEEecCCEEEEEECCCCceeEE
Confidence 3556666666532 2 233567788 588999999999999999999999
Q ss_pred ecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCC
Q 011216 436 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 436 ~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~ 477 (491)
+..|...|.+++|+|+++ +++++.||.|++|++..+.....
T Consensus 262 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 262 ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 999999999999999998 66799999999999988765444
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.1e-40 Score=315.01 Aligned_cols=298 Identities=15% Similarity=0.164 Sum_probs=241.9
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~ 198 (491)
.+..|.++|++++|+|+|++|++|+.|+.|++||+.++. .........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 345689999999999999999999999999999999874 1122233567789999999999999999999999999999
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee---eEEE-eccCCCeEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI-LAHTSDVNT 274 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~-~~~~~~v~~ 274 (491)
.+++....... .+|...|.+++|+|++++|++++.|+.|++||+..+.. ...+ ..|...|.+
T Consensus 82 ~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 82 KGRTWKPTLVI--------------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp ETTEEEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred CCCeeeeeEEe--------------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 87764332221 13556899999999999999999999999999988763 2233 478999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCcccc--------------CCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcE
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLN--------------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~--------------~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i 340 (491)
++|+ +++++|++++.||.|++||++... ..+..+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 148 ~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWH-PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred EEEc-CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 9998 788999999999999999964211 1456777788899999999999999999999999999
Q ss_pred EEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC
Q 011216 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 420 (491)
++||+++ ...+..+..|... + .+++|+|++++|++| .|+
T Consensus 227 ~i~d~~~----------------------------------~~~~~~~~~~~~~--v----~~~~~~~~~~~l~~~-~d~ 265 (372)
T 1k8k_C 227 CLADADK----------------------------------KMAVATLASETLP--L----LAVTFITESSLVAAG-HDC 265 (372)
T ss_dssp EEEEGGG----------------------------------TTEEEEEECSSCC--E----EEEEEEETTEEEEEE-TTS
T ss_pred EEEECCC----------------------------------CceeEEEccCCCC--e----EEEEEecCCCEEEEE-eCC
Confidence 9999987 3556666666422 2 233667789988888 899
Q ss_pred eEEEEECCC--ccE--------------------------------E------EEe-cCCCCCeeeeEec-CCC---CeE
Q 011216 421 CVYVYDLVS--GEQ--------------------------------V------AAL-KYHTSPVRDCSWH-PSQ---PML 455 (491)
Q Consensus 421 ~i~iwd~~~--~~~--------------------------------~------~~~-~~h~~~v~~~~~s-~~~---~~l 455 (491)
.|++|++.+ ++. . ..+ .+|..+|++++|+ ++| .+|
T Consensus 266 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l 345 (372)
T 1k8k_C 266 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF 345 (372)
T ss_dssp SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred eEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeE
Confidence 999999987 421 0 233 4899999999976 666 899
Q ss_pred EEEECCCcEEEecCCCCC
Q 011216 456 VSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 456 ~s~~~Dg~i~iw~~~~~~ 473 (491)
+|++.||.|++|++.+.+
T Consensus 346 ~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 346 CTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEETTSEEEEEEHHHHH
T ss_pred EEecCCCceEEEEecChh
Confidence 999999999999987654
No 30
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.6e-41 Score=319.41 Aligned_cols=311 Identities=17% Similarity=0.219 Sum_probs=240.4
Q ss_pred CCCCccccCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEee----------ccCCceeEEEeEeCC-CC
Q 011216 114 VNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDIL----------AKSLRWTVTDTSLSP-DQ 181 (491)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~~~v~~l~~sp-~~ 181 (491)
......+.+|.+.|++++|+| ++++||+|+.||.|++||+.++........ ...|...|.+++|+| ++
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence 344456778999999999999 999999999999999999987632222111 124788999999999 77
Q ss_pred ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---CCEEEEEecCCeEEEEECCC
Q 011216 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~~~~~dg~i~vwd~~~ 258 (491)
++|++++.|+.|++||+.+++...... +...+.++.|++. +.++++++.++.|++||+.+
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTLQTADVFN-----------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp TCEEEEETTSEEEEEETTTTEEEEEEE-----------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cEEEEEeCCCeEEEeeCCCCccceecc-----------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 899999999999999999887654443 2226889999984 45999999999999999999
Q ss_pred CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccC------------CCcceeeeccccccEEEEEEcC
Q 011216 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV------------KGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~~i~~i~~sp 326 (491)
++.+..+..|...|.+++|+|....+|++++.||.|++||++.... ..........|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 9999999999999999999854444799999999999999973220 1111222357889999999999
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
++++|++++.|+.|++||+++........ .+..........+....
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~ 301 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNY----------------------------------GKVCNNSKKGLKFTVSC 301 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCC----------------------------------CCCCCCCSSCCCCEECC
T ss_pred CCCEEEEecCCCeEEEEECCCCccceecc----------------------------------ccccccccccceeEEec
Confidence 99999999999999999998854322110 00000000000011111
Q ss_pred cCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 407 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 407 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
..+..+++++.++.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++|++...+...
T Consensus 302 -~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 302 -GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp -SSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred -CCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 234567777889999999999999999999999999999999999999999999999999999876543
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-40 Score=315.24 Aligned_cols=288 Identities=18% Similarity=0.247 Sum_probs=236.5
Q ss_pred cCCCCceEEEEEcCCCC-EEEEEECCCeEEEEEC----CCCe------EEEEEee-cc------CCceeEEEeEeCCCCc
Q 011216 121 DQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDV----ERGW------KIQKDIL-AK------SLRWTVTDTSLSPDQR 182 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~----~~~~------~~~~~~~-~~------~~~~~v~~l~~sp~~~ 182 (491)
..|.+.|++++|+|+|+ +||+|+.||.|++|++ .++. ....... .. .|...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45679999999999999 9999999999999999 7775 2222211 11 1566899999999999
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
+|++++.||.|++||. +++...... +|...|.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 122 ~l~~~~~dg~i~i~~~-~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 122 SIVTGVENGELRLWNK-TGALLNVLN----------------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp EEEEEETTSCEEEEET-TSCEEEEEC----------------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred EEEEEeCCCeEEEEeC-CCCeeeecc----------------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 9999999999999993 333322211 36668999999999999999999999999999776543
Q ss_pred E--------------------------------------------------------EEeccCCCeEEEEEecCCCCEEE
Q 011216 263 L--------------------------------------------------------RILAHTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 263 ~--------------------------------------------------------~~~~~~~~v~~i~~~~~~~~~l~ 286 (491)
. .+..|...|.+++|+ +++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEE
Confidence 3 333577889999998 7888999
Q ss_pred EEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeece
Q 011216 287 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 366 (491)
Q Consensus 287 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 366 (491)
+++.|+.|++||++ ....+..+..|...|.+++|+|++ ++++++.|+.|++||+++.
T Consensus 264 ~~~~d~~i~i~d~~----~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------------------ 320 (425)
T 1r5m_A 264 SASDDGTLRIWHGG----NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------------------ 320 (425)
T ss_dssp EEETTSCEEEECSS----SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT------------------
T ss_pred EEcCCCEEEEEECC----CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC------------------
Confidence 99999999999998 667788888899999999999999 9999999999999999872
Q ss_pred eecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc---------------
Q 011216 367 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--------------- 431 (491)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~--------------- 431 (491)
..+..+..|... ..+++|+|++++|++++.||.|++||+.+++
T Consensus 321 ----------------~~~~~~~~~~~~------i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 378 (425)
T 1r5m_A 321 ----------------TLLALSIVDGVP------IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN 378 (425)
T ss_dssp ----------------EEEEEEECTTCC------EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------
T ss_pred ----------------cEeEecccCCcc------EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccC
Confidence 445555555422 2234677799999999999999999999888
Q ss_pred -----EEEEecCCCC--CeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 432 -----QVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 432 -----~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
.+..+..|.. .|++++|+|++++|++++.||.|++|+++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 379 PLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred cccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8899999976 999999999999999999999999999863
No 32
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.3e-39 Score=310.90 Aligned_cols=302 Identities=18% Similarity=0.223 Sum_probs=242.3
Q ss_pred cccCCCCCccccCCC----CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEE
Q 011216 110 RYLPVNGPWPVDQTT----SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~----~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 185 (491)
|.+|..+...++.-. -..+.++||++ ++||+|. |++|+|||+.+++... ......|...|++++|+|+|++|+
T Consensus 87 r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 87 RYIPSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCCEEE
Confidence 445555444444322 23578999976 5788775 8999999999986554 345567788899999999999999
Q ss_pred EEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEE
Q 011216 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLR 264 (491)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~ 264 (491)
+|+.||.|+|||+.+++...... +|...+.++.++ +..|++|+.|+.+++||..... .+..
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~~~~----------------~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~ 225 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLRNMT----------------SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT 225 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred EEECCCeEEEEEcCCCcEEEEEe----------------CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE
Confidence 99999999999999887644332 466688888775 6799999999999999987644 4567
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC-EEEE--eeCCCcEE
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLIS--NGKDQAIK 341 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~~--~~~dg~i~ 341 (491)
+.+|...+..+.++ ++++++++++.|+.+++|+..........+.....|...|.+++|+|++. .+++ |+.|+.|+
T Consensus 226 ~~~h~~~~~~~~~~-~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 226 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred ecccccceeeeeec-CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 78999999999998 88999999999999999999855444456677888999999999999764 4444 45799999
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe--cC
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HD 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~d 419 (491)
+||+.+. ..+..+..+... . +..|+|+++.+++++ .|
T Consensus 305 iwd~~t~----------------------------------~~~~~~~~~~~v---~----~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 305 IWNVCSG----------------------------------ACLSAVDAHSQV---C----SILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp EEETTTT----------------------------------EEEEEEECSSCE---E----EEEEETTTTEEEEEECTTT
T ss_pred EEeCCcc----------------------------------ccceeeccccce---e----eeeecCCCCeEEEEEecCC
Confidence 9999873 444455444322 2 224566888887765 68
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+.|+|||+.+++++..+.+|.+.|++++|+|||++|+||+.||+|+|||+....+
T Consensus 344 ~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 9999999999999999999999999999999999999999999999999976543
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-40 Score=313.91 Aligned_cols=253 Identities=21% Similarity=0.356 Sum_probs=219.0
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~ 244 (491)
..+|..+|++++|+|++++|++|+.|++|++||+.+++...... +|...|.+++|+|++++|++
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~----------------~h~~~V~~v~~~~~~~~l~s 167 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----------------GHTDSVQDISFDHSGKLLAS 167 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC----------------CCSSCEEEEEECTTSSEEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----------------ccCCcEEEEEEcCCCCEEEE
Confidence 35788899999999999999999999999999999887644322 57779999999999999999
Q ss_pred EecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEE
Q 011216 245 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~ 324 (491)
|+.|+.|++||+.+++++..+.+|...|.+++|+ +++++|++|+.|++|++||++ .+..+..+.+|...|.++.+
T Consensus 168 gs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 168 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp EETTSCCCEEETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE
T ss_pred EeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEeCCCccEEEEEE
Confidence 9999999999999999999999999999999998 788999999999999999998 77888899999999999999
Q ss_pred cCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecC
Q 011216 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 325 sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
+|++.+|++++.|+.|++||+++. .....+.+|.... ..+.|+|
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~----------------------------------~~~~~~~~h~~~v--~~~~~~~ 286 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATK----------------------------------ECKAELREHRHVV--ECISWAP 286 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCCSSCE--EEEEECC
T ss_pred CCCCCEEEEEcCCCeEEEEECCCC----------------------------------ceeeEecCCCceE--EEEEEcC
Confidence 999999999999999999999873 3344444444222 1222222
Q ss_pred c----------------ccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 405 V----------------YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 405 ~----------------~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
. ...++.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp SCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred cccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 1 111378999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011216 469 FPGNGE 474 (491)
Q Consensus 469 ~~~~~~ 474 (491)
+..+..
T Consensus 367 ~~~~~~ 372 (410)
T 1vyh_C 367 YKNKRC 372 (410)
T ss_dssp CTTSCC
T ss_pred CCCCce
Confidence 977654
No 34
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-41 Score=325.21 Aligned_cols=324 Identities=14% Similarity=0.207 Sum_probs=239.8
Q ss_pred ccc-cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC---CeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 118 WPV-DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 118 ~~~-~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +........ ..|...|.+++|+|++++|++++.||.
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~ 134 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKDGQ 134 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE-EECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee-ccCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 345 78999999999999 999999999999999999876 421111111 146778999999999999999999999
Q ss_pred EEEEECC---CCccccccceeccccccccccCCCCCceecEEEEE--EcCCCCEEEEEecCCeEEEEECCCCeeeEEEec
Q 011216 193 VHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK--FSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 193 i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~--~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
|++||+. +++........ ....+.+... ++...+.++. +++++.+|++++.|+.|++||+.+++.+..+..
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 210 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCE-CIRKINLKNF---GKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN 210 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEE-EEEEEEGGGG---SSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEeccccCCceeeccccc-eeEEEEccCc---ccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence 9999995 44443322211 1111111110 1334677777 668999999999999999999999999999987
Q ss_pred --cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-cccccEEEEEEc----CCCCEEEEeeCCCcE
Q 011216 268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSR----GDGRYLISNGKDQAI 340 (491)
Q Consensus 268 --~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~i~~s----p~~~~l~~~~~dg~i 340 (491)
|...|++++|+ +++++|++|+.||.|++||++ .+..+..+. .|...|.+++|+ |++.+|++++.|+.|
T Consensus 211 ~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 211 SPRHGAVSSICID-EECCVLILGTTRGIIDIWDIR----FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp CGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETT----TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred CCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcC----CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 89999999998 789999999999999999998 677777765 788899999655 568899999999999
Q ss_pred EEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc--cceeeeeEEEEecCcccCCCcEEEEEec
Q 011216 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 418 (491)
++||+++.......... ...+....+.+....+.. ..+.+ |.. . ..+.+|+ ++++|++|+.
T Consensus 286 ~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~------~~~~~~~~~~--~----v~~l~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINS----DEQPSMEHFLPIEKGLEE------LNFCGIRSLN--A----LSTISVS-NDKILLTDEA 348 (437)
T ss_dssp EEEETTTTEEEEEEESS----SSCCCGGGGSCBCSSGGG------CCCCCCCSGG--G----GCCEEEE-TTEEEEEEGG
T ss_pred EEEEcCCCcEEEEEEcC----CCCCccceeccccccccc------ceecccccCC--c----eEEEEEC-CceEEEecCC
Confidence 99999875432222110 001111122222211100 00112 221 1 1233556 6799999999
Q ss_pred CCeEEEEECCCccEEEEecC-------------------------------------CCCCeeeeEecCC--CCeEEEEE
Q 011216 419 DSCVYVYDLVSGEQVAALKY-------------------------------------HTSPVRDCSWHPS--QPMLVSSS 459 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~~~~s~~--~~~l~s~~ 459 (491)
||.|++||+.+++.+..+.+ |...|++++|+++ +.+|++|+
T Consensus 349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 99999999999887766654 8899999999998 77999999
Q ss_pred CCCcEEEec
Q 011216 460 WDGDVVRWE 468 (491)
Q Consensus 460 ~Dg~i~iw~ 468 (491)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999995
No 35
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-40 Score=311.84 Aligned_cols=301 Identities=12% Similarity=0.056 Sum_probs=221.1
Q ss_pred CCceEEEEEcCCCCEEEEEECCC-------eEEEEECCCCe-------EEEEEeeccCCceeEEEeEeCCCCceEEEEe-
Q 011216 124 TSRAYVSQFSADGSLFVAGFQAS-------QIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 188 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg-------~i~vw~~~~~~-------~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~- 188 (491)
.-||+|++|+|||++|++|+.+. .|++|++..+. ..........|...|.++++ +++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence 45899999999999999997643 59999987542 11222345567777877766 455666653
Q ss_pred ----------cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe--cCCeEEEEEC
Q 011216 189 ----------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL 256 (491)
Q Consensus 189 ----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~--~dg~i~vwd~ 256 (491)
.|+.+++|++.......... ... .......+...+.+++|+|||+++++++ .|++|+|||+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFL--TSV-----DFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEE--EEE-----CSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEe--eee-----ceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 46789999886543211110 000 0011122334688999999999887554 6899999999
Q ss_pred CCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcce--eeeccccccEEEEEEcCCCCEEEEe
Q 011216 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--GVLMGHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~i~~i~~sp~~~~l~~~ 334 (491)
.+++.+..+ .|...|.+++|+ |+++++++++.++.+ +|+.. .+..+ .....|...|.+++|+|++++++++
T Consensus 165 ~~~~~~~~~-~~~~~V~~v~fs-pdg~~l~s~s~~~~~-~~~~~----~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 165 SDLTEKFEI-ETRGEVKDLHFS-TDGKVVAYITGSSLE-VISTV----TGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp TTTEEEEEE-ECSSCCCEEEEC-TTSSEEEEECSSCEE-EEETT----TCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEe-CCCCceEEEEEc-cCCceEEeccceeEE-EEEec----cCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Confidence 999988877 578889999998 889999999866555 55443 34433 3345688899999999999999999
Q ss_pred eCCC----cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC
Q 011216 335 GKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 335 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
+.|+ .+++|++....... .....+.+|... +.+++|+|+|
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~~~~~------V~~~~~Spdg 281 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSV------------------------------LRSKQVTNRFKG------ITSMDVDMKG 281 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEE------------------------------EEEEEEESSCSC------EEEEEECTTS
T ss_pred ecCCcceeEEeecccccceecc------------------------------eeeeeecCCCCC------eEeEEECCCC
Confidence 9887 57888876522100 112233444321 2344788899
Q ss_pred cEEEEEecCCeEEEEECCCccEEEEe-cCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
++||+|+.|+.|+|||+.+++++..+ .+|..+|++++|+|||++|||++.|++|+||+++.+....
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~ 348 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANY 348 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCc
Confidence 99999999999999999999999875 7999999999999999999999999999999998665443
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-40 Score=319.93 Aligned_cols=299 Identities=14% Similarity=0.215 Sum_probs=243.5
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEE
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIV 196 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iw 196 (491)
..|...|.+++|+|++++|++|+.||.|++|++.+ +.. .......|...|.+++|+|+ +++|++++.|+.|++|
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN--SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC--EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc--chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 46899999999999999999999999999999987 211 22344678889999999998 8999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEEecc------C
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH------T 269 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~ 269 (491)
|+.+++....... .+......+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+..+ .
T Consensus 142 d~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 142 DMNKCTESPSNYT-------PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp BTTTTSSCTTTCC-------CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred ECCCCcccccccc-------ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence 9988762110000 0000112357779999999998 789999999999999999999988888766 7
Q ss_pred CCeEEEEEecCCCCEEEEEeCCC---eEEEEeCccccCCC-cceeeec-cccccEEEEEEcC-CCCEEEEeeCCCcEEEe
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKG-KPAGVLM-GHLEGITFIDSRG-DGRYLISNGKDQAIKLW 343 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~-~~~~~~~-~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iw 343 (491)
..|.+++|+|.+..+|++++.|+ .|++||++ .. .++..+. +|...|.+++|+| ++++|++++.|+.|++|
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~----~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR----NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT----STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCC----CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 89999999955558999999999 99999998 43 5666777 8999999999999 99999999999999999
Q ss_pred eCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC-cEEEEEecCCeE
Q 011216 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCV 422 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i 422 (491)
|+++ .+.+..+.+|... ..+++|+|++ .+|++++.||.|
T Consensus 291 d~~~----------------------------------~~~~~~~~~~~~~------v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 291 NPES----------------------------------AEQLSQFPARGNW------CFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp CSSS----------------------------------CCEEEEEECSSSC------CCCEEECTTCTTEEEECCSSSEE
T ss_pred eCCC----------------------------------CccceeecCCCCc------eEEEEECCCCCCEEEEEecCCcE
Confidence 9987 3556666666532 2334677788 899999999999
Q ss_pred EEEECCCccEEEEec-----------------------------------CCCCCeeeeEecCCCCeEEEEECCCcEEEe
Q 011216 423 YVYDLVSGEQVAALK-----------------------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 423 ~iwd~~~~~~~~~~~-----------------------------------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw 467 (491)
++||+.++....... .|..++.+++|+|+|++|++++.||.|+||
T Consensus 331 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w 410 (416)
T 2pm9_A 331 EVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSIT 410 (416)
T ss_dssp EEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCB
T ss_pred EEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEE
Confidence 999998765322211 167788899999999999999999999999
Q ss_pred cCCCC
Q 011216 468 EFPGN 472 (491)
Q Consensus 468 ~~~~~ 472 (491)
++.++
T Consensus 411 ~~~~~ 415 (416)
T 2pm9_A 411 NPKIS 415 (416)
T ss_dssp CCCCC
T ss_pred EeccC
Confidence 99864
No 37
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=292.71 Aligned_cols=301 Identities=17% Similarity=0.218 Sum_probs=236.5
Q ss_pred cccCCCCCccccC--CCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEE
Q 011216 110 RYLPVNGPWPVDQ--TTS--RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 110 ~~~~~~~~~~~~~--h~~--~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 185 (491)
|++|..+...|++ ..+ ..++|+||+++ +||+| .|++|+|||+.+++.+.. .....|...|++++|+|++++|+
T Consensus 7 r~~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 7 RYIPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSSEEE
T ss_pred cccCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCCEEE
Confidence 5666666565543 222 24789999986 77776 489999999999866554 45567888899999999999999
Q ss_pred EEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEE
Q 011216 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLR 264 (491)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~ 264 (491)
+|+.|++|++|++.+++...... +|...+.++.+ ++..+++++.++.+++|+..... .+..
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~----------------~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~ 145 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMT----------------SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT 145 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE----------------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred EEECCCcEEEeecCCceeEEEec----------------CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE
Confidence 99999999999999987654332 35556665554 56799999999999999998764 4566
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEE---EEeeCCCcEE
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL---ISNGKDQAIK 341 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l---~~~~~dg~i~ 341 (491)
+.+|...+.++.+. +++++|++++.|+.|++||++..............+...|.+++++|++..+ ++++.++.|+
T Consensus 146 ~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 146 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EcCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 77999999999997 8889999999999999999985544444556667788899999999976543 4667889999
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe--cC
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HD 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~--~d 419 (491)
+||.+... ......... .+.. ..++|+++.+++++ .|
T Consensus 225 lwd~~~~~----------------------------------~~~~~~~~~---~v~~----~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 225 IWNVCSGA----------------------------------CLSAVDAHS---QVCS----ILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp EEETTTCC----------------------------------EEEEEECSS---CEEE----EEEETTTTEEEEEECTTT
T ss_pred EEeccccc----------------------------------cccccccee---eeee----eeecccccceEEEEEcCC
Confidence 99988732 222222221 1112 24555777776654 79
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+.|++||+.+++++..+.+|.+.|++++|+|++++|+||+.||+|+|||+...+
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999997643
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-39 Score=309.88 Aligned_cols=304 Identities=20% Similarity=0.236 Sum_probs=238.0
Q ss_pred cccCCCCCcccc--CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE
Q 011216 110 RYLPVNGPWPVD--QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 110 ~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 187 (491)
+.+|..+...+. +|...+++.++++++..+++++.|+.|++||+.++....... ..|...|.+++|+|++++|+++
T Consensus 75 r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~ 152 (401)
T 4aez_A 75 RRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVG 152 (401)
T ss_dssp CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEE
T ss_pred CcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEE
Confidence 334444444443 666665444444344568888899999999999986554432 3367789999999999999999
Q ss_pred ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC-CCeeeEEEe
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRIL 266 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~ 266 (491)
+.||.|++||+.+++...... +|...|.+++|+ +++|++++.||.|++||+. .......+.
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~----------------~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMA----------------GHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred CCCCeEEEEECcCCeEEEEec----------------CCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence 999999999998876544332 466689999994 6799999999999999998 566677888
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC-EEEEee--CCCcEEEe
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNG--KDQAIKLW 343 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~~~~--~dg~i~iw 343 (491)
+|...|.+++|+ +++++|++|+.|+.|++||++ ....+..+..|...|.+++|+|++. ++++++ .|+.|++|
T Consensus 215 ~~~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 215 GHSSEVCGLAWR-SDGLQLASGGNDNVVQIWDAR----SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred CCCCCeeEEEEc-CCCCEEEEEeCCCeEEEccCC----CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 999999999998 689999999999999999998 6778888889999999999999765 555554 69999999
Q ss_pred eCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE--EecCCe
Q 011216 344 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDSC 421 (491)
Q Consensus 344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~ 421 (491)
|+++. ..+..+..+.. ..+++|+|+++++++ |+.||.
T Consensus 290 d~~~~----------------------------------~~~~~~~~~~~-------v~~~~~s~~~~~l~~~~g~~dg~ 328 (401)
T 4aez_A 290 NAATG----------------------------------ARVNTVDAGSQ-------VTSLIWSPHSKEIMSTHGFPDNN 328 (401)
T ss_dssp ETTTC----------------------------------CEEEEEECSSC-------EEEEEECSSSSEEEEEECTTTCE
T ss_pred ECCCC----------------------------------CEEEEEeCCCc-------EEEEEECCCCCeEEEEeecCCCc
Confidence 99873 44444443321 233467789999999 448999
Q ss_pred EEEEECCCccEEE--EecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCCC
Q 011216 422 VYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPL 479 (491)
Q Consensus 422 i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~ 479 (491)
|++||+.+++... .+.+|...|.+++|+|++++|++++.||.|++|++.+++......
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9999999865544 467899999999999999999999999999999999887655433
No 39
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.8e-40 Score=309.41 Aligned_cols=297 Identities=16% Similarity=0.188 Sum_probs=233.3
Q ss_pred cccCCCCceEEEEEcCCCCEEE-EEEC---CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC---CceEEEEecCC
Q 011216 119 PVDQTTSRAYVSQFSADGSLFV-AGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD---QRHLVYASMSP 191 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~-~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---~~~l~~~~~dg 191 (491)
.+.+|...|++++|+|+++.++ +|+. ||.|++||+.++....... ..|...|.+++|+|+ +++|++++.||
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee--ecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 4467999999999999997555 5555 8999999999875443322 256678999999998 69999999999
Q ss_pred eEEEEECCCCc-cccccceeccccccccccCCCCCceecEEEEEE------cCCCCEEEEEecCCeEEEEECCCCe-eeE
Q 011216 192 IVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKF------STDGRELVAGSSDDCIYVYDLEANK-LSL 263 (491)
Q Consensus 192 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~------s~~~~~l~~~~~dg~i~vwd~~~~~-~~~ 263 (491)
.|++||+.+++ ..... .+|...|.++.| +|++++|++++.||.|++||+.+++ ...
T Consensus 91 ~i~iwd~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSV----------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp CEEEECTTSCSSCSEEE----------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred eEEEEeCCCCCccEEEE----------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 99999998876 32221 146668999954 6899999999999999999999887 667
Q ss_pred EEeccCC----CeEEEEEec---CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC---CCCEEEE
Q 011216 264 RILAHTS----DVNTVCFGD---ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLIS 333 (491)
Q Consensus 264 ~~~~~~~----~v~~i~~~~---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp---~~~~l~~ 333 (491)
.+..|.+ .+.+++|++ +++++|++++.||.|++||++ .... .....|...|.+++|+| ++.+|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR----NMAL-RWETNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT----TTEE-EEEEECSSCEEEEEESCSSSSCCEEEE
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc----cCce-eeecCCCCceEEEEcCCCCCCCCEEEE
Confidence 7765554 899999432 789999999999999999997 4444 34466889999999999 9999999
Q ss_pred eeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc-E
Q 011216 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-Y 412 (491)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~ 412 (491)
++.||.|++||+++....... ....+.+|.. . ..+++|+|+++ +
T Consensus 230 ~~~dg~i~i~d~~~~~~~~~~-----------------------------~~~~~~~~~~--~----v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 230 TSLEGKFHVFDMRTQHPTKGF-----------------------------ASVSEKAHKS--T----VWQVRHLPQNREL 274 (357)
T ss_dssp EESTTEEEEEEEEEEETTTEE-----------------------------EEEEEECCSS--C----EEEEEEETTEEEE
T ss_pred ECCCCeEEEEeCcCCCcccce-----------------------------eeeccCCCcC--C----EEEEEECCCCCcE
Confidence 999999999999874321110 1112234432 1 23346777888 8
Q ss_pred EEEEecCCeEEEEECCCc-------------------cEEEEecCCCCCeeeeEecCCCCeEE-EEECCCcEEEecCCCC
Q 011216 413 IYTGSHDSCVYVYDLVSG-------------------EQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN 472 (491)
Q Consensus 413 l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~Dg~i~iw~~~~~ 472 (491)
|++++.||.|++||+.++ +.+..+.+|..+|++++|+|++++|+ +++.||.|++|++...
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999999998754 46777889999999999999999998 8999999999999765
Q ss_pred C
Q 011216 473 G 473 (491)
Q Consensus 473 ~ 473 (491)
.
T Consensus 355 ~ 355 (357)
T 3i2n_A 355 N 355 (357)
T ss_dssp -
T ss_pred c
Confidence 3
No 40
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=298.45 Aligned_cols=251 Identities=22% Similarity=0.278 Sum_probs=219.6
Q ss_pred eccCCceeEEEeEeCCC----CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC
Q 011216 164 LAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~ 239 (491)
...+|...|.+++|+|+ +.+|++|+.|++|+||++.+++...... ..+|...|.+++|++++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~--------------l~gh~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS--------------LEGHQLGVVSVDISHTL 92 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE--------------ECCCSSCEEEEEECSSS
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee--------------eccCCCCEEEEEECCCC
Confidence 34678899999999985 5689999999999999987665322211 12577899999999999
Q ss_pred CEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccE
Q 011216 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 240 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
.++++++.|+.|++||+.+++.+..+..|...+.+++|+ +++++|++|+.|+.|++||++ .+.....+..|...|
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~----~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVE----SGKKEYSLDTRGKFI 167 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETT----TCSEEEEEECSSSCE
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcC----CCceeEEecCCCceE
Confidence 999999999999999999999999999999999999998 889999999999999999998 777778888899999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEE
Q 011216 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
.+++|+|++++|++++.|+.|++||+++ ++.+..+.+|....
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~----------------------------------~~~~~~~~~h~~~v---- 209 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIAT----------------------------------GKLLHTLEGHAMPI---- 209 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCC----
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCC----------------------------------CcEEEEEcccCCce----
Confidence 9999999999999999999999999987 35566677665322
Q ss_pred EEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++.
T Consensus 210 --~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 210 --RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp --CEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred --eEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 234678899999999999999999999999999999999999999999999999999999999999998764
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-40 Score=319.03 Aligned_cols=297 Identities=15% Similarity=0.250 Sum_probs=240.5
Q ss_pred CCceEEEEEcCCCC-EEEEE----------ECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 124 TSRAYVSQFSADGS-LFVAG----------FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 124 ~~~v~~~~~s~dg~-~l~~~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
...|.+++|+|+|+ +|++| +.|+.|+|||+.++.... ......|...|.+++|+|++++|++++.|+.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK-PIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS-CSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc-EEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 35788999999997 99999 889999999998764221 1222356778999999999999999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCe------eeEE-
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK------LSLR- 264 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~------~~~~- 264 (491)
|++|++.+...... ... ...+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....
T Consensus 91 v~vw~~~~~~~~~~-~~~-----------~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 158 (416)
T 2pm9_A 91 LELYSTNEANNAIN-SMA-----------RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP 158 (416)
T ss_dssp EEEECCSSTTSCCC-EEE-----------ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC
T ss_pred EEEeeccccccccc-chh-----------hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc
Confidence 99999987221100 000 11247779999999998 8999999999999999999876 3332
Q ss_pred --EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc------cccEEEEEEcCCC-CEEEEee
Q 011216 265 --ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------LEGITFIDSRGDG-RYLISNG 335 (491)
Q Consensus 265 --~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~i~~i~~sp~~-~~l~~~~ 335 (491)
+..|...|.+++|+|..+.+|++++.|+.|++||++ ..+.+..+..+ ...|.+++|+|++ .+|++++
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----AKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----TTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----CCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 357999999999995448999999999999999998 66777777666 7889999999997 6899999
Q ss_pred CCC---cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc-ccceeeeeEEEEecCcccC-CC
Q 011216 336 KDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYST-GQ 410 (491)
Q Consensus 336 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~-~~ 410 (491)
.|+ .|++||+++.. ..+..+. +|.. . ..+++|+| ++
T Consensus 235 ~d~~~~~i~~~d~~~~~---------------------------------~~~~~~~~~~~~--~----v~~~~~s~~~~ 275 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNAN---------------------------------TPLQTLNQGHQK--G----ILSLDWCHQDE 275 (416)
T ss_dssp CCSSSCCCCEEETTSTT---------------------------------SCSBCCCSCCSS--C----EEEEEECSSCS
T ss_pred CCCCCceEEEEeCCCCC---------------------------------CCcEEeecCccC--c----eeEEEeCCCCC
Confidence 998 99999998742 1222233 3432 1 23346677 89
Q ss_pred cEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCC-CeEEEEECCCcEEEecCCCCCCCC
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
++|++++.||.|++||+.+++.+..+..|...|.+++|+|++ .+|++++.||.|++|++.......
T Consensus 276 ~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 276 HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 999999999999999999999999999999999999999999 799999999999999998876443
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4e-39 Score=299.90 Aligned_cols=291 Identities=20% Similarity=0.266 Sum_probs=241.0
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
+.++|.+++|+|||++++++..++.+.+|......... ....|...|.+++|+|++++|++++ ||.|++||+.++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC
Confidence 46789999999999999999888877777655432222 2236788999999999999999998 9999999998776
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe--eeEEEeccCCCeEEEEEecC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDE 280 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~i~~~~~ 280 (491)
......... ..+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.+++|+ +
T Consensus 84 ~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~-~ 151 (337)
T 1gxr_A 84 NKSPVSQLD-----------CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-P 151 (337)
T ss_dssp CCSCSEEEE-----------CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC-T
T ss_pred ceeeeeccc-----------ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC-C
Confidence 433322211 11355689999999999999999999999999999887 556777899999999998 7
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
++++|++++.||.|++||++ ..+.+..+..|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------------ 215 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------------ 215 (337)
T ss_dssp TSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------------
T ss_pred CCCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------------
Confidence 88999999999999999998 77788888899999999999999999999999999999999873
Q ss_pred ceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC
Q 011216 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
..+..+.... . ..+++|+|++++|++++.|+.|++||+.+++.. .+..|.
T Consensus 216 ----------------------~~~~~~~~~~---~----v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~ 265 (337)
T 1gxr_A 216 ----------------------RQLQQHDFTS---Q----IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHE 265 (337)
T ss_dssp ----------------------EEEEEEECSS---C----EEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCS
T ss_pred ----------------------ceEeeecCCC---c----eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCc
Confidence 2233332211 1 233467789999999999999999999887754 567899
Q ss_pred CCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 441 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 441 ~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
..|.+++|+|++++|++++.||.|++|++..+...
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 99999999999999999999999999999887543
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=297.47 Aligned_cols=249 Identities=12% Similarity=0.079 Sum_probs=206.2
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-EeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
..|...|++++|+||+ .|++|+.||+|+|||+.+++.+.. .....+|...|++++|+|++++|++++.|++|++||+.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 4567889999999995 688999999999999998754333 23345788899999999999999999999999999999
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCeeeEEEe--ccCCCeEEEE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVC 276 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~ 276 (491)
+++...... +|...|.+++|++++. +|++++.|+.|++||+.+++....+. .|...+.+++
T Consensus 158 ~~~~~~~~~----------------~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 221 (344)
T 4gqb_B 158 QQVVLSSYR----------------AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221 (344)
T ss_dssp TTEEEEEEC----------------CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred CCcEEEEEc----------------CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence 887654332 5777999999999874 78999999999999999998877764 4566799999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC-CEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
|+|.++++|++|+.||.|++||++ .++.+..+.+|...|++++|+|++ ++|++++.|++|+|||+++
T Consensus 222 ~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-------- 289 (344)
T 4gqb_B 222 WHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-------- 289 (344)
T ss_dssp ECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--------
T ss_pred ecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------
Confidence 997788999999999999999998 778889999999999999999998 5799999999999999986
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc-EEEEEecCCeEEEEECCCcc
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~~ 431 (491)
..+..+.+|... + .+++|+|+++ +|++++.||.|++|++.+..
T Consensus 290 ---------------------------~~~~~~~~H~~~--V----~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 290 ---------------------------SELFRSQAHRDF--V----RDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp ---------------------------CEEEEECCCSSC--E----EEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ---------------------------CcEEEEcCCCCC--E----EEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 344556777632 2 3346677775 67799999999999997654
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-40 Score=315.72 Aligned_cols=297 Identities=14% Similarity=0.133 Sum_probs=221.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~ 198 (491)
..+.+.++|++++|+|+|++||+|+.|+.|++||+.++. .........|...|.+++|+|++++|++++.|+.|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345567899999999999999999999999999999873 1233345678889999999999999999999999999999
Q ss_pred CCCc-cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe---eeEEEec-cCCCeE
Q 011216 199 GSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILA-HTSDVN 273 (491)
Q Consensus 199 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~v~ 273 (491)
.++. ...... ..+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+.. |...|.
T Consensus 85 ~~~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 85 RPDGTWKQTLV--------------LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp ----CCCCEEE--------------CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred CCCCceeeeeE--------------ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 8876 111111 12466799999999999999999999999999999887 3667777 999999
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCccccC--------------CCcceeeeccccccEEEEEEcCCCCEEEEeeCCCc
Q 011216 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~ 339 (491)
+++|+ +++++|++++.|+.|++||++.... .+..+..+ +|...|.+++|+|++++|++++.|+.
T Consensus 151 ~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~ 228 (377)
T 3dwl_C 151 SLDWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS 228 (377)
T ss_dssp EEEEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE
T ss_pred EEEEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc
Confidence 99998 7889999999999999999852211 13344455 89999999999999999999999999
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
|++||+++..... ..+..+.+|... ..+++|+|++++|++|+.+
T Consensus 229 i~iwd~~~~~~~~------------------------------~~~~~~~~~~~~------v~~~~~s~~~~~l~~~~~~ 272 (377)
T 3dwl_C 229 VTIAYPSAPEQPP------------------------------RALITVKLSQLP------LRSLLWANESAIVAAGYNY 272 (377)
T ss_dssp EC-CEECSTTSCE------------------------------EECCCEECSSSC------EEEEEEEETTEEEEEESSS
T ss_pred EEEEECCCCCCcc------------------------------eeeEeecCCCCc------eEEEEEcCCCCEEEEEcCC
Confidence 9999998744211 013344455422 2334677799999999877
Q ss_pred CeEEEEECCCcc--E-------------------------E---------EEe----------------cCCCCCeeeeE
Q 011216 420 SCVYVYDLVSGE--Q-------------------------V---------AAL----------------KYHTSPVRDCS 447 (491)
Q Consensus 420 g~i~iwd~~~~~--~-------------------------~---------~~~----------------~~h~~~v~~~~ 447 (491)
+.+ +|+..... . . ..+ ..|.+.|++++
T Consensus 273 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~ 351 (377)
T 3dwl_C 273 SPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLR 351 (377)
T ss_dssp SEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEE
T ss_pred cEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEe
Confidence 765 66654211 0 0 001 13999999999
Q ss_pred ecCCCC----eEEEEECCCcEEEecC
Q 011216 448 WHPSQP----MLVSSSWDGDVVRWEF 469 (491)
Q Consensus 448 ~s~~~~----~l~s~~~Dg~i~iw~~ 469 (491)
+.+... .|+|++.||.|++||+
T Consensus 352 ~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 352 PYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccCCCCCceEEEEeecCCCcEEEecC
Confidence 776543 5999999999999986
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.5e-39 Score=302.06 Aligned_cols=283 Identities=14% Similarity=0.153 Sum_probs=197.7
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec------CCeEEEEECCCC
Q 011216 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------SPIVHIVDVGSG 201 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~------dg~i~iwd~~~~ 201 (491)
..+.+.+++.++.+ ..+.....|++... ....|...|++++|+|||++|++++. |+.|++|+..++
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~~-------~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPVT-------APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp ---------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred cCCCCCccceEEec-CCCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCC
Confidence 34566666655444 44667889987643 22468889999999999999999997 778999998877
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE----EEeccCCCeEEEEE
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCF 277 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~i~~ 277 (491)
.......... .+|...|.+++|+|+++ +++++.||.|++||+.+++... ...+|...|++++|
T Consensus 81 ~~~~~~~~~~------------~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~ 147 (357)
T 4g56_B 81 APNESLCTAG------------VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147 (357)
T ss_dssp --CGGGCSEE------------EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEE
T ss_pred CcceeEeccc------------CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEE
Confidence 5433222111 13556899999999985 6677889999999998876542 33479999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC-EEEEeeCCCcEEEeeCCCCCCcccccc
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
+ +++++|++|+.|+.|++||++ .++.+..+.+|...|++++|+|++. ++++++.|+.|++||+++......
T Consensus 148 s-pdg~~l~sgs~dg~v~iwd~~----~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--- 219 (357)
T 4g56_B 148 F-SDGTQAVSGGKDFSVKVWDLS----QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--- 219 (357)
T ss_dssp C-SSSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB---
T ss_pred C-CCCCEEEEEeCCCeEEEEECC----CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee---
Confidence 8 789999999999999999998 7888899999999999999999875 789999999999999987543221
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC-CcEEEEEecCCeEEEEECCCccEEEE
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iwd~~~~~~~~~ 435 (491)
+..+.....+.. .+|+|+ +.+|++|+.|+.|++||+.+++.+..
T Consensus 220 -------------------------------~~~~~~~~~v~~----v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 220 -------------------------------IDFCASDTIPTS----VTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp -------------------------------CCCTTCCSCEEE----EEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred -------------------------------eeeccccccccc----hhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 111111112222 245555 67899999999999999999999999
Q ss_pred ecCCCCCeeeeEecCCC-CeEEEEECCCcEEEecCCCCCC
Q 011216 436 LKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 436 ~~~h~~~v~~~~~s~~~-~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+.+|...|++++|+|++ ++|++++.||+|+|||+..++.
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 99999999999999997 5899999999999999987654
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-38 Score=302.91 Aligned_cols=292 Identities=13% Similarity=0.157 Sum_probs=233.3
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+..| ..+....|+|++++|++|+.||.|++||+.++.... ....|...|++++|+|++++|++++.|+.|++|
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 166 (420)
T 3vl1_A 91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166 (420)
T ss_dssp TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3444455 556666899999999999999999999999874433 346788899999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec---cCCCeE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVN 273 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~ 273 (491)
|+.+++...... +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.. |...|.
T Consensus 167 d~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 167 SVKDGSNPRTLI----------------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp ETTTCCCCEEEE----------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred eCCCCcCceEEc----------------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence 999876543322 4667999999999999999999999999999999998888864 445556
Q ss_pred EEEEec--------------------CCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCC-EE
Q 011216 274 TVCFGD--------------------ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGR-YL 331 (491)
Q Consensus 274 ~i~~~~--------------------~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~-~l 331 (491)
+++|.+ +++++|++|+.||.|++||++ .......+ ..|...|.+++|+|+++ +|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 306 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF----SKEQTIQLPSKFTCSCNSLTVDGNNANYI 306 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT----TCCEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC----CCceeEEcccccCCCceeEEEeCCCCCEE
Confidence 555531 678899999999999999998 55555554 45888999999999998 99
Q ss_pred EEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc
Q 011216 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
++++.||.|++||+++.. ..+..+.++.. ..+... ++++++
T Consensus 307 ~~g~~dg~i~vwd~~~~~---------------------------------~~~~~~~~~~~--~~v~~~----~~~~~~ 347 (420)
T 3vl1_A 307 YAGYENGMLAQWDLRSPE---------------------------------CPVGEFLINEG--TPINNV----YFAAGA 347 (420)
T ss_dssp EEEETTSEEEEEETTCTT---------------------------------SCSEEEEESTT--SCEEEE----EEETTE
T ss_pred EEEeCCCeEEEEEcCCCc---------------------------------CchhhhhccCC--CCceEE----EeCCCC
Confidence 999999999999998743 22444444221 111111 233688
Q ss_pred EEEEEecCCeEEEEECCCc---------cEEEEecCCCCCeeeeEecCCCC---eEEEEECCCcEEEecCCC
Q 011216 412 YIYTGSHDSCVYVYDLVSG---------EQVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 412 ~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~Dg~i~iw~~~~ 471 (491)
+|++++.||.|++||+... .....+..|.+.|.+++|+|+++ .|++++.+|.+.+|++..
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999999999998763 22234557889999999999999 788888999999999865
No 47
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.1e-38 Score=287.40 Aligned_cols=260 Identities=18% Similarity=0.184 Sum_probs=206.1
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC--CceEEEEecCCeEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIV 196 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~~~dg~i~iw 196 (491)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+..+.. .......+|...|.+++|+|+ +++|++++.|++|++|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 4578999999999999999999999999999999975311 112244688889999999874 8999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEEecCCeEEEEECCCCee--eEEEeccCCCe
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKL--SLRILAHTSDV 272 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~v 272 (491)
|+.+++....... .+|...|.+++|+|+ +.+|++++.|+.|++||+.++.. ...+.+|...|
T Consensus 83 d~~~~~~~~~~~~--------------~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v 148 (297)
T 2pm7_B 83 KEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (297)
T ss_dssp EBSSSCBCCCEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE
T ss_pred EcCCCceEEEEEe--------------ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc
Confidence 9987653222111 146668999999997 88999999999999999987632 35667899999
Q ss_pred EEEEEecC------------CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC---CEEEEeeCC
Q 011216 273 NTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD 337 (491)
Q Consensus 273 ~~i~~~~~------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~~~~~d 337 (491)
.+++|+|. ++++|++|+.|++|++||++...........+.+|...|.+++|+|++ ++|++++.|
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 99999853 257999999999999999972211112556788999999999999984 788888899
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
++|++||++... +..
T Consensus 229 ~~v~iWd~~~~~------------------------------------------------------------~~~----- 243 (297)
T 2pm7_B 229 RTCIIWTQDNEQ------------------------------------------------------------GPW----- 243 (297)
T ss_dssp SCEEEEEESSTT------------------------------------------------------------SCC-----
T ss_pred CcEEEEEeCCCC------------------------------------------------------------Ccc-----
Confidence 999999876411 000
Q ss_pred cCCeEEEEECCCccEEEE--ecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 418 HDSCVYVYDLVSGEQVAA--LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.... ...|...|.+++|+|++++|++++.||.|++|+....
T Consensus 244 --------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 244 --------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp --------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred --------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 0001 1346788999999999999999999999999998643
No 48
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-38 Score=342.43 Aligned_cols=336 Identities=20% Similarity=0.245 Sum_probs=265.2
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+.+|.+.|++++|+|||++||+|+.||.|++||+.++..+.. ..+|...|.+++|+|++++|++++.|+.|++|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 345679999999999999999999999999999999999866554 35788899999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 274 (491)
|+.+++...... +|...|.+++|+| ++..+++|+.|+.|++||+.+++....+.+|...|++
T Consensus 685 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~ 748 (1249)
T 3sfz_A 685 DSATGKLVHTYD----------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH 748 (1249)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred ECCCCceEEEEc----------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence 999887654332 4666899999999 5568999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCC-------------------------------------------------
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVK------------------------------------------------- 305 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------------------------------------------------- 305 (491)
++|+ +++++|++++.||.|++||++.....
T Consensus 749 ~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 749 CRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 9998 78999999999999999998632100
Q ss_pred -Cccee-eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccC-CCC
Q 011216 306 -GKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCD 382 (491)
Q Consensus 306 -~~~~~-~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 382 (491)
+.... ...+|...|.+++|+|+++++++++.|+.|++||+.+........ .+...+..+.+.+++..+.. ..+
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~----~h~~~v~~v~~spdg~~l~s~s~d 903 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR----GHLSWVHGVMFSPDGSSFLTASDD 903 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC----CCccceEEEEECCCCCEEEEEeCC
Confidence 00011 112677889999999999999999999999999998754433221 12223444445554433322 223
Q ss_pred CeeEEEcccc----------------------------------------e--eeeeEEEEecCcccCCCcEEEEEecCC
Q 011216 383 QSVATYKGHS----------------------------------------V--LRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 383 ~~~~~~~~~~----------------------------------------~--~~~~~~~~~~~~~s~~~~~l~~g~~dg 420 (491)
..+..+.... . .........+.+++|+++++++|+.+|
T Consensus 904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g 983 (1249)
T 3sfz_A 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG 983 (1249)
T ss_dssp SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence 3344433110 0 000001123456888999999999999
Q ss_pred eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 421 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
.|++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|++.++....
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 99999999999999999999999999999999999999999999999998875443
No 49
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-38 Score=330.77 Aligned_cols=204 Identities=12% Similarity=0.111 Sum_probs=173.4
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
..+|.+.|++++|+|+|++||+|+.||.|+||+..+...... ..|...|.+++|+| +++|++++.|++|++||+.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 357899999999999999999999999999999987644322 24567899999999 8899999999999999999
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee-----------EEEecc
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRILAH 268 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~ 268 (491)
+++...... |...|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|
T Consensus 88 ~~~~~~~~~-----------------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 88 SQKVLTTVF-----------------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp TCSEEEEEE-----------------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred CCcEEEEEc-----------------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 887643332 2237999999999999999999999999999988753 223568
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc------------------cccEEEEEEcCCCCE
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------------LEGITFIDSRGDGRY 330 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------------------~~~i~~i~~sp~~~~ 330 (491)
.+.|.+++|+|.++..|++|+.||.| +||++ ..+.+..+..| ...|++++|+|+|++
T Consensus 151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV----ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp CCCCCEEEEETTEEEEEEEECSSCEE-EEETT----TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred CCCeEEEEEccCCCCEEEEEeCCCcE-EEECC----CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 89999999996567899999999999 99998 56666666544 577999999999999
Q ss_pred EEEeeCCCcEEEeeCCCCCC
Q 011216 331 LISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~ 350 (491)
|++++.|+.|++||+++.+.
T Consensus 226 lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp EEEEETTCCEEEEETTTCCE
T ss_pred EEEEECCCeEEEEECCCCcE
Confidence 99999999999999987543
No 50
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-37 Score=289.13 Aligned_cols=248 Identities=20% Similarity=0.294 Sum_probs=213.3
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
...+|...|.+++|+|++++|++++.||+|++||+.+++...... .|...|.+++|+|++++|+
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~ 113 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP----------------LRSSWVMTCAYAPSGNYVA 113 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----------------CSSSCEEEEEECTTSSEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee----------------cCCccEEEEEECCCCCEEE
Confidence 446788899999999999999999999999999998877543322 2555899999999999999
Q ss_pred EEecCCeEEEEECCCC----eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccE
Q 011216 244 AGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
+|+.|+.|++||+.+. .....+.+|.+.|.++.|+ +++ .+++++.|+.|++||++ .+..+..+.+|...|
T Consensus 114 s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~s~d~~i~~wd~~----~~~~~~~~~~h~~~v 187 (340)
T 1got_B 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDN-QIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDV 187 (340)
T ss_dssp EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEE-ETT-EEEEEETTSCEEEEETT----TTEEEEEECCCSSCE
T ss_pred EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEEC-CCC-cEEEEECCCcEEEEECC----CCcEEEEEcCCCCce
Confidence 9999999999999875 3456677999999999997 444 58999999999999998 778888999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEE
Q 011216 320 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 399 (491)
Q Consensus 320 ~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (491)
.+++|+|++++|++++.|+.|++||+++ ...+..+.+|....
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~----------------------------------~~~~~~~~~h~~~v---- 229 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVRE----------------------------------GMCRQTFTGHESDI---- 229 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----------------------------------CSEEEEECCCSSCE----
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCC----------------------------------CeeEEEEcCCcCCE----
Confidence 9999999999999999999999999987 35566677776322
Q ss_pred EEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC--CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 400 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 400 ~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+.+|+|++++|++|+.||.|++||+.+++.+..+.. +...|++++|+|++++|++|+.||.|++||+....
T Consensus 230 --~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 230 --NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp --EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred --EEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 2336778999999999999999999999888877652 33579999999999999999999999999987654
No 51
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=305.35 Aligned_cols=310 Identities=15% Similarity=0.251 Sum_probs=226.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--------EEEEeeccCCc------------eeEEEeEeCCCC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLR------------WTVTDTSLSPDQ 181 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~------------~~v~~l~~sp~~ 181 (491)
.+.+.|++++|+|+|++||+|+.||.|+||++.++.. ........+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 4678999999999999999999999999999987642 11122334665 779999999998
Q ss_pred --ceEEEEecCCeEEEEECCCCccccccceecccc----------ccccc--------------cCCCCCceecEEEEEE
Q 011216 182 --RHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----------GLDFS--------------AADDGGYSFGIFSLKF 235 (491)
Q Consensus 182 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~--------------~~~~~~h~~~v~~i~~ 235 (491)
.+|++++.|+.|++||+.++............. .+.++ .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999987644321000000000 00000 0012468889999999
Q ss_pred cCCCCEEEEEecCCeEEEEECCCC-eeeE-------EEeccCCCeEEEEEecCCC-CEEEEEeCCCeEEEEeCccccCCC
Q 011216 236 STDGRELVAGSSDDCIYVYDLEAN-KLSL-------RILAHTSDVNTVCFGDESG-HLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 236 s~~~~~l~~~~~dg~i~vwd~~~~-~~~~-------~~~~~~~~v~~i~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
+|++++|++| .|+.|++||+.+. +... .+.+|...|.+++|+ +++ ++|++|+.||.|++||++......
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 9999999998 7999999999844 3333 245899999999998 555 999999999999999998332222
Q ss_pred cceeeeccccc------------cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCc
Q 011216 307 KPAGVLMGHLE------------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 307 ~~~~~~~~~~~------------~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
..+..+..|.. .|.+++|+|++++|++++. +.|++||++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------------------------- 317 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------------------------- 317 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS-------------------------
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc-------------------------
Confidence 22677777776 8999999999999999999 999999998621
Q ss_pred ccccCCCCCeeEEEcccceeee---------eEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec--------
Q 011216 375 RDLKHPCDQSVATYKGHSVLRT---------LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------- 437 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------- 437 (491)
..+..+.+|..... .+...+..+|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 318 --------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~ 388 (447)
T 3dw8_B 318 --------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKP 388 (447)
T ss_dssp --------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCT
T ss_pred --------cccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccc
Confidence 23333444432111 00001234688899999999999999999999887753 22
Q ss_pred -------------------------CCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 438 -------------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 -------------------------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
.+...|.+++|+|++++||+++.++ +++|.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 389 RTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345688999999999999998876 777764
No 52
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.3e-38 Score=326.83 Aligned_cols=294 Identities=18% Similarity=0.243 Sum_probs=250.5
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
...+.+|.+.|.+++|+|+|++||+|+.||.|+|||+.++..+... ..|...|.+++|+|++++|++++.||.|++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI---QVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE---ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4567899999999999999999999999999999999998655543 4677799999999999999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEeccCCCeEEE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTV 275 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~i 275 (491)
|+.+++...... +|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.++
T Consensus 83 ~~~~~~~~~~~~----------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 83 NYNTGEKVVDFE----------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp ETTTCCEEEEEE----------------CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred ECCCCcEEEEEe----------------cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 999887644332 36668999999999999999999999999999887 6677788999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc-ccEEEEEEcC--CCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~i~~i~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
+|+|.+++.|++++.||.|++||++ .......+..+. ..+.+++|+| ++.+|++++.||.|++||+++
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~----- 217 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLG----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----- 217 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETT----CSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-----
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----CCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-----
Confidence 9995488999999999999999997 555555555444 8899999999 999999999999999999987
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~ 432 (491)
...+..+.+|... ..+++|+|++++|++++.||.|++||+.+++.
T Consensus 218 -----------------------------~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 218 -----------------------------KSCVATLEGHMSN------VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp -----------------------------TEEEEEEECCSSC------EEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred -----------------------------CcEEEEEcCCCCC------EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3455666666522 22336778999999999999999999999999
Q ss_pred EEEecCCCCCeeeeEecCCCCe-EEEEECCCcEEEecCCCCC
Q 011216 433 VAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 433 ~~~~~~h~~~v~~~~~s~~~~~-l~s~~~Dg~i~iw~~~~~~ 473 (491)
+..+..|...+.+++|+|++.. +++++.|+.+.+|++....
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC
Confidence 9999999999999999999973 3445557778999987654
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6e-39 Score=308.40 Aligned_cols=283 Identities=15% Similarity=0.216 Sum_probs=227.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccc
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (491)
.+++++|+|+|++|++++.||.|++||+.++... .....+ ..+....|+|++++|++++.|+.|++||+.+++...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee---eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence 3557899999999999999999999999875221 122233 345556789999999999999999999998776543
Q ss_pred ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEE
Q 011216 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (491)
... +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|
T Consensus 134 ~~~----------------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 196 (420)
T 3vl1_A 134 IDQ----------------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNV 196 (420)
T ss_dssp ETT----------------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEE
T ss_pred ecc----------------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEE
Confidence 321 477799999999999999999999999999999999999999999999999998 789999
Q ss_pred EEEeCCCeEEEEeCccccCCCcceeeecc---ccccE---------------------EEEEEcCCCCEEEEeeCCCcEE
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HLEGI---------------------TFIDSRGDGRYLISNGKDQAIK 341 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---~~~~i---------------------~~i~~sp~~~~l~~~~~dg~i~ 341 (491)
++++.|+.|++||++ .++.+..+.. |...+ .+++|+|++++|++++.||.|+
T Consensus 197 ~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 272 (420)
T 3vl1_A 197 LSASLDGTIRLWECG----TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVIT 272 (420)
T ss_dssp EEEETTSCEEEEETT----TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEE
T ss_pred EEEcCCCcEEEeECC----CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEE
Confidence 999999999999998 6666666654 33344 4455688999999999999999
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc-ccceeeeeEEEEecCcccCCCc-EEEEEecC
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQK-YIYTGSHD 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~d 419 (491)
+||+++. ..+..+. .|.. . ..+++|+|++. +|++|+.|
T Consensus 273 i~d~~~~----------------------------------~~~~~~~~~~~~--~----v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 273 VHNVFSK----------------------------------EQTIQLPSKFTC--S----CNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp EEETTTC----------------------------------CEEEEECCTTSS--C----EEEEEECSSCTTEEEEEETT
T ss_pred EEECCCC----------------------------------ceeEEcccccCC--C----ceeEEEeCCCCCEEEEEeCC
Confidence 9999873 2233332 2331 1 23346677888 99999999
Q ss_pred CeEEEEECCCccE-EEEecC-CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 420 SCVYVYDLVSGEQ-VAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 420 g~i~iwd~~~~~~-~~~~~~-h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
|.|++||+.+++. +..+.. |...|.++.| +++++|++++.||.|++|++.....
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 9999999998754 677766 6677888755 5788999999999999999987544
No 54
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.7e-38 Score=295.56 Aligned_cols=311 Identities=14% Similarity=0.085 Sum_probs=224.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeeccCCceeEEEeEeCC--CCceEEEEecCCeE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIV 193 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~dg~i 193 (491)
...+.+|.+.|++++|+|++++||+|+.||.|++||+.++... ........|...|.+++|+| ++++|++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3456899999999999999999999999999999999865321 22233457888999999999 69999999999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEEecCCeEEEEECCCCeeeEEEe-----
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRIL----- 266 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~----- 266 (491)
++||+.++............ ....+|...|.+++|+|+ +++|++++.||.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 156 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKL-------CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM 156 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEE-------EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred EEEecCCCcccccccCccee-------eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence 99999887542211000000 001246679999999999 9999999999999999998876544332
Q ss_pred --------ccCCCeEEEEEecC--CCCEEEEEeCCCeEEEEeCccccCCCc--ceeeeccccccEEEEEEcCCC----CE
Q 011216 267 --------AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDG----RY 330 (491)
Q Consensus 267 --------~~~~~v~~i~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~i~~i~~sp~~----~~ 330 (491)
.|...+.+++|+|. ++.++++++.++.+.+|+.. ... .+..+.+|...|++++|+|++ ++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK----DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT----TSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC----CCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 57889999999843 48899999999999888875 333 366778899999999999998 89
Q ss_pred EEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC
Q 011216 331 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
|++++.||.|++||++........ .... .........+......
T Consensus 233 l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 233 IATGCKDGRIRIFKITEKLSPLAS----------------------------------EESL--TNSNMFDNSADVDMDA 276 (351)
T ss_dssp EEEEETTSCEEEEEEEECC-------------------------------------------------------------
T ss_pred EEEEcCCCeEEEEeCCCCcCcccc----------------------------------CCcc--cceeccCCCccccccc
Confidence 999999999999999864221110 0000 0000000111111111
Q ss_pred cEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.....+.....+.+|+....+.+..+.+|...|++++|+|++++|++++.||.|++|++..+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 1222333455677788778888999999999999999999999999999999999999987653
No 55
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2e-37 Score=312.66 Aligned_cols=335 Identities=16% Similarity=0.177 Sum_probs=254.4
Q ss_pred CCCccccCCCCc-eEEEEEcC--CCCEEEEEECCCeEEEEECCCCe-----EEEEEeeccCCceeEEEeEeCCCCceEEE
Q 011216 115 NGPWPVDQTTSR-AYVSQFSA--DGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVY 186 (491)
Q Consensus 115 ~~~~~~~~h~~~-v~~~~~s~--dg~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~~v~~l~~sp~~~~l~~ 186 (491)
.....+.+|... |++++|+| ++++||+|+.||.|++||+.++. ..........|...|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 455678899999 99999999 99999999999999999997540 11222233557778999999999999999
Q ss_pred EecC----CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCee
Q 011216 187 ASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 187 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~ 261 (491)
++.+ +.|.+|| .++..... .+|...|.+++|+|+++ .+++++.|+.|++||+.+++.
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~ 195 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEV----------------SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 195 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEEC----------------CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred eccCCCCccEEEEEE--CCCcceee----------------ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce
Confidence 9987 6888888 33322211 24677999999999998 899999999999999999999
Q ss_pred eEEEeccCC---CeEEEEEecCC-CCEEEEEeCCCeEEEEeCccccCCCcceeee-c---cccccEEEEEEcCCCCEEEE
Q 011216 262 SLRILAHTS---DVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M---GHLEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 262 ~~~~~~~~~---~v~~i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~---~~~~~i~~i~~sp~~~~l~~ 333 (491)
+..+..|.. .|.+++|+ ++ +++|++++.||.|++||++ .++.+..+ . .|...|.+++|+ ++++|++
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 269 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDGK----SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFAT 269 (615)
T ss_dssp EEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEETT----TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEE
T ss_pred eeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEECC----CCCEeEEecccccccCCceEEEEEc-CCCEEEE
Confidence 999999999 99999998 66 9999999999999999997 77777777 5 899999999999 9999999
Q ss_pred eeCCCcEEEeeCCCCCCccccccCc-------------------------ccceeec-----------------------
Q 011216 334 NGKDQAIKLWDIRKMSSNASCNLGF-------------------------RSYEWDY----------------------- 365 (491)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~----------------------- 365 (491)
++.|+.|++||+++........... ....|+.
T Consensus 270 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 349 (615)
T 1pgu_A 270 VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP 349 (615)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTT
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecC
Confidence 9999999999998754332221110 0000110
Q ss_pred --------------------------eeecCCCCcccccCCC--------------------------------------
Q 011216 366 --------------------------RWMDYPPQARDLKHPC-------------------------------------- 381 (491)
Q Consensus 366 --------------------------~~~~~~~~~~~~~~~~-------------------------------------- 381 (491)
..+.+++....+....
T Consensus 350 l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 429 (615)
T 1pgu_A 350 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDL 429 (615)
T ss_dssp TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEE
T ss_pred cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCce
Confidence 0011110111110000
Q ss_pred ------------------------------------CCeeEEEcccceee------eeEEEEecCcccCCCcEEEEEecC
Q 011216 382 ------------------------------------DQSVATYKGHSVLR------TLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 382 ------------------------------------~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
+..+..+....... .......+++|+|++++|++++.|
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 509 (615)
T 1pgu_A 430 LILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 509 (615)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence 11111111110000 000112345688999999999999
Q ss_pred CeEEEEECCCccEEEEecC-CCCCeeeeEecC----------CCCeEEEEECCCcEEEecCCCCC
Q 011216 420 SCVYVYDLVSGEQVAALKY-HTSPVRDCSWHP----------SQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~-h~~~v~~~~~s~----------~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
|.|++||+.+++.+..+.+ |...|++++|+| ++++|++++.||.|++|++..+.
T Consensus 510 g~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 574 (615)
T 1pgu_A 510 GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 574 (615)
T ss_dssp SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred CeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc
Confidence 9999999999999999988 999999999999 99999999999999999998864
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.6e-38 Score=292.93 Aligned_cols=296 Identities=13% Similarity=0.099 Sum_probs=235.4
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCc-eEEEEecCCeEEEEEC
Q 011216 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV 198 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~dg~i~iwd~ 198 (491)
..+|.+.|++++|+|++++|++++.||.|++|++.++...........|...|.+++|+|+++ +|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 357999999999999999999999999999999987751111222336777999999999999 9999999999999999
Q ss_pred -CCCccccccceeccccccccccCCCCC--ceecEEEEEEcCCCCEEEEEecCCeEEEEECCC---------CeeeEEEe
Q 011216 199 -GSGTMESLANVTEIHDGLDFSAADDGG--YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRIL 266 (491)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~ 266 (491)
.+++.... .+ |...|.+++|+| +++|++++.|+.|++||+.+ ++++..+.
T Consensus 87 ~~~~~~~~~-----------------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 87 IGSPSFQAL-----------------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SSSSSEEEC-----------------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred ccCCceEec-----------------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 87754211 13 666899999999 99999999999999999987 66666664
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcc-ccCCCcceeeeccccccEEEEEEcC-CCCEEEEeeCCCcEEEee
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC-LNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd 344 (491)
|...|.+++|+ +++ +++++.|+.|++||++. .. .........|...+.+++|+| +++++++++.||.|++|+
T Consensus 149 -~~~~v~~~~~~-~~~--l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 149 -VKNKIFTMDTN-SSR--LIVGMNNSQVQWFRLPLCED--DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp -SCCCEEEEEEC-SSE--EEEEESTTEEEEEESSCCTT--CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred -eCCceEEEEec-CCc--EEEEeCCCeEEEEECCcccc--ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 88999999998 444 99999999999999973 11 223334556888999999999 999999999999999999
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee---eeEEEEecCcccCCCcEEEEEecCCe
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSC 421 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~ 421 (491)
++....... ......+..|.... .......+++|+|++++|++++.||.
T Consensus 223 ~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 223 FDDQGDDYN----------------------------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274 (342)
T ss_dssp CCTTCCSTT----------------------------CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred EcCCCcccc----------------------------cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce
Confidence 987410000 03334444443200 00011233467779999999999999
Q ss_pred EEEEECCCccEEEEecCC-CCCeeeeEecCCCCeEEEEECCCc-EEEecC
Q 011216 422 VYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDGD-VVRWEF 469 (491)
Q Consensus 422 i~iwd~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~Dg~-i~iw~~ 469 (491)
|++||+.+++.+..+.+| ..+|.+++ |++++|++++.||. .+.|..
T Consensus 275 i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 275 ISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 999999999999999998 99999999 99999999999998 666664
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-39 Score=312.73 Aligned_cols=294 Identities=11% Similarity=0.032 Sum_probs=218.6
Q ss_pred ccCCCCceEEEEEcCC------CCEEEEEECCCeEEEEECCCCeEE-----E---EEeeccCCceeEEEeEeCCCCceEE
Q 011216 120 VDQTTSRAYVSQFSAD------GSLFVAGFQASQIRIYDVERGWKI-----Q---KDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~d------g~~l~~~~~dg~i~vw~~~~~~~~-----~---~~~~~~~~~~~v~~l~~sp~~~~l~ 185 (491)
+.+|.+.|.+++|+|+ +.+||+++.||+|+|||+.++... . ......+|...|++++|+|++ .|+
T Consensus 203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la 281 (524)
T 2j04_B 203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV 281 (524)
T ss_dssp EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE
T ss_pred EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE
Confidence 5678899999999997 579999999999999999865311 0 012345677899999999865 799
Q ss_pred EEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEE--EEcCCC-CEEEEEecCCeEEEEECCCCeee
Q 011216 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL--KFSTDG-RELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i--~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
+|+.||+|++||+.++..... .. .+|...|.++ +|+|++ .+|++++.|++|+|||+++++..
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~-~~--------------~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSF-YD--------------QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSE-EE--------------ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred EEeCCCEEEEEECCCCCCceE-Ee--------------ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 999999999999987632111 00 1477799999 578887 89999999999999999998887
Q ss_pred EEEeccCC--CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcE
Q 011216 263 LRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 263 ~~~~~~~~--~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i 340 (491)
..+.+|.. .|.+++|+ |++..|++++.|++|++||++ .+..+..+.+|...|++|+|+|++++|++|+.|++|
T Consensus 347 ~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~----~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSR----AAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp CEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETT----CTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred cccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECc----ccccceeeecCCCceEEEEeCCCCCeEEEEECCCEE
Confidence 77777754 58899998 778889999999999999998 666777888999999999999999999999999999
Q ss_pred EEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC
Q 011216 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 420 (491)
++||+.... +...+.... .......+..+|+|+++.+. ...
T Consensus 422 ~lwd~~~~~-----------------------------------~~~~~~~~~-~~~~~~v~~v~~sp~g~~~~-~~~-- 462 (524)
T 2j04_B 422 IITNAARRL-----------------------------------LHGIKNSSA-TQKSLRLWKWDYSIKDDKYR-IDS-- 462 (524)
T ss_dssp ECCBSCSST-----------------------------------TTCC-------CCCCEEEECBCCSSSCEEE-ECC--
T ss_pred EEEechHhh-----------------------------------ccccccCcc-ceeeeEEEEeccCCCCCeEE-ccC--
Confidence 999986421 000000000 00001235668889998553 222
Q ss_pred eEEEEECC-CccEEEEecCCCCCeeeeEecCCCC---eEEEEECCCcEEEecCCCCC
Q 011216 421 CVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 421 ~i~iwd~~-~~~~~~~~~~h~~~v~~~~~s~~~~---~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+.+|+.. ++..+..+.+|...|.+|+|+|+++ +||+|+.||.|+||++....
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 23444432 5777888999999999999999965 99999999999999987653
No 58
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=289.91 Aligned_cols=258 Identities=16% Similarity=0.196 Sum_probs=210.2
Q ss_pred eccCCce-eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 164 LAKSLRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 164 ~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
...+|.. .|.+++|+|++++|++++.|++|+|||+.++........ ..+|...|.+++|+|++++|
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-------------~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-------------SEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-------------CSSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-------------ccccCCcEEEEEECCCCCEE
Confidence 3456665 899999999999999999999999999987653222111 12577799999999999999
Q ss_pred EEEecCCeEEEEECCCCe--eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEE
Q 011216 243 VAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
++|+.|+.|++||+..+. .+..+.+|...|.+++|+ +++++|++|+.|+.|++||++... ....+..+.+|...|.
T Consensus 77 ~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVK 154 (345)
T ss_dssp EEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTS-CEEEEEEECCCCSCEE
T ss_pred EEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCC-CeEEEEEecCcCCCeE
Confidence 999999999999998764 567788999999999998 789999999999999999997221 2234567788999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEE
Q 011216 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
+++|+|++++|++++.|+.|++||++.... .....+.+|...
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~--------------------------------~~~~~~~~h~~~------ 196 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDW--------------------------------VCCATLEGHEST------ 196 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEE--------------------------------EEEEEECCCSSC------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCE--------------------------------EEEEEecCCCCc------
Confidence 999999999999999999999999875210 234556666532
Q ss_pred EecCcccCCCcEEEEEecCCeEEEEECCCc---------------cEEEEecC-CCCCeeeeEecCCCCeEEEEECCCcE
Q 011216 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---------------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---------------~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~Dg~i 464 (491)
+.+++|+|++++|++|+.|+.|++||.... +++..+.+ |...|.+++|+|++..|++++.|+.|
T Consensus 197 v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i 276 (345)
T 3fm0_A 197 VWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE
Confidence 234467889999999999999999996321 23445554 88999999999999999999999999
Q ss_pred EEecCCCCCC
Q 011216 465 VRWEFPGNGE 474 (491)
Q Consensus 465 ~iw~~~~~~~ 474 (491)
++|+......
T Consensus 277 ~vw~~~~~~~ 286 (345)
T 3fm0_A 277 RVFQEDPNSD 286 (345)
T ss_dssp EEEEECTTSC
T ss_pred EEEEeCCCCC
Confidence 9999876543
No 59
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.4e-37 Score=297.29 Aligned_cols=284 Identities=26% Similarity=0.394 Sum_probs=231.9
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
.+|...|+|++| ++++|++|+.||.|++||+.+++.... ..+|...|.+++| ++++|++|+.||.|++||+.+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRI---LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEE---ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEE---EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 456778998887 789999999999999999998865543 3578889999999 789999999999999999998
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee---EEEeccCCCeEEEEE
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCF 277 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~i~~ 277 (491)
++...... +|...|.+++|+ +..+++|+.||.|++||+.++... ..+.+|...|.+++|
T Consensus 203 ~~~~~~~~----------------~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 203 GEMLNTLI----------------HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp CCEEEEEC----------------CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred CcEEEEEc----------------CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 87643322 466689999997 458999999999999999987765 567789999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
++++|++|+.||.|++||++ .+..+..+.+|...|.++.++ ++++++++.||.|++||+++
T Consensus 265 ---~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~---------- 325 (435)
T 1p22_A 265 ---DDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC---------- 325 (435)
T ss_dssp ---ETTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT----------
T ss_pred ---CCCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC----------
Confidence 47899999999999999998 778888999999999999994 67999999999999999987
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc------
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE------ 431 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~------ 431 (491)
+..+..+.+|......+ .+ ++.+|++|+.||.|++||+.++.
T Consensus 326 ------------------------~~~~~~~~~h~~~v~~~------~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 373 (435)
T 1p22_A 326 ------------------------GACLRVLEGHEELVRCI------RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA 373 (435)
T ss_dssp ------------------------CCEEEEECCCSSCEEEE------EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred ------------------------CCEEEEEeCCcCcEEEE------Ee--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence 35667777776432221 23 68899999999999999998776
Q ss_pred ---EEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCCCCCCcc
Q 011216 432 ---QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKK 482 (491)
Q Consensus 432 ---~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~~~~~~~ 482 (491)
.+..+.+|.+.|.+++| ++.+|++++.||.|++||+.+...........
T Consensus 374 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~ 425 (435)
T 1p22_A 374 GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRS 425 (435)
T ss_dssp TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--------------
T ss_pred cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCC
Confidence 88899999999999999 78899999999999999998876554433333
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-36 Score=294.91 Aligned_cols=285 Identities=21% Similarity=0.282 Sum_probs=240.2
Q ss_pred ccccCCCCce-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 118 WPVDQTTSRA-YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 118 ~~~~~h~~~v-~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
..+.+|...| .|+.| ++++|++|+.||.|++||+.+++.+.. ..+|...|.+++|+|++ +|++++.||+|++|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 4678898885 66666 578999999999999999999865543 35788899999999988 89999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEc--CCCCEEEEEecCCeEEEEECCCCee-------------
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEANKL------------- 261 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s--~~~~~l~~~~~dg~i~vwd~~~~~~------------- 261 (491)
|+.+++...... +|...|.+++|+ +++++|++++.||.|++||+.++..
T Consensus 189 d~~~~~~~~~~~----------------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 189 DIKKGCCTHVFE----------------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp ETTTTEEEEEEC----------------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred ECCCCcEEEEEC----------------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 999887544322 466799999998 5788999999999999999987653
Q ss_pred ----------eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEE
Q 011216 262 ----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 262 ----------~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l 331 (491)
...+.+|...|.++. ++++++++|+.||.|++||++ ..+.+..+.+|...|.+++|+|++++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l 325 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVA----QMKCLYILSGHTDRIYSTIYDHERKRC 325 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEETTTTEE
T ss_pred eeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCEEEEEEcCCCCEE
Confidence 445668888888885 457899999999999999998 788888999999999999999999999
Q ss_pred EEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc
Q 011216 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
++++.||.|++||+++ +..+..+.+|......+ .+ +++
T Consensus 326 ~sg~~dg~i~vwd~~~----------------------------------~~~~~~~~~h~~~v~~~------~~--~~~ 363 (464)
T 3v7d_B 326 ISASMDTTIRIWDLEN----------------------------------GELMYTLQGHTALVGLL------RL--SDK 363 (464)
T ss_dssp EEEETTSCEEEEETTT----------------------------------TEEEEEECCCSSCEEEE------EE--CSS
T ss_pred EEEeCCCcEEEEECCC----------------------------------CcEEEEEeCCCCcEEEE------EE--cCC
Confidence 9999999999999987 35677777776433222 23 368
Q ss_pred EEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 412 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 412 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
+|++++.||.|++||+.++....... |...+..++|+|++++|++++ ||.|++||+.++...
T Consensus 364 ~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 99999999999999999988776664 677888899999999999998 999999999987654
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=290.21 Aligned_cols=305 Identities=13% Similarity=0.094 Sum_probs=237.6
Q ss_pred cCCCCCccccCCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeCCCCceEEEE
Q 011216 112 LPVNGPWPVDQTTSRAYVSQFSAD---GSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 112 ~~~~~~~~~~~h~~~v~~~~~s~d---g~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 187 (491)
.|......+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+.. ....|...|.+++|+|++++|+++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK--AQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE--EEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE--EeccccCCEEEEEECcCCCEEEEE
Confidence 355555678899999999999999 69999999999999999987 544433 234577799999999999999999
Q ss_pred ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEE--cCCCCEEEEEecCCeEEEEECCCCeeeEEE
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGSSDDCIYVYDLEANKLSLRI 265 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 265 (491)
+.||.|++||+.+++..... +|...|.+++| +|++++|++++.||.|++||+.+++.+..+
T Consensus 105 ~~dg~v~iwd~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 167 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQIA-----------------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167 (368)
T ss_dssp ETTSEEEEEETTTTEEEEEE-----------------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE
T ss_pred cCCCcEEEEEcCCCCceeec-----------------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE
Confidence 99999999999988754422 25568999999 899999999999999999999999988888
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee-eccccccEEEEEEcCCCCE----EEEeeCCCcE
Q 011216 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRY----LISNGKDQAI 340 (491)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~i~~sp~~~~----l~~~~~dg~i 340 (491)
..+. .+.++.+. ...+++++.++.+++|+++... ..... ...+...+.++.+.++... +++++.|+.|
T Consensus 168 ~~~~-~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 168 QLPE-RCYCADVI---YPMAVVATAERGLIVYQLENQP---SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp ECSS-CEEEEEEE---TTEEEEEEGGGCEEEEECSSSC---EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred ecCC-CceEEEec---CCeeEEEeCCCcEEEEEecccc---chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence 6654 67777776 3478899999999999997321 11111 1223344556665555444 9999999999
Q ss_pred EEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee------eeEEEEecCcccCCCcEEE
Q 011216 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR------TLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~l~ 414 (491)
++||++..... ..+..+.+|.... .......+++|+|++++|+
T Consensus 241 ~i~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 289 (368)
T 3mmy_A 241 AIHYINPPNPA-------------------------------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289 (368)
T ss_dssp EEEESSCSCHH-------------------------------HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred EEEecCCCCcc-------------------------------ccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence 99999874210 2233444443210 0001234457788999999
Q ss_pred EEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 415 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+|+.||.|++||+.+++++..+..|..+|++++|+|++++|++++.|+..+.|++....
T Consensus 290 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 290 TVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp EEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred EEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 99999999999999999999999999999999999999999999999877777765443
No 62
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-36 Score=279.80 Aligned_cols=256 Identities=20% Similarity=0.261 Sum_probs=213.8
Q ss_pred EEEEEeeccCCceeEEEeEeCCCC-ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEc
Q 011216 158 KIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (491)
Q Consensus 158 ~~~~~~~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s 236 (491)
.+.......+|.+.|.+++|+|++ ++|++++.|++|++|++............ ...+|...|.+++|+
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~-----------~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR-----------SFKGHSHIVQDCTLT 74 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEE-----------EEECCSSCEEEEEEC
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccce-----------EEeCCcccEEEEEEC
Confidence 344444567899999999999965 89999999999999998643321111110 112577899999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc
Q 011216 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 237 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.|++|++||++ +..+..+.+|.
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~h~ 148 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-----GQCLATLLGHN 148 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-----SCEEEEECCCS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-----CCeEEEEeccC
Confidence 999999999999999999999999999999999999999998 789999999999999999984 56777888999
Q ss_pred ccEEEEEEcCC------CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc
Q 011216 317 EGITFIDSRGD------GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 317 ~~i~~i~~sp~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
..|.++.++|+ +..|++++.|+.|++||++.. +....+.+
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----------------------------------~~~~~~~~ 194 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF----------------------------------QIEADFIG 194 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTT----------------------------------EEEEEECC
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc----------------------------------hhheeecC
Confidence 99999999985 458999999999999999862 44556666
Q ss_pred cceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
|.... .+.+|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .+++|++.
T Consensus 195 h~~~v------~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 195 HNSNI------NTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp CCSCE------EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred CCCcE------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 65322 3346788999999999999999999999999988875 4689999999999999988765 49999987
Q ss_pred CC
Q 011216 471 GN 472 (491)
Q Consensus 471 ~~ 472 (491)
..
T Consensus 267 ~~ 268 (319)
T 3frx_A 267 PQ 268 (319)
T ss_dssp TE
T ss_pred cC
Confidence 54
No 63
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.3e-36 Score=279.87 Aligned_cols=252 Identities=22% Similarity=0.333 Sum_probs=214.3
Q ss_pred eeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
....+|...|++++|+|++++|++++.|+.|++|++.+++...... +|...|.+++|+|++++|
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~----------------~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------GHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----------------CCSSCEEEEEECTTSSEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc----------------cCCCceEEEEEcCCCCEE
Confidence 3456888899999999999999999999999999998876543321 466789999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++|+.|+.|++||++ .++.+..+..|..+|.++
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~ 155 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAV 155 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCEEEEEecCCCCcEEEE
Confidence 999999999999999999999999999999999998 788999999999999999998 778888899999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
+|+|++++|++++.|+.|++||+++. +.+..+..... .. ..
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~----------------------------------~~~~~~~~~~~-~~----~~ 196 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASG----------------------------------QCLKTLIDDDN-PP----VS 196 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTC----------------------------------CEEEEECCSSC-CC----EE
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCC----------------------------------ceeeEEeccCC-Cc----eE
Confidence 99999999999999999999999873 22333321110 01 12
Q ss_pred cCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeee--Eec-CCCCeEEEEECCCcEEEecCCCCCC
Q 011216 403 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC--SWH-PSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~--~~s-~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
..+|+|++++|++++.||.|++||+.+++.+..+.+|...+..+ .++ +++.+|++++.||.|++||+.++..
T Consensus 197 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 23677899999999999999999999999999998887654433 343 6788999999999999999987653
No 64
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-36 Score=288.83 Aligned_cols=250 Identities=24% Similarity=0.360 Sum_probs=208.2
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
+...|.+++|+|||++||+|+.|+.|++||+.++..+. ...+|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe
Confidence 34459999999999999999999999999999885444 346788899999999999999999999999999999887
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEE-------eccCCCeEE
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRI-------LAHTSDVNT 274 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~ 274 (491)
...... +...+.+++|+| ++++|++|+.|+.|++||+.+++.+..+ .+|...|.+
T Consensus 199 ~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 199 CSLTLS-----------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp EEEEEE-----------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred eEEEEE-----------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 543322 222689999999 8999999999999999999998877666 578999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccC--------CCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNV--------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
++|+ +++++|++|+.|+.|++||++.... .......+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 262 v~~~-~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 262 VVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp EEEC-TTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 9998 7899999999999999999973221 123455677899999999999999999999999999999998
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecC--cccCCCcEEEEEecCCeEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP--VYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~l~~g~~dg~i~i 424 (491)
+ +..+..+.+|.... ..+.+++ .++|++++|++|+.||.|++
T Consensus 341 ~----------------------------------~~~~~~l~~h~~~v--~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 341 S----------------------------------GNPLLMLQGHRNSV--ISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp T----------------------------------CCEEEEEECCSSCE--EEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred C----------------------------------CeEEEEECCCCCCE--EEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 7 35677778887433 3334443 57789999999999999999
Q ss_pred EECCC
Q 011216 425 YDLVS 429 (491)
Q Consensus 425 wd~~~ 429 (491)
|++..
T Consensus 385 W~~~~ 389 (393)
T 1erj_A 385 WKYKK 389 (393)
T ss_dssp EEEEE
T ss_pred Ccccc
Confidence 99754
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.8e-38 Score=288.53 Aligned_cols=213 Identities=20% Similarity=0.158 Sum_probs=168.7
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC--CCceEEEEecCCeEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~dg~i~iw 196 (491)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ......+|...|.+++|+| ++++|++++.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 45789999999999999999999999999999999877432 2234467888999999986 48999999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEEecCCeEEEEECCCCee---eEEEeccCCC
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKL---SLRILAHTSD 271 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~ 271 (491)
|+.++........ .+|...|.+++|+|+ +.+|++|+.|+.|++||+..+.. ...+.+|...
T Consensus 87 d~~~~~~~~~~~~--------------~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 87 REENGTWEKSHEH--------------AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CCSSSCCCEEEEE--------------CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred ECCCCcceEEEEc--------------cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 9987643222111 246778999999997 78999999999999999987632 3445689999
Q ss_pred eEEEEEecCC----------------CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCC----CEE
Q 011216 272 VNTVCFGDES----------------GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----RYL 331 (491)
Q Consensus 272 v~~i~~~~~~----------------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~----~~l 331 (491)
|.+++|+|.. +++|++|+.|+.|++||++... ....+..+.+|...|.+++|+|++ ++|
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 9999998431 4689999999999999986110 114566788999999999999986 788
Q ss_pred EEeeCCCcEEEeeCCC
Q 011216 332 ISNGKDQAIKLWDIRK 347 (491)
Q Consensus 332 ~~~~~dg~i~iwd~~~ 347 (491)
++++.|++|++||+..
T Consensus 232 as~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EEEETTCEEEEEECSS
T ss_pred EEEcCCCeEEEEEccC
Confidence 8888999999998765
No 66
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.1e-36 Score=281.83 Aligned_cols=248 Identities=21% Similarity=0.292 Sum_probs=212.3
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~ 244 (491)
..+|...|++++|+|++++|++++.|++|++||..+++...... .|...|.+++|+|++.+|++
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~----------------~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT----------------MPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CSSSCCCEEEECTTSSEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe----------------cCCCCEEEEEECCCCCEEEE
Confidence 45788899999999999999999999999999998776543322 23447999999999999999
Q ss_pred EecCCeEEEEECCCC------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc
Q 011216 245 GSSDDCIYVYDLEAN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
|+.|+.+++|++... .....+..|...|.+++|+ +++..|++++.|++|++||++ .++.+..+.+|...
T Consensus 124 g~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~----~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVE----SGQLLQSFHGHGAD 198 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSC
T ss_pred eeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCC----CCeEEEEEcCCCCC
Confidence 999999999998643 2345677899999999998 788899999999999999998 77888899999999
Q ss_pred EEEEEEcC--CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee
Q 011216 319 ITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 319 i~~i~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
|.+++|+| ++++|++++.|+.|++||+++ +..+..+.+|....
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~----------------------------------~~~~~~~~~h~~~v- 243 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRS----------------------------------GQCVQAFETHESDV- 243 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTT----------------------------------CCEEEEECCCSSCE-
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCC----------------------------------CcEEEEecCCCCCe-
Confidence 99999987 578999999999999999987 35566777776322
Q ss_pred eEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC--CCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+.+|+|++.+|++|+.|+.|++||+.+++.+..+..+ ...+.+++|+|++++|++++.||.|++||+..+.
T Consensus 244 -----~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 244 -----NSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp -----EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred -----EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 23367779999999999999999999998887776543 3578999999999999999999999999997764
No 67
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-37 Score=294.85 Aligned_cols=251 Identities=19% Similarity=0.321 Sum_probs=211.7
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
...+|.+.|++++|+|++++|++|+.|++|+|||+.+++...... +|...|.+++|+|++++|+
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~----------------~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK----------------LHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE----------------CCCTTCCCCEECTTSSEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe----------------cCCCCEEEEEECCCCCEEE
Confidence 346888899999999999999999999999999998876544332 3555899999999999999
Q ss_pred EEecCCeEEEEECCCCe-------eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee----
Q 011216 244 AGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---- 312 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---- 312 (491)
+|+.|+.|++||+.+.. ....+.+|.+.|.++.|+|.++..|++|+.|++|++||++ .+..+..+
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~~~ 200 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT----TGQRISIFGSEF 200 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT----TCCEEEEECCCS
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC----CCcEEEEeeccc
Confidence 99999999999997532 3345679999999999997677889999999999999998 66666555
Q ss_pred -ccccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc
Q 011216 313 -MGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 313 -~~~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
.+|...|.+++|+| ++.+|++|+.|+.|++||++.. ...+..+.+
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~---------------------------------~~~~~~~~~ 247 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---------------------------------SRAVRTYHG 247 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT---------------------------------CCCCEEECC
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC---------------------------------CcceEEECC
Confidence 67899999999987 8899999999999999999752 245566777
Q ss_pred cceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC-------CCeeeeEecCCCCeEEEEECCCc
Q 011216 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGD 463 (491)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-------~~v~~~~~s~~~~~l~s~~~Dg~ 463 (491)
|.... .+.+|+|++++|++|+.||.|++||+.+++.+..+..+. ..|++++|+|+|++|++|+.||.
T Consensus 248 h~~~v------~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~ 321 (380)
T 3iz6_a 248 HEGDI------NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD 321 (380)
T ss_dssp CSSCC------CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC
T ss_pred cCCCe------EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC
Confidence 76332 233677899999999999999999999999988876543 24899999999999999999999
Q ss_pred EEEecCCCCC
Q 011216 464 VVRWEFPGNG 473 (491)
Q Consensus 464 i~iw~~~~~~ 473 (491)
|++||+..+.
T Consensus 322 i~vwd~~~~~ 331 (380)
T 3iz6_a 322 CYVWDTLLAE 331 (380)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 9999987654
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1e-35 Score=287.91 Aligned_cols=282 Identities=20% Similarity=0.359 Sum_probs=239.4
Q ss_pred CCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 116 ~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
....+.+|.+.|.. +++++|++|++|+.||.|++||+.++..+.. ..+|...|.+++|+ +++|++++.||.|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 34678899987643 3555789999999999999999999865543 45788899999997 679999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
||+.+++...... +|...|.++.|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus 184 wd~~~~~~~~~~~----------------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 184 WNAETGECIHTLY----------------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EETTTTEEEEEEC----------------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred EECCcCcEEEEEC----------------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEE
Confidence 9999886543322 466689999996 5689999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 355 (491)
+| +++++++|+.||.|++||++ ....+..+.+|...|.+++| ++.++++++.|+.|++||+++
T Consensus 246 ~~---~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------- 308 (445)
T 2ovr_B 246 QY---DGRRVVSGAYDFMVKVWDPE----TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------- 308 (445)
T ss_dssp EE---CSSCEEEEETTSCEEEEEGG----GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------
T ss_pred EE---CCCEEEEEcCCCEEEEEECC----CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------
Confidence 99 46789999999999999998 77888889999999999999 788999999999999999987
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 435 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 435 (491)
...+..+.+|...... ++++++++++|+.||.|++||+.+++.+..
T Consensus 309 --------------------------~~~~~~~~~~~~~v~~--------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 309 --------------------------GNCIHTLTGHQSLTSG--------MELKDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp --------------------------CCEEEEECCCCSCEEE--------EEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --------------------------CCEEEEEcCCcccEEE--------EEEeCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3456666666532222 122578999999999999999999999999
Q ss_pred ecC---CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 436 LKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 436 ~~~---h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+.. |...|++++|+ +++|++++.||.|++||+.++..
T Consensus 355 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 355 LQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp ECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred EccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence 886 88899999995 57999999999999999988754
No 69
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=7e-37 Score=332.97 Aligned_cols=358 Identities=18% Similarity=0.203 Sum_probs=272.1
Q ss_pred cccCCCCCccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE
Q 011216 110 RYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~--dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 187 (491)
+.-.......+.+|...|.+++|+| ++.++++|+.||.|++||+.++..... ..+|...|.+++|+|++++|+++
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT---MFGHTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE---ECCCSSCEEEEEECSSTTEEEEE
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe---ecCCCCCEEEEEEecCCCEEEEE
Confidence 3333444456789999999999999 556899999999999999999865544 35778899999999999999999
Q ss_pred ecCCeEEEEECCCCccccccceecc--------------ccccccccC-------------------------CCCCcee
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEI--------------HDGLDFSAA-------------------------DDGGYSF 228 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~~-------------------------~~~~h~~ 228 (491)
+.||.|++||+.+++.......... ...+.+... ...+|..
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 841 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS 841 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC
Confidence 9999999999987754433221110 000111110 0126778
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc-----
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----- 303 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~----- 303 (491)
.|.+++|+|+++++++++.+|.|++||+.++..+..+.+|...|.+++|+ +++++|++++.||.|++||+....
T Consensus 842 ~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC-CCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 89999999999999999999999999999999999999999999999998 788999999999999999854210
Q ss_pred ----------------------------------------------------------------------CCCcceeeec
Q 011216 304 ----------------------------------------------------------------------VKGKPAGVLM 313 (491)
Q Consensus 304 ----------------------------------------------------------------------~~~~~~~~~~ 313 (491)
..+.....+.
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 0123344556
Q ss_pred cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce
Q 011216 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
+|...|++++|+|++++|++++.||.|++||+.+...... ......+..+.+.++...+....+..+..+.....
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL-----QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC-----BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE-----ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC
Confidence 7889999999999999999999999999999987543321 11222233344444444443333444444432211
Q ss_pred e-----eeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 394 L-----RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 394 ~-----~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
. ........+.+|+|+++++++++.||.|++||+.+++++..+.+|.+.|++++|+|++++|++++.||.|++||
T Consensus 1076 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 0 00001224457888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 011216 469 FPGNGEAA 476 (491)
Q Consensus 469 ~~~~~~~~ 476 (491)
+.++....
T Consensus 1156 ~~~~~~~~ 1163 (1249)
T 3sfz_A 1156 VSDGQLLH 1163 (1249)
T ss_dssp SSSSCCCC
T ss_pred CCCCceEE
Confidence 99876543
No 70
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=281.13 Aligned_cols=255 Identities=20% Similarity=0.243 Sum_probs=201.2
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
...+|...|.+++|+|+ +|++++.|++|++||+.++.......+ ...+|...|.+++|+|++++|+
T Consensus 9 ~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~------------~~~~h~~~v~~v~~sp~~~~la 74 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVL------------DETAHKKAIRSVAWRPHTSLLA 74 (330)
T ss_dssp EEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEE------------CTTCCCSCEEEEEECTTSSEEE
T ss_pred eeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEE------------ecCCccCCEEEEEECCCCCEEE
Confidence 34578889999999988 999999999999999987532111111 0123777999999999999999
Q ss_pred EEecCCeEEEEECCC-------CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc
Q 011216 244 AGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
+|+.|+.|++||+.. .+.+..+.+|...|.+++|+ +++++|++|+.|++|++||++........+..+.+|.
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~ 153 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS 153 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence 999999999999853 34566788999999999998 7899999999999999999953222345667788999
Q ss_pred ccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee
Q 011216 317 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
..|.+++|+|++.+|++++.|+.|++||+.... ...+..+.+|....
T Consensus 154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~--------------------------------~~~~~~~~~h~~~v- 200 (330)
T 2hes_X 154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD--------------------------------WECVAVLNGHEGTV- 200 (330)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--------------------------------EEEEEEECCCSSCE-
T ss_pred CceEEEEECCCCCEEEEEcCCCeEEEEECCCCC--------------------------------eeEEEEccCCCCcE-
Confidence 999999999999999999999999999986521 13566677776322
Q ss_pred eEEEEecCcccCC--CcEEEEEecCCeEEEEECCCc--------cEEEEecC-CCCCeeeeEecCCCCeEEEEECCCcEE
Q 011216 397 LIRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSG--------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 397 ~~~~~~~~~~s~~--~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~Dg~i~ 465 (491)
++.+|+|+ +.+|++|+.|+.|++||+..+ .....+.. |...|.+++|++++ +|++++.||.|+
T Consensus 201 -----~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~ 274 (330)
T 2hes_X 201 -----WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLA 274 (330)
T ss_dssp -----EEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEE
T ss_pred -----EEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEE
Confidence 23356667 679999999999999998765 34555554 89999999999765 899999999999
Q ss_pred EecCCCC
Q 011216 466 RWEFPGN 472 (491)
Q Consensus 466 iw~~~~~ 472 (491)
+|+...+
T Consensus 275 iw~~~~~ 281 (330)
T 2hes_X 275 VYEEVDG 281 (330)
T ss_dssp EEEEETT
T ss_pred EEEcCCC
Confidence 9998654
No 71
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-35 Score=286.27 Aligned_cols=287 Identities=22% Similarity=0.339 Sum_probs=241.8
Q ss_pred CCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
..+....+.+|.+.|.+++|+ +++|++|+.||.|++||+.+++.+.. ...|...|.+++|+ ++.|++++.||.
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s~s~dg~ 220 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT---LYGHTSTVRCMHLH--EKRVVSGSRDAT 220 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE---ECCCCCcEEEEEec--CCEEEEEeCCCE
Confidence 334445678999999999997 57999999999999999999865544 35677799999995 678999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
|++||+.+++...... +|...|.+++| +++++++++.||.|++||+.+++.+..+.+|...|
T Consensus 221 i~~wd~~~~~~~~~~~----------------~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 282 (445)
T 2ovr_B 221 LRVWDIETGQCLHVLM----------------GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 282 (445)
T ss_dssp EEEEESSSCCEEEEEE----------------CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred EEEEECCCCcEEEEEc----------------CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence 9999999877544322 35668999999 68899999999999999999999999999999999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
.++.| ++.++++++.|+.|++||++ .++.+..+.+|...+.++.++ +++|++++.||.|++||+++
T Consensus 283 ~~~~~---~~~~l~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~----- 348 (445)
T 2ovr_B 283 YSLQF---DGIHVVSGSLDTSIRVWDVE----TGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT----- 348 (445)
T ss_dssp EEEEE---CSSEEEEEETTSCEEEEETT----TCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-----
T ss_pred EEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-----
Confidence 99999 57899999999999999998 778888999999999988885 66999999999999999987
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce-eeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
+..+..+.++.. ...+... .+ ++++|++|+.||.|++||+.+++
T Consensus 349 -----------------------------~~~~~~~~~~~~~~~~v~~~----~~--~~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 349 -----------------------------GQCLQTLQGPNKHQSAVTCL----QF--NKNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp -----------------------------CCEEEEECSTTSCSSCEEEE----EE--CSSEEEEEETTSEEEEEETTTCC
T ss_pred -----------------------------CcEEEEEccCCCCCCCEEEE----EE--CCCEEEEEeCCCeEEEEECCCCc
Confidence 345555554221 1122222 23 46899999999999999999999
Q ss_pred EEEEe-----cCCCCCeeeeEecCCCCeEEEEECCCc----EEEecCCCCC
Q 011216 432 QVAAL-----KYHTSPVRDCSWHPSQPMLVSSSWDGD----VVRWEFPGNG 473 (491)
Q Consensus 432 ~~~~~-----~~h~~~v~~~~~s~~~~~l~s~~~Dg~----i~iw~~~~~~ 473 (491)
.+..+ ..|.+.|++++|+|++.+|++++.||+ |.+||+....
T Consensus 394 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 394 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 98888 478899999999999999999999998 9999998753
No 72
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.9e-36 Score=303.30 Aligned_cols=301 Identities=15% Similarity=0.152 Sum_probs=233.9
Q ss_pred CCCccccCCCC---ceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEE-eeccCCceeEEEeEeCCCCceEEEEec
Q 011216 115 NGPWPVDQTTS---RAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 115 ~~~~~~~~h~~---~v~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~l~~~~~ 189 (491)
.....+.+|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+... .....|...|.+++|+ ++++|++++.
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 272 (615)
T 1pgu_A 194 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA 272 (615)
T ss_dssp EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET
T ss_pred ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC
Confidence 33456678988 9999999999 999999999999999999988665543 1111677799999999 9999999999
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
|+.|++||+.+++......... ..+...+.++.|. +++++++++.+|.|++||+.+++.+..+.+|.
T Consensus 273 d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~ 339 (615)
T 1pgu_A 273 DATIRVWDVTTSKCVQKWTLDK------------QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHN 339 (615)
T ss_dssp TSEEEEEETTTTEEEEEEECCT------------TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCS
T ss_pred CCcEEEEECCCCcEEEEEcCCC------------CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCC
Confidence 9999999999887654433221 1123468888886 88899999999999999999888877777776
Q ss_pred CCeEEEEEecC--------------------------------CCCEEEEEeCCCeEEEEeCccccC-------------
Q 011216 270 SDVNTVCFGDE--------------------------------SGHLIYSGSDDNLCKVWDRRCLNV------------- 304 (491)
Q Consensus 270 ~~v~~i~~~~~--------------------------------~~~~l~s~s~dg~i~iwd~~~~~~------------- 304 (491)
..|.+++| |. ++..|++++.|+.|++||+.....
T Consensus 340 ~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~ 418 (615)
T 1pgu_A 340 KGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDG 418 (615)
T ss_dssp SCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSS
T ss_pred CCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCC
Confidence 66666555 21 144555555555555555432100
Q ss_pred ---------------------------------------------------------CCcce-eeeccccccEEEEEEcC
Q 011216 305 ---------------------------------------------------------KGKPA-GVLMGHLEGITFIDSRG 326 (491)
Q Consensus 305 ---------------------------------------------------------~~~~~-~~~~~~~~~i~~i~~sp 326 (491)
..... ..+.+|...|++++|+|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 498 (615)
T 1pgu_A 419 FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 498 (615)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECT
T ss_pred CEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECC
Confidence 11111 44567889999999999
Q ss_pred CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc-cceeeeeEEEEecCc
Q 011216 327 DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPV 405 (491)
Q Consensus 327 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 405 (491)
++++|++++.|+.|++||+.+. ..+..+.+ |... ..+.+
T Consensus 499 ~g~~l~~~~~dg~i~iw~~~~~----------------------------------~~~~~~~~~h~~~------v~~~~ 538 (615)
T 1pgu_A 499 SETYIAAGDVMGKILLYDLQSR----------------------------------EVKTSRWAFRTSK------INAIS 538 (615)
T ss_dssp TSSEEEEEETTSCEEEEETTTT----------------------------------EEEECCSCCCSSC------EEEEE
T ss_pred CCCEEEEcCCCCeEEEeeCCCC----------------------------------cceeEeecCCCCc------eeEEE
Confidence 9999999999999999999873 33444443 4321 23346
Q ss_pred ccC----------CCcEEEEEecCCeEEEEECCCc-cEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 406 YST----------GQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 406 ~s~----------~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
|+| ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+++ |++++.||.|++|++..
T Consensus 539 ~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 539 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 777 8999999999999999999998 78889999999999999999999 99999999999999875
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-36 Score=312.18 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=161.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
..|...|.+++|+| |++|++++.|++|+|||+.++..+.... |...|++++|+|++++|++|+.||.|++||+.+
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTT
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 34788999999999 8899999999999999999987665542 445799999999999999999999999999998
Q ss_pred CccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEEecc-----------
Q 011216 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH----------- 268 (491)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------- 268 (491)
++.... ....... ......+|..+|.+++|+|+ +..|++|+.||.| +||+.+++.+..+..|
T Consensus 130 ~~~~~~-~i~~~~~----~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~ 203 (902)
T 2oaj_A 130 DQLSSF-KLDNLQK----SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFS 203 (902)
T ss_dssp TEEEEE-EECCHHH----HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTC
T ss_pred Cccccc-eeccccc----cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccc
Confidence 765211 1100000 00122468889999999996 5789999999999 9999999988877655
Q ss_pred -------CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee--e---c-------------cccccEEEEE
Q 011216 269 -------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV--L---M-------------GHLEGITFID 323 (491)
Q Consensus 269 -------~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~---~-------------~~~~~i~~i~ 323 (491)
...|++++|+ +++++|++|+.||.|++||++ .++.+.. + . .|...|++++
T Consensus 204 ~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~----~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~ 278 (902)
T 2oaj_A 204 EKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDAN----SGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVY 278 (902)
T ss_dssp CCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETT----TCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEE
T ss_pred cccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECC----CCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEE
Confidence 5789999998 789999999999999999997 4444432 1 1 1345799999
Q ss_pred Ec----CCC-CEEEEeeCC-----CcEEEeeC
Q 011216 324 SR----GDG-RYLISNGKD-----QAIKLWDI 345 (491)
Q Consensus 324 ~s----p~~-~~l~~~~~d-----g~i~iwd~ 345 (491)
|+ |++ .+|++|+.| +.+.+|++
T Consensus 279 w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 279 WMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 95 443 456666555 26777774
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.9e-35 Score=286.47 Aligned_cols=303 Identities=17% Similarity=0.271 Sum_probs=236.1
Q ss_pred cccCCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeC--CCCceEEEE
Q 011216 110 RYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYA 187 (491)
Q Consensus 110 ~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~s--p~~~~l~~~ 187 (491)
+....+....+.+|.+.|.+++|+|++ +|++|+.||+|++||+.++..+.. ..+|...|.+++|+ +++++|+++
T Consensus 148 d~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~~~l~s~ 223 (464)
T 3v7d_B 148 DSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHV---FEGHNSTVRCLDIVEYKNIKYIVTG 223 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEEEESSSCEEEEEE
T ss_pred ECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEE---ECCCCCccEEEEEecCCCCCEEEEE
Confidence 333344455678999999999999998 999999999999999999865543 35678899999998 578999999
Q ss_pred ecCCeEEEEECCCCccccccceecccc-------ccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHD-------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~ 260 (491)
+.|+.|++||+.++............. ...+......+|...+.++ +++++++++++.||.|++||+.+++
T Consensus 224 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~ 301 (464)
T 3v7d_B 224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK 301 (464)
T ss_dssp ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE
T ss_pred cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc
Confidence 999999999998776433221110000 0000011223566778776 5678899999999999999999999
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcE
Q 011216 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 340 (491)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i 340 (491)
.+..+.+|...|.+++|+ ++++++++|+.||.|++||++ .++.+..+.+|...|.+++|+ +++|++++.||.|
T Consensus 302 ~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd~~----~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v 374 (464)
T 3v7d_B 302 CLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWDLE----NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSI 374 (464)
T ss_dssp EEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred EEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECC----CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcE
Confidence 999999999999999998 788999999999999999998 788899999999999999997 5799999999999
Q ss_pred EEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCC
Q 011216 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 420 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 420 (491)
++||+++.. ...... +.... ....+++++++|++|+ ||
T Consensus 375 ~vwd~~~~~----------------------------------~~~~~~-~~~~~------~~~~~~~~~~~l~~~~-dg 412 (464)
T 3v7d_B 375 RGWDANDYS----------------------------------RKFSYH-HTNLS------AITTFYVSDNILVSGS-EN 412 (464)
T ss_dssp EEEETTTCC----------------------------------EEEEEE-CTTCC------CEEEEEECSSEEEEEE-TT
T ss_pred EEEECCCCc----------------------------------eeeeec-CCCCc------cEEEEEeCCCEEEEec-CC
Confidence 999998732 122221 11111 1124666899999998 89
Q ss_pred eEEEEECCCccEEEE-ecCCCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 421 CVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
.|++||+.+++.+.. +..|...|.+++|+ ...++++++.||.+.+|-
T Consensus 413 ~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 413 QFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999999999999986 66889999999997 344566666777666554
No 75
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.8e-35 Score=272.91 Aligned_cols=254 Identities=19% Similarity=0.209 Sum_probs=203.4
Q ss_pred eeccCCceeEEEeEe-----CC-CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEc
Q 011216 163 ILAKSLRWTVTDTSL-----SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (491)
Q Consensus 163 ~~~~~~~~~v~~l~~-----sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s 236 (491)
....+|...|++++| ++ ++++|++|+.|++|++||+.+++........ .....+|...|.+++|+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~---------~~~l~~h~~~V~~~~~~ 85 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP---------HKALTGHNHFVSDLALS 85 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEE---------EEEECCCSSCEEEEEEC
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccc---------cchhccCCCceEEEEEC
Confidence 345688889999999 77 8999999999999999999765432111100 01123688899999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee---c
Q 011216 237 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---M 313 (491)
Q Consensus 237 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~ 313 (491)
|++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+ +++++|++++.|+.|++||+. . ...... .
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~----~-~~~~~~~~~~ 159 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNIL----G-ECKFSSAEKE 159 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESS----S-CEEEECCTTT
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEecc----C-Cceeeeeccc
Confidence 999999999999999999999999999999999999999998 789999999999999999985 2 222222 3
Q ss_pred cccccEEEEEEcCCC----------CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCC
Q 011216 314 GHLEGITFIDSRGDG----------RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
+|...|.+++|+|++ .+|++++.|+.|++||... .
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------------------------------~ 204 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----------------------------------Q 204 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----------------------------------E
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----------------------------------c
Confidence 788899999999987 7899999999999999543 4
Q ss_pred eeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC-ccEEEEecCCCCCeeeeEecCCCCeEEEEECCC
Q 011216 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg 462 (491)
....+.+|... ..+.+|+|++++|++|+.||.|++||+.. ......+. +...|.+++|+|++++|+++ .|+
T Consensus 205 ~~~~~~~h~~~------v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~ 276 (343)
T 2xzm_R 205 IRYTFKAHESN------VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQ 276 (343)
T ss_dssp EEEEEECCSSC------EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESS
T ss_pred eeEEEcCcccc------ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCC
Confidence 45566666532 23346788999999999999999999944 44444443 55679999999999877655 588
Q ss_pred cEEEecCCCCCC
Q 011216 463 DVVRWEFPGNGE 474 (491)
Q Consensus 463 ~i~iw~~~~~~~ 474 (491)
.|++|++.+...
T Consensus 277 ~v~iw~~~~~~~ 288 (343)
T 2xzm_R 277 GVKIFNLMTQSK 288 (343)
T ss_dssp CEEEEESSSCCS
T ss_pred CEEEEEeCCCCC
Confidence 899999987654
No 76
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=277.79 Aligned_cols=263 Identities=17% Similarity=0.145 Sum_probs=209.0
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC--CceEEEEecCCeEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVH 194 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~~~dg~i~ 194 (491)
...+.+|.+.|++++|+|++++||+|+.||.|+||++..+.. ........|...|++++|+|+ +++|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 456789999999999999999999999999999999985422 223345678889999999987 89999999999999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEEecCCeEEEEECCCCe--eeEEEeccCC
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTS 270 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~ 270 (491)
+||+.+++....... .+|...|.+++|+|+ +++|++++.|+.|++||+.++. ....+..|..
T Consensus 83 iwd~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 148 (379)
T 3jrp_A 83 IWKEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 148 (379)
T ss_dssp EEEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTT
T ss_pred EEEcCCCceeEeeee--------------cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCC
Confidence 999988763222221 135668999999999 9999999999999999998874 3445668999
Q ss_pred CeEEEEEecC------------CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC---CCEEEEee
Q 011216 271 DVNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNG 335 (491)
Q Consensus 271 ~v~~i~~~~~------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~~~~ 335 (491)
.|.+++|+|. ++.+|++++.|+.|++||++...........+.+|...|.+++|+|+ +++|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 9999999853 68999999999999999997433223455678889999999999999 89999999
Q ss_pred CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.||.|++||++...... ....+....... ...+++|+|++++|++
T Consensus 229 ~dg~i~iwd~~~~~~~~-------------------------------~~~~~~~~~~~~----~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPW-------------------------------KKTLLKEEKFPD----VLWRASWSLSGNVLAL 273 (379)
T ss_dssp TTSCEEEEEESSTTSCC-------------------------------EEEESSSSCCSS----CEEEEEECSSSCCEEE
T ss_pred CCCEEEEEeCCCCCccc-------------------------------eeeeeccccCCC----cEEEEEEcCCCCEEEE
Confidence 99999999998743211 111111111111 1234467889999999
Q ss_pred EecCCeEEEEECCC
Q 011216 416 GSHDSCVYVYDLVS 429 (491)
Q Consensus 416 g~~dg~i~iwd~~~ 429 (491)
++.||.|++||+..
T Consensus 274 ~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 274 SGGDNKVTLWKENL 287 (379)
T ss_dssp EESSSSEEEEEEEE
T ss_pred ecCCCcEEEEeCCC
Confidence 99999999999874
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.1e-36 Score=310.54 Aligned_cols=214 Identities=17% Similarity=0.266 Sum_probs=185.7
Q ss_pred CCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 115 ~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
.....+.+|.++|.+++|+|+|++|++|+.||.|++||+.++..+... ..|...|.+++|+|++++|++++.||.|+
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 334567789999999999999999999999999999999998665543 56777899999999999999999999999
Q ss_pred EEECCCCcc-ccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEeccC-CC
Q 011216 195 IVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHT-SD 271 (491)
Q Consensus 195 iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~ 271 (491)
+||+.++.. .... .+|...|.+++|+| +++.|++++.||.|++||+.++.....+..+. ..
T Consensus 123 vw~~~~~~~~~~~~----------------~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 123 LWNWENNWALEQTF----------------EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186 (814)
T ss_dssp EEEGGGTSEEEEEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC
T ss_pred EEECCCCceEEEEE----------------cCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC
Confidence 999987632 1111 13566899999999 88999999999999999999888877776555 89
Q ss_pred eEEEEEec-CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCC
Q 011216 272 VNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 272 v~~i~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 350 (491)
+.+++|+| +++.+|++++.||.|++||++ .+..+..+.+|...|.+++|+|++++|++++.||.|++||+.+...
T Consensus 187 v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp CCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 99999984 288999999999999999997 7778888899999999999999999999999999999999987554
Q ss_pred c
Q 011216 351 N 351 (491)
Q Consensus 351 ~ 351 (491)
.
T Consensus 263 ~ 263 (814)
T 3mkq_A 263 E 263 (814)
T ss_dssp E
T ss_pred E
Confidence 3
No 78
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-36 Score=289.92 Aligned_cols=281 Identities=14% Similarity=0.185 Sum_probs=222.5
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC-CCceEEEEecCCeEEEEECCC---Cccccc
Q 011216 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS---GTMESL 206 (491)
Q Consensus 131 ~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~iwd~~~---~~~~~~ 206 (491)
.|+|+++.+++++ .|+.. +..+.. ...+|...|++++|+| ++++|++|+.||+|++||+.+ +.....
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~~--~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 104 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIAT--LMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS 104 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEEE--ECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC
T ss_pred hcCCccccccccc------ccccc-ceEEee--eccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce
Confidence 4788888887765 38744 433333 2267888999999999 999999999999999999876 321110
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC---CCeeeEEEec------------cCCC
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRILA------------HTSD 271 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~ 271 (491)
.. . .+|...|.+++|+|++++|++++.||.|++||+. +++....+.. +...
T Consensus 105 ~~-~-------------~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 170 (437)
T 3gre_A 105 SL-T-------------YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170 (437)
T ss_dssp SE-E-------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred ee-e-------------ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccC
Confidence 00 0 0356689999999999999999999999999995 4544433322 4456
Q ss_pred eEEEEEe-cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc--ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 272 VNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 272 v~~i~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
+.++.+. .+++.+|++|+.|+.|++||++ ..+.+..+.+ |...|++++|+|++++|++++.||.|++||++.
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~- 245 (437)
T 3gre_A 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF- 245 (437)
T ss_dssp EEEEEEEECSSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-
T ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-
Confidence 6666632 1678899999999999999998 7788888887 899999999999999999999999999999987
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc-ccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
...+..+. .+. ..+....+++.|++++.+|++|+.||.|++||+
T Consensus 246 ---------------------------------~~~~~~~~~~~~--~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 246 ---------------------------------NVLIRSWSFGDH--APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp ---------------------------------TEEEEEEBCTTC--EEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred ---------------------------------ccEEEEEecCCC--CceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 24455554 333 355667788899999999999999999999999
Q ss_pred CCccEEEEecCC--------------------------CCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 428 VSGEQVAALKYH--------------------------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 428 ~~~~~~~~~~~h--------------------------~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
.+++.+..+.+| ...|++++|+ ++++|++++.||.|++||+..+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 291 VKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp TTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred CCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 999988777644 4457788888 6789999999999999999877543
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=280.28 Aligned_cols=311 Identities=15% Similarity=0.100 Sum_probs=224.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEeec-----------------------------------
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW---KIQKDILA----------------------------------- 165 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~----------------------------------- 165 (491)
..++.+++|+|||++|+++ .++.|++||+.+++ .+......
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977666 57799999999886 33322110
Q ss_pred ----------------cCCceeEEEeEeCCCCceE-EEEecCCeEEEEECC--CCccccccceeccccccccccCCCCCc
Q 011216 166 ----------------KSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVG--SGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 166 ----------------~~~~~~v~~l~~sp~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
..|...|.+++|+|++++| ++++.|+.|++||+. +++........ .|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~ 148 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CF 148 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------EC
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cC
Confidence 1233469999999999996 888899999999998 66654433211 13
Q ss_pred eecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE----EEeccCCCeEEEEEecCC---CCEEEEEeCCCeEEEEeC
Q 011216 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDR 299 (491)
Q Consensus 227 ~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~i~~~~~~---~~~l~s~s~dg~i~iwd~ 299 (491)
...|.+++|+|++++|++++.+|.|++|++.+++... .+.+|...|++++|+ ++ +++|++|+.|+.|++||+
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEE
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEEC
Confidence 3479999999999999999999999999998877544 677899999999999 56 889999999999999999
Q ss_pred ccccCCCcceee-eccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccccc
Q 011216 300 RCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 300 ~~~~~~~~~~~~-~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
+ .+..+.. +.+|...|.+++|+ ++++|++++.|+.|++||+++............ +..+......
T Consensus 228 ~----~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~---- 293 (450)
T 2vdu_B 228 P----QCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL-----IKPYLNDQHL---- 293 (450)
T ss_dssp S----CTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH-----HGGGCCTTSB----
T ss_pred C----CCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh-----hhhhhhhccc----
Confidence 7 6666666 56899999999999 999999999999999999988543222110000 0000000000
Q ss_pred CCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEEC--CCc---cEEEEecCCCCCeeeeEecCCC
Q 011216 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL--VSG---EQVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~--~~~---~~~~~~~~h~~~v~~~~~s~~~ 452 (491)
+ ......-........ ...+.++|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++
T Consensus 294 -~-~~~~~~~~~~~~~~~----v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 294 -A-PPRFQNENNDIIEFA----VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp -C-----------CBCCC----EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred -c-cccccccccccceEE----EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 0 000000000000011 12335677999999999 8999999999 565 677778877 889999999964
Q ss_pred CeEEEE-EC------CCcEEEecCCCC
Q 011216 453 PMLVSS-SW------DGDVVRWEFPGN 472 (491)
Q Consensus 453 ~~l~s~-~~------Dg~i~iw~~~~~ 472 (491)
++++. +. +..|.+|.+...
T Consensus 367 -~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 367 -FQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp -EEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred -EEEEEecccCCCCCCcceEEEEEEcC
Confidence 44444 32 556899987654
No 80
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=294.51 Aligned_cols=270 Identities=12% Similarity=0.036 Sum_probs=200.3
Q ss_pred CCCCceEEEEEcCCC---------CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 122 QTTSRAYVSQFSADG---------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg---------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
.+.+.|++++|+|++ ++||+|+.++.. -..+|+++.+++++.|++
T Consensus 131 ~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~~laS~s~D~t 184 (524)
T 2j04_B 131 NVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLEMFDKEKHSSC 184 (524)
T ss_dssp ECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------CEE
T ss_pred ECCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------CccchhhhhhccCCCCce
Confidence 368999999999997 799999866420 013689999999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC------CCEEEEEecCCeEEEEECCCCee-----
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD------GRELVAGSSDDCIYVYDLEANKL----- 261 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~------~~~l~~~~~dg~i~vwd~~~~~~----- 261 (491)
|+||++.+++......... .+|.+.|.+++|+|+ +.+|++++.||+|++||+..+..
T Consensus 185 I~iWd~~~~~~~~~~~~~l------------~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 185 IQIFKMNTSTLHCVKVQTI------------VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp EEEEEEETTTCCEEEEEEE------------EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred EEEEEccCCCCCceEEEEE------------EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 9999998765421110000 124458999999996 57999999999999999976642
Q ss_pred ------eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE--EEcCCC-CEEE
Q 011216 262 ------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI--DSRGDG-RYLI 332 (491)
Q Consensus 262 ------~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i--~~sp~~-~~l~ 332 (491)
...+.+|...|++++|++ + ..|++|+.||+|++||++.. ..+...+.+|...|.+| +|+|++ .+|+
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred eeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 236778999999999984 3 48999999999999999721 23455678999999999 578888 8999
Q ss_pred EeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcE
Q 011216 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
+++.|++|+|||+++.. .+..+.+|..... ..+.+|+|+++.
T Consensus 328 S~S~D~tvklWD~~~~~----------------------------------~~~~~~~~~~~~~----v~~v~fsp~~~~ 369 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIA----------------------------------TTKTTVSRFRGSN----LVPVVYCPQIYS 369 (524)
T ss_dssp EEETTSEEEEECGGGHH----------------------------------HHCEEEEECSCCS----CCCEEEETTTTE
T ss_pred EeccCCeEEEEECCCCC----------------------------------cccccccccccCc----ccceEeCCCcCe
Confidence 99999999999998632 2223333321111 133467889999
Q ss_pred EEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 413 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
+++++.|+.|++||++++.++..+.+|.+.|++++|+|++++|++|+.||+|++|++...
T Consensus 370 l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 370 YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 999999999999999999988888899999999999999999999999999999998653
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1e-35 Score=284.03 Aligned_cols=293 Identities=14% Similarity=0.208 Sum_probs=228.9
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEE-EEEeeccCCceeEEEeEeCC-CCceEEEEecCCeEEEEECCCCc
Q 011216 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
....++++|+...++ +++.||.|+||++...... .......+|...|++++|+| ++++|++++.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344689999876544 5788999999999765332 12233567888999999999 89999999999999999998875
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEE--eccCCCeEEEEEec
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGD 279 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~i~~~~ 279 (491)
........ .....+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+ ..|...|.+++|+
T Consensus 116 ~~~~~~~~---------~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~- 185 (402)
T 2aq5_A 116 LVLPLREP---------VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS- 185 (402)
T ss_dssp CSSCBCSC---------SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEEC-
T ss_pred CccccCCc---------eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEEC-
Confidence 42211000 00112477799999999998 69999999999999999999999888 7899999999998
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCCCcceeee-cccccc-EEEEEEcCCCCEEEEe---eCCCcEEEeeCCCCCCcccc
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEG-ITFIDSRGDGRYLISN---GKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~-i~~i~~sp~~~~l~~~---~~dg~i~iwd~~~~~~~~~~ 354 (491)
+++++|++++.|+.|++||++ .+..+..+ ..|... +.++.|+|++++|+++ +.|+.|++||+++....
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~--- 258 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPR----KGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP--- 258 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETT----TTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC---
T ss_pred CCCCEEEEEecCCcEEEEeCC----CCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC---
Confidence 689999999999999999998 67777777 678776 8999999999999999 78999999999874321
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEc-ccceeeeeEEEEecCcccCCCcEEEE-EecCCeEEEEECCCccE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~~~~ 432 (491)
+.... .+. .. ...+.|+|++++|++ |+.||.|++||+.+++.
T Consensus 259 ------------------------------~~~~~~~~~--~~----v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 259 ------------------------------LSLQELDTS--SG----VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp ------------------------------SEEEECCCC--SS----CEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ------------------------------ceEEeccCC--Cc----eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 11111 111 11 123467779999875 55799999999998874
Q ss_pred -EEEecC--CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 433 -VAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 433 -~~~~~~--h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+..+.. |..+|.+++|+|++.++++ .|+.+++|++..+.
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred ceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 444443 5689999999999998875 57799999998653
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.2e-34 Score=278.83 Aligned_cols=262 Identities=21% Similarity=0.308 Sum_probs=206.8
Q ss_pred ccCCceeEEEeEeCCC-CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EE
Q 011216 165 AKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-EL 242 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l 242 (491)
...|.+.|++++|+|+ +.+|++++.+|.|++|++.+........ +.........+|...|.+++|+|++. +|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS------GECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTT------CCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcc------ccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 3456778999999997 6899999999999999997531110000 00000001124777899999999988 99
Q ss_pred EEEecCCeEEEEECCCCee-------eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc
Q 011216 243 VAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
++|+.||.|++||+..+.. ...+.+|...|.+++|+|.++.+|++++.||.|++||++... ....+..+..|
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~ 276 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAH 276 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECC
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecC
Confidence 9999999999999987422 355668999999999996688999999999999999998322 12566677789
Q ss_pred cccEEEEEEcCCCC-EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 316 LEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 316 ~~~i~~i~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
...|++++|+|++. +|++++.||.|++||++... ..+..+..|..
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---------------------------------~~~~~~~~h~~- 322 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK---------------------------------LKLHSFESHKD- 322 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---------------------------------SCSEEEECCSS-
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------CCeEEeecCCC-
Confidence 99999999999987 68899999999999998732 34556665542
Q ss_pred eeeEEEEecCcccCCC-cEEEEEecCCeEEEEECCC--------------ccEEEEecCCCCCeeeeEecCCCC-eEEEE
Q 011216 395 RTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVS--------------GEQVAALKYHTSPVRDCSWHPSQP-MLVSS 458 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~ 458 (491)
.+ .++.|+|++ .+|++++.||.|++||+.. .+.+..+.+|...|++++|+|+++ +|+++
T Consensus 323 -~v----~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 397 (430)
T 2xyi_A 323 -EI----FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397 (430)
T ss_dssp -CE----EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEE
T ss_pred -CE----EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEE
Confidence 22 333566777 4799999999999999977 367788889999999999999999 89999
Q ss_pred ECCCcEEEecCCCC
Q 011216 459 SWDGDVVRWEFPGN 472 (491)
Q Consensus 459 ~~Dg~i~iw~~~~~ 472 (491)
+.||.|++|++...
T Consensus 398 s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 398 SEDNIMQVWQMAEN 411 (430)
T ss_dssp ETTSEEEEEEECHH
T ss_pred ECCCCEEEeEcccc
Confidence 99999999999753
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=280.51 Aligned_cols=269 Identities=10% Similarity=-0.018 Sum_probs=205.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
.....|.+++|||||+++|+++.|++|+ |...+. ...+|...|.+++|+|+| .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE-------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC-------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC-------CcceEEEEeC---
Confidence 3468899999999999999999999999 654442 225889999999999999 3455444443
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC-----CeEEEE
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-----DVNTVC 276 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~i~ 276 (491)
+....... +|...|.+++|+|+|++|++++.||.|++||... .+..+. |.. .|.+++
T Consensus 75 ~~~~~~~~---------------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 75 QQNGLLNS---------------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CSSCSSTT---------------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred CCceEeec---------------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence 32222221 1234799999999999999999999999999644 555555 665 499999
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCc---ceeee----ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~----~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
|+ |++++|++|+.||+|++||+........ .+..+ .+|...|.+++|+|+| +++++.|+.|++||+....
T Consensus 137 fS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 137 WN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred Ec-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 98 8999999999999999999973211000 24555 6788899999999999 8889999999999997733
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc-ccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
.. ....++. +|.. .+ .+.+|+ +++||+++ ++.|++||+.
T Consensus 214 ~~-------------------------------~~~~tL~~~h~~--~V----~svaFs--g~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 214 HQ-------------------------------PVSRMIQNASRR--KI----TDLKIV--DYKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp SC-------------------------------CCEEEEECCCSS--CC----CCEEEE--TTEEEEEC-SSEEEEEETT
T ss_pred cc-------------------------------cceeeecccccC--cE----EEEEEE--CCEEEEEe-CCeEEEEECC
Confidence 10 1223342 4431 22 233455 57899887 6999999998
Q ss_pred CccEEEEecCCCCCeeeeEe--cCCCCeEEEEECCCcEEEecCC
Q 011216 429 SGEQVAALKYHTSPVRDCSW--HPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
+++......+|.+.|.+++| +|++..|++++.||+ ++|.+.
T Consensus 254 ~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 254 NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 88774444479999999999 999999999999999 999975
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=271.78 Aligned_cols=255 Identities=18% Similarity=0.255 Sum_probs=207.5
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRE 241 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~ 241 (491)
...+|...|++++|+|++++|++++.||.|++||+..+.......+ .+|...|.+++|+++ +++
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~~~ 71 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL--------------TGHEGPVWRVDWAHPKFGTI 71 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe--------------cCCCCcEEEEEeCCCCCCCE
Confidence 3467888999999999999999999999999999974433222111 247779999999987 899
Q ss_pred EEEEecCCeEEEEECCCCe--eeEEEeccCCCeEEEEEecCC--CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc
Q 011216 242 LVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 242 l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~i~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
|++++.||.|++||+.+++ ....+..|...|.+++|+ ++ +++|++++.|+.|++||++... ......+..|..
T Consensus 72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~ 148 (379)
T 3jrp_A 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENG--TTSPIIIDAHAI 148 (379)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTS--CCCEEEEECCTT
T ss_pred EEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCC--ceeeEEecCCCC
Confidence 9999999999999999987 667777899999999998 66 8999999999999999997321 234446678999
Q ss_pred cEEEEEEcC-------------CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCe
Q 011216 318 GITFIDSRG-------------DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 384 (491)
Q Consensus 318 ~i~~i~~sp-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
.|.+++|+| ++.+|++++.|+.|++||++...... ..
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------------~~ 198 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------------------------------VL 198 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE------------------------------EE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce------------------------------ee
Confidence 999999999 69999999999999999998633211 23
Q ss_pred eEEEcccceeeeeEEEEecCcccCC---CcEEEEEecCCeEEEEECCCcc---EEEEe--cCCCCCeeeeEecCCCCeEE
Q 011216 385 VATYKGHSVLRTLIRCHFSPVYSTG---QKYIYTGSHDSCVYVYDLVSGE---QVAAL--KYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~~g~~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~~~~s~~~~~l~ 456 (491)
...+.+|... ..+++|+|+ +++|++++.||.|++||+.++. ....+ ..|...|++++|+|++++|+
T Consensus 199 ~~~~~~h~~~------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 199 ESTLEGHSDW------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp EEEECCCSSC------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred EEEEecccCc------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence 3455555522 233467778 8999999999999999998864 22222 34889999999999999999
Q ss_pred EEECCCcEEEecCCC
Q 011216 457 SSSWDGDVVRWEFPG 471 (491)
Q Consensus 457 s~~~Dg~i~iw~~~~ 471 (491)
+++.||.|++|++..
T Consensus 273 ~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 273 LSGGDNKVTLWKENL 287 (379)
T ss_dssp EEESSSSEEEEEEEE
T ss_pred EecCCCcEEEEeCCC
Confidence 999999999999974
No 85
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.9e-34 Score=266.51 Aligned_cols=287 Identities=14% Similarity=0.129 Sum_probs=211.4
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceE-EEEecCCeEEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVD 197 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~~~~~dg~i~iwd 197 (491)
....|.+.|++++|+|||++||+|+.++ ++||++.++....... .+ .+..+++.++++.+ ++++.|++|++||
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE---MR--HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE---CS--CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee---cC--CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 4578999999999999999999998775 7899998764443321 11 47778888888877 4567789999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEeccCCCeEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~i~ 276 (491)
+.+++...... |...|.+++|+++. ++++ .++.|++||+.++ +.+..+.. ....++
T Consensus 88 ~~~~~~~~~~~-----------------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 88 DVKKQDVSRIK-----------------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp TTTTEEEEEEE-----------------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred CCCCcEEEEEE-----------------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 99887654332 22379999998764 4444 4789999999988 66655544 445566
Q ss_pred EecCCCCEEEE--EeCCCeEEEEeCccccC-----------CCcc-eeeeccccccEEEEEEcCCCCEEEEeeCCCc-EE
Q 011216 277 FGDESGHLIYS--GSDDNLCKVWDRRCLNV-----------KGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IK 341 (491)
Q Consensus 277 ~~~~~~~~l~s--~s~dg~i~iwd~~~~~~-----------~~~~-~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~-i~ 341 (491)
+++ .+++. |+.||.|++||++.... ...+ +..+.+|...|++++|+|++++|++++.|++ |+
T Consensus 145 ~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 145 FSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 763 55655 68999999999973210 0012 6788999999999999999999999999998 99
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc-c-cceeeeeEEEEecCcccCCCcEEEEEecC
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-G-HSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
+||+++ +..+..+. + |.. . +.+++|+|++++|++++.|
T Consensus 222 iwd~~~----------------------------------~~~~~~~~~g~h~~--~----v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 222 VFKTED----------------------------------GVLVREFRRGLDRA--D----VVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp EEETTT----------------------------------CCEEEEEECTTCCS--C----EEEEEECTTSCEEEEEETT
T ss_pred EEECCC----------------------------------CcEEEEEEcCCCCC--c----EEEEEECCCCCEEEEEECC
Confidence 999987 35566666 3 542 2 2344678899999999999
Q ss_pred CeEEEEECCCccE--EEEec---------------------CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCCC
Q 011216 420 SCVYVYDLVSGEQ--VAALK---------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAA 476 (491)
Q Consensus 420 g~i~iwd~~~~~~--~~~~~---------------------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~~ 476 (491)
+.|++||+..+.. ...+. .+..+...++|+++++.|++++.||.+++|++..+++..
T Consensus 262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence 9999999976531 11111 112234779999999999999999999999998776554
Q ss_pred C
Q 011216 477 P 477 (491)
Q Consensus 477 ~ 477 (491)
.
T Consensus 342 ~ 342 (355)
T 3vu4_A 342 R 342 (355)
T ss_dssp E
T ss_pred e
Confidence 3
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-35 Score=279.47 Aligned_cols=264 Identities=14% Similarity=0.131 Sum_probs=196.9
Q ss_pred CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
+...|++++|+|++++|++++.|+.|++||+.++....... ..+|...|.+++|+|++++|++++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~--------------~~~h~~~v~~~~~s~~~~~l~s~s~ 75 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART--------------FSDHDKIVTCVDWAPKSNRIVTCSQ 75 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC--------------BCCCSSCEEEEEECTTTCCEEEEET
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE--------------EecCCceEEEEEEeCCCCEEEEEeC
Confidence 34479999999999999999999999999998763211111 1247779999999999999999999
Q ss_pred CCeEEEEECCCCe---eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc-ccccEEEEE
Q 011216 248 DDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFID 323 (491)
Q Consensus 248 dg~i~vwd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~i~~i~ 323 (491)
|+.|++||+.+++ ....+..|...|.+++|+ +++++|++++.|+.|++||++... .......+.. |...|.+++
T Consensus 76 d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 76 DRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQEN-DWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp TSSEEEC------CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEE
T ss_pred CCeEEEEEcCCCCceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcc-cceeeeEeecccCCCeEEEE
Confidence 9999999999887 566777899999999998 788999999999999999997221 1114566777 999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEec
Q 011216 324 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 324 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
|+|++++|++++.|+.|++||++........... .| ....+....+..+ +|... ..+
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~-~~~~~------v~~ 210 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS----VW------------GSRLPFNTVCAEY-PSGGW------VHA 210 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC----SS------------CSCCCEEEEEECC-CCSSS------EEE
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc----cc------------ccccchhhhhhcc-cCCce------EEE
Confidence 9999999999999999999999754321111000 00 0000011233333 34321 233
Q ss_pred CcccCCCcEEEEEecCCeEEEEECCCccE----EEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 404 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
++|+|++++|++++.||.|++||+.+++. +..+.+|..+|.+++|+|++++|++++.|+.+ +|+...
T Consensus 211 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 211 VGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 46788999999999999999999999887 77888999999999999999999998766655 676653
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.5e-34 Score=268.15 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=210.4
Q ss_pred CCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe
Q 011216 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 167 ~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~ 246 (491)
.|..+|.+++|+|++++|++++.|+.|++||+.+++......+. +|...|.+++|+|++++|++++
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~~~~ 71 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK--------------EHNGQVTGVDWAPDSNRIVTCG 71 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE--------------CCSSCEEEEEEETTTTEEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec--------------CCCCcccEEEEeCCCCEEEEEc
Confidence 46678999999999999999999999999999887522221111 3666899999999999999999
Q ss_pred cCCeEEEEECCCCeeeEE--EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEE
Q 011216 247 SDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 324 (491)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~ 324 (491)
.||.|++||+.+++.... +..|...|.+++|+ +++++|++++.|+.|++||++..............|...|.+++|
T Consensus 72 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 72 TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 999999999988875444 35789999999998 788999999999999999997221100123334678899999999
Q ss_pred cCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecC
Q 011216 325 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 325 sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
+|++++|++++.|+.|++||++.......... .......+....+..+.+|... ..++
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~------v~~~ 208 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP----------------TPWGSKMPFGELMFESSSSCGW------VHGV 208 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCC----------------BTTBSCCCTTCEEEECCCCSSC------EEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccc----------------cccccccchhhheEecCCCCCe------EEEE
Confidence 99999999999999999999875332111000 0000011224556666655532 2234
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 405 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 405 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
.|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++.+|+++ .||.|++|++..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 677799999999999999999999999999999999999999999999988877 999999999987
No 88
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.1e-33 Score=284.66 Aligned_cols=252 Identities=20% Similarity=0.277 Sum_probs=208.0
Q ss_pred eccCCceeEEEeEeCCCC-ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 164 LAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
...+|...|++++|+|++ ++|++|+.|++|++|++.+.......... ...+|...|.+++|+|++++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~-----------~~~~h~~~v~~v~~s~~g~~l 445 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR-----------RLTGHSHFVEDVVLSSDGQFA 445 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEE-----------EEECCSSCEEEEEECTTSSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccc-----------eecCCCCcEEEEEECCCCCEE
Confidence 346888999999999875 78999999999999999765432111100 112578899999999999999
Q ss_pred EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee---eeccccccE
Q 011216 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG---VLMGHLEGI 319 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~i 319 (491)
++|+.||.|++||+.+++....+.+|...|.+++|+ +++++|++|+.|++|++||.. ...... ...+|...|
T Consensus 446 ~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~----~~~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTL----GECKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTT----SCEEEEECSSTTSCSSCE
T ss_pred EEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECC----CCcceeeccCCCCCCCcE
Confidence 999999999999999999999999999999999998 788999999999999999985 222211 224688899
Q ss_pred EEEEEcCCC--CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeee
Q 011216 320 TFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 397 (491)
Q Consensus 320 ~~i~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (491)
.+++|+|++ ..|++++.|+.|++||+++ ......+.+|...
T Consensus 521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~----------------------------------~~~~~~~~~h~~~--- 563 (694)
T 3dm0_A 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN----------------------------------CKLRSTLAGHTGY--- 563 (694)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTT----------------------------------CCEEEEECCCSSC---
T ss_pred EEEEEeCCCCcceEEEEeCCCeEEEEECCC----------------------------------CcEEEEEcCCCCC---
Confidence 999999986 6899999999999999987 3456667777632
Q ss_pred EEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+.+++|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++ |+.|++||+.++.
T Consensus 564 ---v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 564 ---VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp ---EEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred ---EEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 23346778999999999999999999999999888874 56799999999998887765 5669999998764
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=293.16 Aligned_cols=264 Identities=19% Similarity=0.181 Sum_probs=212.0
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC--CceEEEEecCCeEEE
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHI 195 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~~~dg~i~i 195 (491)
..+.+|.+.|++++|+|+|++|++|+.||.|+|||+.++.. .......+|...|++++|+|+ +++|++++.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45689999999999999999999999999999999985422 233345678889999999998 999999999999999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--CCEEEEEecCCeEEEEECCCCe--eeEEEeccCCC
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSD 271 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~ 271 (491)
||+.+++....... .+|...|.+++|+|+ ++.+++|+.||.|++||+.++. ....+.+|...
T Consensus 82 wd~~~~~~~~~~~~--------------~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 82 WKEENGRWSQIAVH--------------AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EEEETTEEEEEEEE--------------CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EECCCCcccccccc--------------cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence 99988753222221 146679999999999 9999999999999999998873 34566789999
Q ss_pred eEEEEEecC------------CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC---CCEEEEeeC
Q 011216 272 VNTVCFGDE------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK 336 (491)
Q Consensus 272 v~~i~~~~~------------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~~~~~ 336 (491)
|.+++|+|. ++.+|++|+.||.|++||++...........+.+|...|++++|+|+ +++|++++.
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 999999853 58899999999999999998433223566778899999999999999 899999999
Q ss_pred CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEE
Q 011216 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 416 (491)
||.|++||+++.....
T Consensus 228 Dg~I~iwd~~~~~~~~---------------------------------------------------------------- 243 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPW---------------------------------------------------------------- 243 (753)
T ss_dssp SSCEEEEEESSSSSCC----------------------------------------------------------------
T ss_pred CCEEEEecCCCCCCcc----------------------------------------------------------------
Confidence 9999999987621000
Q ss_pred ecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 417 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
...+.....|...|++++|+|++++|++++.||.|++|++..+.
T Consensus 244 -------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 244 -------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp -------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred -------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 00111223577889999999999999999999999999998644
No 90
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=268.24 Aligned_cols=284 Identities=9% Similarity=0.035 Sum_probs=211.2
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccc
Q 011216 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (491)
...+.+++++|++|+.||.|++||+.++..+.... ...|.++.|+|+ +++++.|++|++|+...........
T Consensus 41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~ 112 (343)
T 3lrv_A 41 NKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK 112 (343)
T ss_dssp CSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT
T ss_pred hhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC
Confidence 34556788999999999999999999886665543 346888999998 9999999999999876432110000
Q ss_pred eeccccccccccCCCCCceecEEEEEEcC--CCCEEEEEecCCeEEEEECCCCeeeEEEe-ccCCCeEEEEEecCCCCEE
Q 011216 209 VTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l 285 (491)
..... .....+|...|.+++|+| ++++|++++.||.|++||+.+++...... .|...|.+++|+ +++.+|
T Consensus 113 ~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~l 185 (343)
T 3lrv_A 113 TNKVL------REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLL 185 (343)
T ss_dssp TCCEE------EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEE
T ss_pred Cccee------EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEE
Confidence 00000 000113556899999999 99999999999999999999998866553 456689999998 789999
Q ss_pred EEEeCCCeEEEEeCccccCCCcce-eeecc-ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccccee
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPA-GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~-~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
++|+.||.|++||++ .+... ..+.. |..+|++++|+|++.+|++++ ++.|++||+++.......
T Consensus 186 asg~~dg~i~iwd~~----~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~--------- 251 (343)
T 3lrv_A 186 ALYSPDGILDVYNLS----SPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAY--------- 251 (343)
T ss_dssp EEECTTSCEEEEESS----CTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSS---------
T ss_pred EEEcCCCEEEEEECC----CCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceee---------
Confidence 999999999999998 55655 66777 999999999999999999999 559999999985432211
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEEEEECCCccEEEEecCCCCC
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSP 442 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~ 442 (491)
..+..+...... .+.+|+|++++|++++. |+.|++|++......... .+
T Consensus 252 ----------------------~~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~ 301 (343)
T 3lrv_A 252 ----------------------PTYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DE 301 (343)
T ss_dssp ----------------------CCCBC-----CC----EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EE
T ss_pred ----------------------cccccccccccc----eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cC
Confidence 111111110000 23467889999999998 999999999766543333 56
Q ss_pred eeeeEecC---CCCeEEEEECCCcEEEecCCC
Q 011216 443 VRDCSWHP---SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 443 v~~~~~s~---~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
+..++|.+ +...|++++.||.+.++-...
T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 302 ESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ceeEecCccccccceeEEEecCCceEEEEecC
Confidence 78889998 888999999999999886443
No 91
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-33 Score=267.73 Aligned_cols=300 Identities=15% Similarity=0.156 Sum_probs=198.5
Q ss_pred eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCc-eEEEEecCCeEEEEEC----CCCcc------ccccceeccccc
Q 011216 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDV----GSGTM------ESLANVTEIHDG 215 (491)
Q Consensus 147 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~dg~i~iwd~----~~~~~------~~~~~~~~~~~~ 215 (491)
.+.+|++..... .+....|...|.+++|+|+++ +|++++.|+.|++|++ .+++. ....... ..
T Consensus 26 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~- 99 (425)
T 1r5m_A 26 IDSSDDLDGFVK---ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP--FA- 99 (425)
T ss_dssp --------CCCE---ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC--CC-
T ss_pred ccccccchhhhh---heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc--cc-
Confidence 446777766422 233345556899999999999 9999999999999999 77763 1111100 00
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEE
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 295 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~ 295 (491)
......+|...|.+++|+|++++|++++.||.|++|| .+++.+..+..|...|.+++|+ +++++|++++.|+.|+
T Consensus 100 ---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 100 ---LSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTI 174 (425)
T ss_dssp ---CC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCCEE
T ss_pred ---ccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC-CCCCEEEEEecCCeEE
Confidence 0011224677999999999999999999999999999 6777888888999999999998 7889999999999999
Q ss_pred EEeCccccCCCcceeeecccccc---------------EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccc
Q 011216 296 VWDRRCLNVKGKPAGVLMGHLEG---------------ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~---------------i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
+||++ .+..+..+..+... +.+++|+|++ .+++++.++.|++||++..........
T Consensus 175 iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~---- 245 (425)
T 1r5m_A 175 LWNVI----SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG---- 245 (425)
T ss_dssp EEETT----TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC----
T ss_pred EEECC----CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc----
Confidence 99997 44444444444443 5555555543 345555555555555555443322211
Q ss_pred ceeeceeecCCCCcccccCC-C-----------CCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 361 YEWDYRWMDYPPQARDLKHP-C-----------DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
....+..+.+.++...+... . ...+..+.+|.. ...++.|+|++ ++++++.||.|++||+.
T Consensus 246 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ------SIVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS------CEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc------cEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 01111222222222111111 1 233344444432 12334667788 99999999999999999
Q ss_pred CccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+++.+..+..|...|.+++|+|++++|++++.||.|++|++....
T Consensus 319 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999999999999999999999999998655
No 92
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-33 Score=265.90 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=202.0
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
|...|.+++|+|+|++|++|+.||.|++||+.++..+... ..|...|.+++| ++++|++++.||.|++||+....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM---AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe---cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence 8999999999999999999999999999999988655543 477789999999 56799999999999999998533
Q ss_pred c-ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCC
Q 011216 203 M-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (491)
. .... .+|...|.+++|+|++++|++++.|+.|++||+.+++....+..|...|.+++|+|.+
T Consensus 208 ~~~~~~----------------~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 208 HQIGTL----------------QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp CEEEEE----------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred ceeeEE----------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence 2 1111 1466689999999999999999999999999999999998998999999999999667
Q ss_pred CCEEEEEe--CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEE--eeCCCcEEEeeCCCCCCccccccC
Q 011216 282 GHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLG 357 (491)
Q Consensus 282 ~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~ 357 (491)
..++++++ .|+.|++||++ .+..+..+. +...|.+++|+|++++|++ |+.||.|++||+.+...
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~----~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~------- 339 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAA----TGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL------- 339 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-------
T ss_pred CCEEEEecCCCCCEEEEEECC----CCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-------
Confidence 78888876 79999999998 666776664 6678999999999999999 44899999999876321
Q ss_pred cccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEe
Q 011216 358 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 436 (491)
.....+.+|... + .+.+|+|++++|++++.||.|++||+.+++.+...
T Consensus 340 -------------------------~~~~~~~~h~~~--v----~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 340 -------------------------TKQVDIPAHDTR--V----LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp -------------------------EEEEEEECCSSC--C----CEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred -------------------------eeEEEecCCCCC--E----EEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 122234444422 2 23367779999999999999999999998877654
No 93
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-33 Score=269.45 Aligned_cols=262 Identities=14% Similarity=0.162 Sum_probs=207.8
Q ss_pred CccccCCCCceEEEEEcCC----C---CEEEEEECCCeEEEEECCCCeE-----EEEEeeccCC-----ceeEEEeEeC-
Q 011216 117 PWPVDQTTSRAYVSQFSAD----G---SLFVAGFQASQIRIYDVERGWK-----IQKDILAKSL-----RWTVTDTSLS- 178 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~d----g---~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~-----~~~v~~l~~s- 178 (491)
...+.+|...|++++|+|+ | ++|++++.||.|++|++.++.. +... ..| ...|.+++|+
T Consensus 55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL---DLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE---CCSCTTGGGSCEEEEEEEC
T ss_pred ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee---cccccccCCCcEEEEEEee
Confidence 4566789999999999999 9 9999999999999999987643 3332 344 4789999999
Q ss_pred ---CCCce-EEEEecCCeEEEEECCC------CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC
Q 011216 179 ---PDQRH-LVYASMSPIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 179 ---p~~~~-l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d 248 (491)
|++++ |++++.||.|++||+.+ ++........... ........|...|.+++|+|++ +|++++.|
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d 206 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ----GTVESPMTPSQFATSVDISERG-LIATGFNN 206 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEE----EEECCSSSSCCCCCEEEECTTS-EEEEECTT
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceee----eeeccccCCCCCceEEEECCCc-eEEEEeCC
Confidence 99999 99999999999999987 4443311100000 0000012356689999999999 99999999
Q ss_pred CeEEEEECCCCeeeEEEec---c---CCCeEEEEEecCCCCEEEEEeCC---CeEEEEeCccccCCCcceeeecc-----
Q 011216 249 DCIYVYDLEANKLSLRILA---H---TSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMG----- 314 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~~---~---~~~v~~i~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~----- 314 (491)
|.|++||+.+++.+..+.. | ...|.+++|+ +++++|++++.| +.|++||++ ..+.+..+.+
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~-~~~~~l~~~~~d~~~g~i~i~d~~----~~~~~~~~~~~~~~~ 281 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS-PQGSLLAIAHDSNSFGCITLYETE----FGERIGSLSVPTHSS 281 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC-SSTTEEEEEEEETTEEEEEEEETT----TCCEEEEECBC----
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEEC-CCCCEEEEEecCCCCceEEEEECC----CCcccceeccCcccc
Confidence 9999999999999999988 9 9999999998 789999999999 999999998 7778888888
Q ss_pred --------ccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeE
Q 011216 315 --------HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 315 --------~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
|...|.+++|+|++++|++++.|+.|++||+++. ..+.
T Consensus 282 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------------------------~~~~ 327 (397)
T 1sq9_A 282 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK----------------------------------ERIT 327 (397)
T ss_dssp ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT----------------------------------EEEE
T ss_pred cccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC----------------------------------ceeE
Confidence 9999999999999999999999999999999874 3334
Q ss_pred EEc------cc---------------ceeeeeEEEEecCcccCCC----------cEEEEEecCCeEEEEECCCcc
Q 011216 387 TYK------GH---------------SVLRTLIRCHFSPVYSTGQ----------KYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 387 ~~~------~~---------------~~~~~~~~~~~~~~~s~~~----------~~l~~g~~dg~i~iwd~~~~~ 431 (491)
.+. +| . .. +.+++|+|++ ++|++++.||.|++||+.+|+
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~----v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAE--PG----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSS--CC----EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccC--Cc----eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 444 22 2 12 2334667787 799999999999999998764
No 94
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.4e-32 Score=254.49 Aligned_cols=267 Identities=19% Similarity=0.251 Sum_probs=211.3
Q ss_pred EEEEECCCCeEEEEEeeccCCceeEEEeEeCCC-CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCc
Q 011216 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGY 226 (491)
Q Consensus 148 i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 226 (491)
+.++...+. .+.....+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+++........ ...+|
T Consensus 18 ~~~~~~~~~-~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~-----------~l~~h 85 (340)
T 4aow_A 18 LYFQSMMTE-QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR-----------ALRGH 85 (340)
T ss_dssp --------C-EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-----------EECCC
T ss_pred EEEEEccCC-ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-----------EEeCC
Confidence 344444333 23333456799999999999998 589999999999999999876543222111 11357
Q ss_pred eecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC
Q 011216 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 227 ~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
...|.+++|+|++++|++++.|+.|++|+............+...+..+.++ +++++|++++.|+.+++||+.. ..
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~---~~ 161 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLG---VC 161 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTS---CE
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCC---Cc
Confidence 7899999999999999999999999999999999888888888999999997 7888999999999999999861 22
Q ss_pred cceeeeccccccEEEEEEcCCC--CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCe
Q 011216 307 KPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 384 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~i~~sp~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
.......+|...+..++|++++ .++++++.|+.|++||+++ ...
T Consensus 162 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~----------------------------------~~~ 207 (340)
T 4aow_A 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN----------------------------------CKL 207 (340)
T ss_dssp EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT----------------------------------TEE
T ss_pred eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC----------------------------------Cce
Confidence 3344567889999999998864 5788999999999999987 355
Q ss_pred eEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcE
Q 011216 385 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i 464 (491)
+..+.+|.... .+++|+|++++|++|+.||.|++||+.+++.+..+.. ...|.+++|+|++. +++++.|+.|
T Consensus 208 ~~~~~~h~~~v------~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i 279 (340)
T 4aow_A 208 KTNHIGHTGYL------NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRY-WLCAATGPSI 279 (340)
T ss_dssp EEEECCCSSCE------EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSS-EEEEEETTEE
T ss_pred eeEecCCCCcE------EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCc-eeeccCCCEE
Confidence 66666666322 2336778999999999999999999999999988875 46799999999876 4556679999
Q ss_pred EEecCCCC
Q 011216 465 VRWEFPGN 472 (491)
Q Consensus 465 ~iw~~~~~ 472 (491)
++||+...
T Consensus 280 ~iwd~~~~ 287 (340)
T 4aow_A 280 KIWDLEGK 287 (340)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 99999765
No 95
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.6e-33 Score=267.38 Aligned_cols=263 Identities=11% Similarity=0.083 Sum_probs=183.3
Q ss_pred EeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC--------CCCEEEEEec
Q 011216 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--------DGRELVAGSS 247 (491)
Q Consensus 176 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~--------~~~~l~~~~~ 247 (491)
.+++++.+|++++.|++|+|||+.++........ ....+|.+.|.+++|+| |+++|++++.
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~-----------~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVL-----------GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE-----------CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeee-----------cccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 3445667899999999999999988765332211 12347899999999998 7899999999
Q ss_pred CCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcc-------------------
Q 011216 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP------------------- 308 (491)
Q Consensus 248 dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------------- 308 (491)
|++|+|||+.++.....+..|...|.+++|+|.+.++|++|+.|++|++||++........
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999998888888999999999999666678999999999999999733211110
Q ss_pred --eeeeccccccEEEEEEc-CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCee
Q 011216 309 --AGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 309 --~~~~~~~~~~i~~i~~s-p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.....+|...+.++.|+ |+++.|++++.|+.+++||+........... .........+.+. .
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~----~~~~~~~~~~~~~-----------~ 309 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD----STMKLGPKNLLPN-----------V 309 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSCS-----------E
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee----ecCccccEEEccc-----------c
Confidence 11124577788899986 7999999999999999999987543222110 0000001111111 1
Q ss_pred EEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEE
Q 011216 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 465 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~ 465 (491)
.....+. ......+.+ ..++.++++|+.||.|++||+.+++.+..+..|..+|++++|+|||++||+++.|| +.
T Consensus 310 ~~~~~~~---~~~~~~~~~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~ 383 (393)
T 4gq1_A 310 QGISLFP---SLLGACPHP--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VL 383 (393)
T ss_dssp EEECSSC---CSSCCEECS--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EE
T ss_pred ccccccC---cceeEEEcc--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eE
Confidence 1111111 111112222 22566788899999999999999998888888999999999999999999998777 55
Q ss_pred EecCC
Q 011216 466 RWEFP 470 (491)
Q Consensus 466 iw~~~ 470 (491)
+|.+.
T Consensus 384 lvrL~ 388 (393)
T 4gq1_A 384 LTRLM 388 (393)
T ss_dssp EEEEG
T ss_pred EEEEe
Confidence 56543
No 96
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=258.89 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=217.1
Q ss_pred CCCCCccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC--
Q 011216 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-- 190 (491)
Q Consensus 113 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-- 190 (491)
.......+.+|...|.+++|+|++++|++++.||.|++||+.++..+.... +...|.+++|+|++++|++++.+
T Consensus 63 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~ 138 (369)
T 3zwl_B 63 NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVM 138 (369)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBT
T ss_pred CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEEEecCCcc
Confidence 334456678899999999999999999999999999999999986665543 45589999999999999999998
Q ss_pred ---CeEEEEECCCCccccccceeccccccccccCCCCCcee--cEEEEEEcCCCCEEEEEecCCeEEEEECCC-CeeeEE
Q 011216 191 ---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLR 264 (491)
Q Consensus 191 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~ 264 (491)
+.|.+||+..+................+ ..|.. .+.+++|+|++++|++++.||.|++||+.+ .+....
T Consensus 139 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 213 (369)
T 3zwl_B 139 KNPGSINIYEIERDSATHELTKVSEEPIHKI-----ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS 213 (369)
T ss_dssp TBCCEEEEEEEEECTTTCCEEEECSSCSEEE-----ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE
T ss_pred CCCCEEEEEEecCCccceeecccccceeeec-----cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE
Confidence 9999999987654333222111100000 11222 799999999999999999999999999998 788888
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC------
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ------ 338 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg------ 338 (491)
+..|...|.+++|+ +++++|++++.|+.|++||++ ....+..+. +...+..++|+|+++++++++.++
T Consensus 214 ~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 287 (369)
T 3zwl_B 214 IDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVS----TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTT 287 (369)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETT----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC------
T ss_pred EecCCCceeEEEEC-CCCCEEEEecCCceEEEEECC----CCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEE
Confidence 88999999999998 789999999999999999997 666666665 778899999999999999999988
Q ss_pred --------cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC
Q 011216 339 --------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 339 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
.+++||+.+ ...+..+.+|... +.+++|+|++
T Consensus 288 ~~~~~~~~~i~~~d~~~----------------------------------~~~~~~~~~~~~~------v~~~~~s~~~ 327 (369)
T 3zwl_B 288 TSANEGKFEARFYHKIF----------------------------------EEEIGRVQGHFGP------LNTVAISPQG 327 (369)
T ss_dssp -------CEEEEEETTT----------------------------------CCEEEEEECCSSC------EEEEEECTTS
T ss_pred EecCCCcceeEEEecCC----------------------------------CcchhheecccCc------EEEEEECCCC
Confidence 788888876 3556666666532 2334677899
Q ss_pred cEEEEEecCCeEEEEECCCccEEE
Q 011216 411 KYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
++|++++.||.|++|++..+....
T Consensus 328 ~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp SEEEEEETTSEEEEEEECHHHHTC
T ss_pred CEEEEEcCCCeEEEEECccccchh
Confidence 999999999999999998765443
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=271.14 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=197.8
Q ss_pred CCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCce------------ecEEEEE
Q 011216 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS------------FGIFSLK 234 (491)
Q Consensus 167 ~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~i~ 234 (491)
.+.+.|++++|+|++++|++|+.||.|+||++.+++........... ......+|. ..|.+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYN-----VYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEE-----EEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccccee-----EecccccccccccccccccccCceEEEE
Confidence 34568999999999999999999999999999876621100000000 000011354 6799999
Q ss_pred EcCCC--CEEEEEecCCeEEEEECCCCeee---------------------------------------EE-EeccCCCe
Q 011216 235 FSTDG--RELVAGSSDDCIYVYDLEANKLS---------------------------------------LR-ILAHTSDV 272 (491)
Q Consensus 235 ~s~~~--~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~v 272 (491)
|+|++ ..|++++.|+.|++||+.++... .. ..+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 79999999999999999764432 12 35799999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee-------eeccccccEEEEEEcCCC-CEEEEeeCCCcEEEee
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-------VLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWD 344 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~i~~i~~sp~~-~~l~~~~~dg~i~iwd 344 (491)
.+++|+ +++++|++| .|+.|++||++.. ..... .+.+|...|++++|+|++ ++|++++.||.|++||
T Consensus 181 ~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 181 NSISIN-SDYETYLSA-DDLRINLWHLEIT---DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp CEEEEC-TTSSEEEEE-CSSEEEEEETTEE---EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EEEEEc-CCCCEEEEe-CCCeEEEEECCCC---CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 999998 689999998 7999999999621 12222 356899999999999998 9999999999999999
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee------eEEEEecCcccCCCcEEEEEec
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT------LIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~l~~g~~ 418 (491)
+++..... ..+..+.++..... ......+++|+|++++|++++.
T Consensus 256 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 305 (447)
T 3dw8_B 256 MRASALCD------------------------------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY 305 (447)
T ss_dssp TTTCSSSC------------------------------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES
T ss_pred CcCCcccc------------------------------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC
Confidence 98744211 11344444432000 0002234467789999999999
Q ss_pred CCeEEEEECCC-ccEEEEecCCCCC---------------eeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 419 DSCVYVYDLVS-GEQVAALKYHTSP---------------VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 419 dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+.|++||+.+ ++++..+.+|... +..++|+|++++|++++.||.|++||+.++..
T Consensus 306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 9999999997 8888888888642 23499999999999999999999999987653
No 98
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.7e-33 Score=262.67 Aligned_cols=277 Identities=15% Similarity=0.185 Sum_probs=212.3
Q ss_pred ccCCceeEEEeEeCCC----CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC--
Q 011216 165 AKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-- 238 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-- 238 (491)
..+|...|.+++|+|+ ...+++++.++.|++||+.+++......... ...|...|.+++|+|+
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV-----------DADADENFYTCAWTYDSN 82 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE-----------CSCTTCCEEEEEEEECTT
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc-----------ccCCCCcEEEEEeccCCC
Confidence 3578889999999994 4567777778899999998776543332111 1124558999999998
Q ss_pred --CCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee---c
Q 011216 239 --GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---M 313 (491)
Q Consensus 239 --~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~ 313 (491)
+++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|.++++|++++.||.|++||++ .++.+..+ .
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~ 158 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----TDTLVAIFGGVE 158 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT----TTEEEEEECSTT
T ss_pred CCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee----cCeEEEEecccc
Confidence 67999999999999999999999999999999999999995489999999999999999997 66777776 6
Q ss_pred cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCC----CCeeEEEc
Q 011216 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC----DQSVATYK 389 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 389 (491)
+|...|.+++|+|++++|++++.|+.|++||+++......... ...+.++...+.... ........
T Consensus 159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE----------SYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH----------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce----------eEEecCCCCcccccceeeccCcccccc
Confidence 8999999999999999999999999999999987433221110 011111111111110 11122223
Q ss_pred ccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE--------------EEEecCCCCCeeeeEecCC--CC
Q 011216 390 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--------------VAALKYHTSPVRDCSWHPS--QP 453 (491)
Q Consensus 390 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--------------~~~~~~h~~~v~~~~~s~~--~~ 453 (491)
+|... +..+ .|+ +++|++++.||.|++||+.++.. +..+..|...|++++|+|+ ++
T Consensus 229 ~~~~~--v~~~----~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 229 IHRNY--VDCV----RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp SCSSC--CCEE----EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS
T ss_pred CCcce--EEEE----EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc
Confidence 33322 2222 333 67999999999999999987644 7788899999999999999 99
Q ss_pred eEEEEECCCcEEEecCCCCCC
Q 011216 454 MLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 454 ~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+|++++.||.|++||+..+..
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSG
T ss_pred EEEEEecCCcEEEEECCCCCC
Confidence 999999999999999988653
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9e-33 Score=266.22 Aligned_cols=251 Identities=17% Similarity=0.200 Sum_probs=196.7
Q ss_pred CCceeEEEeEeCC-CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEE
Q 011216 167 SLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVA 244 (491)
Q Consensus 167 ~~~~~v~~l~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~ 244 (491)
.|...|++|+|+| ++++|++|+.||.|+|||+.+++...... ..+|...|++++|+| ++++|++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------------~~gH~~~V~~l~f~p~~~~~l~s 182 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------------GIGAGGSITGLKFNPLNTNQFYA 182 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------------CCSSSCCCCEEEECSSCTTEEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------------ccCCCCCEEEEEEeCCCCCEEEE
Confidence 3455799999999 56799999999999999998776433322 235888999999998 7889999
Q ss_pred EecCCeEEEEECCCCeeeEEEec--cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 245 GSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 245 ~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
++.||+|++||++++........ +...+.+++|+ +++++|++|+.||.|++||++ ++.+..+.+|...|+++
T Consensus 183 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-----~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 183 SSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-----GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp ECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-----SCBCCCSBCCSSCEEEE
T ss_pred EeCCCEEEEeeccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-----cceeEEEecccceEEee
Confidence 99999999999987655433332 34567899998 789999999999999999985 45677788999999999
Q ss_pred EEcCCCC-EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEE
Q 011216 323 DSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 323 ~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+|+|++. +|++++.|+.|++||++....... +....+|.. .+
T Consensus 257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-------------------------------~~~~~~h~~------~v 299 (435)
T 4e54_B 257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-------------------------------FLYSLPHRH------PV 299 (435)
T ss_dssp EECTTCSSEEEEEETTSBCCEEETTTCCSSSC-------------------------------CSBCCBCSS------CE
T ss_pred eecCCCceEEEEecCcceeeEEecccccccce-------------------------------EEEeeeccc------cc
Confidence 9999876 678999999999999987543221 111123331 12
Q ss_pred ecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCC------CeeeeEecCCCCeEEEEEC------------CCc
Q 011216 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS------PVRDCSWHPSQPMLVSSSW------------DGD 463 (491)
Q Consensus 402 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~------~v~~~~~s~~~~~l~s~~~------------Dg~ 463 (491)
.+++|+|+|++|++++.||.|++||+.+++....+..|.. .+..+.|+|++.++++++. ++.
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 4557889999999999999999999999988877766543 2455678888887777642 357
Q ss_pred EEEecCCCCCC
Q 011216 464 VVRWEFPGNGE 474 (491)
Q Consensus 464 i~iw~~~~~~~ 474 (491)
|++||..++..
T Consensus 380 i~iwd~~~g~~ 390 (435)
T 4e54_B 380 IDVFDGNSGKM 390 (435)
T ss_dssp EEEECSSSCCE
T ss_pred EEEEECCCCcE
Confidence 99999987653
No 100
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=259.54 Aligned_cols=250 Identities=19% Similarity=0.277 Sum_probs=200.4
Q ss_pred cCCceeEEEeEeCCCCceEE-EEec---CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---
Q 011216 166 KSLRWTVTDTSLSPDQRHLV-YASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--- 238 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~-~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~--- 238 (491)
.+|...|.+++|+|++..++ +++. |+.|++||+.+++....... +|...|.+++|+|+
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~ 79 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---------------EKAKPIKCGTFGATSLQ 79 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---------------EESSCEEEEECTTCCTT
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---------------cccCcEEEEEEcCCCCC
Confidence 45888999999999996555 5555 89999999998775433221 25558999999998
Q ss_pred CCEEEEEecCCeEEEEECCCCe-eeEEEeccCCCeEEEEEec-----CCCCEEEEEeCCCeEEEEeCccccCCCc-ceee
Q 011216 239 GRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD-----ESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV 311 (491)
Q Consensus 239 ~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~i~~~~-----~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~ 311 (491)
+++|++++.||.|++||+.+++ .+..+.+|...|.++.|.+ +++++|++++.||.|++||++ ... .+..
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~----~~~~~~~~ 155 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR----QKDDPVAN 155 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT----SCSSCSEE
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC----CCCCccee
Confidence 6999999999999999999988 8888889999999997642 678899999999999999997 443 5566
Q ss_pred eccccc----cEEEEE----EcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCC
Q 011216 312 LMGHLE----GITFID----SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 312 ~~~~~~----~i~~i~----~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
+..|.. .+.+++ |+|++++|++++.|+.|++||+++..
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------------- 201 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------------------------------- 201 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE----------------------------------
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc----------------------------------
Confidence 655544 788888 78999999999999999999998732
Q ss_pred eeEEEcccceeeeeEEEEecCcccC---CCcEEEEEecCCeEEEEECCCccEEEEe-----cCCCCCeeeeEecCCCC-e
Q 011216 384 SVATYKGHSVLRTLIRCHFSPVYST---GQKYIYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQP-M 454 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~~~~s~~~~-~ 454 (491)
......+.. . ..++.|+| ++.+|++++.||.|++||+.+++.+..+ .+|...|++++|+|+++ +
T Consensus 202 -~~~~~~~~~--~----v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 202 -LRWETNIKN--G----VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp -EEEEEECSS--C----EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred -eeeecCCCC--c----eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 222222221 1 23346777 8999999999999999999887655444 38999999999999999 8
Q ss_pred EEEEECCCcEEEecCCCCCCC
Q 011216 455 LVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 455 l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
|++++.||.|++||+..+...
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC
T ss_pred EEEEeCCCcEEEeecCCCccc
Confidence 999999999999999876543
No 101
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.7e-32 Score=257.72 Aligned_cols=245 Identities=11% Similarity=0.112 Sum_probs=192.7
Q ss_pred cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 121 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 121 ~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
.+|...|.+++|+| ++++|++++.|+.|++||+.+. .+........+...|.+++|+|++++|++++.|+.|++||+.
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence 47999999999999 7899999999999999999864 455554455566789999999999999999999999999994
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCC----CeeeEEEeccCCCeEE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEA----NKLSLRILAHTSDVNT 274 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~ 274 (491)
++...... +|...|.+++|+|+++ +|++++.|+.|++||+.+ +..+..+ +|...|.+
T Consensus 194 -~~~~~~~~----------------~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~ 255 (383)
T 3ei3_B 194 -GHEIFKEK----------------LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNA 255 (383)
T ss_dssp -SCEEEEEE----------------CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEE
T ss_pred -CCEEEEec----------------cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEE
Confidence 33222111 3666899999999999 999999999999999987 5555555 79999999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc-----------------ccEEEEEEcCCCCEEEEeeCC
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-----------------EGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~i~~i~~sp~~~~l~~~~~d 337 (491)
++|+|.++++|++++.|+.|++||++ .......+.+|. ..+..++|+|++++ +++.|
T Consensus 256 ~~~s~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 256 AYFNPTDSTKLLTTDQRNEIRVYSSY----DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp EEECTTTSCEEEEEESSSEEEEEETT----BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred EEEcCCCCCEEEEEcCCCcEEEEECC----CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence 99983389999999999999999998 444434443332 34555777777776 78899
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
+.|++||+.+ +..+..+.++.....+ ...+|+|++++|++|+
T Consensus 330 ~~i~iwd~~~----------------------------------~~~~~~l~~~~~~~~~----~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 330 RTIDIYDANS----------------------------------GGLVHQLRDPNAAGII----SLNKFSPTGDVLASGM 371 (383)
T ss_dssp CCEEEEETTT----------------------------------CCEEEEECBTTBCSCC----CEEEECTTSSEEEEEE
T ss_pred CeEEEEecCC----------------------------------CceeeeecCCCCCceE----EEEEEecCccEEEEec
Confidence 9999999987 3556666654321111 1125777999999997
Q ss_pred cCCeEEEEECCC
Q 011216 418 HDSCVYVYDLVS 429 (491)
Q Consensus 418 ~dg~i~iwd~~~ 429 (491)
||.|++||+.+
T Consensus 372 -d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 -GFNILIWNRED 382 (383)
T ss_dssp -TTEEEEEECC-
T ss_pred -CCcEEEEecCC
Confidence 99999999864
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-32 Score=248.31 Aligned_cols=241 Identities=20% Similarity=0.227 Sum_probs=204.0
Q ss_pred eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
...+|...|++++| |++++|++++.||.|++||+.++....... .|...|.+++|+|++++|+
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVY----------------TGQGFLNSVCYDSEKELLL 75 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEE----------------ECSSCEEEEEEETTTTEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEee----------------cCCccEEEEEECCCCCEEE
Confidence 44788889999999 999999999999999999998776543332 2455899999999999999
Q ss_pred EEecCCeEEEEECCCC---eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEE
Q 011216 244 AGSSDDCIYVYDLEAN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 320 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 320 (491)
+++.||.|++|++... +....+.+|...|.+++|. ++++++++.|+.|++|| .......+..|...+.
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d------~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK------EGSLVYNLQAHNASVW 146 (313)
T ss_dssp EEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE------TTEEEEEEECCSSCEE
T ss_pred EecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc------CCcEEEecccCCCcee
Confidence 9999999999998664 5567788999999999994 67999999999999999 3567778888999999
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc-cceeeeeE
Q 011216 321 FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLI 398 (491)
Q Consensus 321 ~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 398 (491)
+++|+| +++++++++.|+.|++||.. .....+.. +... +
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------------------------~~~~~~~~~~~~~--i- 187 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQND------------------------------------KVIKTFSGIHNDV--V- 187 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETT------------------------------------EEEEEECSSCSSC--E-
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecC------------------------------------ceEEEEeccCccc--E-
Confidence 999988 89999999999999999943 33444444 3321 1
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+.+++|++. +++++.||.|++||+.+++.+..+..|...|++++|+|++ .|++++.||.|++||+..+..
T Consensus 188 ---~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~ 258 (313)
T 3odt_A 188 ---RHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL 258 (313)
T ss_dssp ---EEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE
T ss_pred ---EEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce
Confidence 2335666788 9999999999999999999999999999999999999999 699999999999999987753
No 103
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.4e-32 Score=257.93 Aligned_cols=265 Identities=17% Similarity=0.262 Sum_probs=206.7
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~ 198 (491)
.+++|...|++++|+|||++||+|+.||.|+|||+.+++.+.. ..+|...+.++++ ++.+|++++.|+.+++||.
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~---~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN---MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE---EeCCCCceEEEee--CCCEEEEEeCCCceeEeee
Confidence 3467889999999999999999999999999999999866554 3567778888777 5789999999999999998
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe----eeEEEeccCCCeEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNT 274 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~ 274 (491)
........ .+ .+|...+..+.|+|+++++++++.|+.|++|+..+++ .+.....|...|.+
T Consensus 217 ~~~~~~~~-~~--------------~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~ 281 (420)
T 4gga_A 217 RVAEHHVA-TL--------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281 (420)
T ss_dssp TSSSCEEE-EE--------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEE
T ss_pred cccceeeE-Ee--------------cccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceee
Confidence 76543211 11 1466689999999999999999999999999998765 34566789999999
Q ss_pred EEEecCCCCEEEEE--eCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee--CCCcEEEeeCCCCCC
Q 011216 275 VCFGDESGHLIYSG--SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSS 350 (491)
Q Consensus 275 i~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~--~dg~i~iwd~~~~~~ 350 (491)
++|+|.+.++++++ +.|++|++||++ .+.....+..| ..+.++.|+|+++.+++++ .|+.|+|||+.+
T Consensus 282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~----t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--- 353 (420)
T 4gga_A 282 VAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--- 353 (420)
T ss_dssp EEECTTCTTEEEEEECTTTCEEEEEETT----TTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---
T ss_pred eeeCCCcccEEEEEeecCCCEEEEEeCC----ccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC---
Confidence 99998788888764 579999999998 67777766644 6788999999999988765 789999999987
Q ss_pred ccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
...+..+.+|... +.+++|+|+|++|++|+.|++|+|||+...
T Consensus 354 -------------------------------~~~v~~l~gH~~~------V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 354 -------------------------------MAKVAELKGHTSR------VLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp -------------------------------CCEEEEECCCSSC------EEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred -------------------------------CcEEEEEcCCCCC------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 4678888888743 233467889999999999999999999877
Q ss_pred cEEEEecCCCCCeeeeEe
Q 011216 431 EQVAALKYHTSPVRDCSW 448 (491)
Q Consensus 431 ~~~~~~~~h~~~v~~~~~ 448 (491)
.+....+.+...+....+
T Consensus 397 ~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 397 DPARRREREKASAAKSSL 414 (420)
T ss_dssp SCC---------------
T ss_pred CccchhhhccCCcccccc
Confidence 666665555544443333
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-34 Score=269.48 Aligned_cols=255 Identities=12% Similarity=0.065 Sum_probs=200.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce-----eEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
.|...|.+++|||||++||+++.||.|++|+.+. .+.. .. |.. .|.+++|||||++|++|+.||+|+||
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~---l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN---LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFF 156 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE---CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee---cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEE
Confidence 5589999999999999999999999999999654 2222 12 332 59999999999999999999999999
Q ss_pred ECCCCccccc--cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee---eEEE-eccCC
Q 011216 197 DVGSGTMESL--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI-LAHTS 270 (491)
Q Consensus 197 d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~-~~~~~ 270 (491)
|+.++..... ..+.... ....+|...|.+++|+||| +++++.|+.|++||+..++. ...+ .+|..
T Consensus 157 d~~~~~l~~~~~i~l~ti~-------~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 157 SIRKNSENTPEFYFESSIR-------LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp ECCCCTTTCCCCEEEEEEE-------CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred ECCCCccccccceeeeeee-------cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 9998753111 0111100 0112577799999999999 88899999999999988774 2456 37889
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEE--cCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~--sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
.|.+++|+ ++.|++++ ++.|++||+. .........+|...|..++| +|++..|++++.||+ ++|....
T Consensus 228 ~V~svaFs---g~~LASa~-~~tIkLWd~~----~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~- 297 (588)
T 2j04_A 228 KITDLKIV---DYKVVLTC-PGYVHKIDLK----NYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE- 297 (588)
T ss_dssp CCCCEEEE---TTEEEEEC-SSEEEEEETT----TTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-
T ss_pred cEEEEEEE---CCEEEEEe-CCeEEEEECC----CCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-
Confidence 99999998 47888887 6999999986 44443444489999999999 999999999999999 9998642
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
.+++||+..+++. |+++++|+..
T Consensus 298 -------------------------------------------------------~~~spd~~l~a~~--d~~v~lW~~~ 320 (588)
T 2j04_A 298 -------------------------------------------------------LHVTADNIIAPYL--EKKFKKWSTI 320 (588)
T ss_dssp -------------------------------------------------------EEEECCCSSHHHH--HHHHHHTTTT
T ss_pred -------------------------------------------------------EEECCCceEEEEc--CCEEEEEECC
Confidence 1366688777774 8999999975
Q ss_pred CccEEEEecCCCCCeeeeEecCCCCeEEEEEC
Q 011216 429 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 429 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 460 (491)
.+. +..+++ ...|.+++|+|||+.+|+++.
T Consensus 321 g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 321 WNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 443 445544 667999999999999998863
No 105
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.1e-32 Score=255.19 Aligned_cols=253 Identities=15% Similarity=0.159 Sum_probs=203.1
Q ss_pred ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEE
Q 011216 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELV 243 (491)
Q Consensus 165 ~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~ 243 (491)
...|...|.+++|+|++++|++++.|+.|++|++.++.......... +|...|.+++|+|+++ +|+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~ 73 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------------RYKHPLLCCNFIDNTDLQIY 73 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------------ECSSCEEEEEEEESSSEEEE
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-------------ecCCceEEEEECCCCCcEEE
Confidence 45788899999999999999999999999999998776211111111 3556899999999999 999
Q ss_pred EEecCCeEEEEEC-CCCeeeEEEec--cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC-----Ccceeeeccc
Q 011216 244 AGSSDDCIYVYDL-EANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGH 315 (491)
Q Consensus 244 ~~~~dg~i~vwd~-~~~~~~~~~~~--~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~ 315 (491)
+++.||.|++||+ .+++. ..+.+ |...|.+++|+ + +++|++++.|+.|++||++..... .+++..+. |
T Consensus 74 ~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 74 VGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 9999999999999 77765 66778 99999999999 4 899999999999999999731000 44444555 8
Q ss_pred cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC-CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 316 ~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
...|.+++|+|++ +++++.|+.|++||++. .... .......+..
T Consensus 150 ~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~--------------------------------~~~~~~~~~~- 194 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN--------------------------------GTIEESGLKY- 194 (342)
T ss_dssp CCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC--------------------------------CEEEECSCSS-
T ss_pred CCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc--------------------------------ceeeecCCCC-
Confidence 8999999999987 99999999999999986 4321 1111122221
Q ss_pred eeeEEEEecCcccC-CCcEEEEEecCCeEEEEECCCc------cEEEEecCCCC---------CeeeeEecCCCCeEEEE
Q 011216 395 RTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSG------EQVAALKYHTS---------PVRDCSWHPSQPMLVSS 458 (491)
Q Consensus 395 ~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~---------~v~~~~~s~~~~~l~s~ 458 (491)
. ..+++|+| +++++++++.||.|++|++... +.+..+..|.. .|.+++|+|++++|+++
T Consensus 195 -~----i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 195 -Q----IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp -C----EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred -c----eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence 1 23346788 8999999999999999999887 77788888765 99999999999999999
Q ss_pred ECCCcEEEecCCCCCC
Q 011216 459 SWDGDVVRWEFPGNGE 474 (491)
Q Consensus 459 ~~Dg~i~iw~~~~~~~ 474 (491)
+.||.|++||+..+..
T Consensus 270 ~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 270 GSDGIISCWNLQTRKK 285 (342)
T ss_dssp ETTSCEEEEETTTTEE
T ss_pred cCCceEEEEcCccHhH
Confidence 9999999999987653
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.8e-33 Score=262.76 Aligned_cols=250 Identities=14% Similarity=0.135 Sum_probs=189.1
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEE-----------CCCeEEEEECCCCe-EEEEE-----eeccCCceeEEEeEeCCCC
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGF-----------QASQIRIYDVERGW-KIQKD-----ILAKSLRWTVTDTSLSPDQ 181 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~-----------~dg~i~vw~~~~~~-~~~~~-----~~~~~~~~~v~~l~~sp~~ 181 (491)
.+..|...|.+++++ ++.+++|. .|+.+++|++.+.. .+... .....+...+.+++|||||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 456788888888765 55666654 47789999986542 11111 1122344568999999999
Q ss_pred ceEEEEe--cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 182 RHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 182 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
++|++++ .|++|+|||+.+++...... |...|.+++|+|||++|++++.++ +.+|+..++
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-----------------~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~ 207 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-----------------TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTG 207 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-----------------CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTC
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-----------------CCCceEEEEEccCCceEEecccee-EEEEEeccC
Confidence 9987655 68999999999887654332 334799999999999999988555 777777776
Q ss_pred eeeEE--EeccCCCeEEEEEecCCCCEEEEEeCCC----eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEE
Q 011216 260 KLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 260 ~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~ 333 (491)
+.... ...|...|.+++|+ +++.++++++.|+ .+++|++............+.+|...|++++|+|+|++||+
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las 286 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFI-ADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL 286 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE
T ss_pred cceeeeecCCCCCCEEEEEEc-CCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE
Confidence 65443 34688899999998 7888999998887 68889886332222234567789999999999999999999
Q ss_pred eeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE-cccceeeeeEEEEecCcccCCCcE
Q 011216 334 NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 334 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
|+.|+.|+|||+++ .+.+..+ .+|... +.+++|||||++
T Consensus 287 gs~D~~V~iwd~~~----------------------------------~~~~~~~~~gH~~~------V~~v~fSpdg~~ 326 (365)
T 4h5i_A 287 ASNDNSIALVKLKD----------------------------------LSMSKIFKQAHSFA------ITEVTISPDSTY 326 (365)
T ss_dssp EETTSCEEEEETTT----------------------------------TEEEEEETTSSSSC------EEEEEECTTSCE
T ss_pred EcCCCEEEEEECCC----------------------------------CcEEEEecCcccCC------EEEEEECCCCCE
Confidence 99999999999987 3555554 577643 234478889999
Q ss_pred EEEEecCCeEEEEECCC
Q 011216 413 IYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 413 l~~g~~dg~i~iwd~~~ 429 (491)
||+|+.|++|+|||+..
T Consensus 327 laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSEEEEEECCT
T ss_pred EEEEeCCCeEEEEEcCC
Confidence 99999999999999864
No 107
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.7e-31 Score=238.29 Aligned_cols=281 Identities=12% Similarity=0.152 Sum_probs=191.1
Q ss_pred ceEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC----eEEEEEC
Q 011216 126 RAYVSQFSADGS---LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDV 198 (491)
Q Consensus 126 ~v~~~~~s~dg~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg----~i~iwd~ 198 (491)
.+.++.|-.-|. -+++++. ..|++|+..++.........+.|+.+|..+.+.||..-|++....+ .|+..-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 355666655443 4666654 5899999999855555566677887899999999876555443211 1111111
Q ss_pred CCC-ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe--cCCeEEEEEC-CCCeeeEEEeccCCCeEE
Q 011216 199 GSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDL-EANKLSLRILAHTSDVNT 274 (491)
Q Consensus 199 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~--~dg~i~vwd~-~~~~~~~~~~~~~~~v~~ 274 (491)
... +........ .+|...|.++ ++++.+.+++ .|+.|++|++ .+++.+..+..|...++.
T Consensus 120 spd~~~~~~~l~s-------------~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 120 SSDDESEKQVLLK-------------SGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETI 183 (356)
T ss_dssp ------CCEEEEE-------------EEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCE
T ss_pred CCCccccccEEEe-------------CCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceee
Confidence 110 000000000 1233345443 4565555533 4999999999 558888888899999999
Q ss_pred EEEec--CCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc---ccEEEEEEcCCCCEE------------EEeeCC
Q 011216 275 VCFGD--ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---EGITFIDSRGDGRYL------------ISNGKD 337 (491)
Q Consensus 275 i~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~i~~i~~sp~~~~l------------~~~~~d 337 (491)
++|++ .++.+|++++.|++|+|||+. +++.+..+.+|. ..+.+++|+|+|+++ ++|+.|
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 99984 267999999999999999998 788888887654 357788999999886 567889
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE-----cccceeeeeEEEEecCcccCCCcE
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-----KGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
++|++||..+.. .+..+ .+|... .... .+ ++.+
T Consensus 260 ~tIklWd~~tgk----------------------------------~l~v~~~~~p~Gh~~~--~lsg----~~--sg~~ 297 (356)
T 2w18_A 260 FQLIVINPKTTL----------------------------------SVGVMLYCLPPGQAGR--FLEG----DV--KDHC 297 (356)
T ss_dssp EEEEEEETTTTE----------------------------------EEEEEEECCCTTCCCC--EEEE----EE--ETTE
T ss_pred cEEEEEECCCCE----------------------------------EEEEEEeeccCCCcce--eEcc----cc--CCCE
Confidence 999999998732 22221 122211 1111 11 3678
Q ss_pred EEEEecCCeEEEEECCCccEEEEecCCCCCee-eeEecCCCCeEEEEECCCcEEEecC
Q 011216 413 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 413 l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
+++|+.|++|+|||+.+++.+.++++|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999999999987665 5899999999999999999999986
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2e-31 Score=256.94 Aligned_cols=282 Identities=14% Similarity=0.118 Sum_probs=223.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--eccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
..+.+++|+|++.++++++.++.|++||+.+++...... ....|...|.+++|+|+++++++++.|+.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456699999988888888889999999999886654322 234677789999999999999999999999999998876
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (491)
...... .|...+.+++|+|+++.+++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++
T Consensus 203 ~~~~~~----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~ 264 (433)
T 3bws_A 203 YKATVD----------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLS-KD 264 (433)
T ss_dssp EEEEEE----------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEEC-TT
T ss_pred EEEEEc----------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEc-CC
Confidence 544332 2344799999999999885554 799999999999988777654 4568999998 77
Q ss_pred CCEEEEEe--------CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEE-EEeeCCCcEEEeeCCCCCCcc
Q 011216 282 GHLIYSGS--------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 282 ~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l-~~~~~dg~i~iwd~~~~~~~~ 352 (491)
++.+++++ .|+.|++||++ .++.+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+.
T Consensus 265 g~~l~~~~~~~~~~~~~dg~i~~~d~~----~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---- 335 (433)
T 3bws_A 265 GKELYIAQFSASNQESGGGRLGIYSMD----KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---- 335 (433)
T ss_dssp SSEEEEEEEESCTTCSCCEEEEEEETT----TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----
T ss_pred CCEEEEEECCCCccccCCCeEEEEECC----CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----
Confidence 88888887 58899999997 55544443 566788999999999755 56688999999999862
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec--------------
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-------------- 418 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-------------- 418 (491)
..+..+..... ...++|+|++++|++++.
T Consensus 336 ------------------------------~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 336 ------------------------------KVQKSIPVFDK-------PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp ------------------------------EEEEEEECSSS-------EEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred ------------------------------cEEEEecCCCC-------CCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 23333322111 123467789998888876
Q ss_pred -CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEEC-CCcEEEecCCC
Q 011216 419 -DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-DGDVVRWEFPG 471 (491)
Q Consensus 419 -dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-Dg~i~iw~~~~ 471 (491)
||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999988875 457899999999999998875 99999999863
No 109
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.5e-32 Score=245.22 Aligned_cols=213 Identities=19% Similarity=0.296 Sum_probs=171.3
Q ss_pred CCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC--CeeeEEEeccCCCeEEEEEecC-CCCEEEEEeCCCeEEEEeCc
Q 011216 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~s~dg~i~iwd~~ 300 (491)
.+|...|.+++|+|+|++|++|+.|+.|++||+.. .+.+..+.+|.+.|.+++|+++ ++++|++|+.|++|++||++
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~ 85 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE 85 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence 36888999999999999999999999999999974 3667888999999999999744 48899999999999999997
Q ss_pred cccCCCcceeeeccccccEEEEEEcCC--CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccccc
Q 011216 301 CLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~i~~sp~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
.. ....+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++....
T Consensus 86 ~~--~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---------------------------- 135 (297)
T 2pm7_B 86 NG--RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---------------------------- 135 (297)
T ss_dssp SS--CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----------------------------
T ss_pred CC--ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----------------------------
Confidence 22 11345667789999999999997 89999999999999999986321
Q ss_pred CCCCCeeEEEcccceeeeeEEEEecCcc---------cCCCcEEEEEecCCeEEEEECCCcc----EEEEecCCCCCeee
Q 011216 379 HPCDQSVATYKGHSVLRTLIRCHFSPVY---------STGQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHTSPVRD 445 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------s~~~~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~ 445 (491)
.....+.+|.. .+..+.|+|.. .+++++|++|+.|+.|++||+.+++ .+..+.+|...|.+
T Consensus 136 ----~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 136 ----TSPIIIDAHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp ----BCCEEEECCSS--CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred ----eeeeeeecccC--ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 01123344432 22223333321 1136799999999999999998766 66788899999999
Q ss_pred eEecCCC---CeEEEEECCCcEEEecCCCC
Q 011216 446 CSWHPSQ---PMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 446 ~~~s~~~---~~l~s~~~Dg~i~iw~~~~~ 472 (491)
++|+|++ .+|++++.||+|++|++...
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999995 79999999999999999764
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-31 Score=258.07 Aligned_cols=274 Identities=17% Similarity=0.217 Sum_probs=207.6
Q ss_pred cccCCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-------eEEEEEeeccCCceeEEEeEeCCCCc-eEEEEec
Q 011216 119 PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQR-HLVYASM 189 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~d-g~~l~~~~~dg~i~vw~~~~~-------~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~~~~~ 189 (491)
....|.+.|++++|+|+ +++||+++.+|.|++|++.+. ...........|...|.+++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 45679999999999997 689999999999999999761 01122233457778899999999998 9999999
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCC---eeeEEE
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN---KLSLRI 265 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~---~~~~~~ 265 (491)
||.|++|++.++......... .....+|...|.+++|+| ++.+|++++.||.|++||+.++ +....+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~---------~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDA---------KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEEC---------SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCCCCCCceecc---------ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 999999999875432111000 001124677899999999 7789999999999999999987 566777
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC-EEEEeeCCCcEEEee
Q 011216 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWD 344 (491)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~-~l~~~~~dg~i~iwd 344 (491)
..|...|++++|+|....+|++|+.||.|++||++. ...++..+..|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~---~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC---TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCC---CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 899999999999955556899999999999999982 2456778888999999999999985 689999999999999
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc-EEEEEecCCeEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVY 423 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~ 423 (491)
+........... ........+..+.+|.. .+ ...+|+|+++ +|++++.||.|+
T Consensus 351 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~h~~--~v----~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 351 LSKIGEEQSTED--------------------AEDGPPELLFIHGGHTA--KI----SDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp GGGTTCCCCHHH--------------------HHHCCTTEEEECCCCSS--CE----EEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCccccCccc--------------------cccCCcceEEEcCCCCC--Cc----eEEEECCCCCCEEEEEECCCCEE
Confidence 987432111000 00000134455555542 22 2335677888 999999999999
Q ss_pred EEECCCc
Q 011216 424 VYDLVSG 430 (491)
Q Consensus 424 iwd~~~~ 430 (491)
+|++...
T Consensus 405 iw~~~~~ 411 (430)
T 2xyi_A 405 VWQMAEN 411 (430)
T ss_dssp EEEECHH
T ss_pred EeEcccc
Confidence 9998654
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=5.4e-30 Score=243.50 Aligned_cols=267 Identities=14% Similarity=0.116 Sum_probs=210.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceE-EEEecCCeEEEEECCCCccccccceeccccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (491)
.++++++.|+.|++||+.+++.+.... .+. .+.+++|+|++++| ++++.++.|++||+.+++........
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~---~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~----- 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIP---VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----- 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE---CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEee---cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-----
Confidence 467888899999999999986655432 233 48999999999977 56668999999999988765443211
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEE-EEEeCCCe
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI-YSGSDDNL 293 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l-~s~s~dg~ 293 (491)
..+.+++|+|++++|++++ .++.|++||+.+++.+..+.. ...+.+++|+ ++++.+ ++++.++.
T Consensus 74 ------------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 74 ------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALS-PDGKKLYVTNNGDKT 139 (391)
T ss_dssp ------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEEC-TTSSEEEEEETTTTE
T ss_pred ------------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEEC-CCCCEEEEEeCCCCE
Confidence 1789999999999886554 679999999999998777754 4578999998 667655 78888999
Q ss_pred EEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEE-EEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCC
Q 011216 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
|++||+. .++.+..+..+ ..+..++|+|++++| ++++.++.|++||+++.
T Consensus 140 v~~~d~~----~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------------------------ 190 (391)
T 1l0q_A 140 VSVINTV----TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------------------------ 190 (391)
T ss_dssp EEEEETT----TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------------------------
T ss_pred EEEEECC----CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------------------------
Confidence 9999997 66666666654 556899999999987 57778899999999873
Q ss_pred CcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe---cCCeEEEEECCCccEEEEecCCCCCeeeeEec
Q 011216 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 449 (491)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 449 (491)
..+..+..+. .....+|+|++++|++++ .++.|++||+.+++.+..+..|. .+.+++|+
T Consensus 191 ----------~~~~~~~~~~-------~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s 252 (391)
T 1l0q_A 191 ----------SVIDTVKVEA-------APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT 252 (391)
T ss_dssp ----------EEEEEEECSS-------EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC
T ss_pred ----------eEEEEEecCC-------CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEc
Confidence 2333333222 123346778999999888 68999999999999998888765 47899999
Q ss_pred CCCCeE-EEEECCCcEEEecCCCCC
Q 011216 450 PSQPML-VSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 450 ~~~~~l-~s~~~Dg~i~iw~~~~~~ 473 (491)
|++++| ++++.|+.|++||+.++.
T Consensus 253 ~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 253 PDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCCc
Confidence 999977 666889999999998754
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.3e-31 Score=250.39 Aligned_cols=247 Identities=18% Similarity=0.243 Sum_probs=197.5
Q ss_pred eEEEeEeCCCCceEE-EEecCCeEEEEECCCCccc-cccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEec
Q 011216 171 TVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS 247 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~-~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~ 247 (491)
....++++|+...++ +++.+|.|+||++...... .... ...+|...|.+++|+| ++++|++|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-------------~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP-------------LVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC-------------CBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc-------------eEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 344578888775444 4788999999999654321 1111 1235788999999999 9999999999
Q ss_pred CCeEEEEECCCC-------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee--cccccc
Q 011216 248 DDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEG 318 (491)
Q Consensus 248 dg~i~vwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~ 318 (491)
||.|++||+.++ +.+..+.+|...|.+++|+|...++|++++.|+.|++||++ .++.+..+ ..|...
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG----TGAAVLTLGPDVHPDT 178 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT----TTEEEEEECTTTCCSC
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC----CCCccEEEecCCCCCc
Confidence 999999999987 56778889999999999994444799999999999999998 77788888 789999
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE-cccceeeee
Q 011216 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTL 397 (491)
Q Consensus 319 i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 397 (491)
|.+++|+|++++|++++.|+.|++||+++. ..+..+ .+|... .+
T Consensus 179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------------------------------~~~~~~~~~~~~~-~~ 223 (402)
T 2aq5_A 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKG----------------------------------TVVAEKDRPHEGT-RP 223 (402)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTT----------------------------------EEEEEEECSSCSS-SC
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEeCCCC----------------------------------ceeeeeccCCCCC-cc
Confidence 999999999999999999999999999872 444555 444421 11
Q ss_pred EEEEecCcccCCCcEEEEE---ecCCeEEEEECCCccE-EEEec-CCCCCeeeeEecCCCCeEEEEE-CCCcEEEecCCC
Q 011216 398 IRCHFSPVYSTGQKYIYTG---SHDSCVYVYDLVSGEQ-VAALK-YHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 471 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~g---~~dg~i~iwd~~~~~~-~~~~~-~h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~~~ 471 (491)
.. ..|+|++++|++| +.|+.|++||+.+++. +.... .|...|.+++|+|++++|++++ .||.|++|++..
T Consensus 224 ~~----~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 224 VH----AVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp CE----EEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred eE----EEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 22 2566789999999 7899999999988764 33332 5778899999999999887554 799999999987
Q ss_pred CC
Q 011216 472 NG 473 (491)
Q Consensus 472 ~~ 473 (491)
+.
T Consensus 300 ~~ 301 (402)
T 2aq5_A 300 EA 301 (402)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 113
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.4e-30 Score=249.34 Aligned_cols=238 Identities=23% Similarity=0.403 Sum_probs=200.9
Q ss_pred cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE
Q 011216 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (491)
Q Consensus 166 ~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~ 245 (491)
..|...|.++.| ++++|++|+.||.|++||+.+++...... +|...|.+++| ++++|++|
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~----------------~h~~~v~~l~~--~~~~l~sg 189 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT----------------GHTGSVLCLQY--DERVIITG 189 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC----------------CCSSCEEEEEC--CSSEEEEE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc----------------CCCCcEEEEEE--CCCEEEEE
Confidence 345567888877 79999999999999999998877644332 46778999998 78899999
Q ss_pred ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++|+.||.|++||++... .......+.+|...|.+++|
T Consensus 190 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 190 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ETTSCEEEEESSSCCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSS-CCEEEEEECCCSSCEEEEEE-
T ss_pred cCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCC-CceeeeEecCCCCcEEEEEe-
Confidence 999999999999999999999999999999996 4599999999999999997321 11222677889999999999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
++++|++++.||.|++||+++ ...+..+.+|....... .
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~----------------------------------~~~~~~~~~~~~~v~~~------~ 303 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTST----------------------------------CEFVRTLNGHKRGIACL------Q 303 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTT----------------------------------CCEEEEEECCSSCEEEE------E
T ss_pred -CCCEEEEEeCCCeEEEEECCc----------------------------------CcEEEEEcCCCCcEEEE------E
Confidence 788999999999999999987 35566666665332222 2
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+ +++++++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+..+.
T Consensus 304 ~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 304 Y--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp E--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred e--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 2 4789999999999999999999999999999999999999 78899999999999999997654
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.7e-30 Score=245.89 Aligned_cols=283 Identities=20% Similarity=0.302 Sum_probs=190.6
Q ss_pred cCCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCC---ceEEEEecCCeEEEE
Q 011216 121 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ---RHLVYASMSPIVHIV 196 (491)
Q Consensus 121 ~~h~~~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~---~~l~~~~~dg~i~iw 196 (491)
.+|...|.+++|+| ++++|++++.||.|++||+.++....... +...+.++.|+|.+ .++++++.++.|++|
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLC 171 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEE
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEE
Confidence 46999999999999 77899999999999999999986555432 34478899998854 599999999999999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCe-eeEEE---------
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK-LSLRI--------- 265 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~-~~~~~--------- 265 (491)
|+.+++...... +|...|.+++|+|+++ .|++++.||.|++||+.++. ....+
T Consensus 172 d~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 172 DLKSGSCSHILQ----------------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp ESSSSCCCEEEC----------------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred eCCCcceeeeec----------------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 998876543322 3666899999999998 58999999999999998765 33333
Q ss_pred ------eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc-----cccEEEEEEcCCCCEEEEe
Q 011216 266 ------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-----LEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 266 ------~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~i~~i~~sp~~~~l~~~ 334 (491)
..|...|.+++|+ +++++|++++.||.|++||++ .+........+ ...+........+..++++
T Consensus 236 ~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFT-SDGLHLLTVGTDNRMRLWNSS----NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp CTTTSSCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT----TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred eeccccccccCceeEEEEc-CCCCEEEEecCCCeEEEEECC----CCccceeccccccccccccceeEEecCCCceEEEE
Confidence 4788999999998 789999999999999999998 33333322221 1222222233345667777
Q ss_pred eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEE
Q 011216 335 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 335 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+.++.|++||+.+ ...+..+.+|.... .+++|+|++++|+
T Consensus 311 ~~~~~i~v~d~~~----------------------------------~~~~~~~~~~~~~v------~~~~~s~~~~~l~ 350 (408)
T 4a11_B 311 PYGSTIAVYTVYS----------------------------------GEQITMLKGHYKTV------DCCVFQSNFQELY 350 (408)
T ss_dssp EETTEEEEEETTT----------------------------------CCEEEEECCCSSCE------EEEEEETTTTEEE
T ss_pred ecCCEEEEEECcC----------------------------------CcceeeeccCCCeE------EEEEEcCCCCEEE
Confidence 8899999999987 45677777776322 2336778999999
Q ss_pred EEecCCeEEEEECCCccEEEEecCCCCCeeeeEecC-CCCeEEEEECCCcEEEecCCC
Q 011216 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 415 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
+|+.||.|++||+.+++++.....+... ..+.+ +...+.+++.|+.+++|+.+.
T Consensus 351 s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 351 SGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEETTSCEEEEEECC-------------------------------------------
T ss_pred EECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCcc
Confidence 9999999999999999887665433322 23343 333556777899999998753
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.1e-30 Score=250.95 Aligned_cols=256 Identities=13% Similarity=0.131 Sum_probs=197.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCc---cccccceecc-----------cccc--------------------
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT---MESLANVTEI-----------HDGL-------------------- 216 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~-----------~~~~-------------------- 216 (491)
++.+++|+|+|++|+++ .++.|++||+.+++ .......... ....
T Consensus 6 p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 68899999999966555 57899999999888 3322221100 0000
Q ss_pred -------ccccCCCCCceecEEEEEEcCCCCEE-EEEecCCeEEEEECC--CCeeeEEEe--ccCCCeEEEEEecCCCCE
Q 011216 217 -------DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE--ANKLSLRIL--AHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 217 -------~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~~~ 284 (491)
........+|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+ +++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~ 163 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTT 163 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCE
Confidence 00001112466689999999999996 889999999999999 888877776 567899999998 78899
Q ss_pred EEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC---CCEEEEeeCCCcEEEeeCCCCCCccccccCcccc
Q 011216 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 285 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
|++|+.+|.|++|++............+.+|...|++++|+|+ +++|++++.|+.|++||+++.
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~------------- 230 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC------------- 230 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-------------
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-------------
Confidence 9999999999999997332111133477789999999999999 999999999999999999873
Q ss_pred eeeceeecCCCCcccccCCCCCeeEE-EcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC--
Q 011216 362 EWDYRWMDYPPQARDLKHPCDQSVAT-YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-- 438 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-- 438 (491)
..+.. +.+|... +.+++|+ ++++|++++.|+.|++||+.+++.+..+..
T Consensus 231 ---------------------~~~~~~~~~h~~~------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~ 282 (450)
T 2vdu_B 231 ---------------------FIVDKWLFGHKHF------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS 282 (450)
T ss_dssp ---------------------TCEEEECCCCSSC------EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHH
T ss_pred ---------------------ceeeeeecCCCCc------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchh
Confidence 33333 3345422 2334677 899999999999999999999998887763
Q ss_pred -----------------------CCCCeeeeEecCCCCeEEEEE-CCCcEEEecC
Q 011216 439 -----------------------HTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF 469 (491)
Q Consensus 439 -----------------------h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~ 469 (491)
+...|.+++|+|++++|++++ .|+.|++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 235789999999999999999 8999999999
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=2.9e-29 Score=238.47 Aligned_cols=285 Identities=15% Similarity=0.150 Sum_probs=214.2
Q ss_pred ccCCCCceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEE
Q 011216 120 VDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVD 197 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd 197 (491)
+..| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+..... +. .+.+++|+|++++|++++ .++.|++||
T Consensus 28 ~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~---~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 28 IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA---GS-SPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---SS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---CC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence 3444 458999999999987 5666899999999999866554322 22 799999999999886555 569999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE-EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
+.+++....... ...+.+++|+|+++.| ++++.++.|++||+.+++....+..+ ..+.+++
T Consensus 103 ~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 164 (391)
T 1l0q_A 103 TTSNTVAGTVKT-----------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIA 164 (391)
T ss_dssp TTTTEEEEEEEC-----------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred CCCCeEEEEEeC-----------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEE
Confidence 998876443321 1268899999999977 67778999999999999988877655 5579999
Q ss_pred EecCCCCEE-EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee---CCCcEEEeeCCCCCCcc
Q 011216 277 FGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 277 ~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~---~dg~i~iwd~~~~~~~~ 352 (491)
|+ ++++.+ ++++.++.|++||++ .......+. +...+.+++|+|++++|++++ .++.|++||+.+.
T Consensus 165 ~~-~dg~~l~~~~~~~~~v~~~d~~----~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---- 234 (391)
T 1l0q_A 165 VT-PDGTKVYVANFDSMSISVIDTV----TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---- 234 (391)
T ss_dssp EC-TTSSEEEEEETTTTEEEEEETT----TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----
T ss_pred EC-CCCCEEEEEeCCCCEEEEEECC----CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC----
Confidence 98 666665 678889999999997 555555554 456789999999999999887 6899999999872
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEE-EEEecCCeEEEEECCCcc
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iwd~~~~~ 431 (491)
+.+..+..+... ..++|+|++++| ++++.|+.|++||+.+++
T Consensus 235 ------------------------------~~~~~~~~~~~~-------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 235 ------------------------------KITARIPVGPDP-------AGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp ------------------------------EEEEEEECCSSE-------EEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ------------------------------eEEEEEecCCCc-------cEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 344444444321 234677899877 566789999999999999
Q ss_pred EEEEecCCCCCee---eeE------------ecCCC----------CeEEEEECCCcEEEecCCCCCC
Q 011216 432 QVAALKYHTSPVR---DCS------------WHPSQ----------PMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 432 ~~~~~~~h~~~v~---~~~------------~s~~~----------~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+..+..|..+.. .+. |+.+. -.+...+.|..+++|++..+..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 278 ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp EEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred EEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 9888876654321 122 22211 2355666789999999976653
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1e-29 Score=239.26 Aligned_cols=253 Identities=18% Similarity=0.199 Sum_probs=196.5
Q ss_pred eccCCceeEEEeEeCCC---CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC
Q 011216 164 LAKSLRWTVTDTSLSPD---QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (491)
Q Consensus 164 ~~~~~~~~v~~l~~sp~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~ 240 (491)
...+|...|++++|+|+ +++|++++.||.|++||+.+......... .+|...|.+++|+|+++
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~ 99 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ--------------QMHTGPVLDVCWSDDGS 99 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE--------------EECSSCEEEEEECTTSS
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe--------------ccccCCEEEEEECcCCC
Confidence 45788889999999999 59999999999999999987322111111 13666899999999999
Q ss_pred EEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE--ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc
Q 011216 241 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF--GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
+|++++.||.|++||+.+++... +..|...|.+++| + +++++|++++.||.|++||++ ..+.+..+..+. .
T Consensus 100 ~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~-~ 172 (368)
T 3mmy_A 100 KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTR----SSNPMMVLQLPE-R 172 (368)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSS----CSSCSEEEECSS-C
T ss_pred EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECC----CCcEEEEEecCC-C
Confidence 99999999999999999998765 5689999999999 5 778899999999999999998 667777776654 5
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc-cceeeee
Q 011216 319 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTL 397 (491)
Q Consensus 319 i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 397 (491)
+.++.+.+ ..+++++.++.+.+|+++..... ...... .......
T Consensus 173 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 217 (368)
T 3mmy_A 173 CYCADVIY--PMAVVATAERGLIVYQLENQPSE---------------------------------FRRIESPLKHQHRC 217 (368)
T ss_dssp EEEEEEET--TEEEEEEGGGCEEEEECSSSCEE---------------------------------EEECCCSCSSCEEE
T ss_pred ceEEEecC--CeeEEEeCCCcEEEEEeccccch---------------------------------hhhccccccCCCce
Confidence 66666664 48888999999999999863211 111111 1111222
Q ss_pred EEEEecCcccCCCcEEEEEecCCeEEEEECCCc---cEEEEecCCCC------------CeeeeEecCCCCeEEEEECCC
Q 011216 398 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHTS------------PVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 398 ~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~------------~v~~~~~s~~~~~l~s~~~Dg 462 (491)
........+++ ..+++++.||.|++||+... ..+..+..|.. +|++++|+|++++|++++.||
T Consensus 218 ~~~~~~~~~~~--~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg 295 (368)
T 3mmy_A 218 VAIFKDKQNKP--TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG 295 (368)
T ss_dssp EEEEECTTSCE--EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS
T ss_pred EEEcccCCCCC--CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC
Confidence 22223322222 33999999999999999887 56677777765 799999999999999999999
Q ss_pred cEEEecCCCCCC
Q 011216 463 DVVRWEFPGNGE 474 (491)
Q Consensus 463 ~i~iw~~~~~~~ 474 (491)
.|++||+..+..
T Consensus 296 ~i~iwd~~~~~~ 307 (368)
T 3mmy_A 296 RFSFWDKDARTK 307 (368)
T ss_dssp CEEEEETTTTEE
T ss_pred eEEEEECCCCcE
Confidence 999999987643
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6.6e-29 Score=228.86 Aligned_cols=248 Identities=18% Similarity=0.246 Sum_probs=198.2
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~ 198 (491)
.+++|...|++++|+|+|++||+|+.||+|++|++.+++.+... .+|...+.++ ++++..+++++.++.+++|+.
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~---~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~ 136 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---TSHSARVGSL--SWNSYILSSGSRSGHIHHHDV 136 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECCSSCEEEE--EEETTEEEEEETTSEEEEEET
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe---cCccceEEEe--ecCCCEEEEEecCCceEeeec
Confidence 34678999999999999999999999999999999999666543 4565566654 456789999999999999998
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee----eEEEeccCCCeEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNT 274 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~ 274 (491)
.......... .+|...+..+.+++++++|++++.|+.|++||+.+++. ......+.+.|.+
T Consensus 137 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~ 201 (318)
T 4ggc_A 137 RVAEHHVATL---------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201 (318)
T ss_dssp TSSSCEEEEE---------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEE
T ss_pred CCCceeEEEE---------------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEE
Confidence 7654321111 14666899999999999999999999999999987653 3445578889999
Q ss_pred EEEecCCCCEE--EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee--CCCcEEEeeCCCCCC
Q 011216 275 VCFGDESGHLI--YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSS 350 (491)
Q Consensus 275 i~~~~~~~~~l--~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~--~dg~i~iwd~~~~~~ 350 (491)
+.++|.+.+.+ ++++.++.|++||.+ ..... ....+...+..+.|+|++..+++++ .|+.|++||+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~i~lwd~~----~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--- 273 (318)
T 4ggc_A 202 VAWCPWQSNVLATGGGTSDRHIRIWNVC----SGACL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--- 273 (318)
T ss_dssp EEECTTSTTEEEEEECTTTCEEEEEETT----TCCEE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---
T ss_pred EEecCCCCcEEEEEecCCCCEEEEEecc----ccccc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCC---
Confidence 99997666665 456788999999986 44433 3445678899999999999887654 789999999987
Q ss_pred ccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
.+.+..+.+|... +.+++|+|++++|++|+.||.|+|||+...
T Consensus 274 -------------------------------~~~~~~l~gH~~~------V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 274 -------------------------------MAKVAELKGHTSR------VLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp -------------------------------CCEEEEECCCSSC------EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred -------------------------------CcEEEEEcCCCCC------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 4677888888743 233467889999999999999999998765
Q ss_pred c
Q 011216 431 E 431 (491)
Q Consensus 431 ~ 431 (491)
.
T Consensus 317 d 317 (318)
T 4ggc_A 317 D 317 (318)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.3e-29 Score=237.03 Aligned_cols=263 Identities=13% Similarity=0.091 Sum_probs=181.8
Q ss_pred EEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceec
Q 011216 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (491)
Q Consensus 150 vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 229 (491)
||++.+...+. ....|...|++++|+|||++|++|+.++ +++|++.+++....... ..
T Consensus 3 i~s~~~~~~~~---~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~------------------~~ 60 (355)
T 3vu4_A 3 LGSMITRNPIV---PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM------------------RH 60 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC------------------SC
T ss_pred cccccccCCcc---ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec------------------CC
Confidence 45555443222 3366778999999999999999988765 78999876554322110 13
Q ss_pred EEEEEEcCCCCEE-EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC-c
Q 011216 230 IFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-K 307 (491)
Q Consensus 230 v~~i~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~ 307 (491)
+..+++.++++.+ ++++.|+.|++||+.+++.+..+. +...|.++.++ ++ .++++ .|+.|++||+. .. +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~----~~~~ 131 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLS-RE--FIVVS-YGDVISVFKFG----NPWK 131 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEEC-SS--EEEEE-ETTEEEEEESS----TTCC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEc-CC--EEEEE-EcCEEEEEECC----CCce
Confidence 6677888888877 567788999999999999988875 67799999997 33 34444 47899999997 43 4
Q ss_pred ceeeeccccccEEEEEEcCCCCEEEE--eeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCe-
Q 011216 308 PAGVLMGHLEGITFIDSRGDGRYLIS--NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS- 384 (491)
Q Consensus 308 ~~~~~~~~~~~i~~i~~sp~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 384 (491)
.+..+.. +...+++++ .++++ |+.||.|++||+++.......... .....-.+
T Consensus 132 ~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-------------------~~~~~~~p~ 187 (355)
T 3vu4_A 132 RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-------------------VQQKAILGK 187 (355)
T ss_dssp BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------------------------------C
T ss_pred eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc-------------------ccccccCcc
Confidence 4444443 444556666 56665 688999999999874311100000 00000012
Q ss_pred eEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCe-EEEEECCCccEEEEec-C-CCCCeeeeEecCCCCeEEEEECC
Q 011216 385 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALK-Y-HTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~~~D 461 (491)
+..+.+|.... .+++|+|+|++|++|+.|++ |++||+.+++.+..+. + |...|.+++|+|++++|++++.|
T Consensus 188 ~~~~~~h~~~v------~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 188 GVLIKAHTNPI------KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp CEEECCCSSCE------EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETT
T ss_pred cEEEEccCCce------EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECC
Confidence 56677776332 33467889999999999998 9999999999999998 5 99999999999999999999999
Q ss_pred CcEEEecCCCCC
Q 011216 462 GDVVRWEFPGNG 473 (491)
Q Consensus 462 g~i~iw~~~~~~ 473 (491)
|+|++||+..+.
T Consensus 262 ~~v~iw~~~~~~ 273 (355)
T 3vu4_A 262 WTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEESSCCS
T ss_pred CEEEEEEccCCC
Confidence 999999998764
No 120
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=9e-31 Score=240.92 Aligned_cols=216 Identities=14% Similarity=0.169 Sum_probs=172.8
Q ss_pred ccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC--CceEEEEecCCeE
Q 011216 118 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIV 193 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~--dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~~~dg~i 193 (491)
..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++.. .......+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 51 ~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 51 ADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp EEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred EEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 45789999999999986 489999999999999999987631 122234678889999999998 7899999999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-----------------CCEEEEEecCCeEEEEEC
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----------------GRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-----------------~~~l~~~~~dg~i~vwd~ 256 (491)
++||+..+....... ...+|...|.+++|+|+ +++|++|+.|+.|++||+
T Consensus 130 ~lwd~~~~~~~~~~~-------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKK-------------INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp EEEEECSSSCEEECC-------------BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred EEEecCCCCCcceee-------------eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 999998653211111 11246668899999987 468999999999999999
Q ss_pred CCC---eeeEEEeccCCCeEEEEEecCC---CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 257 EAN---KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 257 ~~~---~~~~~~~~~~~~v~~i~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
... +....+.+|...|.+++|+|.. +++|++++.|++|++||++...........+..|...|.+++|+|++++
T Consensus 197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 276 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANI 276 (316)
T ss_dssp CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCC
T ss_pred CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCE
Confidence 755 4566778999999999998432 3899999999999999987321111123345678899999999999999
Q ss_pred EEEeeCCCcEEEeeCCC
Q 011216 331 LISNGKDQAIKLWDIRK 347 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~ 347 (491)
|++++.|+.|++|+...
T Consensus 277 las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 277 LAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEESSSCEEEEEECT
T ss_pred EEEEcCCCeEEEEEECC
Confidence 99999999999999764
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.1e-30 Score=247.91 Aligned_cols=247 Identities=11% Similarity=0.038 Sum_probs=168.6
Q ss_pred ccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EeeccCCceeEEEeEeCC--------CCceEEEEec
Q 011216 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK--DILAKSLRWTVTDTSLSP--------DQRHLVYASM 189 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~--~~~~~~~~~~v~~l~~sp--------~~~~l~~~~~ 189 (491)
...|...+....+++++++||+|+.|++|+|||+.++..... .....+|.+.|++++|+| |+++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 345666677777888899999999999999999998855433 334678999999999998 8899999999
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCC-EEEEEecCCeEEEEECCCCeeeEE----
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLR---- 264 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---- 264 (491)
|++|+|||+.++....... +|..++.+++|+|++. +|++++.|++|++||+.+++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~----------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGY----------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp TSEEEEEEEETTEEEEEEE----------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC--------
T ss_pred CCeEEEEECCCCceeeeec----------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccccc
Confidence 9999999997765432221 2555899999999874 799999999999999987754322
Q ss_pred ---------------------EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEE
Q 011216 265 ---------------------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 323 (491)
Q Consensus 265 ---------------------~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~ 323 (491)
..+|...+.++.|++++++.|++++.|+++++||+. .......+..|...+..+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~----~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF----ANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------C
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc----cCCCCceEeeecCccccEE
Confidence 235778899999988899999999999999999997 4444444444444333333
Q ss_pred E------------------cC--CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCC
Q 011216 324 S------------------RG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 383 (491)
Q Consensus 324 ~------------------sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
+ +| ++.++++|+.||.|++||+.+. .
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~----------------------------------~ 350 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK----------------------------------D 350 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT----------------------------------T
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC----------------------------------c
Confidence 2 22 3346677889999999999873 2
Q ss_pred eeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 384 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
.+..+.+|.. . +.+++|+|||++||+++.+| +.+|.+
T Consensus 351 ~~~~~~~~~~--~----V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 351 SNSIPIQLGM--P----IVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CCEEEEECSS--C----EEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEEecCCCC--c----EEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3333333432 1 24457888999999998776 666665
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-30 Score=239.81 Aligned_cols=234 Identities=8% Similarity=0.008 Sum_probs=180.1
Q ss_pred eEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEE
Q 011216 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (491)
Q Consensus 175 l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vw 254 (491)
..+.+++++|++|+.||.|++||+.+++...... ...|.++.|+|+ +++++.|+.|++|
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~------------------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT------------------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE------------------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe------------------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 4566788999999999999999999887654433 115667788887 9999999999999
Q ss_pred ECC---------CCeeeEEEe-ccCCCeEEEEEecC--CCCEEEEEeCCCeEEEEeCccccCCCcceeeec-cccccEEE
Q 011216 255 DLE---------ANKLSLRIL-AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF 321 (491)
Q Consensus 255 d~~---------~~~~~~~~~-~~~~~v~~i~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~ 321 (491)
+.. +++.+..+. +|...|.+++|+ + ++++|++++.||.|++||++ .++...... .|...+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~----~~~~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYE----DDSQYIVHSAKSDVEYSS 175 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESS----SSCEEEEECCCSSCCCCE
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECC----CCcEEEEEecCCCCceEE
Confidence 665 444444443 677899999998 6 88999999999999999998 555555543 44557999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc-cceeeeeEEE
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRC 400 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 400 (491)
++|+|++.+|++|+.||.|++||+++.... ...+.. |.. .
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~~~---------------------------------~~~~~~~h~~--~---- 216 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPDQA---------------------------------SSRFPVDEEA--K---- 216 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTTSC---------------------------------CEECCCCTTS--C----
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCCCC---------------------------------ccEEeccCCC--C----
Confidence 999999999999999999999999984321 134444 442 2
Q ss_pred EecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC---CCCCee--eeEecCCCCeEEEEEC-CCcEEEecCCCCCC
Q 011216 401 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTSPVR--DCSWHPSQPMLVSSSW-DGDVVRWEFPGNGE 474 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~~~~s~~~~~l~s~~~-Dg~i~iw~~~~~~~ 474 (491)
+.+.+|+|++.+|++++ |+.|++||+++++.+..+.. |...+. +++|+|++++|++++. |+.|++|++.....
T Consensus 217 v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc
Confidence 23346778999999999 55999999999877655543 445555 5999999999999998 99999999976543
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.8e-29 Score=238.49 Aligned_cols=287 Identities=13% Similarity=0.044 Sum_probs=213.9
Q ss_pred CCceEEEE---EcCCCCEEEEEE--------------CCC--eEEEEECCCC--eEEEEEeeccCCceeEEEeEeCCCCc
Q 011216 124 TSRAYVSQ---FSADGSLFVAGF--------------QAS--QIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQR 182 (491)
Q Consensus 124 ~~~v~~~~---~s~dg~~l~~~~--------------~dg--~i~vw~~~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~ 182 (491)
...++.++ |+|+++.++..+ .++ .|.+||..++ ..+... ..+ ..+.+++|+|++.
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~-~~~~~~~~s~~~~ 135 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRF---KTG-FQPKSVRFIDNTR 135 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEE---ECS-SCBCCCEESSSSE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEE---cCC-CCceEEEEeCCCe
Confidence 45667777 888777665432 233 3444444333 222221 222 2466899999778
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeee
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 262 (491)
++++++.++.|++||+.+++.......... .+|...|.+++|+++++++++++.|+.|++||+.+++.+
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKY-----------KKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHHH-----------HTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCcccc-----------cccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 888888889999999998876543322111 146668999999999999999999999999999999998
Q ss_pred EEEeccCCCeEEEEEecCCCCEE-EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee------
Q 011216 263 LRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG------ 335 (491)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~------ 335 (491)
..+..|...+.+++|+ ++++.+ ++++.|+.|++||++ .++.+..+..+ ..+.+++|+|++++|++++
T Consensus 205 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~----~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 205 ATVDLTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRK----TKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp EEEECSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETT----TTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTT
T ss_pred EEEcCCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECC----CCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCcc
Confidence 8888899999999998 566666 566689999999997 66666666543 5589999999999999888
Q ss_pred --CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEE
Q 011216 336 --KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (491)
Q Consensus 336 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 413 (491)
.|+.|++||+++. +.+..+ .+. .....++|+|+++.+
T Consensus 279 ~~~dg~i~~~d~~~~----------------------------------~~~~~~-~~~------~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 279 ESGGGRLGIYSMDKE----------------------------------KLIDTI-GPP------GNKRHIVSGNTENKI 317 (433)
T ss_dssp CSCCEEEEEEETTTT----------------------------------EEEEEE-EEE------ECEEEEEECSSTTEE
T ss_pred ccCCCeEEEEECCCC----------------------------------cEEeec-cCC------CCcceEEECCCCCEE
Confidence 4889999999862 222222 111 112234677788655
Q ss_pred -EEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEEC---------------CCcEEEecCCCCC
Q 011216 414 -YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW---------------DGDVVRWEFPGNG 473 (491)
Q Consensus 414 -~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---------------Dg~i~iw~~~~~~ 473 (491)
++++.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.++.
T Consensus 318 ~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 318 YVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 666889999999999999888876 6778999999999998888876 5799999997754
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.9e-28 Score=233.83 Aligned_cols=296 Identities=14% Similarity=0.090 Sum_probs=215.1
Q ss_pred CCceEEEEEcCCCC-EEEEEE----CCC----eEEEEEC--CCCeEEEEEeeccCCceeEEEeEeCC-------------
Q 011216 124 TSRAYVSQFSADGS-LFVAGF----QAS----QIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP------------- 179 (491)
Q Consensus 124 ~~~v~~~~~s~dg~-~l~~~~----~dg----~i~vw~~--~~~~~~~~~~~~~~~~~~v~~l~~sp------------- 179 (491)
...+...+|++.|. ++++|+ .+| .|++||+ .+++.+... ....|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-SYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-EEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-EEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 35778889988885 666776 467 8999999 888655321 2344555566666654
Q ss_pred -CCceEEEEecC------CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC---
Q 011216 180 -DQRHLVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--- 249 (491)
Q Consensus 180 -~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg--- 249 (491)
.+..+++++.+ +.|++||+..+....+. +|...+.+++|+|||++|++++.++
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~-----------------~~~~~v~~~~~Spdg~~la~~s~~~~~~ 203 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH-----------------RSPQPLMSPAWSPDGSKLAYVTFESGRS 203 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEE-----------------EESSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEe-----------------CCCCcceeeEEcCCCCEEEEEEecCCCc
Confidence 25666666654 79999999754432221 2445899999999999999999875
Q ss_pred eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE-EEeCCCe--EEEEeCccccCCCcceeeeccccccEEEEEEcC
Q 011216 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 326 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp 326 (491)
.|++||+.+++.. .+..|...+.+++|+ |+++.|+ +++.++. |++||+. .++ ...+..|...+.+++|+|
T Consensus 204 ~i~~~d~~tg~~~-~l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 204 ALVIQTLANGAVR-QVASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLA----SGQ-IRQVTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEEEETTTCCEE-EEECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----TCC-EEECCCCSSCEEEEEECT
T ss_pred EEEEEECCCCcEE-EeecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECC----CCC-EEeCcCCCCcccceEECC
Confidence 9999999998774 566788899999998 7777666 6666654 9999986 433 356777888999999999
Q ss_pred CCCEEEEeeC-CC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEec
Q 011216 327 DGRYLISNGK-DQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 327 ~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
||++|++++. ++ .|.+||+.+.. ...+..+. .....
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~------~~~~~ 315 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGA-----------------------------------PQRITWEG------SQNQD 315 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSC-----------------------------------CEECCCSS------SEEEE
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCC-----------------------------------EEEEecCC------CcccC
Confidence 9999988876 44 57777887632 12222221 11234
Q ss_pred CcccCCCcEEEEEecC---CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCC---cEEEecCCCCCCCCC
Q 011216 404 PVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGNGEAAP 477 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg---~i~iw~~~~~~~~~~ 477 (491)
++|+|+|++|++++.+ ..|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+ .|++||+.++.....
T Consensus 316 ~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l 393 (415)
T 2hqs_A 316 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARL 393 (415)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEEC
T ss_pred eEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEe
Confidence 5788899999988875 58999999988774 455554 899999999999999988877 799999986554333
Q ss_pred CCCccceEEe
Q 011216 478 PLNKKRIRRR 487 (491)
Q Consensus 478 ~~~~~~~~~~ 487 (491)
......++..
T Consensus 394 ~~~~~~v~~~ 403 (415)
T 2hqs_A 394 PATDGQVKFP 403 (415)
T ss_dssp CCSSSEEEEE
T ss_pred eCCCCCCcCC
Confidence 3333444443
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.9e-28 Score=228.64 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=185.7
Q ss_pred ccccCCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE------EEEEeeccCCceeEEEeEeCCC--CceEEEE
Q 011216 118 WPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLRWTVTDTSLSPD--QRHLVYA 187 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~--dg~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~ 187 (491)
..+.+|...|.+++|+| |+++|++|+.||.|++||+.++.. .........|...|.+++|+|+ +++|+++
T Consensus 51 ~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 130 (351)
T 3f3f_A 51 DSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL 130 (351)
T ss_dssp EEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe
Confidence 34578999999999999 699999999999999999987621 1223344577789999999999 9999999
Q ss_pred ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---CCEEEEEecCCeEEEEECCCCee--e
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANKL--S 262 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~~~~~dg~i~vwd~~~~~~--~ 262 (491)
+.|+.|++||+.+++...............+ ...+|...+.+++|+|+ +.++++++.++.+.+|+...++. .
T Consensus 131 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 131 GNDGILRLYDALEPSDLRSWTLTSEMKVLSI---PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp ETTCEEEEEECSSTTCTTCCEEEEEEESCSC---CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCCcEEEecCCChHHhcccccccccccccc---ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999999999998877665544332222111 22356778999999997 89999999999998888877765 5
Q ss_pred EEEeccCCCeEEEEEecCCC----CEEEEEeCCCeEEEEeCccccC----------------------------------
Q 011216 263 LRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWDRRCLNV---------------------------------- 304 (491)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~----~~l~s~s~dg~i~iwd~~~~~~---------------------------------- 304 (491)
..+.+|...|++++|+ +++ ++|++|+.||.|++||++....
T Consensus 208 ~~~~~h~~~i~~~~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWA-PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EECCCCCSCEEEEEEC-CCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eecCCCCcceeEEEEC-CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 6677899999999998 555 7999999999999999973210
Q ss_pred --------CCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 305 --------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 305 --------~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
....+..+.+|...|++++|+|++++|++++.||.|++||+.+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 114566778899999999999999999999999999999998743
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=252.54 Aligned_cols=216 Identities=16% Similarity=0.217 Sum_probs=180.1
Q ss_pred CccccCCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCC--CceEEEEecCCe
Q 011216 117 PWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPI 192 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~d--g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~~~~~dg~ 192 (491)
...+.+|.++|++++|+|+ +++|++|+.||.|++||+.++.. ........|...|.+++|+|+ ++++++++.||.
T Consensus 46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124 (753)
T ss_dssp EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence 3466789999999999998 99999999999999999998742 233345678889999999999 999999999999
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-------------CCCEEEEEecCCeEEEEECCCC
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-------------DGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-------------~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
|++||+.++......... +|...|.+++|+| ++..|++|+.||.|++||+.++
T Consensus 125 I~vwdl~~~~~~~~~~~~--------------~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 125 VSVVEFKENGTTSPIIID--------------AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp EEEEECCSSSCCCCEEEE--------------CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred EEEEEeecCCCcceeEee--------------cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence 999999887543332221 3666899999999 5899999999999999999877
Q ss_pred ----eeeEEEeccCCCeEEEEEecCC---CCEEEEEeCCCeEEEEeCccccCC-CcceeeeccccccEEEEEEcCCCCEE
Q 011216 260 ----KLSLRILAHTSDVNTVCFGDES---GHLIYSGSDDNLCKVWDRRCLNVK-GKPAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 260 ----~~~~~~~~~~~~v~~i~~~~~~---~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~i~~i~~sp~~~~l 331 (491)
.....+.+|...|++++|+ ++ +++|++|+.||.|++||++..... .........|...|++++|+|++++|
T Consensus 191 ~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 269 (753)
T 3jro_A 191 AQTYVLESTLEGHSDWVRDVAWS-PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269 (753)
T ss_dssp TTEEEEEEEECCCSSCEEEEEEC-CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE
T ss_pred cccceeeeeecCCCCcEEEEEec-cCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE
Confidence 4556777899999999998 55 899999999999999999733211 11333445688899999999999999
Q ss_pred EEeeCCCcEEEeeCCCC
Q 011216 332 ISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 332 ~~~~~dg~i~iwd~~~~ 348 (491)
++++.||.|++||++..
T Consensus 270 ~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 270 ALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEECSSSCEECCBCCSS
T ss_pred EEEcCCCEEEEEecCCC
Confidence 99999999999999863
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3.4e-27 Score=231.84 Aligned_cols=282 Identities=13% Similarity=0.079 Sum_probs=215.1
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEEC--CCCccccccc
Q 011216 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV--GSGTMESLAN 208 (491)
Q Consensus 131 ~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~ 208 (491)
+|+|++.++++++.|++|.+||..+++.+..... ++ .+..++|+|||++|++++.|+.|.+||+ .+++......
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~--g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--GY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK 219 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC--ST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec--Cc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence 4899999999999999999999999876655432 23 2889999999999999999999999999 6665433222
Q ss_pred eeccccccccccCCCCCceecEEEEEEcC----CCCEEEEEec-CCeEEEEECCCCeeeEEEec----------cC-CCe
Q 011216 209 VTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HT-SDV 272 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~----~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~----------~~-~~v 272 (491)
. ...+..++|+| ||++|++++. +++|.+||..+++++..+.. |. ..+
T Consensus 220 ~-----------------g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v 282 (543)
T 1nir_A 220 I-----------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV 282 (543)
T ss_dssp C-----------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred c-----------------CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCce
Confidence 1 11578999999 9999999885 89999999999998887754 22 378
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCccee--eeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMS 349 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~~ 349 (491)
..+.++|.+..++++...++.|.+||+. ..+.+. .+ .+...+..+.|+|+|++|+++ ..+++|.+||+.+.
T Consensus 283 ~~i~~s~~~~~~~vs~~~~g~i~vvd~~----~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg- 356 (543)
T 1nir_A 283 AAIIASHEHPEFIVNVKETGKVLLVNYK----DIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR- 356 (543)
T ss_dssp EEEEECSSSSEEEEEETTTTEEEEEECT----TSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-
T ss_pred EEEEECCCCCEEEEEECCCCeEEEEEec----CCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-
Confidence 9999996667788888899999999987 322222 22 345667889999999987655 45889999999873
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC-CcEEEEEe-cCCeEEEEEC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGS-HDSCVYVYDL 427 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~-~dg~i~iwd~ 427 (491)
+.+..+.............+ ++|+ +.+++++. .|++|.+||+
T Consensus 357 ---------------------------------~l~~~i~~g~~ph~g~g~~~---~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 357 ---------------------------------RLSALVDVGKTPHPGRGANF---VHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp ---------------------------------EEEEEEECSSSBCCTTCEEE---EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred ---------------------------------eEEEeeccCCCCCCCCCccc---CCCCCccEEEeccCCCceEEEEEe
Confidence 33333432110000000011 2455 66666665 5899999999
Q ss_pred CC-------ccEEEEecCCCCCeeeeEecCCCCeEEEEE-------CCCcEEEecCCCCCCC
Q 011216 428 VS-------GEQVAALKYHTSPVRDCSWHPSQPMLVSSS-------WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 428 ~~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-------~Dg~i~iw~~~~~~~~ 475 (491)
.+ ++.+.++..|.+.+..++++|++++|++++ .+++|.+||+.+.+..
T Consensus 401 ~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 401 DPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 88 899999999998899999999999999987 2789999999987654
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.1e-27 Score=213.78 Aligned_cols=199 Identities=13% Similarity=0.092 Sum_probs=144.8
Q ss_pred CCceEEEEEcCC----CCEEEEEEC--------------------CCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeC
Q 011216 124 TSRAYVSQFSAD----GSLFVAGFQ--------------------ASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLS 178 (491)
Q Consensus 124 ~~~v~~~~~s~d----g~~l~~~~~--------------------dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~s 178 (491)
...|.+++|+|| ++++++++. |+.|++|++.. ++.+... ..|...++.++|+
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~---~~~~~~v~~l~fs 187 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ---FLMPPEETILTFA 187 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE---EECCCSSCEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee---ccCCCceeeEEee
Confidence 447888888999 888887664 66666666633 3322221 2333356666676
Q ss_pred C---CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE------------E
Q 011216 179 P---DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL------------V 243 (491)
Q Consensus 179 p---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l------------~ 243 (491)
| ++.+|++++.|++|+|||+.+++....+.... .+...+.+++|+|+|.++ +
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~-------------~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD-------------SYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC-------------cceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 6 56789999999999999999998765543110 122368888999999876 5
Q ss_pred EEecCCeEEEEECCCCeeeEEE-----eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccccc
Q 011216 244 AGSSDDCIYVYDLEANKLSLRI-----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 318 (491)
Q Consensus 244 ~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 318 (491)
+|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+. .++.+..+.+|...
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~----tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLL----LGQCTALLPPVSDQ 327 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETT----TCSEEEEECCC--C
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECC----CCcEEEEecCCCCC
Confidence 6778999999999999887655 2666665555553 7789999999999999998 88899999999876
Q ss_pred EE-EEEEcCCCCEEEEeeCCCcEEEeeC
Q 011216 319 IT-FIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 319 i~-~i~~sp~~~~l~~~~~dg~i~iwd~ 345 (491)
+. +++|+|||++|++|+.|++|+|||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 55 5899999999999999999999996
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=8.1e-27 Score=240.39 Aligned_cols=286 Identities=13% Similarity=0.068 Sum_probs=208.8
Q ss_pred CCceEEEEEcCCCCEEEEEEC-CC-----eEEEEECCCCeEEEEEeeccCCc----------------------eeEEEe
Q 011216 124 TSRAYVSQFSADGSLFVAGFQ-AS-----QIRIYDVERGWKIQKDILAKSLR----------------------WTVTDT 175 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v~~l 175 (491)
...+.+++|||||++|++++. |+ .|++||+.+++..... ....+. ..|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence 457899999999999999998 88 9999999988544332 222222 347899
Q ss_pred EeCCCCceEEEEecCCeEEEEECCCC---ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEE
Q 011216 176 SLSPDQRHLVYASMSPIVHIVDVGSG---TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (491)
Q Consensus 176 ~~sp~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~ 252 (491)
+|+|||++|++++. +.|.+||+.++ ....+. .|...+.+++|+|||++|++++ ++.|+
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-----------------~~~~~~~~~~~SPDG~~la~~~-~~~i~ 175 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-----------------HGEGFATDAKLSPKGGFVSFIR-GRNLW 175 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-----------------CSSSCEEEEEECTTSSEEEEEE-TTEEE
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-----------------cCCcccccccCCCCCCEEEEEe-CCcEE
Confidence 99999999999886 99999999987 433222 1334789999999999999887 56899
Q ss_pred EEECCCCeeeEEEeccCCC----------------eEEEEEecCCCCEEEEEeCCC------------------------
Q 011216 253 VYDLEANKLSLRILAHTSD----------------VNTVCFGDESGHLIYSGSDDN------------------------ 292 (491)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~~l~s~s~dg------------------------ 292 (491)
+||+.+++.......+... +.+++|+ ++++.|++++.|+
T Consensus 176 ~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 176 VIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 9999988765544333332 4789998 7888888887665
Q ss_pred ---------eEEEEeCccccCC-Ccceeeec--cccccEEEEEEcCCCCEEEEeeC-----CCcEEEeeCCCCCCccccc
Q 011216 293 ---------LCKVWDRRCLNVK-GKPAGVLM--GHLEGITFIDSRGDGRYLISNGK-----DQAIKLWDIRKMSSNASCN 355 (491)
Q Consensus 293 ---------~i~iwd~~~~~~~-~~~~~~~~--~~~~~i~~i~~sp~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~ 355 (491)
.|.+||+. . ++...... .|...+..++| |||++|++++. +..|.+||+.+..
T Consensus 255 ~~g~~~~~~~l~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------ 323 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPA----EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------ 323 (741)
T ss_dssp BTTSCCCEEEEEEECSS----TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------
T ss_pred CCCCCCCeeEEEEEECC----CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------
Confidence 78889986 3 33333222 46778999999 99999987654 5679999998732
Q ss_pred cCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC-CccEEE
Q 011216 356 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVA 434 (491)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-~~~~~~ 434 (491)
....+..+.. ........++|+|||+++++++.||.+.||.+. .+. ..
T Consensus 324 ----------------------------~~~~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 324 ----------------------------QRVLAHETSP--TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp ----------------------------EEEEEEEECS--SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred ----------------------------eEEEEEcCCC--CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 2222222110 000012356789999999999999977777664 445 77
Q ss_pred EecCCCCCeeee-EecCCCCeEEEE-ECCC--cEEEecCCCC
Q 011216 435 ALKYHTSPVRDC-SWHPSQPMLVSS-SWDG--DVVRWEFPGN 472 (491)
Q Consensus 435 ~~~~h~~~v~~~-~~s~~~~~l~s~-~~Dg--~i~iw~~~~~ 472 (491)
.+..|...|..+ .|+|+++.|+.. +.|+ .+++|++...
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC
Confidence 888888888887 599999977654 4555 8999998653
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=9e-26 Score=215.27 Aligned_cols=263 Identities=16% Similarity=0.150 Sum_probs=198.5
Q ss_pred ccCCCCceEEEEEcC--------------CCCEEEEEECC------CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC
Q 011216 120 VDQTTSRAYVSQFSA--------------DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (491)
Q Consensus 120 ~~~h~~~v~~~~~s~--------------dg~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp 179 (491)
+.+|...+..+++++ .+..++.++.+ +.|++||+..+. ...+ ..|...+.+++|+|
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l---~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV---HRSPQPLMSPAWSP 188 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEE---EEESSCEEEEEECT
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEE---eCCCCcceeeEEcC
Confidence 567777777777765 25667666654 799999998542 2222 34556899999999
Q ss_pred CCceEEEEecCC---eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE-EEecCC--eEEE
Q 011216 180 DQRHLVYASMSP---IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDD--CIYV 253 (491)
Q Consensus 180 ~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-~~~~dg--~i~v 253 (491)
||++|++++.++ .|++||+.+++...+.. |...+.+++|+|||+.|+ +++.++ .|++
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-----------------~~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVRQVAS-----------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-----------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEEEeec-----------------CCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 999999999875 99999999887643221 333789999999999888 555554 4999
Q ss_pred EECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC-CC--eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 254 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
||+.+++. ..+..|...+.+++|+ ++++.|++++. ++ .|.+||+. .+. ...+..+...+.+++|+|+|++
T Consensus 252 ~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~----~~~-~~~l~~~~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 252 MDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNIN----GGA-PQRITWEGSQNQDADVSSDGKF 324 (415)
T ss_dssp EETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETT----SSC-CEECCCSSSEEEEEEECTTSSE
T ss_pred EECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECC----CCC-EEEEecCCCcccCeEECCCCCE
Confidence 99998876 5677888899999998 78888887776 45 67777875 333 3445566778899999999999
Q ss_pred EEEeeCC---CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 331 LISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 331 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
|++++.+ ..|.+||+.+.. ...+..+. ....++|+
T Consensus 325 l~~~~~~~g~~~i~~~d~~~~~-----------------------------------~~~l~~~~-------~~~~~~~s 362 (415)
T 2hqs_A 325 MVMVSSNGGQQHIAKQDLATGG-----------------------------------VQVLSSTF-------LDETPSLA 362 (415)
T ss_dssp EEEEEECSSCEEEEEEETTTCC-----------------------------------EEECCCSS-------SCEEEEEC
T ss_pred EEEEECcCCceEEEEEECCCCC-----------------------------------EEEecCCC-------CcCCeEEc
Confidence 9988764 579999998732 22232221 12345788
Q ss_pred CCCcEEEEEecCC---eEEEEECCCccEEEEecCCCCCeeeeEecCCCC
Q 011216 408 TGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 453 (491)
Q Consensus 408 ~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~ 453 (491)
|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|.-.
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 8999999988877 79999986 666778889999999999999754
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=6.9e-25 Score=215.50 Aligned_cols=299 Identities=12% Similarity=0.069 Sum_probs=217.6
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeEEEEEeeccCCceeEEEeEeCC----CCceEEEEec-CCeEEEEECC
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDV--ERGWKIQKDILAKSLRWTVTDTSLSP----DQRHLVYASM-SPIVHIVDVG 199 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~--~~~~~~~~~~~~~~~~~~v~~l~~sp----~~~~l~~~~~-dg~i~iwd~~ 199 (491)
+.+++|+|||++|++++.|+.|.+||+ .++..+..+. +...+..++|+| ||++|++++. +++|.+||..
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence 899999999999999999999999999 7776555432 223589999999 9999999885 8999999999
Q ss_pred CCccccccceeccccccccccCCCCCcee-cEEEEEEcCCCCE-EEEEecCCeEEEEECCCCeeeE--EEeccCCCeEEE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTV 275 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~i~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~i 275 (491)
+++........... . .....|.. .+..+.++|++.. +++...++.|.+||+.+.+.+. .+ .+...+.++
T Consensus 257 t~~~~~~i~~~g~~----~--~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~ 329 (543)
T 1nir_A 257 TLEPKQIVSTRGMT----V--DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDG 329 (543)
T ss_dssp TCCEEEEEECCEEC----S--SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCE
T ss_pred ccccceeecccCcc----c--CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCc
Confidence 88776554432100 0 00001222 6889999997765 5566678999999998876544 33 466778899
Q ss_pred EEecCCCCEEEEE-eCCCeEEEEeCccccCCCcceeeecc----ccccEEEEEEcCC-CCEEEEee-CCCcEEEeeCCCC
Q 011216 276 CFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGD-GRYLISNG-KDQAIKLWDIRKM 348 (491)
Q Consensus 276 ~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~~i~~sp~-~~~l~~~~-~dg~i~iwd~~~~ 348 (491)
.|+ +++++|+++ ..+++|.+||.. .++.+..+.. |......+ ++|+ +..++++. .|++|.+||+.+.
T Consensus 330 ~~s-pdg~~l~va~~~~~~v~v~D~~----tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~ 403 (543)
T 1nir_A 330 GWD-SSHRYFMTAANNSNKVAVIDSK----DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPK 403 (543)
T ss_dssp EEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred eEC-CCCCEEEEEecCCCeEEEEECC----CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCC
Confidence 998 778866554 568999999997 6666666553 54433333 4677 66667765 5799999999863
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-------cCCe
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-------HDSC 421 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-------~dg~ 421 (491)
..... ..+.+.++.++... .+.+.++|++++|++++ .++.
T Consensus 404 ~~~~~---------------------------~~~~v~~l~~~g~~------~~~v~~~pdg~~l~v~~~~~~~~~~~~~ 450 (543)
T 1nir_A 404 NHPQY---------------------------AWKKVAELQGQGGG------SLFIKTHPKSSHLYVDTTFNPDARISQS 450 (543)
T ss_dssp TCTTT---------------------------BTSEEEEEECSCSC------CCCEECCTTCCEEEECCTTCSSHHHHTC
T ss_pred CCchh---------------------------cCeEEEEEEcCCCC------ceEEEcCCCCCcEEEecCCCCCcccCce
Confidence 21100 02566777766522 12336788999999987 3679
Q ss_pred EEEEECCCccEE-EEe--------cCCCCCeeeeEecCCCCeEEEEE-----CCCcEEEecCCCCCCC
Q 011216 422 VYVYDLVSGEQV-AAL--------KYHTSPVRDCSWHPSQPMLVSSS-----WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 422 i~iwd~~~~~~~-~~~--------~~h~~~v~~~~~s~~~~~l~s~~-----~Dg~i~iw~~~~~~~~ 475 (491)
|.+||+.+++.. ..+ ..+...+..+.|+|+|+.|+++. .|+.|.|||..+.+..
T Consensus 451 v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 451 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp EEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 999999998876 443 35677899999999999888763 3799999999887543
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=3.4e-24 Score=198.59 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=190.8
Q ss_pred EEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEEEECCCCcc-ccc
Q 011216 130 SQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTM-ESL 206 (491)
Q Consensus 130 ~~~s~dg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd~~~~~~-~~~ 206 (491)
..|.+++++ +++++.++.|.+||..+++....... +...+ .++|+|++++|++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 346666665 66777899999999998866554432 23345 9999999997777766 88999999998875 222
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC---eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCC
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
... +..+..+++|+|+|++|+++..++ .|.+||+.+++.+..+.. .....+++|+ ++++
T Consensus 79 ~~~----------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-pdg~ 140 (331)
T 3u4y_A 79 IQE----------------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAIS-PNGN 140 (331)
T ss_dssp EEE----------------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEEC-TTSS
T ss_pred ccc----------------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEEC-CCCC
Confidence 211 111333489999999999655553 899999999988777654 4557999998 5665
Q ss_pred -EEEEEeCCCe-EEEEeCccccCCCcce----eeeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCCCCcccccc
Q 011216 284 -LIYSGSDDNL-CKVWDRRCLNVKGKPA----GVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 284 -~l~s~s~dg~-i~iwd~~~~~~~~~~~----~~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 356 (491)
++++...++. |.+|++.. ...+ .........+..++|+|+|++++++ ..++.|.+||+.+....
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~----- 211 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDA----DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI----- 211 (331)
T ss_dssp CEEEEEETTTTEEEEEEECT----TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-----
T ss_pred EEEEEecCCCceEEEEEECC----CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-----
Confidence 5556666688 99999862 1111 1112334567899999999966554 46889999999864320
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECCCccE--E
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQ--V 433 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~--~ 433 (491)
..+..+.... ....++|+|+|++|++++ .++.|.+||+.+++. +
T Consensus 212 --------------------------~~~~~~~~~~-------~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 212 --------------------------TLLNAVGTNN-------LPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp --------------------------EEEEEEECSS-------CCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEE
T ss_pred --------------------------ceeeeccCCC-------CCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeee
Confidence 1133333221 113346888999877665 477899999998877 4
Q ss_pred EEecCC----CCC---eeeeEecCCCCeEEEEEC-CCcEEEecCCCCC
Q 011216 434 AALKYH----TSP---VRDCSWHPSQPMLVSSSW-DGDVVRWEFPGNG 473 (491)
Q Consensus 434 ~~~~~h----~~~---v~~~~~s~~~~~l~s~~~-Dg~i~iw~~~~~~ 473 (491)
..+..+ ..+ ...++|+||+++|++++. ++.|.+||+....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 259 KSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred cccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 443322 222 245899999998866654 6699999998654
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=3.5e-24 Score=200.27 Aligned_cols=281 Identities=12% Similarity=0.057 Sum_probs=209.3
Q ss_pred CCCceEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEE
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQ-------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVH 194 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~ 194 (491)
....+..++|+|+|++|++++. ++.|.+||..+++........ ..+..++|+|++++++++ ..++.|.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCCEEE
Confidence 3456789999999999888774 568999999998666554332 246789999999966655 4578999
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
+||..+++............. .......+.+++|+|+++++++++ .++.|.+||+.+++....+..+...+
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRT-------EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCC-------SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred EEeCCCCeeEEEEecCCCccc-------cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCcc
Confidence 999998886554433211000 001111378899999999888776 47899999999999888876566678
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc----ccccEEEEEEcCCCCEEEEeeC-CCcEEEeeCCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i~~i~~sp~~~~l~~~~~-dg~i~iwd~~~ 347 (491)
.+++|+ ++++.+++++.++.|.+||.. .++....+.. +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus 188 ~~~~~s-~dg~~l~~~~~~~~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 188 TGLALD-SEGKRLYTTNADGELITIDTA----DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCCEEE-TTTTEEEEECTTSEEEEEETT----TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred ceEEEC-CCCCEEEEEcCCCeEEEEECC----CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 999998 788899999999999999997 5555555443 4556888999999998776655 48999999977
Q ss_pred CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEE
Q 011216 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYD 426 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd 426 (491)
. +.+..+..... ..++|+|+++++++++ .++.|.+||
T Consensus 263 ~----------------------------------~~~~~~~~~~~--------~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 263 G----------------------------------NILAKVAAPES--------LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp C----------------------------------CEEEEEECSSC--------CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred C----------------------------------cEEEEEEcCCC--------ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 3 23333332211 2346778999776666 689999999
Q ss_pred CCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCC
Q 011216 427 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 427 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg 462 (491)
+.+++.+..+..+ ..+.+++|+|+|++|+++..++
T Consensus 301 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 301 AKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999998888754 4679999999999777776654
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=4.3e-25 Score=205.55 Aligned_cols=282 Identities=12% Similarity=0.135 Sum_probs=185.4
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-CeEEEEECC--CCccccccceecccc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVHIVDVG--SGTMESLANVTEIHD 214 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~ 214 (491)
++++++.++.|++|++........... ..+...+.+++|+|++++|++++.+ +.|.+|++. +++.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--- 82 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--- 82 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---
Confidence 344447799999999963211111111 2244468899999999999998887 899999997 555432222211
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECC---CCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE---ANKLSLRILAHTSDVNTVCFGDESGHLIYSGS- 289 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s- 289 (491)
+ ..+..++|+|++++|++++. ++.|.+||+. ..+....+. ....+.+++|+ ++++.+++++
T Consensus 83 -----------~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s-~dg~~l~~~~~ 148 (343)
T 1ri6_A 83 -----------P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANIS-PDNRTLWVPAL 148 (343)
T ss_dssp -----------S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEEC-TTSSEEEEEEG
T ss_pred -----------C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEEC-CCCCEEEEecC
Confidence 0 15678999999998877665 8899999994 333444443 34568999998 7777777776
Q ss_pred CCCeEEEEeCccccCCCccee----eecc-ccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCCccccccCccccee
Q 011216 290 DDNLCKVWDRRCLNVKGKPAG----VLMG-HLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 290 ~dg~i~iwd~~~~~~~~~~~~----~~~~-~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.++.|.+||+... +.... .... ....+..++|+|+++++++++ .++.|.+||+.......
T Consensus 149 ~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~----------- 214 (343)
T 1ri6_A 149 KQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI----------- 214 (343)
T ss_dssp GGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC-----------
T ss_pred CCCEEEEEEecCC---CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE-----------
Confidence 8999999999621 32221 2222 334788999999999776554 78999999996421100
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECC----CccEEEEecC
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV----SGEQVAALKY 438 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~----~~~~~~~~~~ 438 (491)
.....................++|+|++++|+++. .++.|.+||+. +.+.+..+..
T Consensus 215 -------------------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 215 -------------------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp -------------------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred -------------------EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence 00111110000000000112346778998887554 68999999998 2345555655
Q ss_pred CCCCeeeeEecCCCCeEEEEE-CCCcEEEecCCC
Q 011216 439 HTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 471 (491)
Q Consensus 439 h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~~~ 471 (491)
+.. +.+++|+|++++|++++ .|+.|.+|+++.
T Consensus 276 ~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 276 ETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 544 89999999999888887 689999996653
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2.5e-25 Score=202.42 Aligned_cols=257 Identities=15% Similarity=0.128 Sum_probs=186.8
Q ss_pred EEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC-Cccccccceeccccccccc
Q 011216 141 AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS-GTMESLANVTEIHDGLDFS 219 (491)
Q Consensus 141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 219 (491)
.++.++.|++||+.++..... ..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---------- 81 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVV----WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---------- 81 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEE----EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT----------
T ss_pred CCCcceeEEEEeCCCCceeee----ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc----------
Confidence 345789999999998854422 23455799999999999999986 78999999988 765433221
Q ss_pred cCCCCCceecEEEEEEcCCCCEEEEEec--C--CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEE-EEeCCCeE
Q 011216 220 AADDGGYSFGIFSLKFSTDGRELVAGSS--D--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLC 294 (491)
Q Consensus 220 ~~~~~~h~~~v~~i~~s~~~~~l~~~~~--d--g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~-s~s~dg~i 294 (491)
.+...+.+++|+|++++|++++. + ..|..|++.+++. ..+.. ...+..++|+ ++++.|+ +++.++.+
T Consensus 82 -----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~s-pdg~~l~~~~~~~~~~ 153 (297)
T 2ojh_A 82 -----FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-NLPSYWHGWS-PDGKSFTYCGIRDQVF 153 (297)
T ss_dssp -----TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-SSSEEEEEEC-TTSSEEEEEEEETTEE
T ss_pred -----cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec-CCCccceEEC-CCCCEEEEEECCCCce
Confidence 11236788999999999999983 3 4555556555543 34433 3458999998 6677665 78889999
Q ss_pred EEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCC
Q 011216 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 373 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
++|+++. .......+..+...+.+++|+|++++|++++ .++.+.+|++....
T Consensus 154 ~l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~------------------------ 206 (297)
T 2ojh_A 154 DIYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG------------------------ 206 (297)
T ss_dssp EEEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS------------------------
T ss_pred EEEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC------------------------
Confidence 9999752 2334456667788899999999999888766 58899999876311
Q ss_pred cccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-----------CeEEEEECCCccE--EEEecCCC
Q 011216 374 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYVYDLVSGEQ--VAALKYHT 440 (491)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~--~~~~~~h~ 440 (491)
..+..+..+. .....+.|+|++++|++++.+ +.|++||+.+++. +..+.+|.
T Consensus 207 ---------~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 271 (297)
T 2ojh_A 207 ---------SSVERITDSA------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ 271 (297)
T ss_dssp ---------SCEEECCCCS------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred ---------CCcEEEecCC------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence 2233333333 123445788899999988876 5699999988865 44455788
Q ss_pred CCeeeeEecCCCCeEEEEECCC
Q 011216 441 SPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 441 ~~v~~~~~s~~~~~l~s~~~Dg 462 (491)
..+.+++|+|+++.|++++.|.
T Consensus 272 ~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 272 GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccceECCCCCEEEEEEecc
Confidence 8999999999999998887653
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.3e-26 Score=236.42 Aligned_cols=288 Identities=11% Similarity=0.060 Sum_probs=200.7
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce---eEEEeEeCCCCceEEEEecC---------CeE
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMS---------PIV 193 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~l~~~~~d---------g~i 193 (491)
.+.+++|+|||+++++ +.||+|++||+.+++..... ..+.. .|.+++|||||++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~---~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI---EGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE---CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe---ccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence 4677899999997776 68999999999988544322 23332 48899999999999999764 788
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe-
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV- 272 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v- 272 (491)
.+||+.+++...+... .+|...+..++|+|||+.|++++. +.|++||+.+++.......+...+
T Consensus 94 ~~~d~~~~~~~~l~~~--------------~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPP--------------EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVI 158 (723)
T ss_dssp EEEESSSCCCEECCCT--------------TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred EEEECCCCceEeccCC--------------ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCce
Confidence 9999998875222211 123335778999999999999876 789999999988765554444333
Q ss_pred -----------------EEEEEecCCCCEEEEEeCCC----------------------------------eEEEEeCcc
Q 011216 273 -----------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRC 301 (491)
Q Consensus 273 -----------------~~i~~~~~~~~~l~s~s~dg----------------------------------~i~iwd~~~ 301 (491)
.+++|+ |+++.|++++.|+ .|++||+.
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~- 236 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN- 236 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-
T ss_pred ECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-
Confidence 789998 7888888887543 79999986
Q ss_pred ccCCCcceeeeccc------cccEEEEEEcCCCCEEEEeeC----CCcEEEeeCCCCCCccccccCcccceeeceeecCC
Q 011216 302 LNVKGKPAGVLMGH------LEGITFIDSRGDGRYLISNGK----DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 371 (491)
Q Consensus 302 ~~~~~~~~~~~~~~------~~~i~~i~~sp~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (491)
.+.....+..+ ...+..++|+|||++|++... +..|.+||+.+..
T Consensus 237 ---~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---------------------- 291 (723)
T 1xfd_A 237 ---GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---------------------- 291 (723)
T ss_dssp ---SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC----------------------
T ss_pred ---CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc----------------------
Confidence 44433444433 567899999999998876643 3579999988732
Q ss_pred CCcccccCCCCCeeEEEccc-ceeeeeEEEEecCcccCCCcEEEEE--ecCC------eEEEEE-CCCcc--EEEEecCC
Q 011216 372 PQARDLKHPCDQSVATYKGH-SVLRTLIRCHFSPVYSTGQKYIYTG--SHDS------CVYVYD-LVSGE--QVAALKYH 439 (491)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g--~~dg------~i~iwd-~~~~~--~~~~~~~h 439 (491)
....+..+ ..... .....++|||||+.|+.. ..++ .|++|| ...++ ....+..+
T Consensus 292 ------------~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 357 (723)
T 1xfd_A 292 ------------CTKKHEDESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG 357 (723)
T ss_dssp ------------EEEEEEEECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred ------------ceEEEEeccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence 22222111 10000 001256889999977754 4566 577788 34444 14555544
Q ss_pred CCCeee-eEecCCCCeEEEEECC---CcEEEecCCCCC
Q 011216 440 TSPVRD-CSWHPSQPMLVSSSWD---GDVVRWEFPGNG 473 (491)
Q Consensus 440 ~~~v~~-~~~s~~~~~l~s~~~D---g~i~iw~~~~~~ 473 (491)
...+.. ++|+|||+.|+..+.+ +.+++|++....
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 445554 6999999998876655 789999987543
No 137
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=1.9e-24 Score=230.24 Aligned_cols=305 Identities=12% Similarity=0.127 Sum_probs=216.1
Q ss_pred CCCCccccCCCCceEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEeeccCCceeE-------EEeEeCCC
Q 011216 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTV-------TDTSLSPD 180 (491)
Q Consensus 114 ~~~~~~~~~h~~~v~~~~~s~dg~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v-------~~l~~sp~ 180 (491)
......+..|...+.+++|||||++||+++.+ ..|++|++.++. .. ....|...+ ..++|+||
T Consensus 42 gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~---~lt~~~~~~~~~~~~~~~~~~SpD 117 (1045)
T 1k32_A 42 SGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IK---RITYFSGKSTGRRMFTDVAGFDPD 117 (1045)
T ss_dssp TCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EE---ECCCCCEEEETTEECSEEEEECTT
T ss_pred CCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eE---EcccCCCcccccccccccccCCCC
Confidence 34456778899999999999999999987643 479999999874 22 334566677 89999999
Q ss_pred CceEEEEecC------CeEEEEECCCCccccccceec-------------------------------------c-----
Q 011216 181 QRHLVYASMS------PIVHIVDVGSGTMESLANVTE-------------------------------------I----- 212 (491)
Q Consensus 181 ~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-------------------------------------~----- 212 (491)
|+.+++++.+ ..|.+|++.++....+..... .
T Consensus 118 g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~ 197 (1045)
T 1k32_A 118 GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK 197 (1045)
T ss_dssp CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE
T ss_pred CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeE
Confidence 9966666644 468888887665432211000 0
Q ss_pred ---------------ccccccccC-----------C-------CCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 213 ---------------HDGLDFSAA-----------D-------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 213 ---------------~~~~~~~~~-----------~-------~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.+.+.+... . ...|. .+...+|+|||+.|+++ .++.|++||+...
T Consensus 198 ~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~ 275 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE 275 (1045)
T ss_dssp EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred ECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCce
Confidence 000000000 0 00111 24456888888877776 4788888888443
Q ss_pred eeeEEEec-----------cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc-cEEEEEEcCC
Q 011216 260 KLSLRILA-----------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGD 327 (491)
Q Consensus 260 ~~~~~~~~-----------~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~i~~sp~ 327 (491)
.. ..+.. |...+.+++|+|++++.|++++ ++.|.+|++. .+. ...+..|.. .+..++|+ |
T Consensus 276 ~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~----~~~-~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 276 KI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS----GTY-VLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp CE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----SSB-EEECSCCSCEEEEEECSS-S
T ss_pred Ee-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----CCc-eEEccCCCcceEEeeeEc-C
Confidence 33 34433 3446899999845677777776 7899999985 333 344666777 89999999 9
Q ss_pred CCEEEEeeCCCcEE-EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 328 GRYLISNGKDQAIK-LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 328 ~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
|+.|++++.++.+. +||+... ....+.++.. ....++|
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~-----------------------------------~~~~l~~~~~------~~~~~~~ 386 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTG-----------------------------------KAEKFEENLG------NVFAMGV 386 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTC-----------------------------------CEEECCCCCC------SEEEEEE
T ss_pred CCeEEEEECCCceEEEEECCCC-----------------------------------CceEecCCcc------ceeeeEE
Confidence 99999998888888 8898762 1222222221 1234578
Q ss_pred cCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCC----------cEEEecCCCCC
Q 011216 407 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG----------DVVRWEFPGNG 473 (491)
Q Consensus 407 s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg----------~i~iw~~~~~~ 473 (491)
||||++|++++.++.|++||+.+++....+..|.+.+.+++|+|||++|++++.++ .|++||+.++.
T Consensus 387 SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 387 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 88999999999999999999999998888878999999999999999999887654 89999998754
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=6.6e-24 Score=217.39 Aligned_cols=293 Identities=11% Similarity=0.062 Sum_probs=201.3
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC----
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS---- 200 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~---- 200 (491)
..|.+++|||| ++++.+. ++.|++||+.++..... ..+...+.+++|+|||++|+++ .++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l----~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL----FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE----ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc----cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 57999999999 6666654 59999999998844322 1233468889999999999985 689999999988
Q ss_pred -Cccccccceeccc--cccccccCCCCCceecEEEEEEcCCCCEEEEEe-------------------------------
Q 011216 201 -GTMESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------------------- 246 (491)
Q Consensus 201 -~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~------------------------------- 246 (491)
++........... .+.. ....+...+.+++|+|||++|++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQA----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp CCCCEESCSCCBTTEEESSC----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred CCCcEEeccCCCCCeEcccc----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 6654432211100 0000 0000011257899999999999987
Q ss_pred --cCCeEEEEECCCCeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeCCC-----eEEEEeCccccCCCcceeeec-c-c
Q 011216 247 --SDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLM-G-H 315 (491)
Q Consensus 247 --~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~-~-~ 315 (491)
.+..|++||+.+++...... .|...+.+++|+ ++++.|++++.++ .|.+||+. .+.....+. . +
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~----~g~~~~~~~~~~~ 305 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAE----TGRFVRTLFVETD 305 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETT----TCCEEEEEEEEEC
T ss_pred CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECC----CCceeeEEEEccC
Confidence 44679999999887644332 466789999998 7888888877665 89999987 442332222 1 1
Q ss_pred c---ccEEEEEEcC--CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc
Q 011216 316 L---EGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 390 (491)
Q Consensus 316 ~---~~i~~i~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (491)
. ..+..++|+| ||++++++..|+.++||++... +..+..+..
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~---------------------------------~~~~~~l~~ 352 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT---------------------------------GRLIRQVTK 352 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT---------------------------------SCEEEECCC
T ss_pred CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC---------------------------------CCEEEecCC
Confidence 1 1245789999 9999999999999999987521 123333333
Q ss_pred cceeeeeEEEEecCcccCCCcEEEEEec-CC----eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC----
Q 011216 391 HSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---- 461 (491)
Q Consensus 391 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D---- 461 (491)
+... +.. .+.|+|+++.|+.++. ++ .|+.||+.+++ +..+. |...+.+++|+|||++|+.+..+
T Consensus 353 ~~~~--v~~---~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p 425 (706)
T 2z3z_A 353 GEWE--VTN---FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVP 425 (706)
T ss_dssp SSSC--EEE---EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCS
T ss_pred CCeE--EEe---eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCC
Confidence 3211 111 1367889988766555 44 68888887766 34444 67779999999999988876543
Q ss_pred CcEEEecCCCCC
Q 011216 462 GDVVRWEFPGNG 473 (491)
Q Consensus 462 g~i~iw~~~~~~ 473 (491)
+.|++||+.++.
T Consensus 426 ~~i~l~d~~~~~ 437 (706)
T 2z3z_A 426 RKVTVTNIGKGS 437 (706)
T ss_dssp CEEEEEESSSCE
T ss_pred cEEEEEECCCCe
Confidence 569999987764
No 139
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=4e-23 Score=191.68 Aligned_cols=274 Identities=12% Similarity=0.076 Sum_probs=194.2
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEE-EecCCeEEEEECCCCccccccceeccccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 215 (491)
++|++++.++.|.+||+.+++.+........ ...+..++|+|+++++++ +..++.|.+||+.+++..........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---
Confidence 4789999999999999999866554432210 003678999999987655 45578999999998876543332110
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEEe------------cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCC
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
..|...+.+++|+|+|++|++++ .++.|.+||+.+++....+.. ...+.+++|+ ++++
T Consensus 78 --------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~ 147 (337)
T 1pby_B 78 --------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGS 147 (337)
T ss_dssp --------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSS
T ss_pred --------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCC
Confidence 01223466789999999998886 579999999999888776654 4567889998 7777
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC------------------------c
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ------------------------A 339 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg------------------------~ 339 (491)
+|+++ ++.|.+||+. .++....+..+... ..+.|+|+++.++..+..+ .
T Consensus 148 ~l~~~--~~~i~~~d~~----~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPE----AGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp CEEEE--SSSEEEEETT----TTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred EEEEe--CCeEEEEECC----CCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 77776 6899999997 55555555433310 1237899998776554433 3
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
|.+||+.+.... ...+..+. .....++|+|++++++++ +
T Consensus 221 v~~~d~~~~~~~---------------------------------~~~~~~~~------~~~~~~~~s~dg~~l~~~--~ 259 (337)
T 1pby_B 221 LLTMDLETGEMA---------------------------------MREVRIMD------VFYFSTAVNPAKTRAFGA--Y 259 (337)
T ss_dssp EEEEETTTCCEE---------------------------------EEEEEECS------SCEEEEEECTTSSEEEEE--E
T ss_pred eEEEeCCCCCce---------------------------------EeecCCCC------CceeeEEECCCCCEEEEe--C
Confidence 567777652210 01111111 112234678899999988 7
Q ss_pred CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 420 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.|+.|.+||+.+++
T Consensus 260 ~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 260 NVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp SEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 89999999999988887643 467899999999999999999999999998765
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=1.3e-23 Score=210.03 Aligned_cols=276 Identities=14% Similarity=0.037 Sum_probs=191.1
Q ss_pred CCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec---CCeEEEEECC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVG 199 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---dg~i~iwd~~ 199 (491)
..+|++++|+|||++||+++. ||+++||++.++.. .. ....+...+..++|+|| +.+++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~--lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VK--LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EE--CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Ee--eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 457999999999999999887 99999999977633 22 22233347999999999 77777765 4445565543
Q ss_pred C---CccccccceeccccccccccCCCCCceecEEEEEEcCCCCE-EEEEecCCeEEEEECCCCeeeEEEeccCCCeEEE
Q 011216 200 S---GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (491)
Q Consensus 200 ~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i 275 (491)
. +....+... . .+...+|+|+|+. +++.+.++.+.+||+.+++..... .+.. .++
T Consensus 97 ~~~~g~~~~l~~~--------------~----~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~--~~~ 155 (582)
T 3o4h_A 97 TSRPGEEQRLEAV--------------K----PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG--FGF 155 (582)
T ss_dssp TTSTTCCEECTTS--------------C----SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--CEE
T ss_pred ccCCCccccccCC--------------C----CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--ceE
Confidence 2 221111110 0 2335578887753 333344445669999988765444 3333 889
Q ss_pred EEecCCCCEEEEEeCC----CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC--cEEEeeCCCCC
Q 011216 276 CFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMS 349 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg--~i~iwd~~~~~ 349 (491)
+|+ |++++|++++.+ +.|++||+. .++ ...+..|...+..++|+|||+.|+++..++ .|++||+.+..
T Consensus 156 ~~s-pDG~~la~~~~~~~~~~~i~~~d~~----~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 156 VSD-IRGDLIAGLGFFGGGRVSLFTSNLS----SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp EEE-EETTEEEEEEEEETTEEEEEEEETT----TCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred EEC-CCCCEEEEEEEcCCCCeEEEEEcCC----CCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 998 789999988877 789999986 333 346778888899999999999999888888 89999998732
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE--EEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI--RCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
. . .+.++....... .....+.|+|||.++++++.|+.+++|++
T Consensus 230 ~----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 230 V----------------------------------E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp E----------------------------------E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred E----------------------------------E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 1 1 222222100000 00011238899999999999999999999
Q ss_pred CCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCc---EEEecCCC
Q 011216 428 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPG 471 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~---i~iw~~~~ 471 (491)
++.+. .+.+.|.+++|+ +++++++++.+.. +.+|+..+
T Consensus 275 --g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 275 --GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred --CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 66554 344678999999 9999998887744 77777654
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=5.7e-23 Score=191.65 Aligned_cols=276 Identities=11% Similarity=0.052 Sum_probs=176.7
Q ss_pred CCeEEEEECC--CCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec---CCeEEEEECCCCccccccceeccccccccc
Q 011216 145 ASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (491)
Q Consensus 145 dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
++.|.+|.++ ++....... ..+...+..++|+|+|+ |++++. ++.|.+|++.+++.........
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-------- 83 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-------- 83 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE--------
T ss_pred CCCEEEEEEcCCCCeEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeec--------
Confidence 4567777665 453222111 12223577899999999 666554 5899999997766433222111
Q ss_pred cCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCC-Ce--eeEEEec---------cCCCeEEEEEecCCCCEEE
Q 011216 220 AADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NK--LSLRILA---------HTSDVNTVCFGDESGHLIY 286 (491)
Q Consensus 220 ~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~-~~--~~~~~~~---------~~~~v~~i~~~~~~~~~l~ 286 (491)
+...+..++|+|+|++|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+ +++++++
T Consensus 84 ------~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~l~v 156 (347)
T 3hfq_A 84 ------PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNRLAV 156 (347)
T ss_dssp ------ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSCEEE
T ss_pred ------CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCcEEE
Confidence 222577899999999888887 679999999963 22 2222221 12348899998 6777777
Q ss_pred EEeCCCeEEEEeCccccCCCcc--eeeecc-ccccEEEEEEcCCCCEEEE-eeCCCcEEEeeCCCCCCccccccCcccce
Q 011216 287 SGSDDNLCKVWDRRCLNVKGKP--AGVLMG-HLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYE 362 (491)
Q Consensus 287 s~s~dg~i~iwd~~~~~~~~~~--~~~~~~-~~~~i~~i~~sp~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 362 (491)
+...++.|.+|++.. .+.. ...+.. ....+..++|+|||+++++ +..++.|.+|++.......
T Consensus 157 ~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~---------- 223 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSD---AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF---------- 223 (347)
T ss_dssp EETTTTEEEEEEECT---TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE----------
T ss_pred EeCCCCEEEEEEECC---CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce----------
Confidence 777889999999861 1221 111222 2236778999999996665 5567899999987421100
Q ss_pred eeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE-EecCCeEEEEECCC---ccEEEEecC
Q 011216 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLVS---GEQVAALKY 438 (491)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iwd~~~---~~~~~~~~~ 438 (491)
..+..+...............++|+|||++|++ ...++.|.+|++.. .+.+..+..
T Consensus 224 --------------------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 283 (347)
T 3hfq_A 224 --------------------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST 283 (347)
T ss_dssp --------------------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC
T ss_pred --------------------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec
Confidence 011111111000000011234578889998855 45589999999973 245666666
Q ss_pred CCCCeeeeEecCCCCeEEEEECC-CcEEEecCCC
Q 011216 439 HTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPG 471 (491)
Q Consensus 439 h~~~v~~~~~s~~~~~l~s~~~D-g~i~iw~~~~ 471 (491)
+...+..++|+|||++|++++.+ +.|.+|++..
T Consensus 284 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 284 EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 66778999999999988888764 8999996643
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=4.4e-23 Score=219.69 Aligned_cols=304 Identities=12% Similarity=0.034 Sum_probs=220.1
Q ss_pred CCCceEEEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce-eEEEeEeCCCCceEEEEecCCeEE-EEECC
Q 011216 123 TTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-TVTDTSLSPDQRHLVYASMSPIVH-IVDVG 199 (491)
Q Consensus 123 h~~~v~~~~~s-~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~l~~~~~dg~i~-iwd~~ 199 (491)
|...+.+++|| |||++|++++ ++.|.+|++.++.... ...+.. .+..++|+ ||+.|++++.++.+. +|++.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE----ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence 44579999999 9999999887 7899999998874332 234445 79999999 999999999888888 99998
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEec
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (491)
+++...+. +|...+..++|+|||++|++++.++.|++||+.+++....+..|...+.+++|+
T Consensus 368 ~~~~~~l~-----------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S- 429 (1045)
T 1k32_A 368 TGKAEKFE-----------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS- 429 (1045)
T ss_dssp TCCEEECC-----------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC-
T ss_pred CCCceEec-----------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC-
Confidence 76543222 233478999999999999999999999999999998877777899999999998
Q ss_pred CCCCEEEEEeCCC----------eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 280 ESGHLIYSGSDDN----------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 280 ~~~~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
+++++|++++.++ .|++||+. .++ ...+..|...+..++|+|||++|++++.++...+|+.....
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~----~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDME----GRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETT----TTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECC----CCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccc
Confidence 7888888877654 89999996 444 66777888889999999999999999998888899876432
Q ss_pred CccccccCcccceeeceeecCCCCcccc---------------cCC-CCCeeEEEcccceeeeeEEEEecCcccCCCcEE
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDL---------------KHP-CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 413 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 413 (491)
.... . ......+.+.+..... ... ....+..+..+.. ......++||++++
T Consensus 505 ~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~------~~~~~~~s~dg~~~ 571 (1045)
T 1k32_A 505 FSFE--V-----VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG------DYRMIIPLESSILI 571 (1045)
T ss_dssp EECC--S-----CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB------CEEEEEECSSEEEE
T ss_pred cccc--c-----CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCC------ChhheEEcCCCeEE
Confidence 1100 0 0001111111111100 000 0011222222211 12233567899877
Q ss_pred EE-------------EecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 414 YT-------------GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 414 ~~-------------g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
++ ......|++||+.+++..... ..+..++|||||+.|++++.| .|++||+..+.
T Consensus 572 ~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 572 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 75 122457899999888754332 568899999999999999866 79999998776
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=1.8e-23 Score=214.74 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=192.6
Q ss_pred ccccCCCC---ceEEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEE
Q 011216 118 WPVDQTTS---RAYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (491)
Q Consensus 118 ~~~~~h~~---~v~~~~~s~dg~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 185 (491)
..+..|.. .|.+++|||||++|++++.+ +.|.+||+.++.. ..+.....+...+..++|||||+.|+
T Consensus 51 ~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la 129 (723)
T 1xfd_A 51 VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLI 129 (723)
T ss_dssp EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEE
Confidence 34444444 49999999999999999864 7889999998754 33333334444588899999999999
Q ss_pred EEecCCeEEEEECCCCccccccceeccccccccccCCCCCce---------ecEEEEEEcCCCCEEEEEecCC-------
Q 011216 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD------- 249 (491)
Q Consensus 186 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~i~~s~~~~~l~~~~~dg------- 249 (491)
+++. +.|++||+.+++...+..... ....+ .++. ..+.+++|+|||+.|++++.++
T Consensus 130 ~~~~-~~i~~~~~~~g~~~~~~~~~~--~~~~~-----~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~ 201 (723)
T 1xfd_A 130 FIFE-NNIYYCAHVGKQAIRVVSTGK--EGVIY-----NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIME 201 (723)
T ss_dssp EEET-TEEEEESSSSSCCEEEECCCB--TTTEE-----EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEE
T ss_pred EEEC-CeEEEEECCCCceEEEecCCC--CCceE-----CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEE
Confidence 9886 799999999877644332110 00000 0000 1237899999999999987553
Q ss_pred ---------------------------eEEEEECCCCeeeEEEecc------CCCeEEEEEecCCCCEEEEEeC----CC
Q 011216 250 ---------------------------CIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGSD----DN 292 (491)
Q Consensus 250 ---------------------------~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~s~s~----dg 292 (491)
.|++||+.+++....+..+ ...+..++|+ ++++++++.+. +.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 202 LPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp ECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEE
T ss_pred eeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEe-CCCeEEEEEEcCCCCeE
Confidence 7999999988865566543 5678999998 78888876643 35
Q ss_pred eEEEEeCccccCCCcceeeeccc-cccE----EEEEEcCCCCEEEE--eeCCC------cEEEeeC-CCCCCccccccCc
Q 011216 293 LCKVWDRRCLNVKGKPAGVLMGH-LEGI----TFIDSRGDGRYLIS--NGKDQ------AIKLWDI-RKMSSNASCNLGF 358 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~-~~~i----~~i~~sp~~~~l~~--~~~dg------~i~iwd~-~~~~~~~~~~~~~ 358 (491)
.|++||+. .++....+..+ ...+ ..++|+|||+.|+. +..++ .|.+||+ ......
T Consensus 281 ~i~~~d~~----~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~------- 349 (723)
T 1xfd_A 281 ILTLCDAT----TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND------- 349 (723)
T ss_dssp EEEEEETT----TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-------
T ss_pred EEEEEeCC----CCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-------
Confidence 79999987 55544444332 2333 37899999997775 44566 4667773 331100
Q ss_pred ccceeeceeecCCCCcccccCCCCCeeEEEc-ccceeeeeEEEEecCcccCCCcEEEEEecC---CeEEEEECCCcc--E
Q 011216 359 RSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGE--Q 432 (491)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iwd~~~~~--~ 432 (491)
....+. ++... ...+.|+|||+.|+..+.+ +.+++|++.... .
T Consensus 350 -------------------------~~~~l~~~~~~~------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~ 398 (723)
T 1xfd_A 350 -------------------------NIQSITSGDWDV------TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (723)
T ss_dssp -------------------------CCCBSCCSSSCE------EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred -------------------------ceeEeecCCeEE------EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCC
Confidence 011111 11110 1124688899999876655 789999986432 3
Q ss_pred EEEecC---CCCCeeeeEecCCCCeEEEEE
Q 011216 433 VAALKY---HTSPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 433 ~~~~~~---h~~~v~~~~~s~~~~~l~s~~ 459 (491)
...+.. |...+..++|+|||++|+...
T Consensus 399 ~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 399 RQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp CBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred cceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 344543 667789999999999877653
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=2.5e-23 Score=213.14 Aligned_cols=283 Identities=12% Similarity=0.093 Sum_probs=194.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEEeeccCC--------------ceeEEEeEeCCCCceEEEEecCC
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSL--------------RWTVTDTSLSPDQRHLVYASMSP 191 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~--------------~~~v~~l~~sp~~~~l~~~~~dg 191 (491)
+..+.|+ |+.+++++.++ | +||+.+++.+ ......... ...|.+++|+|| +.++++. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 3447777 66777777787 8 9999988652 332222111 136999999999 6666654 69
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC-----CeeeEEEe
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRIL 266 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~ 266 (491)
.|++||+.+++...... +...+.+++|+|||++|+++ .++.|++||+.+ ++......
T Consensus 102 ~i~~~d~~~~~~~~l~~-----------------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~ 163 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFD-----------------TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI 163 (706)
T ss_dssp EEEEEETTTTEEEEEEC-----------------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred EEEEEECCCCceEEccC-----------------CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence 99999998876543322 11246678999999999985 689999999998 77654443
Q ss_pred ccCCC--------------eEEEEEecCCCCEEEEEe---------------------------------CCCeEEEEeC
Q 011216 267 AHTSD--------------VNTVCFGDESGHLIYSGS---------------------------------DDNLCKVWDR 299 (491)
Q Consensus 267 ~~~~~--------------v~~i~~~~~~~~~l~s~s---------------------------------~dg~i~iwd~ 299 (491)
.+... +.++.|+ |++++|++++ .+..|.+||+
T Consensus 164 ~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 164 DGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp CCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred CCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 33332 4889998 8899998887 4468999999
Q ss_pred ccccCCCcceeee--ccccccEEEEEEcCCCCEEEEeeCCC-----cEEEeeCCCCCCccccccCcccceeeceeecCCC
Q 011216 300 RCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (491)
Q Consensus 300 ~~~~~~~~~~~~~--~~~~~~i~~i~~sp~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
. .+...... ..|...+..++|+|||+.|++++.++ .|.+||+.+..
T Consensus 243 ~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~----------------------- 295 (706)
T 2z3z_A 243 A----TGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR----------------------- 295 (706)
T ss_dssp T----TTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-----------------------
T ss_pred C----CCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-----------------------
Confidence 6 44433222 24667899999999999999887775 89999998731
Q ss_pred CcccccCCCCCeeEEEcccceeeeeEEEEecCcccC--CCcEEEEEecCCeEEEEECC-CccEEEEecCCCCCeee-eEe
Q 011216 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST--GQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRD-CSW 448 (491)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-~~~ 448 (491)
....+..... .........+.|+| ||+++++++.|+.++||++. ++..+..+..|...+.. ++|
T Consensus 296 -----------~~~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 296 -----------FVRTLFVETD-KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp -----------EEEEEEEEEC-SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred -----------eeeEEEEccC-CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 1111111000 00000123457899 99999999999999999876 67778888888888887 799
Q ss_pred cCCCCeEEEEECC-C----cEEEecCCCCC
Q 011216 449 HPSQPMLVSSSWD-G----DVVRWEFPGNG 473 (491)
Q Consensus 449 s~~~~~l~s~~~D-g----~i~iw~~~~~~ 473 (491)
+|+++.|+.++.+ + .|..|++.++.
T Consensus 364 spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 364 DPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred cCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 9999977766544 4 56667766543
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=1.9e-23 Score=215.23 Aligned_cols=293 Identities=13% Similarity=0.099 Sum_probs=200.5
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
..|.+++|||||++|++++. +.|++||+.++. ... ....+...+..++|+|||++|++++ ++.|.+||+.+++
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 34889999999999999986 899999998761 122 2234555799999999999999987 5699999999876
Q ss_pred cccccceeccc--ccc-ccccCCCCCceecEEEEEEcCCCCEEEEEecCC------------------------------
Q 011216 203 MESLANVTEIH--DGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------------------------------ 249 (491)
Q Consensus 203 ~~~~~~~~~~~--~~~-~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg------------------------------ 249 (491)
...+....... .+. .+... .....+.+++|+|||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~---~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVAD---EEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHH---HHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred EEEeccCCccceeccccceeee---eccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 64433211100 000 00000 0001246799999999999988765
Q ss_pred ---eEEEEECCC-CeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeC-----CCeEEEEeCccccCCCcceeeeccccc-
Q 011216 250 ---CIYVYDLEA-NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLNVKGKPAGVLMGHLE- 317 (491)
Q Consensus 250 ---~i~vwd~~~-~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~- 317 (491)
.|++||+.+ ++...... .|...+..++| | +++.|++++. +..|++||+. .+.....+..+..
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-Dg~~l~~~~~~~~~~~~~i~~~d~~----~g~~~~~~~~~~~~ 334 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R-DPQHLSFQRQSRDQKKLDLVEVTLA----SNQQRVLAHETSPT 334 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E-ETTEEEEEEEETTSSEEEEEEEETT----TCCEEEEEEEECSS
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-C-CCCEEEEEEecccCCeEEEEEEECC----CCceEEEEEcCCCC
Confidence 899999988 77644332 47778999999 5 6677766543 5689999997 5555555554443
Q ss_pred ---cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee
Q 011216 318 ---GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 394 (491)
Q Consensus 318 ---~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
.+..++|+|||+++++++.||.++||.+.... . ...+..+...
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---------------------------------~-~~~l~~~~~~ 380 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---------------------------------K-AAALTHGNWS 380 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---------------------------------C-EEESCCSSSC
T ss_pred cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC---------------------------------C-eeeeeecceE
Confidence 44688999999999999999988888765311 2 2333333211
Q ss_pred eeeEEEEecCcccCCCcEEEE-EecCC--eEEEEECCC-ccEEEEecCCCCCeeeeEecCCCCeEEEEECC----CcEEE
Q 011216 395 RTLIRCHFSPVYSTGQKYIYT-GSHDS--CVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD----GDVVR 466 (491)
Q Consensus 395 ~~~~~~~~~~~~s~~~~~l~~-g~~dg--~i~iwd~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D----g~i~i 466 (491)
+... ..|+|+++.|+. ++.++ .++||++.. +..+..+.. ...+..++|+|||++|+....+ +.+.+
T Consensus 381 --v~~~---~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l 454 (741)
T 2ecf_A 381 --VDEL---LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIEL 454 (741)
T ss_dssp --EEEE---EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred --EEeE---eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEE
Confidence 1111 147789987755 44455 899999864 555666765 6678899999999988776543 46888
Q ss_pred ecCCC
Q 011216 467 WEFPG 471 (491)
Q Consensus 467 w~~~~ 471 (491)
|+...
T Consensus 455 ~~~~~ 459 (741)
T 2ecf_A 455 FRANG 459 (741)
T ss_dssp EETTS
T ss_pred EEcCC
Confidence 88754
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=3.2e-22 Score=186.03 Aligned_cols=277 Identities=14% Similarity=0.122 Sum_probs=180.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEECC-CeEEEEECC--CCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEEEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQA-SQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD 197 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~d-g~i~vw~~~--~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd 197 (491)
.|...+.+++|+|+|++|++++.+ +.|.+|++. ++.... ......+. .+..++|+|++++|++++. ++.|.+||
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 456778899999999999988886 999999997 443221 11112222 6889999999998877765 78999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCC-CeeeE----EEec-cCC
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLSL----RILA-HTS 270 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~ 270 (491)
+..+.......... ....+.+++|+|+++++++++ .++.|.+||+.+ ++... .+.. ...
T Consensus 113 ~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T 1ri6_A 113 LEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA 178 (343)
T ss_dssp EETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred CCCCcccccccccc--------------CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence 95332211111111 011477899999999888887 899999999987 54432 2222 345
Q ss_pred CeEEEEEecCCCCEEE-EEeCCCeEEEEeCccccCCCcceeeec---cc---cccEEEEEEcCCCCEEEE-eeCCCcEEE
Q 011216 271 DVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLM---GH---LEGITFIDSRGDGRYLIS-NGKDQAIKL 342 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~---~~~i~~i~~sp~~~~l~~-~~~dg~i~i 342 (491)
.+.+++|+ +++++++ ++..++.|.+|++.............. .. ...+..++|+|++++|++ +..++.|.+
T Consensus 179 ~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 179 GPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 78899998 6777554 555889999999852111111122221 11 235678999999998874 447899999
Q ss_pred eeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCe
Q 011216 343 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSC 421 (491)
Q Consensus 343 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~ 421 (491)
||+...... ...+..+..+.. ...++|+|++++|++++ .++.
T Consensus 258 ~d~~~~~~~------------------------------~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 258 FSVSEDGSV------------------------------LSKEGFQPTETQ-------PRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp EEECTTSCC------------------------------EEEEEEEECSSS-------CCCEEECTTSSEEEEECTTTCE
T ss_pred EEEcCCCCc------------------------------eEEeeeecCCCc-------cceEEECCCCCEEEEecCCCCe
Confidence 999731100 012222222211 12346788999888888 5799
Q ss_pred EEEEE--CCCcc--EEEEecCCCCCeeeeEecCCCC
Q 011216 422 VYVYD--LVSGE--QVAALKYHTSPVRDCSWHPSQP 453 (491)
Q Consensus 422 i~iwd--~~~~~--~~~~~~~h~~~v~~~~~s~~~~ 453 (491)
|.+|+ ..+++ .+..+.. .....+++|.|+.+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 99995 44554 3444443 24467788877544
No 147
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.91 E-value=2.1e-22 Score=190.80 Aligned_cols=292 Identities=15% Similarity=0.107 Sum_probs=193.9
Q ss_pred ccccCCCCceEE-----EEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec
Q 011216 118 WPVDQTTSRAYV-----SQFSADGSLFVAGFQ-AS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (491)
Q Consensus 118 ~~~~~h~~~v~~-----~~~s~dg~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~ 189 (491)
..+..|...... .+|||||++|+.++. +| .|.+||+.+++... ....+...+..+.|+||++.|++++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCCEEEEEeC
Confidence 344455555555 789999999999887 66 48889998874432 22344434446789999999999999
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEE--EEEEcCCCCEEEEE----------------------
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF--SLKFSTDGRELVAG---------------------- 245 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~i~~s~~~~~l~~~---------------------- 245 (491)
++.|.+||+.+++...+..... ..+. ...++++++.++..
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~----------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPA----------------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCT----------------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred CCeEEEEECCCCcceeeeechh----------------hcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 9999999999987654433221 0222 23458999987742
Q ss_pred ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC-CCCEEEEEeCC------CeEEEEeCccccCCCcceeeecccc--
Q 011216 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGHL-- 316 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~-- 316 (491)
..+..|++||+.+++. ..+..+...+..+.|+ | +++.|+....+ ..|.++|.. +.....+..+.
T Consensus 165 ~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~-----~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGES-TVILQENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINED-----GTNMRKVKTHAEG 237 (388)
T ss_dssp CCCEEEEEEETTTCCE-EEEEEESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETT-----SCCCEESCCCCTT
T ss_pred CCcceEEEEECCCCce-EEeecCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCC-----CCceEEeeeCCCC
Confidence 2346899999998865 4455677789999999 6 78877776653 367777764 23334444444
Q ss_pred ccEEEEEEcCCCCEEEEeeC-CC----cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc
Q 011216 317 EGITFIDSRGDGRYLISNGK-DQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
..+..++|+|||+.|+..+. ++ .|.+||+.+... ..+..+.++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--------------------------------~~l~~~~~~ 285 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--------------------------------RQLTSMPAC 285 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--------------------------------EEEEEECCE
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--------------------------------EEEEcCCCc
Confidence 35778899999998765443 22 399999987431 112222221
Q ss_pred ceeeeeEEEEecCcccCCCcEEEEE---------ecCCeEEEEECCCccEEEEecCCCC-----------CeeeeEecCC
Q 011216 392 SVLRTLIRCHFSPVYSTGQKYIYTG---------SHDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPS 451 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~g---------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~s~~ 451 (491)
. ......-...|+|||+.|+.. ..+..|++||+.+++. ..+..|.. .+.+++|+||
T Consensus 286 ~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spD 361 (388)
T 3pe7_A 286 S---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPD 361 (388)
T ss_dssp E---EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTT
T ss_pred e---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCC
Confidence 0 000001112578899988754 4466899999988765 44554555 5788999999
Q ss_pred CCeEEEEE-CCCcEEEecCCC
Q 011216 452 QPMLVSSS-WDGDVVRWEFPG 471 (491)
Q Consensus 452 ~~~l~s~~-~Dg~i~iw~~~~ 471 (491)
|+.|+.++ .+|...+|.++-
T Consensus 362 g~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 362 DKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp SSEEEEEECTTSSCEEEEEEC
T ss_pred CCEEEEEecCCCceeEEEEEC
Confidence 99877665 577777777654
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=3.3e-22 Score=181.73 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=172.4
Q ss_pred CccccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeCCCCceEEEEec--CC--
Q 011216 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SP-- 191 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~--dg-- 191 (491)
...+..|...|.+++|+|||++|++++ ++.|++||+.+ +..... ....+...+.+++|+|++++|++++. ++
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--DTGFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC--CCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe--ccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 345567889999999999999999986 78999999998 643321 22222357889999999999999983 33
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE-EEecCCeEEEEECCC-CeeeEEEeccC
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEA-NKLSLRILAHT 269 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-~~~~dg~i~vwd~~~-~~~~~~~~~~~ 269 (491)
.|.+|+..++....+.. ...+..++|+|+++.|+ +++.++.+.+|++.. ......+..+.
T Consensus 111 ~l~~~~~~~~~~~~~~~------------------~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTK------------------NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp EEEEEETTCCCCEECCS------------------SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred eEEEEECCCCceEEeec------------------CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 45555555544322111 11478899999999887 677899999998632 23345566788
Q ss_pred CCeEEEEEecCCCCEEEEEe-CCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-----------
Q 011216 270 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------- 337 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d----------- 337 (491)
..+.+++|+ ++++.|+.++ .++.+++|++.. .......+..|...+..++|+|++++|++++.+
T Consensus 173 ~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 173 GRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRV---DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEET---TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred CccccceEC-CCCCEEEEEecCCCCccEEEECC---CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 899999998 6777766655 589999998851 334556677777889999999999999988765
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
+.|.+||+.+... ..+..+.++.. ....+.|+|++++|++++
T Consensus 249 ~~l~~~d~~~~~~--------------------------------~~~~~~~~~~~------~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 249 VRVQLMDMDGGNV--------------------------------ETLFDLFGGQG------TMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp EEEEEEETTSCSC--------------------------------EEEEEEEESTT------TSCSCCBCTTSSEEEEEE
T ss_pred eEEEEEecCCCCc--------------------------------eeeeccCCCCc------ccccceECCCCCEEEEEE
Confidence 5699999986321 11222222221 124568999999999887
Q ss_pred cCC
Q 011216 418 HDS 420 (491)
Q Consensus 418 ~dg 420 (491)
.+.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 754
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=6.2e-22 Score=184.62 Aligned_cols=282 Identities=14% Similarity=0.096 Sum_probs=183.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEEEEECCCCcccccc
Q 011216 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~ 207 (491)
.++++++++++++++.++.|.+||+.+++.+...... ....+..++|+|++++++++ ..++.|.+||+.+++.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 4578889999999999999999999998665543322 11146789999999866554 56889999999988765433
Q ss_pred ceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC------------CeEEEEECCCCeee---EEEeccCCCe
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------------DCIYVYDLEANKLS---LRILAHTSDV 272 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~---~~~~~~~~~v 272 (491)
...... ......+.+++|+|+|++|++++.+ +.|.+||+.+++.. ..+ .+...+
T Consensus 82 ~~~~~~----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 150 (349)
T 1jmx_B 82 NLSSVP----------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQV 150 (349)
T ss_dssp ESCCST----------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSC
T ss_pred Eccccc----------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcc
Confidence 221100 0012246789999999999998865 89999999885432 333 344568
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc------------------------ccEEEEEEcCCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------------------------EGITFIDSRGDG 328 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------------~~i~~i~~sp~~ 328 (491)
.+++|+ ++++ +++++. .|.+||+. .++.+..+..+. .....+++++++
T Consensus 151 ~~~~~s-~dg~-l~~~~~--~i~~~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 222 (349)
T 1jmx_B 151 YLMRAA-DDGS-LYVAGP--DIYKMDVK----TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD 222 (349)
T ss_dssp CCEEEC-TTSC-EEEESS--SEEEECTT----TCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred cceeEC-CCCc-EEEccC--cEEEEeCC----CCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence 899998 6777 555544 49999987 555444443221 023445566544
Q ss_pred CEEEEeeCC-CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 329 RYLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 329 ~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
......... ..+..+|..+.. +..+.... ........+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~----~~~~~~~~~~s 263 (349)
T 1jmx_B 223 KQDPATADLLYGYLSVDLKTGK-----------------------------------THTQEFAD----LTELYFTGLRS 263 (349)
T ss_dssp ----CCCEEEEEEEEEETTTCC-----------------------------------EEEEEEEE----CSSCEEEEEEC
T ss_pred cCCccccccceeEEEEeccCCc-----------------------------------EEeccccc----CCCcceeeEec
Confidence 221110000 112224443311 11111000 00112345688
Q ss_pred C-CCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 408 T-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 408 ~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
| ++++++++ ++.|++||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+
T Consensus 264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred CCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 8 99999988 88999999999998887763 3457899999999999888889999999998754
No 150
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=1.9e-21 Score=185.91 Aligned_cols=213 Identities=16% Similarity=0.124 Sum_probs=154.3
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----------eEEEEE--eeccCCceeEEEeEeCCCCceEE----EE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----------WKIQKD--ILAKSLRWTVTDTSLSPDQRHLV----YA 187 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~----------~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~----~~ 187 (491)
...++.+++++++.+|++++.++ ++||+.... ..+... .....+...|.+++|+|++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688999999999999999887 888875321 001100 01112345799999999999999 67
Q ss_pred ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEEe
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
+.|+.|+|||+.++.......... ........+|...|.+++|+|+ +.+|++++.||.|++||+.++.......
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRP-----FAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCC-----SEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcce-----eeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc
Confidence 889999999986541000000000 0001122357789999999997 7899999999999999999987776777
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc-------ccccEEEEEEcCCCCEEEEe-eCCC
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------HLEGITFIDSRGDGRYLISN-GKDQ 338 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i~~i~~sp~~~~l~~~-~~dg 338 (491)
+|...|.+++|+ +++++|++|+.||.|++||.+ +.....+.. |...|.+++|++++.++++. ..+|
T Consensus 190 ~~~~~v~~v~ws-pdg~~lasgs~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 190 PSTVAVTSVCWS-PKGKQLAVGKQNGTVVQYLPT-----LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp CGGGCEEEEEEC-TTSSCEEEEETTSCEEEECTT-----CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred CCCCceeEEEEc-CCCCEEEEEcCCCcEEEEccC-----CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 899999999998 779999999999999999986 222333322 33489999999988877543 3333
Q ss_pred ------cEEEeeCCCC
Q 011216 339 ------AIKLWDIRKM 348 (491)
Q Consensus 339 ------~i~iwd~~~~ 348 (491)
.+++|++++.
T Consensus 264 ~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 264 TLETSPDVVMALLPKK 279 (434)
T ss_dssp CSSSCCEEEEEECCCT
T ss_pred ccCCCCceEEEEeccC
Confidence 3899999864
No 151
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=3.9e-21 Score=177.93 Aligned_cols=271 Identities=9% Similarity=0.056 Sum_probs=174.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeE-EEEEeeccCCceeEEEeEeCCCCceEEEEecCC---eEEEE
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWK-IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIV 196 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~-dg~i~vw~~~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg---~i~iw 196 (491)
.+...+ +++|+|||++|++++. ++.|.+||+.++.. .... . .+..+..+++|+|++++|+++..++ .|.+|
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-Q--EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-E--ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-c--cCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 345566 9999999997776665 88999999998865 3322 2 2222344499999999999555442 99999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCe-EEEEECCCCeee----EEEeccCC
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDC-IYVYDLEANKLS----LRILAHTS 270 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~-i~vwd~~~~~~~----~~~~~~~~ 270 (491)
|+.+++........ ..+.+++|+|+|++|+++ ..++. |.+|++.....+ ........
T Consensus 114 d~~~~~~~~~~~~~-----------------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 176 (331)
T 3u4y_A 114 SFLKNKFISTIPIP-----------------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGT 176 (331)
T ss_dssp ETTTTEEEEEEECC-----------------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSS
T ss_pred ECCCCCeEEEEECC-----------------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCC
Confidence 99988764432211 146899999999866555 45577 999998764433 12223455
Q ss_pred CeEEEEEecCCCCE-EEEEeCCCeEEEEeCccccCCCcc---eeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEeeC
Q 011216 271 DVNTVCFGDESGHL-IYSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDI 345 (491)
Q Consensus 271 ~v~~i~~~~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~ 345 (491)
.+..++|+ +++++ ++++..++.|.+||+. .++. +..+.. ...+..++|+|+|++++++. .++.|.+||+
T Consensus 177 ~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~----~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 177 RPFNITFT-PDGNFAFVANLIGNSIGILETQ----NPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp SEEEEEEC-TTSSEEEEEETTTTEEEEEECS----STTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred CccceEEC-CCCCEEEEEeCCCCeEEEEECC----CCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 68999998 67774 4555578999999997 4554 555543 35677899999999776554 5778999999
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccccee-eeeEEEEecCcccCCCcEEEEEec-CCeEE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSH-DSCVY 423 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~ 423 (491)
.+.... .+..+...... .........++|+|++++|++++. ++.|.
T Consensus 251 ~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 298 (331)
T 3u4y_A 251 LSGTLS--------------------------------FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELK 298 (331)
T ss_dssp TTTEEE--------------------------------EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEE
T ss_pred CCCcee--------------------------------eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEE
Confidence 873210 01111111000 000000022368889998876665 56999
Q ss_pred EEECCCccEEEEecCCCCCeeeeEecCCC
Q 011216 424 VYDLVSGEQVAALKYHTSPVRDCSWHPSQ 452 (491)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~v~~~~~s~~~ 452 (491)
+||+.... +..+......-....++|+.
T Consensus 299 v~d~~~~~-~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 299 VFTISGKV-VGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEETTSCE-EEECTTCCCBSCEEECCCC-
T ss_pred EEEecCCc-ccceecccccCCeEEECCcc
Confidence 99996544 33444333322233444443
No 152
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=7.2e-23 Score=210.10 Aligned_cols=282 Identities=12% Similarity=0.095 Sum_probs=189.6
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce---eEEEeEeCCCCceEEEEec---------CCeEEEE
Q 011216 129 VSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASM---------SPIVHIV 196 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~l~~~~~---------dg~i~iw 196 (491)
.++|+|||++++++ .|+.|++||+.++...... ..+.. .+.+++|||||++|++++. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTIL---SNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEE---CHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEE---ccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 67999999665554 6999999999988544322 22221 3889999999999999876 6899999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEE-eccCCCe---
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDV--- 272 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~v--- 272 (491)
|+.+++......+. ..+..++|||||+.|+++. ++.|++||+.+++..... .++...|
T Consensus 96 d~~~g~~~~~~~l~-----------------~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 96 DLSNGEFVRGNELP-----------------RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp ETTTTEECCSSCCC-----------------SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred ECCCCccccceecC-----------------cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 99988762111111 1477899999999999885 789999999888764322 2332222
Q ss_pred --------------EEEEEecCCCCEEEEEeCCC----------------------------------eEEEEeCccccC
Q 011216 273 --------------NTVCFGDESGHLIYSGSDDN----------------------------------LCKVWDRRCLNV 304 (491)
Q Consensus 273 --------------~~i~~~~~~~~~l~s~s~dg----------------------------------~i~iwd~~~~~~ 304 (491)
.+++|+ |+++.|++++.|. .|++||+.
T Consensus 158 ~~~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~---- 232 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT---- 232 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS----
T ss_pred cccceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC----
Confidence 489998 8899999887552 78899986
Q ss_pred CCcce--------eeeccccccEEEEEEcCCCCEEEEeeCC----CcEEEee----CCCCCCccccccCcccceeeceee
Q 011216 305 KGKPA--------GVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWD----IRKMSSNASCNLGFRSYEWDYRWM 368 (491)
Q Consensus 305 ~~~~~--------~~~~~~~~~i~~i~~sp~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~ 368 (491)
.+... ..+.+|...+..++|+||++++++.... ..|.+|| +.+......
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~--------------- 297 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT--------------- 297 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG---------------
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE---------------
Confidence 33321 1234577889999999998877764432 2488888 655321110
Q ss_pred cCCCCcccccCCCCCeeE-EEcccceeeeeEEEEecCcccCCCcEEEE--EecCC--eEEEEECCCccEEEEecCCCCCe
Q 011216 369 DYPPQARDLKHPCDQSVA-TYKGHSVLRTLIRCHFSPVYSTGQKYIYT--GSHDS--CVYVYDLVSGEQVAALKYHTSPV 443 (491)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg--~i~iwd~~~~~~~~~~~~h~~~v 443 (491)
.. ...++...... .....+.|+|||+.|+. ...+| .|++||+.+++ ...+..+...+
T Consensus 298 ----------------~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v 359 (719)
T 1z68_A 298 ----------------QEHIEESRTGWAGG-FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEA 359 (719)
T ss_dssp ----------------GEEEEECSSSCSSS-SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCE
T ss_pred ----------------EecccccCCceEcc-ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEE
Confidence 00 00111110000 00014678899996654 33444 68888887776 45566666678
Q ss_pred eeeEecCCCCeEEEEECC-----CcEEEecCCC
Q 011216 444 RDCSWHPSQPMLVSSSWD-----GDVVRWEFPG 471 (491)
Q Consensus 444 ~~~~~s~~~~~l~s~~~D-----g~i~iw~~~~ 471 (491)
..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 360 ~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 360 INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 888877 88877776665 8899998865
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=4.2e-21 Score=180.01 Aligned_cols=281 Identities=12% Similarity=0.104 Sum_probs=178.6
Q ss_pred CCCEEEEEE----CCCeEEEEECC--CCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC----CeEEEEECCC--Cc
Q 011216 135 DGSLFVAGF----QASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGS--GT 202 (491)
Q Consensus 135 dg~~l~~~~----~dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d----g~i~iwd~~~--~~ 202 (491)
...++++|+ .++.|.+|.++ ++...... .. +...+..++|+|++++|++++.+ +.|.+|++.. ++
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~-~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLS-DA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEE-EE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEee-cc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 334556664 35689999774 44322222 22 34467789999999999999876 7999998865 44
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCeeeEEE---ec-----------
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRI---LA----------- 267 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~---~~----------- 267 (491)
......... +...+..+++ ++++|++++ .++.|.+|++.....+..+ ..
T Consensus 89 ~~~~~~~~~--------------~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 89 LHLLNTQKT--------------MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEEC--------------SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred EEEeeEecc--------------CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 322222111 1114566777 788777776 5789999999754332211 11
Q ss_pred cCCCeEEEEEecCCCCEEEE-EeCCCeEEEEeCccccCC--Cc-c------eeeeccccccEEEEEEcCCCCEEEEee-C
Q 011216 268 HTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNVK--GK-P------AGVLMGHLEGITFIDSRGDGRYLISNG-K 336 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~--~~-~------~~~~~~~~~~i~~i~~sp~~~~l~~~~-~ 336 (491)
+...+.+++|+ ++++++++ ...++.|.+|++...... .+ . ......+...+..++|+|+|+++++++ .
T Consensus 153 ~~~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 231 (361)
T 3scy_A 153 TMPHLHCVRIT-PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI 231 (361)
T ss_dssp SSCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred CCCcceEEEEC-CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence 12345889998 77775554 445889999998622110 01 1 111223445678999999999887776 6
Q ss_pred CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEE
Q 011216 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 416 (491)
++.|.+||+.+... ..+..+....... .....++|+|||++|+++
T Consensus 232 ~~~v~v~~~~~g~~--------------------------------~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~ 276 (361)
T 3scy_A 232 GGTVIAFRYADGML--------------------------------DEIQTVAADTVNA---QGSGDIHLSPDGKYLYAS 276 (361)
T ss_dssp TCEEEEEEEETTEE--------------------------------EEEEEEESCSSCC---CCEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEecCCce--------------------------------EEeEEEecCCCCC---CCcccEEECCCCCEEEEE
Confidence 88999999875211 0111111111000 001244688899999777
Q ss_pred ecC--CeEEEEECC--Ccc--EEEEecCCCCCeeeeEecCCCCeEEEEE-CCCcEEEecCCC
Q 011216 417 SHD--SCVYVYDLV--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 471 (491)
Q Consensus 417 ~~d--g~i~iwd~~--~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~~~ 471 (491)
..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|++..
T Consensus 277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 277 NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 665 899999985 444 4445554 55788999999999888887 678999976653
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=2.1e-21 Score=181.38 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=181.2
Q ss_pred eEEEeEeCCCCceEEEEec-------CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 171 TVTDTSLSPDQRHLVYASM-------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
.+..++|+|+++++++++. ++.|.+||..+++......... .+..++|+|+|++++
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-----------------~~~~~~~s~dg~~l~ 104 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL-----------------KPFGATINNTTQTLW 104 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS-----------------CCCSEEEETTTTEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC-----------------CcceEEECCCCCEEE
Confidence 5788999999998888774 5689999999887655443211 356789999999665
Q ss_pred EE-ecCCeEEEEECCCCeeeEEEeccCCC---------eEEEEEecCCCCEEEEEe--CCCeEEEEeCccccCCCcceee
Q 011216 244 AG-SSDDCIYVYDLEANKLSLRILAHTSD---------VNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGV 311 (491)
Q Consensus 244 ~~-~~dg~i~vwd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~ 311 (491)
++ ..++.|.+||..+++.+..+..+... +.+++|+ ++++.+++++ .++.|.+||.. ..+.+..
T Consensus 105 v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~----~~~~~~~ 179 (353)
T 3vgz_A 105 FGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGG----NIKLKTA 179 (353)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETT----TTEEEEE
T ss_pred EEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCC----CCceEEE
Confidence 55 45799999999999988777654322 7889998 6777666665 57899999997 6666666
Q ss_pred eccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEccc
Q 011216 312 LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 391 (491)
Q Consensus 312 ~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (491)
+..+...+..++|+|+++++++++.++.|.+||+.+.. .+..+...
T Consensus 180 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~----------------------------------~~~~~~~~ 225 (353)
T 3vgz_A 180 IQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK----------------------------------ILSRKKLL 225 (353)
T ss_dssp ECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE----------------------------------EEEEEECC
T ss_pred ecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe----------------------------------EEEEEEcC
Confidence 66555667889999999999999999999999998732 22222211
Q ss_pred ceeeeeEEEEecCcccCCCcEEEEEec-CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEE-CCCcEEEecC
Q 011216 392 SVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF 469 (491)
Q Consensus 392 ~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~ 469 (491)
... .......++++|+++++++++. ++.|.+||+.+++.+..+..+. ...++|+|++++|++++ .++.|.+||+
T Consensus 226 ~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 226 DDG--KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CSS--SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCC--CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 100 0011123467789998877765 4899999999999888887543 36799999999666555 6899999998
Q ss_pred CCCC
Q 011216 470 PGNG 473 (491)
Q Consensus 470 ~~~~ 473 (491)
.++.
T Consensus 302 ~~~~ 305 (353)
T 3vgz_A 302 KSYK 305 (353)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7764
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=1.2e-20 Score=175.89 Aligned_cols=266 Identities=14% Similarity=0.143 Sum_probs=167.8
Q ss_pred CCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEEC
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDV 198 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~ 198 (491)
+......++|+|||+ |++++. ++.|.+|++.++.. ........+...+..++|+|++++|++++ .++.|.+|++
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 445667899999999 555443 68999999977642 22222223344688899999999999888 6789999999
Q ss_pred CC-CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC-CCeeeE--EEec-cCCCeE
Q 011216 199 GS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSL--RILA-HTSDVN 273 (491)
Q Consensus 199 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~--~~~~-~~~~v~ 273 (491)
.. +.............+ +. ...+...+.+++|+|+|+.+++...++.|.+|++. +++... .+.. ....+.
T Consensus 116 ~~~g~~~~~~~~~~~~~~----p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHG----PR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp CTTSCEEEEEEEECCCCC----SS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred CCCCCeeecceeecCCCC----CC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 53 333222221110000 00 11122358899999999966666678899999998 454322 2222 233678
Q ss_pred EEEEecCCCCEEE-EEeCCCeEEEEeCccccCCCcceeeecccc------ccEEEEEEcCCCCEEE-EeeCCCcEEEeeC
Q 011216 274 TVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHL------EGITFIDSRGDGRYLI-SNGKDQAIKLWDI 345 (491)
Q Consensus 274 ~i~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~i~~i~~sp~~~~l~-~~~~dg~i~iwd~ 345 (491)
.++|+ +++++++ +...++.|.+|++.........+..+.... ..+..++|+|||++|+ +...++.|.+|++
T Consensus 191 ~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~ 269 (347)
T 3hfq_A 191 HLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAV 269 (347)
T ss_dssp EEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred eEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 89998 6777554 466789999999862110111122222222 3488899999999874 5566899999998
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-CeEEE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-SCVYV 424 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g~i~i 424 (491)
..... ...+..+..+.. ....++|+|||++|++++.+ +.|.+
T Consensus 270 ~~~g~-------------------------------~~~~~~~~~~~~------~~~~~~~spdg~~l~v~~~~~~~v~v 312 (347)
T 3hfq_A 270 TADGH-------------------------------LTLIQQISTEGD------FPRDFDLDPTEAFVVVVNQNTDNATL 312 (347)
T ss_dssp CGGGC-------------------------------EEEEEEEECSSS------CCCEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCc-------------------------------EEEeEEEecCCC------CcCeEEECCCCCEEEEEEcCCCcEEE
Confidence 73110 012222222110 11234678899999888765 89999
Q ss_pred E--ECCCccEE
Q 011216 425 Y--DLVSGEQV 433 (491)
Q Consensus 425 w--d~~~~~~~ 433 (491)
| |..+++..
T Consensus 313 ~~~d~~tg~l~ 323 (347)
T 3hfq_A 313 YARDLTSGKLS 323 (347)
T ss_dssp EEECTTTCCEE
T ss_pred EEEeCCCCeEE
Confidence 9 55566654
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.88 E-value=2.1e-19 Score=168.36 Aligned_cols=281 Identities=12% Similarity=0.138 Sum_probs=178.7
Q ss_pred CCCceEEEEEcCCCCEEEEEECC----CeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEE
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQA----SQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 196 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~d----g~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iw 196 (491)
+......++|+|||++|++++.+ +.|.+|++... ..+........+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677789999999999998875 79999998752 233333232333345777888 888787776 57899999
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCee------e-------
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKL------S------- 262 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~~------~------- 262 (491)
++................+.. ......+...+.+++|+|+|++|++++ .++.|.+|++..... +
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSG--PDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCC--SCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCC--CCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 997544322221111111100 001112233578899999999776655 478999999875431 1
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEe-CCCeEEEEeCccccCCCcc--eeee---ccccccEEEEEEcCCCCEEEEeeC
Q 011216 263 LRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVL---MGHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~--~~~~---~~~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
.....+...+..++|+ ++++++++++ .++.|.+||+. .+.. +..+ ..+......++|+|||++|+++..
T Consensus 204 ~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~~----~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 204 AFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAFRYA----DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEEEEE----TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred ceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEEEec----CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 1122445667899998 7888776666 68999999986 3322 2222 233345789999999999877665
Q ss_pred C--CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEE
Q 011216 337 D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 337 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
+ +.|.+|++....... ..+..+... . ....++|+|+|++|+
T Consensus 279 ~~~~~i~v~~~~~~~g~~------------------------------~~~~~~~~g---~----~~~~~~~spdg~~l~ 321 (361)
T 3scy_A 279 LKADGVAIFKVDETNGTL------------------------------TKVGYQLTG---I----HPRNFIITPNGKYLL 321 (361)
T ss_dssp SSSCEEEEEEECTTTCCE------------------------------EEEEEEECS---S----CCCEEEECTTSCEEE
T ss_pred CCCCEEEEEEEcCCCCcE------------------------------EEeeEecCC---C----CCceEEECCCCCEEE
Confidence 4 889999986311000 112222210 0 112346888999998
Q ss_pred EEe-cCCeEEEE--ECCCccEEEEec-CCCCCeeeeEec
Q 011216 415 TGS-HDSCVYVY--DLVSGEQVAALK-YHTSPVRDCSWH 449 (491)
Q Consensus 415 ~g~-~dg~i~iw--d~~~~~~~~~~~-~h~~~v~~~~~s 449 (491)
+++ .++.|.+| |..+++...... .+...+.|+.|.
T Consensus 322 ~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 322 VACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 888 57889996 555677654432 344578888885
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=1.4e-21 Score=195.48 Aligned_cols=234 Identities=11% Similarity=0.065 Sum_probs=168.4
Q ss_pred ceeEEEeEeCCCCceEEEEec-CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec
Q 011216 169 RWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (491)
Q Consensus 169 ~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~ 247 (491)
..+|.+++|+|||+.|++++. ||+++||++.+++...+.. .+...+..++|+|| +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----------------~~~~~~~~~~~spd-~~l~~~~~ 83 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----------------EPINSVLDPHYGVG-RVILVRDV 83 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----------------SCCSEECEECTTCS-EEEEEEEC
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----------------ccccccccccCCCC-eEEEEecc
Confidence 347999999999999999887 9999999987665543322 11236889999999 77776664
Q ss_pred ---CCeEEEEECCC--CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 248 ---DDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 248 ---dg~i~vwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
+....+|.+.. ......+.. ...+...+|+|.....+++.+.++.+.+||+. .++... +..+.. .++
T Consensus 84 ~~g~~~~~l~~~~~~~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~----~g~~~~-l~~~~~--~~~ 155 (582)
T 3o4h_A 84 SKGAEQHALFKVNTSRPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALD----GGGLRE-LARLPG--FGF 155 (582)
T ss_dssp STTSCCEEEEEEETTSTTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEE----TTEEEE-EEEESS--CEE
T ss_pred CCCCcceEEEEEeccCCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEcc----CCcEEE-eecCCC--ceE
Confidence 44455554432 211223322 23345668874444455555555556699986 444333 333333 789
Q ss_pred EEcCCCCEEEEeeCC----CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 323 DSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 323 ~~sp~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
+|+|||++|++++.+ +.|++||+.+. ....+..+..
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g-----------------------------------~~~~l~~~~~----- 195 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-----------------------------------GLRVFDSGEG----- 195 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTC-----------------------------------CCEEECCSSC-----
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCC-----------------------------------CceEeecCCC-----
Confidence 999999999988777 77999998873 2334444431
Q ss_pred EEEecCcccCCCcEEEEEecCC--eEEEEECCCccEEEEecCCCCCeeeeE--------ecCCCCeEEEEECCCcEEEec
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCS--------WHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~--------~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
....++|||||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||.++++++.||.+++|+
T Consensus 196 -~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 196 -SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp -EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred -ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEE
Confidence 225678999999999888888 8999999999888 7788888888888 999999999999999999999
Q ss_pred C
Q 011216 469 F 469 (491)
Q Consensus 469 ~ 469 (491)
+
T Consensus 274 ~ 274 (582)
T 3o4h_A 274 D 274 (582)
T ss_dssp T
T ss_pred E
Confidence 9
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=6.1e-21 Score=176.93 Aligned_cols=247 Identities=14% Similarity=0.059 Sum_probs=174.5
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeeccC--CceeEEEeEeCCCCceEEEEe------------cC
Q 011216 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYAS------------MS 190 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~------------~d 190 (491)
.+..++|+|||++++ ++..++.|.+||+.+++.+........ +...+..++|+|++++|+++. .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 467899999998765 455678999999998866554332210 122467899999999998886 57
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
+.|.+||+.+++........ ..+.+++|+|++++|+++ ++.|++||+.+++....+..+..
T Consensus 115 ~~i~v~d~~~~~~~~~~~~~-----------------~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEAP-----------------RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp CEEEEEETTTTEEEEEEECC-----------------SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred ceEEEEECCCCcEEEEEeCC-----------------CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 99999999887654333211 146678999999988887 68899999999988776654431
Q ss_pred CeEEEEEecCCCCEEEEEe-CCC-----------------------eEEEEeCccccCCCcce-eeeccccccEEEEEEc
Q 011216 271 DVNTVCFGDESGHLIYSGS-DDN-----------------------LCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSR 325 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s-~dg-----------------------~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~i~~s 325 (491)
...+.|+ +++..++..+ .++ .|.+||+. .++.. ..+..+...+..++|+
T Consensus 176 -~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~----~~~~~~~~~~~~~~~~~~~~~s 249 (337)
T 1pby_B 176 -EAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----TGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp -TTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----TCCEEEEEEEECSSCEEEEEEC
T ss_pred -CCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCC----CCCceEeecCCCCCceeeEEEC
Confidence 1123676 5555444333 333 46899987 33332 2334455678899999
Q ss_pred CCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCc
Q 011216 326 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 405 (491)
Q Consensus 326 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (491)
|++++++++ ++.|.+||+.+. +.+..+..... ...++
T Consensus 250 ~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~-------~~~~~ 286 (337)
T 1pby_B 250 PAKTRAFGA--YNVLESFDLEKN----------------------------------ASIKRVPLPHS-------YYSVN 286 (337)
T ss_dssp TTSSEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC-------CCEEE
T ss_pred CCCCEEEEe--CCeEEEEECCCC----------------------------------cCcceecCCCc-------eeeEE
Confidence 999999888 689999999763 22333322211 12346
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC
Q 011216 406 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 440 (491)
Q Consensus 406 ~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~ 440 (491)
|+|+|++|++++.++.|++||+.+++.+..+..+.
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 78899999999999999999999999988886543
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.88 E-value=2e-20 Score=175.46 Aligned_cols=288 Identities=13% Similarity=0.090 Sum_probs=179.8
Q ss_pred EEEEEECC--CeEEEEEC--CCCeEEEEEeec-cCCceeEEEeEeCCCCceEEEEecCCeEEEEECC-CCccccccceec
Q 011216 138 LFVAGFQA--SQIRIYDV--ERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG-SGTMESLANVTE 211 (491)
Q Consensus 138 ~l~~~~~d--g~i~vw~~--~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~ 211 (491)
+|++|+.. +.|.+|++ .++.. ...... ......+..++|+|++++|++++.+ .|.+|++. +++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l-~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTC-KLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEE-EEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCE-EEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 35555543 56887765 45532 222111 1222357789999999999998887 99999997 665432221110
Q ss_pred cccccccccCCCCCceecEEEEEEcCCCCE--EEEEe-------------cCCeEEEEECC-CCeeeEEEe----ccCCC
Q 011216 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGS-------------SDDCIYVYDLE-ANKLSLRIL----AHTSD 271 (491)
Q Consensus 212 ~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~--l~~~~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~ 271 (491)
. + .+.+++|+|+|++ +++++ .+|.+.+|++. .++....+. .+...
T Consensus 82 --~----------g---~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~ 146 (365)
T 1jof_A 82 --G----------G---HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG 146 (365)
T ss_dssp --C----------S---SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC
T ss_pred --C----------C---CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc
Confidence 0 0 1234789999984 44553 68999999997 455543333 24567
Q ss_pred eEEEEEecCCCCEEEEEe-CCCeEEEEeCccccCCCcc--eeeec--cccccEEEEEEcCCCCEEEEeeC-CCcEEEeeC
Q 011216 272 VNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKP--AGVLM--GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDI 345 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~--~~~~~--~~~~~i~~i~~sp~~~~l~~~~~-dg~i~iwd~ 345 (491)
+.+++|+ +++++++++. .++.|.+||+.. .++. +..+. .|...+..++|+|+|++|++++. ++.|.+|++
T Consensus 147 ~~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~---~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 147 IHGMVFD-PTETYLYSADLTANKLWTHRKLA---SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp EEEEEEC-TTSSEEEEEETTTTEEEEEEECT---TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEC-CCCCEEEEEcCCCCEEEEEEECC---CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence 9999998 7888777765 468999999851 1222 22232 23566899999999999887765 688999987
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc----ccceeeeeEEEEecCc-ccCCCcEEEEEecCC
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK----GHSVLRTLIRCHFSPV-YSTGQKYIYTGSHDS 420 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~s~~~~~l~~g~~dg 420 (491)
......... .. +.+..+. ++....+.......++ |+|||++|++++.+.
T Consensus 223 ~~~~g~~~~---------~~-----------------~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 223 DPATHMPVY---------TH-----------------HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp CTTTCCEEE---------EE-----------------EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred eCCCCcEEE---------cc-----------------ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 531100000 00 0000000 0000000000123446 788999988876532
Q ss_pred ------eEEEEECC-CccEEE---EecCCCCCeeeeEecC---CCCeEEEEECC-CcEEEecCCCC
Q 011216 421 ------CVYVYDLV-SGEQVA---ALKYHTSPVRDCSWHP---SQPMLVSSSWD-GDVVRWEFPGN 472 (491)
Q Consensus 421 ------~i~iwd~~-~~~~~~---~~~~h~~~v~~~~~s~---~~~~l~s~~~D-g~i~iw~~~~~ 472 (491)
.|.+|++. +++... .+..+...+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 566543 2334555678899999 89999998864 89999998764
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=198.11 Aligned_cols=289 Identities=11% Similarity=0.019 Sum_probs=185.2
Q ss_pred ceEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEE
Q 011216 126 RAYVSQFSADGSLFVAGFQ---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iw 196 (491)
.+.+++|||||++|++++. ++.|++||+.+++.+... . ....+..++|||||+.|+++. ++.|++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~---l~~~~~~~~~SPDG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-E---LPRPIQYLCWSPVGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-C---CCSSBCCEEECSSTTCEEEEE-TTEEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-e---cCcccccceECCCCCEEEEEE-CCeEEEE
Confidence 3889999999999998876 789999999988441101 1 113588899999999999986 7899999
Q ss_pred ECCCCccccccceeccccccccccCCCCCcee---------cEEEEEEcCCCCEEEEEecCC------------------
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF---------GIFSLKFSTDGRELVAGSSDD------------------ 249 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~i~~s~~~~~l~~~~~dg------------------ 249 (491)
++.+++...+..... ....+ .||.. ...+++|+|||++|++++.|.
T Consensus 136 ~~~~g~~~~l~~~~~--~~~v~-----~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~ 208 (719)
T 1z68_A 136 QRPGDPPFQITFNGR--ENKIF-----NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPR 208 (719)
T ss_dssp SSTTSCCEECCCCCB--TTTEE-----ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCE
T ss_pred eCCCCCcEEEecCCC--cCCeE-----cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcc
Confidence 998887644321110 00000 01111 124799999999999987652
Q ss_pred ----------------eEEEEECCCCeee--EE------EeccCCCeEEEEEecCCCCEEEEEeCC----CeEEEEe---
Q 011216 250 ----------------CIYVYDLEANKLS--LR------ILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWD--- 298 (491)
Q Consensus 250 ----------------~i~vwd~~~~~~~--~~------~~~~~~~v~~i~~~~~~~~~l~s~s~d----g~i~iwd--- 298 (491)
.|++||+.+++.. .. +.+|...+..++|+ ++++++++.... ..|.+||
T Consensus 209 ~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 209 TINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWV-TDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp EEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEES-SSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred ceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEe-CCCeEEEEEeccccCeEEEEEEcccC
Confidence 7899999988753 11 23577889999999 567777764432 2488889
Q ss_pred -CccccCCCcceeee----ccccccEE-----EEEEcCCCCEEEE--eeCCC--cEEEeeCCCCCCccccccCcccceee
Q 011216 299 -RRCLNVKGKPAGVL----MGHLEGIT-----FIDSRGDGRYLIS--NGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 299 -~~~~~~~~~~~~~~----~~~~~~i~-----~i~~sp~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
+. .++....+ .+|...+. .+.|+|||+.|+. ...+| .|.+||+.+..
T Consensus 288 ~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--------------- 348 (719)
T 1z68_A 288 DWQ----TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--------------- 348 (719)
T ss_dssp SSS----SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT---------------
T ss_pred CCC----CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc---------------
Confidence 65 33333333 35555565 7899999996654 44555 46677765522
Q ss_pred ceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-----CeEEEEECCC--cc-EEEEe
Q 011216 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVS--GE-QVAAL 436 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~--~~-~~~~~ 436 (491)
...+..+... +.. +.++ +++.|+..+.+ +.+++|.+.. +. ....+
T Consensus 349 --------------------~~~lt~~~~~--v~~----~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l 401 (719)
T 1z68_A 349 --------------------AIQITSGKWE--AIN----IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCV 401 (719)
T ss_dssp --------------------CEECSCSSSC--EEE----EEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEES
T ss_pred --------------------eEecccCceE--EEE----EEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceec
Confidence 1222221110 111 1223 55555555544 7788887653 42 23344
Q ss_pred c----CCCCCeeeeEecCCCCeEEEE-ECC--CcEEEecCCCCC
Q 011216 437 K----YHTSPVRDCSWHPSQPMLVSS-SWD--GDVVRWEFPGNG 473 (491)
Q Consensus 437 ~----~h~~~v~~~~~s~~~~~l~s~-~~D--g~i~iw~~~~~~ 473 (491)
. +|...+..+.|+|++++|+.. +.+ ..+.+|++.+++
T Consensus 402 ~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 402 TCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp STTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred cCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 3 256678899999999977743 333 468899886654
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=9.7e-21 Score=181.03 Aligned_cols=170 Identities=11% Similarity=0.028 Sum_probs=127.0
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE----EEe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV----AGS 246 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~----~~~ 246 (491)
.++.+++++++.++++++.++ +++|+........... ................+...|.+++|+|++++|+ +++
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG-DDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT-CCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc-cCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 578899999999999998887 8888753211000000 0000000000000012345799999999999999 788
Q ss_pred cCCeEEEEECCCC--------ee---eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc
Q 011216 247 SDDCIYVYDLEAN--------KL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 315 (491)
Q Consensus 247 ~dg~i~vwd~~~~--------~~---~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 315 (491)
.|+.|++||+.++ +. ...+.+|...|.+++|+|.++++|++++.||+|++||++ .........+|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~----~~~~~~~~~~~ 191 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT----ETVKVCATLPS 191 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES----SSEEEEEEECG
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC----CCcceeeccCC
Confidence 8999999998654 22 344557999999999996558999999999999999998 55555566678
Q ss_pred cccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 316 ~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
...|.+++|+|+|++|++|+.||.|++||++
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 8999999999999999999999999999987
No 162
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=1.9e-20 Score=177.81 Aligned_cols=291 Identities=13% Similarity=0.042 Sum_probs=182.9
Q ss_pred ceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 126 RAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
.+..++|||||++|+..... ..|.+||+.+++... . ..........+.|+|||++|++++.++.|.+||+.+++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l--~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-L--TEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-C--CCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-e--ecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 36778999999998877543 478999998874322 2 12222222337899999999999999999999999887
Q ss_pred cccccceeccc--cc--cccccCCCCCceecEEEEEEcCCCCEEEEE-----ecCCeEEEEECCCCeeeEEEeccCCCeE
Q 011216 203 MESLANVTEIH--DG--LDFSAADDGGYSFGIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTSDVN 273 (491)
Q Consensus 203 ~~~~~~~~~~~--~~--~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 273 (491)
...+....... .+ +.+.... ..-......+.|+|+++.++.+ ..+..|++||+.+++..... .+...+.
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~-~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~ 191 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCT-KLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLG 191 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEE
T ss_pred cEEEEecccccCCCCCEEEeccCC-ccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccc
Confidence 54433321100 00 0000000 0000000013567888877654 35678999999988764443 6677899
Q ss_pred EEEEecCCCCEEEEEeCC------CeEEEEeCccccCCCcceeeeccc--cccEEEEEEcCCCCEEEEeeCC-----CcE
Q 011216 274 TVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKD-----QAI 340 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~i~~sp~~~~l~~~~~d-----g~i 340 (491)
.+.|+|.++..|+..+.+ ..|.+||+. ... ...+..+ ...+..++|+|+|++|+..+.+ +.|
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~----~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED----GSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETT----SCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECC----CCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 999994367766665543 358888874 222 2233322 2357889999999988776544 449
Q ss_pred EEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC-CCcEEEEEe--
Q 011216 341 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGS-- 417 (491)
Q Consensus 341 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~-- 417 (491)
.+||+.+.. ...+..... .. +.|+| ||+++++++
T Consensus 267 ~~~d~~~g~-----------------------------------~~~l~~~~~----~~----~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 267 YKANPETLE-----------------------------------NEEVMVMPP----CS----HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp EEECTTTCC-----------------------------------EEEEEECCS----EE----EEEECSSSSEEEEEECC
T ss_pred EEEECCCCC-----------------------------------eEEeeeCCC----CC----CCccCCCCceEEEecCC
Confidence 999987632 111111110 01 46788 999888764
Q ss_pred --------------cCCeEEEEECCCccEEEEecCCCC-----------CeeeeEecCCCCeEEEEEC-CCcEEEecCC
Q 011216 418 --------------HDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQPMLVSSSW-DGDVVRWEFP 470 (491)
Q Consensus 418 --------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~v~~~~~s~~~~~l~s~~~-Dg~i~iw~~~ 470 (491)
.++.|++||+.+++.. .+..+.. .+..++|+|||+.|+.++. ++...+|.+.
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 3478999999887653 3444443 2677899999998887764 5666666554
No 163
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.86 E-value=5.4e-20 Score=188.79 Aligned_cols=285 Identities=9% Similarity=0.065 Sum_probs=184.7
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCC-ce--eEEEeEeCCCCceEEEEecC---------Ce
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RW--TVTDTSLSPDQRHLVYASMS---------PI 192 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~--~v~~l~~sp~~~~l~~~~~d---------g~ 192 (491)
.....++|+|||++|+++ |+.|++||+.++..... +..+.. .. ...+++|||||++|++++.+ +.
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 345679999999999886 89999999999865432 221111 11 22457899999999998876 56
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEE-eccCCC
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSD 271 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~ 271 (491)
+.+||+.+++...+.. |...+...+|||||+.|+.+. ++.|++||+.+++..+.. .++...
T Consensus 94 ~~~~d~~~~~~~~l~~-----------------~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~ 155 (740)
T 4a5s_A 94 YDIYDLNKRQLITEER-----------------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI 155 (740)
T ss_dssp EEEEETTTTEECCSSC-----------------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT
T ss_pred EEEEECCCCcEEEccc-----------------CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc
Confidence 7799999987654322 233689999999999998884 689999999887754321 133222
Q ss_pred e-----------------EEEEEecCCCCEEEEEeCCC-eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEE
Q 011216 272 V-----------------NTVCFGDESGHLIYSGSDDN-LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 333 (491)
Q Consensus 272 v-----------------~~i~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~ 333 (491)
+ ..+.|| |+++.|+.++.|. .+.+|++....... .+...+..+.+.+.|..
T Consensus 156 ~~~g~~~~v~~ee~~~~~~~~~wS-pDg~~la~~~~d~~~v~~~~~~~~~~~~-------~~~~~~~~~~yp~~G~~--- 224 (740)
T 4a5s_A 156 IYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDES-------LQYPKTVRVPYPKAGAV--- 224 (740)
T ss_dssp EEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTT-------CSSCEEEEEECCBTTSC---
T ss_pred eecCcccccccchhcCCCcceEEC-CCCCEEEEEEEcccCCceEEEEeecCCC-------CCCCcceeecCCCCcCc---
Confidence 2 358998 7888888877554 48888874221110 34455677788777643
Q ss_pred eeCCCcEEEeeCCC---CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC
Q 011216 334 NGKDQAIKLWDIRK---MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 410 (491)
Q Consensus 334 ~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 410 (491)
.....|++||+.+ .... ....+...............++|||||
T Consensus 225 -~~~~~l~v~d~~~~~~~~~~--------------------------------~~~~l~~~~~~~~~~~~~~~~~wspdg 271 (740)
T 4a5s_A 225 -NPTVKFFVVNTDSLSSVTNA--------------------------------TSIQITAPASMLIGDHYLCDVTWATQE 271 (740)
T ss_dssp -CCEEEEEEEETTSCCSSSCC--------------------------------CEEEECCCHHHHTSCEEEEEEEEEETT
T ss_pred -CCeeEEEEEECCCCCCCCcc--------------------------------eEEEecCCccCCCCCeEEEEEEEeCCC
Confidence 1223689999986 4210 111121100000011223456788899
Q ss_pred cEEEEEec----CCeEEEEECCCcc----EE--EEe--cCCCCCee-----eeEecCCCCeEE-EEE-CCC--cEEEecC
Q 011216 411 KYIYTGSH----DSCVYVYDLVSGE----QV--AAL--KYHTSPVR-----DCSWHPSQPMLV-SSS-WDG--DVVRWEF 469 (491)
Q Consensus 411 ~~l~~g~~----dg~i~iwd~~~~~----~~--~~~--~~h~~~v~-----~~~~s~~~~~l~-s~~-~Dg--~i~iw~~ 469 (491)
++++.... +..|++||+.+++ +. ..+ ..|...|. .++|+|||+.|+ ..+ .+| .|++|++
T Consensus 272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 97776543 2379999999887 22 112 34665554 789999999777 665 344 5777887
Q ss_pred CCCCC
Q 011216 470 PGNGE 474 (491)
Q Consensus 470 ~~~~~ 474 (491)
.++..
T Consensus 352 ~~~~~ 356 (740)
T 4a5s_A 352 DKKDC 356 (740)
T ss_dssp TCSSC
T ss_pred CCCce
Confidence 76543
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=7.5e-19 Score=163.95 Aligned_cols=282 Identities=12% Similarity=0.026 Sum_probs=187.2
Q ss_pred CCCEEEEEE------CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec----------CCeEEEEEC
Q 011216 135 DGSLFVAGF------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----------SPIVHIVDV 198 (491)
Q Consensus 135 dg~~l~~~~------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~----------dg~i~iwd~ 198 (491)
+++++.+.. .|+.|.+||..+++.+.... ....+ .++|+||+++|+++.. ++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~---~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVP---TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEE---CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEec---CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 455555543 36799999999886654432 22333 8999999999998863 568999999
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeEE-EeccCCCeEEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDVNTV 275 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v~~i 275 (491)
.+.+............ .+......++++|||++|+++.. ++.|.+||+.+++.+.. +. ... ...+
T Consensus 89 ~t~~~~~~i~~~~~~~----------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v 156 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRV----------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSV 156 (361)
T ss_dssp TTCCEEEEEEECTTBC----------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEE
T ss_pred cCCcEEEEEEcCcccc----------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-ccee
Confidence 8877655443321100 01113456899999999998874 57899999999988776 43 322 2334
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCccee------eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG------VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 349 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~ 349 (491)
.+.|.....+++.+.||.+.+|+... .++... .+.....++ .+.++|++..++..+.++.+.++|+....
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~---~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~ 232 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGE---DGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE 232 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECT---TSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECC---CCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC
Confidence 55555557888999999999998751 122221 111222222 33346677777777888999999986522
Q ss_pred CccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccc----eeeeeEEEEecCcccCCCcEEEEEec-------
Q 011216 350 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSH------- 418 (491)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~g~~------- 418 (491)
.. .+..+.... ............+++|+++.++++..
T Consensus 233 ~~--------------------------------~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 233 VK--------------------------------VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp CE--------------------------------EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred ce--------------------------------ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 10 011111000 00000000011256778888887654
Q ss_pred ----CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 419 ----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 419 ----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.+.|.+||+.+++.+..+..+. +.+++|+|||++|++++. +.|.+||..++
T Consensus 281 ~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3489999999999999998776 899999999999998887 99999999887
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=1e-17 Score=156.93 Aligned_cols=249 Identities=10% Similarity=0.069 Sum_probs=163.4
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEeeccCCceeEEEeEeCCCCce--EEEEe-------------
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYAS------------- 188 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~~~~v~~l~~sp~~~~--l~~~~------------- 188 (491)
..+..++|+|||++|++++.+ .|.+|++. ++...... ..... +.+..++|+|+|++ ++++.
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 457789999999999998888 99999997 67443221 11111 12456899999995 44443
Q ss_pred cCCeEEEEECC-CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECC-CCeee--E
Q 011216 189 MSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLE-ANKLS--L 263 (491)
Q Consensus 189 ~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~-~~~~~--~ 263 (491)
.++.+.+|++. +++.......... .+...+.+++|+|||++|+++.. ++.|++||+. +++.. .
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~ 184 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEY------------QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG 184 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEEC------------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEe------------CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEee
Confidence 68999999997 3544322111100 01226889999999998887764 6799999998 66643 2
Q ss_pred EEe--ccCCCeEEEEEecCCCCEEEEEeC-CCeEEEEeCccccCCCcc------eeeec----cccc------cEEEEE-
Q 011216 264 RIL--AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKP------AGVLM----GHLE------GITFID- 323 (491)
Q Consensus 264 ~~~--~~~~~v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~------~~~~~----~~~~------~i~~i~- 323 (491)
.+. .|...+..++|+ ++++++++++. ++.|.+|++... .++. +..+. +|.. .+..++
T Consensus 185 ~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~--~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPA--THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCC--CCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence 232 245678999998 78888877764 789999987521 2222 11121 2222 588999
Q ss_pred EcCCCCEEEEeeCCC------cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeE---EEccccee
Q 011216 324 SRGDGRYLISNGKDQ------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA---TYKGHSVL 394 (491)
Q Consensus 324 ~sp~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 394 (491)
|+|||++|+++..+. .|.+|++.... .... ....+.
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g---------------------------------~~~~~~~~~~~~~-- 306 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCG---------------------------------SIEKQLFLSPTPT-- 306 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTS---------------------------------CEEEEEEEEECSS--
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCC---------------------------------CEEEeeeeeecCC--
Confidence 999999988765432 79999986310 1111 011111
Q ss_pred eeeEEEEecCcccC---CCcEEEEEecC-CeEEEEECCCc
Q 011216 395 RTLIRCHFSPVYST---GQKYIYTGSHD-SCVYVYDLVSG 430 (491)
Q Consensus 395 ~~~~~~~~~~~~s~---~~~~l~~g~~d-g~i~iwd~~~~ 430 (491)
......+|+| ||++|++++.+ +.|.+|++...
T Consensus 307 ----~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 307 ----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ----CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 0012346788 89999999875 89999998665
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=4.1e-18 Score=158.67 Aligned_cols=240 Identities=11% Similarity=0.093 Sum_probs=161.7
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeeccCC---ceeEEEeEeCCCCceEEEEecC-----------
Q 011216 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQRHLVYASMS----------- 190 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~~~~~d----------- 190 (491)
.+..++|+|||++++ ++..++.|.+||+.+++........... ...+..++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 467899999998665 4456899999999988655443321110 2347789999999999998865
Q ss_pred -CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC
Q 011216 191 -PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 191 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
+.|.+||+.+++......... +...+.+++|+|+|+ +++++. .|++||+.+++....+..+.
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~ 186 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP--------------MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRN 186 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE--------------CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTT
T ss_pred CCeEEEEECCCccccceeeecc--------------CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccc
Confidence 899999998765433322211 111577889999999 666543 49999999988777664332
Q ss_pred C------------------------CeEEEEEecCCCC-----------EEEEEeCCCeEEEEeCccccCCCcceeeecc
Q 011216 270 S------------------------DVNTVCFGDESGH-----------LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG 314 (491)
Q Consensus 270 ~------------------------~v~~i~~~~~~~~-----------~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 314 (491)
. ....++++ +++. ++.....++.+.+|++. .
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 252 (349)
T 1jmx_B 187 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-------------D 252 (349)
T ss_dssp CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEEEEEEEEEETTTCCEEEEEEE-------------E
T ss_pred cCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCccccccceeEEEEeccCCcEEecccc-------------c
Confidence 0 23345554 2211 11122333444444432 2
Q ss_pred ccccEEEEEEcC-CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce
Q 011216 315 HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 315 ~~~~i~~i~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
+...+..++++| ++++++++ ++.|.+||+.+. +.+..+.....
T Consensus 253 ~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~----------------------------------~~~~~~~~~~~ 296 (349)
T 1jmx_B 253 LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR----------------------------------KLIKAANLDHT 296 (349)
T ss_dssp CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT----------------------------------EEEEEEECSSC
T ss_pred CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC----------------------------------eEEEEEcCCCC
Confidence 445678999999 99999888 889999999873 22333322111
Q ss_pred eeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC
Q 011216 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 439 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 439 (491)
...++|+|++++|++++.++.|++||+.+++.+..+...
T Consensus 297 -------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 -------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -------CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred -------ccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 123467889998988888999999999999998888654
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=7.4e-18 Score=155.47 Aligned_cols=246 Identities=13% Similarity=0.154 Sum_probs=176.1
Q ss_pred eeEEEeEeCCCCceEEEEecC------------------------CeEEEEECCCCccccccceeccccccccccCCCCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMS------------------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (491)
+.+.+++++|+|+++++...+ +.|.+||..+++....... +
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------~ 88 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------------N 88 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT---------------T
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC---------------C
Confidence 368999999999988887766 4799999988876432210 1
Q ss_pred ceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-eeEEE---------eccCCCeEEEEEecCCCCEEEEEe-CCCeE
Q 011216 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---------LAHTSDVNTVCFGDESGHLIYSGS-DDNLC 294 (491)
Q Consensus 226 h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~i~~~~~~~~~l~s~s-~dg~i 294 (491)
+-..+..++++++|+++++...++.|++||..... .+..+ ..+......++++|.+++++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 22267899999999988888889999999986553 44444 234446899999844788888886 68999
Q ss_pred EEEeCccccCCCcceeeecc----------ccccEEEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccccCccccee
Q 011216 295 KVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~----------~~~~i~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
++||. .+..+..+.. +......|+++|+ +.++++...++.|++||..+.
T Consensus 169 ~~~~~-----~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--------------- 228 (329)
T 3fvz_A 169 VQFSP-----SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--------------- 228 (329)
T ss_dssp EEECT-----TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------------
T ss_pred EEEcC-----CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------------
Confidence 99995 4555555532 3344889999998 777777778899999998752
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC------CCcEEEEEecCCeEEEEECCCccEEEEec
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST------GQKYIYTGSHDSCVYVYDLVSGEQVAALK 437 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 437 (491)
+.+..+......... +..+++| +|+..++...+..|++||..+++.+..+.
T Consensus 229 -------------------~~~~~~~~~~~~~~~----~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~ 285 (329)
T 3fvz_A 229 -------------------EFVREIKHASFGRNV----FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK 285 (329)
T ss_dssp -------------------CEEEEECCTTTTTCE----EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred -------------------cEEEEEeccccCCCc----ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence 333333221111111 1223334 34433334445689999999999998873
Q ss_pred ---CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 438 ---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 438 ---~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+...+..++++|+|.++++...++.|++|++....
T Consensus 286 ~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 667779999999999888888889999999987643
No 168
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.81 E-value=2.3e-18 Score=174.98 Aligned_cols=299 Identities=12% Similarity=0.030 Sum_probs=189.9
Q ss_pred ccccCCCCceEEEEEcCCCCEEEEE--ECCCeEEEEECCCCeEEEEEeeccCCceeEE---------EeEeC--CCCce-
Q 011216 118 WPVDQTTSRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQKDILAKSLRWTVT---------DTSLS--PDQRH- 183 (491)
Q Consensus 118 ~~~~~h~~~v~~~~~s~dg~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~---------~l~~s--p~~~~- 183 (491)
..+.+|...+..++|++++-+++.. +.++...||....+.....+ ..+...+. ...|+ |||+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA---LPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES---SCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee---CCCCccccccccccCCccceeeeecCCCeE
Confidence 3566789999999999887666666 45788999986444333322 22323344 45454 99998
Q ss_pred EEEEec-CCeEEEEECC--C-CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC----------C
Q 011216 184 LVYASM-SPIVHIVDVG--S-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----------D 249 (491)
Q Consensus 184 l~~~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d----------g 249 (491)
|+.++. +..|.++++. + +....+.... ...|...+.+++|+|||+.|++++.+ .
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS------------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCC------------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCc------------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 777654 4567777765 3 4432222110 00144578899999999999998876 5
Q ss_pred eEEEEECCC------CeeeEEEe-ccCCCeEEEEEecCCCCEEEEEeCC--------CeEEEEeCccccCCC---cceee
Q 011216 250 CIYVYDLEA------NKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKG---KPAGV 311 (491)
Q Consensus 250 ~i~vwd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~---~~~~~ 311 (491)
.|++||+.+ ++. ..+. .+...+..++|+ ++++.|+.++.+ ..|.+||+.. .+ .....
T Consensus 162 ~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~---~g~~~~~~~l 236 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTE---DGRFADTRTL 236 (662)
T ss_dssp EEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECT---TSCEEEEEEE
T ss_pred EEEEEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECC---CCcccccEEe
Confidence 899999988 544 4555 556778889998 788888877754 3799999851 12 23333
Q ss_pred eccccccEEEEEEcCCCCEEEEeeCCC--cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEc
Q 011216 312 LMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 389 (491)
Q Consensus 312 ~~~~~~~i~~i~~sp~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
..+|...+..+.|+|||++++++..++ .|.+||+.+..... ...
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~----------------------------------l~~ 282 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ----------------------------------LCR 282 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE----------------------------------SSC
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee----------------------------------ccc
Confidence 344567899999999999888888888 56666654422100 000
Q ss_pred ccceeeee-EE-EEecCcccCCCcEEEEEecCCeEEEE--ECCCccEEEEecCCCCCeeee-EecCCCCeEEEEECCCc-
Q 011216 390 GHSVLRTL-IR-CHFSPVYSTGQKYIYTGSHDSCVYVY--DLVSGEQVAALKYHTSPVRDC-SWHPSQPMLVSSSWDGD- 463 (491)
Q Consensus 390 ~~~~~~~~-~~-~~~~~~~s~~~~~l~~g~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s~~~Dg~- 463 (491)
.+...... .. .....+++|+++++++++. +.++|| |+.+++ +..+..|...+..+ +++++.-++++++.+..
T Consensus 283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAY 360 (662)
T ss_dssp CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEE
T ss_pred ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCC
Confidence 00000000 00 0012246678999999998 988888 655555 67787787778777 55443334455565544
Q ss_pred -EEEecCCCC
Q 011216 464 -VVRWEFPGN 472 (491)
Q Consensus 464 -i~iw~~~~~ 472 (491)
|.+|++.++
T Consensus 361 ~i~~~d~~~g 370 (662)
T 3azo_A 361 EVVELDTVTG 370 (662)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEECCCC
Confidence 555555444
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=7.6e-18 Score=157.11 Aligned_cols=260 Identities=15% Similarity=0.098 Sum_probs=176.8
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeeccC---CceeEEEeEeCCCCceEEEEec--CCeE
Q 011216 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKS---LRWTVTDTSLSPDQRHLVYASM--SPIV 193 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~--dg~i 193 (491)
.++|+|||++|+++. .++.|.+||..+.+.+........ +......++|+|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 899999999999886 367899999998876666543321 1224567899999999999874 5799
Q ss_pred EEEECCCCccccc-cceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCC-CeeeEEE-----
Q 011216 194 HIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-NKLSLRI----- 265 (491)
Q Consensus 194 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~----- 265 (491)
.+||+.+++.... .... ....+.+.|++ ..+++.+.||.+.+|++.. ++.....
T Consensus 134 ~v~d~~~~~~~~~~i~~~------------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~ 195 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA------------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQM 195 (361)
T ss_dssp EEEETTTTEEEEEEGGGT------------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCC
T ss_pred EEEECCCCcEEEEEecCC------------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccce
Confidence 9999998866433 2211 12235567765 6778888899999998865 4443111
Q ss_pred -eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec--c----c----cccEEEEEEcCCCCEEEEe
Q 011216 266 -LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--G----H----LEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 266 -~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~----~----~~~i~~i~~sp~~~~l~~~ 334 (491)
..+..++ .+.++ +++..++..+.++.|.++|+.... ......+. . + ......++++|+++.++++
T Consensus 196 ~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~ 271 (361)
T 2oiz_A 196 FSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSGDE--VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVF 271 (361)
T ss_dssp SCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSSSS--CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEE
T ss_pred EcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecCCC--ceecccccccCccccccccccCCeeEEEEecCCCeEEEE
Confidence 1112221 22333 445566677788999999985211 01111110 0 0 1111237899998887765
Q ss_pred eC-----------CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEec
Q 011216 335 GK-----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 403 (491)
Q Consensus 335 ~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (491)
.. .+.|.+||+.+ .+.+..+..+. .+.
T Consensus 272 ~~~~~~~~~~~~~~~~v~viD~~t----------------------------------~~~v~~i~~~~--------p~~ 309 (361)
T 2oiz_A 272 MHPDGKEGTHKFPAAEIWVMDTKT----------------------------------KQRVARIPGRD--------ALS 309 (361)
T ss_dssp EESSCCTTCTTCCCSEEEEEETTT----------------------------------TEEEEEEECTT--------CCE
T ss_pred EccCCCcccccCCCceEEEEECCC----------------------------------CcEEEEEecCC--------eeE
Confidence 43 34799999987 34555555443 234
Q ss_pred CcccCCCcEEEEEecCCeEEEEECCCc--cEEEEecCCCCCeeeeEecCCCC
Q 011216 404 PVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSWHPSQP 453 (491)
Q Consensus 404 ~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~ 453 (491)
++|+|||++|++++. +.|.+||..++ +.+..+..+......++++|+|.
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 478889999999887 99999999999 99999876777789999999986
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=2.5e-17 Score=153.37 Aligned_cols=259 Identities=12% Similarity=0.168 Sum_probs=174.2
Q ss_pred CceEEEEEcCCCCEEEEEE---------CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC---C-
Q 011216 125 SRAYVSQFSADGSLFVAGF---------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---P- 191 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d---g- 191 (491)
..+..+++ ||++++... .++.|.+|++.++.... + ..+..++|+|||++|++++.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 45677788 999888642 25689999999875322 1 358889999999999988754 3
Q ss_pred -eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC----------------------
Q 011216 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------------- 248 (491)
Q Consensus 192 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d---------------------- 248 (491)
.|.+|++.+++...+.. +.. +..++|+|||+.|+.++.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~-----------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 146 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE-----------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGF 146 (347)
T ss_dssp EEEEEEETTTTEEEEEEE-----------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC------
T ss_pred ceEEEEECCCCceEEEEc-----------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccc
Confidence 48888888776543322 112 7889999999999888642
Q ss_pred -----CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC-------eEEEEeCccccCCCcceeeecccc
Q 011216 249 -----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-------LCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 249 -----g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
..|++||+.+++.+..+.. . .+..+.|+ +++ +++++..+. ...+|.+. .+. ...+..+
T Consensus 147 ~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~- 216 (347)
T 2gop_A 147 FDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK- 216 (347)
T ss_dssp ---CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-
T ss_pred ccCccceEEEEECCCCeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeC----CCc-eEEeccC-
Confidence 5799999998887455544 3 78899998 677 877776542 44566553 222 2333334
Q ss_pred ccEEEEEEcCCCCEEEEeeCC--------CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 317 EGITFIDSRGDGRYLISNGKD--------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
..+..+ +|+|+.|+.++.+ ..|.+|| +. ......
T Consensus 217 ~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----------------------------------~~~~l~ 258 (347)
T 2gop_A 217 VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK----------------------------------EVMGIL 258 (347)
T ss_dssp ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS----------------------------------CEEESS
T ss_pred cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC----------------------------------ceEecc
Confidence 445444 9999998877754 3577777 21 111111
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcE-EEe
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV-VRW 467 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i-~iw 467 (491)
..+.. .+.. .+.|+ ++ ++++++.++.++|| +.+++....+ .+.+.|.+++|+| .++++++.++.. .+|
T Consensus 259 ~~~~~--~~~~---~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 259 DEVDR--GVGQ---AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELF 327 (347)
T ss_dssp TTCCS--EEEE---EEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEE
T ss_pred ccCCc--ccCC---ccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHhe
Confidence 11111 1111 13567 77 88999999999999 8766654444 4577899999999 677777777664 677
Q ss_pred cCC
Q 011216 468 EFP 470 (491)
Q Consensus 468 ~~~ 470 (491)
.+.
T Consensus 328 ~~~ 330 (347)
T 2gop_A 328 TWD 330 (347)
T ss_dssp EES
T ss_pred EeC
Confidence 665
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=9.4e-17 Score=145.05 Aligned_cols=246 Identities=12% Similarity=0.148 Sum_probs=172.7
Q ss_pred CceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEc-CCCCEEEEEe
Q 011216 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDGRELVAGS 246 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s-~~~~~l~~~~ 246 (491)
+-..+.+++++|+++++++...++.|.+||.. ++......... ...++...+..+++. ++++++++..
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----------~~~~~~~~p~~i~~~~~~g~l~v~~~ 96 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----------KRDSQLLYPNRVAVVRNSGDIIVTER 96 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----------SSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC----------CCcccccCceEEEEEcCCCeEEEEcC
Confidence 33468899999999988888889999999987 33322211100 011234468899994 6776655553
Q ss_pred c-CCeEEEEECCCCeeeEEEe-ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec--cccccEEEE
Q 011216 247 S-DDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFI 322 (491)
Q Consensus 247 ~-dg~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~i 322 (491)
. ++.|.+|| .+++.+..+. .+...+.++++. ++++++++...++.|.+||.. +..+..+. .+...+..+
T Consensus 97 ~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 97 SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-----GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-----SCEEEEEECTTTCSSEEEE
T ss_pred CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCC-----CCEEEEeCCCCccCCcEEE
Confidence 3 78999999 5666665553 344578999997 678888888888999999963 44444443 344568999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEe
Q 011216 323 DSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 402 (491)
Q Consensus 323 ~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (491)
+++|+|+++++...++.|++||... ..+..+......... .
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~g-----------------------------------~~~~~~~~~g~~~~p----~ 210 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYEG-----------------------------------QYLRQIGGEGITNYP----I 210 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETTC-----------------------------------CEEEEESCTTTSCSE----E
T ss_pred EECCCCCEEEEECCCCEEEEEcCCC-----------------------------------CEEEEEccCCccCCC----c
Confidence 9999999888878889999999754 233333322111111 2
Q ss_pred cCcccCCCcEEEEEecCC-eEEEEECCCccEEEEecCCC--CCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 403 SPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHT--SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 403 ~~~~s~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.++++++|+++++...++ .|.+||. +++.+..+..+. ..+.+++++|+|+++++ +.|+.|++|++...
T Consensus 211 ~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 211 GVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 335677899888887776 9999995 577777765443 34779999999987776 67999999998654
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.5e-16 Score=143.70 Aligned_cols=246 Identities=14% Similarity=0.152 Sum_probs=171.4
Q ss_pred cCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec---cCCceeEEEeEe-CCCCceEEEEec-CCeEEE
Q 011216 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRWTVTDTSL-SPDQRHLVYASM-SPIVHI 195 (491)
Q Consensus 121 ~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~~v~~l~~-sp~~~~l~~~~~-dg~i~i 195 (491)
.++-....+++++++|+++++...++.|.+||.. +..+...... ..+...+..+++ .++++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3455678999999999988888889999999987 4344332211 123346889999 577776666543 789999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe--ccCCCeE
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVN 273 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~ 273 (491)
|+ .+++....... .+...+.+++++++|+.+++...++.|.+||.. ++.+..+. .+...+.
T Consensus 105 ~d-~~g~~~~~~~~---------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 105 YN-QYGQFVRKFGA---------------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EC-TTSCEEEEECT---------------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred EC-CCCcEEEEecC---------------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 99 44443322111 112257899999999977777778999999964 45555553 3445789
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc--cccEEEEEEcCCCCEEEEeeCCC-cEEEeeCCCCCC
Q 011216 274 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH--LEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSS 350 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~i~~i~~sp~~~~l~~~~~dg-~i~iwd~~~~~~ 350 (491)
++++. ++++++++...++.|++||.. +..+..+..+ ...+..++++++|+++++...++ .|.+||...
T Consensus 168 ~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g--- 238 (286)
T 1q7f_A 168 GVVVN-DKQEIFISDNRAHCVKVFNYE-----GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--- 238 (286)
T ss_dssp EEEEC-SSSEEEEEEGGGTEEEEEETT-----CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---
T ss_pred EEEEC-CCCCEEEEECCCCEEEEEcCC-----CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---
Confidence 99997 678888888889999999973 4445455433 35788999999999888887776 999999643
Q ss_pred ccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc
Q 011216 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 430 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~ 430 (491)
+.+..+..+..... ...++++|+|+++++ +.++.|++|++...
T Consensus 239 --------------------------------~~~~~~~~~~~~~~----~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 --------------------------------QLISALESKVKHAQ----CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --------------------------------CEEEEEEESSCCSC----EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred --------------------------------CEEEEEcccCCCCc----ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 33444433221111 123466778987766 67999999998653
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.80 E-value=2.3e-17 Score=152.67 Aligned_cols=276 Identities=10% Similarity=0.054 Sum_probs=182.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
...|.+++|++++..++..+.++.++.|. +...... ..+...+.+++|+|++++++++..++.|.+||..+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~ 78 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEI---SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI 78 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEE---ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred ccccceeeecCCccceeEEeecccCcccc---cceeEEE---eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE
Confidence 34567788999988888777888899992 3233322 23333578999999999777888889999999988765
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC----CeEEEEECCCCeeeEEEe--ccCCCeEEEEE
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRIL--AHTSDVNTVCF 277 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~i~~ 277 (491)
...... +...+.+++++++|+++++...+ +.|.+||..++.....+. .+...+.++++
T Consensus 79 ~~~~~~----------------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 79 KRPFVS----------------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp EEEEEC----------------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred EEEeeC----------------CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence 433210 11268999999999977777666 689999998876543332 24457899999
Q ss_pred ecCCCCEEEEEeC------CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEE-EeeCCCcEEEeeCCCCCC
Q 011216 278 GDESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 278 ~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~-~~~~dg~i~iwd~~~~~~ 350 (491)
. ++++++++... .+.|..+|.. .. ....+......+..++|+|+++.|+ +...++.|.+||+.....
T Consensus 143 d-~~g~l~v~~~~~~~~~~~~~l~~~~~~----~~-~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 143 D-SKGGFYFTDFRGYSTNPLGGVYYVSPD----FR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp C-TTSCEEEEECCCBTTBCCEEEEEECTT----SC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred C-CCCCEEEEeccccccCCCceEEEEeCC----CC-EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 7 67887776654 3456666653 22 2223333445678999999998665 445678899999864110
Q ss_pred -ccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC
Q 011216 351 -NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
..... ......+.++. ....++++++|+++++...++.|.+||. .
T Consensus 217 ~~~~~~--------------------------~~~~~~~~~~~-------~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~ 262 (333)
T 2dg1_A 217 TIQPFG--------------------------ATIPYYFTGHE-------GPDSCCIDSDDNLYVAMYGQGRVLVFNK-R 262 (333)
T ss_dssp SEEEEE--------------------------EEEEEECCSSS-------EEEEEEEBTTCCEEEEEETTTEEEEECT-T
T ss_pred Cccccc--------------------------ceEEEecCCCC-------CCCceEECCCCCEEEEEcCCCEEEEECC-C
Confidence 00000 00000011110 1122466778998888777899999998 5
Q ss_pred ccEEEEecCCCC------CeeeeEecCCCCeEEEEECC
Q 011216 430 GEQVAALKYHTS------PVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 430 ~~~~~~~~~h~~------~v~~~~~s~~~~~l~s~~~D 461 (491)
++.+..+..+.. .+.+++|+||+..|+.++.+
T Consensus 263 g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 263 GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 777766654432 68999999998777666555
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.79 E-value=5.2e-17 Score=164.95 Aligned_cols=280 Identities=14% Similarity=0.090 Sum_probs=171.5
Q ss_pred EEEEc--CCCCE-EEEEEC-CCeEEEEECC--C-CeEEEEEeeccC---CceeEEEeEeCCCCceEEEEecC--------
Q 011216 129 VSQFS--ADGSL-FVAGFQ-ASQIRIYDVE--R-GWKIQKDILAKS---LRWTVTDTSLSPDQRHLVYASMS-------- 190 (491)
Q Consensus 129 ~~~~s--~dg~~-l~~~~~-dg~i~vw~~~--~-~~~~~~~~~~~~---~~~~v~~l~~sp~~~~l~~~~~d-------- 190 (491)
..+|+ |||++ |+.++. +..|.+|++. . +. ...+ .... +...+..++|+|||+.|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l-~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPL-TPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEEC-SCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEec-cCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 45555 99998 776654 5677777776 2 42 2222 1111 55678999999999999998876
Q ss_pred --CeEEEEECCC------CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC--------CeEEEE
Q 011216 191 --PIVHIVDVGS------GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVY 254 (491)
Q Consensus 191 --g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d--------g~i~vw 254 (491)
..|.+||+.+ ++...+.. .+...+..++|+|||++|+.++.+ ..|++|
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~ 222 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRELSD----------------DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTA 222 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEESSC----------------SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred ceeEEEEEECCCCccccCCceeEEEe----------------cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEE
Confidence 5899999987 44332220 011257778999999999988755 379999
Q ss_pred ECC-CC---eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC--eEEEEeCccccCCCcceeeecccccc--------EE
Q 011216 255 DLE-AN---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEG--------IT 320 (491)
Q Consensus 255 d~~-~~---~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~--------i~ 320 (491)
|+. ++ +.......|...+..+.|+ ++++++++++.++ .|.+||+. .+........+... +.
T Consensus 223 d~~~~g~~~~~~~l~~~~~~~~~~~~~s-pdg~l~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~~~~p~w~~~~~ 297 (662)
T 3azo_A 223 RVTEDGRFADTRTLLGGPEEAIAQAEWA-PDGSLIVATDRTGWWNLHRVDPA----TGAATQLCRREEEFAGPLWTPGMR 297 (662)
T ss_dssp EECTTSCEEEEEEEEEETTBCEEEEEEC-TTSCEEEEECTTSSCEEEEECTT----TCCEEESSCCSSBSSCCCCSTTCC
T ss_pred EECCCCcccccEEeCCCCCceEcceEEC-CCCeEEEEECCCCCeEEEEEECC----CCceeecccccccccCccccccCc
Confidence 998 56 4433344557889999998 6777888888888 56666653 33322222222221 45
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEE
Q 011216 321 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 400 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (491)
.++|+|++++++++.. +.++||.+.... ..+..+..+... +. .
T Consensus 298 ~~~~~~~~~~~~~~~~-~~~~l~~~d~~~---------------------------------~~~~~l~~~~~~--~~-~ 340 (662)
T 3azo_A 298 WFAPLANGLIAVVHGK-GAAVLGILDPES---------------------------------GELVDAAGPWTE--WA-A 340 (662)
T ss_dssp SEEECTTSCEEEEEBS-SSCEEEEEETTT---------------------------------TEEEECCSSCCE--EE-E
T ss_pred eEeEeCCCEEEEEEEc-CccEEEEEECCC---------------------------------CcEEEecCCCCe--EE-E
Confidence 7889999999999988 999999443210 223333333211 11 1
Q ss_pred EecCcccCCCcEEEEEecCC--eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 401 HFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 401 ~~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
.+ .++++.-++++++.+. .|+++|+.+++.......+...+....+.+.....+.+..+..|..|-+.
T Consensus 341 ~~--s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 341 TL--TVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp EE--EEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred EE--ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 11 1222222333344443 57777887777655445555555555555444444444333456666553
No 175
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=4.4e-17 Score=167.21 Aligned_cols=286 Identities=13% Similarity=0.115 Sum_probs=177.2
Q ss_pred eEEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 127 AYVSQFSADGSLFVAGFQA---------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
...++|||||++|+.++.+ +.+.+||+.+++.. ....+...+...+|||||+.|+.+. ++.|.+|+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 3458999999999998876 56779999998432 2334455799999999999999985 78999999
Q ss_pred CCCCccccccceeccccccccccCCCCCce---------ecEEEEEEcCCCCEEEEEecCC-------------------
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYS---------FGIFSLKFSTDGRELVAGSSDD------------------- 249 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~i~~s~~~~~l~~~~~dg------------------- 249 (491)
+.+++...+..... ....+ .++. .....+.|||||+.|+.++.|.
T Consensus 139 ~~~~~~~~lt~~g~--~~~~~-----~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~ 211 (740)
T 4a5s_A 139 EPNLPSYRITWTGK--EDIIY-----NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP 211 (740)
T ss_dssp STTSCCEECCSCCB--TTTEE-----ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred CCCCceEEEcCCCC--cccee-----cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence 98887544322110 00000 0111 1123589999999999875321
Q ss_pred -----------------eEEEEECCC---Ce--eeEEEe------ccCCCeEEEEEecCCCCEEEEEeC----CCeEEEE
Q 011216 250 -----------------CIYVYDLEA---NK--LSLRIL------AHTSDVNTVCFGDESGHLIYSGSD----DNLCKVW 297 (491)
Q Consensus 250 -----------------~i~vwd~~~---~~--~~~~~~------~~~~~v~~i~~~~~~~~~l~s~s~----dg~i~iw 297 (491)
.|++||+.+ ++ ....+. +|...+..++|+ +++++++.... +..|.+|
T Consensus 212 ~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws-pdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA-TQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE-ETTEEEEEEEESSTTEEEEEEE
T ss_pred cceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe-CCCeEEEEEeCCCCCEEEEEEE
Confidence 588899988 73 223333 277789999999 67776655432 3479999
Q ss_pred eCccccCCCc------ceeee--ccccccEE-----EEEEcCCCCEEE-EeeC-CC--cEEEeeCCCCCCccccccCccc
Q 011216 298 DRRCLNVKGK------PAGVL--MGHLEGIT-----FIDSRGDGRYLI-SNGK-DQ--AIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 298 d~~~~~~~~~------~~~~~--~~~~~~i~-----~i~~sp~~~~l~-~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
|+. .++ .+..+ ..|...+. .+.|+|||+.|+ ..+. +| .|.+||+.....
T Consensus 291 d~~----tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~---------- 356 (740)
T 4a5s_A 291 DYD----ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC---------- 356 (740)
T ss_dssp EEE----TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----------
T ss_pred ECC----CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----------
Confidence 987 333 12222 33444333 678999999877 5543 33 588888875321
Q ss_pred ceeeceeecCCCCcccccCCCCCeeEEEc-ccceeeeeEEEEecCcccCCCcEEE-EEec--C----CeEEEEECCCccE
Q 011216 361 YEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIY-TGSH--D----SCVYVYDLVSGEQ 432 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~-~g~~--d----g~i~iwd~~~~~~ 432 (491)
..+. +.-..... .. + |++.|+ +++. + ..|+..++..+..
T Consensus 357 -------------------------~~lT~g~~~v~~~----~~--~--d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~ 403 (740)
T 4a5s_A 357 -------------------------TFITKGTWEVIGI----EA--L--TSDYLYYISNEYKGMPGGRNLYKIQLIDYTK 403 (740)
T ss_dssp -------------------------EESCCSSSCEEEE----EE--E--CSSEEEEEESCGGGCTTCBEEEEEETTEEEE
T ss_pred -------------------------EecccCCEEEEEE----EE--E--eCCEEEEEEecCCCCCceeEEEEEECCCCCc
Confidence 1111 11111111 11 2 344444 4443 1 3566666655544
Q ss_pred EEEecC----CCCCeeeeEecCCCCeEEEEECC---CcEEEecCCCC
Q 011216 433 VAALKY----HTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN 472 (491)
Q Consensus 433 ~~~~~~----h~~~v~~~~~s~~~~~l~s~~~D---g~i~iw~~~~~ 472 (491)
...+.. ....+..++|+|++++++..... ..+.+++...+
T Consensus 404 ~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 404 VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred ceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 434542 23568899999999977655433 35777776654
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=2.7e-17 Score=155.62 Aligned_cols=260 Identities=11% Similarity=0.015 Sum_probs=170.1
Q ss_pred EEECCCCeEEEEEeeccCCceeEEE-----eEeCCCCceEEEEec-CC--eEEEEECCCCccccccceeccccccccccC
Q 011216 150 IYDVERGWKIQKDILAKSLRWTVTD-----TSLSPDQRHLVYASM-SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (491)
Q Consensus 150 vw~~~~~~~~~~~~~~~~~~~~v~~-----l~~sp~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
.++..++..+..+ ..+...... .+|+|||++|++++. ++ .|.+||+.+++...+...
T Consensus 14 ~~~~~~g~~~~~l---t~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~------------ 78 (388)
T 3pe7_A 14 YQDASTGAQVTRL---TPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG------------ 78 (388)
T ss_dssp EECTTTCCEEEEC---SCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS------------
T ss_pred EecCCCCcceEEe---cCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC------------
Confidence 3456666554443 233333444 789999999999887 66 588899988876544321
Q ss_pred CCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE--ecCCCCEEEEE-----------
Q 011216 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF--GDESGHLIYSG----------- 288 (491)
Q Consensus 222 ~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~~l~s~----------- 288 (491)
+...+..+.|+|||+.|+.++.++.|++||+.+++....+..+...+....| + +++.+++..
T Consensus 79 ----~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 79 ----RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVAN-SDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ----SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCC
T ss_pred ----CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeEC-CCCCeeccccccCccccccc
Confidence 2223345689999999999999999999999999876666666655544443 4 777777642
Q ss_pred -----------eCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-CCCEEEEeeCC------CcEEEeeCCCCCC
Q 011216 289 -----------SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSS 350 (491)
Q Consensus 289 -----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~d------g~i~iwd~~~~~~ 350 (491)
..+..|.+||+. .++ ...+..+...+..++|+| ||+.|+....+ ..|.++|+....
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~----~g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~- 227 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLK----TGE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN- 227 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETT----TCC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-
T ss_pred ccchhhhhhccCCcceEEEEECC----CCc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-
Confidence 244689999986 443 445555667789999999 99998877653 367777776421
Q ss_pred ccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CC----eEEEE
Q 011216 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS----CVYVY 425 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg----~i~iw 425 (491)
...+..+... .....+.|||||+.|+..+. ++ .|++|
T Consensus 228 ----------------------------------~~~l~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 228 ----------------------------------MRKVKTHAEG----ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp ----------------------------------CEESCCCCTT----EEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred ----------------------------------eEEeeeCCCC----cccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 1112111100 11234578899997766544 22 39999
Q ss_pred ECCCccEE--EEecCCC---CCeeeeEecCCCCeEEEE---------ECCCcEEEecCCCCC
Q 011216 426 DLVSGEQV--AALKYHT---SPVRDCSWHPSQPMLVSS---------SWDGDVVRWEFPGNG 473 (491)
Q Consensus 426 d~~~~~~~--~~~~~h~---~~v~~~~~s~~~~~l~s~---------~~Dg~i~iw~~~~~~ 473 (491)
|+.+++.. ..+.++. .....++|+|||+.|+.. ..+..|++||+.++.
T Consensus 270 d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp CTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred ecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 99988743 3333211 012335899999987754 456689999998754
No 177
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=3.3e-16 Score=160.03 Aligned_cols=284 Identities=11% Similarity=0.081 Sum_probs=185.4
Q ss_pred CCCCEEEEEECC-----CeEEEEECCCCeEEEEEe----eccCCceeEEEeEeCCCCceEEEEecCC-----eEEEEECC
Q 011216 134 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVG 199 (491)
Q Consensus 134 ~dg~~l~~~~~d-----g~i~vw~~~~~~~~~~~~----~~~~~~~~v~~l~~sp~~~~l~~~~~dg-----~i~iwd~~ 199 (491)
|||++++....+ +.|.+.+...+.. ..++ ....+...+..++|||||++|+.+..++ .|++||+.
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEA-RVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCC-EEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCc-EEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 788877755432 2344444444421 1111 1223445788999999999999876543 89999999
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe----------------EEEEECCCCeee-
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC----------------IYVYDLEANKLS- 262 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~----------------i~vwd~~~~~~~- 262 (491)
+++...... . ...+..++|+|||+.|+.++.++. |++|++.+++..
T Consensus 160 tg~~~~~~~-~----------------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 160 GAKELPDVL-E----------------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp TTEEEEEEE-E----------------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC
T ss_pred CCCCCcccc-c----------------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccc
Confidence 987644211 0 013557899999999999887765 999999887632
Q ss_pred -EEEe--ccCCCeEEEEEecCCCCEEEEEeC-----CCeEEEEeCcccc--CCCc-ceeeeccccccEEEEEEcCCCCEE
Q 011216 263 -LRIL--AHTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN--VKGK-PAGVLMGHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 263 -~~~~--~~~~~v~~i~~~~~~~~~l~s~s~-----dg~i~iwd~~~~~--~~~~-~~~~~~~~~~~i~~i~~sp~~~~l 331 (491)
..+. .|...+..+.|+ +++++|+.++. +..|.+||+.... ..+. ....+..+...+.. .|+|+|+.|
T Consensus 223 ~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l 300 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVF 300 (710)
T ss_dssp EEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEE
T ss_pred eEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEE
Confidence 2222 245568899998 78888777664 5689999986200 0021 34455556555554 488899888
Q ss_pred EEeeCC----CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 332 ISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 332 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
+..+.. +.|.+||+.+... .....+..+.....+. .+.++
T Consensus 301 ~~~s~~~~~~~~l~~~d~~~~~~--------------------------------~~~~~l~~~~~~~~~~----~~~~~ 344 (710)
T 2xdw_A 301 TFKTNRHSPNYRLINIDFTDPEE--------------------------------SKWKVLVPEHEKDVLE----WVACV 344 (710)
T ss_dssp EEEECTTCTTCEEEEEETTSCCG--------------------------------GGCEEEECCCSSCEEE----EEEEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCc--------------------------------ccceeccCCCCCCeEE----EEEEE
Confidence 766653 3599999876321 0112222222111111 22344
Q ss_pred CCCcEEEEEecCC--eEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEE-E---CCCcEEEecCCCCC
Q 011216 408 TGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS-S---WDGDVVRWEFPGNG 473 (491)
Q Consensus 408 ~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-~---~Dg~i~iw~~~~~~ 473 (491)
+++.++++...++ .|++||+.+++.+..+..+.+.+..++++|+++.|+.. + ..+.|++||+.++.
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 5778888888888 46777887888888888788889999999999865533 2 34789999998765
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=7e-16 Score=142.19 Aligned_cols=256 Identities=11% Similarity=0.067 Sum_probs=173.6
Q ss_pred CCCceEEEEEcCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEEeeccCCceeEEEeEeC
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQA------------------------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~d------------------------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~s 178 (491)
--+.+.+++++|+|+++++...+ +.|.+||..++...... ...+-..+..++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--~~~~~~~p~gia~d 99 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS--GKNLFYLPHGLSID 99 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE--CTTTCSSEEEEEEC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc--CCCccCCceEEEEC
Confidence 35779999999999999888777 47999999888654432 22333468899999
Q ss_pred CCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEe-cCCeEEEEEC
Q 011216 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS-SDDCIYVYDL 256 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~-~dg~i~vwd~ 256 (491)
|+|+++++...++.|++|+...... ....+.... ......++-..+..++++| ++.++++.+ .++.|++||
T Consensus 100 ~~g~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~-----~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~- 172 (329)
T 3fvz_A 100 TDGNYWVTDVALHQVFKLDPHSKEG-PLLILGRSM-----QPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS- 172 (329)
T ss_dssp TTSCEEEEETTTTEEEEECTTCSSC-CSEEESBTT-----BCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred CCCCEEEEECCCCEEEEEeCCCCeE-EEEEecccC-----CCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence 9999888888889999999865421 111111000 0000112334688999999 788777776 689999999
Q ss_pred CCCeeeEEEecc----------CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec--cccccEEEEEE
Q 011216 257 EANKLSLRILAH----------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDS 324 (491)
Q Consensus 257 ~~~~~~~~~~~~----------~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~i~~i~~ 324 (491)
.+++.+..+... -.....+++.|..++++++...++.|++||.. .++.+..+. .+...+..+++
T Consensus 173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----TKEFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTTTTTCEEEEEE
T ss_pred CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccccCCCcceeee
Confidence 566666665422 23489999984448888888889999999986 466666663 45567889999
Q ss_pred cC------CCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 325 RG------DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 325 sp------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
+| +|+.+++...+..|++||+.+. +.+..+..... ..
T Consensus 249 ~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g----------------------------------~~~~~~~~~~~---~~ 291 (329)
T 3fvz_A 249 IPGFLFAVNGKPYFGDQEPVQGFVMNFSSG----------------------------------EIIDVFKPVRK---HF 291 (329)
T ss_dssp ETTEEEEEECCCCTTCSCCCCEEEEETTTC----------------------------------CEEEEECCSSS---CC
T ss_pred cCCEEEEeCCCEEeccCCCcEEEEEEcCCC----------------------------------eEEEEEcCCCC---cc
Confidence 99 3333333334558999998763 33333321100 00
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECC
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 428 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~ 428 (491)
.....++++|+|.++++...++.|++|++.
T Consensus 292 ~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 292 DMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp SSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred CCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 112334677899888888889999999974
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.75 E-value=5.5e-15 Score=144.73 Aligned_cols=278 Identities=14% Similarity=0.030 Sum_probs=189.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC--CCccccccceec
Q 011216 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG--SGTMESLANVTE 211 (491)
Q Consensus 134 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~ 211 (491)
|.+.++++...++.|.++|..+++.+..+.... .+..+.|+|||+++++++.++.|.+||+. +++........
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-
Confidence 445566777789999999999987666543221 46789999999999999999999999996 55443222111
Q ss_pred cccccccccCCCCCceecEEEEEEc----CCCCEEEEEec-CCeEEEEECCCCeeeEEEec----------cCC-CeEEE
Q 011216 212 IHDGLDFSAADDGGYSFGIFSLKFS----TDGRELVAGSS-DDCIYVYDLEANKLSLRILA----------HTS-DVNTV 275 (491)
Q Consensus 212 ~~~~~~~~~~~~~~h~~~v~~i~~s----~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~----------~~~-~v~~i 275 (491)
.....++|+ |||+++++++. ++.|.++|..+.+.+..+.. |.. .+..+
T Consensus 240 ----------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i 303 (567)
T 1qks_A 240 ----------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 303 (567)
T ss_dssp ----------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred ----------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE
Confidence 045789999 69998888765 58999999999988876642 212 67788
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCCcccc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 354 (491)
..++....+++....+|.|.++|..... ...+..+ ........+.|+|++++++++. .++.|.++|+.+.+
T Consensus 304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~--~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----- 375 (567)
T 1qks_A 304 LASHYRPEFIVNVKETGKILLVDYTDLN--NLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----- 375 (567)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSS--EEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-----
T ss_pred EEcCCCCEEEEEecCCCeEEEEecCCCc--cceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc-----
Confidence 8885556667777788999999986211 0111122 2234567889999999987655 57889999998732
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcc-cceeeeeEEEEecCcccCCCcEE-EEEe-cCCeEEEEECCC--
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYI-YTGS-HDSCVYVYDLVS-- 429 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l-~~g~-~dg~i~iwd~~~-- 429 (491)
.+..+.. ........... .++|++..+ +++. .++.|.++|..+
T Consensus 376 -----------------------------l~~~i~vgg~~Phpg~g~~---~~~p~~g~v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 376 -----------------------------LVAIEDTGGQTPHPGRGAN---FVHPTFGPVWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp -----------------------------EEEEEECSSSSBCCTTCEE---EEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred -----------------------------EEEEEeccCcCCCCcccee---eECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence 2222221 11000000000 134554444 4443 468999999987
Q ss_pred -----ccEEEEecCCCCCeeeeEecCCCCeEEEEEC-------CCcEEEecCCCC
Q 011216 430 -----GEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-------DGDVVRWEFPGN 472 (491)
Q Consensus 430 -----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------Dg~i~iw~~~~~ 472 (491)
.+.+..+......-..+..+|++++|.+... .+.|.++|+.+.
T Consensus 424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 6778888755444355789999998888763 358999999876
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=3.1e-14 Score=129.19 Aligned_cols=282 Identities=9% Similarity=0.059 Sum_probs=187.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCC
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~ 201 (491)
.+...+.+++++++|+++++...++.|.+||.. +.. .... .......+.+++++++++++++...++.|..|+.. +
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 445789999999999988776668899999988 532 2222 12233468999999999977777668899999976 3
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE-EeccCCCeEEEEEecC
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDE 280 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~i~~~~~ 280 (491)
+... .... .....+.++++.++|+.+++...++.|.+||. +++.... ...+...+..+++. +
T Consensus 88 ~~~~-~~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~ 150 (299)
T 2z2n_A 88 IIKE-YTLP--------------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-S 150 (299)
T ss_dssp CEEE-EECS--------------STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-T
T ss_pred cEEE-EeCC--------------CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc-C
Confidence 3211 1110 01125788999999987777777889999998 5544322 22345678999997 7
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCccee-eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcc
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
+++++++...++.|..||.. +.... ........+..++++++|+++++...++.|.+||. +..
T Consensus 151 ~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------- 214 (299)
T 2z2n_A 151 DNALWFTENQNNAIGRITES-----GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------- 214 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC----------
T ss_pred CCCEEEEeCCCCEEEEEcCC-----CcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc----------
Confidence 78888777778899999972 22221 12334456889999999997777666788999998 421
Q ss_pred cceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE-EecC
Q 011216 360 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKY 438 (491)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~-~~~~ 438 (491)
+..+........ ...++++++|++.++...++.|..||. +++... .+..
T Consensus 215 -------------------------~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 264 (299)
T 2z2n_A 215 -------------------------ITEFKIPTPNAR----PHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQI 264 (299)
T ss_dssp -------------------------EEEEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSS
T ss_pred -------------------------EEEEECCCCCCC----ceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCC
Confidence 111111100011 123356668886666657789999998 454332 2334
Q ss_pred CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 439 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 439 h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
+...+.++++ +++.++++.. .+.|..++....
T Consensus 265 ~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 265 KSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5567899999 8888766654 566777776543
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=1.5e-15 Score=155.25 Aligned_cols=248 Identities=14% Similarity=0.134 Sum_probs=164.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe----
Q 011216 122 QTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 192 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~---- 192 (491)
+|...+..++|||||++||.+..++ .|++||+.+++........ ..+..++|+|||+.|++++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCccccc
Confidence 3555788999999999999776543 8999999998665432211 12567899999999999988765
Q ss_pred ------------EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-----CCeEEEEE
Q 011216 193 ------------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYD 255 (491)
Q Consensus 193 ------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-----dg~i~vwd 255 (491)
|++|++.+++......... ..|...+..+.|+|||++|+.++. +..|++||
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~------------~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF------------PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred cccccccCCCCEEEEEECCCCcccceEEecc------------CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 9999998776421111110 012225778999999999988765 56899999
Q ss_pred CCC------Ce-eeEEEeccCCCeEEEEEecCCCCEEEEEeCC----CeEEEEeCccccCCCc--ceeeeccccc--cEE
Q 011216 256 LEA------NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGK--PAGVLMGHLE--GIT 320 (491)
Q Consensus 256 ~~~------~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~--~~~~~~~~~~--~i~ 320 (491)
+.+ +. ....+..+...+.. .|+ +++..|+..+.. +.|.+||+. .+. ....+..|.. .+.
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s-~dg~~l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~ 339 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFT----DPEESKWKVLVPEHEKDVLE 339 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCEEE
T ss_pred CcccccccCCccceEEeeCCCCcEEE-EEe-ccCCEEEEEECCCCCCCEEEEEeCC----CCCcccceeccCCCCCCeEE
Confidence 986 43 35566666666655 466 456655555443 369999986 332 2244444544 688
Q ss_pred EEEEcCCCCEEEEeeCCCc--EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 321 FIDSRGDGRYLISNGKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
.++|++++.++++...++. |.+||+.++ +.+..+..+. ..+
T Consensus 340 ~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----------------------------------~~~~~l~~~~--~~v- 382 (710)
T 2xdw_A 340 WVACVRSNFLVLCYLHDVKNTLQLHDLATG----------------------------------ALLKIFPLEV--GSV- 382 (710)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEETTTC----------------------------------CEEEEECCCS--SEE-
T ss_pred EEEEEcCCEEEEEEEECCEEEEEEEECCCC----------------------------------CEEEecCCCC--ceE-
Confidence 8999987888888888885 566676442 2333443331 111
Q ss_pred EEEecCcccCCCcEEEEEec----CCeEEEEECCCcc
Q 011216 399 RCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGE 431 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~ 431 (491)
..+.++|+++.++.... .+.|++||+.+++
T Consensus 383 ---~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 ---VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 22345667766654322 4789999998877
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.74 E-value=3.7e-16 Score=159.18 Aligned_cols=279 Identities=10% Similarity=0.004 Sum_probs=175.6
Q ss_pred CCCCEEEEEECCC-----eEEEEECCCCeEEEEEee----ccCCceeEEEeEeCCCCceEEEEe-----cCCeEEEEECC
Q 011216 134 ADGSLFVAGFQAS-----QIRIYDVERGWKIQKDIL----AKSLRWTVTDTSLSPDQRHLVYAS-----MSPIVHIVDVG 199 (491)
Q Consensus 134 ~dg~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~----~~~~~~~v~~l~~sp~~~~l~~~~-----~dg~i~iwd~~ 199 (491)
|+|++++....++ .|.+.+...+. ...+.. ..+|...+..++|||||++|+.+. .+..|++||+.
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 7888877665433 34444544442 222221 224556799999999999999543 34689999999
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe-------------EEEEECCCCee----e
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------------IYVYDLEANKL----S 262 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~-------------i~vwd~~~~~~----~ 262 (491)
+++......... . ....++|+|||+.|+.++.+.. |++|++.++.. +
T Consensus 156 tg~~~~~~~~~~--------------~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv 219 (695)
T 2bkl_A 156 SGEWSKVDVIEG--------------G--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV 219 (695)
T ss_dssp TCCBCSSCCBSC--------------C--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred CCCCcCCcccCc--------------c--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence 987641111100 0 1156899999999999988765 99999988762 2
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEeCCC----eEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee---
Q 011216 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--- 335 (491)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~--- 335 (491)
.....+...+..+.|+ +++++|+.++.++ .|.+|+.. .+ ....+..+...+....+ ++|.+++...
T Consensus 220 ~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~ 292 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGA 292 (695)
T ss_dssp ECCCCCTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTC
T ss_pred EecCCCCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCC
Confidence 2223455678999998 7777777766555 56666543 22 34455555556666666 5666444433
Q ss_pred CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.++.|.+||+.+.... ....+..+.....+.. +.++ ++.++++
T Consensus 293 ~~~~l~~~d~~~~~~~--------------------------------~~~~l~~~~~~~~l~~----~~~~-~~~lv~~ 335 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARA--------------------------------SWKEIVPEDSSASLLS----VSIV-GGHLSLE 335 (695)
T ss_dssp TTCEEEEEBTTBCSGG--------------------------------GCEEEECCCSSCEEEE----EEEE-TTEEEEE
T ss_pred CCCEEEEEeCCCCCcc--------------------------------CCeEEecCCCCCeEEE----EEEE-CCEEEEE
Confidence 2578999998763210 0111111110011111 1233 6788899
Q ss_pred EecCCeEEEEECC-CccEEEEecCC-CCCeeeeEecCCCCeEEEEE----CCCcEEEecCCCCC
Q 011216 416 GSHDSCVYVYDLV-SGEQVAALKYH-TSPVRDCSWHPSQPMLVSSS----WDGDVVRWEFPGNG 473 (491)
Q Consensus 416 g~~dg~i~iwd~~-~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~----~Dg~i~iw~~~~~~ 473 (491)
...|+..+||.+. +++.+..+..+ .+.+..++++|+++.|+... ..+.|++||+.++.
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9999988877654 46666667655 67788899999998666332 34789999998764
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.73 E-value=5.9e-15 Score=133.92 Aligned_cols=249 Identities=9% Similarity=0.070 Sum_probs=169.1
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
...+..+.....+++|+|+|+ +++++..++.|..|+..++ ..... .+...+.+++++|+|+++++...++.|.+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 345555666778999999998 7788888999999999887 33222 23346899999999998777766789999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE----Ee-------------cCCeEEEEECCC
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GS-------------SDDCIYVYDLEA 258 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~----~~-------------~dg~i~vwd~~~ 258 (491)
||..+++........... ....+.+++++|+|+++++ |+ ..+.|+.++..
T Consensus 95 ~d~~~g~~~~~~~~~~~~------------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGK------------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp ECSTTCCEEEEECEETTE------------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EcCCCCcEEEEeeccCCC------------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 999887754332211100 1114667999999998776 33 13467777665
Q ss_pred CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcc---eeeeccccccEEEEEEcCCCCEEEEee
Q 011216 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP---AGVLMGHLEGITFIDSRGDGRYLISNG 335 (491)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~i~~i~~sp~~~~l~~~~ 335 (491)
++ ...+..+......++|+ ++++.+++.+.++.|.+|++.. .+.. ...+..+...+..++++++|+++++.
T Consensus 162 g~-~~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 162 GT-LSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp SC-EEEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CC-EEEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 44 34445666778999998 7788778888889999999851 1222 12223344556789999999876665
Q ss_pred CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 336 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 336 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
++.|.+||... +.+..+..+.. ...+.|. +|+++.|++
T Consensus 236 -~~~v~~~~~~g-----------------------------------~~~~~~~~~~~---~~~~~f~---~~d~~~L~v 273 (296)
T 3e5z_A 236 -GDGVHVLTPDG-----------------------------------DELGRVLTPQT---TSNLCFG---GPEGRTLYM 273 (296)
T ss_dssp -TTEEEEECTTS-----------------------------------CEEEEEECSSC---CCEEEEE---STTSCEEEE
T ss_pred -CCeEEEECCCC-----------------------------------CEEEEEECCCC---ceeEEEE---CCCCCEEEE
Confidence 78899999763 44444544432 2222232 468888988
Q ss_pred EecCCeEEEEECCCccE
Q 011216 416 GSHDSCVYVYDLVSGEQ 432 (491)
Q Consensus 416 g~~dg~i~iwd~~~~~~ 432 (491)
++.+ .+.-++..+.+.
T Consensus 274 ~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 274 TVST-EFWSIETNVRGL 289 (296)
T ss_dssp EETT-EEEEEECSCCBC
T ss_pred EcCC-eEEEEEcccccc
Confidence 8876 466677766554
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.71 E-value=9.4e-16 Score=156.19 Aligned_cols=250 Identities=11% Similarity=0.041 Sum_probs=162.4
Q ss_pred CCCCceEEEEEcCCCCEEEE-----EECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe----
Q 011216 122 QTTSRAYVSQFSADGSLFVA-----GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---- 192 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~-----~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~---- 192 (491)
+|...+..++|||||++||. |+.+..|++||+.+++.+.. ...... ....++|+|||+.|++++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCCEEEEEEecCCCCCc
Confidence 46667999999999999994 44456899999999854300 011111 1257899999999999988766
Q ss_pred ---------EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC----eEEEEECCCC
Q 011216 193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEAN 259 (491)
Q Consensus 193 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg----~i~vwd~~~~ 259 (491)
|++|++.++.......... ..|...+..+.|+|||++|+.++.++ .|++|+..++
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHER------------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECC------------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEec------------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 9999998876431111110 11233678999999999998887666 6888876655
Q ss_pred eeeEEEeccCCCeEEEEEecCCCCEEEEEe---CCCeEEEEeCccccCCCcc--eeeeccc--cccEEEEEEcCCCCEEE
Q 011216 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKP--AGVLMGH--LEGITFIDSRGDGRYLI 332 (491)
Q Consensus 260 ~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~--~~~~~~~--~~~i~~i~~sp~~~~l~ 332 (491)
+. ..+..+...+....+. .++ +++... .++.|.+||+. .+.. ...+..+ ...+..++|+ ++.+++
T Consensus 263 ~~-~~l~~~~~~~~~~~~~-~g~-l~~~s~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~ 334 (695)
T 2bkl_A 263 DF-RLLVKGVGAKYEVHAW-KDR-FYVLTDEGAPRQRVFEVDPA----KPARASWKEIVPEDSSASLLSVSIV-GGHLSL 334 (695)
T ss_dssp SC-EEEEECSSCCEEEEEE-TTE-EEEEECTTCTTCEEEEEBTT----BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEE
T ss_pred ce-EEeecCCCceEEEEec-CCc-EEEEECCCCCCCEEEEEeCC----CCCccCCeEEecCCCCCeEEEEEEE-CCEEEE
Confidence 43 4555666666777673 544 555554 25789999986 3221 2233333 4457888888 677888
Q ss_pred EeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcE
Q 011216 333 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 412 (491)
Q Consensus 333 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 412 (491)
+...|+..+||.+... +.....+..+. ......+.++|+++.
T Consensus 335 ~~~~dg~~~l~~~~~~---------------------------------g~~~~~l~~~~-----~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 335 EYLKDATSEVRVATLK---------------------------------GKPVRTVQLPG-----VGAASNLMGLEDLDD 376 (695)
T ss_dssp EEEETTEEEEEEEETT---------------------------------CCEEEECCCSS-----SSEECCCBSCTTCSE
T ss_pred EEEECCEEEEEEEeCC---------------------------------CCeeEEecCCC-----CeEEEEeecCCCCCE
Confidence 8889998888865421 12222222211 012234467778877
Q ss_pred EEEEe----cCCeEEEEECCCccE
Q 011216 413 IYTGS----HDSCVYVYDLVSGEQ 432 (491)
Q Consensus 413 l~~g~----~dg~i~iwd~~~~~~ 432 (491)
++... ..+.|++||+.+++.
T Consensus 377 l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 377 AYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEcCCCCCCEEEEEECCCCcE
Confidence 76433 247899999988774
No 185
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=4.7e-16 Score=147.44 Aligned_cols=261 Identities=11% Similarity=-0.016 Sum_probs=164.6
Q ss_pred EEEECCCCeEEEEEeeccC--CceeEEEeEeCCCCceEEEEecC---CeEEEEECCCCccccccceeccccccccccCCC
Q 011216 149 RIYDVERGWKIQKDILAKS--LRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 149 ~vw~~~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
...|..++..+..+..... +...+..++|+|||++|+.+... ..|.+||+.+++...+....
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~------------- 79 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK------------- 79 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS-------------
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC-------------
Confidence 3446677655444322111 11226678999999998887643 47899999887654332211
Q ss_pred CCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEE-------------------EEEecCCCCE
Q 011216 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-------------------VCFGDESGHL 284 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~~ 284 (491)
......+.|+|||+.|+.++.++.|++||+.+++.......+...... +.|+ ++++.
T Consensus 80 ---~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~ 155 (396)
T 3c5m_A 80 ---GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSW 155 (396)
T ss_dssp ---CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSH
T ss_pred ---CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC-CCCcc
Confidence 011223689999999999999999999999988765555434432222 2344 45555
Q ss_pred EEEE-----eCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcC-CCCEEEEeeCC------CcEEEeeCCCCCCcc
Q 011216 285 IYSG-----SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSNA 352 (491)
Q Consensus 285 l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~d------g~i~iwd~~~~~~~~ 352 (491)
++.+ ..+..|.+||+. .++.. .+..+...+..+.|+| +++.|+..+.+ ..|.+||+....
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~----~g~~~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--- 227 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIE----TGELE-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--- 227 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETT----TCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---
T ss_pred eeeeeeccCCCcceEEEEECC----CCcEE-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---
Confidence 4433 356689999986 44433 3335667789999999 78877766543 357888875421
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC-----CeEEEEEC
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----SCVYVYDL 427 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~ 427 (491)
...+..+.. ......+.|+|+|++|+.++.+ +.|++||+
T Consensus 228 --------------------------------~~~l~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 228 --------------------------------VRKIKEHAE----GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP 271 (396)
T ss_dssp --------------------------------CEESSCCCT----TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred --------------------------------eeEeeccCC----CccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence 111111100 0112345788899988777654 44999999
Q ss_pred CCccEEEEecCCCCCeeeeEecC-CCCeEEEEE----------------CCCcEEEecCCCCC
Q 011216 428 VSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSS----------------WDGDVVRWEFPGNG 473 (491)
Q Consensus 428 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~----------------~Dg~i~iw~~~~~~ 473 (491)
.+++...... ... .. +.|+| ||++|++++ .++.|++||+.++.
T Consensus 272 ~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 272 ETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp TTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred CCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 8887544332 112 33 89999 999888765 34789999987654
No 186
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.70 E-value=7.3e-14 Score=130.21 Aligned_cols=290 Identities=11% Similarity=-0.023 Sum_probs=183.8
Q ss_pred EEcCCCCEEEEEEC--CC---eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe----------cCCeEEE
Q 011216 131 QFSADGSLFVAGFQ--AS---QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHI 195 (491)
Q Consensus 131 ~~s~dg~~l~~~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~----------~dg~i~i 195 (491)
...|+++++.+... .. .|.+||..+++.+..... + . .. .++++||+++|+++. .++.|.+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g-~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~v 101 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G-F-LP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV 101 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C-C-CC-CeEECCCCCEEEEEeccccccccCCCCCeEEE
Confidence 34467777666543 22 889999999866544322 1 1 23 899999999999886 3678999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeEE-EeccCCCe
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLR-ILAHTSDV 272 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~v 272 (491)
||..+.+............ + . +......++|+|||++|++++. ++.|.++| .+++.+.. +.. ..
T Consensus 102 iD~~t~~~~~~i~~~~~~~---~----~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~-- 168 (373)
T 2mad_H 102 FDPVTFLPIADIELPDAPR---F----D--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT-- 168 (373)
T ss_pred EECCCCcEEEEEECCCccc---c----c--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc--
Confidence 9998876654433220000 0 0 0013457899999999998874 47899999 99988766 532 22
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-----ccccc-EEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-----GHLEG-ITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~-i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
++.+.|...+.+++.+.||.+.++|. ... ...... ....+ .....+.+++..++..+..+.+.+.|+.
T Consensus 169 -~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~ 242 (373)
T 2mad_H 169 -CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG----AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred -eEEEEeCCCceEEEEcCCCCEEEEEC-CCc----EEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence 24444555677788889999999997 322 111110 11112 1234556666555544577889999986
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce----eeeeEEEEecCcccCCCcEEEEEec----
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSH---- 418 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~---- 418 (491)
..... .+..+..... ............++|+++.++++..
T Consensus 243 ~~~~~--------------------------------v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 243 AAGAT--------------------------------NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CCcce--------------------------------EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 53210 0111110000 0000000111246778888887654
Q ss_pred ------CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCC-eEEEEE-CCCcEEEecCCCCCCCCC
Q 011216 419 ------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEAAP 477 (491)
Q Consensus 419 ------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~Dg~i~iw~~~~~~~~~~ 477 (491)
++.|.++|+.+++.+..+.. ......++|+|||+ .|+++. .++.|.+||+.+.+....
T Consensus 291 ~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred ccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 35799999999999998863 33579999999999 788877 589999999998775543
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=2.9e-13 Score=132.58 Aligned_cols=302 Identities=11% Similarity=0.059 Sum_probs=195.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEeeccCCceeEEEeEeC----CCCceEEEEec-CCeEEEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE--RGWKIQKDILAKSLRWTVTDTSLS----PDQRHLVYASM-SPIVHIV 196 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~v~~l~~s----p~~~~l~~~~~-dg~i~iw 196 (491)
...+..++|||||++|++++.++.|.+||+. +++.+..... + .....++|+ |||++++++.+ +++|.++
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C--CCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 3456789999999999999999999999995 6655544332 1 146789999 69998888765 4899999
Q ss_pred ECCCCccccccceeccccccccccCCCCCcee-cEEEEEEcCCCCEEEE-EecCCeEEEEECCCCeeeEEE-eccCCCeE
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRI-LAHTSDVN 273 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~i~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~ 273 (491)
|..+.+............ .....|.. .+..+..++++..++. ...+|.|.++|....+.+... ........
T Consensus 272 D~~t~~~~~~i~~~~~~~------~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~ 345 (567)
T 1qks_A 272 DGETLEPKKIQSTRGMTY------DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 345 (567)
T ss_dssp ETTTCCEEEEEECCEECT------TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred ECCCCcEEEEEecccccc------ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence 998877765444321100 00001222 5778888988765444 455799999999775432221 13445677
Q ss_pred EEEEecCCCCEEEEEe-CCCeEEEEeCccccCCCcceeeecc-----ccccEEEEEEcCCCCEE-EEee-CCCcEEEeeC
Q 011216 274 TVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG-----HLEGITFIDSRGDGRYL-ISNG-KDQAIKLWDI 345 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~-----~~~~i~~i~~sp~~~~l-~~~~-~dg~i~iwd~ 345 (491)
++.|+ +++++|+++. .++.|.++|+. +++.+..+.. |.+.-..+ ++|++..+ +++. .++.|.++|.
T Consensus 346 d~~~~-pdgr~~~va~~~sn~V~ViD~~----t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 346 DGGLD-GSHRYFITAANARNKLVVIDTK----EGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT 419 (567)
T ss_dssp EEEEC-TTSCEEEEEEGGGTEEEEEETT----TTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CceEC-CCCCEEEEEeCCCCeEEEEECC----CCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence 88997 6777766554 67899999997 5554443322 33211122 58875444 4443 4689999998
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-------
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------- 418 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------- 418 (491)
......... .+.+.++...... .+.+..+|++++|.+...
T Consensus 420 ~~~~~~~~~---------------------------~kvv~~i~~~g~g------~~~i~~~p~~~~l~v~~~~~~~~~~ 466 (567)
T 1qks_A 420 DPEGHPDNA---------------------------WKILDSFPALGGG------SLFIKTHPNSQYLYVDATLNPEAEI 466 (567)
T ss_dssp CTTTCTTTB---------------------------TSEEEEEECSCSC------CCCEECCTTCSEEEEECTTCSSHHH
T ss_pred CCCCCcccc---------------------------CEEEEEEecCCCC------CEEEEeCCCCCeEEEecCCCCCccc
Confidence 763211000 1344444433210 011245789999998763
Q ss_pred CCeEEEEECCCc-----c-EEEEec--------CCCCCeeeeEecCCCCeEEEEEC-----CCcEEEecCCCCCC
Q 011216 419 DSCVYVYDLVSG-----E-QVAALK--------YHTSPVRDCSWHPSQPMLVSSSW-----DGDVVRWEFPGNGE 474 (491)
Q Consensus 419 dg~i~iwd~~~~-----~-~~~~~~--------~h~~~v~~~~~s~~~~~l~s~~~-----Dg~i~iw~~~~~~~ 474 (491)
...|.++|+.+. . ....+. .....+..+.|+|+|+.+..+.+ ++.|.|+|..+.+.
T Consensus 467 ~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 467 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp HTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred CceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 358999999876 2 112332 12356899999999997776643 79999999887653
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=1.2e-14 Score=131.88 Aligned_cols=235 Identities=9% Similarity=-0.001 Sum_probs=159.6
Q ss_pred eEEEeEeCCCCc-eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~l~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
...+++|+|+++ +++++..++.|..|+..++ .... .. +...+.+++++++|+++++...++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~-~~----------------~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPE-MH----------------PSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEE-ES----------------SCSSEEEEEECTTCCEEEEETTTT
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEE-EC----------------CCCCcceeeECCCCcEEEEecCCC
Confidence 467899999998 7777788899999999876 3211 10 122688999999999877776678
Q ss_pred eEEEEECCCCeeeEEEecc----CCCeEEEEEecCCCCEEEE----Ee-------------CCCeEEEEeCccccCCCcc
Q 011216 250 CIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYS----GS-------------DDNLCKVWDRRCLNVKGKP 308 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~~l~s----~s-------------~dg~i~iwd~~~~~~~~~~ 308 (491)
.|.+||..+++........ ...++.+++. ++++++++ |+ ..+.|..++.. ..
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~------g~ 163 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD------GT 163 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT------SC
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC------CC
Confidence 9999999887754333221 2356789997 78888887 33 12455555542 23
Q ss_pred eeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEE
Q 011216 309 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 388 (491)
Q Consensus 309 ~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (491)
...+..+......++|+|+++.+++.+.++.|.+||+....... .....+
T Consensus 164 ~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------------------------------~~~~~~ 213 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------------------------------YQGVHF 213 (296)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------------------------------EEEEEE
T ss_pred EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------------------------------CCCeEe
Confidence 33444556677899999999999777778899999986211000 001111
Q ss_pred cccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEe-cCCCCeEEEEECCCcEEEe
Q 011216 389 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW-HPSQPMLVSSSWDGDVVRW 467 (491)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~Dg~i~iw 467 (491)
..+. .....++++++|++.++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +..+
T Consensus 214 ~~~~------~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~ 282 (296)
T 3e5z_A 214 TVEP------GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSI 282 (296)
T ss_dssp CCSS------SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEE
T ss_pred eCCC------CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEE
Confidence 1000 011233567789866665 7889999985 888888887777 999999 68999898888764 4444
Q ss_pred cCCC
Q 011216 468 EFPG 471 (491)
Q Consensus 468 ~~~~ 471 (491)
+..+
T Consensus 283 ~~~~ 286 (296)
T 3e5z_A 283 ETNV 286 (296)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 4433
No 189
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.69 E-value=5.8e-13 Score=120.79 Aligned_cols=278 Identities=11% Similarity=0.050 Sum_probs=185.1
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
....+.+++++++|++.++...++.|.+||.. +.... . ........+..+++.++++++++...++.|..+|.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-F-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-E-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 35678999999999988877778999999988 53322 2 122233468999999999877776667899999987 54
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeE-EEeccCCCeEEEEEecCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~~~~ 281 (491)
.... .... ....+.++++.++|+++++...++.|..+|.. ++... .+......+.++++. ++
T Consensus 94 ~~~~-~~~~--------------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~ 156 (300)
T 2qc5_A 94 FTEY-PLPQ--------------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SD 156 (300)
T ss_dssp EEEE-ECSS--------------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TT
T ss_pred eEEe-cCCC--------------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CC
Confidence 4211 1110 01258899999999877777668899999987 55432 222345678999997 67
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCccee-eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccc
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 360 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 360 (491)
++++++...++.|..+|.. +.... ....+...+..+++.++|+++++....+.|.+||...
T Consensus 157 g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g------------- 218 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNT-----GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTG------------- 218 (300)
T ss_dssp SSEEEEETTTTEEEEECTT-----CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTC-------------
T ss_pred CCEEEEecCCCeEEEECCC-----CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCC-------------
Confidence 8877777668899999873 22221 2223445688999999998777766677899998732
Q ss_pred ceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE-EEecCC
Q 011216 361 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AALKYH 439 (491)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~-~~~~~h 439 (491)
. +..+........ ...++++++|++.++...++.|..||. +++.. ..+...
T Consensus 219 ----------------------~-~~~~~~~~~~~~----~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~ 270 (300)
T 2qc5_A 219 ----------------------E-ISEYDIPTPNAR----PHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE 270 (300)
T ss_dssp ----------------------C-EEEEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST
T ss_pred ----------------------c-EEEEECCCCCCC----ceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc
Confidence 1 111110000011 123356668886666666789999998 45433 223334
Q ss_pred CCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 440 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 440 ~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
...+.++++.++|.++++.. . .|..++.
T Consensus 271 ~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 271 NAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 56789999999998666554 4 6666654
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.69 E-value=7.8e-15 Score=131.14 Aligned_cols=242 Identities=8% Similarity=0.016 Sum_probs=160.9
Q ss_pred eEEEeEeCCCCceEE-EEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 171 TVTDTSLSPDQRHLV-YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
...++++++++++++ +...++.|.+|+..+........ .+...+.++++.++|+.+++.. ++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~p~~i~~~~~g~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF----------------NGLYQPQGLAVDGAGTVYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCC----------------CSCCSCCCEEECTTCCEEEEET-TT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEee----------------CCcCCcceeEECCCCCEEEEcC-CC
Confidence 578899999998666 44677899999876554321110 0112467899999998555555 88
Q ss_pred eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC
Q 011216 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~ 329 (491)
.|.+||................+..+++. ++++++++...++.|.+|+.. ..............+..++++++|+
T Consensus 88 ~i~~~d~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~~~~g~ 162 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAG----SKTQTVLPFTGLNDPDGVAVDNSGN 162 (270)
T ss_dssp EEEEECTTCSCCEECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTT----CCSCEECCCCSCCSCCCEEECTTCC
T ss_pred EEEEEeCCCceEeeeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECC----CceeEeeccccCCCceeEEEeCCCC
Confidence 99999987665432221233578999997 678888877788899999754 2222222222334567899999999
Q ss_pred EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCC
Q 011216 330 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 409 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 409 (491)
++++...++.|.+||...... ....... ... ...++++++
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~-----------------------------------~~~~~~~-~~~----p~~i~~d~~ 202 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQ-----------------------------------VVLPFTD-ITA----PWGIAVDEA 202 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCE-----------------------------------EECCCSS-CCS----EEEEEECTT
T ss_pred EEEEECCCCEEEEEecCCCce-----------------------------------EeecccC-CCC----ceEEEECCC
Confidence 777777788999999875221 1000000 011 122356678
Q ss_pred CcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 410 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 410 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
|.++++...++.|.+||............+...+.+++++++|+++++...++.|+++++.....
T Consensus 203 g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 203 GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred CCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 87777777788999999866544332223345689999999999888888999999999876543
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=8.4e-15 Score=136.15 Aligned_cols=218 Identities=11% Similarity=0.085 Sum_probs=150.1
Q ss_pred eEEEeEeCCCCceEEEEe---------cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCE
Q 011216 171 TVTDTSLSPDQRHLVYAS---------MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 241 (491)
.+..+++ ||+.++... .++.|.+|++.+++...+ ..+..++|+|||++
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---------------------~~~~~~~~SpDg~~ 72 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---------------------ENATMPRISPDGKK 72 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---------------------ESCEEEEECTTSSE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---------------------ccCCCeEECCCCCE
Confidence 4677777 888887653 256799999988764322 15778999999999
Q ss_pred EEEEecC---C--eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCC-------------------------
Q 011216 242 LVAGSSD---D--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------------------------- 291 (491)
Q Consensus 242 l~~~~~d---g--~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d------------------------- 291 (491)
|+.++.+ + .|++||+.+++...... +.. +..+.|+ ++++.|+.++.+
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDG 149 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------
T ss_pred EEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccC
Confidence 9887754 3 48888998887654443 334 9999998 778877777632
Q ss_pred --CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC-------cEEEeeCCCCCCccccccCcccce
Q 011216 292 --NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-------AIKLWDIRKMSSNASCNLGFRSYE 362 (491)
Q Consensus 292 --g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~ 362 (491)
..|.+||+. .+..+..+.. . .+..++|+|+| +++++..++ ...||.+.+
T Consensus 150 ~~~~l~~~d~~----~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~--------------- 207 (347)
T 2gop_A 150 EKTTFWIFDTE----SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED--------------- 207 (347)
T ss_dssp CEEEEEEEETT----TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET---------------
T ss_pred ccceEEEEECC----CCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC---------------
Confidence 578899986 4444244444 3 77889999999 777775542 334443332
Q ss_pred eeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC--------CeEEEEECCCccEEE
Q 011216 363 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--------SCVYVYDLVSGEQVA 434 (491)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d--------g~i~iwd~~~~~~~~ 434 (491)
.....+..+ .. ...+ +|||++|+.++.+ ..|++|| +++...
T Consensus 208 --------------------~~~~~l~~~---~~----~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 256 (347)
T 2gop_A 208 --------------------GKEEKMFEK---VS----FYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMG 256 (347)
T ss_dssp --------------------TEEEEEEEE---ES----EEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEE
T ss_pred --------------------CceEEeccC---cc----eeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEe
Confidence 111222111 11 1122 7899988887754 4788888 666655
Q ss_pred EecCCCCCeee-eEecCCCCeEEEEECCCcEEEecCC
Q 011216 435 ALKYHTSPVRD-CSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 435 ~~~~h~~~v~~-~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
....|...+.. +.|+ |+ ++++++.++.+++| +.
T Consensus 257 l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred ccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 55667778886 9999 88 99999999999999 87
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=3.8e-14 Score=126.44 Aligned_cols=186 Identities=12% Similarity=0.102 Sum_probs=140.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
.+++|++++.++.|.+||.++++.+.+..... ...+.++.++|+|++|+ +.++.|..||. +++.+.......
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~--~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~--- 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK--GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA--- 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT--TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT---
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc--cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC---
Confidence 45789999999999999998997766544321 12578889999999888 45788999998 677654443211
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEEec-CCeEEEEECCCCeeeEEEec------cCCCeEEEEEecCCCCEEEE
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIYS 287 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~------~~~~v~~i~~~~~~~~~l~s 287 (491)
...+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++. ++++++++
T Consensus 76 ------------~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~ 141 (276)
T 3no2_A 76 ------------GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVP 141 (276)
T ss_dssp ------------TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEE
T ss_pred ------------CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceEC-CCCCEEEE
Confidence 115778899999999999887 788888886 6666665541 21234556675 78999999
Q ss_pred EeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 288 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
...++.|..||. .++.+..+... ..+.++...++|++++++..++.|..+|..++
T Consensus 142 ~~~~~~v~~~d~-----~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 142 LFATSEVREIAP-----NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp ETTTTEEEEECT-----TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred ecCCCEEEEECC-----CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 999999999997 46677666544 34556778899999999988889999998863
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=2.2e-14 Score=127.96 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=158.1
Q ss_pred CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
.+++|++++.++.|.+||.++++.......... ..+.++.++|+|++|+ +.++.|+.||. ++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------------WECNSVAATKAGEILF--SYSKGAKMITR-DG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---------------CCCCEEEECTTSCEEE--ECBSEEEEECT-TS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------------CCCcCeEECCCCCEEE--eCCCCEEEECC-CC
Confidence 467899999999999999989987655443210 1467889999999888 45778999999 88
Q ss_pred eeeEEEecc-CCCeEEEEEecCCCCEEEEEeC-CCeEEEEeCccccCCCcceeeec------cccccEEEEEEcCCCCEE
Q 011216 260 KLSLRILAH-TSDVNTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYL 331 (491)
Q Consensus 260 ~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~------~~~~~i~~i~~sp~~~~l 331 (491)
+.+..+..+ ...+.++.+. ++++++++.+. ++.|..+|. .++.+..+. .+......+++.++|+++
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-----~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-----KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp CEEEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-----TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred CEEEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-----CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 888888764 3578888887 88999998887 777877775 455544432 222345566789999999
Q ss_pred EEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCc
Q 011216 332 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 411 (491)
Q Consensus 332 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 411 (491)
++...++.|..||.. + +.+..+...... +.....++|+
T Consensus 140 v~~~~~~~v~~~d~~-G----------------------------------~~~w~~~~~~~~-------~~~~~~~~g~ 177 (276)
T 3no2_A 140 VPLFATSEVREIAPN-G----------------------------------QLLNSVKLSGTP-------FSSAFLDNGD 177 (276)
T ss_dssp EEETTTTEEEEECTT-S----------------------------------CEEEEEECSSCC-------CEEEECTTSC
T ss_pred EEecCCCEEEEECCC-C----------------------------------CEEEEEECCCCc-------cceeEcCCCC
Confidence 999999999999987 3 344444432111 1123446899
Q ss_pred EEEEEecCCeEEEEECCCccEEEEecCCC------CCeeeeEecCCCCeEEEEE
Q 011216 412 YIYTGSHDSCVYVYDLVSGEQVAALKYHT------SPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 412 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~~~~s~~~~~l~s~~ 459 (491)
++++++.++.|..+|..+|+.+..+..+. ..+..++..++|.++++..
T Consensus 178 ~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 178 CLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99999888899999999999998886432 2377888899998887763
No 194
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.67 E-value=9.3e-14 Score=127.61 Aligned_cols=291 Identities=14% Similarity=0.051 Sum_probs=187.2
Q ss_pred EEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe----------cCCeEE
Q 011216 130 SQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVH 194 (491)
Q Consensus 130 ~~~s~dg~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~----------~dg~i~ 194 (491)
....|+++.+.+... ++.|.+.|..+++.+........ + . ++++|||++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~---P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL---P-N-PVVADDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS---C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC---C-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence 345689988887765 67999999999977766544332 3 3 99999999988875 357899
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeEEEeccCCCe
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
+||..+.+......+...... ........++|+|||++++++.. ++.|.++|+.+++.+.++.-.. .
T Consensus 113 viD~~t~~v~~~I~v~~g~r~---------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~ 181 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRF---------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C 181 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCC---------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E
T ss_pred EEECCCCeEEEEEECCCcccc---------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c
Confidence 999999887665543210000 00002346899999999988864 6899999999999988874321 1
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc----cccEE-EEEE-cCCCCEEEEeeCCCcEEEeeCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGIT-FIDS-RGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~i~-~i~~-sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
...+ |...+.+++.+.||.+.+.++... ++.......+ ..++. ...| .++|++++ .+.+|.|.+.|+.
T Consensus 182 -~~~~-P~g~~~~~~~~~DG~~~~v~~~~~---g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~ 255 (386)
T 3sjl_D 182 -YHIF-PTAPDTFFMHCRDGSLAKVAFGTE---GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLS 255 (386)
T ss_dssp -EEEE-EEETTEEEEEETTSCEEEEECCSS---SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECT
T ss_pred -ceee-cCCCceeEEECCCCCEEEEECCCC---CeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECC
Confidence 2233 566778888889999999998621 2221111111 11221 1345 46776555 4557899999987
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcc---cceeeeeEEEEecCcccCCCcEEEEEec-----
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---HSVLRTLIRCHFSPVYSTGQKYIYTGSH----- 418 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~l~~g~~----- 418 (491)
+...... ..+..+.. ...... ......+++++++.+++...
T Consensus 256 ~~~~~v~-----------------------------~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 256 SGDAKFL-----------------------------PAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp TSSCEEC-----------------------------CCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTT
T ss_pred CCcceee-----------------------------cceeccccccccccccC--CCcceeeECCCCCeEEEEecccccc
Confidence 6321100 00000000 000000 00001134667888877653
Q ss_pred -----CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCC-eEEEEE-CCCcEEEecCCCCCC
Q 011216 419 -----DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGE 474 (491)
Q Consensus 419 -----dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~Dg~i~iw~~~~~~~ 474 (491)
.+.|.++|+.+++.+..+... ..+..|++++|++ +|+++. .++.|.++|..+++.
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 257999999999999888632 3688999999997 676654 589999999988764
No 195
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=5.3e-14 Score=129.41 Aligned_cols=260 Identities=10% Similarity=0.015 Sum_probs=172.6
Q ss_pred CCCeEEEEECCCCeEEEEEee---ccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccccccccc
Q 011216 144 QASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (491)
Q Consensus 144 ~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.++.|.+||..+++....... ..........+++. +++..++...++.|.+||..+++........
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---------- 83 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---------- 83 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC----------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC----------
Confidence 378999999999854432211 11222346777774 4555556666799999999998875543211
Q ss_pred CCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCeeeEEEeccC-----CCeEEEEEecCCCCEEEEEe-CCCe
Q 011216 221 ADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGS-DDNL 293 (491)
Q Consensus 221 ~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~l~s~s-~dg~ 293 (491)
.....++++++++ ++++. .++.|.+||..+++....+.... .....+++ .++.++++.. .++.
T Consensus 84 -------~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~ 153 (328)
T 3dsm_A 84 -------TSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNR 153 (328)
T ss_dssp -------SSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCE
T ss_pred -------CCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCE
Confidence 1577899999985 55554 78999999999998877665332 14567777 3444444443 4889
Q ss_pred EEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC----------CcEEEeeCCCCCCccccccCccccee
Q 011216 294 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------QAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
|.++|.. ..+.+..+... .....++++|+|++++++..+ +.|.++|..+.
T Consensus 154 v~viD~~----t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~--------------- 213 (328)
T 3dsm_A 154 ILKIDTE----TDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF--------------- 213 (328)
T ss_dssp EEEEETT----TTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------------
T ss_pred EEEEECC----CCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---------------
Confidence 9999987 55555555432 334678899999977776654 78999998763
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEE--ecCCCC
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA--LKYHTS 441 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~h~~ 441 (491)
+....+..... .....++++|+++.|+++.. .|++||..+++.... +..+..
T Consensus 214 -------------------~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~ 267 (328)
T 3dsm_A 214 -------------------TVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDT 267 (328)
T ss_dssp -------------------EEEEEEECCTT-----CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSS
T ss_pred -------------------eEEEEEecCCC-----CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCC
Confidence 22222221100 01133467888999988765 899999988875421 222245
Q ss_pred CeeeeEecCC-CCeEEEE----ECCCcEEEecCC
Q 011216 442 PVRDCSWHPS-QPMLVSS----SWDGDVVRWEFP 470 (491)
Q Consensus 442 ~v~~~~~s~~-~~~l~s~----~~Dg~i~iw~~~ 470 (491)
....++++|+ +.++++. ..++.|.+|+..
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 6889999995 5555555 568999999987
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.1e-13 Score=127.68 Aligned_cols=205 Identities=12% Similarity=0.107 Sum_probs=142.6
Q ss_pred cccCCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC----CeEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVH 194 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d----g~i~ 194 (491)
.+..+...+.+++|+|+|++++++..++.|.+||..++...... . .+...+.+++++|+++++++...+ +.|.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-e--CCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 44556677899999999998888888999999999887443322 1 233469999999999877777666 6899
Q ss_pred EEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec------CCeEEEEECCCCeeeEEEecc
Q 011216 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAH 268 (491)
Q Consensus 195 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~ 268 (491)
+||..++......... .+...+.+++++|+|+++++... .+.|+.+|..+++... +..+
T Consensus 116 ~~d~~~~~~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 180 (333)
T 2dg1_A 116 AATENGDNLQDIIEDL--------------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQN 180 (333)
T ss_dssp EECTTSCSCEEEECSS--------------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEE
T ss_pred EEeCCCCEEEEEEccC--------------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecC
Confidence 9998877653221100 01226889999999987776543 3567777766555432 3334
Q ss_pred CCCeEEEEEecCCCCEE-EEEeCCCeEEEEeCccccCCCccee--------eeccccccEEEEEEcCCCCEEEEeeCCCc
Q 011216 269 TSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAG--------VLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~i~~i~~sp~~~~l~~~~~dg~ 339 (491)
...+..++|+ ++++.| ++.+.++.|.+||+... +.... .+.++ ..+..++++++|+++++...++.
T Consensus 181 ~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 181 ISVANGIALS-TDEKVLWVTETTANRLHRIALEDD---GVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp ESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTT---SSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCC---CcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE
Confidence 4567899998 677644 55566889999998521 11111 11122 35778999999998888777889
Q ss_pred EEEeeCC
Q 011216 340 IKLWDIR 346 (491)
Q Consensus 340 i~iwd~~ 346 (491)
|.+||..
T Consensus 256 v~~~d~~ 262 (333)
T 2dg1_A 256 VLVFNKR 262 (333)
T ss_dssp EEEECTT
T ss_pred EEEECCC
Confidence 9999974
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=2.4e-14 Score=127.90 Aligned_cols=241 Identities=10% Similarity=0.028 Sum_probs=160.6
Q ss_pred ceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc
Q 011216 126 RAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (491)
...+++++++|++++ +...++.|.+|+..+... ... .......+.+++++++++++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~--~~~-~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT--TVL-PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------EEC-CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc--ceE-eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999999777 546788999999765422 111 122223578899999998555554 889999998765432
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCE
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 284 (491)
.... . ....+..+++.++|+.+++...++.|.+|+..+.............+.++++. +++++
T Consensus 101 ~~~~-~---------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l 163 (270)
T 1rwi_B 101 VLPF-D---------------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNV 163 (270)
T ss_dssp ECCC-C---------------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCE
T ss_pred eeec-C---------------CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCE
Confidence 2110 0 11257899999999977777778899999876554432222333467889997 67787
Q ss_pred EEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceee
Q 011216 285 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 364 (491)
Q Consensus 285 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 364 (491)
+++...++.|.+||.. ..........+...+..++++++|.++++...++.|.+||......
T Consensus 164 ~v~~~~~~~i~~~~~~----~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~-------------- 225 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAE----SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-------------- 225 (270)
T ss_dssp EEEEGGGTEEEEECTT----TCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC--------------
T ss_pred EEEECCCCEEEEEecC----CCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc--------------
Confidence 7777778899999985 3222222223336688999999998777777788999999865211
Q ss_pred ceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
..... ... .....++++++|+++++...++.|+++++...+
T Consensus 226 ---------------------~~~~~-~~~----~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 226 ---------------------TVLPF-TGL----NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ---------------------EECCC-CSC----SCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ---------------------eeecc-CCC----CCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 11000 000 111233567789988888889999999987654
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.65 E-value=2.6e-14 Score=146.62 Aligned_cols=277 Identities=15% Similarity=0.096 Sum_probs=172.5
Q ss_pred cCCCCEEEEEECCCe---EEEEE--CC---CCeEEEEEe----eccCCceeEEEeEeCCCCceEEEEecC-----CeEEE
Q 011216 133 SADGSLFVAGFQASQ---IRIYD--VE---RGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHI 195 (491)
Q Consensus 133 s~dg~~l~~~~~dg~---i~vw~--~~---~~~~~~~~~----~~~~~~~~v~~l~~sp~~~~l~~~~~d-----g~i~i 195 (491)
+|||++++....++. -.+|. .. .+. ...++ ....+...+..++|||||++|+.++.+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTK-GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCC-CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCC-CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 489998886654432 44454 43 332 22221 122334578899999999999987654 46999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe--------------EEEEECCCCee
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC--------------IYVYDLEANKL 261 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~--------------i~vwd~~~~~~ 261 (491)
||+.+++..... . +...+..++|+|| +.|+.++.++. |++|++.++..
T Consensus 194 ~dl~tg~~~~~~-~----------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~ 255 (741)
T 1yr2_A 194 VGVADGKPLADE-L----------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS 255 (741)
T ss_dssp EETTTCCEEEEE-E----------------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG
T ss_pred EECCCCCCCCcc-C----------------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch
Confidence 999998864321 0 0112356899999 98988876553 99999987653
Q ss_pred --eEEEe--ccCCCeEEEEEecCCCCEEEEEeCC-----CeEEEEeCccccCCC--cceeeeccccccEEEEEEcCCCCE
Q 011216 262 --SLRIL--AHTSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKG--KPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 262 --~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
...+. .+...+..+.|+ +++++|+..+.+ ..|.+||+. .+ .....+..+...+.... +|+|+.
T Consensus 256 ~~~lv~~~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~~~~-~~dg~~ 329 (741)
T 1yr2_A 256 ADQPVFATPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVT----NGKIGPVTALIPDLKAQWDFV-DGVGDQ 329 (741)
T ss_dssp GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEE----TTEECCCEEEECSSSSCEEEE-EEETTE
T ss_pred hCEEEeccCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECC----CCCCcccEEecCCCCceEEEE-eccCCE
Confidence 22222 233458899998 788887777654 389999986 33 21344544555554443 488988
Q ss_pred EEEeeCC----CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 331 LISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 331 l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
|+..+.+ +.|.+||+.+.. . .....+..+.. .+... .+
T Consensus 330 l~~~s~~~~~~~~l~~~d~~~~~--~------------------------------~~~~l~~~~~~--~l~~~----~~ 371 (741)
T 1yr2_A 330 LWFVSGDGAPLKKIVRVDLSGST--P------------------------------RFDTVVPESKD--NLESV----GI 371 (741)
T ss_dssp EEEEECTTCTTCEEEEEECSSSS--C------------------------------EEEEEECCCSS--EEEEE----EE
T ss_pred EEEEECCCCCCCEEEEEeCCCCc--c------------------------------ccEEEecCCCC--eEEEE----EE
Confidence 8877654 459999987521 0 01111111111 11111 22
Q ss_pred cCCCcEEEEEecCCeEEEEECC-CccEEEEecC-CCCCeeeeEecCCCCeEEEE-E---CCCcEEEecCCCCC
Q 011216 407 STGQKYIYTGSHDSCVYVYDLV-SGEQVAALKY-HTSPVRDCSWHPSQPMLVSS-S---WDGDVVRWEFPGNG 473 (491)
Q Consensus 407 s~~~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~-~---~Dg~i~iw~~~~~~ 473 (491)
+ ++.++++...|+..+||.+. +++.+..+.. +.+.+..++++|+++.|+.. + ..+.|++||+.++.
T Consensus 372 ~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 372 A-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp E-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred E-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2 56788888889877766543 4666666664 36778899999999866533 2 34789999987654
No 199
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.64 E-value=1.1e-13 Score=129.44 Aligned_cols=290 Identities=12% Similarity=0.020 Sum_probs=186.0
Q ss_pred CCCCEEEEEECC-----CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe----------cCCeEEEEEC
Q 011216 134 ADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDV 198 (491)
Q Consensus 134 ~dg~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~----------~dg~i~iwd~ 198 (491)
++++++.+.... +.|.++|..+++.+..+..... + .++++||+++|+++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~---P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL---P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS---C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC---C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 466666655442 6999999999977776554432 3 799999999998876 3678999999
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeEEEeccCCCeEEEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~i~ 276 (491)
.+.+......+..... + ........+.|+|||++++++.. ++.|.+.|+.+++.+.++.-.. . ..
T Consensus 157 ~t~~vv~~I~v~g~~r---~------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~ 223 (426)
T 3c75_H 157 VTFLPIADIELPDAPR---F------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YH 223 (426)
T ss_dssp TTCCEEEEEEETTCCC---C------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EE
T ss_pred CCCcEEEEEECCCccc---c------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--ee
Confidence 9988765554320000 0 00002335799999999999874 5789999999999888775321 1 22
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCCCcceee----eccccccE-EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI-TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~i-~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
..|...+.+++.+.||.+.+.+.. .++.... +.....++ ..+.+.+++..++.....+.+.+.|+......
T Consensus 224 ~~p~g~~~~v~~~~dG~~~~V~~~----~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~ 299 (426)
T 3c75_H 224 IFPASPTVFYMNCRDGSLARVDFA----DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT 299 (426)
T ss_dssp EEEEETTEEEEEETTSSEEEEECC----TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred eccCCCcEEEEEcCCCCEEEEECC----CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE
Confidence 233445677777788888877774 2222211 11111111 13567888888877778889999998652210
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccc-eeeeeEEEEecCcccCCCcEEEEEec----------CC
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRCHFSPVYSTGQKYIYTGSH----------DS 420 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg 420 (491)
.. .......... ............+++|+++.+++... ++
T Consensus 300 v~-----------------------------~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 300 FR-----------------------------APIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp EC-----------------------------CCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred Ee-----------------------------eeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence 00 0000000000 00000000011256778887777653 35
Q ss_pred eEEEEECCCccEEEEecCCCCCeeeeEecCCCC-eEEEEE-CCCcEEEecCCCCCCC
Q 011216 421 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~-~Dg~i~iw~~~~~~~~ 475 (491)
.|.++|+.+++.+..+.... ....++|+||++ +|+++. .++.|.++|+.+.+..
T Consensus 351 ~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 351 FVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 79999999999999886322 478999999999 888888 5999999999887644
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.62 E-value=9e-14 Score=142.61 Aligned_cols=202 Identities=13% Similarity=0.087 Sum_probs=133.7
Q ss_pred CCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe-----
Q 011216 123 TTSRAYVSQFSADGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI----- 192 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~----- 192 (491)
|...+..++|||||++||.+..+ ..|++||+.+++.+.... ....+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 34478899999999999987654 469999999986654311 1112357899999 99998887653
Q ss_pred ---------EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC-----eEEEEECCC
Q 011216 193 ---------VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEA 258 (491)
Q Consensus 193 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg-----~i~vwd~~~ 258 (491)
|.+|++.++.......... ..+...+..+.|+|||++|+..+.++ .|++||+.+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~ 303 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFAT------------PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN 303 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECC------------TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET
T ss_pred cccCCCCCEEEEEECCCCchhCEEEecc------------CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC
Confidence 8899987765322111110 01222478899999999998877544 899999988
Q ss_pred C--eeeEEEeccCCCeEEEEEecCCCCEEEEEeC----CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEE
Q 011216 259 N--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 259 ~--~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~ 332 (491)
+ +....+..+...+....+ ++++.|+..+. ++.|.+||+.... ......+..+...+..++++ ++.+++
T Consensus 304 ~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~ 378 (741)
T 1yr2_A 304 GKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFA 378 (741)
T ss_dssp TEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEE
T ss_pred CCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEE
Confidence 7 314555556555555543 45666766665 3459999986211 22333344444556677887 566778
Q ss_pred EeeCCCcEEEeeCC
Q 011216 333 SNGKDQAIKLWDIR 346 (491)
Q Consensus 333 ~~~~dg~i~iwd~~ 346 (491)
+...|+..+||.+.
T Consensus 379 ~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 379 SYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEe
Confidence 88888887777554
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=4.7e-13 Score=122.36 Aligned_cols=248 Identities=12% Similarity=0.129 Sum_probs=161.0
Q ss_pred eEEEeEeCCCCceEEE-------EecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEE
Q 011216 171 TVTDTSLSPDQRHLVY-------ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GREL 242 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l 242 (491)
...+++|+++++++++ ...++.|.+||..+++...... .. ..++...+.+++++++ ++ |
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~-----------~~~~~~~~~~i~~~~~~g~-l 85 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PE-----------VNGYGGIPAGCQCDRDANQ-L 85 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CE-----------ETTEECCEEEEEECSSSSE-E
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cc-----------cCCCCCCCceEEEecCCCc-E
Confidence 4678999999987777 5678899999988776533211 00 0123346889999999 65 4
Q ss_pred EEEecCCeEEEEECCCCeeeEE-Eec----cCCCeEEEEEecCCCCEEEEEeCC---------------CeEEEEeCccc
Q 011216 243 VAGSSDDCIYVYDLEANKLSLR-ILA----HTSDVNTVCFGDESGHLIYSGSDD---------------NLCKVWDRRCL 302 (491)
Q Consensus 243 ~~~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~i~~~~~~~~~l~s~s~d---------------g~i~iwd~~~~ 302 (491)
++++..+.|.+||.. ++.... ... ....+.++++. ++++++++...+ +.|..||..
T Consensus 86 ~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 161 (314)
T 1pjx_A 86 FVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-- 161 (314)
T ss_dssp EEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--
T ss_pred EEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC--
Confidence 444445579999998 665322 211 12357899997 678877776654 466666642
Q ss_pred cCCCcceeeeccccccEEEEEEc----CCCCEEEEe-eCCCcEEEeeCCC-CCCccccccCcccceeeceeecCCCCccc
Q 011216 303 NVKGKPAGVLMGHLEGITFIDSR----GDGRYLISN-GKDQAIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~i~~s----p~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
+. ...+..+......++++ |+++.|+.+ ..++.|.+||+.. .....
T Consensus 162 ---g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~------------------------ 213 (314)
T 1pjx_A 162 ---GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN------------------------ 213 (314)
T ss_dssp ---SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE------------------------
T ss_pred ---CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc------------------------
Confidence 22 22233344556889999 999766554 5678899999752 10000
Q ss_pred ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEE
Q 011216 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 456 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 456 (491)
......+..+.. .....++++++|++.++...++.|.+||..+++.+..+..+...+.+++|+|+++.|+
T Consensus 214 -----~~~~~~~~~~~~-----~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 214 -----KKVWGHIPGTHE-----GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp -----EEEEEECCCCSS-----CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred -----ceEEEECCCCCC-----CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 001111111100 0112235677898888877889999999987887777776767899999999999554
Q ss_pred -EEECCCcEEEecCCCCC
Q 011216 457 -SSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 457 -s~~~Dg~i~iw~~~~~~ 473 (491)
+...++.|..|++....
T Consensus 284 v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 284 VTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEETTTTEEEEEECSSCB
T ss_pred EEeCCCCeEEEEeCCCCC
Confidence 44566889999987543
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=7.3e-12 Score=113.41 Aligned_cols=237 Identities=9% Similarity=0.035 Sum_probs=161.6
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
..+.+++++++|+.+++...++.|.+||.. +....... .. +...+.++++.++|..+++...++
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-~~--------------~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL-PT--------------PDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC-SS--------------TTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC-Cc--------------ccCceeeEEECCCCCEEEeCCCCC
Confidence 468999999999977766667899999987 54322111 00 112688999999999777776688
Q ss_pred eEEEEECCCCeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCC
Q 011216 250 CIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~ 327 (491)
.|..||.. ++. ..+. .....+.++++. ++++++++...++.|..||.. ..............+..+++.++
T Consensus 79 ~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~----g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 79 KIGRITKK-GII-KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDD----GKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp EEEEECTT-SCE-EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT----CCEEEEECSSTTCCEEEEEECTT
T ss_pred eEEEECCC-CcE-EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECCC----CCEEEecCCCCCCCCceEEEcCC
Confidence 99999986 332 2222 245678999997 678888887778899999873 11111122234456889999999
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
|+++++...++.|..||. +.. +..+........ ...++++
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~-----------------------------------~~~~~~~~~~~~----~~~i~~~ 191 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGD-----------------------------------ITEFKIPTPASG----PVGITKG 191 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCC-----------------------------------EEEEECSSTTCC----EEEEEEC
T ss_pred CCEEEEeCCCCEEEEEcC-CCc-----------------------------------EEEeeCCCCCCc----ceeEEEC
Confidence 988887777788999998 421 111110000011 1223556
Q ss_pred CCCcEEEEEecCCeEEEEECCCccEEEE-ecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 408 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
++|++.++...++.|.+||. +++.... +..+...+.+++++++|.++++...++.|.+|+..
T Consensus 192 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 192 NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 68887777666889999999 6664432 33455678999999999877766577889999973
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=9.4e-13 Score=120.96 Aligned_cols=258 Identities=15% Similarity=0.144 Sum_probs=165.9
Q ss_pred EEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeeccCC----ceeEEEeEeCCCCceEEEEec--CCeE
Q 011216 130 SQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPIV 193 (491)
Q Consensus 130 ~~~s~dg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~~~~~--dg~i 193 (491)
+++||||++|+++. .++.|.+||..+.+.+..+....+. ......++|+|||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999887765 3678999999998777665443210 113456899999999998864 6899
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC-CeeeEEEecc----
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAH---- 268 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~---- 268 (491)
.++|+.+++......... . ...+....+.+++.+.||.+.+.++.. ++.......+
T Consensus 163 sVID~~t~~vv~tI~v~g------------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD------------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp EEEETTTTEEEEEEECCS------------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred EEEECCCCcEEEEEECCC------------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 999999998766554321 1 112223445667777788888888765 4442211111
Q ss_pred CCCe-EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec----------cccccEEEEEEcCCCCEEEEeeC-
Q 011216 269 TSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGDGRYLISNGK- 336 (491)
Q Consensus 269 ~~~v-~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~i~~i~~sp~~~~l~~~~~- 336 (491)
..++ ....|.++++++++ .+.+|.|.+.|..... .+....+. -..+....++++++++.+++...
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~--~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD--AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS--CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc--ceeecceeccccccccccccCCCcceeeECCCCCeEEEEecc
Confidence 1222 12466546675554 5668999999985221 01111111 01233445778999888877643
Q ss_pred ---------CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 337 ---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 337 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
.+.|.+.|+.+. +.+..+... ...+++.++
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~----------------------------------kv~~~i~vg-------~~~~~lavs 339 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTG----------------------------------ERLAKFEMG-------HEIDSINVS 339 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEEC
T ss_pred ccccccCCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcceEEEC
Confidence 246899999883 334443321 123456788
Q ss_pred CCCc-EEEEEec-CCeEEEEECCCccEEEEecCCCCCeeeeEecCC
Q 011216 408 TGQK-YIYTGSH-DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 451 (491)
Q Consensus 408 ~~~~-~l~~g~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~ 451 (491)
+|++ +|++.+. ++.|.++|..+++.+.++..- +.-+.+.+++|
T Consensus 340 ~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 8987 6776554 899999999999999998733 34466777766
No 204
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=1.4e-12 Score=119.83 Aligned_cols=248 Identities=9% Similarity=-0.019 Sum_probs=162.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (491)
.....+++. ++++.++...++.|.+||..+++.+..... ...+..++++++++..++...++.|.+||..+++..
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 345677774 445556666689999999999876665421 235889999999854444447899999999988765
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe--cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCC
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~ 282 (491)
......... +.......+++ ++..|+++. .++.|.++|+.+++....+.. ......+.+. +++
T Consensus 119 ~~i~~g~~~-----------~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~-~dG 183 (328)
T 3dsm_A 119 GYIECPDMD-----------MESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMD-KYN 183 (328)
T ss_dssp EEEECTTCC-----------TTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEEC-TTS
T ss_pred EEEEcCCcc-----------ccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEc-CCC
Confidence 443322100 00112334566 344555554 488999999999988777754 3345788887 778
Q ss_pred CEEEEEeCC----------CeEEEEeCccccCCCcceeeeccc-cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 283 HLIYSGSDD----------NLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 283 ~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
++++++..+ +.|.++|.. ..+....+... ......++++|+++.|+++.. .|.+||..+....
T Consensus 184 ~l~v~~~~~~~~~~~~~~~~~v~~id~~----t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 184 KMWTITDGGYEGSPYGYEAPSLYRIDAE----TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp EEEEEBCCBCTTCSSCBCCCEEEEEETT----TTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred CEEEEECCCccCCccccCCceEEEEECC----CCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 777776654 789999986 55555444322 236789999999998887754 8999998774321
Q ss_pred cccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccC-CCcEEEEE----ecCCeEEEEE
Q 011216 352 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTG----SHDSCVYVYD 426 (491)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g----~~dg~i~iwd 426 (491)
... . +... ......++++| ++.+.++. ..++.|.+||
T Consensus 258 ~~~------------------------------~--~~~~------~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 258 VRP------------------------------F--LEFR------DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SSC------------------------------S--BCCC------SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred eee------------------------------e--ecCC------CCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 100 0 0000 01122345676 45555555 5688999999
Q ss_pred CCCccEEEEec
Q 011216 427 LVSGEQVAALK 437 (491)
Q Consensus 427 ~~~~~~~~~~~ 437 (491)
.. ++.+..+.
T Consensus 300 ~~-g~~~~~i~ 309 (328)
T 3dsm_A 300 PQ-GKLIDEFY 309 (328)
T ss_dssp TT-CCEEEEEE
T ss_pred CC-CCEEEEEE
Confidence 97 98888776
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.56 E-value=8.5e-12 Score=113.97 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=135.0
Q ss_pred CCceEEEEEcCCCCEEEE-------EECCCeEEEEECCCCeEEEEEe-eccCCceeEEEeEeCCC-CceEEEEecCCeEE
Q 011216 124 TSRAYVSQFSADGSLFVA-------GFQASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSPD-QRHLVYASMSPIVH 194 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~-------~~~dg~i~vw~~~~~~~~~~~~-~~~~~~~~v~~l~~sp~-~~~l~~~~~dg~i~ 194 (491)
-....+++|+++|+++++ +..++.|.+||..++....... ....+...+..++++++ ++++++ +..+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence 345678999999998888 6778899999987774432111 00123346889999999 665544 4455799
Q ss_pred EEECCCCccccc-cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC---------------CeEEEEECCC
Q 011216 195 IVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------------DCIYVYDLEA 258 (491)
Q Consensus 195 iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d---------------g~i~vwd~~~ 258 (491)
+||.+ ++.... ..... ......+.++++.++|+++++...+ +.|..||..
T Consensus 96 ~~d~~-g~~~~~~~~~~~------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSE------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp EEETT-SCEEECCSBCTT------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred EEeCC-CCEEEEEeccCC------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 99988 665333 21100 0111257889999999877776554 568888876
Q ss_pred CeeeEEEeccCCCeEEEEEe----cCCCCEEEEEeCCCeEEEEeCccccCCCc-----ceeeecccc-ccEEEEEEcCCC
Q 011216 259 NKLSLRILAHTSDVNTVCFG----DESGHLIYSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHL-EGITFIDSRGDG 328 (491)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~-~~i~~i~~sp~~ 328 (491)
++.. .+..+......++++ +....++++...++.|.+||+.. .+. ....+..+. ..+..++++++|
T Consensus 162 g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 162 GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCSSCEEEEEEEBTTC
T ss_pred CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCCCCCCCceEECCCC
Confidence 5443 333344556888986 43334455556788999999751 111 222333333 557889999999
Q ss_pred CEEEEeeCCCcEEEeeCCC
Q 011216 329 RYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 329 ~~l~~~~~dg~i~iwd~~~ 347 (491)
+++++...++.|.+||..+
T Consensus 238 ~l~v~~~~~~~i~~~d~~~ 256 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp CEEEEEETTTEEEEECTTC
T ss_pred CEEEEEcCCCEEEEEcCCC
Confidence 9888887888999999874
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.54 E-value=3.1e-12 Score=120.93 Aligned_cols=201 Identities=10% Similarity=0.077 Sum_probs=136.7
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC--eEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg--~i~iwd~~~~ 201 (491)
-.....++|+++|+++++...++.|++||..++.... .... . . ... ++|+|+++.|+++..++ .|.+|+..++
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~-~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-F-K-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-C-C-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-C-C-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 3467899999999988887778999999998874332 2222 1 1 233 99999999999888766 7888887655
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEE----EeccCCCe--EEE
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDV--NTV 275 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~v--~~i 275 (491)
........... .....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..+
T Consensus 205 ~~~~~~g~~~~------------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 205 WAPTRIGQLGS------------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp TCEEEEEECCT------------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred ceeEEeeeccc------------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 43211100000 0112467789999555566677789999999987764322 11222222 399
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc---------------cccEEEEEEcCCCCEEEEee-CCCc
Q 011216 276 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------------LEGITFIDSRGDGRYLISNG-KDQA 339 (491)
Q Consensus 276 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------------~~~i~~i~~sp~~~~l~~~~-~dg~ 339 (491)
+|+|.++.++++-..++.|+.|+.. +. +..+.++ ......++++|+|+++++-. .++.
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~-----g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~ 346 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPD-----GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC 346 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-----CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecC-----CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE
Confidence 9985467777777788999999974 22 2222222 23478999999999777777 7889
Q ss_pred EEEeeCCC
Q 011216 340 IKLWDIRK 347 (491)
Q Consensus 340 i~iwd~~~ 347 (491)
|+.||+.+
T Consensus 347 I~~~~~~~ 354 (409)
T 3hrp_A 347 LRKLDILD 354 (409)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999755
No 207
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.54 E-value=2.4e-12 Score=130.77 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=134.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC-----
Q 011216 122 QTTSRAYVSQFSADGSLFVAGF-----QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----- 191 (491)
Q Consensus 122 ~h~~~v~~~~~s~dg~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg----- 191 (491)
+|...+..++|||||++||.+. ....|++||+.+++.+..... . .....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--D--VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--E--EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--C--ceeccEEEe-CCCEEEEEEecCccccc
Confidence 4667899999999999998543 335799999999865543211 1 013568999 999999988774
Q ss_pred --------eEEEEECCCCccccccceeccccccccccCCCCC-ceecEEEEEEcCCCCEEEEEec----CCeEEEEECCC
Q 011216 192 --------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG-YSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEA 258 (491)
Q Consensus 192 --------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~i~~s~~~~~l~~~~~----dg~i~vwd~~~ 258 (491)
.|++|++.++......-... .. |......+.|+|||++|+.... ...|+++|+.+
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~------------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGA------------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESC------------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred ccccCCCcEEEEEECCCCcccceEEEec------------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 49999988765422211111 01 2224678899999998866543 35899999987
Q ss_pred Ce-eeEEEeccCCCeEEEEEecCCCCEEEEEeCC---CeEEEEeCccccCCCcc--eeeeccccccEEEEEEcCCCCEEE
Q 011216 259 NK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKP--AGVLMGHLEGITFIDSRGDGRYLI 332 (491)
Q Consensus 259 ~~-~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~--~~~~~~~~~~i~~i~~sp~~~~l~ 332 (491)
+. ....+..+....... +++.++.+++....+ +.|..+|+. .+.. ...+..|...+. .|+++++.|+
T Consensus 269 ~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~----~~~~~~~~~l~~~~~~~~--~~s~~g~~lv 341 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA----NPGPAHWRDLIPERQQVL--TVHSGSGYLF 341 (693)
T ss_dssp TTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT----SCCGGGCEEEECCCSSCE--EEEEETTEEE
T ss_pred CCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC----CCCccccEEEecCCCCEE--EEEEECCEEE
Confidence 64 345566666666555 543555555555544 578899986 3222 234555666554 8899998887
Q ss_pred EeeCCC---cEEEeeCCC
Q 011216 333 SNGKDQ---AIKLWDIRK 347 (491)
Q Consensus 333 ~~~~dg---~i~iwd~~~ 347 (491)
....++ .|++||+..
T Consensus 342 ~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 342 AEYMVDATARVEQFDYEG 359 (693)
T ss_dssp EEEEETTEEEEEEECTTS
T ss_pred EEEEECCeeEEEEEECCC
Confidence 766544 688888764
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.54 E-value=6e-12 Score=113.95 Aligned_cols=229 Identities=8% Similarity=0.045 Sum_probs=147.3
Q ss_pred eEEEeEeCCCCc-eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~l~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
-..+..|+|++. ++++...++.|..||..++..... .. ...+.+++++++|++++ +. ++
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~~~~i~~~~dG~l~v-~~-~~ 73 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TM-----------------DAPVSSVALRQSGGYVA-TI-GT 73 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-EC-----------------SSCEEEEEEBTTSSEEE-EE-TT
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eC-----------------CCceEEEEECCCCCEEE-EE-CC
Confidence 356788999654 555555678999999987764211 11 12688999999999544 44 56
Q ss_pred eEEEEECCCCeeeEEEec----cCCCeEEEEEecCCCCEEEEEeCC---------CeEEEEeCccccCCCcceeeecccc
Q 011216 250 CIYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLIYSGSDD---------NLCKVWDRRCLNVKGKPAGVLMGHL 316 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 316 (491)
.|.+||..+++....... ....++.+++. ++++++++.... ..-.+|.+. .......+..+.
T Consensus 74 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d----~~g~~~~~~~~~ 148 (297)
T 3g4e_A 74 KFCALNWKEQSAVVLATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLF----PDHHVKKYFDQV 148 (297)
T ss_dssp EEEEEETTTTEEEEEEECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEEC----TTSCEEEEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEE----CCCCEEEEeecc
Confidence 799999988775433221 12347889997 778876654321 233455543 112222333344
Q ss_pred ccEEEEEEcCCCCEEE-EeeCCCcEEEeeCC--CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce
Q 011216 317 EGITFIDSRGDGRYLI-SNGKDQAIKLWDIR--KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 317 ~~i~~i~~sp~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
.....++|+|+++.|+ +.+.++.|.+||+. +..... .+.+..+....
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------------------------~~~~~~~~~~~- 198 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------------------------RRSVYKLEKEE- 198 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------------------------EEEEEECCGGG-
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------------------------cEEEEECCCCC-
Confidence 5678899999998765 45557889999874 211000 01111111111
Q ss_pred eeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEec-CCCCeEEEEE
Q 011216 394 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSS 459 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~ 459 (491)
.....++++++|++.++...++.|..||..+++.+..+..+...+++++|. |+++.|+.++
T Consensus 199 -----~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 199 -----QIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp -----CEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred -----CCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 011233567789888777778899999999999999988777789999998 8888665544
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=5.5e-11 Score=110.78 Aligned_cols=242 Identities=11% Similarity=0.038 Sum_probs=155.4
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeec-cCC---ceeEEEeEeCCCCceEEEEec--CCe
Q 011216 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KSL---RWTVTDTSLSPDQRHLVYASM--SPI 192 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~-~~~---~~~v~~l~~sp~~~~l~~~~~--dg~ 192 (491)
.++|||||++|+++. .++.|.+||..+.+.+...... ... ......++|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999887665554332 000 113457999999999999874 478
Q ss_pred EEEEECCCCccccc-cceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEEe----
Q 011216 193 VHIVDVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---- 266 (491)
Q Consensus 193 i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~---- 266 (491)
|.++| .+++.... .... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 150 v~viD-~t~~~~~~~i~~~--------------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~ 207 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP--------------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAM 207 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC--------------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccc
Confidence 99999 88876543 3211 124455554 45666778999999999 776653321
Q ss_pred -ccCCCe-EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc----------ccccEEEEEEcCCCCEEEEe
Q 011216 267 -AHTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 267 -~~~~~v-~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~i~~i~~sp~~~~l~~~ 334 (491)
....++ ....+.+.++.+++. +..+.+.+.|+.... ...+..+.. .......+.++|+++.+++.
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~--~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAG--ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred ccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCc--ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence 111121 234555333444444 467899999985211 011111110 12234457889998887775
Q ss_pred eC----------CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecC
Q 011216 335 GK----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 404 (491)
Q Consensus 335 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (491)
.. ++.|.++|+.+. +.+..+.... ..+.+
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~----------------------------------~vv~~i~~g~-------~p~~i 323 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVG----------------------------------QTSSQISLGH-------DVDAI 323 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCC----------------------------------EEEEEEECCC-------CcCeE
Confidence 43 357999998873 3334443221 13455
Q ss_pred cccCCCc-EEEEEe-cCCeEEEEECCCccEEEEe
Q 011216 405 VYSTGQK-YIYTGS-HDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 405 ~~s~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~ 436 (491)
.|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 7888999 777777 4899999999999999884
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.52 E-value=2.5e-12 Score=121.63 Aligned_cols=239 Identities=10% Similarity=0.148 Sum_probs=157.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC-
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD- 249 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg- 249 (491)
....++|+|+++++++...++.|++||..++.......... ... ++|+++++.|+++..++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-----------------~~~-ia~~~~g~~l~~~d~~~~ 193 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-----------------GGK-PAVTKDKQRVYSIGWEGT 193 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-----------------BCB-CEECTTSSEEEEEBSSTT
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-----------------CCc-eeEecCCCcEEEEecCCC
Confidence 57899999999977777777899999998877654332110 223 89999999988888765
Q ss_pred -eEEEEECCCCeeeEEE----eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee----eccccccE-
Q 011216 250 -CIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV----LMGHLEGI- 319 (491)
Q Consensus 250 -~i~vwd~~~~~~~~~~----~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~i- 319 (491)
.|.+++...+.....+ ......+.+++++|.++. |+.+..++.|+.||.. ....... ..++...-
T Consensus 194 ~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~----~~~~~~~~~~~~~g~~~~~P 268 (409)
T 3hrp_A 194 HTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVK----TQEVTLIKQLELSGSLGTNP 268 (409)
T ss_dssp CEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETT----TCCEEEEEECCCCSCCCCSS
T ss_pred ceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECC----CCCEEEEecccccCCCCCCc
Confidence 8999998766543333 224566789999843555 4457778899999986 2222111 11221111
Q ss_pred -EEEEEcCC-CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccc-----
Q 011216 320 -TFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----- 392 (491)
Q Consensus 320 -~~i~~sp~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 392 (491)
..++|+|+ +.++++...++.|+.|+.... +..+.++.
T Consensus 269 ~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~------------------------------------~~~~~g~~~~~g~ 312 (409)
T 3hrp_A 269 GPYLIYYFVDSNFYMSDQNLSSVYKITPDGE------------------------------------CEWFCGSATQKTV 312 (409)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEECTTCC------------------------------------EEEEEECTTCCSC
T ss_pred cccEEEeCCCCEEEEEeCCCCEEEEEecCCC------------------------------------EEEEEeCCCCCCc
Confidence 38999995 556666667788999987642 11111100
Q ss_pred -e---eeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECCCccEEEEecCC---------------CCCeeeeEecCCC
Q 011216 393 -V---LRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYH---------------TSPVRDCSWHPSQ 452 (491)
Q Consensus 393 -~---~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h---------------~~~v~~~~~s~~~ 452 (491)
. ..........++++++|+++++-. .++.|+.||+.+++.. .+.++ -.....+++++++
T Consensus 313 ~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 313 QDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEG 391 (409)
T ss_dssp BCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS
T ss_pred CCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCC
Confidence 0 000001123346777899777777 7899999998777643 33333 1357899999998
Q ss_pred CeEEEEECCCcEEEecC
Q 011216 453 PMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 453 ~~l~s~~~Dg~i~iw~~ 469 (491)
.++++-..++.|+.+++
T Consensus 392 ~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEESTTCEEEEEEE
T ss_pred CEEEEECCCCeEEEEEe
Confidence 88887778888888765
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.49 E-value=2.4e-10 Score=103.43 Aligned_cols=237 Identities=9% Similarity=0.018 Sum_probs=160.3
Q ss_pred eeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
..+.++++.++++..++...++.|.+||.. ++.... ... .+...+.++++.++++.+++...++
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~~~--------------~~~~~~~~i~~~~~g~l~v~~~~~~ 83 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF-EVP--------------TPDAKVMCLIVSSLGDIWFTENGAN 83 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-ECS--------------STTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE-ECC--------------CCCCcceeEEECCCCCEEEEecCCC
Confidence 368899999999977777678999999987 554321 111 0112688999999998777766678
Q ss_pred eEEEEECCCCeeeE-EEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcce-eeeccccccEEEEEEcCC
Q 011216 250 CIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMGHLEGITFIDSRGD 327 (491)
Q Consensus 250 ~i~vwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~i~~i~~sp~ 327 (491)
.|..+|.. ++... .+......+.++++. ++++++++...++.|..+|.. +... ..+......+..+++.++
T Consensus 84 ~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-----g~~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 84 KIGKLSKK-GGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-----GTIYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp EEEEECTT-SCEEEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-----SCEEEEECSSTTCCEEEEEECTT
T ss_pred eEEEECCC-CCeEEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-----CCEEEccCCCCCCCceeEEECCC
Confidence 99999988 55432 222234678999997 678888877778899999874 2222 122223456889999999
Q ss_pred CCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCccc
Q 011216 328 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 407 (491)
Q Consensus 328 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 407 (491)
++++++...++.|..+|... . +..+........ ...++++
T Consensus 157 g~l~v~~~~~~~i~~~~~~g-~-----------------------------------~~~~~~~~~~~~----~~~i~~d 196 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITNTG-K-----------------------------------LEEYPLPTNAAA----PVGITSG 196 (300)
T ss_dssp SSEEEEETTTTEEEEECTTC-C-----------------------------------EEEEECSSTTCC----EEEEEEC
T ss_pred CCEEEEecCCCeEEEECCCC-c-----------------------------------EEEeeCCCCCCC----cceEEEC
Confidence 99777666678899998732 1 111111000011 1223456
Q ss_pred CCCcEEEEEecCCeEEEEECCCccEEEE-ecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCC
Q 011216 408 TGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 470 (491)
Q Consensus 408 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~ 470 (491)
++|++.++....+.|.+||. +++.... +..+...+.+++++++|.++++...++.|..|+..
T Consensus 197 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 197 NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 67887776666778999998 5554432 33455678999999999877766667889999873
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.48 E-value=2.8e-12 Score=118.68 Aligned_cols=284 Identities=8% Similarity=-0.030 Sum_probs=169.3
Q ss_pred CceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEEe----eccCCceeEEEeEeCCCCceEEEEec-----CCeE
Q 011216 125 SRAYVSQFSADGSLFVAGF--QASQIRIYDVERGWKIQKDI----LAKSLRWTVTDTSLSPDQRHLVYASM-----SPIV 193 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~--~dg~i~vw~~~~~~~~~~~~----~~~~~~~~v~~l~~sp~~~~l~~~~~-----dg~i 193 (491)
.....++++|+|+++++.. .++.++||.+.++. +.... ....+-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6788999999999988864 23435566555553 22111 11123457999999999986665443 5789
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE-EEEe---cCCeEEEEECCCCeeeEEEeccC
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGS---SDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~---~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
.+||+.+++......+.... ..+...+..+++++++..+ ++.. .++.|.+||+.+++..+.+.+|.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPI----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp EEEETTTTEEEEEEECCTTT----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred EEEECCCCeEEEEEECChhh----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 99999988755443322110 0111246789999865455 4444 57899999999888766554442
Q ss_pred CCeE-EEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC-cEEEeeCCC
Q 011216 270 SDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRK 347 (491)
Q Consensus 270 ~~v~-~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-~i~iwd~~~ 347 (491)
.... ...+. .++..+.+.+.++.++.|. ..+..|+|+|+++.|+++..++ .+..++...
T Consensus 166 ~~~~~~~~~~-~~g~~~~~~~~~g~~~~~~------------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 166 GIAPEDIDLV-IDGVPVQIGQPDGTVIRPH------------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp TTSCCSCCCE-ETTEECBEECTTSCEECCC------------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred ccccccccee-ECCEEEEeccCCCceecee------------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 2111 12333 3455666666777765553 1356799999999888887766 344443221
Q ss_pred CCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEEC
Q 011216 348 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 427 (491)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~ 427 (491)
..... .. .. . + ...+..+ ++.. ..-.++++++|+++++...++.|.+||.
T Consensus 227 ~~~~~-~~--~~---------------~-~----~~~~~~~-g~~g------~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 227 LSNLQ-LT--DA---------------E-L----GSKIERY-SEKP------ICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HTCTT-CC--HH---------------H-H----HTTCEEE-EECC------SCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred hcCCC-CC--hh---------------h-h----hcceEec-ccCC------CCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 00000 00 00 0 0 0000000 0000 0112356778999998888999999998
Q ss_pred CCccEEEEecC-CCCCeeeeEecCCCCeEEEEECCCcEEEec
Q 011216 428 VSGEQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 428 ~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
.+++....... +...+.+++|.+++.++++.+..+.+.+|.
T Consensus 277 ~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 277 ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 56664333322 245688999999998888877655554444
No 213
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.45 E-value=5.9e-12 Score=115.99 Aligned_cols=270 Identities=9% Similarity=-0.078 Sum_probs=167.1
Q ss_pred eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe----------cCCeEEEEECCCCccccccceecccccc
Q 011216 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS----------MSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 147 ~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (491)
+|.++|..+++.+........ + .+.++||+++++++. .++.|.+||..+++......+.....
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~---P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-- 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL---S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-- 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT---C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--
T ss_pred eEEEEECCCCeEEEEEeCCCC---C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--
Confidence 889999999977776554432 3 699999999999886 36889999999998876654431000
Q ss_pred ccccCCCCCceecEEEEEEcCCCCEEEEEec--CCeEEE--EECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 011216 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 217 ~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg 292 (491)
+.. ......++++|||++++++.. +..|.+ +|+.+ +..+.-. +. +.+.|...+.+++.+.||
T Consensus 120 -~~~------g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 120 -FSV------GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp -CCB------SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTT
T ss_pred -ccc------CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCC
Confidence 000 002346899999999998874 467888 88877 3444211 11 122344556677778888
Q ss_pred eEEEEeCccccCC-Cccee----eeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeecee
Q 011216 293 LCKVWDRRCLNVK-GKPAG----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 293 ~i~iwd~~~~~~~-~~~~~----~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
.+.+.|+...... ++... .+.-...+. . .+++..++..+. +.+.+.|+......
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~---------------- 244 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT---------------- 244 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE----------------
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce----------------
Confidence 8888887620000 11110 111112333 3 556666666666 88999998642110
Q ss_pred ecCCCCcccccCCCCCeeEEEcccc----eeeeeEEEEecCcccCCCcEEEEEec-C--------CeEEEEECCCccEEE
Q 011216 368 MDYPPQARDLKHPCDQSVATYKGHS----VLRTLIRCHFSPVYSTGQKYIYTGSH-D--------SCVYVYDLVSGEQVA 434 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~~l~~g~~-d--------g~i~iwd~~~~~~~~ 434 (491)
.+..+.... .............++|+++.++++.. + +.+.++|+.+++.+.
T Consensus 245 ----------------v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~ 308 (368)
T 1mda_H 245 ----------------MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG 308 (368)
T ss_dssp ----------------EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred ----------------EEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence 000010000 00000000000247778988887644 2 356699999999998
Q ss_pred EecCCCCCeeeeEecCCCC-eEEEEE-CCCcEEEecCCCCCCC
Q 011216 435 ALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEFPGNGEA 475 (491)
Q Consensus 435 ~~~~h~~~v~~~~~s~~~~-~l~s~~-~Dg~i~iw~~~~~~~~ 475 (491)
.+.... ....++|+|||+ .+++.. .++.|.++|+.+.+..
T Consensus 309 ~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 309 PISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp CCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 887443 578999999998 566666 5999999999887543
No 214
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.45 E-value=2.2e-12 Score=119.09 Aligned_cols=172 Identities=16% Similarity=0.102 Sum_probs=127.6
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCe---------e-eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEe
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------L-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 298 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~-~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd 298 (491)
++..+++++...++++|+.++ +.+|++.... . ......+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 578899999999999999886 6679875433 1 112234666 999999 67889888 889999999
Q ss_pred CccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCccccc
Q 011216 299 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 378 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
++.. ........|..++..+.+.+. .++++..||.|.+||+....
T Consensus 113 v~sl----~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~----------------------------- 157 (388)
T 1xip_A 113 LEEL----SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKS----------------------------- 157 (388)
T ss_dssp SSST----TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCC-----------------------------
T ss_pred chhh----hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCc-----------------------------
Confidence 9833 334445566777888877655 38889999999999998622
Q ss_pred CCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE--EEEe------c---CCCCCeeeeE
Q 011216 379 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAAL------K---YHTSPVRDCS 447 (491)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~------~---~h~~~v~~~~ 447 (491)
... . ...+.+.+|||+| ++.|..||.+++|+...++. ...+ . +|...|.+++
T Consensus 158 -----~~~-~---------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~ 220 (388)
T 1xip_A 158 -----TKQ-L---------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT 220 (388)
T ss_dssp -----EEE-E---------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred -----ccc-c---------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence 111 0 1112344778888 67899999999999877775 5556 2 4788999999
Q ss_pred ecCCCCeEEEE
Q 011216 448 WHPSQPMLVSS 458 (491)
Q Consensus 448 ~s~~~~~l~s~ 458 (491)
|.+++.+|++=
T Consensus 221 wl~~~~flv~y 231 (388)
T 1xip_A 221 ILSPQDFLAVF 231 (388)
T ss_dssp ESSSSEEEEEE
T ss_pred EecCCeEEEEE
Confidence 99999988863
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=2.2e-11 Score=123.64 Aligned_cols=242 Identities=15% Similarity=0.146 Sum_probs=153.1
Q ss_pred CceeEEEeEeCCCCceEEEEec-----CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEE
Q 011216 168 LRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (491)
Q Consensus 168 ~~~~v~~l~~sp~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l 242 (491)
+...+..++|||||++|+.+.. ...|++||+.+++..... ... .....++|+ |++.|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~----------------~k~~~~~Ws-Dg~~l 188 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKD----------------VKFSGISWL-GNEGF 188 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEE----------------EESCCCEEE-TTTEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCC----------------ceeccEEEe-CCCEE
Confidence 4457888999999999986542 247999999998854321 110 012467999 99999
Q ss_pred EEEecCC-------------eEEEEECCCCee----eEEEec-cCCCeEEEEEecCCCCEEEEEe----CCCeEEEEeCc
Q 011216 243 VAGSSDD-------------CIYVYDLEANKL----SLRILA-HTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDRR 300 (491)
Q Consensus 243 ~~~~~dg-------------~i~vwd~~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~l~s~s----~dg~i~iwd~~ 300 (491)
+.++.+. .|++|++.++.. +..... |...+..+.|+ +++++|+... .+..|.++|+.
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECC
Confidence 9888774 399999987653 222223 45567889998 6777765433 23589999986
Q ss_pred cccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-C---CcEEEeeCCCCCCccccccCcccceeeceeecCCCCccc
Q 011216 301 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-D---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 376 (491)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
... .....+..+....... ++++|..|+..+. + +.|..+|+.+...
T Consensus 268 ~~~---~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------------------------- 317 (693)
T 3iuj_A 268 QEN---APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------------------------- 317 (693)
T ss_dssp STT---CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--------------------------
T ss_pred CCC---CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--------------------------
Confidence 221 1344555555555554 5666666554433 2 5788899876321
Q ss_pred ccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CC--eEEEEECCCccEEEEec-CCCCCeeeeEecCCC
Q 011216 377 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQ 452 (491)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg--~i~iwd~~~~~~~~~~~-~h~~~v~~~~~s~~~ 452 (491)
.....+..+... .. .++++++.|+.... ++ .|++||+..+ ....+. .+.+.+..+.+++++
T Consensus 318 ------~~~~~l~~~~~~--~~------~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~ 382 (693)
T 3iuj_A 318 ------AHWRDLIPERQQ--VL------TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDD 382 (693)
T ss_dssp ------GGCEEEECCCSS--CE------EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTC
T ss_pred ------cccEEEecCCCC--EE------EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCC
Confidence 011222222211 11 34556777766655 44 6899998744 444443 344567888899998
Q ss_pred CeEEEEECC----CcEEEecCCCCC
Q 011216 453 PMLVSSSWD----GDVVRWEFPGNG 473 (491)
Q Consensus 453 ~~l~s~~~D----g~i~iw~~~~~~ 473 (491)
+.|+....+ +.|+.||+.++.
T Consensus 383 ~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 383 PALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CEEEEEecCCCCCCEEEEEECCCCe
Confidence 876665544 789999987654
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.44 E-value=2.2e-12 Score=119.10 Aligned_cols=174 Identities=13% Similarity=0.049 Sum_probs=127.2
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--------EEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
+++.+++++...++++|+.++ +++|++.+... .... ....+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999884 66698653210 1110 1112444 999999 99999998 889999999
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEE
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~ 277 (491)
+.+........ .|..++.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|
T Consensus 113 v~sl~~~~~~~----------------~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W 170 (388)
T 1xip_A 113 LEELSEFRTVT----------------SFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV 170 (388)
T ss_dssp SSSTTCEEEEE----------------ECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred chhhhccCccc----------------eeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence 98755322111 12225777777654 38889999999999999877643 4568999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcc--eeee------c---cccccEEEEEEcCCCCEEEEe
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AGVL------M---GHLEGITFIDSRGDGRYLISN 334 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~------~---~~~~~i~~i~~sp~~~~l~~~ 334 (491)
+ ++| ++.|..||++++|+.. .... ...+ . +|...|.+|.|.+++.++++-
T Consensus 171 S-pkG--~~vg~~dg~i~~~~~~----~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 171 T-NSQ--LAVLLKDRSFQSFAWR----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp C-SSE--EEEEETTSCEEEEEEE----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred c-CCc--eEEEEcCCcEEEEcCC----CccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9 666 6789999999999875 3332 3333 2 367889999999999988863
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=3.4e-11 Score=112.75 Aligned_cols=244 Identities=13% Similarity=0.123 Sum_probs=155.1
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeec-cC---CceeEEEeEeCCCCceEEEEec--CCe
Q 011216 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILA-KS---LRWTVTDTSLSPDQRHLVYASM--SPI 192 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~-~~---~~~~v~~l~~sp~~~~l~~~~~--dg~ 192 (491)
.+++||||++|+++. .++.|.++|..+++.+..+... .. .......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999888775 4678999999998776665432 10 0113456899999999999874 578
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEE----Eec
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLR----ILA 267 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~~~ 267 (491)
|.+.|+.+++......... . ....|++ +.+++.+.||.+.+.+..+++.... +..
T Consensus 202 VsVID~~t~kvv~~I~v~g------------------~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPD------------------C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp EEEEETTTTEEEEEEECCS------------------E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred EEEEECCCCeEEEEEEcCC------------------c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 9999999988765544321 1 1222322 4455556667666666655544321 111
Q ss_pred cCCCe-EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec----------cccccEEEEEEcCCCCEEEEeeC
Q 011216 268 HTSDV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 268 ~~~~v-~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
...++ ..+.+. +++..++..+..+.|.+.|...... ..+..+. ........++++|+++.+++...
T Consensus 262 ~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~--~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 262 EDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGA--TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp TTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCE--EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred CCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCce--EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 11111 234566 5566666667788999999852110 0000000 01112223689999887776532
Q ss_pred ----------CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcc
Q 011216 337 ----------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY 406 (491)
Q Consensus 337 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (491)
++.|.++|+.+. +.+..+... ...+.+.|
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~----------------------------------kvv~~I~vg-------~~P~gia~ 377 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETG----------------------------------ERINKIELG-------HEIDSINV 377 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTC----------------------------------CEEEEEEEE-------EEECEEEE
T ss_pred ccccccccCCCCEEEEEECCCC----------------------------------eEEEEEECC-------CCcCeEEE
Confidence 357999999883 344444321 12455578
Q ss_pred cCCCc-EEEEEe-cCCeEEEEECCCccEEEEe
Q 011216 407 STGQK-YIYTGS-HDSCVYVYDLVSGEQVAAL 436 (491)
Q Consensus 407 s~~~~-~l~~g~-~dg~i~iwd~~~~~~~~~~ 436 (491)
+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 88999 888888 4899999999999999887
No 218
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=1.4e-10 Score=104.88 Aligned_cols=199 Identities=11% Similarity=0.045 Sum_probs=129.7
Q ss_pred CceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 125 SRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 125 ~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
.-.-+..|+|++ .++++...++.|..||..++... . ... ...+.+++++|+++++++ . ++.|.+||.++++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~-~~~---~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-R-VTM---DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-E-EEC---SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-E-EeC---CCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 344578999965 45666667889999999887432 1 111 236899999999995444 4 57899999988765
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-----------CCeEEEEECCCCeeeEEEeccCCCe
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
..+...... .....+.+++++|+|+++++... .+.|+.++.. ++. ..+..+....
T Consensus 86 ~~~~~~~~~------------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~p 151 (297)
T 3g4e_A 86 VVLATVDND------------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDIS 151 (297)
T ss_dssp EEEEECCTT------------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBE
T ss_pred EEEEecCCC------------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccc
Confidence 433221110 01235889999999996665422 2344444443 333 3333444567
Q ss_pred EEEEEecCCCCEE-EEEeCCCeEEEEeCccccCCCc-----ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 273 NTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~i~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
+.++|+ ++++.| ++.+.++.|.+||+... .+. ....+..+......++++++|++.++...++.|.+||..
T Consensus 152 ngi~~s-pdg~~lyv~~~~~~~i~~~~~d~~--~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 152 NGLDWS-LDHKIFYYIDSLSYSVDAFDYDLQ--TGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp EEEEEC-TTSCEEEEEEGGGTEEEEEEECTT--TCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred cceEEc-CCCCEEEEecCCCCcEEEEeccCC--CCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 899998 666655 55666889999987311 222 122233344567889999999888887778889999987
Q ss_pred C
Q 011216 347 K 347 (491)
Q Consensus 347 ~ 347 (491)
+
T Consensus 229 t 229 (297)
T 3g4e_A 229 T 229 (297)
T ss_dssp T
T ss_pred C
Confidence 5
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=4.2e-11 Score=108.83 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=143.5
Q ss_pred eEEEeEeCCCCc-eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC
Q 011216 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (491)
Q Consensus 171 ~v~~l~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg 249 (491)
......|+|+++ ++++...++.|..|+. ++....... +...+..++++++|+++++...++
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~-----------------~~~~~~gl~~d~dG~l~v~~~~~~ 107 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLD-----------------ATAFTNGNAVDAQQRLVHCEHGRR 107 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEE-----------------SCSCEEEEEECTTSCEEEEETTTT
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeC-----------------CCCccceeeECCCCCEEEEECCCC
Confidence 356789999998 5555667789999987 444221111 112578899999999666655668
Q ss_pred eEEEEECCCCeeeEEEecc-----CCCeEEEEEecCCCCEEEE----EeC-------------CCeEEEEeCccccCCCc
Q 011216 250 CIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESGHLIYS----GSD-------------DNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~ 307 (491)
.|.+|+.. ++.. .+..+ ...++.+++. ++++++++ |.. .+.|..||.. .++
T Consensus 108 ~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~----~g~ 180 (305)
T 3dr2_A 108 AITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD----GSP 180 (305)
T ss_dssp EEEEECTT-SCEE-EEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS----SCC
T ss_pred EEEEECCC-CCEE-EEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC----CCc
Confidence 89999986 5432 22211 2346789997 78888876 332 2467777764 233
Q ss_pred ceeeeccccccEEEEEEcCCCCEEEEeeCC------CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCC
Q 011216 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (491)
Q Consensus 308 ~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
... +. .......++|+|+++.|+.+... +.|.+|++.... ..
T Consensus 181 ~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~----------------------------- 228 (305)
T 3dr2_A 181 LQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LH----------------------------- 228 (305)
T ss_dssp CEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EE-----------------------------
T ss_pred EEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-cc-----------------------------
Confidence 322 22 44567889999999988777665 679999876421 00
Q ss_pred CCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECC
Q 011216 382 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 461 (491)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~D 461 (491)
....+.... ......+.++++|++ .+++.+ .|.+|+. .++.+..+..+. .+.+++|+|+++.|..++.+
T Consensus 229 --~~~~~~~~~-----~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 229 --DRRHFASVP-----DGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp --EEEEEECCS-----SSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETT
T ss_pred --CCeEEEECC-----CCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCC
Confidence 000000000 000112345668884 444444 4999998 677777776555 58999999999988888776
Q ss_pred CcEE
Q 011216 462 GDVV 465 (491)
Q Consensus 462 g~i~ 465 (491)
+..+
T Consensus 298 ~l~~ 301 (305)
T 3dr2_A 298 CLWM 301 (305)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 5333
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.43 E-value=8.3e-11 Score=106.87 Aligned_cols=204 Identities=10% Similarity=0.050 Sum_probs=130.5
Q ss_pred CccccCCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEE
Q 011216 117 PWPVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 117 ~~~~~~h~~~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~i 195 (491)
...+..........+|+|+|+ +++++..++.|..|+.. +. ...... ....+..++++++|+++++...++.|.+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~---~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLD---ATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEE---SCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeC---CCCccceeeECCCCCEEEEECCCCEEEE
Confidence 344555556677899999999 56667778999999984 42 222221 2236889999999996666555678999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEE----Eec-------------CCeEEEEECCC
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----GSS-------------DDCIYVYDLEA 258 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~----~~~-------------dg~i~vwd~~~ 258 (491)
|+.+ ++......... + .....+.++++.++|+++++ |.. .+.|+.+|..+
T Consensus 112 ~~~~-g~~~~~~~~~~---~---------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYA---G---------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp ECTT-SCEEEEECEET---T---------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred ECCC-CCEEEEEeccC---C---------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 9976 54332221111 0 00114667999999997775 332 35688888877
Q ss_pred CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCC------CeEEEEeCccccCCCcc--eeee-ccccccEEEEEEcCCCC
Q 011216 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCLNVKGKP--AGVL-MGHLEGITFIDSRGDGR 329 (491)
Q Consensus 259 ~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~--~~~~-~~~~~~i~~i~~sp~~~ 329 (491)
++..... .....+.++|+ ++++.|+.+... +.|.+|++. .... ...+ .........+++.++|+
T Consensus 179 g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~----~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 179 SPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWR----DGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp CCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEE----TTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred CcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEec----CCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 7654333 44567889998 778877776654 789999986 2211 0111 11123345688999998
Q ss_pred EEEEeeCCCcEEEeeCCC
Q 011216 330 YLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 330 ~l~~~~~dg~i~iwd~~~ 347 (491)
+.+ +..+ .|.+|+...
T Consensus 252 lwv-~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 252 LWS-SSGT-GVCVFDSDG 267 (305)
T ss_dssp EEE-CCSS-EEEEECTTS
T ss_pred EEE-ecCC-cEEEECCCC
Confidence 544 4444 499998753
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.42 E-value=7.6e-10 Score=101.44 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=141.4
Q ss_pred EEEeEeCCCCc-eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 172 VTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 172 v~~l~~sp~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
....+|+|++. ++++...++.|..||..+++.... .. ...+.+++|+++|+++++. .+ .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~-----------------~~~v~~i~~~~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-AL-----------------PFMGSALAKISDSKQLIAS-DD-G 110 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-EC-----------------SSCEEEEEEEETTEEEEEE-TT-E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-EC-----------------CCcceEEEEeCCCeEEEEE-CC-C
Confidence 45678999754 555555678999999987754221 11 1168899999999866654 44 4
Q ss_pred EEEEECCCCeeeEEEec----cCCCeEEEEEecCCCCEEEEEeCC----CeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 251 IYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
|.+||..+++....... ....++++++. ++++++++...+ +...||.+. .++ +..+..+......+
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~----~g~-~~~~~~~~~~~~~i 184 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA----KGK-VTKLFADISIPNSI 184 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE----TTE-EEEEEEEESSEEEE
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe----CCc-EEEeeCCCcccCCe
Confidence 99999988775432211 12357899997 678776654321 233444443 122 22222333456789
Q ss_pred EEcCCCCEEEEe-eCCCcEEEeeCC--CC-CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 323 DSRGDGRYLISN-GKDQAIKLWDIR--KM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 323 ~~sp~~~~l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
+|+|+++.|+.+ +.++.|.+||+. +. .... ...+..+..... .
T Consensus 185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------------------------~~~~~~~~~~~~--~-- 231 (326)
T 2ghs_A 185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------------------------AEVFIDSTGIKG--G-- 231 (326)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------------------------CEEEEECTTSSS--E--
T ss_pred EEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----------------------------ceEEEECCCCCC--C--
Confidence 999999877554 456789999986 32 1000 011111111110 0
Q ss_pred EEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEec-CCCCeEEEEEC
Q 011216 399 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQPMLVSSSW 460 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~ 460 (491)
....+++++|++.++...++.|.+||. +++.+..+..+...+++++|+ |++..|+.++.
T Consensus 232 --p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 232 --MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp --EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred --CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 112345668887777766789999998 677777777777789999998 88886655443
No 222
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.38 E-value=9.9e-10 Score=100.67 Aligned_cols=198 Identities=12% Similarity=0.097 Sum_probs=128.1
Q ss_pred ceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc
Q 011216 126 RAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 126 ~v~~~~~s~dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (491)
-....+|+|++. ++++...++.|..||..++... .. .. ...+.+++|+|+++++++. . ..|.+||..+++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~---~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-AL---PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-EC---SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-EC---CCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEE
Confidence 345788999855 5556667889999999887432 21 11 2368999999999877754 3 45999999887754
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec------CCeEEEEECCCCeeeEEEeccCCCeEEEEEe
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~ 278 (491)
....... ......+.+++++|+|+++++... .+.|+.++ +++.. .+..+....+.++|+
T Consensus 123 ~~~~~~~------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s 187 (326)
T 2ghs_A 123 LHAELES------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS 187 (326)
T ss_dssp EEECSST------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC
T ss_pred EEeeCCC------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc
Confidence 3221110 001236889999999986665432 24566666 45443 333344567899998
Q ss_pred cCCCCEE-EEEeCCCeEEEEeCc--cc-cCCC-cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 279 DESGHLI-YSGSDDNLCKVWDRR--CL-NVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 279 ~~~~~~l-~s~s~dg~i~iwd~~--~~-~~~~-~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
++++.+ ++.+.++.|.+||+. .. .... .....+......+..+++.++|.++++...++.|.+||..
T Consensus 188 -~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 188 -PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp -TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred -CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 677655 444567899999974 11 1111 1122222233456789999999887777667889999874
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.33 E-value=4.2e-09 Score=98.74 Aligned_cols=268 Identities=11% Similarity=0.033 Sum_probs=164.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCC------ceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~------~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 208 (491)
++..|++++.++.|..+|..+++.+-........ ...+... ...++..+++++.++.|..+|..+++......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3567888888999999999988665443322110 1122221 12245677888889999999999998754433
Q ss_pred eeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe-----EEEEEecCCCC
Q 011216 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGH 283 (491)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~ 283 (491)
..... ...++ .. +..+++++.++.|..+|..+++.+.......... ...... +.
T Consensus 131 ~~~~~------------~~~p~----~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~ 189 (376)
T 3q7m_A 131 VAGEA------------LSRPV----VS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG 189 (376)
T ss_dssp CSSCC------------CSCCE----EE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT
T ss_pred CCCce------------EcCCE----EE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC
Confidence 22110 00011 11 4478888899999999999998876664332211 222332 35
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccc-------cEEEEEEcC--CCCEEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-------GITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~i~~i~~sp--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
.++.++.++.+..+|.. .++.+........ .+..+...| .+..++.++.++.+..+|..+.+
T Consensus 190 ~v~~g~~~g~l~~~d~~----tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~----- 260 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLME----QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ----- 260 (376)
T ss_dssp EEEECCTTTEEEEEETT----TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-----
T ss_pred EEEEEcCCCEEEEEECC----CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-----
Confidence 67888889999999987 5555544432110 000011111 24567778889999999998743
Q ss_pred ccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEE
Q 011216 355 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 434 (491)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 434 (491)
.+........ . .+.. ++..|++++.++.|+.+|..+++.+.
T Consensus 261 -----------------------------~~w~~~~~~~----~----~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 261 -----------------------------IMWKRELGSV----N----DFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp -----------------------------EEEEECCCCE----E----EEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred -----------------------------EEeeccCCCC----C----CceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 2222111110 0 0111 35678888889999999999999887
Q ss_pred EecC-CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 435 ALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 435 ~~~~-h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.... ....+..... .+..|+.++.+|.|+++|..+++.
T Consensus 302 ~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 302 TQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp EECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred eecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 7652 2223333443 346788888999999999887653
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=6.5e-11 Score=109.45 Aligned_cols=231 Identities=15% Similarity=0.080 Sum_probs=145.4
Q ss_pred eEEEeEeCCCCceEEEEe--cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-
Q 011216 171 TVTDTSLSPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS- 247 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~- 247 (491)
.+..++++|+|+.+++.. .++.++||.+.+++........ ....+|-..+..++++++++++++-..
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQS----------GNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCC----------SSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcc----------cCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 688999999999888864 2343555555444432111100 011234457999999999876555433
Q ss_pred ----CCeEEEEECCCCeeeEEEecc------CCCeEEEEEecCCCCEEEEEe---CCCeEEEEeCccccCCCcceeeecc
Q 011216 248 ----DDCIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMG 314 (491)
Q Consensus 248 ----dg~i~vwd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~ 314 (491)
++.|.+||+.+++.+..+... ...+..+++.+.++..+++.. .++.|.+||+. .++....+.+
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~----~g~~~r~~~~ 163 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ----TGLAARVLQG 163 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT----TCCEEEECTT
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC----CCCEEEEecC
Confidence 578999999999876666422 245689999744455555555 67899999986 5555554544
Q ss_pred ccccEE-EEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccce
Q 011216 315 HLEGIT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 393 (491)
Q Consensus 315 ~~~~i~-~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
|..... ...+.++|..+.+.+.++.++.|...
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~----------------------------------------------- 196 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLG----------------------------------------------- 196 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCC-----------------------------------------------
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecc-----------------------------------------------
Confidence 322100 13344466666666677776655321
Q ss_pred eeeeEEEEecCcccCCCcEEEEEecCC-eEEEEECC---Ccc-----EEE--EecCCCCCeeeeEecCCCCeEEEEECCC
Q 011216 394 LRTLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLV---SGE-----QVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDG 462 (491)
Q Consensus 394 ~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iwd~~---~~~-----~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~Dg 462 (491)
...++++|+++.|+++..++ .|+.++.. .+. ... ...++.+....++++++|.++++...++
T Consensus 197 -------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~ 269 (343)
T 2qe8_A 197 -------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS 269 (343)
T ss_dssp -------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT
T ss_pred -------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC
Confidence 12346788999888887766 55555532 110 000 1113344567899999999888888899
Q ss_pred cEEEecC
Q 011216 463 DVVRWEF 469 (491)
Q Consensus 463 ~i~iw~~ 469 (491)
.|.+|+.
T Consensus 270 ~V~~~d~ 276 (343)
T 2qe8_A 270 AIGVITS 276 (343)
T ss_dssp EEEEEET
T ss_pred eEEEEEC
Confidence 9999998
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.27 E-value=6.4e-10 Score=112.22 Aligned_cols=311 Identities=12% Similarity=0.100 Sum_probs=178.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce-------eE-EEeEeCCCCceEEEEecCCeEEEEECCCCcccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~v-~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (491)
+..|++++.++.|.-+|..+|+.+-+......... .+ ..++. .+..|++++.|+.|..+|..+|+.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55677788889999999999976655432211000 00 01122 4567888889999999999999876554
Q ss_pred cee-ccccccccccCCCCCceecEEEEEEcCCCCEEEEEe------cCCeEEEEECCCCeeeEEEecc--C---------
Q 011216 208 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAH--T--------- 269 (491)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~--~--------- 269 (491)
... ....... ....++. .++ .+++++ .+|.|+.||..+++.+-++... .
T Consensus 148 ~~~~~~~~~~~-------~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~ 214 (689)
T 1yiq_A 148 DTRADHKRSYT-------ITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKG 214 (689)
T ss_dssp ECCSCTTSCCB-------CCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHH
T ss_pred cCcCCCCCCcc-------ccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccc
Confidence 432 1000000 0001111 144 455544 3689999999999987665421 0
Q ss_pred --------------------CCeEEEEEecCCCCEEEEEeCCCe-------------------EEEEeCccccCCCccee
Q 011216 270 --------------------SDVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAG 310 (491)
Q Consensus 270 --------------------~~v~~i~~~~~~~~~l~s~s~dg~-------------------i~iwd~~~~~~~~~~~~ 310 (491)
.....+++. ++..+++.++.++. |..+|.. +++.+.
T Consensus 215 ~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----TG~~~W 289 (689)
T 1yiq_A 215 MEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----TGEYVW 289 (689)
T ss_dssp HHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----TCCEEE
T ss_pred ccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----CCceeE
Confidence 011256776 66778888887764 8999997 677766
Q ss_pred eecc--cc-------ccEEEEEEcCCCC---EEEEeeCCCcEEEeeCCCCCCccccccCcccceeecee-------ecCC
Q 011216 311 VLMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW-------MDYP 371 (491)
Q Consensus 311 ~~~~--~~-------~~i~~i~~sp~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 371 (491)
.+.. |. .++.......+|+ .++.++.+|.++++|.++++.......... .|.... +...
T Consensus 290 ~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~--~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 290 HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQ--SWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCC--SSEEEEETTTTEEEECH
T ss_pred eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccc--ccccccCccCCCcccch
Confidence 5543 21 1222223233565 788999999999999998765433222110 111000 0000
Q ss_pred CCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec---------------------------------
Q 011216 372 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH--------------------------------- 418 (491)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--------------------------------- 418 (491)
. .. ...+..+....+.+..... ....++|+|+..++++...
T Consensus 368 ~-~~-~~~~~~~~~~~~p~~~Gg~----~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~ 441 (689)
T 1yiq_A 368 E-NA-AYWKNGKRNLVTPAFWGAH----DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPE 441 (689)
T ss_dssp H-HH-CTTTSSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCS
T ss_pred h-hc-cccCCCCeeEeCCCccccc----CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCc
Confidence 0 00 0000001000000000000 0011345555555555421
Q ss_pred ------------CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 419 ------------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 419 ------------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
+|.|+.||+.+|+.+..+..+. ++..-.+...+.+++.++.||.|+.||..+++..
T Consensus 442 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 442 GAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp SHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 3789999999999998887543 3444566778889999999999999999988753
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.27 E-value=9.1e-10 Score=110.86 Aligned_cols=310 Identities=12% Similarity=0.115 Sum_probs=180.9
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce--------eEEEeEeCCCCceEEEEecCCeEEEEECCCCcccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--------TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~--------~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (491)
+..|++++.++.|.-+|..+|+.+-+......... ....+++ ++..|++++.|+.|..+|..+|+.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45677777788999999999976655432211100 0011222 4667888889999999999999876554
Q ss_pred cee-ccccccccccCCCCCceecEEEEEEcCCCCEEEEEec------CCeEEEEECCCCeeeEEEeccCCC---------
Q 011216 208 NVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD--------- 271 (491)
Q Consensus 208 ~~~-~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~--------- 271 (491)
... ....+... ...++ . .+..+++++. ++.|+.+|..+++.+-++......
T Consensus 155 ~~~~~~~~~~~~-------~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~ 221 (677)
T 1kb0_A 155 NTFEGQKGSLTI-------TGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES 221 (677)
T ss_dssp ETTTTCCSSCBC-------CSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH
T ss_pred cCCcCcCcCccc-------ccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc
Confidence 432 10000000 00011 1 1345565553 689999999999987766532211
Q ss_pred -----------------------eEEEEEecCCCCEEEEEeCCC-------------------eEEEEeCccccCCCcce
Q 011216 272 -----------------------VNTVCFGDESGHLIYSGSDDN-------------------LCKVWDRRCLNVKGKPA 309 (491)
Q Consensus 272 -----------------------v~~i~~~~~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~ 309 (491)
...+++. +++.+++.++.++ .|..+|.. +++.+
T Consensus 222 ~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~----TG~~~ 296 (677)
T 1kb0_A 222 MKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD----TGKYK 296 (677)
T ss_dssp HHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEE
T ss_pred cccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC----CCCEE
Confidence 1346776 6677888877664 48888987 66666
Q ss_pred eeecc--cc-------ccEEEEEEcCCC---CEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccc
Q 011216 310 GVLMG--HL-------EGITFIDSRGDG---RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 310 ~~~~~--~~-------~~i~~i~~sp~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
..+.. |. .....+....+| ..++.++.+|.++++|..+++........... |... + ...+..+
T Consensus 297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~--~~~~-~--d~~g~~~ 371 (677)
T 1kb0_A 297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN--WASG-Y--DKHGKPI 371 (677)
T ss_dssp EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS--SEEE-E--CTTSCEE
T ss_pred EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccC--cccc-c--CCCCcee
Confidence 55442 21 112223333467 67899999999999999987654433221100 0000 0 0000000
Q ss_pred cC----CCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-----------------------------------
Q 011216 378 KH----PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------------------------------- 418 (491)
Q Consensus 378 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----------------------------------- 418 (491)
.. ..+.....+.+.... .....++++|++.++++...
T Consensus 372 ~~~~~~~~~~~~~~~P~~~G~----~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 372 GIAAARDGSKPQDAVPGPYGA----HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp ECGGGGCTTSCEECSSCTTCS----SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred eccccCcCCCccEECcCcccc----cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 00 000000000000000 00013356677777766543
Q ss_pred --------CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCCC
Q 011216 419 --------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 475 (491)
Q Consensus 419 --------dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~~ 475 (491)
.|.|..||+.+++.+..+. +..++....+..++.+++.++.||.+++||..+++..
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 2789999999999998886 3445666677778888999999999999999988643
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=9.4e-11 Score=107.95 Aligned_cols=249 Identities=10% Similarity=0.049 Sum_probs=150.5
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEeeccCC----ceeEEEeEeCCCCceEEEEec--CCe
Q 011216 129 VSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSL----RWTVTDTSLSPDQRHLVYASM--SPI 192 (491)
Q Consensus 129 ~~~~s~dg~~l~~~~----------~dg~i~vw~~~~~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~~~~~--dg~ 192 (491)
.++|+|||++|+++. .++.|.+||..+++.+......... ......++++|||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999988886 3688999999999877765443110 013456899999999999875 467
Q ss_pred EEE--EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCC-----CeeeEE
Q 011216 193 VHI--VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEA-----NKLSLR 264 (491)
Q Consensus 193 i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~-----~~~~~~ 264 (491)
|.+ +|..+ ........ . ..+.|++ ..+++.+.||.+.+.|+.+ ++....
T Consensus 149 v~V~~iD~~t---v~~i~v~~------------------~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~ 205 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSAS------------------C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp EEEEETTTEE---EEEEECSS------------------C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred EEEEEEchhh---ceEEECCC------------------c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence 888 88876 11111100 0 1122333 3445556677787888876 433211
Q ss_pred ----EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc----------ccccEEEEEEcCCCCE
Q 011216 265 ----ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----------HLEGITFIDSRGDGRY 330 (491)
Q Consensus 265 ----~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~i~~i~~sp~~~~ 330 (491)
+.-...+. . .+. +..++..+. +.+.+.|.... ..+.+..+.. .......++++|+++.
T Consensus 206 ~t~~i~vg~~P~---~-~~~-~~~~~~vs~-~~V~viD~~~~--~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ 277 (368)
T 1mda_H 206 CTGAQNCSSQAA---Q-ANY-PGMLVWAVA-SSILQGDIPAA--GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG 277 (368)
T ss_dssp SCTTSCBCSCCE---E-ETT-TTEEEECBS-SCCEEEECCSS--CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred eeeeeeCCCCcc---c-ccc-CCEEEEEcC-CEEEEEECCCC--cceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence 11112333 3 434 445555555 89999998521 1111111110 0111122689999998
Q ss_pred EEEeeC---------CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEE
Q 011216 331 LISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 331 l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
++++.. ++.+.++|+.+.+ .+..+.... ..
T Consensus 278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~----------------------------------vv~~i~vg~-------~p 316 (368)
T 1mda_H 278 IMILTVEHSRSCLAAAENTSSVTASVGQ----------------------------------TSGPISNGH-------DS 316 (368)
T ss_dssp EEEEEEECSSCTTSCEEEEEEEESSSCC----------------------------------EEECCEEEE-------EE
T ss_pred EEEEeccccCcccccCCCEEEEECCCCe----------------------------------EEEEEECCC-------Cc
Confidence 886543 2356799998843 233222111 23
Q ss_pred ecCcccCCCcE-EEEEe-cCCeEEEEECCCccEEEEecCCCCCeeeeEecC
Q 011216 402 FSPVYSTGQKY-IYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 402 ~~~~~s~~~~~-l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~ 450 (491)
..+.++|||++ +++.. .++.|.++|+.+++.+..+..... ...+++.+
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 44577889985 45555 489999999999999999985544 45666654
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.26 E-value=6.1e-12 Score=117.37 Aligned_cols=203 Identities=14% Similarity=0.185 Sum_probs=113.5
Q ss_pred CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Q 011216 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (491)
Q Consensus 180 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~ 259 (491)
++..+++++.|+.|..||..+|+....... . .+.+..+..++..+++++.||.|+.||..++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-----------------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG 69 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-----------------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN 69 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-----------------CSCCCC-----CCEEECTTTCCEEEC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-----------------CceecceEcCCCEEEEeCCCCEEEEEECCCC
Confidence 577899999999999999999987654432 1 2223334456777788889999999999988
Q ss_pred eeeEEEeccCC-CeE-EEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC
Q 011216 260 KLSLRILAHTS-DVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 260 ~~~~~~~~~~~-~v~-~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d 337 (491)
+.+..+..+.. .+. +..+ ..+..+++++.++.|+.||.. +++.+..+..+. ...++|++..+++++.|
T Consensus 70 ~~~w~~~~~~~~~~~~sp~~--~~~~~v~~g~~dg~v~a~D~~----tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 70 EGLTKLPFTIPELVQASPCR--SSDGILYMGKKQDIWYVIDLL----TGEKQQTLSSAF----ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC------------------------------EEEEEEE
T ss_pred ceeeeeeccCccccccCceE--ecCCEEEEEeCCCEEEEEECC----CCcEEEEecCCC----cccccccCCEEEEEecC
Confidence 87655543211 110 1111 134577888899999999997 666666555443 23456788889999999
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCC---cEEE
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ---KYIY 414 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~ 414 (491)
+.|+.||.++++.... +... ....+.++.+. ..++
T Consensus 140 g~v~a~d~~tG~~~W~----------------------------------~~~~--------~~~~~~~~~~~~~~~~v~ 177 (369)
T 2hz6_A 140 YTITMYDTKTRELRWN----------------------------------ATYF--------DYAASLPEDDVDYKMSHF 177 (369)
T ss_dssp EEEECCCSSSSSCCCE----------------------------------EEEE--------EECCBCCCCCTTCCCCEE
T ss_pred CEEEEEECCCCCEEEe----------------------------------Eecc--------cccCccccCCccccceEE
Confidence 9999999987543221 1100 01223343332 4577
Q ss_pred EEecCCeEEEEECCCccEEEEecCCCCCee-eeEecCCCC
Q 011216 415 TGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQP 453 (491)
Q Consensus 415 ~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~ 453 (491)
+++.||.|+.||..+|+.+..+.. ..++. ...+++++.
T Consensus 178 ~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 178 VSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred EECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 788999999999999999888763 34443 345566664
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=2.3e-09 Score=107.96 Aligned_cols=327 Identities=12% Similarity=0.092 Sum_probs=171.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeec-cCC-ceeEEEeEeCCCCceEEEEec------CCeEEEEECCCCccccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSL-RWTVTDTSLSPDQRHLVYASM------SPIVHIVDVGSGTMESL 206 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~-~~~v~~l~~sp~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 206 (491)
++..|++++.|+.|..+|..+|+.+-..... ... ...+..--.. .+..+++++. ++.|..+|..+|+....
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 4567888889999999999999776654332 100 0111110001 2344555543 68999999999987654
Q ss_pred cceecccc--cc----------ccccCCC----CCceecEEEEEEcCCCCEEEEEecCC-------------------eE
Q 011216 207 ANVTEIHD--GL----------DFSAADD----GGYSFGIFSLKFSTDGRELVAGSSDD-------------------CI 251 (491)
Q Consensus 207 ~~~~~~~~--~~----------~~~~~~~----~~h~~~v~~i~~s~~~~~l~~~~~dg-------------------~i 251 (491)
........ .+ .+..... .+.......++++|++..++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 43321110 00 0000000 01111223578889888888887664 59
Q ss_pred EEEECCCCeeeEEEec--cC-------CCeEEEEEecCCC---CEEEEEeCCCeEEEEeCccccCCCcceeeecccc---
Q 011216 252 YVYDLEANKLSLRILA--HT-------SDVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL--- 316 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 316 (491)
..+|..+++.+-.+.. |. .....+... .++ ..++.++.+|.++++|.. +++.+.......
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~-~dG~~~~~l~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIK-IAGKPRKVILHAPKNGFFFVLDRT----NGKFISAKNFVPVNW 360 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEecc-cCCcEeeEEEEECCCCEEEEEECC----CCCEeccccccccCc
Confidence 9999999998776653 21 112222332 355 688999999999999987 566554432110
Q ss_pred --------ccE------------------------EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccc-cccCccccee
Q 011216 317 --------EGI------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS-CNLGFRSYEW 363 (491)
Q Consensus 317 --------~~i------------------------~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~ 363 (491)
.++ ..++++|++.++++...+-...++.......... ..........
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 011 1467888888888776554333333320000000 0000000000
Q ss_pred ecee-ecCCCCcccccCCCCCeeEEEcccce-eeeeEEE---EecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecC
Q 011216 364 DYRW-MDYPPQARDLKHPCDQSVATYKGHSV-LRTLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 438 (491)
Q Consensus 364 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 438 (491)
.... ....+. ..+....+..+..... ....... .+...+++++.++++++.||.+++||..+|+.+..+..
T Consensus 441 ~~g~~~~~~~~----~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 441 NTAKFFNAEPP----KSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CCCEEECSSCC----CSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccccC----CCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 0000 000000 0000011111211110 0000000 11223445678899999999999999999999999874
Q ss_pred CC-CCeeeeEecCCCCeE-EEEEC----------------CCcEEEecCCC
Q 011216 439 HT-SPVRDCSWHPSQPML-VSSSW----------------DGDVVRWEFPG 471 (491)
Q Consensus 439 h~-~~v~~~~~s~~~~~l-~s~~~----------------Dg~i~iw~~~~ 471 (491)
.. ....-+.|..+|+.+ ++.+. .+.+.+|.+..
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 33 233456677888744 44332 36788888874
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=1.5e-09 Score=109.58 Aligned_cols=305 Identities=12% Similarity=0.066 Sum_probs=163.5
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC---CCceEEEEe------cCCeEEEEECCCCcccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYAS------MSPIVHIVDVGSGTMES 205 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~~~~------~dg~i~iwd~~~~~~~~ 205 (491)
++..|++++.|+.|..+|..+|+.+-......... ....+..+| ++. +++++ .++.|..||..+|+...
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~-~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHK-RSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTT-SCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCC-CCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 35678888899999999999997765543320100 011112222 444 44443 36899999999998765
Q ss_pred ccceecccccccc-------ccCCC--------CCceecEEEEEEcCCCCEEEEEecCCe-------------------E
Q 011216 206 LANVTEIHDGLDF-------SAADD--------GGYSFGIFSLKFSTDGRELVAGSSDDC-------------------I 251 (491)
Q Consensus 206 ~~~~~~~~~~~~~-------~~~~~--------~~h~~~v~~i~~s~~~~~l~~~~~dg~-------------------i 251 (491)
............+ ....- .++......+++.|++..++++..++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 4432110000000 00000 011111235788898888999887764 9
Q ss_pred EEEECCCCeeeEEEec--cC-------CCeEEEEEecCCCC---EEEEEeCCCeEEEEeCccccCCCcceeeeccc----
Q 011216 252 YVYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---- 315 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---- 315 (491)
..+|..+++.+-.+.. |. ..+...... .+++ .++.++.+|.++++|.+ +++.+......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRA----TGELLSAKGIVPQSW 352 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEEEEEESSCCSS
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECC----CCCEecccccccccc
Confidence 9999999998877653 22 112222221 2443 78899999999999987 55554221100
Q ss_pred ------------------------cc-----------cEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCC---Cc-ccccc
Q 011216 316 ------------------------LE-----------GITFIDSRGDGRYLISNGKDQAIKLWDIRKMS---SN-ASCNL 356 (491)
Q Consensus 316 ------------------------~~-----------~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~---~~-~~~~~ 356 (491)
.. .-..++++|+..++++...+....++...... .. .....
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL 432 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccccc
Confidence 00 01126788888888887666555554433210 00 00000
Q ss_pred CcccceeeceeecC---------CC-Cc--ccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEE
Q 011216 357 GFRSYEWDYRWMDY---------PP-QA--RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 357 ~~~~~~~~~~~~~~---------~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 424 (491)
... ...+.. ++ .. ..+....++.+-.+..+.. .....++..+.++++|+.||.|+.
T Consensus 433 g~~-----~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-------~~~g~~~tagglvf~gt~dg~l~a 500 (689)
T 1yiq_A 433 GLR-----TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-------FNGGTLSTAGNLVFEGSADGRVIA 500 (689)
T ss_dssp SSE-----ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-------CCCCEEEETTTEEEEECTTSEEEE
T ss_pred Ccc-----ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-------ccCccceECCCEEEEECCCCcEEE
Confidence 000 000000 00 00 0000111222222221110 011133446789999999999999
Q ss_pred EECCCccEEEEecCCCCC-eeeeEecCCCC-eEEEE
Q 011216 425 YDLVSGEQVAALKYHTSP-VRDCSWHPSQP-MLVSS 458 (491)
Q Consensus 425 wd~~~~~~~~~~~~h~~~-v~~~~~s~~~~-~l~s~ 458 (491)
||.++|+.+..++...+. ..-+.|..+|+ ++++.
T Consensus 501 ~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 501 YAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 999999999988754332 24577788888 44444
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.23 E-value=5e-08 Score=91.31 Aligned_cols=262 Identities=14% Similarity=0.091 Sum_probs=161.4
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceecccc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 214 (491)
++..+++++.++.|..+|..+++.+-......... ..... .+..+++++.++.|..+|..+++............
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~---~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL---SRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC---SCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE---cCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 45678888899999999999986654433221111 11111 24567788889999999999998765443221100
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCC----------e-EEEEEecCCCC
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGH 283 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~ 283 (491)
. ..+...+ ... +..+++++.++.|..+|..+++.+......... + ..... .+.
T Consensus 177 ~-------~~~~~~~----~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~ 240 (376)
T 3q7m_A 177 S-------LRGESAP----TTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNG 240 (376)
T ss_dssp ---------CCCCCC----EEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETT
T ss_pred e-------ecCCCCc----EEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECC
Confidence 0 0000111 111 346888888999999999999887665422110 1 11112 245
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccccee
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
.++.++.++.+..+|.. .++.+.... ......+.. ++..++.++.++.|..+|..+.+.
T Consensus 241 ~v~~~~~~g~l~~~d~~----tG~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~------------- 299 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLR----SGQIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT------------- 299 (376)
T ss_dssp EEEEECTTSCEEEEETT----TCCEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCE-------------
T ss_pred EEEEEecCcEEEEEECC----CCcEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcE-------------
Confidence 77888889999999987 566554443 223344444 356788888899999999987432
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCe
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 443 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 443 (491)
+-....... .. ...+.. .+..|++++.+|.|+++|..+|+.+.........+
T Consensus 300 ---------------------~w~~~~~~~-~~----~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~ 351 (376)
T 3q7m_A 300 ---------------------LWTQSDLLH-RL----LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGF 351 (376)
T ss_dssp ---------------------EEEECTTTT-SC----CCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCB
T ss_pred ---------------------EEeecccCC-Cc----ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 111110000 00 001111 25678889999999999999999988877544444
Q ss_pred ee-eEecCCCCeEEEEECCCcEEEec
Q 011216 444 RD-CSWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 444 ~~-~~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
.. ... .+..|+.++.||.|+.|+
T Consensus 352 ~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 352 QTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 32 222 245788889999999986
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.22 E-value=3.1e-08 Score=91.65 Aligned_cols=247 Identities=13% Similarity=0.100 Sum_probs=144.4
Q ss_pred eC--CCCceEEEEe-cCCeEEEEECCCCc-ccccccee---ccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-
Q 011216 177 LS--PDQRHLVYAS-MSPIVHIVDVGSGT-MESLANVT---EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD- 248 (491)
Q Consensus 177 ~s--p~~~~l~~~~-~dg~i~iwd~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d- 248 (491)
++ +++++|++.+ .++.|.++|+.+.. ...+.+.. +..... + ......+..+|+| .++++..+
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~--------g-~s~Ph~~~~~pdG-i~Vs~~g~~ 158 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS--------G-YSRLHTVHCGPDA-IYISALGNE 158 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH--------C-EEEEEEEEECSSC-EEEEEEEET
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc--------C-CCcccceeECCCe-EEEEcCCCc
Confidence 36 7888777654 56789999997541 11111111 110000 0 0135567888999 77766555
Q ss_pred -----CeEEEEECCCCeeeEEEeccC---CCeEEEEEecCCCCEEEEEe-------------------CCCeEEEEeCcc
Q 011216 249 -----DCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLIYSGS-------------------DDNLCKVWDRRC 301 (491)
Q Consensus 249 -----g~i~vwd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~~l~s~s-------------------~dg~i~iwd~~~ 301 (491)
|.|.++|..+.+.+.++.... ..-..+.|+ ++++.+++.. .+..|.+||+.
T Consensus 159 ~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~- 236 (462)
T 2ece_A 159 EGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR- 236 (462)
T ss_dssp TSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-
T ss_pred CCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-
Confidence 789999999999988886322 223457787 7778888874 36899999997
Q ss_pred ccCCCcceeeeccc--cccEEEEEE--cCCCCEEEEee------CCCcEEEeeCCCCCCccccccCcccceeecee-ecC
Q 011216 302 LNVKGKPAGVLMGH--LEGITFIDS--RGDGRYLISNG------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW-MDY 370 (491)
Q Consensus 302 ~~~~~~~~~~~~~~--~~~i~~i~~--sp~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~ 370 (491)
..+.+..+..- ......+.| +|+++++.++. .+++|.+|...... |.... +..
T Consensus 237 ---~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------------~~~~~vIdi 300 (462)
T 2ece_A 237 ---KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------------WNAEKVIEI 300 (462)
T ss_dssp ---TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------------EEEEEEEEE
T ss_pred ---CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------------eeEEEEEeC
Confidence 55555555432 123445555 99999988776 45678877664311 00000 000
Q ss_pred CCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-CCeEEEEECCC---ccEEEEecCCC------
Q 011216 371 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS---GEQVAALKYHT------ 440 (491)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iwd~~~---~~~~~~~~~h~------ 440 (491)
+.... ...+..... .....-.....+.+|+||++|++++. .+.|.+||+.. .+.+..+....
T Consensus 301 ~~~~v------~~~lp~~~~--~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~ 372 (462)
T 2ece_A 301 PAEPL------EGNLPEILK--PFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRAD 372 (462)
T ss_dssp CCEEC------CSSCCGGGG--GGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBC
T ss_pred CCccc------ccccccccc--ccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccc
Confidence 00000 000000000 00000011223357889999998877 67999999853 35555554220
Q ss_pred --------CCeeeeEecCCCCeEEEEE
Q 011216 441 --------SPVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 441 --------~~v~~~~~s~~~~~l~s~~ 459 (491)
+.-..++++|||++|+++.
T Consensus 373 ~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 373 HPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 1358899999999999887
No 233
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.20 E-value=5.1e-09 Score=96.85 Aligned_cols=200 Identities=15% Similarity=0.038 Sum_probs=129.5
Q ss_pred EEc--CCCCEEEEE-ECCCeEEEEECCCC---eEEEEEee----c-cCCceeEEEeEeCCCCceEEEEecC------CeE
Q 011216 131 QFS--ADGSLFVAG-FQASQIRIYDVERG---WKIQKDIL----A-KSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (491)
Q Consensus 131 ~~s--~dg~~l~~~-~~dg~i~vw~~~~~---~~~~~~~~----~-~~~~~~v~~l~~sp~~~~l~~~~~d------g~i 193 (491)
.++ +++++|++. ..++.|.|+|+.+. -.+.+.+. . +........+..+|+| .++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 447 888887764 46789999999754 12333221 0 1111245667889999 66665555 789
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-------------------cCCeEEEE
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-------------------SDDCIYVY 254 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-------------------~dg~i~vw 254 (491)
.++|.++.+.+........... --+.+.|+|+++.+++.. ...+|.+|
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~-------------~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~ 233 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQY-------------LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFW 233 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCC-------------CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEE
T ss_pred EEEECCCCeEEEEEccCCCCcc-------------ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEE
Confidence 9999999888766654322111 234678899999888874 36889999
Q ss_pred ECCCCeeeEEEecc-C-CCeEEEEE--ecCCCCEEEEEe------CCCeEEEEeCccccCCCcceee--ecc--------
Q 011216 255 DLEANKLSLRILAH-T-SDVNTVCF--GDESGHLIYSGS------DDNLCKVWDRRCLNVKGKPAGV--LMG-------- 314 (491)
Q Consensus 255 d~~~~~~~~~~~~~-~-~~v~~i~~--~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~--~~~-------- 314 (491)
|+.+++.+.++.-. . .....+.| + +++++++++. .+++|.+|..... ....... +..
T Consensus 234 D~~~~k~~~tI~vg~~g~~P~~i~f~~~-Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 234 DLRKRKRIHSLTLGEENRMALELRPLHD-PTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp ETTTTEEEEEEESCTTEEEEEEEEECSS-TTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCC
T ss_pred ECCCCcEeeEEecCCCCCccceeEeeEC-CCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCcccccccc
Confidence 99998877777542 1 23455656 6 6777776666 5668877665410 0011111 000
Q ss_pred --------ccccEEEEEEcCCCCEEEEeeC-CCcEEEeeCCC
Q 011216 315 --------HLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (491)
Q Consensus 315 --------~~~~i~~i~~sp~~~~l~~~~~-dg~i~iwd~~~ 347 (491)
-......|.++|||++|.++.. .+.|.+||+..
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0134678999999999877654 67899999864
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=115.26 Aligned_cols=183 Identities=12% Similarity=0.038 Sum_probs=107.7
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc
Q 011216 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
++..+++++.||.|+.||..+++.+.++.. +.+.+..+. .++.++++++.|+.|+.||.. +++.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~----tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSK----NNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC---------CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECC----CCceeeeeeccCc
Confidence 467899999999999999999998877765 455554454 456678888899999999986 5555444433221
Q ss_pred c-EE-EEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee
Q 011216 318 G-IT-FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 318 ~-i~-~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
. +. +..+. ++..+++++.++.|+.||..+++... .+..+..
T Consensus 81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w----------------------------------~~~~~~~-- 123 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ----------------------------------TLSSAFA-- 123 (369)
T ss_dssp HHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------------------
T ss_pred cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE----------------------------------EecCCCc--
Confidence 1 10 01111 34567788889999999998854322 2211110
Q ss_pred eeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCC---CeEEEEECCCcEEEecCCCC
Q 011216 396 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ---PMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~Dg~i~iw~~~~~ 472 (491)
..++|++..+++++.|+.|+.||..+|+.+..+..+. ....++.++. ..+++++.||.|+.||..++
T Consensus 124 --------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 124 --------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp -----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred --------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 1233467889999999999999999998876654221 2334444432 46777889999999999877
Q ss_pred CC
Q 011216 473 GE 474 (491)
Q Consensus 473 ~~ 474 (491)
+.
T Consensus 194 ~~ 195 (369)
T 2hz6_A 194 DV 195 (369)
T ss_dssp CE
T ss_pred cE
Confidence 54
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.17 E-value=4.6e-09 Score=100.68 Aligned_cols=285 Identities=14% Similarity=0.113 Sum_probs=174.0
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeecc--------------------------------C---C-ceeEEEeEeCC---
Q 011216 139 FVAGFQASQIRIYDVERGWKIQKDILAK--------------------------------S---L-RWTVTDTSLSP--- 179 (491)
Q Consensus 139 l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------------------------------~---~-~~~v~~l~~sp--- 179 (491)
+.+|+..|.++|+-+.++..+..+.... + . .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 5678888999999888876665542221 0 0 01112234444
Q ss_pred --CCceEEEEec-CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEE-c-CCCCEEEEEe--------
Q 011216 180 --DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-S-TDGRELVAGS-------- 246 (491)
Q Consensus 180 --~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-s-~~~~~l~~~~-------- 246 (491)
||++|.+... ++.|.+.|+.+.++..+..++... .+..+++ + |+++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~---------------~phg~~~~~~p~~~~v~~~~~~~~p~~~ 162 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK---------------GIHGLRPQKWPRSNYVFCNGEDETPLVN 162 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC---------------SEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC---------------CCcceeeeecCCCcEEEEecccccccCC
Confidence 8888888765 457999999998876655433211 4667887 4 8999998885
Q ss_pred ----------cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC------------------------
Q 011216 247 ----------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN------------------------ 292 (491)
Q Consensus 247 ----------~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg------------------------ 292 (491)
.++.+.+.|.++.+...++.--. ....++++ ++++++++.+.+.
T Consensus 163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~ 240 (595)
T 1fwx_A 163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE 240 (595)
T ss_dssp SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred CCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccc
Confidence 24679999999998887775322 35667787 6788888777543
Q ss_pred --------------eEEEEeCccccCCCcc-eeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCCcccccc
Q 011216 293 --------------LCKVWDRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNL 356 (491)
Q Consensus 293 --------------~i~iwd~~~~~~~~~~-~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 356 (491)
.|.+.|.+... +.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+......-..
T Consensus 241 ~~~~v~~Gk~~~i~~V~VID~~~~~--~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 241 IEKAIAAGDYQELNGVKVVDGRKEA--SSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHTCSEEETTEEEEECSGGG--CCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred eeEeccCCCeeEECcEEEEeCcccC--CceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 24455544110 122 222221 22345789999999877655 578899999986321000000
Q ss_pred CcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCC-------
Q 011216 357 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS------- 429 (491)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~------- 429 (491)
.+....+...... ...+..+|+|+|....+...|+.|.+||+..
T Consensus 318 ----------------------~~~~~v~~~v~vG-------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g 368 (595)
T 1fwx_A 318 ----------------------DPRSAVVAEPELG-------LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAG 368 (595)
T ss_dssp ----------------------CGGGGEEECCBCC-------SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHT
T ss_pred ----------------------CcccceEEEcCCC-------CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcc
Confidence 0000111111110 1123447888994334455599999999977
Q ss_pred ---ccEEEEecCCCCCe-----eeeEecCCCCeEEEEEC---CCcE----------EEecCCCC
Q 011216 430 ---GEQVAALKYHTSPV-----RDCSWHPSQPMLVSSSW---DGDV----------VRWEFPGN 472 (491)
Q Consensus 430 ---~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~~~---Dg~i----------~iw~~~~~ 472 (491)
.+.+..+..|-.+- ..+.++|||++|+++.. |+.+ .++|+.++
T Consensus 369 ~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 369 EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred cccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 45677776664432 34567899999998853 4431 77888443
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.11 E-value=3.2e-09 Score=97.51 Aligned_cols=268 Identities=15% Similarity=0.144 Sum_probs=162.3
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
...+.++...++|.+ ..++.+ |..+|. ++..+... ...........+. +..|.+++.++.|..+|.. ++.
T Consensus 59 ~~~~~~~~~~~~g~l-~v~t~~--l~~~d~-~g~~~~~~---~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 59 EIIECRPSIGKDGTI-YFGSDK--VYAINP-DGTEKWRF---DTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp GEEEECCEETTTTEE-CCSSCE--EEEECC-CGGGGGGS---CC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred CCcccceEEecCCcE-EEecCc--EEEECC-CCcEEEEE---ECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 345677888878764 444444 888885 44221111 1111111122222 5567778888999999987 554
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCC
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
........ ..+.++...+++. +++++.++.|..+|.. ++....+......+.++... .++.
T Consensus 129 ~~~~~~~~----------------~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d-~~g~ 189 (330)
T 3hxj_A 129 KWRFKTKK----------------AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG-KDGT 189 (330)
T ss_dssp EEEEECSS----------------CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTCC
T ss_pred EEEEcCCC----------------ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc-CCCE
Confidence 32222110 0234456666776 6677788999999998 77766665555667777774 5666
Q ss_pred EEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCccccee
Q 011216 284 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 363 (491)
Q Consensus 284 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 363 (491)
++ .++ +.|..+| . .+............+.++...++|. |..++.++.|..+|...
T Consensus 190 l~-v~t--~~l~~~d-~----~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g---------------- 244 (330)
T 3hxj_A 190 IY-FGS--DKVYAIN-P----DGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG---------------- 244 (330)
T ss_dssp EE-EES--SSEEEEC-T----TSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS----------------
T ss_pred EE-EEe--CEEEEEC-C----CCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC----------------
Confidence 54 444 7888998 4 5555555554455677888888875 55566677788887432
Q ss_pred eceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCe
Q 011216 364 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 443 (491)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v 443 (491)
..+..+...... ...+.+.+++ .|.+++.+|.|+.+|. +++.+..+......+
T Consensus 245 -------------------~~~~~~~~~~~~------~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~ 297 (330)
T 3hxj_A 245 -------------------TEKWRFKTGKRI------ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWII 297 (330)
T ss_dssp -------------------CEEEEEECSSCC------CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCC
T ss_pred -------------------CEeEEeeCCCCc------cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccc
Confidence 222222211110 0112233344 5777888888999996 788777776556677
Q ss_pred eeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 444 RDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 444 ~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.++...+++. |..++.+|.+++.......
T Consensus 298 ~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 298 ATPVIDENGT-IYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp SCCEECTTCC-EEEECTTSCEEEEEC----
T ss_pred cceEEcCCCE-EEEEcCCCeEEEEeccccc
Confidence 8888878886 5568899999988765543
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=1e-08 Score=94.03 Aligned_cols=260 Identities=15% Similarity=0.115 Sum_probs=157.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccccc
Q 011216 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (491)
.++.+..+|. |.+++.++.|..|| .+++..... ......+.++...+++.++ +++.+ |..+|. +++.....
T Consensus 23 ~~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~---~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~ 93 (330)
T 3hxj_A 23 SSPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF---KSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRF 93 (330)
T ss_dssp CCCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS---CGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGS
T ss_pred cCceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE---ecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEE
Confidence 4455666665 55666788899999 777543321 2233356777787777644 44433 888885 55443322
Q ss_pred ceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEE
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s 287 (491)
..... ......+. +..+.+++.++.|..+|.. ++.......+...+.++... +++. ++.
T Consensus 94 ~~~~~----------------~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~v 152 (330)
T 3hxj_A 94 DTKKA----------------IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IYV 152 (330)
T ss_dssp CC---------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EEE
T ss_pred ECCCC----------------cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EEE
Confidence 21110 11112222 4468888889999999998 77666665555556666664 4555 566
Q ss_pred EeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeecee
Q 011216 288 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 367 (491)
Q Consensus 288 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 367 (491)
++.++.|..+|.. +............+.++...+++.+++.. +.|..+| .+.
T Consensus 153 gt~~~~l~~~d~~-----g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g------------------- 204 (330)
T 3hxj_A 153 GSNDNYLYAINPD-----GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDG------------------- 204 (330)
T ss_dssp ECTTSEEEEECTT-----SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTS-------------------
T ss_pred EcCCCEEEEECCC-----CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCC-------------------
Confidence 7888999999973 33444444344556667777777755544 7799998 442
Q ss_pred ecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeeeeE
Q 011216 368 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 447 (491)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 447 (491)
..+..+.... ....++..+++|. |.+++.++.|..+|. +++.+..+......+..+.
T Consensus 205 ---------------~~~~~~~~~~------~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~ 261 (330)
T 3hxj_A 205 ---------------TEKWNFYAGY------WTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPV 261 (330)
T ss_dssp ---------------CEEEEECCSS------CCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCE
T ss_pred ---------------cEEEEEccCC------cceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccce
Confidence 1222222111 1122334455554 666777888998984 6777766665555556677
Q ss_pred ecCCCCeEEEEECCCcEEEecC
Q 011216 448 WHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 448 ~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
..+++ .|..++.+|.|..+|.
T Consensus 262 ~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 262 IGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp ECTTS-CEEEECTTCEEEEECT
T ss_pred EcCCC-eEEEecCCCCEEEECC
Confidence 76666 4666778888999985
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=6e-08 Score=93.03 Aligned_cols=251 Identities=11% Similarity=0.049 Sum_probs=154.9
Q ss_pred CCCCEEEEEEC-CCeEEEEECCCCeEEEEEeeccCCceeEEEeEe-C-CCCceEEEEe------------------cCCe
Q 011216 134 ADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL-S-PDQRHLVYAS------------------MSPI 192 (491)
Q Consensus 134 ~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~-s-p~~~~l~~~~------------------~dg~ 192 (491)
+||++|.+... ++.|.+.|+.+.+....+....+. .+..+++ + |+++++++++ .++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~--~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAK--GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCC--SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCC--CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 38888887665 567999999998665544222222 4778887 5 9999998885 3457
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC-----------------------
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----------------------- 249 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg----------------------- 249 (491)
+.++|.++.+......+... ...++++|+|+++++.+.+.
T Consensus 177 vtvID~~t~~v~~qI~Vgg~-----------------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~ 239 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGN-----------------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 239 (595)
T ss_dssp EEEEETTTTEEEEEEEESSC-----------------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred EEEEECCCCeEEEEEEeCCC-----------------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecc
Confidence 99999998776555443221 23467888888887777442
Q ss_pred ---------------eEEEEECCC--Cee-eEEEeccCCCeEEEEEecCCCCEEEE-EeCCCeEEEEeCccccC------
Q 011216 250 ---------------CIYVYDLEA--NKL-SLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCLNV------ 304 (491)
Q Consensus 250 ---------------~i~vwd~~~--~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s-~s~dg~i~iwd~~~~~~------ 304 (491)
.|.|.|..+ ++. +..+.. .....++.++ |+++++++ +..+.+|.++|+.....
T Consensus 240 ~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 240 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred ceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEc-CCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 367777776 444 334432 3356788998 66765555 45788999999973210
Q ss_pred --CCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCC
Q 011216 305 --KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 382 (491)
Q Consensus 305 --~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
........ .-......++|+|+|...++...|++|.+||+.+...... . ....
T Consensus 318 ~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~--g----------------------~~~~ 372 (595)
T 1fwx_A 318 DPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYA--G----------------------EKVD 372 (595)
T ss_dssp CGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHH--T----------------------CSCC
T ss_pred CcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhc--c----------------------cccc
Confidence 00111222 2234578899999995556677899999999865100000 0 0001
Q ss_pred CeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec---CCe----------EEEEECCCcc
Q 011216 383 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSC----------VYVYDLVSGE 431 (491)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~----------i~iwd~~~~~ 431 (491)
+.+..+..+-.... .........+|||++|++.+. |+. -.++|+..++
T Consensus 373 ~vi~kidV~yqpGh-~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 373 PIKDKLDVHYQPGH-LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp CEEEEEECSSCEEE-EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred eeEEEeeccccccc-ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 34444444321111 122234468899999999875 332 2889996554
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.03 E-value=1.4e-06 Score=77.06 Aligned_cols=251 Identities=11% Similarity=0.068 Sum_probs=146.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEE----EEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCCcccccccee
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 210 (491)
|++|..+.. +.|+.++++..... ..... .....+..++|+|++..|+.+. .++.|..++..++.......
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~--~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-- 75 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLH--IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR-- 75 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE--EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC--
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeec--CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE--
Confidence 345555543 47888888764210 01111 1112578999999776666554 46799999987654322110
Q ss_pred ccccccccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe
Q 011216 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s 289 (491)
. + -.....+++.+++..|+.+ ...+.|.++++..................+++.|.++.++++..
T Consensus 76 ~---~-----------~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 76 Q---D-----------LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp T---T-----------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred C---C-----------CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence 0 0 0157789999976655554 45678999998754332222222246789999843454444443
Q ss_pred C--CCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEE-eeCCCcEEEeeCCCCCCccccccCcccceeec
Q 011216 290 D--DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 365 (491)
Q Consensus 290 ~--dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 365 (491)
. .+.|..+++. +.....+ .........++++|++..|.. ....+.|.++|+....
T Consensus 142 ~~~~~~I~~~~~d-----g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------------- 200 (267)
T 1npe_A 142 NRDNPKIETSHMD-----GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------------- 200 (267)
T ss_dssp CSSSCEEEEEETT-----SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE----------------
T ss_pred CCCCcEEEEEecC-----CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc----------------
Confidence 3 4688888874 2222222 122345788999998766654 4456789999986411
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECCCccEEEEecCCC-CCe
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHT-SPV 443 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~-~~v 443 (491)
......+.. ... .++. ++..|+.+. ..+.|..+|..+++.+..+.... ...
T Consensus 201 ------------------~~~~~~~~~---~P~----gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p 253 (267)
T 1npe_A 201 ------------------RRKVLEGLQ---YPF----AVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253 (267)
T ss_dssp ------------------EEEEEECCC---SEE----EEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCC
T ss_pred ------------------eEEEecCCC---Cce----EEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcccccccc
Confidence 011111100 001 1112 344555554 56899999999999988886433 246
Q ss_pred eeeEecCCCC
Q 011216 444 RDCSWHPSQP 453 (491)
Q Consensus 444 ~~~~~s~~~~ 453 (491)
..+++.|++.
T Consensus 254 ~gi~~~~~~~ 263 (267)
T 1npe_A 254 YGITIALSQC 263 (267)
T ss_dssp CCEEEECSCC
T ss_pred ceeeecCccC
Confidence 7888888764
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.00 E-value=2.9e-07 Score=80.02 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=132.3
Q ss_pred eEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEE-EecCCeEEEEECCCCcc
Q 011216 127 AYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~-~~~dg~i~iwd~~~~~~ 203 (491)
...++|++|+.+.++.+. ++.|.++|+.+++.+....... +. ....+++. ++.|.. .-.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~~-fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-SY-FGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-TC-CEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-Cc-ceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 578999999755555443 6799999999997776654322 21 12244554 444544 44678999999998877
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC-----CCeEEEEEe
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFG 278 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~ 278 (491)
...+... ... ...+++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|.
T Consensus 99 ~~~i~~g-~~~-----------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~ 160 (266)
T 2iwa_A 99 IKNFTHQ-MKD-----------------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI 160 (266)
T ss_dssp EEEEECC-SSS-----------------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEECC-CCC-----------------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence 6554322 011 12355678777777778999999999988877765221 246788886
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc-------------cccEEEEEEcCCCCEE-EEeeCCCcEEEee
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYL-ISNGKDQAIKLWD 344 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~i~~sp~~~~l-~~~~~dg~i~iwd 344 (491)
++.+++....++.|.+.|.. +++.+..+... ......|+|+|+++.+ +++...+.|.+.+
T Consensus 161 --dg~lyvn~~~~~~V~vID~~----tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 161 --NGEVWANIWQTDCIARISAK----DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp --TTEEEEEETTSSEEEEEETT----TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred --CCEEEEecCCCCeEEEEECC----CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 46666666568899999997 66666665421 1356899999998655 5566778888888
Q ss_pred CCCC
Q 011216 345 IRKM 348 (491)
Q Consensus 345 ~~~~ 348 (491)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 8763
No 241
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.98 E-value=2.4e-08 Score=100.66 Aligned_cols=275 Identities=10% Similarity=0.028 Sum_probs=147.3
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEE
Q 011216 129 VSQFSA-DGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHI 195 (491)
Q Consensus 129 ~~~~s~-dg~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~i 195 (491)
.+++.+ +|++++.|+.+. .+.+||..++.-.........+.....++++.++++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 567777 889999887543 6889999876322111111112222334677889999999884 458999
Q ss_pred EECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cC-----CeEEEEECCCCeeeEEE----
Q 011216 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SD-----DCIYVYDLEANKLSLRI---- 265 (491)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~---- 265 (491)
||..+++......+... . .-.+++..++++.++.|+ .+ ..+.+||..+++....-
T Consensus 270 yd~~t~~W~~~~~~~~~----------R-----~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA----------R-----GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp EEGGGTEEEECCCCSSC----------C-----SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred ecCcCCceeECCCCCcc----------c-----cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 99987765444322111 0 112445667899999988 34 56999999887754320
Q ss_pred eccCCCeEEEEEecCCCCEEEEEeCCC---------eEEEEeCccccCCCcceeeecccc---------ccEEEEEEc-C
Q 011216 266 LAHTSDVNTVCFGDESGHLIYSGSDDN---------LCKVWDRRCLNVKGKPAGVLMGHL---------EGITFIDSR-G 326 (491)
Q Consensus 266 ~~~~~~v~~i~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~~~~~~---------~~i~~i~~s-p 326 (491)
......-....+. .++.+++.|+.+| .+..||.. ..........+. ..-.++.+. .
T Consensus 335 ~p~~~~~~~~~~~-~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~----~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~ 409 (656)
T 1k3i_A 335 NPMLTADKQGLYR-SDNHAWLFGWKKGSVFQAGPSTAMNWYYTS----GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAV 409 (656)
T ss_dssp GGGCCCCTTGGGT-TTCSCCEEECGGGCEEECCSSSEEEEEECS----TTCEEEEEEECEETTEECCCCBTCEEEEEETT
T ss_pred cccccccccceee-cCCceEEEECCCCcEEEecCccceeeeecC----CcceeecCCccccccccCCCCCCCceEeccCC
Confidence 0000000001111 3445555554443 56778875 222121111111 112344443 3
Q ss_pred CCCEEEEeeCCC-----------cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee
Q 011216 327 DGRYLISNGKDQ-----------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 395 (491)
Q Consensus 327 ~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (491)
++++++.|+.++ .|.+||..+.. -........
T Consensus 410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~-----------------------------------W~~~~~~~m-- 452 (656)
T 1k3i_A 410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-----------------------------------NTVFASNGL-- 452 (656)
T ss_dssp TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-----------------------------------EEEECTTCC--
T ss_pred CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-----------------------------------eeEEccCCC--
Confidence 677888887542 45666655421 111100000
Q ss_pred eeEEEEecCcccCCCcEEEEEecC-----------CeEEEEECCCccEEE--EecCCCCCeeeeEecCCCCeEEEEEC
Q 011216 396 TLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSW 460 (491)
Q Consensus 396 ~~~~~~~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~ 460 (491)
...+.....+..|++++++.|+.+ ..+.+||..+.+-.. .+...........+.|++++++.|+.
T Consensus 453 p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 453 YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 000000111234588999998764 468999987765332 12112222234556799999999885
No 242
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.96 E-value=2e-07 Score=93.82 Aligned_cols=307 Identities=12% Similarity=0.147 Sum_probs=172.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCce-------eE-EEeEeCCCCceEEEEecCCeEEEEECCCCcccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-------TV-TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-------~v-~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 207 (491)
+..|++++.++.|.-+|..+|+.+-+......... .+ ..+++ .+..+++++.|+.|..+|..+|+.....
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 45677778889999999999976655432211100 00 11122 3557788888999999999999876554
Q ss_pred ceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec------CCeEEEEECCCCeeeEEEeccC------------
Q 011216 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHT------------ 269 (491)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~------------ 269 (491)
........... ...++. . ++ .++++.. +|.|+.+|..+++.+-++....
T Consensus 144 ~~~~~~~~~~~-------~~~P~v----~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 144 QTTDPAKPYSI-------TGAPRV----V-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp ECSCTTSSCBC-------CSCCEE----E-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred ccCCCCCccee-------cCCCEE----E-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 43211100000 001111 1 34 4555543 5899999999999877664210
Q ss_pred -------------------CCeEEEEEecCCCCEEEEEeCCCe-------------------EEEEeCccccCCCcceee
Q 011216 270 -------------------SDVNTVCFGDESGHLIYSGSDDNL-------------------CKVWDRRCLNVKGKPAGV 311 (491)
Q Consensus 270 -------------------~~v~~i~~~~~~~~~l~s~s~dg~-------------------i~iwd~~~~~~~~~~~~~ 311 (491)
.....+++. +...+++.++.++. |..+|.. +++.+..
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----tG~~~W~ 285 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----TGKLAWH 285 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----TCCEEEE
T ss_pred ccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----CCceeeE
Confidence 011236775 56678888877663 8889987 6776655
Q ss_pred ecc--cc-------ccEEEEEEcCCCC---EEEEeeCCCcEEEeeCCCCCCccccccCcccceeece-------eecCCC
Q 011216 312 LMG--HL-------EGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR-------WMDYPP 372 (491)
Q Consensus 312 ~~~--~~-------~~i~~i~~sp~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 372 (491)
+.. |. .+.....+..+|+ .++.++.+|.++++|..+++......... ..|... .+....
T Consensus 286 ~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~--~~w~~~~d~~~g~p~~~~~ 363 (668)
T 1kv9_A 286 YQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGK--VTWAEKVDLATGRPVEAPG 363 (668)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC--CCSEEEECTTTCCEEECTT
T ss_pred eecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccc--cccccccccccCCcccccc
Confidence 543 21 2232233333665 68899999999999999876553322111 001100 000000
Q ss_pred CcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE------------------------------------E
Q 011216 373 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT------------------------------------G 416 (491)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~------------------------------------g 416 (491)
... ..+....+.+..... ....++++|+..++++ .
T Consensus 364 ~~~-----~~~~~~~~p~~~G~~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 364 VRY-----EKEPIVMWPSPFGAH----NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TTC-----SSSCEEESSCTTCSS----CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred ccc-----cCCeeEECCCCcccc----CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 000000000000000 0001233333333332 1
Q ss_pred ecCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 417 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
..+|.|+.||+.+++.+.....+ .+.....+...+.+++.++.||.|+.||..+++.
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 23488999999999998877643 3344445556778899999999999999988764
No 243
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.91 E-value=5e-06 Score=85.95 Aligned_cols=289 Identities=7% Similarity=0.056 Sum_probs=170.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec----cCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
...|.++...++|.+.+ |+.++-|.+||..++......... .-....|.++...++|.+.+ |+.+ -|.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 46789999888887554 544445889998876332221110 01134699999998887554 4555 58889987
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec-------cCCCe
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSDV 272 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v 272 (491)
++............. .-....|.++...++|. |.+|+.++-|..|+..++... .+.. ....|
T Consensus 291 ~~~~~~~~~~~~~~~---------~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V 359 (795)
T 4a2l_A 291 TDSFASYSSNPVENG---------SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVV 359 (795)
T ss_dssp TTEEEEECCCTTSTT---------SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSE
T ss_pred CCeEEEEecCCCCCC---------CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCee
Confidence 765433221110000 01223699999999887 667777777999987665432 2211 23468
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec--------cccccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--------GHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd 344 (491)
.++... .+++ |..|+.++-|..||.. ......... .....|.++...++++.|..|+.++-|.+||
T Consensus 360 ~~i~~d-~~g~-lWiGt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 360 SCIVED-KDKN-LWIGTNDGGLNLYNPI----TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp EEEEEC-TTSC-EEEEESSSCEEEECTT----TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred EEEEEC-CCCC-EEEEECCCCeEEEcCC----CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 888874 5555 5567778788899875 222211111 1235689999988888566777777799999
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 424 (491)
..+.. +..+...... .....+++....++|.+.+. +.+ .|.+
T Consensus 434 ~~~~~-----------------------------------~~~~~~~~~~-l~~~~v~~i~~d~~g~lwig-t~~-Gl~~ 475 (795)
T 4a2l_A 434 RNSGQ-----------------------------------VENFNQRNSQ-LVNENVYAILPDGEGNLWLG-TLS-ALVR 475 (795)
T ss_dssp TTTCC-----------------------------------EEEECTTTSC-CSCSCEEEEEECSSSCEEEE-ESS-CEEE
T ss_pred CCCCc-----------------------------------EEEeecCCCC-cCCCeeEEEEECCCCCEEEE-ecC-ceeE
Confidence 87632 1111110000 00001122233445664444 444 4899
Q ss_pred EECCCccEEEEec------CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 425 YDLVSGEQVAALK------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 425 wd~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
||..+++...... .....|.++...++|.+.+.+. + -|..|+...+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~ 527 (795)
T 4a2l_A 476 FNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGL 527 (795)
T ss_dssp EETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETT
T ss_pred EeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCC
Confidence 9987765433221 1235789999999998666543 4 4777876543
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=3.8e-07 Score=79.26 Aligned_cols=199 Identities=9% Similarity=0.028 Sum_probs=128.5
Q ss_pred EEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeEEEecc-CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC
Q 011216 230 IFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 230 v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
...+.|++++..+++.+. ++.|.++|+.+++.+..+.-. ......+++. ++++.++.-.++.+.++|.. +.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----t~ 96 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----TL 96 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----TT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----CC
Confidence 568899998754444433 579999999999988876522 2233456664 34555666678999999987 56
Q ss_pred cceeeeccc-cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCee
Q 011216 307 KPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 307 ~~~~~~~~~-~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
+.+..+... ..+ ..+++||+.++++..++.|.++|..+.+ .+
T Consensus 97 ~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~----------------------------------v~ 139 (266)
T 2iwa_A 97 SNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFK----------------------------------LI 139 (266)
T ss_dssp EEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCC----------------------------------EE
T ss_pred cEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCc----------------------------------EE
Confidence 666666422 222 2345577777776678899999998743 22
Q ss_pred EEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC-------------CCCeeeeEecCCC
Q 011216 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPSQ 452 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~s~~~ 452 (491)
..+.-......+ ...+...+. +|.+.+....++.|.+.|..+++.+..+... ....+.++|+|++
T Consensus 140 ~~I~Vg~~~~p~-~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 140 KKHNVKYNGHRV-IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp EEEECEETTEEC-CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred EEEEECCCCccc-ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 222211100000 001111233 5655555556789999999999998888631 1245899999998
Q ss_pred C-eEEEEECCCcEEEecCCCCC
Q 011216 453 P-MLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 453 ~-~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+ +++++...+.|.+-++....
T Consensus 218 ~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 218 KRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TEEEEEETTCSEEEEEEEEECC
T ss_pred CEEEEECCCCCeEEEEEEeccc
Confidence 7 55556678889998887654
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.88 E-value=2e-06 Score=78.45 Aligned_cols=201 Identities=15% Similarity=0.115 Sum_probs=122.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecc-----------------CCceeEEEeEeCC-CCceEEEEe
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----------------SLRWTVTDTSLSP-DQRHLVYAS 188 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----------------~~~~~v~~l~~sp-~~~~l~~~~ 188 (491)
..+++|+++|+++.++..++.|..|+..++... ...... .....+..+++.+ +++ |+++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 456889999997888888999999998765322 211110 0112578899998 555 55555
Q ss_pred cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEec-----------------CCe
Q 011216 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSS-----------------DDC 250 (491)
Q Consensus 189 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~-----------------dg~ 250 (491)
..+.|..+|..++....+..... + ........+++.+ +|+..++-.. ++.
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~---~---------~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVD---G---------VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEET---T---------EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCCCEEEEeCCCCEEEEecccCC---C---------CcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 55668888877654322211110 0 0011467899999 9986665432 367
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEE-eCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCC
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR 329 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~ 329 (491)
|..+|..+++..... ..-...+.++++ ++++.|+.+ +..+.|.+|++.... .+. ...+..... ...+++.++|+
T Consensus 167 v~~~d~~~~~~~~~~-~~~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~-~~~-~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 167 LIKYDPSTKETTLLL-KELHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPK-KGT-AEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEEETTTTEEEEEE-EEESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTT-TTC-EEEEEECSS-EEEEEECTTSC
T ss_pred EEEEeCCCCEEEEec-cCCccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCc-CCc-cceEEeCCC-CCCeEECCCCC
Confidence 999998777643322 222345789997 677755544 566899999986221 111 111111122 67889999998
Q ss_pred EEEEeeC----------CCcEEEeeCC
Q 011216 330 YLISNGK----------DQAIKLWDIR 346 (491)
Q Consensus 330 ~l~~~~~----------dg~i~iwd~~ 346 (491)
+.++... .+.|..+|..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred EEEEecCcccccccCCCccEEEEECCC
Confidence 7766544 3556677653
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.88 E-value=6.3e-07 Score=88.24 Aligned_cols=310 Identities=12% Similarity=0.099 Sum_probs=165.0
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCeEEEEEeeccCCc-e------e-EEEeEeCCCCceEEEEecCCeEEEEECCCCcccc
Q 011216 136 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR-W------T-VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 136 g~~l~~~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~-~------~-v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (491)
+..+.+++. ++.|.-+|. .+|+.+-+........ . . -..++. .+..+++++.|+.|..+|..+|+...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666666 788999999 8886665433221100 0 0 011122 35677888889999999999998765
Q ss_pred ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec------CCeEEEEECCCCeeeEEEeccCCC--------
Q 011216 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKLSLRILAHTSD-------- 271 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~-------- 271 (491)
.........+... ...++ .. ++ .+++++. ++.|+.+|..+++.+-++......
T Consensus 140 ~~~~~~~~~~~~~-------~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~ 206 (571)
T 2ad6_A 140 EVEVCDPKVGSTL-------TQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKD 206 (571)
T ss_dssp EEECCCGGGTCBC-------CSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred EecCCCCCcccee-------ccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcc
Confidence 5443221100000 00111 11 34 5566554 789999999999987665432110
Q ss_pred ------------------------------eEEEEEecCCCCEEEEEeCC----------------CeEEEEeCccccCC
Q 011216 272 ------------------------------VNTVCFGDESGHLIYSGSDD----------------NLCKVWDRRCLNVK 305 (491)
Q Consensus 272 ------------------------------v~~i~~~~~~~~~l~s~s~d----------------g~i~iwd~~~~~~~ 305 (491)
...+++. +....++.++.+ +.|..+|.+ +
T Consensus 207 ~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d-~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----t 281 (571)
T 2ad6_A 207 FNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD-PKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----T 281 (571)
T ss_dssp TTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----T
T ss_pred cccccccccccccccccCcccceecCCCCeeeeEEEc-CCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----C
Confidence 0124554 444566666532 358888887 6
Q ss_pred Ccceeeecc--c--------cccEEEEEEcCCCC---EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCC
Q 011216 306 GKPAGVLMG--H--------LEGITFIDSRGDGR---YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 372 (491)
Q Consensus 306 ~~~~~~~~~--~--------~~~i~~i~~sp~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
++.+..++. | ..++. +...++|+ .++.++.+|.+.++|..+++.......... ..|.. .+...
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~-~~w~~-~~d~~- 357 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA-VNVFK-KVDLK- 357 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT-CCSEE-EECTT-
T ss_pred CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC-ccccc-ccccc-
Confidence 666555432 1 12222 22234674 577888899999999988765433221110 00000 00000
Q ss_pred Cccccc------CCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-----------------------------
Q 011216 373 QARDLK------HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS----------------------------- 417 (491)
Q Consensus 373 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~----------------------------- 417 (491)
....+. .+..+......+..... -...++++|+..++++..
T Consensus 358 ~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~----~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 433 (571)
T 2ad6_A 358 TGTPVRDPEFATRMDHKGTNICPSAMGFH----NQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp TCSEEECGGGCCCTTCCEEEESSCTTCSS----CSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CCceecccccCCCCCCCceEECCCCcccc----CCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence 000000 00000000000000000 001234555555555543
Q ss_pred --------cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 418 --------HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 418 --------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+|.|+.||+.+++.+.++... ..+....+...+..++.++.||.|+.||..+++.
T Consensus 434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 3578999999999998887632 2333333344566777889999999999988764
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.88 E-value=9.5e-07 Score=86.94 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=117.5
Q ss_pred CCEEEEEEC-CCeEEEEEC-CCCeEEEEEeeccCCc--------eeEEEeEeCCCCce----EEEEecCCeEEEEECCCC
Q 011216 136 GSLFVAGFQ-ASQIRIYDV-ERGWKIQKDILAKSLR--------WTVTDTSLSPDQRH----LVYASMSPIVHIVDVGSG 201 (491)
Q Consensus 136 g~~l~~~~~-dg~i~vw~~-~~~~~~~~~~~~~~~~--------~~v~~l~~sp~~~~----l~~~~~dg~i~iwd~~~~ 201 (491)
+..|.+++. ++.|.-+|. .+|+.+-+........ .....++++|.+.. |++++.|+.|.-+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 445666666 788999999 8886665443221100 00122455444444 888889999999999999
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe------cCCeEEEEECCCCeeeEEEeccCCC----
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRILAHTSD---- 271 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~---- 271 (491)
+............+... ...++ +. ++ .+++++ .+|.|+.+|..+++.+-++......
T Consensus 142 ~~~W~~~~~~~~~~~~~-------~ssP~----v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTL-------TIAPY----VV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp CEEEEEECCCGGGTCBC-------CSCCE----EE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CEEEeecCCCCCcccee-------ecCCE----EE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 87654433221100000 00011 11 34 455555 3799999999999987665432111
Q ss_pred ---------------------------------e-EEEEEecCCCCEEEEEeCC----------------CeEEEEeCcc
Q 011216 272 ---------------------------------V-NTVCFGDESGHLIYSGSDD----------------NLCKVWDRRC 301 (491)
Q Consensus 272 ---------------------------------v-~~i~~~~~~~~~l~s~s~d----------------g~i~iwd~~~ 301 (491)
+ ..+++. +...+++.++.+ +.|..+|..
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~- 286 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD- 286 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-
Confidence 0 134454 456677777655 378888887
Q ss_pred ccCCCcceeeecccc----------ccEEEEEEc-CCC---CEEEEeeCCCcEEEeeCCCCCCccc
Q 011216 302 LNVKGKPAGVLMGHL----------EGITFIDSR-GDG---RYLISNGKDQAIKLWDIRKMSSNAS 353 (491)
Q Consensus 302 ~~~~~~~~~~~~~~~----------~~i~~i~~s-p~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 353 (491)
+++.+..++... .++. +... .+| +.++.++.+|.+.++|.++++....
T Consensus 287 ---TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 287 ---TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp ---TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ---CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 666665544221 2222 2222 467 4677788999999999988765443
No 248
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.88 E-value=5e-06 Score=71.79 Aligned_cols=210 Identities=10% Similarity=0.087 Sum_probs=135.3
Q ss_pred cccCCCCceEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 119 PVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 119 ~~~~h~~~v~~~~~s~dg~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
.+.+....+..++|+|+++.|+ +...++.|...|.. +..+.... ..+. ...-.|++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-LDFV-KDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-CSSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-cCCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 4556677899999999876555 56678899999988 65555442 2222 2577888999998777665678899998
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC---CCeeeEEEe-------c
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRIL-------A 267 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~-------~ 267 (491)
+.............. .+. ..........++|+|+++.|+++.......+|.+. ....+..+. .
T Consensus 98 v~~~~~i~~~~~~~~----~~~---~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 98 LTPNSEVKILKKIKI----PLQ---ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp ECTTCCEEEEEEEEC----CCS---SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred cCCCCeeeeeeeecc----ccc---cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 876543111111110 000 01123357899999999878777765555555543 111122221 1
Q ss_pred cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc---------cccEEEEEEcCCCCEEEEeeCCC
Q 011216 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH---------LEGITFIDSRGDGRYLISNGKDQ 338 (491)
Q Consensus 268 ~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~i~~i~~sp~~~~l~~~~~dg 338 (491)
+...+.++++.|..+++++.......+.++|.. ++.+..+.-. ......|+|.++|+..++ +..+
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n 244 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN 244 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc
Confidence 334678999998888888888888999999974 4444433221 125678999999985555 5666
Q ss_pred cEEEee
Q 011216 339 AIKLWD 344 (491)
Q Consensus 339 ~i~iwd 344 (491)
.++.+.
T Consensus 245 ~~y~f~ 250 (255)
T 3qqz_A 245 RFYRFT 250 (255)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 566654
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.87 E-value=3.7e-07 Score=91.87 Aligned_cols=166 Identities=15% Similarity=0.215 Sum_probs=98.5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCC-ceeEEEeEeCC--CCceEEEEec------CCeEEEEECCCCccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESL 206 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~~l~~sp--~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 206 (491)
+..|++++.|+.|..+|..+|+.+-........ ...+ .-+| .+..++++.. ++.|..+|..+|+....
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~---~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSI---TGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBC---CSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCccee---cCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 457888889999999999999766554332110 0111 1112 1334454433 58999999999988655
Q ss_pred cceecccccccc-------ccCC-CC-------CceecEEEEEEcCCCCEEEEEecCC-------------------eEE
Q 011216 207 ANVTEIHDGLDF-------SAAD-DG-------GYSFGIFSLKFSTDGRELVAGSSDD-------------------CIY 252 (491)
Q Consensus 207 ~~~~~~~~~~~~-------~~~~-~~-------~h~~~v~~i~~s~~~~~l~~~~~dg-------------------~i~ 252 (491)
...........+ .... .. ++......+++.++...++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 433110000000 0000 00 1111223468888888888887766 499
Q ss_pred EEECCCCeeeEEEec--cC-------CCeEEEEEecCCCC---EEEEEeCCCeEEEEeCccccCCCcce
Q 011216 253 VYDLEANKLSLRILA--HT-------SDVNTVCFGDESGH---LIYSGSDDNLCKVWDRRCLNVKGKPA 309 (491)
Q Consensus 253 vwd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~ 309 (491)
.+|..+++.+-.+.. |. .+.....+. .+++ .++.++.+|.++++|.. +++.+
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~-~~G~~~~~v~~~~~~G~l~~lD~~----tG~~l 337 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN-IDGKPRKVLMQAPKNGFFYVLDRT----NGKLI 337 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETT----TCCEE
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEec-cCCcEEEEEEEECCCCEEEEEECC----CCCEe
Confidence 999999998776653 22 222222222 2443 68899999999999987 55555
No 250
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.87 E-value=8.1e-06 Score=84.36 Aligned_cols=286 Identities=11% Similarity=0.092 Sum_probs=169.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccc
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~ 206 (491)
|.++...++|++.+ |+.++.|..|+..++.... .. .......|.++...+++.+.+ ++.++-+.+||..+++....
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~-~~-~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEK-VI-PILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEE-CC-----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEE-ec-CCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 88898888886555 6665568899987763322 11 111234688888888777554 44444588899877654332
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec-------cCCCeEEEEEec
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSDVNTVCFGD 279 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~i~~~~ 279 (491)
......... -....|.++...++|. |..|+.+| |.+||..+++....... ....|.++...
T Consensus 251 ~~~~~~~~~---------l~~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D- 318 (795)
T 4a2l_A 251 LHSPSNPKS---------ISSNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD- 318 (795)
T ss_dssp CCCTTCTTS---------CSCSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-
T ss_pred ecCCCCccc---------cCCCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-
Confidence 211000000 0123699999998887 55555555 89999887765332211 23568899884
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-------cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCcc
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 352 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 352 (491)
.+++ |..|+.++-|..|+.... . ...+. .....|.++...++|. |..|+.++-|..||..+..
T Consensus 319 ~~g~-lWigt~~~Gl~~~~~~~~----~-~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~--- 388 (795)
T 4a2l_A 319 SQGG-MWLGTYFGGLNYYHPIRN----R-FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQR--- 388 (795)
T ss_dssp TTSC-EEEEESSSCEEEECGGGG----S-SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCC---
T ss_pred CCcC-EEEEECCCCeEEeCCCcc----c-ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCc---
Confidence 5565 556777778888886421 1 11111 1235689999988887 5557777779999977521
Q ss_pred ccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccc-eee--eeEEEEecCcccCCCcEEEEEecCCeEEEEECCC
Q 011216 353 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLR--TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
+..+.... ... .....+.+....+++++|.+|+.++.|..||..+
T Consensus 389 --------------------------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~ 436 (795)
T 4a2l_A 389 --------------------------------FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS 436 (795)
T ss_dssp --------------------------------EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred --------------------------------EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence 12221100 000 0000112223344677577788877899999987
Q ss_pred ccEEEEec----CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 430 GEQVAALK----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 430 ~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
++...... .....|.++...++|.+.+.+ .+| |.+|+..++
T Consensus 437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~ 481 (795)
T 4a2l_A 437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQR 481 (795)
T ss_dssp CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTT
T ss_pred CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCC
Confidence 76443221 234578999998888765544 444 788886653
No 251
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.87 E-value=5.9e-07 Score=81.97 Aligned_cols=253 Identities=8% Similarity=0.057 Sum_probs=144.0
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccC----CCCCceecEEEEEEcC-CCCEEEEE
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA----DDGGYSFGIFSLKFST-DGRELVAG 245 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~i~~s~-~~~~l~~~ 245 (491)
...+++|.+++++++++..++.|..|+..++.......... ......... ........+..+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASP-YWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCT-TCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccc-cccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 35678899999988888889999999987655432111000 000000000 0000112478899998 564 6666
Q ss_pred ecCCeEEEEECCCCeeeEEEec-----cCCCeEEEEEecC-CCCEEEEEeC-----------------CCeEEEEeCccc
Q 011216 246 SSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDE-SGHLIYSGSD-----------------DNLCKVWDRRCL 302 (491)
Q Consensus 246 ~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~i~~~~~-~~~~l~s~s~-----------------dg~i~iwd~~~~ 302 (491)
...+.|..+|..++.. ..+.. .....+.+++. + +++++++-.. ++.|..||..
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-- 173 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-- 173 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT--
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCC--
Confidence 5556688898776543 22211 12346889996 6 7777666432 3678888864
Q ss_pred cCCCcceeeeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCC
Q 011216 303 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 381 (491)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
.+. +..+.........|+++|+++.|+++ ...+.|.+|++.....
T Consensus 174 --~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~------------------------------- 219 (322)
T 2fp8_A 174 --TKE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK------------------------------- 219 (322)
T ss_dssp --TTE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-------------------------------
T ss_pred --CCE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-------------------------------
Confidence 222 22222222344678999999866555 5567899999875210
Q ss_pred CCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec----------CCeEEEEECCCccEEEEecCCC----CCeeeeE
Q 011216 382 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYHT----SPVRDCS 447 (491)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~----------dg~i~iwd~~~~~~~~~~~~h~----~~v~~~~ 447 (491)
.....+.... . . ..++++++|++.++... .+.|..+|. .++.+..+.... ..++.++
T Consensus 220 -~~~~~~~~~~--g-P----~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 220 -GTAEVLVKIP--N-P----GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp -TCEEEEEECS--S-E----EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEE
T ss_pred -CccceEEeCC--C-C----CCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEE
Confidence 0011111000 0 1 12255668886666544 467888887 477777665332 3466777
Q ss_pred ecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 448 WHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 448 ~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+ .++.++++...++.|.++++....
T Consensus 291 ~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 291 E-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp E-ETTEEEEECSSCSEEEEEEC----
T ss_pred E-eCCEEEEeecCCCceEEEeccccc
Confidence 6 356666666678889999876543
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.86 E-value=3.5e-07 Score=78.47 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=122.9
Q ss_pred eEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEEEEECCCCcc
Q 011216 127 AYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTM 203 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~iwd~~~~~~ 203 (491)
...+.|+ ++.+..+.+.+| .|+++|+.+++.+........ .......++++.|... -.++.+.++|.++.+.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~----~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR----YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT----CCEEEEEEETTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc----cceeEEEEeCCEEEEEEeeCCEEEEEECccCcE
Confidence 4678898 677777777765 899999999987776543322 2222222345455544 4588999999999887
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEecc--C---CCeEEEEEe
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--T---SDVNTVCFG 278 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~---~~v~~i~~~ 278 (491)
...+.... ....+++|++.|+.+..++.|.++|..+.+.+.++.-. . ..++.+.|.
T Consensus 120 ~~ti~~~~-------------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 120 VRSFNYDG-------------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EEEEECSS-------------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EEEEECCC-------------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 66554321 11233356777777777888999999999888776532 1 345678885
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc------------cccEEEEEEcCCCCEEEEeeCC
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH------------LEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~------------~~~i~~i~~sp~~~~l~~~~~d 337 (491)
++.+++..-.+..|.+.|.. +++.+..+... ....+.|+++|+++.|++.+..
T Consensus 181 --~G~lyan~w~~~~I~vIDp~----tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 181 --DGEIFANVWQTNKIVRIDPE----TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp --TTEEEEEETTSSEEEEECTT----TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred --CCEEEEEEccCCeEEEEECC----CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 56666666678899999987 66655554321 2356899999998887777653
No 253
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=1.2e-05 Score=71.10 Aligned_cols=232 Identities=11% Similarity=0.006 Sum_probs=133.4
Q ss_pred ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCCe
Q 011216 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK 260 (491)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~~ 260 (491)
++|+.+.. +.|+.+++............... .....+..++|++++..|+.+. .++.|..+++....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~ 69 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLH-----------IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE 69 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEE-----------EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeec-----------CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence 45666553 47888888765432111000000 0012577899999766665554 56899999997665
Q ss_pred eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEeeC---
Q 011216 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK--- 336 (491)
Q Consensus 261 ~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~--- 336 (491)
....+.........+++.+.++.++++-...+.|.++++. +.....+ .........++++|++..|..+..
T Consensus 70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-----g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-----GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-----CCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 4333323335678999974445566666677899999985 2222222 222245689999997665554443
Q ss_pred CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEE
Q 011216 337 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 416 (491)
Q Consensus 337 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 416 (491)
.+.|..+++.... ...+.... . .....+++++++..|+.+
T Consensus 145 ~~~I~~~~~dg~~-----------------------------------~~~~~~~~-~----~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 145 NPKIETSHMDGTN-----------------------------------RRILAQDN-L----GLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp SCEEEEEETTSCC-----------------------------------CEEEECTT-C----SCEEEEEEETTTTEEEEE
T ss_pred CcEEEEEecCCCC-----------------------------------cEEEEECC-C----CCCcEEEEcCCCCEEEEE
Confidence 3578787765411 11111000 0 111233566777666555
Q ss_pred e-cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEE-CCCcEEEecCCCCC
Q 011216 417 S-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 473 (491)
Q Consensus 417 ~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~~~~~ 473 (491)
. ..+.|.++|+........+.. ......++.. +..|+.+. ..+.|.+++..++.
T Consensus 185 d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC
Confidence 4 467899999976544433332 2334566654 45555555 56889999987654
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=6.1e-06 Score=81.24 Aligned_cols=317 Identities=10% Similarity=0.034 Sum_probs=156.0
Q ss_pred EEEcCCCCE----EEEEECCCeEEEEECCCCeEEEEEeeccC-CceeEEE-eEeCCCCceEEEEe------cCCeEEEEE
Q 011216 130 SQFSADGSL----FVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTD-TSLSPDQRHLVYAS------MSPIVHIVD 197 (491)
Q Consensus 130 ~~~s~dg~~----l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~~v~~-l~~sp~~~~l~~~~------~dg~i~iwd 197 (491)
++++|++.. |+.++.|+.|.-+|..+|+.+-+...... ....+.+ ..+ .++ .+++++ .++.|..+|
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEE
Confidence 455444444 78888899999999999976655432210 0001111 011 134 445544 378999999
Q ss_pred CCCCccccccceecccccc------cccc-------------CCC-CCce-ecE-EEEEEcCCCCEEEEEecC-------
Q 011216 198 VGSGTMESLANVTEIHDGL------DFSA-------------ADD-GGYS-FGI-FSLKFSTDGRELVAGSSD------- 248 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~------~~~~-------------~~~-~~h~-~~v-~~i~~s~~~~~l~~~~~d------- 248 (491)
..+|+.............. .+.. ... -.+. ..+ ..+++.++...++.+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 9999876544332111000 0000 000 0000 001 134666777777777655
Q ss_pred ---------CeEEEEECCCCeeeEEEec--cCC-------CeEEEEEecCCC---CEEEEEeCCCeEEEEeCccccCCCc
Q 011216 249 ---------DCIYVYDLEANKLSLRILA--HTS-------DVNTVCFGDESG---HLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 249 ---------g~i~vwd~~~~~~~~~~~~--~~~-------~v~~i~~~~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~ 307 (491)
+.|..+|..+++.+-.+.. |.. ...-+.....++ ..++.++.+|.+.++|.+ +++
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~ 344 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRT----DGA 344 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETT----TCC
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECC----CCC
Confidence 3899999999998766653 211 111122211345 567788999999999987 555
Q ss_pred ceeeeccc-------------cccE--------------------------EEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 308 PAGVLMGH-------------LEGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 308 ~~~~~~~~-------------~~~i--------------------------~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
.+...... ..++ ..++++|+..++++...+-...++..+..
T Consensus 345 ~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 424 (599)
T 1w6s_A 345 LVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP 424 (599)
T ss_dssp EEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC
T ss_pred EeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc
Confidence 54433210 0011 24677888888877765543333222110
Q ss_pred CCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceee-eeEEE---EecCcccCCCcEEEEEecCCeEEE
Q 011216 349 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIRC---HFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~s~~~~~l~~g~~dg~i~i 424 (491)
........ ........ .+.......+....+..+....... ..... .+.......+.+++.++.||.++.
T Consensus 425 ~~~g~~~~-----g~~~~~~~-~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 425 YKAGQFFV-----GATLNMYP-GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp CCTTSCCC-----CEEEEEEE-CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred ccCCccee-----cccceecc-CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEE
Confidence 00000000 00000000 0000000000111222222111000 00000 011112235778888999999999
Q ss_pred EECCCccEEEEecCCCCCe-eeeEecCCCC-eEEEE
Q 011216 425 YDLVSGEQVAALKYHTSPV-RDCSWHPSQP-MLVSS 458 (491)
Q Consensus 425 wd~~~~~~~~~~~~h~~~v-~~~~~s~~~~-~l~s~ 458 (491)
||.++|+.+.+++...+.+ .-+.+..+|+ ++++.
T Consensus 499 ~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 499 RDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 9999999998887443222 2355666887 45443
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.80 E-value=2.3e-06 Score=84.29 Aligned_cols=304 Identities=11% Similarity=0.062 Sum_probs=151.2
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC--CCceEEEEec------CCeEEEEECCCCcccccc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASM------SPIVHIVDVGSGTMESLA 207 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 207 (491)
+..|++++.|+.|..+|..+|+.+-+..... +... ..+.-+| .+..+++++. ++.|..+|..+|+.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~-~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVG-STLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGT-CBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCcc-ceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999997665543221 1000 0111122 2334555554 789999999999876544
Q ss_pred ceecccccc---------------------ccccCC-CCCceecEEEEEEcCCCCEEEEEecC----------------C
Q 011216 208 NVTEIHDGL---------------------DFSAAD-DGGYSFGIFSLKFSTDGRELVAGSSD----------------D 249 (491)
Q Consensus 208 ~~~~~~~~~---------------------~~~~~~-~~~h~~~v~~i~~s~~~~~l~~~~~d----------------g 249 (491)
......... .+.... ..+-......+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 332111000 000000 00000011235666766666666532 3
Q ss_pred eEEEEECCCCeeeEEEec--cCC----CeEEEEEec--CCC---CEEEEEeCCCeEEEEeCccccCCCcceeeecccc--
Q 011216 250 CIYVYDLEANKLSLRILA--HTS----DVNTVCFGD--ESG---HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-- 316 (491)
Q Consensus 250 ~i~vwd~~~~~~~~~~~~--~~~----~v~~i~~~~--~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~-- 316 (491)
.|..+|..+++.+-.+.. |.. .+....+.. .++ ..++.++.+|.+.++|.. +++.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~----tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRE----NGNLIVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETT----TCCEEEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECC----CCCEEeeecccCCc
Confidence 699999999998766652 211 111222211 245 367788999999999987 555544332110
Q ss_pred -----------ccE--------------------------EEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcc
Q 011216 317 -----------EGI--------------------------TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 359 (491)
Q Consensus 317 -----------~~i--------------------------~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 359 (491)
.++ ..++++|+..++++...+....++..............
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g-- 426 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVG-- 426 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC--
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccc--
Confidence 111 23577888888887766544444433221000000000
Q ss_pred cceeeceeecCC------CCcccc--cCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCcc
Q 011216 360 SYEWDYRWMDYP------PQARDL--KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 431 (491)
Q Consensus 360 ~~~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~ 431 (491)
........+ ...... ....++.+-.+..... .+...+...+..+++++.||.|+.+|..+|+
T Consensus 427 ---~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-------~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 427 ---ATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-------AWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp ---EEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-------CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ---ccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-------ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 000000000 000000 0001122222211100 0111122246678889999999999999999
Q ss_pred EEEEecCCCCC-eeeeEecCCCCeEEE
Q 011216 432 QVAALKYHTSP-VRDCSWHPSQPMLVS 457 (491)
Q Consensus 432 ~~~~~~~h~~~-v~~~~~s~~~~~l~s 457 (491)
.+..++..... -.-+.+..+|+.++.
T Consensus 497 ~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 497 ELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 99888743321 122445577774443
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.78 E-value=1.1e-05 Score=72.97 Aligned_cols=228 Identities=7% Similarity=-0.027 Sum_probs=133.0
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC--
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-- 248 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-- 248 (491)
....++|+++++++++-..++.|..||..+.. ....... ..+..+++.++|+++++....
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~~-----------------~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATVE-----------------GKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEECS-----------------SEEEEEEECTTSCEEEEEECTTS
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeCC-----------------CCceeEEEcCCCcEEEEeccCCc
Confidence 46789999999866666578899999876532 2111110 157889999999965554332
Q ss_pred CeEEEEECCCCeeeEEEe-ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc-cee---------eeccccc
Q 011216 249 DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAG---------VLMGHLE 317 (491)
Q Consensus 249 g~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~---------~~~~~~~ 317 (491)
..|..+|..+++...... ........++.. +++..+++-..++.|.++|.. ... .+. .......
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVV----QPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETT----TTEEEEEEECGGGSCSSTTCCSC
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCC----CCcEeEEEECCccccccccCCCC
Confidence 247777877776543222 122234555553 445455555568888888864 211 110 0001112
Q ss_pred cEEEEEEcCCCCEEEEe-eCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee
Q 011216 318 GITFIDSRGDGRYLISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 396 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
....| +|+++.|+++ ...+.|..+++........ ...+..+
T Consensus 170 ~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~----------------------------~~~~~~~-------- 211 (306)
T 2p4o_A 170 AANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE----------------------------PEIFVEQ-------- 211 (306)
T ss_dssp SEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC----------------------------CEEEEES--------
T ss_pred cCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc----------------------------cEEEecc--------
Confidence 34455 7788766544 4567899999864100000 0001100
Q ss_pred eEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEE--EEecCCCCCeeeeEec---CCCCeEEEEECCC
Q 011216 397 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALKYHTSPVRDCSWH---PSQPMLVSSSWDG 462 (491)
Q Consensus 397 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~s---~~~~~l~s~~~Dg 462 (491)
.....++++++|++.++....+.|.++|.. ++.. ..+.......++++|. |++..|+.++..+
T Consensus 212 --~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 212 --TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp --CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred --CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 001223567789877776677899999975 6653 3344334568999998 8988777666543
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.78 E-value=1.3e-05 Score=72.46 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=117.3
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-C-eEEEEECCCCc
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P-IVHIVDVGSGT 202 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-g-~i~iwd~~~~~ 202 (491)
.....++|+++|+++++-..++.|..||..... ....... ..+..+++.++++++++.... + .|..++..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~~~~---~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVE---GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECS---SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEEeCC---CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 456789999999977777688999999987642 2222222 368899999999965554332 2 47677777776
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee-eEEEe---------ccCCCe
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL---------AHTSDV 272 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~---------~~~~~v 272 (491)
.......... . ....++..+++..+++-..++.|+++|...++. +.... ..-...
T Consensus 107 ~~~~~~~~~~------------~---~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 107 VETLLTLPDA------------I---FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp EEEEEECTTC------------S---CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred EEEEEeCCCc------------c---ccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 5433221100 0 123344455554444444588999999876532 11110 111234
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 273 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
+.+ ++..+.++++-...+.|..+++.... .......+. .......++++++|+++++....+.|.++|..
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g-~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTD-KPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTS-CBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCC-CCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 556 53333455555667899999986210 000111111 11234568899999887777777889999864
No 258
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.78 E-value=1.9e-06 Score=73.87 Aligned_cols=182 Identities=13% Similarity=0.126 Sum_probs=118.4
Q ss_pred EEEEEEcCCCCEEEEEecCC--eEEEEECCCCeeeEEEeccCCC-eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC
Q 011216 230 IFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 230 v~~i~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
...+.|+ ++.++.+.+.+| .|+++|+.+++.+.++.-.... --.+++. ++++....-.++.+.+||.. +.
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~----t~ 117 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR----NL 117 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----TC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECc----cC
Confidence 5678888 676666777666 8999999999998887543322 2335553 34555555568999999997 66
Q ss_pred cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeE
Q 011216 307 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 386 (491)
Q Consensus 307 ~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
+.+..+.....+ ..+ .++++.|+.+..++.|.++|..+.+. +.
T Consensus 118 ~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v----------------------------------~~ 160 (262)
T 3nol_A 118 RQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPESLTP----------------------------------VR 160 (262)
T ss_dssp CEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTTCSE----------------------------------EE
T ss_pred cEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCCCeE----------------------------------EE
Confidence 777666543322 233 35677777776678899999987432 22
Q ss_pred EEccc---ceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC------------CCCeeeeEecCC
Q 011216 387 TYKGH---SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH------------TSPVRDCSWHPS 451 (491)
Q Consensus 387 ~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h------------~~~v~~~~~s~~ 451 (491)
.+.-. .....+.... +. +|++.+....+..|.+.|..+++.+..+... ..-.+.+||+|+
T Consensus 161 ~I~V~~~g~~~~~lNELe----~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 161 TITVTAHGEELPELNELE----WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp EEECEETTEECCCEEEEE----EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred EEEeccCCccccccceeE----EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence 22211 1111111111 11 5765655556889999999999998887632 124588999999
Q ss_pred CCeEEEEEC
Q 011216 452 QPMLVSSSW 460 (491)
Q Consensus 452 ~~~l~s~~~ 460 (491)
++.|..++.
T Consensus 236 ~~~lfVTGK 244 (262)
T 3nol_A 236 HHRLFVTGK 244 (262)
T ss_dssp TTEEEEEET
T ss_pred CCEEEEECC
Confidence 887766664
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.75 E-value=1.9e-06 Score=73.82 Aligned_cols=179 Identities=11% Similarity=0.052 Sum_probs=118.6
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe--EEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc
Q 011216 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 230 v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 307 (491)
...+.|+ ++.++++.+.+|.|+++|+++++.+..+ - .... ..+++ .++++....-.++.+.+||.. +.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~----Tl~ 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGM----PPQ 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEE--CSSCEEEEESSSCEEEEEETT----TTE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEE--eCCEEEEEEccCCEEEEEECC----cCc
Confidence 4567787 4566777778889999999999988877 2 2333 34665 355676677788999999997 667
Q ss_pred ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEE
Q 011216 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 308 ~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
.+..+.....+ ..++ ++++.|+.+..++.|.++|..+.+. +..
T Consensus 128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v----------------------------------~~~ 170 (268)
T 3nok_A 128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFAL----------------------------------VGA 170 (268)
T ss_dssp EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCE----------------------------------EEE
T ss_pred EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeE----------------------------------EEE
Confidence 77666543322 3344 4677887777788999999888432 222
Q ss_pred Ecccc---eeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC-------------CCCeeeeEecCC
Q 011216 388 YKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPS 451 (491)
Q Consensus 388 ~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~s~~ 451 (491)
+.-.. ....+.... |. +|++.+....+..|.+.|..+++.+..+... ..-.+.|||+|+
T Consensus 171 I~V~~~g~~v~~lNeLe----~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 171 VQVKLRGQPVELINELE----CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EECEETTEECCCEEEEE----EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEeCCCCcccccccccE----Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 22111 111111111 11 6765555556889999999999998877521 135688999998
Q ss_pred CCeEEEEE
Q 011216 452 QPMLVSSS 459 (491)
Q Consensus 452 ~~~l~s~~ 459 (491)
++.|..++
T Consensus 246 ~~rlfVTG 253 (268)
T 3nok_A 246 SGRIFMTG 253 (268)
T ss_dssp TCCEEEEE
T ss_pred CCEEEEeC
Confidence 77555554
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.72 E-value=2e-06 Score=87.87 Aligned_cols=196 Identities=14% Similarity=0.088 Sum_probs=114.6
Q ss_pred ceEEEEEc-CCCCEEEEEEC-C----CeEEEEECCCC-eEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-----CeE
Q 011216 126 RAYVSQFS-ADGSLFVAGFQ-A----SQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIV 193 (491)
Q Consensus 126 ~v~~~~~s-~dg~~l~~~~~-d----g~i~vw~~~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-----g~i 193 (491)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+.. ........++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVSGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEEEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----cccCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 68889999 99999886543 2 35999999987 52211 111223468899999988888765 268
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec---CCeEEEEECCCCe-ee--EEEe-
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANK-LS--LRIL- 266 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~---dg~i~vwd~~~~~-~~--~~~~- 266 (491)
.++++.++............ ......+.|+|||++|+..+. ...|+++|+.++. .. ..+.
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~-------------~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHN-------------PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp EEEETTSCGGGCEEEEECCC-------------TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC
T ss_pred EEEECCCCchhcEEEEecCC-------------CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec
Confidence 88888776532111111000 013457899999998887663 3468999998752 12 3332
Q ss_pred ccCCCeEEEEEecCCCCEEEEEeCC--C--eEEEEeCccccCCCcceee-eccccc--cEEEEEEcCCCCEEEEeeCCCc
Q 011216 267 AHTSDVNTVCFGDESGHLIYSGSDD--N--LCKVWDRRCLNVKGKPAGV-LMGHLE--GITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 267 ~~~~~v~~i~~~~~~~~~l~s~s~d--g--~i~iwd~~~~~~~~~~~~~-~~~~~~--~i~~i~~sp~~~~l~~~~~dg~ 339 (491)
.......++.|+ .++.+++....+ + .|..+|+. ....... +..+.. .+..+.+. .+.++++...++.
T Consensus 317 ~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~----~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~ 390 (751)
T 2xe4_A 317 REKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRG----QPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGL 390 (751)
T ss_dssp CCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETT----STTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTE
T ss_pred CCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCC----CcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCE
Confidence 344555666664 445455555443 3 56666654 1111122 222333 34555554 2344555666675
Q ss_pred --EEEeeC
Q 011216 340 --IKLWDI 345 (491)
Q Consensus 340 --i~iwd~ 345 (491)
|.++|+
T Consensus 391 ~~l~~~dl 398 (751)
T 2xe4_A 391 TRIWTMMA 398 (751)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 555565
No 261
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=3e-05 Score=76.38 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=113.8
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCcee------EEEeEeCCCCceEEEEecCCeEEEEECCCCcccccccee
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT------VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~------v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 210 (491)
..|++++.++.|.-+|..+|+.+-+.......... -..+++ .+..+++++.++.|.-+|..+|+........
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44555656445899999998766554332211100 011122 3556788889999999999999886554332
Q ss_pred ccccccccccCCCCCceecEEEEEEcCCCC-EEEEEec------CCeEEEEECCCCeeeEEEeccCCCe-----------
Q 011216 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSS------DDCIYVYDLEANKLSLRILAHTSDV----------- 272 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~-~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~v----------- 272 (491)
........ ...++.. .=..+++ .+++++. ++.|+-+|..+++.+-........+
T Consensus 147 ~~~~~~~~-------~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~ 218 (582)
T 1flg_A 147 DHGAGYTM-------TGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVT 218 (582)
T ss_dssp CGGGTCBC-------CSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEES
T ss_pred CCCcCccc-------ccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccc
Confidence 21100000 0012110 0001233 5666543 7899999999998765543211000
Q ss_pred ------------------------------EEEEEecCCCCEEEEEeC--------------------C----CeEEEEe
Q 011216 273 ------------------------------NTVCFGDESGHLIYSGSD--------------------D----NLCKVWD 298 (491)
Q Consensus 273 ------------------------------~~i~~~~~~~~~l~s~s~--------------------d----g~i~iwd 298 (491)
..+++. +...+++.+.. | +.|..+|
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d-~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD 297 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD-AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVD 297 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEE-TTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEEC
T ss_pred cccccccCCCccccccccccccccCCccccCCceEc-CCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEe
Confidence 124454 44566666653 2 5788999
Q ss_pred CccccCCCcceeeecc--cc--------ccEEEEEEc-CCCC---EEEEeeCCCcEEEeeCCCCCCcccc
Q 011216 299 RRCLNVKGKPAGVLMG--HL--------EGITFIDSR-GDGR---YLISNGKDQAIKLWDIRKMSSNASC 354 (491)
Q Consensus 299 ~~~~~~~~~~~~~~~~--~~--------~~i~~i~~s-p~~~---~l~~~~~dg~i~iwd~~~~~~~~~~ 354 (491)
.. +++.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++.....
T Consensus 298 ~~----TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 362 (582)
T 1flg_A 298 PS----SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF 362 (582)
T ss_dssp TT----TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CC----CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence 87 6666665532 21 2222 2222 4674 7788999999999999987655443
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=7.2e-06 Score=69.72 Aligned_cols=183 Identities=15% Similarity=0.081 Sum_probs=120.8
Q ss_pred CceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 125 SRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
.-...+.|++ +.+..+.+.+ +.|+++|+.+++.+.........- -..+++. .++.....-.++.+.++|..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--geGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--GAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--eeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 4455889986 5556666654 489999999997777654332211 1223332 23444444568899999999988
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC-----CCeEEEEE
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCF 277 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~ 277 (491)
.+..+.... .-..+ .++++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.+
T Consensus 97 ~~~ti~~~~-----------------~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 97 PRARFRYPG-----------------EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEEEEECSS-----------------CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEEeCCC-----------------CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 766554321 11233 3567777777778999999999998887775321 35677887
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecc-------------ccccEEEEEEcCCCCEEEEeeC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-------------HLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
. ++.+++..-.+..|.+.|.. +++.+..+.. ...-.+.|+++|+++.|++.+.
T Consensus 158 ~--~G~lyanvw~s~~I~vIDp~----tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 158 V--NGELLANVWLTSRIARIDPA----SGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp E--TTEEEEEETTTTEEEEECTT----TCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred e--CCEEEEEECCCCeEEEEECC----CCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5 56666666567899999987 6665554431 1235689999998877776654
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=4e-05 Score=78.98 Aligned_cols=293 Identities=10% Similarity=0.037 Sum_probs=164.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-------e----ccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI-------L----AKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~-------~----~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
...|+++...++|. |..|+..+-|.+++..++....... . ..-....|.++...++|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 46799999998886 5556664568889987753221111 0 011234689999988886 556776777
Q ss_pred EEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEE---eccC
Q 011216 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHT 269 (491)
Q Consensus 193 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~ 269 (491)
|..++..++.............. ..-....|.++...++|. |.+|+.++-|..||..++...... ....
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNE-------SSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCS-------SCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred EEEeCCCCCcceeeccCcccccc-------CCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence 88888776554322111000000 000123689999888886 666776666999998765432211 1234
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec---cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
..|.++... .++++ ..|+.++-+..+|.. .++ ...+. .....|.++...+++.+.+ |+. +-|..||..
T Consensus 407 ~~v~~i~~d-~~g~l-Wigt~~~Gl~~~~~~----~~~-~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~ 477 (781)
T 3v9f_A 407 NSVLCSLKD-SEGNL-WFGTYLGNISYYNTR----LKK-FQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLA 477 (781)
T ss_dssp SBEEEEEEC-TTSCE-EEEETTEEEEEECSS----SCE-EEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESS
T ss_pred cceEEEEEC-CCCCE-EEEeccCCEEEEcCC----CCc-EEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCC
Confidence 568888874 55654 457776778888875 222 22221 1345788998888876444 555 458889876
Q ss_pred CCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEE
Q 011216 347 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 426 (491)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd 426 (491)
+...... ........... .+.++...++|.+. .|+.++.|..||
T Consensus 478 ~~~~~~~--------------------------------~~~~~~~~~~~---~i~~i~~d~~g~lW-igt~~~Gl~~~~ 521 (781)
T 3v9f_A 478 SKKVIHH--------------------------------YDTSNSQLLEN---FVRSIAQDSEGRFW-IGTFGGGVGIYT 521 (781)
T ss_dssp SSSCCEE--------------------------------ECTTTSSCSCS---CEEEEEECTTCCEE-EEESSSCEEEEC
T ss_pred CCeEEec--------------------------------ccCcccccccc---eeEEEEEcCCCCEE-EEEcCCCEEEEe
Confidence 5321100 00000000000 01122334466644 455544488899
Q ss_pred CCCccEEEEecC---CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 427 LVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 427 ~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
..+++...-... ....|.++...++|.+.+++ .+|.|..|+...+
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF 569 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred CCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence 876654322111 23568899998888866554 4776588887654
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=3e-05 Score=76.41 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=94.6
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEeeccCC-ceeEE-EeEeCC---CCc-eEEEEe------cCCeEEEEECCCCcc
Q 011216 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSL-RWTVT-DTSLSP---DQR-HLVYAS------MSPIVHIVDVGSGTM 203 (491)
Q Consensus 136 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~v~-~l~~sp---~~~-~l~~~~------~dg~i~iwd~~~~~~ 203 (491)
+..|+.++.|+.|.-+|..+|+.+-+....... ...+. ...... +++ .+++++ .++.|.-+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 457888889999999999999766554322110 00111 001111 233 555554 378999999999987
Q ss_pred ccccceeccc--------------cccc-cccC-----------CCCCceecEEEEEEcCCCCEEEEEec----------
Q 011216 204 ESLANVTEIH--------------DGLD-FSAA-----------DDGGYSFGIFSLKFSTDGRELVAGSS---------- 247 (491)
Q Consensus 204 ~~~~~~~~~~--------------~~~~-~~~~-----------~~~~h~~~v~~i~~s~~~~~l~~~~~---------- 247 (491)
.......... .+.. +... ...+.. .-..+++.|+...++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~-~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGA-PWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCC-CCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCcc-ccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 6543221100 0000 0000 000000 1124577777777776653
Q ss_pred ----------C----CeEEEEECCCCeeeEEEec--cCC----CeEEEEEec---CCC---CEEEEEeCCCeEEEEeCcc
Q 011216 248 ----------D----DCIYVYDLEANKLSLRILA--HTS----DVNTVCFGD---ESG---HLIYSGSDDNLCKVWDRRC 301 (491)
Q Consensus 248 ----------d----g~i~vwd~~~~~~~~~~~~--~~~----~v~~i~~~~---~~~---~~l~s~s~dg~i~iwd~~~ 301 (491)
| +.|..+|..+++.+-.+.. |.. .+....+.. .++ ..++.++.+|.++++|..
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~- 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRS- 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETT-
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECC-
Confidence 2 5899999999998876642 321 111111111 345 378889999999999987
Q ss_pred ccCCCccee
Q 011216 302 LNVKGKPAG 310 (491)
Q Consensus 302 ~~~~~~~~~ 310 (491)
+++.+.
T Consensus 355 ---tG~~lw 360 (582)
T 1flg_A 355 ---NGKLQN 360 (582)
T ss_dssp ---TCCEEE
T ss_pred ---CCCEec
Confidence 555443
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=7.5e-05 Score=76.97 Aligned_cols=291 Identities=12% Similarity=0.052 Sum_probs=162.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec----cCCceeEEEeEeCCCCceEEEEecCCeEEEEECC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA----KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~ 199 (491)
...|.++...++|.+.+ |+.+ -|.+||..++......... .-....|.++...++|.+ ..|+..+-|.+++..
T Consensus 210 ~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKL-WIATELNGIMILDLQ 286 (781)
T ss_dssp CSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEE-EEEESSSCEEEEETT
T ss_pred CCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCE-EEEeCCCCeEEECCC
Confidence 35799999999987655 4455 6899998776322211110 012346999999888874 456664568889987
Q ss_pred CCccccccc--eeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe---------cc
Q 011216 200 SGTMESLAN--VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---------AH 268 (491)
Q Consensus 200 ~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~~ 268 (491)
++....... ...... ......-....|.++...++|. |.+|+.++-|..++........... ..
T Consensus 287 ~~~~~~~~~~~f~~~~~----~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIRE----GDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS 361 (781)
T ss_dssp CC---------CEEECB----CSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred CCeeeeeeccccccccC----CCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence 765433221 000000 0000011233699999998886 6677766679999987654322110 12
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee----ccccccEEEEEEcCCCCEEEEeeCCCcEEEee
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd 344 (491)
...|.++... .+++ |..|+.++-|..||.... . ...+ ......|.++...+++.+.+ |+.++-|..+|
T Consensus 362 ~~~v~~i~~d-~~g~-lWigt~~~Gl~~~~~~~~----~-~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 362 NKVVSSVCDD-GQGK-LWIGTDGGGINVFENGKR----V-AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp SSCEEEEEEC-TTSC-EEEEEBSSCEEEEETTEE----E-EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred CcceEEEEEc-CCCC-EEEEeCCCcEEEEECCCC----e-EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 3568888874 5555 456676667888886421 1 1111 12345688998888877544 66666788888
Q ss_pred CCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEE
Q 011216 345 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 424 (491)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 424 (491)
..+.. +..+........ .++++...+++. |..|+. +.|..
T Consensus 434 ~~~~~-----------------------------------~~~~~~~~~~~~---~v~~i~~d~~g~-lwigt~-~Gl~~ 473 (781)
T 3v9f_A 434 TRLKK-----------------------------------FQIIELEKNELL---DVRVFYEDKNKK-IWIGTH-AGVFV 473 (781)
T ss_dssp SSSCE-----------------------------------EEECCSTTTCCC---CEEEEEECTTSE-EEEEET-TEEEE
T ss_pred CCCCc-----------------------------------EEEeccCCCCCC---eEEEEEECCCCC-EEEEEC-CceEE
Confidence 76521 111110000000 011222333555 444555 55999
Q ss_pred EECCCccEEEEecCC-----CCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 425 YDLVSGEQVAALKYH-----TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 425 wd~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
||..+++........ ...|.++...++|.+.+.+..+| |..|+...
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~ 524 (781)
T 3v9f_A 474 IDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM 524 (781)
T ss_dssp EESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred EeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence 998876543322212 35789999998887655443344 77777654
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=1.2e-05 Score=68.43 Aligned_cols=183 Identities=15% Similarity=0.084 Sum_probs=117.0
Q ss_pred cEEEEEEcCCCCEEEEEecC--CeEEEEECCCCeeeEEEeccCCC-eEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC
Q 011216 229 GIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 305 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 305 (491)
-...+.|+. +.++.+.+.+ ..|+.+|+.+++.+..+.-.... --.+++. +++++...-.++.+.+||.. +
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~----t 94 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLA----T 94 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETT----T
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECC----c
Confidence 366788886 5555555554 48999999999998877533222 2345553 45566666678999999997 6
Q ss_pred CcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCee
Q 011216 306 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 306 ~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
.+.+..+.....+ ..++ ++++.|+.+..++.|.++|..+.+. +
T Consensus 95 l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~----------------------------------~ 137 (243)
T 3mbr_X 95 LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQ----------------------------------V 137 (243)
T ss_dssp TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCE----------------------------------E
T ss_pred CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeE----------------------------------E
Confidence 6777666543333 3444 4666666666688999999988432 2
Q ss_pred EEEcccc---eeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCC-------------CCCeeeeEec
Q 011216 386 ATYKGHS---VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWH 449 (491)
Q Consensus 386 ~~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~s 449 (491)
..+.-.. ....+....+. +|++.+....+..|.+.|..+|+.+..+... ..-.+.++|+
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-----~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d 212 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-----NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD 212 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-----TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred EEEEEccCCcccccceeeEEe-----CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence 2222111 11111111111 5776655556789999999999998877521 1245789999
Q ss_pred CCCCeEEEEEC
Q 011216 450 PSQPMLVSSSW 460 (491)
Q Consensus 450 ~~~~~l~s~~~ 460 (491)
|+++.|..++.
T Consensus 213 ~~~~~lfVTGK 223 (243)
T 3mbr_X 213 AEHDRLFVTGK 223 (243)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEECC
Confidence 98876666553
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=3.9e-06 Score=71.98 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=121.1
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEE-EecCCeEEEEECCCCcccc
Q 011216 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 127 v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~-~~~dg~i~iwd~~~~~~~~ 205 (491)
...+.|+ ++.+..+.+.+|.|+++|+.+++.+... .. ... --..+++ +++.|.. .-.++.+.++|.++.+.+.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~-FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNI-FAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTC-CEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCc-ceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEE
Confidence 3578887 4566777778889999999999777666 32 221 1123444 3444444 4468899999999988766
Q ss_pred ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC-----CCeEEEEEecC
Q 011216 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDE 280 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~i~~~~~ 280 (491)
.+.... .-. .+.+|++.|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|.
T Consensus 131 ti~~~~-----------------eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-- 189 (268)
T 3nok_A 131 TTRYSG-----------------EGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-- 189 (268)
T ss_dssp EEECSS-----------------CCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEeCCC-----------------cee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--
Confidence 554321 111 223567888888789999999999998887765321 245778885
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc-------------cccEEEEEEcCCCCEEEEeeC
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-------------LEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~i~~i~~sp~~~~l~~~~~ 336 (491)
++.+++....+..|.+.|.. +++.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 190 dG~lyanvw~s~~I~vIDp~----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 190 NGVIYANIWHSSDVLEIDPA----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTEEEEEETTCSEEEEECTT----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCEEEEEECCCCeEEEEeCC----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 56666666578899999987 66665554321 135689999998766665543
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.62 E-value=0.00018 Score=66.14 Aligned_cols=197 Identities=10% Similarity=0.063 Sum_probs=120.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCCc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~~ 202 (491)
.+...|.+..+++ +|+.+. ...|+..++..... .... .... .+..++|++.+..|+.+. ..+.|..+++.++.
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~-~~~~--~~~~-~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEY-TLLL--NNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCE-EEEE--CSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCee-EEee--cCCC-ceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence 3445677776644 444443 34588888876532 2222 2222 478999998766666554 56789999988765
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEE-EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 281 (491)
........ ......+++.+.+..| ++-...+.|.+.++........+...-.....+++.|.+
T Consensus 107 ~~~~~~~~----------------~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~ 170 (349)
T 3v64_C 107 VEEVVSTG----------------LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 170 (349)
T ss_dssp CEEEECSS----------------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred ceEEEeCC----------------CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence 33221100 0134578888755545 444556889999987654333333344567899998556
Q ss_pred CCEEEEEeCC-CeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCC
Q 011216 282 GHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 282 ~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~ 347 (491)
+.++++-... +.|..+++. +.....+ .........|+++|++..|..+ ...+.|..+|+..
T Consensus 171 g~ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 171 GTIYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TEEEEEECSSSCEEEEEETT-----SCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CeEEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 6666665555 788888874 2222222 2223456899999876666554 4556788898764
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.61 E-value=2.5e-05 Score=79.81 Aligned_cols=155 Identities=9% Similarity=0.005 Sum_probs=93.1
Q ss_pred eEEEeEeC-CCCceEEEEecC-C----eEEEEECCCC-ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE
Q 011216 171 TVTDTSLS-PDQRHLVYASMS-P----IVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (491)
Q Consensus 171 ~v~~l~~s-p~~~~l~~~~~d-g----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~ 243 (491)
.+...+|| |||++|+.+... | +|+++|+.++ +.... .+. .....++|+|||+.|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~-----------------~~~~~~~WspDg~~l~ 236 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS-----------------GTNGEIVWGPDHTSLF 236 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE-----------------EECSCCEECSSTTEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc-----------------CceeeEEEecCCCEEE
Confidence 67889999 999998876542 2 5999999988 53110 010 0234679999999888
Q ss_pred EEecC-----CeEEEEECCCCeee--EEEe-ccCCCeEEEEEecCCCCEEEEEeC---CCeEEEEeCccccCCCcc--ee
Q 011216 244 AGSSD-----DCIYVYDLEANKLS--LRIL-AHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKP--AG 310 (491)
Q Consensus 244 ~~~~d-----g~i~vwd~~~~~~~--~~~~-~~~~~v~~i~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~--~~ 310 (491)
....+ ..|+++++.++... ..+. ........+.|+ +++++|+..+. ...|.++|+.... ... ..
T Consensus 237 y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~--~~~~~~~ 313 (751)
T 2xe4_A 237 YVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGN--AHNTLEI 313 (751)
T ss_dssp EEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCT--TCCCEEE
T ss_pred EEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCC--CCceeEE
Confidence 87765 36888999876422 2222 233456788998 77877766552 3467888886221 122 22
Q ss_pred eeccccccEEEEEEcCCCCEEEEeeCC----CcEEEeeCC
Q 011216 311 VLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWDIR 346 (491)
Q Consensus 311 ~~~~~~~~i~~i~~sp~~~~l~~~~~d----g~i~iwd~~ 346 (491)
..........++.|+.++.+++....+ ..|..+|+.
T Consensus 314 l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 314 VRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp SSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred eecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 222334455666655444444444333 246666654
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.58 E-value=2.7e-06 Score=85.70 Aligned_cols=113 Identities=13% Similarity=0.188 Sum_probs=73.9
Q ss_pred EeEeCC-CCceEEEEecCC-----------eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCE
Q 011216 174 DTSLSP-DQRHLVYASMSP-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (491)
Q Consensus 174 ~l~~sp-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~ 241 (491)
.+++.| +++.++.|+.+. .+.+||..+++........... .....++++..+++.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-------------~~~~~~~~~~~~g~l 256 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-------------DMFCPGISMDGNGQI 256 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-------------CCSSCEEEECTTSCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC-------------CCccccccCCCCCCE
Confidence 456677 888888887543 6889999988765544332211 112335677889999
Q ss_pred EEEEec-CCeEEEEECCCCeeeEEEeccCC-CeEEEEEecCCCCEEEEEe-CC-----CeEEEEeCc
Q 011216 242 LVAGSS-DDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGS-DD-----NLCKVWDRR 300 (491)
Q Consensus 242 l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~s~s-~d-----g~i~iwd~~ 300 (491)
+++|+. +..+.+||..+++....-..+.. .-.+++.. +++++++.|+ .+ ..+.+||..
T Consensus 257 yv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp EEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred EEeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 999884 45799999988765432221211 12334443 5788999988 34 468999986
No 271
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=2.1e-05 Score=74.49 Aligned_cols=154 Identities=10% Similarity=0.055 Sum_probs=95.8
Q ss_pred ceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC----C-eEEEEECC
Q 011216 126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----P-IVHIVDVG 199 (491)
Q Consensus 126 ~v~~~~~s~-dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d----g-~i~iwd~~ 199 (491)
....++++| ++..|.++...+.|+.+|+..+. +..... .......++|++++++|+++... . .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 346789998 45556666555889999998763 333222 22358899999999977766542 1 2333443
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEe-ccCCCeEEEEE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCF 277 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~i~~ 277 (491)
.+.......+... .....++++| ++.++++-..++.|+.++...+....... ........++|
T Consensus 213 ~g~~~~~~~l~~~---------------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 213 ESGFKVITELTKG---------------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp GGTSCSEEEEEEC---------------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred CCceeeeeeeccC---------------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence 2322111111100 1355788999 67766666677899999998776422222 22245789999
Q ss_pred ecCCCC-EEEEEeCCCeEEEEeCc
Q 011216 278 GDESGH-LIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 278 ~~~~~~-~l~s~s~dg~i~iwd~~ 300 (491)
+ ++++ ++++-...+.|..++..
T Consensus 278 ~-pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 278 H-PSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp C-TTSSEEEEEETTTTEEEEEEEE
T ss_pred c-CCCCEEEEEECCCCEEEEEeCC
Confidence 8 7777 55555677889998865
No 272
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.57 E-value=0.00042 Score=62.99 Aligned_cols=279 Identities=11% Similarity=0.093 Sum_probs=143.9
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeec-cCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~ 202 (491)
...+.++.|.+++..+++ +..|.| +...+.++........ ......+.++.|.+ +..+ .++..+.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~-~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGW-IVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEE-EEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEE-EEECCCeEEE-ECCCCC
Confidence 357999999988887775 467765 3344444322322111 12234688899976 4444 4455665443 333343
Q ss_pred cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCee-eEEEeccCCCeEEEEEecCC
Q 011216 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDES 281 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~~~~ 281 (491)
.-....... .+...+..+.+.+++..++++ .+|.|+. ..+.++. ..........+..+.+. ++
T Consensus 110 tW~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~-~~ 173 (327)
T 2xbg_A 110 SWSQIPLDP-------------KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS-PS 173 (327)
T ss_dssp SCEECCCCT-------------TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC-TT
T ss_pred CceECcccc-------------CCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEc-CC
Confidence 211111100 011145677777777655554 4564432 2222332 22223455678899997 56
Q ss_pred CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccc
Q 011216 282 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 361 (491)
Q Consensus 282 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 361 (491)
+.+++.+...+..+-+|-. ......+. ......+..+.+.++++.++ .+.+|.+.+.+.....
T Consensus 174 ~~~~~~g~~G~~~~S~d~g--G~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~------------ 236 (327)
T 2xbg_A 174 GEYVAVSSRGSFYSTWEPG--QTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSE------------ 236 (327)
T ss_dssp SCEEEEETTSSEEEEECTT--CSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEE------------
T ss_pred CcEEEEECCCcEEEEeCCC--CCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCC------------
Confidence 7777666554444444420 01222221 23446788899999887655 4467777766321100
Q ss_pred eeeceeecCCCCcccccCCCCCeeEEEccc--ceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEec--
Q 011216 362 EWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 437 (491)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-- 437 (491)
.|. .+... .....+ +.+.+.+++.+++++. +|.| ++....|+.-..+.
T Consensus 237 tW~----------------------~~~~~~~~~~~~~----~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~ 288 (327)
T 2xbg_A 237 NWG----------------------ELLSPLRRNSVGF----LDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDV 288 (327)
T ss_dssp EEC----------------------CCBCTTSSCCSCE----EEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGG
T ss_pred eeE----------------------eccCCcccCCcce----EEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCcc
Confidence 000 00000 000011 1223444666666654 6666 44445555444443
Q ss_pred -CCCCCeeeeEecCCCCeEEEEECCCcEEEecC
Q 011216 438 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 469 (491)
Q Consensus 438 -~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~ 469 (491)
.....+.++.|.+++ .++.++.+|.|..++-
T Consensus 289 ~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 289 KKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 234567889997555 4666778998877664
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=1.4e-05 Score=75.71 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=97.1
Q ss_pred eEEEeEeCC-CCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-
Q 011216 171 TVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD- 248 (491)
Q Consensus 171 ~v~~l~~sp-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d- 248 (491)
....++++| ++..|.++...+.|+.+|+.++....+... ......++|+++++.|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----------------~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----------------LSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----------------CSCEEEEEECTTSSEEEEEECCS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----------------CCCcceEEEeCCCCEEEEEeCCC
Confidence 457889998 466677766658899999887665433220 0157889999999966666542
Q ss_pred C----eEEEEECCCCeee--EEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-cccccEEE
Q 011216 249 D----CIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITF 321 (491)
Q Consensus 249 g----~i~vwd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~i~~ 321 (491)
+ .+.+++.. +... ..+. .......+++.|.++.++++-..++.|..++.. ......... +.......
T Consensus 201 ~~~~~~v~~~~~~-g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~----~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 201 NNDRPNNYILTRE-SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT----TQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp CTTSEEEEEEEGG-GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT----TTEEEEEEECSSSSCCEE
T ss_pred CcccceEEEEeCC-Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC----CCcEEEEEEcCCCCccee
Confidence 1 34444433 2221 2222 234467788874478877777788899999985 222211111 11234678
Q ss_pred EEEcCCCCEEE-EeeCCCcEEEeeCCC
Q 011216 322 IDSRGDGRYLI-SNGKDQAIKLWDIRK 347 (491)
Q Consensus 322 i~~sp~~~~l~-~~~~dg~i~iwd~~~ 347 (491)
++|+|+|++|+ +-...+.|..++...
T Consensus 275 ia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99999999554 445667888887653
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.48 E-value=0.00067 Score=61.30 Aligned_cols=184 Identities=10% Similarity=0.022 Sum_probs=109.3
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCC----ccccccceecc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEI 212 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~ 212 (491)
+|+.+.. ..|+..++.+...... . .. ...+..++|++.+..|+.+. ..+.|..+++.+. ...... ..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~-~--~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~~- 74 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSL-I--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SR- 74 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEE-E--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CS-
T ss_pred EEEEECC-CeEEEEECCCcceEeh-h--cC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--eC-
Confidence 3444433 4688899887643322 1 11 22578899998766566554 4589999998762 111110 00
Q ss_pred ccccccccCCCCCceecEEEEEEcCCCCEEE-EEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCC
Q 011216 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 213 ~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d 291 (491)
+ -.....+++.+.+..|+ +-...+.|.++++........+.........+++.|.++.++++....
T Consensus 75 --~-----------~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~ 141 (316)
T 1ijq_A 75 --D-----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 141 (316)
T ss_dssp --S-----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred --C-----------CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC
Confidence 0 01346788887555454 445678999999876543333333345678999974455555554433
Q ss_pred -CeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCC
Q 011216 292 -NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 292 -g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~ 347 (491)
+.|...++. +.....+ .........|+++|++..|..+ ...+.|..+|+..
T Consensus 142 ~~~I~~~~~d-----G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 142 PAKIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SCEEEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCeEEEEcCC-----CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 688888874 3333322 2233467899999877666554 4556899999864
No 275
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.48 E-value=0.00038 Score=61.12 Aligned_cols=267 Identities=10% Similarity=0.138 Sum_probs=162.6
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCC
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
+..|.|.|+.++....+... .. -+.-.+|..+.|+.-. ..++.|+|+++.+......+.+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi--~A----dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e------------- 107 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI--SA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 107 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC--CC----SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCEEEEEECCCCCCcccccc--cc----ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-------------
Confidence 34789999988644322211 11 1234589888877765 6799999999987766655443
Q ss_pred CceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEecc----CCCeEEEEEecCCCCEEEEEeC-------CC
Q 011216 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH----TSDVNTVCFGDESGHLIYSGSD-------DN 292 (491)
Q Consensus 225 ~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~s~-------dg 292 (491)
.|.-=.|-.+. .|+..+ +..|+-|++... .+.+.+..| ...|.....+ ++.++++..+- .|
T Consensus 108 ----~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G 180 (365)
T 2xzh_A 108 ----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 180 (365)
T ss_dssp ----CEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEEC-TTSCEEEEEEEEEETTEEEE
T ss_pred ----ccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEEC-CCCCEEEEEeEeccCCccce
Confidence 56666777554 455544 456999999753 444455443 2456666665 66777665442 36
Q ss_pred eEEEEeCccccCCCcceeeeccccccEEEEEEcCC---CCEEEEeeC---CCcEEEeeCCCCC-CccccccCcccceeec
Q 011216 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGK---DQAIKLWDIRKMS-SNASCNLGFRSYEWDY 365 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~---~~~l~~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 365 (491)
.+.+|.. ..+..+.+.+|......+....+ .++++.+.. .+.++|.++.... ....+ ....
T Consensus 181 ~mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f-------~kk~ 248 (365)
T 2xzh_A 181 AMQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKA 248 (365)
T ss_dssp EEEEEET-----TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC-------CCEE
T ss_pred eEEEEee-----cccccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc-------cccc
Confidence 7889997 45666778888765544444322 123333332 2578898885431 11000 0000
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeee
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
..+.++|+ ...+...++..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus 249 vdi~fppe----------------------a~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ 306 (365)
T 2xzh_A 249 VDVFFPPE----------------------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 306 (365)
T ss_dssp EEECCCTT----------------------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred ceeeCCcc----------------------ccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEE
Confidence 00111111 00111122234556678888999999999999999999888777777776
Q ss_pred eEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 446 CSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 446 ~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.+-+....-++.....|.|.--.++..
T Consensus 307 ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 307 TAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred ecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 666655556666678888877666554
No 276
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.46 E-value=0.00025 Score=66.09 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=116.8
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCCccc
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTME 204 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~ 204 (491)
.-.|.+..+++ +|+.+. ...|+..++..... .... .... .+..++|.+.+..|+.+. ..+.|..+++..+...
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~-~~~~--~~~~-~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEY-TLLL--NNLE-NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCC-EEEE--CSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcE-EEEe--cCCC-ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE
Confidence 34466666643 444443 35688888876532 2221 2222 478999998666565554 5678999998876533
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEE-EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCC
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 283 (491)
.+.... + .....+++.+.+..| ++-...+.|.+.++........+.........+++.|.++.
T Consensus 152 ~~~~~~-----~-----------~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ 215 (386)
T 3v65_B 152 EVVSTG-----L-----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT 215 (386)
T ss_dssp EEECSS-----C-----------SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred EEEeCC-----C-----------CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence 221100 0 034567888755545 44455678999888755433333333456789999855555
Q ss_pred EEEEEeCC-CeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCC
Q 011216 284 LIYSGSDD-NLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 284 ~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~ 347 (491)
++++-... +.|..+++. +.....+ .........|+++|++..|..+ ...+.|..+|+..
T Consensus 216 ly~td~~~~~~I~r~~~d-----G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 216 IYWTDWGNTPRIEASSMD-----GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEECSSSCEEEEEETT-----SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EEEeccCCCCEEEEEeCC-----CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 55555555 788888874 2222222 2233456889999876655544 4566788888764
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.45 E-value=9.8e-05 Score=69.91 Aligned_cols=155 Identities=13% Similarity=0.157 Sum_probs=92.8
Q ss_pred eEEEeEeCCC--CceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC
Q 011216 171 TVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (491)
Q Consensus 171 ~v~~l~~sp~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d 248 (491)
....++|+|+ +..|+++...+.|+.++..++......... .....++++++|+ |+++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~-----------------~~P~giavd~dG~-lyVad~~ 201 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNI-----------------GQCADVNFTLNGD-MVVVDDQ 201 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCC-----------------SCEEEEEECTTCC-EEEEECC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCC-----------------CCccEEEECCCCC-EEEEcCC
Confidence 4668999995 445555554488999999877664443210 1578999999999 5554432
Q ss_pred C-----eEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-c-cccccEEE
Q 011216 249 D-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-M-GHLEGITF 321 (491)
Q Consensus 249 g-----~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~-~~~~~i~~ 321 (491)
+ .+...+...+.........-.....+++.|.+++++++-..++.|+.+|.. .+.....+ . +....-..
T Consensus 202 ~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~----~g~~~~~~~~~~~~~~~~~ 277 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA----TGTLTEEEVMMDTKGSNFH 277 (433)
T ss_dssp SCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTT----TCCEEEEEEECSCCSSCEE
T ss_pred CCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC----CCeEEEEEeccCCCCCccc
Confidence 1 233344322211111112234456788874477777777778889999875 33331121 1 11122346
Q ss_pred EEEcCCCCEEEE-eeCCCcEEEeeCCC
Q 011216 322 IDSRGDGRYLIS-NGKDQAIKLWDIRK 347 (491)
Q Consensus 322 i~~sp~~~~l~~-~~~dg~i~iwd~~~ 347 (491)
++++|++++|+. -...+.|..+++..
T Consensus 278 ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 278 IVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 999999995554 44567899887653
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.45 E-value=0.00042 Score=63.58 Aligned_cols=199 Identities=9% Similarity=-0.033 Sum_probs=116.8
Q ss_pred cEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc
Q 011216 229 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 307 (491)
.+..++|++....|+.. ...+.|+.+++........+.........+++.+.+++++++-...+.|.+.++. ...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d----G~~ 149 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAH 149 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT----SCS
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC----CCc
Confidence 47889999766555555 4578899999987654333333334567888874566666777777899999985 222
Q ss_pred ceeeeccccccEEEEEEcCCCCEEEEe-eCC-CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCee
Q 011216 308 PAGVLMGHLEGITFIDSRGDGRYLISN-GKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 385 (491)
Q Consensus 308 ~~~~~~~~~~~i~~i~~sp~~~~l~~~-~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (491)
....+.........++++|.+..|+.. ... +.|..+++.... .
T Consensus 150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-----------------------------------~ 194 (349)
T 3v64_C 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----------------------------------R 194 (349)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----------------------------------C
T ss_pred eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-----------------------------------c
Confidence 222222334567899999866555544 344 678888776421 1
Q ss_pred EEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcE
Q 011216 386 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 464 (491)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i 464 (491)
..+.. ..... ...++++|++..|+.+. ..+.|..+|+........+.........+++. .+.++++-...+.|
T Consensus 195 ~~~~~-~~~~~----PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 268 (349)
T 3v64_C 195 RIIAD-THLFW----PNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 268 (349)
T ss_dssp EESCC-SSCSC----EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEEEE-CCCCC----cceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeE
Confidence 11100 00011 12235665566565554 46789999986543333333334456778883 44444444456778
Q ss_pred EEecCCCC
Q 011216 465 VRWEFPGN 472 (491)
Q Consensus 465 ~iw~~~~~ 472 (491)
...+..++
T Consensus 269 ~~~~~~~G 276 (349)
T 3v64_C 269 NSANKFTG 276 (349)
T ss_dssp EEEETTTC
T ss_pred EEEEccCC
Confidence 87774443
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.44 E-value=0.00017 Score=62.16 Aligned_cols=201 Identities=13% Similarity=0.124 Sum_probs=122.6
Q ss_pred cEEEEEEcCCCCEEE-EEecCCeEEEEECCCCeeeEEEe-ccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC
Q 011216 229 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 306 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 306 (491)
.+..++|+|++..|+ +...++.|...|.. ++.+..+. .-....-.|++. .++.++++.-.++.+.++++..... .
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~-i 104 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNSE-V 104 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCC-E
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCe-e
Confidence 699999999766554 57778899999998 77777764 223578889996 6666666666778899988752210 0
Q ss_pred cceeee------ccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCC
Q 011216 307 KPAGVL------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 307 ~~~~~~------~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
..+... .........|+|+|.++.|+++.......+|.+......
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~----------------------------- 155 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS----------------------------- 155 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-----------------------------
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-----------------------------
Confidence 111111 123445689999999977777766655566655421000
Q ss_pred CCCeeEEEcc-----cceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCC---------CCeeee
Q 011216 381 CDQSVATYKG-----HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRDC 446 (491)
Q Consensus 381 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~~ 446 (491)
..+..... ...........+.|. .+++++.......|.++|.. |+.+..+.-.. ...-.|
T Consensus 156 --~~l~i~~~~~~~~~~~~~d~S~l~~dp~---tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGi 229 (255)
T 3qqz_A 156 --NELHISKDKALQRQFTLDDVSGAEFNQQ---KNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGV 229 (255)
T ss_dssp --SCCEEEECHHHHHTCCSSCCCEEEEETT---TTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEE
T ss_pred --CceeeecchhhccccccCCceeEEEcCC---CCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCee
Confidence 00111100 000112223344443 46677777778889999974 66665543221 245789
Q ss_pred EecCCCCeEEEEECCCcEEEec
Q 011216 447 SWHPSQPMLVSSSWDGDVVRWE 468 (491)
Q Consensus 447 ~~s~~~~~l~s~~~Dg~i~iw~ 468 (491)
+|.++|++.++ +.-+.++++.
T Consensus 230 a~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 230 AMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EECTTCCEEEE-ETTTEEEEEE
T ss_pred EECCCCCEEEE-cCCceEEEEE
Confidence 99999985554 6666555554
No 280
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.41 E-value=0.00099 Score=60.16 Aligned_cols=227 Identities=9% Similarity=0.007 Sum_probs=127.5
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCC---
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEA--- 258 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~--- 258 (491)
+|+.+. ...|+..++.+.+...+.... ..+..++|++++..|+.+ ...+.|..+++..
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~~~-----------------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~ 64 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIPNL-----------------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEECSC-----------------SSEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred EEEEEC-CCeEEEEECCCcceEehhcCC-----------------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC
Confidence 344444 356888888876543322110 157789999866555555 4568999999876
Q ss_pred -CeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee-eccccccEEEEEEcCCCCEEEEeeC
Q 011216 259 -NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGK 336 (491)
Q Consensus 259 -~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~i~~sp~~~~l~~~~~ 336 (491)
......+...-.....+++.+.+++++++-...+.|.+.++. +..... ..........++++|.+..|+....
T Consensus 65 ~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~-----g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~ 139 (316)
T 1ijq_A 65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 139 (316)
T ss_dssp ---CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC-----CCceEEEEECCCCCcceEEeCCCCCEEEEEcc
Confidence 222222222224567889864456666666778899999975 222222 2223356789999986665554443
Q ss_pred C--CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEE
Q 011216 337 D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 414 (491)
Q Consensus 337 d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 414 (491)
. +.|...++.. .....+... ... ....+++++++..|+
T Consensus 140 ~~~~~I~~~~~dG-----------------------------------~~~~~~~~~-~~~----~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 140 GTPAKIKKGGLNG-----------------------------------VDIYSLVTE-NIQ----WPNGITLDLLSGRLY 179 (316)
T ss_dssp SSSCEEEEEETTS-----------------------------------CCEEEEECS-SCS----CEEEEEEETTTTEEE
T ss_pred CCCCeEEEEcCCC-----------------------------------CCeEEEEEC-CCC----CceEEEEeccCCEEE
Confidence 2 5777777653 111111110 011 112335666666666
Q ss_pred EEe-cCCeEEEEECCCccEEEEec--CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 415 TGS-HDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 415 ~g~-~dg~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
.+. ..+.|..+|+.......... ..-.....+++. .+.++++-...+.|..++..++.
T Consensus 180 ~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 554 46789999986433222222 122345678874 34455555556788888865543
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.41 E-value=0.00017 Score=67.20 Aligned_cols=227 Identities=10% Similarity=-0.030 Sum_probs=130.4
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCee
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKL 261 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~ 261 (491)
+|+.+. ...|+.+++............ ..+..++|.+.+..|+.. ...+.|+.+++.....
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~-----------------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 150 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNNL-----------------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 150 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECSC-----------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE
T ss_pred eeEeec-CccceeeccCCCcEEEEecCC-----------------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc
Confidence 444443 456888887765443222110 157789999865555544 4578899999987654
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEee-CC-Cc
Q 011216 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD-QA 339 (491)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~-~d-g~ 339 (491)
...+.........+++.+..++++++-...+.|.+.++. .......+.........|+++|.+..|+... .. +.
T Consensus 151 ~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d----g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~ 226 (386)
T 3v65_B 151 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD----GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR 226 (386)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT----SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC----CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence 333333334557788874566666777777889988875 2222222333335678999998766655444 33 56
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-c
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-H 418 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~ 418 (491)
|..+++.... ...+... .... ...++++|++..|+.+. .
T Consensus 227 I~r~~~dG~~-----------------------------------~~~~~~~-~~~~----PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 227 IEASSMDGSG-----------------------------------RRIIADT-HLFW----PNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EEEEETTSCS-----------------------------------CEEEECS-SCSC----EEEEEEEGGGTEEEEEETT
T ss_pred EEEEeCCCCC-----------------------------------cEEEEEC-CCCC----eeeEEEeCCCCEEEEEECC
Confidence 7777765411 1111100 0111 12235565555555554 4
Q ss_pred CCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 419 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.+.|..+|+........+.........+++ ..+.++++-...+.|..++..++
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 678999998654433333333445677888 34445555556677888874444
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.40 E-value=0.00014 Score=68.78 Aligned_cols=198 Identities=10% Similarity=0.040 Sum_probs=111.9
Q ss_pred ceEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC----e-EEEEEC
Q 011216 126 RAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----I-VHIVDV 198 (491)
Q Consensus 126 ~v~~~~~s~d--g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg----~-i~iwd~ 198 (491)
.-..++|+|+ +..|..+...+.|+.++..++... .... .......++|+++++ |+++...+ . +...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~-~~~~---~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD-IKTT---NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE-EECC---CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE-Eeec---CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 3468999995 334444443389999999877433 2221 223588999999999 55554322 1 222322
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEecCCeEEEEECCCCeeeEEEe--ccCCCeEEE
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTV 275 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~i 275 (491)
..+ ......... -.....++++| ++.++++-..++.|+.+|..++.....+. +....-..+
T Consensus 215 ~~~-~~~~~~~~~---------------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 215 ASG-FTERLSLCN---------------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp GGT-TCCEEEEEE---------------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred CCC-eeccccccc---------------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 211 110000000 01345688999 67655565567889999998776533332 122233579
Q ss_pred EEecCCCC-EEEEEeCCCeEEEEeCccccCCCcceeeecc---------------ccccEEEEEE---------cCCCCE
Q 011216 276 CFGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---------------HLEGITFIDS---------RGDGRY 330 (491)
Q Consensus 276 ~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---------------~~~~i~~i~~---------sp~~~~ 330 (491)
+|+ ++++ ++++-...+.|..++.............+.+ .-.....+++ .+++.+
T Consensus 279 a~d-pdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~l 357 (433)
T 4hw6_A 279 VWH-PTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDF 357 (433)
T ss_dssp EEC-TTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEE
T ss_pred EEe-CCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcE
Confidence 998 6777 5555556788999886411000000011111 1123567888 677777
Q ss_pred EEEeeCCCcEEEeeC
Q 011216 331 LISNGKDQAIKLWDI 345 (491)
Q Consensus 331 l~~~~~dg~i~iwd~ 345 (491)
+++-...+.|+.++.
T Consensus 358 yvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 358 YFCDRDSHTVRVLTP 372 (433)
T ss_dssp EEEETTTTEEEEECT
T ss_pred EEEECCCCEEEEECC
Confidence 777666778888874
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.0014 Score=61.29 Aligned_cols=188 Identities=11% Similarity=-0.006 Sum_probs=111.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCCcccc-ccceecccc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMES-LANVTEIHD 214 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~~ 214 (491)
.+|+.+. ...|+..++........ . .. ...+..++|++.+..|+.+. ..+.|+.+++....... ...+.. .
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~-~--~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--~ 156 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSL-I--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R 156 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEE-E--CS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--S
T ss_pred ceeEEec-cceeEEEccCCcceeEe-c--cc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--C
Confidence 3455544 46788889876532222 1 12 23588999998766666654 46789888886532100 000000 0
Q ss_pred ccccccCCCCCceecEEEEEEcCCCCEE-EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeC-CC
Q 011216 215 GLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN 292 (491)
Q Consensus 215 ~~~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~-dg 292 (491)
.......+++.+.+..| ++-...+.|.+.+++.......+...-.....|++.|..+.++++-.. .+
T Consensus 157 -----------~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~ 225 (400)
T 3p5b_L 157 -----------DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA 225 (400)
T ss_dssp -----------SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSC
T ss_pred -----------CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCC
Confidence 01156788998844444 454567889999987665444444444567899998545555554433 36
Q ss_pred eEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCC
Q 011216 293 LCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK 347 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~ 347 (491)
.|...++. +.....+ .........|++++++..|..+. ..+.|..+|+..
T Consensus 226 ~I~~~~~d-----G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 226 KIKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp CEEEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeCC-----CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 88888874 3322222 22335678999998777666554 456789988865
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.37 E-value=0.0014 Score=60.06 Aligned_cols=267 Identities=10% Similarity=0.143 Sum_probs=164.5
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCC
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
+..|.|-|+.++..+.+... . .-+.-.+|..+.|+.-. ..++.|+|+++........+.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~----AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e------------- 106 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--S----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------- 106 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--C----CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-------------
T ss_pred CCeEEEEECCCCCcceeccc--c----cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-------------
Confidence 44789999988644322211 1 12345688888877765 6899999999887766555443
Q ss_pred CceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEecc----CCCeEEEEEecCCCCEEEEEe-------CCC
Q 011216 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH----TSDVNTVCFGDESGHLIYSGS-------DDN 292 (491)
Q Consensus 225 ~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~s-------~dg 292 (491)
.|.-=.|-.+. .|+..+ +..|+-|++... .+.+.+..| ...|.....+ ++.++++..+ -.|
T Consensus 107 ----~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d-~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 107 ----DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp ----CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEEC-TTSSEEEEEEEEEETTEEEE
T ss_pred ----CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEEC-CCCCeEEEEeecccCCcccc
Confidence 34455665444 455554 457999999753 344455444 2456666665 6777776544 246
Q ss_pred eEEEEeCccccCCCcceeeeccccccEEEEEEcCCC---CEEEEeeCC---CcEEEeeCCCCC-CccccccCcccceeec
Q 011216 293 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG---RYLISNGKD---QAIKLWDIRKMS-SNASCNLGFRSYEWDY 365 (491)
Q Consensus 293 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~---~~l~~~~~d---g~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 365 (491)
.+.+|.. ..+..+.+.+|......+....+. ..++.+... +.++|.++.... ....+ ....
T Consensus 180 ~mQLYS~-----er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f-------~kk~ 247 (494)
T 1bpo_A 180 AMQLYSV-----DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKA 247 (494)
T ss_dssp EEEEEES-----TTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC-------CCEE
T ss_pred eEEEeec-----cccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc-------ccee
Confidence 7899998 456667788887766555554321 234444332 679999886531 11000 0000
Q ss_pred eeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCeee
Q 011216 366 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 445 (491)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 445 (491)
..+.++|+. ..++..++..|+.-..++.-+.-|.|++||+.++.++..-+-...+|..
T Consensus 248 vdv~fppe~----------------------~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 248 VDVFFPPEA----------------------QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp EECCCCTTS----------------------TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred eeeeCCccc----------------------ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 011111110 0111122234556778889999999999999999999887777777777
Q ss_pred eEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 446 CSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 446 ~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.+-+....-++.....|.|.--.++..
T Consensus 306 t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 306 TAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ecccCCCCcEEEEccCceEEEEEEccc
Confidence 777666666777778888877666554
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00021 Score=67.92 Aligned_cols=158 Identities=10% Similarity=0.077 Sum_probs=94.9
Q ss_pred ceEEEEEcC-CCC-EEEEEECCCeEEEEECCCCeEEEEEeec-cCCceeEEEeEe-------CCCCceEEEEecCC----
Q 011216 126 RAYVSQFSA-DGS-LFVAGFQASQIRIYDVERGWKIQKDILA-KSLRWTVTDTSL-------SPDQRHLVYASMSP---- 191 (491)
Q Consensus 126 ~v~~~~~s~-dg~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~v~~l~~-------sp~~~~l~~~~~dg---- 191 (491)
.-..|+|+| +.. ++++....+.|++.|+.++... .+... .........++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 467899998 344 4444444567999998887433 32222 112235889999 99999777776554
Q ss_pred ---eEEEEECCC-Ccccc-c--cceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECC------
Q 011216 192 ---IVHIVDVGS-GTMES-L--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE------ 257 (491)
Q Consensus 192 ---~i~iwd~~~-~~~~~-~--~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~------ 257 (491)
.|.+++... +.... . ..+... . ....++++|+ +.++++-..++.|+.+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~------------~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY------------K---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTI 283 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE------------S---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCceEEEEecCCCCceeecccceeeccC------------C---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccc
Confidence 255665443 22211 0 011100 0 3456788994 5555566678889999997
Q ss_pred -CCee-----------eEEEe--ccCCCeEEEEEecCCCCE-EEEEeCCCeEEEEeCc
Q 011216 258 -ANKL-----------SLRIL--AHTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRR 300 (491)
Q Consensus 258 -~~~~-----------~~~~~--~~~~~v~~i~~~~~~~~~-l~s~s~dg~i~iwd~~ 300 (491)
++.. ...+. +.......|+|+ ++++. +++-+..+.|+.++..
T Consensus 284 ~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 284 KNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCceeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEecC
Confidence 5543 11221 223456899998 77774 5555667788887653
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.35 E-value=0.0012 Score=59.50 Aligned_cols=187 Identities=11% Similarity=0.063 Sum_probs=108.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEEEEECCCCccccccceecccccc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (491)
+|+.+. ...|+..++.......... .... ..+..++|.+.+..|..+ ...+.|..++..++.......... +
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~-~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~----l 78 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIV-VGGL-EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----L 78 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEE-EEEE-EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC----C
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEE-ecCC-CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC----C
Confidence 344443 4578999988652111111 1111 246789999866555554 456789999987653211110000 0
Q ss_pred ccccCCCCCceecEEEEEEcCCCCEE-EEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-CCCeE
Q 011216 217 DFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLC 294 (491)
Q Consensus 217 ~~~~~~~~~h~~~v~~i~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~i 294 (491)
.....+++.+.+..| ++-...+.|.++++........+.........+++.|..+.++.+-. ..+.|
T Consensus 79 -----------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I 147 (318)
T 3sov_A 79 -----------LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147 (318)
T ss_dssp -----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred -----------CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence 135578888754444 44455788999998764433333244456789999854555444442 35788
Q ss_pred EEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCC
Q 011216 295 KVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~ 347 (491)
...++. +.....+ ...-.....|+++|++..|..+ +..+.|..+|+..
T Consensus 148 ~r~~~d-----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 148 ERAGMD-----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEETT-----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEcC-----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 888874 2222222 2223456899999976666554 4567799998864
No 287
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.20 E-value=0.00088 Score=59.51 Aligned_cols=167 Identities=12% Similarity=0.161 Sum_probs=107.9
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeecc-----CCceeEEEeEe---CCCCceEEEEec---------
Q 011216 128 YVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSL---SPDQRHLVYASM--------- 189 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~l~~---sp~~~~l~~~~~--------- 189 (491)
-+++|.+....|..++ ..++|..|+...+..... .... .....+..|.| .|+++++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 3578988666666665 789999999986533322 1111 11224688999 688887776432
Q ss_pred ----CCeEEEEECC---CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-CeEEEEECCCCee
Q 011216 190 ----SPIVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEANKL 261 (491)
Q Consensus 190 ----dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-g~i~vwd~~~~~~ 261 (491)
+..|..+|+. +++......+.....+.+... +.-......++..++|+..++++.. +.|...+......
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~---g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKA---GKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHH---SSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccc---cccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence 5789999999 777665554432111100000 0001258899999999999988888 8888888765432
Q ss_pred eEEEe-c-----cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 262 SLRIL-A-----HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 262 ~~~~~-~-----~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
..+. . .....+.|+++ +++++|++....|.+..+|+.
T Consensus 172 -~~~~~~~~~~~~~~G~nGIv~~-pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 172 -STFAWESGNGGQRPGYSGITFD-PHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp -EEEEECCCCSSSCCSCSEEEEE-TTTTEEEEESSSSSEEEEECS
T ss_pred -eeeeecCCCcccccCcceEEEe-CCCCEEEEEcCCCeEEEEcCC
Confidence 2221 1 11236799998 677777777669999999987
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.19 E-value=0.0027 Score=57.20 Aligned_cols=229 Identities=10% Similarity=0.029 Sum_probs=130.8
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEE-EEecCCeEEEEECCCCee
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~-~~~~dg~i~vwd~~~~~~ 261 (491)
+|+.+. ...|+.+++............. ...+..+.|.+.+..|+ +-...+.|..+++.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~---------------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~ 69 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGG---------------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 69 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEE---------------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecC---------------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc
Confidence 344433 4678889987664211111111 11467899998555554 444578899999877642
Q ss_pred e-EEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee-eccccccEEEEEEcCCCCEEEEeeC--C
Q 011216 262 S-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGK--D 337 (491)
Q Consensus 262 ~-~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~i~~i~~sp~~~~l~~~~~--d 337 (491)
. ..+...-.....+++.+.+++++++-...+.|.++++. +..... ..........+++.|.+..|+.... .
T Consensus 70 ~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-----G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~ 144 (318)
T 3sov_A 70 VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-----GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV 144 (318)
T ss_dssp CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS
T ss_pred eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-----CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 2 22222334567888864566676776777899999985 222222 2233456789999987666655542 4
Q ss_pred CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe
Q 011216 338 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 417 (491)
Q Consensus 338 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 417 (491)
+.|...++.... ...+-... . .....+++++++..|+.+.
T Consensus 145 ~~I~r~~~dG~~-----------------------------------~~~~~~~~-l----~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 145 PKIERAGMDGSS-----------------------------------RFIIINSE-I----YWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp CEEEEEETTSCS-----------------------------------CEEEECSS-C----SCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEcCCCC-----------------------------------eEEEEECC-C----CCccEEEEeccCCEEEEEE
Confidence 677777765411 11111000 1 1112335666666666554
Q ss_pred -cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 418 -HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 418 -~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
..+.|..+|+........+.........+++.. +.++++-...+.|..++..++.
T Consensus 185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 467899999864333222333344566777753 3344454456788888886554
No 289
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.18 E-value=0.0044 Score=57.91 Aligned_cols=228 Identities=9% Similarity=-0.005 Sum_probs=130.0
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCCC--
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEAN-- 259 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~~-- 259 (491)
+|+.+ ....|+..++.......+... ...+..++|++.+..|+.+. ..+.|+.+++...
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~-----------------~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~ 146 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPN-----------------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 146 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECS-----------------CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----
T ss_pred eeEEe-ccceeEEEccCCcceeEeccc-----------------cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC
Confidence 44444 356788888876654332211 11578999998666565554 5688999998752
Q ss_pred --eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeC-
Q 011216 260 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK- 336 (491)
Q Consensus 260 --~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~- 336 (491)
.....+.........+++.+..++++++-...+.|.+.++. .......+.........|++.|.+..|+....
T Consensus 147 ~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~----g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 147 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK----GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp -CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT----TCSEEEEEECSSCCEEEEEEETTTTEEEEEECS
T ss_pred CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC----CCceEEEEeCCCCCcceEEEecccCeEEEEeCC
Confidence 22223333445678899974466677777778899999985 22222223333445789999997666655442
Q ss_pred -CCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEE
Q 011216 337 -DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 415 (491)
Q Consensus 337 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 415 (491)
.+.|...++.... ...+... .... ...+++++++..|+.
T Consensus 223 ~~~~I~~~~~dG~~-----------------------------------~~~~~~~-~l~~----P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 223 TPAKIKKGGLNGVD-----------------------------------IYSLVTE-NIQW----PNGITLDLLSGRLYW 262 (400)
T ss_dssp SSCCEEEEETTSCS-----------------------------------CEEEECS-SCSC----EEEEEEETTTTEEEE
T ss_pred CCCEEEEEeCCCCc-----------------------------------cEEEEEC-CCCc----eEEEEEEeCCCEEEE
Confidence 3678887776421 1111100 0011 122356656666666
Q ss_pred Ee-cCCeEEEEECCCccEEEEecC--CCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 416 GS-HDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 416 g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
+. ..+.|..+|+........+.. .-.....+++. .+.++++-...+.|..++..++.
T Consensus 263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCC
T ss_pred EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCC
Confidence 64 467899999865433322222 22345567773 33344555566788888855554
No 290
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.17 E-value=0.0061 Score=60.41 Aligned_cols=205 Identities=10% Similarity=-0.021 Sum_probs=118.3
Q ss_pred CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEEEEECCCC
Q 011216 124 TSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSG 201 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~iwd~~~~ 201 (491)
-.....++|++.+..|..+. ..+.|..++++........ ...+ -..+..+++.+.++.|+.+ ...+.|.+.+++..
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v-~~~~-~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE-ECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE-EeCC-CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 34567899999776666554 4678988988754211222 2222 1258899999966655555 45689999998765
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec--CCeEEEEECCCCeeeEEEeccCCCeEEEEEec
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~ 279 (491)
....+.. .. -.....|++.|.+..|+.... .+.|...++............-...+.+++.+
T Consensus 117 ~~~~l~~-~~---------------l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~ 180 (619)
T 3s94_A 117 LRKVLFW-QE---------------LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDY 180 (619)
T ss_dssp SCEEEEC-SS---------------CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEET
T ss_pred CEEEEEe-CC---------------CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEc
Confidence 4322211 00 013567899987666665543 46777777764433322323345678999985
Q ss_pred CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCc
Q 011216 280 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 351 (491)
Q Consensus 280 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 351 (491)
.+++++++-...+.|...|+... .......+.......|++..+ ..+++-...+.|...|..++...
T Consensus 181 ~~~~LY~aD~~~~~I~~~~~dG~----~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 181 EEQKLYWADAKLNFIHKSNLDGT----NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp TTTEEEEEETTTCCEEEESSSCC----EEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cCCEEEEEeCCCCeEEEecCCCC----ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 55666666566778999988521 111111111122245666655 44555556778999988765543
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.13 E-value=0.0045 Score=62.96 Aligned_cols=187 Identities=11% Similarity=-0.013 Sum_probs=107.6
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE-ecCCeEEEEECCCCccccc-cceeccccc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESL-ANVTEIHDG 215 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~-~~dg~i~iwd~~~~~~~~~-~~~~~~~~~ 215 (491)
+|+.+ ....|+..++....... +. .. ...+..|+|.+.+..|+.+ ...+.|+.+++........ ..+.. .+
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~-l~--~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~--~~ 469 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTS-LI--PN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RD 469 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEE-EE--CS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SS
T ss_pred ccccc-cccceeEeeccCCccee-ee--cC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe--cC
Confidence 44444 34468888887653222 11 12 2257789999866555544 4557888888875321000 00000 00
Q ss_pred cccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCC-Ce
Q 011216 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NL 293 (491)
Q Consensus 216 ~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d-g~ 293 (491)
......|++.+.++.|+.+ ...+.|.+.++........+.........|++.|..+.++++-... +.
T Consensus 470 -----------l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~ 538 (791)
T 3m0c_C 470 -----------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK 538 (791)
T ss_dssp -----------CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE
T ss_pred -----------CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe
Confidence 0145678898877555544 4578899999976554333334445689999985455555554333 67
Q ss_pred EEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCC
Q 011216 294 CKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 294 i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~ 347 (491)
|...++. +.....+ .........|++++.+..|+.+ ...+.|...++..
T Consensus 539 I~~~~~d-----G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 539 IKKGGLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEEETT-----SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEecC-----CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 8888874 3333332 3333567899999776666555 4456788888865
No 292
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.0015 Score=62.04 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=98.3
Q ss_pred eEEEeEeCC-CCceEEEEec-CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEE-------cCCCCE
Q 011216 171 TVTDTSLSP-DQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-------STDGRE 241 (491)
Q Consensus 171 ~v~~l~~sp-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~-------s~~~~~ 241 (491)
....|+|+| +...|+++.. .+.|++.|++++.+..+...... .......++| +++++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~-------------~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTI-------------PTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTS-------------SCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcc-------------ccCCCcEEEEeecccccCCCCCE
Confidence 367899999 3555555544 46799999988776554332110 1125889999 999997
Q ss_pred EEEEecCC-------eEEEEECCC-Ceee-----EEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc-------c
Q 011216 242 LVAGSSDD-------CIYVYDLEA-NKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR-------C 301 (491)
Q Consensus 242 l~~~~~dg-------~i~vwd~~~-~~~~-----~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~-------~ 301 (491)
|+++...+ .|.+++... +... ..+.. -.....++++|.++.++++-..++.|..+|+. .
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t 285 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN 285 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccC
Confidence 77766554 366776444 2221 22222 12346778875577778888888999999985 2
Q ss_pred ccCC-----C-----cceeeeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCC
Q 011216 302 LNVK-----G-----KPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIR 346 (491)
Q Consensus 302 ~~~~-----~-----~~~~~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~ 346 (491)
.... . ..+... +.......|+|+|+|++|..+ .....|+.++..
T Consensus 286 g~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 286 GGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 2110 0 011111 222345789999999965544 456678886654
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.00 E-value=6.4e-05 Score=75.84 Aligned_cols=178 Identities=11% Similarity=0.015 Sum_probs=100.0
Q ss_pred CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCC----ccccccceeccccccccc
Q 011216 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG----TMESLANVTEIHDGLDFS 219 (491)
Q Consensus 145 dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~ 219 (491)
.+.|++.++.+....... ... ..+..++|.+.+..|+.+. ..+.|+.+++.+. ........ +
T Consensus 385 ~~~I~~id~~~~~~~~~~---~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~-----~---- 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLI---PNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-----D---- 451 (699)
T ss_dssp TTC-CEECTTSCCEECCS---CCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS-----C----
T ss_pred ccceEEEeCCCCcceeee---ccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC-----C----
Confidence 457888888765332211 111 2466789998777666654 4568888888751 11111100 0
Q ss_pred cCCCCCceecEEEEEEcCCC-CEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCC-CeEEEE
Q 011216 220 AADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVW 297 (491)
Q Consensus 220 ~~~~~~h~~~v~~i~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~d-g~i~iw 297 (491)
-.....|++.+.+ +++++-...+.|.++++........+.........|++.|..+.++++-... +.|.++
T Consensus 452 -------~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~ 524 (699)
T 1n7d_A 452 -------IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524 (699)
T ss_dssp -------C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBC
T ss_pred -------CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEE
Confidence 0024457777544 4444444567899999876544333322334567888874455555544333 678887
Q ss_pred eCccccCCCcceeee-ccccccEEEEEEcCCCCEE-EEeeCCCcEEEeeCCC
Q 011216 298 DRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRK 347 (491)
Q Consensus 298 d~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l-~~~~~dg~i~iwd~~~ 347 (491)
++. +.....+ .........|+|+|++..| ++-...+.|..+++..
T Consensus 525 ~~d-----G~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 525 GLN-----GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CSS-----SCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred eCC-----CCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 764 2222222 1222345679999875554 4545567799998864
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.95 E-value=0.0023 Score=57.40 Aligned_cols=193 Identities=13% Similarity=0.225 Sum_probs=117.1
Q ss_pred CCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecC---CCC---EEEEEeC---CCeEEEEeCccccCCCcc
Q 011216 238 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE---SGH---LIYSGSD---DNLCKVWDRRCLNVKGKP 308 (491)
Q Consensus 238 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~---~l~s~s~---dg~i~iwd~~~~~~~~~~ 308 (491)
....++.....+-+.+||+ +++.+..+.. +.++.+..-|. .++ ++++... +++|.+|++.. ....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp---~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG---KNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT---TTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC---CCCc
Confidence 3456666677788999999 8888777743 56777776531 111 2333333 57999997731 1122
Q ss_pred eeeecc------c-cccEEEEEE--cCC-CC-EEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccc
Q 011216 309 AGVLMG------H-LEGITFIDS--RGD-GR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 377 (491)
Q Consensus 309 ~~~~~~------~-~~~i~~i~~--sp~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
+..+.. . ...+..+++ +|. ++ ++++...+|.+..|++........
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~------------------------ 168 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI------------------------ 168 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE------------------------
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc------------------------
Confidence 333311 1 144556777 774 44 677888899999998853211000
Q ss_pred cCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECC-----CccEEEEec-CC-CCCeeeeEe--
Q 011216 378 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-----SGEQVAALK-YH-TSPVRDCSW-- 448 (491)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~~~~-- 448 (491)
..+.++++..... .-.| ...+....|+.+-++..|..++.. +++.+..+. ++ ...+..|++
T Consensus 169 ---~~~lVR~f~lgsq---~Egc----vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~ 238 (355)
T 3amr_A 169 ---SGKKVRAFKMNSQ---TEGM----AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY 238 (355)
T ss_dssp ---EEEEEEEEECSSC---EEEE----EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE
T ss_pred ---cceEEEEecCCCC---cceE----EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe
Confidence 0144555554432 2223 344567889999998778888855 345665553 22 236788888
Q ss_pred cCCCC-eEEEEE-CCCcEEEecCC
Q 011216 449 HPSQP-MLVSSS-WDGDVVRWEFP 470 (491)
Q Consensus 449 s~~~~-~l~s~~-~Dg~i~iw~~~ 470 (491)
.++++ +|++++ .++.+.+|+..
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCEEEEEEcCCCCEEEEEECC
Confidence 55666 666665 67899999986
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.95 E-value=0.00045 Score=61.35 Aligned_cols=162 Identities=13% Similarity=0.109 Sum_probs=106.7
Q ss_pred eEEEeEeCCCCceEEEEe-cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEE---cCCCCEEEEEe
Q 011216 171 TVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF---STDGRELVAGS 246 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~---s~~~~~l~~~~ 246 (491)
-..+++|.+....|..++ ..++|..|+...+..... ...... .. ......+..+.| .|+++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s----~~----g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS----SN----GDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC----CS----SCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc----cc----CCCcceeeEEEEeccCCCCcEEEEEc
Confidence 345688987665566555 789999999876654333 211100 00 001114578999 68877777544
Q ss_pred c-------------CCeEEEEECC---CCeeeEEEe--cc-----------CCCeEEEEEecCCCCEEEEEeCC-CeEEE
Q 011216 247 S-------------DDCIYVYDLE---ANKLSLRIL--AH-----------TSDVNTVCFGDESGHLIYSGSDD-NLCKV 296 (491)
Q Consensus 247 ~-------------dg~i~vwd~~---~~~~~~~~~--~~-----------~~~v~~i~~~~~~~~~l~s~s~d-g~i~i 296 (491)
. +..|..+|+. +++.+.... .. ......++.. ++++..++++.. +.|..
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIAR 163 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEE
Confidence 2 6779999999 777665443 11 1247889995 889999999888 88777
Q ss_pred EeCccccCCCcceeeec------cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 297 WDRRCLNVKGKPAGVLM------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 297 wd~~~~~~~~~~~~~~~------~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.+.. ++.+..+. ......+.|+++|+|+.|++....+.|..+|+..
T Consensus 164 V~pd-----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 164 VSAD-----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECTT-----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EeCC-----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 7763 33222221 1122366899999999988887799999999874
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.92 E-value=0.0045 Score=55.51 Aligned_cols=192 Identities=15% Similarity=0.244 Sum_probs=112.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCC----CCce--EEEEe--c--CCeEEEEECC--CCc
Q 011216 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP----DQRH--LVYAS--M--SPIVHIVDVG--SGT 202 (491)
Q Consensus 135 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp----~~~~--l~~~~--~--dg~i~iwd~~--~~~ 202 (491)
...+++.....+-+.+||+ +|+.++.... +.++.+..-| .|+. |+.++ . +++|.+|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-----g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-----GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-----SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-----CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4456666667889999999 6666665421 2455555554 2322 33333 3 5789999774 443
Q ss_pred cccccce--eccccccccccCCCCCceecEEEEEE--cCC-CC-EEEEEecCCeEEEEECC-------CCeeeEEEeccC
Q 011216 203 MESLANV--TEIHDGLDFSAADDGGYSFGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE-------ANKLSLRILAHT 269 (491)
Q Consensus 203 ~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~i~~--s~~-~~-~l~~~~~dg~i~vwd~~-------~~~~~~~~~~~~ 269 (491)
....... + .... ...+..+++ +|. ++ ++++...+|.+..|++. +.+.++++. ..
T Consensus 113 l~~i~~~~~p-v~t~-----------~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lg 179 (355)
T 3amr_A 113 LQSMTDPDHP-IATA-----------INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MN 179 (355)
T ss_dssp EEECSCTTSC-EECC-----------CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CS
T ss_pred eeeccccccC-cCCC-----------CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CC
Confidence 2222110 0 0000 014556676 664 44 67888889999999883 234556654 34
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc-CCCcceeeec-ccc-ccEEEEEE--cCCCC-EEEEee-CCCcEEE
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN-VKGKPAGVLM-GHL-EGITFIDS--RGDGR-YLISNG-KDQAIKL 342 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~-~~~-~~i~~i~~--sp~~~-~l~~~~-~dg~i~i 342 (491)
+.+..+... +....|+.+-++.-|..++.+... .....+..+. ++. ..+..|++ .++++ +|++++ .++.+.+
T Consensus 180 sq~EgcvvD-d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 180 SQTEGMAAD-DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp SCEEEEEEE-TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CCcceEEEc-CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 567788885 667788899988666666643211 1123333331 222 36777777 55665 566555 5678999
Q ss_pred eeCC
Q 011216 343 WDIR 346 (491)
Q Consensus 343 wd~~ 346 (491)
||..
T Consensus 259 ydr~ 262 (355)
T 3amr_A 259 YDRQ 262 (355)
T ss_dssp EESS
T ss_pred EECC
Confidence 9986
No 297
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.90 E-value=0.01 Score=54.33 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=60.2
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---CCEEEEEec
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 247 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~~~~~ 247 (491)
....++|.|+|++ +++...+.|.+++ +++........... ........++|+|+ +..|+++..
T Consensus 32 ~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~~~~~~~~~v~~-----------~g~~~p~gia~~pdf~~~g~lYv~~~ 97 (352)
T 2ism_A 32 VPWALAFLPDGGM-LIAERPGRIRLFR--EGRLSTYAELSVYH-----------RGESGLLGLALHPRFPQEPYVYAYRT 97 (352)
T ss_dssp CEEEEEECTTSCE-EEEETTTEEEEEE--TTEEEEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCeE-EEEeCCCeEEEEE--CCCccEeecceEee-----------cCCCCceeEEECCCCCCCCEEEEEEe
Confidence 4678999999984 4556679999998 44322111111000 01125788999998 555555543
Q ss_pred -C-----CeEEEEECCCCe-----eeE-EEe---ccCCCeEEEEEecCCCCEEEEEe
Q 011216 248 -D-----DCIYVYDLEANK-----LSL-RIL---AHTSDVNTVCFGDESGHLIYSGS 289 (491)
Q Consensus 248 -d-----g~i~vwd~~~~~-----~~~-~~~---~~~~~v~~i~~~~~~~~~l~s~s 289 (491)
. +.|..++...+. .+. .+. ........++|. +++.++++.+
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G 153 (352)
T 2ism_A 98 VAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTG 153 (352)
T ss_dssp ECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECC
T ss_pred cCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEEC
Confidence 2 678888876542 111 122 111134689997 6787666643
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.86 E-value=0.012 Score=59.96 Aligned_cols=197 Identities=9% Similarity=-0.002 Sum_probs=110.1
Q ss_pred cEEEEEEcCCCCEEE-EEecCCeEEEEECCCC----eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCcccc
Q 011216 229 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 303 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~-~~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 303 (491)
.+..++|.+....|+ +-...+.|+.+++... .....+.........|++.+..++++++-...+.|.+.++.
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--- 501 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--- 501 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC---
Confidence 577899998555554 4445678999998753 22223333445667899874455666677778899999985
Q ss_pred CCCcceeee-ccccccEEEEEEcCCCCEEEEeeC-C-CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCC
Q 011216 304 VKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 380 (491)
Q Consensus 304 ~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
+.....+ .........|++.|.+.+|+.... . +.|...++...
T Consensus 502 --G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-------------------------------- 547 (791)
T 3m0c_C 502 --GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-------------------------------- 547 (791)
T ss_dssp --SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--------------------------------
T ss_pred --CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC--------------------------------
Confidence 3333333 233455789999997666555442 2 56887777641
Q ss_pred CCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEEEECCCccEEEEecC--CCCCeeeeEecCCCCeEEE
Q 011216 381 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVS 457 (491)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s 457 (491)
....+... .+... ..+++++.+..|+.+. ..+.|..+++........+.. .-....+|++. +..|+.
T Consensus 548 ---~~~~lv~~-~l~~P----~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYw 617 (791)
T 3m0c_C 548 ---DIYSLVTE-NIQWP----NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW 617 (791)
T ss_dssp ---CEEEEECS-SCSCE----EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred ---ceEEEEeC-CCCCc----eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEE
Confidence 11111111 01111 2224454555555554 456899999855443333332 12234566663 335555
Q ss_pred EE-CCCcEEEecCCCC
Q 011216 458 SS-WDGDVVRWEFPGN 472 (491)
Q Consensus 458 ~~-~Dg~i~iw~~~~~ 472 (491)
+. ..+.|...+..++
T Consensus 618 tD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 618 TDIINEAIFSANRLTG 633 (791)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred EECCCCEEEEEeCCCC
Confidence 54 4566777765544
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.85 E-value=0.029 Score=55.60 Aligned_cols=186 Identities=10% Similarity=0.082 Sum_probs=113.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe-cCCeEEEEECCCCccccccceecccccc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHDGL 216 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 216 (491)
+|+.+ ....|+..++.+.... ......+. ..+..++|++.+..|+.+. .++.|..++++.......... ++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~-~~~~~~~~-~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-----g~ 79 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNN-VAIPLTGV-KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-----GL 79 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCE-EECCCCSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-----SC
T ss_pred EEEEE-eCCcEEEEECCCCCcc-eEEEcCCC-CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-----CC
Confidence 45544 4568999999865322 22222222 2578999999776666554 568899999876543322211 00
Q ss_pred ccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEE-eCCCeE
Q 011216 217 DFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLC 294 (491)
Q Consensus 217 ~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~-s~dg~i 294 (491)
.....+++.+.+..|+.+ ...+.|.+.++........+...-.....|++.|..+.++++- +..+.|
T Consensus 80 -----------~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 80 -----------DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp -----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred -----------CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 135578888765555444 4568899999876543222223445678999985556555543 225678
Q ss_pred EEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCC
Q 011216 295 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 295 ~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~ 347 (491)
...++. +.....+.........|+++++++.|..+ ...+.|..+|+..
T Consensus 149 ~r~~~d-----G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 149 DRAAMD-----GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp EEEETT-----SCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCC-----CCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence 777774 33333333344567899999976666554 4567788888865
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.81 E-value=0.0058 Score=55.99 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=81.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---ccCCceeEEEeEeCCC---CceEEEEec-C-----CeE
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYASM-S-----PIV 193 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~l~~sp~---~~~l~~~~~-d-----g~i 193 (491)
.-..++|.|||+++++ ..+|.|.+++ ++. ...... ..........|+|+|+ +..|.++.. . +.|
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4578999999995555 5679999998 442 111111 1112346889999998 555554433 2 578
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-------------CCeEEEEECCCC-
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN- 259 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-------------dg~i~vwd~~~~- 259 (491)
..++...+.......+. .. ++......|. ...++|.|||.++++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~---~~--~p~~~~~~h~--~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVL---DG--IPARPHGLHS--GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEECSSCEEEEEEEE---EE--ECCCTTCCCC--CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred EEEEeCCCCcCceEEEE---Ee--CCCCCCCCcC--CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 88887654221110110 00 1100111232 357999999976665432 256666665431
Q ss_pred ------------eeeEEEeccCCCeEEEEEecCCCCEEEEEeC
Q 011216 260 ------------KLSLRILAHTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 260 ------------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~ 290 (491)
.......++ .....++|.|.+++++++-..
T Consensus 181 p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG 222 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC
T ss_pred CCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC
Confidence 111111133 235678897446776655443
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.79 E-value=0.036 Score=54.95 Aligned_cols=226 Identities=8% Similarity=0.006 Sum_probs=131.1
Q ss_pred eEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCee
Q 011216 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKL 261 (491)
Q Consensus 183 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~ 261 (491)
+|+.+ ....|+..++++........+... ..+..++|++.+..|+.+ ..++.|+.+++.....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~---------------~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~ 71 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGV---------------KEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSC---------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCC---------------CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc
Confidence 45544 467899999986543222221111 157789999866665554 4578899999876544
Q ss_pred eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEeeC--CC
Q 011216 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK--DQ 338 (491)
Q Consensus 262 ~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~--dg 338 (491)
...+.........+++.+..++++++-...+.|.+.++. +.....+ .........|++.|....|..... .+
T Consensus 72 ~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-----G~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~ 146 (628)
T 4a0p_A 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-----GQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP 146 (628)
T ss_dssp EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----STTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-----CCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence 333332334577888864556666776677899999985 2222222 233455789999986555554442 45
Q ss_pred cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-
Q 011216 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS- 417 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~- 417 (491)
.|...++.... ...+-. ..... ..++++++++.|+.+.
T Consensus 147 ~I~r~~~dG~~-----------------------------------~~~l~~--~~~~P----~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 147 KIDRAAMDGSE-----------------------------------RTTLVP--NVGRA----NGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EEEEEETTSCS-----------------------------------CEEEEC--SCSSE----EEEEEETTTTEEEEEET
T ss_pred EEEEEeCCCCc-----------------------------------eEEEEC--CCCCc----ceEEEccccCEEEEEEC
Confidence 67777765421 111111 01111 2234555666666554
Q ss_pred cCCeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEE-CCCcEEEecCCCCC
Q 011216 418 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGNG 473 (491)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~Dg~i~iw~~~~~~ 473 (491)
..+.|..+|+..... ..+...-.....+++.. + .|+.+. ..+.|...|..++.
T Consensus 186 ~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp TTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence 467899999865433 33333334456777754 3 444444 46788888865554
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.78 E-value=0.0083 Score=53.57 Aligned_cols=188 Identities=18% Similarity=0.137 Sum_probs=96.1
Q ss_pred CCCEEEEEE-CC-----CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-----CeEEEEECCCCc-
Q 011216 135 DGSLFVAGF-QA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT- 202 (491)
Q Consensus 135 dg~~l~~~~-~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-----g~i~iwd~~~~~- 202 (491)
++.+++.|+ .+ ..+.+||..++.- ...............+. .+++.++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEW-SFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeE-EeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 455666666 32 3688999887632 22211111111111222 357777777755 468999998876
Q ss_pred --cccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----CeEEEEECCCCeeeEEEeccC-CCeEE
Q 011216 203 --MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHT-SDVNT 274 (491)
Q Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~-~~v~~ 274 (491)
.......+.. ...| ..+.+ +++.++.|+.+ ..+.+||+.+.+....-.... ..-.+
T Consensus 91 ~~W~~~~~~p~~----------r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 154 (301)
T 2vpj_A 91 GVWYSVAPMNVR----------RGLA----GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAG 154 (301)
T ss_dssp CCCEEECCCSSC----------CBSC----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCE
T ss_pred CeeEECCCCCCC----------ccce----eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccce
Confidence 4333222111 1112 12222 57777777653 368999998877543221111 11122
Q ss_pred EEEecCCCCEEEEEeCC-----CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-----CcEEEee
Q 011216 275 VCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWD 344 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-----g~i~iwd 344 (491)
++. .++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+||
T Consensus 155 ~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd 228 (301)
T 2vpj_A 155 LVV--ASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYN 228 (301)
T ss_dssp EEE--ETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEE
T ss_pred EEE--ECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEe
Confidence 333 256677777654 45788887521 11111111111111222223 56677777764 3578888
Q ss_pred CCC
Q 011216 345 IRK 347 (491)
Q Consensus 345 ~~~ 347 (491)
+.+
T Consensus 229 ~~~ 231 (301)
T 2vpj_A 229 IRT 231 (301)
T ss_dssp TTT
T ss_pred CCC
Confidence 765
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.78 E-value=0.0021 Score=57.58 Aligned_cols=146 Identities=17% Similarity=0.141 Sum_probs=73.6
Q ss_pred CCceEEEEe-cC-----CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----
Q 011216 180 DQRHLVYAS-MS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----- 248 (491)
Q Consensus 180 ~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d----- 248 (491)
++..++.|+ .+ ..+.+||..+++.......+.. ..+|. .+. .++..++.|+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~----------r~~~~----~~~--~~~~l~v~GG~~~~~~~ 77 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK----------RRYVA----SVS--LHDRIYVIGGYDGRSRL 77 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC----------CBSCE----EEE--ETTEEEEECCBCSSCBC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh----------hcccc----EEE--ECCEEEEEcCCCCCccC
Confidence 445566666 32 3688999888765444322211 11121 122 256777777754
Q ss_pred CeEEEEECCCCe---eeEEEec-cCCCeEEEEEecCCCCEEEEEeCC-----CeEEEEeCccccCCCcceeeeccccccE
Q 011216 249 DCIYVYDLEANK---LSLRILA-HTSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 249 g~i~vwd~~~~~---~~~~~~~-~~~~v~~i~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
..+.+||+.+++ ....-.. ....-.+++. .++.+++.|+.+ ..+.+||.... ....+..+......-
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~ 153 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNID--QWSMLGDMQTAREGA 153 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTT--EEEEEEECSSCCBSC
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCC--eEEECCCCCCCcccc
Confidence 469999998876 3322111 1111122333 246677777654 35788887521 111222222111112
Q ss_pred EEEEEcCCCCEEEEeeCC-----CcEEEeeCCC
Q 011216 320 TFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 320 ~~i~~sp~~~~l~~~~~d-----g~i~iwd~~~ 347 (491)
..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 154 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 154 GLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 22222 56777777654 3477777765
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.76 E-value=0.017 Score=57.32 Aligned_cols=182 Identities=11% Similarity=0.077 Sum_probs=102.6
Q ss_pred CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec-CCeEEEEECCCCccccccceeccccccccccCC
Q 011216 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (491)
Q Consensus 144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
....|+..++........ ...... ..+..++|++.+..|+.+.. .+.|..++++........ ... +
T Consensus 16 ~~~~I~~i~~~~~~~~~~-~~~~~~-~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v-~~~---~------- 82 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT-IVVGGL-EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-VVS---G------- 82 (619)
T ss_dssp CSSBEEEECCC----------CBCC-SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEE-ECS---S-------
T ss_pred ccccEEEEeCCCCcceEE-EEEcCC-CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEE-EeC---C-------
Confidence 345788888875421111 112222 24778999997776766654 578888888754211100 000 0
Q ss_pred CCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe-CCCeEEEEeCc
Q 011216 223 DGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRR 300 (491)
Q Consensus 223 ~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s-~dg~i~iwd~~ 300 (491)
-.....+++.+.++.|+.+ ...+.|.+.++........+...-.....|++.|..+.++++-- ..+.|...++.
T Consensus 83 ----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d 158 (619)
T 3s94_A 83 ----LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD 158 (619)
T ss_dssp ----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred ----CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC
Confidence 0157789999866555554 45789999999765433233244456788999755555555542 24567666664
Q ss_pred cccCCCcceeee-ccccccEEEEEEcCCCCEEEEe-eCCCcEEEeeCCC
Q 011216 301 CLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISN-GKDQAIKLWDIRK 347 (491)
Q Consensus 301 ~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~-~~dg~i~iwd~~~ 347 (491)
+.....+ .........|+++++++.|..+ ...+.|...|+..
T Consensus 159 -----G~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 159 -----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp -----SCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred -----CCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 3322222 2234457899999876665544 4556788888765
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.69 E-value=0.0055 Score=54.79 Aligned_cols=188 Identities=14% Similarity=0.118 Sum_probs=94.7
Q ss_pred CCCEEEEEECC----CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC-----CeEEEEECCCCcccc
Q 011216 135 DGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMES 205 (491)
Q Consensus 135 dg~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 205 (491)
++.+++.|+.+ ..+..||..+..- ............-..+.+ +++.++.|+.+ ..+.+||..+.+...
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 34556666643 3588899887732 222111111111112222 67777777754 358889988876554
Q ss_pred ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC-----eEEEEECCCCeeeEEEec-cCCCeEEEEEec
Q 011216 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILA-HTSDVNTVCFGD 279 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~-~~~~v~~i~~~~ 279 (491)
....+.. ...|. .+.+ +++.++.|+.++ .+.+||+.+.+....-.. ....-.+++..
T Consensus 92 ~~~~p~~----------r~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 154 (302)
T 2xn4_A 92 VANMRDR----------RSTLG----AAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV- 154 (302)
T ss_dssp ECCCSSC----------CBSCE----EEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CCCCCcc----------ccceE----EEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-
Confidence 4332211 11121 1222 567777777653 588899988765432111 11111223332
Q ss_pred CCCCEEEEEeCC-------CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC-----cEEEeeCCC
Q 011216 280 ESGHLIYSGSDD-------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRK 347 (491)
Q Consensus 280 ~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-----~i~iwd~~~ 347 (491)
++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 155 -~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 229 (302)
T 2xn4_A 155 -GGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT 229 (302)
T ss_dssp -TTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT
T ss_pred -CCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 45677776643 35788887521 11111111111111222223 567777777643 577888765
No 306
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.69 E-value=0.05 Score=57.94 Aligned_cols=184 Identities=11% Similarity=0.096 Sum_probs=99.0
Q ss_pred CCEEEEEe----------cCCeEEEEECCCCeeeEEE-eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCc
Q 011216 239 GRELVAGS----------SDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 307 (491)
Q Consensus 239 ~~~l~~~~----------~dg~i~vwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 307 (491)
..+|++|+ ..|.|++|++..++..... ....++|++++-. +++++++. ..+|++|++. ..+
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy~l~----~~~ 915 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLYEWT----TEK 915 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEEEEC----TTS
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEEECC----CCc
Confidence 46888876 3578999999755433222 2456889998864 45444443 4689999986 333
Q ss_pred ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEE
Q 011216 308 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 387 (491)
Q Consensus 308 ~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
.+..-..+-..|..+.....+.++++|..-..+.++..+... ..+..
T Consensus 916 ~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~---------------------------------~~L~~ 962 (1158)
T 3ei3_A 916 ELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME---------------------------------GNFEE 962 (1158)
T ss_dssp CEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT---------------------------------TEEEE
T ss_pred eEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC---------------------------------CeEEE
Confidence 332111111112222222246788888877777776543311 22233
Q ss_pred EcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCc--------cEEEEecCC-CCCeeeeE---ecCCC---
Q 011216 388 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--------EQVAALKYH-TSPVRDCS---WHPSQ--- 452 (491)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--------~~~~~~~~h-~~~v~~~~---~s~~~--- 452 (491)
+........+..+.+- +...++.+..+|.+.++..... +....-.-| ...|+++. +.+.+
T Consensus 963 ~a~D~~~~~vta~~~l-----d~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~ 1037 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEIL-----DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGE 1037 (1158)
T ss_dssp EEECCSCBCEEEEEEE-----ETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC----
T ss_pred EEeecccccEEEEEEE-----ccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCcc
Confidence 3222222222222221 2346788889999998876431 122111222 33466654 33322
Q ss_pred ------CeEEEEECCCcEEEec
Q 011216 453 ------PMLVSSSWDGDVVRWE 468 (491)
Q Consensus 453 ------~~l~s~~~Dg~i~iw~ 468 (491)
..++-++.+|.|.+.-
T Consensus 1038 ~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A 1038 TSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp ---CEEEEEEEEETTSCEEEEE
T ss_pred ccccccceEEEEecCCEEEEEE
Confidence 3577788899987654
No 307
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.68 E-value=0.0058 Score=54.65 Aligned_cols=230 Identities=13% Similarity=0.109 Sum_probs=109.7
Q ss_pred CceEEEEecC----CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----CeE
Q 011216 181 QRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCI 251 (491)
Q Consensus 181 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-----g~i 251 (491)
+..++.|+.+ ..+..+|..+.+.......+. ...+|. .+.+ ++..++.|+.+ ..+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~----------~r~~~~----~~~~--~~~lyv~GG~~~~~~~~~~ 79 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS----------RRCRAG----MVYM--AGLVFAVGGFNGSLRVRTV 79 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS----------CCBSCE----EEEE--TTEEEEESCBCSSSBCCCE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc----------ccccce----EEEE--CCEEEEEeCcCCCccccce
Confidence 3455555543 357888888776544322211 111221 1222 66777777754 358
Q ss_pred EEEECCCCeeeEEEecc-CCCeEEEEEecCCCCEEEEEeCCC-----eEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 252 YVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 252 ~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
.+||..+.+....-... ...-.+++. .++.+++.|+.++ .+.+||+... ....+..+.........+.+
T Consensus 80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~- 154 (302)
T 2xn4_A 80 DSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGVGVV- 154 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEE-
T ss_pred EEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceEEEE-
Confidence 89999887653322111 111122333 2466777777553 4677776521 11111111111111122222
Q ss_pred CCCCEEEEeeCC-------CcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeE
Q 011216 326 GDGRYLISNGKD-------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 398 (491)
Q Consensus 326 p~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (491)
++++++.|+.+ ..+.+||+.+.. |.. ...........
T Consensus 155 -~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------------W~~----------------------~~~~p~~r~~~ 198 (302)
T 2xn4_A 155 -GGLLYAVGGYDVASRQCLSTVECYNATTNE-------------WTY----------------------IAEMSTRRSGA 198 (302)
T ss_dssp -TTEEEEECCEETTTTEECCCEEEEETTTTE-------------EEE----------------------ECCCSSCCBSC
T ss_pred -CCEEEEEeCCCCCCCccccEEEEEeCCCCc-------------EEE----------------------CCCCccccccc
Confidence 56666766543 347777776521 110 00000000000
Q ss_pred EEEecCcccCCCcEEEEEecC-----CeEEEEECCCccEEEEecCCCCCeeeeEecCCCCeEEEEECCC-----cEEEec
Q 011216 399 RCHFSPVYSTGQKYIYTGSHD-----SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWE 468 (491)
Q Consensus 399 ~~~~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~Dg-----~i~iw~ 468 (491)
.+ ..-++++++.|+.+ ..+.+||+.+.+-...-..........+..-++++++.|+.++ .+.+||
T Consensus 199 ~~-----~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd 273 (302)
T 2xn4_A 199 GV-----GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYN 273 (302)
T ss_dssp EE-----EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEE
T ss_pred cE-----EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEc
Confidence 00 01156777777664 3689999987653322111111111111222677777877654 488888
Q ss_pred CCCC
Q 011216 469 FPGN 472 (491)
Q Consensus 469 ~~~~ 472 (491)
+.++
T Consensus 274 ~~~~ 277 (302)
T 2xn4_A 274 PTTD 277 (302)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8765
No 308
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.67 E-value=0.089 Score=56.06 Aligned_cols=194 Identities=12% Similarity=0.074 Sum_probs=101.6
Q ss_pred CCCceEEEEEcCC------CCEEEEEEC-CCeEEEEECCCCeEEEEEeecc-CCceeEEEeEeCCCCceEEEEecCCeEE
Q 011216 123 TTSRAYVSQFSAD------GSLFVAGFQ-ASQIRIYDVERGWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (491)
Q Consensus 123 h~~~v~~~~~s~d------g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~dg~i~ 194 (491)
....|.|+++.|. ++++|+|.. |++|+|+++.+.+.+....... .....|.-+.+ ....+|..|-.||.+.
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~ 630 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALF 630 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEE
Confidence 3568999999864 369999997 9999999998765554332211 11222333334 2346888899999876
Q ss_pred EEECC--CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 195 IVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 195 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
-+.++ ++......... -| ..++.-..+...+..-+.+..+....++.-. ++.... .-.-..+
T Consensus 631 ~~~~d~~tg~l~d~r~~~---LG-----------~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v 694 (1158)
T 3ei3_A 631 YFGLNIETGLLSDRKKVT---LG-----------TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEV 694 (1158)
T ss_dssp EEEECTTTCCEEEEEEEE---CC-----------SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCC
T ss_pred EEEEcCCCCccccceeEE---cC-----------CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHh
Confidence 66554 34332111100 00 0133333444444433333334444444433 332211 1111233
Q ss_pred E-EEEEecCC-CCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC
Q 011216 273 N-TVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 273 ~-~i~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d 337 (491)
. ...|+... .+-++..+ ++.++|..+... ..-.+..+. -...+..++++|+.+.++.+..+
T Consensus 695 ~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~--~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 695 NYMCPLNSDGYPDSLALAN-NSTLTIGTIDEI--QKLHIRTVP-LYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp CEEEEECCSSSTTEEEEEC-SSCEEEEEECCS--SSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred ceEeccCcccCCCcEEEEc-CCceEEEEeccc--CCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEe
Confidence 3 33454221 23444443 456888887522 112222222 23578899999988887766543
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.66 E-value=0.007 Score=54.20 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=57.1
Q ss_pred CceEEEEecC--CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC----CeEEEE
Q 011216 181 QRHLVYASMS--PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVY 254 (491)
Q Consensus 181 ~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d----g~i~vw 254 (491)
+.+++.|+.+ ..+.+||..+++.......+.. ..+| ..+.+ ++..++.|+.+ ..+.+|
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~----------r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~ 75 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK----------RRDA----ACVFW--DNVVYILGGSQLFPIKRMDCY 75 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCC----------CBSC----EEEEE--TTEEEEECCBSSSBCCEEEEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcc----------ccee----EEEEE--CCEEEEEeCCCCCCcceEEEE
Confidence 3455566543 5789999988776544332211 1112 12222 56677777754 679999
Q ss_pred ECCCCeeeEEEeccCC-CeEEEEEecCCCCEEEEEeCC------CeEEEEeCc
Q 011216 255 DLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDD------NLCKVWDRR 300 (491)
Q Consensus 255 d~~~~~~~~~~~~~~~-~v~~i~~~~~~~~~l~s~s~d------g~i~iwd~~ 300 (491)
|+.+++....-..... .-.+++. .++.+++.|+.+ ..+.+||..
T Consensus 76 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~ 126 (306)
T 3ii7_A 76 NVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTR 126 (306)
T ss_dssp ETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETT
T ss_pred eCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCC
Confidence 9988875432211111 1122222 256677777765 458888875
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.62 E-value=0.00031 Score=70.82 Aligned_cols=220 Identities=10% Similarity=0.016 Sum_probs=116.0
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-cCCeEEEEECCC----CeeeEE
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA----NKLSLR 264 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~-~dg~i~vwd~~~----~~~~~~ 264 (491)
.+.|+..++.+.....+..... .+..++|.+.+..|+.+. ..+.|+.+++.. ......
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~-----------------~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~ 447 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLR-----------------NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV 447 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCT-----------------TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB
T ss_pred ccceEEEeCCCCcceeeeccCc-----------------ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE
Confidence 3567777776655433322111 355789998766666654 457899999875 222222
Q ss_pred EeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-ccccccEEEEEEcCCCCEEEEeeC-C-CcEE
Q 011216 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGK-D-QAIK 341 (491)
Q Consensus 265 ~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~i~~i~~sp~~~~l~~~~~-d-g~i~ 341 (491)
+.........|++.+..++++++-...+.|.++++. +.....+ .........|+++|.+.+|+.... . +.|.
T Consensus 448 i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d-----g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~ 522 (699)
T 1n7d_A 448 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-----GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIK 522 (699)
T ss_dssp CCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS-----SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEE
T ss_pred EeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC-----CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEE
Confidence 211223356677754456666666667889999975 2222222 222234567889886555544432 2 5677
Q ss_pred EeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEE-ecCC
Q 011216 342 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG-SHDS 420 (491)
Q Consensus 342 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg 420 (491)
++++.... ...+.... . .....++++|++..|+.+ ...+
T Consensus 523 ~~~~dG~~-----------------------------------~~~l~~~~-l----~~PnGlavd~~~~~LY~aD~~~~ 562 (699)
T 1n7d_A 523 KGGLNGVD-----------------------------------IYSLVTEN-I----QWPNGITLDLLSGRLYWVDSKLH 562 (699)
T ss_dssp BCCSSSCC-----------------------------------CCEESCSS-C----SSCCCEEECTTTCCEEEEETTTT
T ss_pred EEeCCCCC-----------------------------------eeEEEeCC-C----CCccEEEEeccCCEEEEEecCCC
Confidence 76664311 01110000 0 011223566665555544 4567
Q ss_pred eEEEEECCCccEEEEec--CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCC
Q 011216 421 CVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 472 (491)
Q Consensus 421 ~i~iwd~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~ 472 (491)
.|..+++........+. ........|++..+ .++++....+.|..++..++
T Consensus 563 ~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp EEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred eEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 89999986433332222 11233456666543 34444445678888876543
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.60 E-value=0.013 Score=53.14 Aligned_cols=192 Identities=11% Similarity=0.030 Sum_probs=104.5
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (491)
+.++.+.+.+++..++++ .+|.|.. ..+.+....... ......+..+++.|++.+++++...+..+-+|- .+..-
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW 196 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAW 196 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSC
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCce
Confidence 457888888887766655 4554422 223343333322 223346889999999887776644333333332 12211
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe-c---cCCCeEEEEEecC
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-A---HTSDVNTVCFGDE 280 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~---~~~~v~~i~~~~~ 280 (491)
..... .....+..+.+.++++.+ .++.+|.+++.+...++.-..+. . +...+.++.+. +
T Consensus 197 ~~~~~---------------~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~-~ 259 (327)
T 2xbg_A 197 EPHNR---------------TTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR-T 259 (327)
T ss_dssp EEEEC---------------CSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES-S
T ss_pred eECCC---------------CCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec-C
Confidence 11110 011267888999988754 55567888777533333222221 1 22358889887 5
Q ss_pred CCCEEEEEeCCCeEEEEeCccccCCCcceeeec---cccccEEEEEEcCCCCEEEEeeCCCcEEEeeC
Q 011216 281 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 281 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~ 345 (491)
++.+++++ .+|.|. +... .++.-..+. .....+..+.|.++++ +++++.+|.|.-++-
T Consensus 260 ~~~~~~~g-~~g~i~-~S~D----gG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 260 PNEVWLAG-GAGALL-CSQD----GGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSCEEEEE-STTCEE-EESS----TTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CCEEEEEe-CCCeEE-EeCC----CCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 56666655 466663 3332 222222222 2235677888875554 666677888777664
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.60 E-value=0.0097 Score=54.06 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=109.4
Q ss_pred EEEEEcCCCCEEEEEE------------CCCeEEEEECCCC-eEEEEEeecc----CCceeEEEeEeCC--CCc-eEEEE
Q 011216 128 YVSQFSADGSLFVAGF------------QASQIRIYDVERG-WKIQKDILAK----SLRWTVTDTSLSP--DQR-HLVYA 187 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~------------~dg~i~vw~~~~~-~~~~~~~~~~----~~~~~v~~l~~sp--~~~-~l~~~ 187 (491)
-.++..|+|..+++++ .+|.|.++|..+. .....+.... ........+.+.+ ++. +|+++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 4566788886555542 6899999998742 1122222211 1234566777655 443 44444
Q ss_pred e-c--CCeEEEEECCCCcc-ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe-----------------
Q 011216 188 S-M--SPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------------- 246 (491)
Q Consensus 188 ~-~--dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~----------------- 246 (491)
. . +.+|.+|+++.+.. ....... .+. .-....++.+.++|++.++..
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~---~g~---------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTI---RHK---------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEE---CCT---------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEecc---ccC---------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 2 2 46788888765422 1111111 010 111578899999998666643
Q ss_pred cCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEE-eCCCeEEEEeCccccCCCcceeeeccccccEEEEEEc
Q 011216 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 325 (491)
Q Consensus 247 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~s 325 (491)
..|.|+-+|. ++. ..+...-...+.++|+ ++++.|+.+ +..+.|..|++.... .......+ ......-.+++.
T Consensus 201 ~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s-pDg~~lYvadt~~~~I~~~~~~~~g-~l~~~~~~-~~~g~PDGi~vD 274 (355)
T 3sre_A 201 AWSFVTYYSP--NDV-RVVAEGFDFANGINIS-PDGKYVYIAELLAHKIHVYEKHANW-TLTPLRVL-SFDTLVDNISVD 274 (355)
T ss_dssp CCEEEEEECT--TCC-EEEEEEESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTS-CEEEEEEE-ECSSEEEEEEEC
T ss_pred CccEEEEEEC--CeE-EEeecCCcccCcceEC-CCCCEEEEEeCCCCeEEEEEECCCC-cEecCEEE-eCCCCCceEEEe
Confidence 1255666665 332 2333334567999998 666655554 567899999986211 11111222 223456778899
Q ss_pred C-CCCEEEEeeCCC-cEEEee
Q 011216 326 G-DGRYLISNGKDQ-AIKLWD 344 (491)
Q Consensus 326 p-~~~~l~~~~~dg-~i~iwd 344 (491)
+ +|++.+++..++ .|..|+
T Consensus 275 ~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 275 PVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp TTTCCEEEEEESCHHHHHSCC
T ss_pred CCCCcEEEEecCCceEEEEEC
Confidence 8 588777665443 344443
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.57 E-value=0.024 Score=50.68 Aligned_cols=186 Identities=10% Similarity=0.047 Sum_probs=94.8
Q ss_pred CEEEEEEC--CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC----CeEEEEECCCCcccccccee
Q 011216 137 SLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS----PIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 137 ~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~ 210 (491)
.+++.|+. ...+.+||..++.-. ........+..-..+. -+++.++.|+.+ ..+.+||..+++.......+
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555654 357889999887322 2211111111122222 267777777755 67889999887664443222
Q ss_pred ccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC------CeEEEEECCCCeeeEEEecc-CCCeEEEEEecCCCC
Q 011216 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGH 283 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~ 283 (491)
.. ..+| ..+.+ +++.++.|+.+ ..+.+||..+.+....-... ...-.+++. .++.
T Consensus 90 ~~----------r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 151 (306)
T 3ii7_A 90 TP----------RDSL----AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGL 151 (306)
T ss_dssp SC----------CBSC----EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTE
T ss_pred cc----------ccce----eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCE
Confidence 11 1112 12222 67777777765 45999999888754321111 111122233 2456
Q ss_pred EEEEEeC---------CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-----CcEEEeeCCC
Q 011216 284 LIYSGSD---------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 284 ~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-----g~i~iwd~~~ 347 (491)
+++.|+. -..+.+||+... ....+..+......-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 7777653 345788887521 11111111111111122222 56677777654 3577888765
No 314
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.57 E-value=0.0045 Score=65.41 Aligned_cols=269 Identities=10% Similarity=0.150 Sum_probs=153.4
Q ss_pred CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCC
Q 011216 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (491)
Q Consensus 144 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (491)
....|.|-|+.++..+.+... ..-+.-.+|..+.|+.-. ..++.|+|+++........+.+
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e------------ 106 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD------------ 106 (1630)
T ss_pred CCceEEEEECCCCCCcccccc------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC------------
Confidence 344789999988644322111 122345688888777654 6799999999877666555443
Q ss_pred CCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC-eeeEEEecc----CCCeEEEEEecCCCCEEEEEe-------CC
Q 011216 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH----TSDVNTVCFGDESGHLIYSGS-------DD 291 (491)
Q Consensus 224 ~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~----~~~v~~i~~~~~~~~~l~s~s-------~d 291 (491)
+|.-=.|-.+.. |+..+ +..|+.|++... .+...+..| ...|..-..+ ++.++++..+ -.
T Consensus 107 -----~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d-~~~kW~~l~gi~~~~~~v~ 178 (1630)
T 1xi4_A 107 -----DVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTD-AKQKWLLLTGISAQQNRVV 178 (1630)
T ss_pred -----CceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeC-CCCCeEEEEeeccCCCccc
Confidence 465667765443 44443 456999999743 333333333 3456666665 6667766443 35
Q ss_pred CeEEEEeCccccCCCcceeeeccccccEEEEEEcC--C-CCEEEEeeC---CCcEEEeeCCCC-CCccccccCcccceee
Q 011216 292 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG--D-GRYLISNGK---DQAIKLWDIRKM-SSNASCNLGFRSYEWD 364 (491)
Q Consensus 292 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp--~-~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 364 (491)
|.+.+|... .+..+.+.||......+.... . ...++.+.. .+.++|.++... .....+
T Consensus 179 G~mQLyS~e-----r~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f---------- 243 (1630)
T 1xi4_A 179 GAMQLYSVD-----RKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---------- 243 (1630)
T ss_pred ceeeeeecc-----cccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC----------
Confidence 788999874 455556677766554444421 1 223332222 267888888653 111100
Q ss_pred ceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccEEEEecCCCCCee
Q 011216 365 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR 444 (491)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 444 (491)
.. +.+..+-.. ....++..++..|+.-..++.-+.-|.|++||+.+|.++..-+-...+|.
T Consensus 244 ------~k----------k~~~~~~~~---~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 244 ------PK----------KAVDVFFPP---EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred ------cc----------ccccccCCc---ccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 00 000000000 01111222334555677888889999999999999998876555555565
Q ss_pred eeEecCCCCeEEEEECCCcEEEecCCCCC
Q 011216 445 DCSWHPSQPMLVSSSWDGDVVRWEFPGNG 473 (491)
Q Consensus 445 ~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~ 473 (491)
..+-+....-++.....|.|.--.++...
T Consensus 305 ~~~~~~~~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred EeccCCCCCceEEEcCCceEEEEEEccch
Confidence 55554443445555566766655555443
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.56 E-value=0.018 Score=51.58 Aligned_cols=190 Identities=12% Similarity=0.045 Sum_probs=96.9
Q ss_pred cCCCCEEEEEECC----CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec----C-----CeEEEEECC
Q 011216 133 SADGSLFVAGFQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S-----PIVHIVDVG 199 (491)
Q Consensus 133 s~dg~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~----d-----g~i~iwd~~ 199 (491)
.-++.+++.|+.+ ..+.+||..++.- .........+..-..+.+ ++++++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTW-LRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeE-eECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 3456777777642 3688999887632 222111111111112222 6777777765 2 368889988
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-----CeEEEEECCCCeeeEEEec-cCCCeE
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILA-HTSDVN 273 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-~~~~v~ 273 (491)
+.+.......+.. ...| ..+.+ +++.++.|+.+ ..+.+||+.+.+....-.. ....-.
T Consensus 99 ~~~W~~~~~~p~~----------r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 162 (308)
T 1zgk_A 99 TNQWSPCAPMSVP----------RNRI----GVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV 162 (308)
T ss_dssp TTEEEECCCCSSC----------CBTC----EEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred CCeEeECCCCCcC----------cccc----EEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce
Confidence 8765544332211 1112 12222 56777777643 4588999988765332111 111112
Q ss_pred EEEEecCCCCEEEEEeCC-----CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC-----CcEEEe
Q 011216 274 TVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLW 343 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d-----g~i~iw 343 (491)
+++.. ++.+++.|+.+ ..+.+||+... ....+..+.........+.+ ++++++.|+.+ ..+.+|
T Consensus 163 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 163 GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 23332 46677777654 45788887521 11111111111112222333 56777777664 457888
Q ss_pred eCCC
Q 011216 344 DIRK 347 (491)
Q Consensus 344 d~~~ 347 (491)
|+.+
T Consensus 237 d~~~ 240 (308)
T 1zgk_A 237 DVET 240 (308)
T ss_dssp ETTT
T ss_pred eCCC
Confidence 8765
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.52 E-value=0.016 Score=52.01 Aligned_cols=184 Identities=13% Similarity=0.071 Sum_probs=92.9
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec----C-------CeEEEEECCCCccccc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----S-------PIVHIVDVGSGTMESL 206 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~ 206 (491)
+++.|+ ..+.+||..++.-..........+ ....+...+++.++.|+. + ..+.+||..+++....
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPK--NHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCS--SEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCc--cceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 344554 579999998874332111111111 122233357788888874 1 1378889888776444
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC--------CeEEEEECCCCeeeEEEec-cCCCeEEEEE
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILA-HTSDVNTVCF 277 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~-~~~~v~~i~~ 277 (491)
...+... .+| ..+.+ +++.++.|+.+ ..+.+||..+++....-.. ....-.+++.
T Consensus 83 ~~~p~~r----------~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 146 (315)
T 4asc_A 83 PPLPSPR----------CLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS 146 (315)
T ss_dssp CCBSSCE----------ESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred CCCCcch----------hce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE
Confidence 3322111 112 11222 56677777742 4589999988765322111 1111122233
Q ss_pred ecCCCCEEEEEeC-C-----CeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC-----cEEEeeCC
Q 011216 278 GDESGHLIYSGSD-D-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIR 346 (491)
Q Consensus 278 ~~~~~~~l~s~s~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-----~i~iwd~~ 346 (491)
.++.+++.|+. + ..+.+||.... ....+..+......-.++.+ ++++++.|+.++ .+.+||+.
T Consensus 147 --~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 220 (315)
T 4asc_A 147 --HMDLVYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSIT 220 (315)
T ss_dssp --ETTEEEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETT
T ss_pred --ECCEEEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECC
Confidence 24567777775 2 36888887521 11111111111111122223 567777777654 47778876
Q ss_pred C
Q 011216 347 K 347 (491)
Q Consensus 347 ~ 347 (491)
+
T Consensus 221 ~ 221 (315)
T 4asc_A 221 D 221 (315)
T ss_dssp T
T ss_pred C
Confidence 5
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.50 E-value=0.057 Score=49.35 Aligned_cols=252 Identities=13% Similarity=0.082 Sum_probs=121.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---CCEEEEEec
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 247 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~~~~~ 247 (491)
....++|.|+|+ |+++..++.|.+++ .+++ ..+..+.... ........|+++|+ +..|+++..
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~-----------~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGK-KLVASFDVAN-----------VGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEEC-SSCE-EEEEECCCCC-----------STTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCc-eEeeccceee-----------cCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 477899999998 45556679999987 3443 1111111000 00125788999997 555555443
Q ss_pred ----C----CeEEEEECCCC-------eee-EEEec-cCCCeEEEEEecCCCCEEEEEeC-------------CCeEEEE
Q 011216 248 ----D----DCIYVYDLEAN-------KLS-LRILA-HTSDVNTVCFGDESGHLIYSGSD-------------DNLCKVW 297 (491)
Q Consensus 248 ----d----g~i~vwd~~~~-------~~~-~~~~~-~~~~v~~i~~~~~~~~~l~s~s~-------------dg~i~iw 297 (491)
+ ..|..|+.... +.+ ..+.. .......++|. +++.++++.+. .|.|.-+
T Consensus 96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri 174 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDGMLYITTGDAADPRLAQDLSSLAGKILRV 174 (354)
T ss_dssp EECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTSCEEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred ccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCCcEEEEECCCCCCccccCCCCCCeEEEEE
Confidence 2 56888887654 111 11221 11134679997 67877766443 2455555
Q ss_pred eCccccCCC----cceeeeccccccEEEEEEcC-CCCEEEEeeCCCc---EEEeeCCCCCCccccccCcccceeeceeec
Q 011216 298 DRRCLNVKG----KPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQA---IKLWDIRKMSSNASCNLGFRSYEWDYRWMD 369 (491)
Q Consensus 298 d~~~~~~~~----~~~~~~~~~~~~i~~i~~sp-~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
+....-... .......++. ....++|+| +++++++-...+. |.+.. ... ..-|....-.
T Consensus 175 ~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~----------nyGwp~~~g~ 241 (354)
T 3a9g_A 175 DEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGG----------NYGWPLATGK 241 (354)
T ss_dssp CTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTC----------BCCTTTCCSC
T ss_pred cCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCC----------cCCCCcccCC
Confidence 543110000 0011112332 345789999 5665554332221 32221 110 0001000000
Q ss_pred CCCCcccccCCCCCeeEEE-cccceeeeeEEEEe--cCcc-cCCCcEEEEEecCCeEEEEECCCc-cEE--EEe-cCCCC
Q 011216 370 YPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHF--SPVY-STGQKYIYTGSHDSCVYVYDLVSG-EQV--AAL-KYHTS 441 (491)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~-s~~~~~l~~g~~dg~i~iwd~~~~-~~~--~~~-~~h~~ 441 (491)
.... ....++..+ ..+. ....+.+ ...| ..+|.++++.-..+.|...++... +.. ..+ .....
T Consensus 242 --~~~~----~~~~p~~~~~~~~~---ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~ 312 (354)
T 3a9g_A 242 --AGRG----EFVDPVIDTGSETW---APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFG 312 (354)
T ss_dssp --CCCT----TSCCCSEECTTCCC---CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSC
T ss_pred --CCCC----CCcCCEeecCCCCc---CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCC
Confidence 0000 001222222 1111 1112222 1111 136777777666788988888753 332 222 22245
Q ss_pred CeeeeEecCCCCeEEEEE
Q 011216 442 PVRDCSWHPSQPMLVSSS 459 (491)
Q Consensus 442 ~v~~~~~s~~~~~l~s~~ 459 (491)
.+.++++.|||.+.++..
T Consensus 313 rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 313 RLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECTTSCEEEEEC
T ss_pred CeeEEEECCCCcEEEEEe
Confidence 789999999997666653
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.49 E-value=0.058 Score=49.28 Aligned_cols=211 Identities=12% Similarity=0.041 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---ccCCceeEEEeEeCCC---CceEEEEec----C----
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYASM----S---- 190 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~l~~sp~---~~~l~~~~~----d---- 190 (491)
..-..++|.|||++++ +..+|.|++++ .++. ..... ..........|+|+|+ +..|.++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 3457899999998555 45669999997 3453 22111 1112235889999998 555554432 3
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-------------CCeEEEEECC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLE 257 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-------------dg~i~vwd~~ 257 (491)
..|..|+...+... .......... ++ ....| ....++|.|||.++++.+. .|.|.-++..
T Consensus 105 ~~v~r~~~~~~~~~-~~~~~~l~~~--~~--~~~~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 105 NRVIRGRLDGSTFK-LKEVKTLIDG--IP--GAYIH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp EEEEEEEECSSSCC-EEEEEEEEEE--EE--CCSSC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred eEEEEEEECCCCcC-cCccEEEEEc--CC--CCCCc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 56777777654100 0000000000 00 11123 2356899999986666432 2456666654
Q ss_pred CC--------eeeEEEeccCCCeEEEEEecCCCCEEEEEeCCC---eEEEEeCcc--------cc--C--CCcceeeecc
Q 011216 258 AN--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRC--------LN--V--KGKPAGVLMG 314 (491)
Q Consensus 258 ~~--------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg---~i~iwd~~~--------~~--~--~~~~~~~~~~ 314 (491)
.. .......++. ....++|.|.+++++++-.... .|.+...-. .. . ...++..+..
T Consensus 178 G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 178 GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 32 1111112443 3468999844676665543322 233322100 00 0 0112222311
Q ss_pred ccccEEEEEEc-------CCCCEEEEeeCCCcEEEeeCCC
Q 011216 315 HLEGITFIDSR-------GDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 315 ~~~~i~~i~~s-------p~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.......++|. .+|.++++.-..+.|...++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 22346677773 3566666655566677666653
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.47 E-value=0.061 Score=49.13 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCcEEEEEecCCeEEEEECCCccEEEE---ecCCCCCeeeeEecCCCCeEEEEE-CCCcE
Q 011216 409 GQKYIYTGSHDSCVYVYDLVSGEQVAA---LKYHTSPVRDCSWHPSQPMLVSSS-WDGDV 464 (491)
Q Consensus 409 ~~~~l~~g~~dg~i~iwd~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~-~Dg~i 464 (491)
+|.++++.-..+.|...++..++.+.. +......+.++++.|||.++++.. .+|.|
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEE
Confidence 577777777788888888876554332 222345789999999998666543 34443
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.36 E-value=0.088 Score=48.44 Aligned_cols=219 Identities=10% Similarity=0.109 Sum_probs=136.7
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
..|.|.|+..+........ ..-+.-.+|..+.++.-. ..++.|+|+++...+..+.- ..
T Consensus 48 ~~vvIiDl~~~~~~~rrpi-------------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e 106 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 106 (494)
T ss_dssp CEEEEEETTSTTSCEEEEC-------------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SS
T ss_pred CeEEEEECCCCCcceeccc-------------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CC
Confidence 4788888877654322111 223556788887666654 77899999999988877754 44
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc----ccEEEEEEcCCCCEEEEee-------CCCc
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----EGITFIDSRGDGRYLISNG-------KDQA 339 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~i~~i~~sp~~~~l~~~~-------~dg~ 339 (491)
+|.--.|- +.+.|+..+ +..|+-|++.. ...+...+..|. ..|.....+++.++++..+ ..|.
T Consensus 107 ~VvfWkWi--s~~~l~lVT-~taVyHWsi~~---~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 180 (494)
T 1bpo_A 107 DVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 180 (494)
T ss_dssp CCCEEEEE--ETTEEEEEC-SSEEEEEESSS---SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE
T ss_pred CceEEEec--CCCeEEEEc-CCeeEEecccC---CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce
Confidence 67777775 344555554 35899999863 335555554443 4577778899999987543 2467
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecC
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 419 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 419 (491)
+.+|..+. +.-+.++||...- ......- ......+++.+...
T Consensus 181 mQLYS~er-----------------------------------~~sQ~ieGhaa~F--~~~~~~g-~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 181 MQLYSVDR-----------------------------------KVSQPIEGHAASF--AQFKMEG-NAEESTLFCFAVRG 222 (494)
T ss_dssp EEEEESTT-----------------------------------CCEEEECCSEEEE--EEEECTT-CSSEEEEEEEEECS
T ss_pred EEEeeccc-----------------------------------cccchheeeeeee--EEEecCC-CCCCceEEEEEEec
Confidence 88888876 4556666665221 1111110 01112344444442
Q ss_pred ---CeEEEEECCCc---c-----EEEEec----CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 420 ---SCVYVYDLVSG---E-----QVAALK----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 420 ---g~i~iwd~~~~---~-----~~~~~~----~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
+.++|.++... . ....+. .-..-..++..++....+..-+.-|.|+++|+.++..
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence 78999998532 1 111111 1233456788888888888889999999999998753
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.34 E-value=0.028 Score=50.45 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=68.7
Q ss_pred EEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec----C-------CeEE
Q 011216 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----D-------DCIY 252 (491)
Q Consensus 184 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~----d-------g~i~ 252 (491)
++.|+ ..+.+||..+++... ...+... . .........+++.++.|+. + ..+.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~--------~------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 70 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQV--------P------KNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCS--------C------SSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEE
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCC--------C------ccceEEEEECCEEEEEcCcccCCCCCccccccceE
Confidence 34454 579999998887542 1111000 0 1111222347778888873 1 1378
Q ss_pred EEECCCCeeeEEEeccCCC--eEEEEEecCCCCEEEEEeCC--------CeEEEEeCccccCCCcceeeeccccccEEEE
Q 011216 253 VYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDD--------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 322 (491)
Q Consensus 253 vwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i 322 (491)
+||..+++... +..-..+ -.+++. .++.+++.|+.+ ..+.+||.... ....+..+......-..+
T Consensus 71 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 71 QFDHLDSEWLG-MPPLPSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEETTTTEEEE-CCCBSSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEE
T ss_pred EecCCCCeEEE-CCCCCcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeEE
Confidence 89998876532 2111111 112233 246677777632 35788887521 111111111111111222
Q ss_pred EEcCCCCEEEEeeC-C-----CcEEEeeCCC
Q 011216 323 DSRGDGRYLISNGK-D-----QAIKLWDIRK 347 (491)
Q Consensus 323 ~~sp~~~~l~~~~~-d-----g~i~iwd~~~ 347 (491)
. -++++++.|+. + ..+.+||+.+
T Consensus 146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 174 (315)
T 4asc_A 146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKK 174 (315)
T ss_dssp E--ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred E--ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence 2 25667777765 2 3577777765
No 322
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.34 E-value=0.012 Score=53.93 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=97.2
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccC-Cce-eEEEeEeCCCCceEEEEecCCeEEEEECCCCcccccc-c
Q 011216 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRW-TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA-N 208 (491)
Q Consensus 132 ~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~-~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~ 208 (491)
.+.+|..++.+- ++.||.-++..+...+ .+.... ... .|..+..+|+|++|+..+ +..|.|..+..+...... .
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk-~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYH-SLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCE-EEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcce-EEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 345666677663 5788888887543222 222221 122 577899999999999886 568999888743321110 0
Q ss_pred eeccccccccccCC-CCCceecEEEEEEcC---CCCEEEEEecCCeEEEEECCCCe--eeEEEe---------ccCCCeE
Q 011216 209 VTEIHDGLDFSAAD-DGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANK--LSLRIL---------AHTSDVN 273 (491)
Q Consensus 209 ~~~~~~~~~~~~~~-~~~h~~~v~~i~~s~---~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---------~~~~~v~ 273 (491)
.........+.... ......+|..+.|+| .+..|++-..|+.|++||+.... +. .+. .....|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 00000000011100 111345899999999 45689999999999999997522 11 221 2236789
Q ss_pred EEEEecCCCCEEEEEe--CCCeEEEE
Q 011216 274 TVCFGDESGHLIYSGS--DDNLCKVW 297 (491)
Q Consensus 274 ~i~~~~~~~~~l~s~s--~dg~i~iw 297 (491)
+++|. .++-.|+..+ ..|.|+-.
T Consensus 184 S~~Fg-~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 184 DLEFS-KDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEC-TTSSCEEEEECTTSCEEEEE
T ss_pred EEEEc-CCCcEEEEEecCCCCCEEEE
Confidence 99997 5777677755 77877653
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.33 E-value=0.017 Score=51.81 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=74.0
Q ss_pred CCCceEEEEecC----CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec----C--
Q 011216 179 PDQRHLVYASMS----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----D-- 248 (491)
Q Consensus 179 p~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~----d-- 248 (491)
-++..++.|+.+ ..+.+||..+.+.......+.. ..+|. .+.+ ++..++.|+. +
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~----------r~~~~----~~~~--~~~lyv~GG~~~~~~~~ 86 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP----------RSGLA----GCVV--GGLLYAVGGRNNSPDGN 86 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC----------CBSCE----EEEE--TTEEEEECCEEEETTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc----------cccce----EEEE--CCEEEEECCCcCCCCCC
Confidence 356667777642 3688999888776544322211 11221 1222 5667777765 2
Q ss_pred ---CeEEEEECCCCeeeEEEeccC-CCeEEEEEecCCCCEEEEEeCC-----CeEEEEeCccccCCCcceeeeccccccE
Q 011216 249 ---DCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGI 319 (491)
Q Consensus 249 ---g~i~vwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i 319 (491)
..+.+||+.+.+....-.... ..-.+++. .++.+++.|+.+ ..+.+||.... ....+..+......-
T Consensus 87 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~ 162 (308)
T 1zgk_A 87 TDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGV 162 (308)
T ss_dssp EECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSC
T ss_pred eecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccce
Confidence 458899998876533211111 11122232 246677777643 35778887521 111111111111112
Q ss_pred EEEEEcCCCCEEEEeeCC-----CcEEEeeCCC
Q 011216 320 TFIDSRGDGRYLISNGKD-----QAIKLWDIRK 347 (491)
Q Consensus 320 ~~i~~sp~~~~l~~~~~d-----g~i~iwd~~~ 347 (491)
..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 163 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 163 GVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 22223 56677777654 3477777765
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.27 E-value=0.088 Score=46.46 Aligned_cols=219 Identities=11% Similarity=0.108 Sum_probs=137.1
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCC
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 270 (491)
.+|.|.|+..+........ ..-+.-.+|..+.+|.-. ...+.++|+++.+.+..+.- ..
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi-------------------~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e 107 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TD 107 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC-------------------CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SS
T ss_pred CEEEEEECCCCCCcccccc-------------------ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CC
Confidence 3788888887654322111 222455688888777665 67899999999988877744 45
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeecccc----ccEEEEEEcCCCCEEEEeeC-------CCc
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL----EGITFIDSRGDGRYLISNGK-------DQA 339 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~i~~i~~sp~~~~l~~~~~-------dg~ 339 (491)
+|.--.|- +.+.|+..+. ..|+-|++.. ...+.+.+..|. ..|.....+++.++++..+- .|.
T Consensus 108 ~VvfWkWi--s~~~L~lVT~-taVyHWs~~~---~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 108 DVTFWKWI--SLNTVALVTD-NAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp CEEEEEEC--SSSEEEEEES-SEEEEEESST---TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred ccEEEEec--CCCeEEEEcC-CcEEEEcccC---CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCcccee
Confidence 77778885 4455655554 4899999863 335555554443 45777788999998875442 367
Q ss_pred EEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec-
Q 011216 340 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH- 418 (491)
Q Consensus 340 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~- 418 (491)
+.+|..+. +.-+.++||...- ...... .......+++.+..
T Consensus 182 mQLYS~er-----------------------------------~~sQ~ieGhaa~F--~~~~~~-g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 182 MQLYSVDR-----------------------------------KVSQPIEGHAASF--AQFKME-GNAEESTLFCFAVRG 223 (365)
T ss_dssp EEEEETTT-----------------------------------TEEEEECCSEEEE--EEECCT-TCSSCEEEEEEEEEE
T ss_pred EEEEeecc-----------------------------------cccceeeeeeeee--EEEecC-CCCCCceEEEEEEec
Confidence 88888876 5556667775221 111000 01111234444433
Q ss_pred --CCeEEEEECCCc---cE-----EEE-ec---CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 419 --DSCVYVYDLVSG---EQ-----VAA-LK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 419 --dg~i~iwd~~~~---~~-----~~~-~~---~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+.++|.++... .+ ... +- .-..-..++..++....+..-+.-|.|++||+.++..
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~ 293 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 293 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcE
Confidence 258899988432 11 111 11 1233456778888888888889999999999998753
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.26 E-value=0.04 Score=50.06 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=105.2
Q ss_pred cEEEEEEcCCCCEEEEE------------ecCCeEEEEECCCC--ee-eEEEec-----cCCCeEEEEEecC-CCC--EE
Q 011216 229 GIFSLKFSTDGRELVAG------------SSDDCIYVYDLEAN--KL-SLRILA-----HTSDVNTVCFGDE-SGH--LI 285 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~------------~~dg~i~vwd~~~~--~~-~~~~~~-----~~~~v~~i~~~~~-~~~--~l 285 (491)
...++...|+|..++++ ..+|.|.++|..+. +. ...+.+ .......+.+.+. ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778887544443 16899999999742 21 112222 2246677877532 343 44
Q ss_pred EEEeC--CCeEEEEeCccccCCCcceeeeccc-cccEEEEEEcCCCCEEEEeeC---C--------------CcEEEeeC
Q 011216 286 YSGSD--DNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGK---D--------------QAIKLWDI 345 (491)
Q Consensus 286 ~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~~-~~~i~~i~~sp~~~~l~~~~~---d--------------g~i~iwd~ 345 (491)
++-.. +..|.+|++.........+..+.+. ....+.+.+.++|.+.++... | |.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 5688888876221111222233322 234678888888887766531 1 11111111
Q ss_pred CCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEe-cCCeEEE
Q 011216 346 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYV 424 (491)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~i 424 (491)
. .+..+ ..-......++||||++.|+++. ..+.|+.
T Consensus 211 ~-------------------------------------~~~~~------~~~l~~pNGia~spDg~~lYvadt~~~~I~~ 247 (355)
T 3sre_A 211 N-------------------------------------DVRVV------AEGFDFANGINISPDGKYVYIAELLAHKIHV 247 (355)
T ss_dssp T-------------------------------------CCEEE------EEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred C-------------------------------------eEEEe------ecCCcccCcceECCCCCEEEEEeCCCCeEEE
Confidence 0 01110 01111223457888998887775 4688999
Q ss_pred EECCC-ccE--EEEecCCCCCeeeeEecC-CCCeEEEEECCC-cEEEe
Q 011216 425 YDLVS-GEQ--VAALKYHTSPVRDCSWHP-SQPMLVSSSWDG-DVVRW 467 (491)
Q Consensus 425 wd~~~-~~~--~~~~~~h~~~v~~~~~s~-~~~~l~s~~~Dg-~i~iw 467 (491)
|++.. ++. ...+. ..+..-.+++.+ +|.+.+++..+| .|..|
T Consensus 248 ~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 248 YEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp EEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred EEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence 99853 332 22332 245677899999 598887776553 34334
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.16 E-value=0.096 Score=46.99 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=90.1
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEec----CC-------eEEEEECCCCccccc
Q 011216 138 LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM----SP-------IVHIVDVGSGTMESL 206 (491)
Q Consensus 138 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~ 206 (491)
+++.|+. .+..||..++.-..........+ ....+...++..++.|+. ++ .+.++|..+.+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r--~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPR--NHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCS--SEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCc--cceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC
Confidence 3444443 48899998874333211111111 112223457788888873 11 277888887766544
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-------CeEEEEECCCCeeeEEEeccCC-CeEEEEEe
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------DCIYVYDLEANKLSLRILAHTS-DVNTVCFG 278 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~-~v~~i~~~ 278 (491)
...+.. ...|. .+.+ +++.++.|+.+ ..+.+||+.+.+....-..... .-.+++.
T Consensus 94 ~~~p~~----------r~~~~----~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 156 (318)
T 2woz_A 94 PPLPSA----------RCLFG----LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS- 156 (318)
T ss_dssp SCBSSC----------BCSCE----EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred CCCCcc----------ccccc----eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence 332211 11221 1222 56777777754 3588999988765432111100 0112222
Q ss_pred cCCCCEEEEEeC------CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC-----cEEEeeCCC
Q 011216 279 DESGHLIYSGSD------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg-----~i~iwd~~~ 347 (491)
.++.+++.|+. -..+.+||+... ....+..+.........+.+ ++++++.|+.++ .+.+||+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 34667777764 235888887621 11111111111111122222 567777776542 466788765
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.07 E-value=0.038 Score=50.63 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=77.2
Q ss_pred CCCEEEEEEC-CCeEEEEECCC-CeEEEEEeecc-CCceeEEEeEeCCCCceEEEEec-C---------CeEEEEECCCC
Q 011216 135 DGSLFVAGFQ-ASQIRIYDVER-GWKIQKDILAK-SLRWTVTDTSLSPDQRHLVYASM-S---------PIVHIVDVGSG 201 (491)
Q Consensus 135 dg~~l~~~~~-dg~i~vw~~~~-~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~~~~~-d---------g~i~iwd~~~~ 201 (491)
++++++.|+. ...+.+||..+ ........... ..+..-..+.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 6666677664 35788999863 11222222212 11111222222 5777777765 2 46889999887
Q ss_pred ccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC---------------------------------
Q 011216 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------------------------------- 248 (491)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d--------------------------------- 248 (491)
+........ +....+| .++. .+++.++.|+.+
T Consensus 97 ~W~~~~~~~---------p~~r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 97 SWVKLMSHA---------PMGMAGH----VTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp EEEECSCCC---------SSCCSSE----EEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred cEEECCCCC---------Ccccccc----eEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 765444322 0111112 2222 467777888754
Q ss_pred ------CeEEEEECCCCeeeEEEecc-CCCe-EEEEEecCCCCEEEEEeC------CCeEEEEeC
Q 011216 249 ------DCIYVYDLEANKLSLRILAH-TSDV-NTVCFGDESGHLIYSGSD------DNLCKVWDR 299 (491)
Q Consensus 249 ------g~i~vwd~~~~~~~~~~~~~-~~~v-~~i~~~~~~~~~l~s~s~------dg~i~iwd~ 299 (491)
..+.+||+.+.+....-... ...- .+++.. ++.+++.|+. ...+.+||+
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence 57999999887754332211 1111 334432 4667777663 235666776
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.00 E-value=0.079 Score=47.54 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=51.6
Q ss_pred cCCCCEEEEEec----CC-------eEEEEECCCCeeeEE--EeccCCCeEEEEEecCCCCEEEEEeCC-------CeEE
Q 011216 236 STDGRELVAGSS----DD-------CIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDD-------NLCK 295 (491)
Q Consensus 236 s~~~~~l~~~~~----dg-------~i~vwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~~l~s~s~d-------g~i~ 295 (491)
..++..++.|+. ++ .+.+||..+.+.... +...... .+++.. ++.+++.|+.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 456778888873 12 278889888765332 1111111 223332 46677777754 2477
Q ss_pred EEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCC------CcEEEeeCCC
Q 011216 296 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRK 347 (491)
Q Consensus 296 iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d------g~i~iwd~~~ 347 (491)
+||.... ....+..+......-..+. .++++++.|+.+ ..+.+||+.+
T Consensus 131 ~yd~~~~--~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 131 CYDPVAA--KWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp EEETTTT--EEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred EEeCCCC--CEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 7777521 1111111111111111222 356677777642 3477888765
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.92 E-value=0.13 Score=48.98 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=60.2
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEeeccCCc----------------------eeE--EEeEeC---CCCceEEEEec-C
Q 011216 139 FVAGFQASQIRIYDVERGWKIQKDILAKSLR----------------------WTV--TDTSLS---PDQRHLVYASM-S 190 (491)
Q Consensus 139 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~----------------------~~v--~~l~~s---p~~~~l~~~~~-d 190 (491)
+.+|+..|.|+|+-+.++..+..+....... +.. ..+.+. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6688899999999999987776653322110 000 112222 26788888764 4
Q ss_pred CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEc--CCCCEEEEEec
Q 011216 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSS 247 (491)
Q Consensus 191 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s--~~~~~l~~~~~ 247 (491)
..|...+++.-++..+..++... .+..++|- |+..+++++++
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~---------------~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQ---------------AIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCS---------------CEEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCc---------------CcccccccccCCccEEEecce
Confidence 57888888887776666555433 56677775 56777777764
No 330
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.90 E-value=0.21 Score=44.32 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=94.5
Q ss_pred cCCCCEEEEEE--CCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecC--------------CeEEEE
Q 011216 133 SADGSLFVAGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------PIVHIV 196 (491)
Q Consensus 133 s~dg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~d--------------g~i~iw 196 (491)
+++|.+|.... .++.|...+.+... ..++.. -.+--+++++.+|+.+... ..|+..
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~-------~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN-------DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE-------EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC-------CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 45677777654 35667666665432 222211 1123457899998888653 367777
Q ss_pred ECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe----cCCeEEEEECCCCeeeEEEeccCCCe
Q 011216 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----SDDCIYVYDLEANKLSLRILAHTSDV 272 (491)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~v 272 (491)
+++.++...+.. -.+..|+++++.|+... ....|+..++.... ...+..+..
T Consensus 94 ~~dg~~~~~l~~---------------------~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~-- 149 (302)
T 3s25_A 94 KRNGHGSTVLDP---------------------DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL-- 149 (302)
T ss_dssp ETTSCCCEEEEC---------------------SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC--
T ss_pred eCCCCcceEeec---------------------CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc--
Confidence 777765433221 11236777888888776 34567777776443 344444432
Q ss_pred EEEEEecCCCCEEEEEeC-CCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCC--cEEEeeCCC
Q 011216 273 NTVCFGDESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--AIKLWDIRK 347 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg--~i~iwd~~~ 347 (491)
..++ ++++.|+-.+. ...|.+-++. +.....+.. +... ..++|++.+|+-....+ .|..-++..
T Consensus 150 --~~~~-~~g~~iy~t~~g~~~Iy~~~l~-----g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 --FTCN-TSDRYFYYNNPKNGQLYRYDTA-----SQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp --CCSE-EETTEEEEECTTTCCEEEEETT-----TTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSS
T ss_pred --eEee-EECCEEEEEeCCCceEEEEECC-----CCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCC
Confidence 3444 34555554443 5678777774 222223321 2222 33568888887665433 455555554
No 331
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.81 E-value=0.21 Score=44.37 Aligned_cols=134 Identities=9% Similarity=0.122 Sum_probs=73.4
Q ss_pred CCCCceEEEEe--cCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecC-------
Q 011216 178 SPDQRHLVYAS--MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------- 248 (491)
Q Consensus 178 sp~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~d------- 248 (491)
++++..|.... .++.|...+.+......+.. -.+--++++|.+|+.+...
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---------------------~~~~~i~~~g~~Iyy~~~~~~~~~~~ 80 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---------------------DTAMYINADKNYVYYVRNNNQKITSQ 80 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---------------------EEEEEEEECSSEEEEEEECC------
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---------------------CceeeEEEcCCEEEEEECCCCccccc
Confidence 45666666654 24566666665544322221 1123457788888877653
Q ss_pred -------CeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEe--CCC--eEEEEeCccccCCCcceeeeccccc
Q 011216 249 -------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDN--LCKVWDRRCLNVKGKPAGVLMGHLE 317 (491)
Q Consensus 249 -------g~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 317 (491)
..|+..++...+.. .+.. .. +..|+ ++++.|+-.. .++ .|..-++. +.....+..+..
T Consensus 81 ~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~--~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~d-----Gs~~~~lt~~~~ 149 (302)
T 3s25_A 81 TFFSYDRNSLCRIKRNGHGST-VLDP--DP--CIYAS-LIGNYIYYLHYDTQTATSLYRIRID-----GEEKKKIKNHYL 149 (302)
T ss_dssp CCSSCCSEEEEEEETTSCCCE-EEEC--SC--EEEEE-EETTEEEEEEESSSSCEEEEEEETT-----SCCCEEEESSCC
T ss_pred ceeccCCCeEEEEeCCCCcce-Eeec--CC--ccEEE-EeCCEEEEEeecCCCCceEEEEECC-----CCCeEEEeCCCc
Confidence 36788888776532 2322 22 22555 3566666554 344 44444543 333444443322
Q ss_pred cEEEEEEcCCCCEEEEeeC-CCcEEEeeCCC
Q 011216 318 GITFIDSRGDGRYLISNGK-DQAIKLWDIRK 347 (491)
Q Consensus 318 ~i~~i~~sp~~~~l~~~~~-dg~i~iwd~~~ 347 (491)
.+++++++.|+-.+. ...|.+.++..
T Consensus 150 ----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 150 ----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp ----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred ----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 456778888775554 56777777765
No 332
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.80 E-value=0.022 Score=52.25 Aligned_cols=123 Identities=15% Similarity=0.245 Sum_probs=78.2
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCe------------EEEEEeecc---CCceeEEEeEeCCCC---ceEEEE
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW------------KIQKDILAK---SLRWTVTDTSLSPDQ---RHLVYA 187 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~---~~~~~v~~l~~sp~~---~~l~~~ 187 (491)
.|..+..||+|++||..+. ..|.|-.+..+. ......... ....+|..+.|+|-+ ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 6778999999999998864 478888877331 011111110 124579999999954 589999
Q ss_pred ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe--cCCeEEEEE
Q 011216 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYD 255 (491)
Q Consensus 188 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~--~dg~i~vwd 255 (491)
..|+.|++||+........ .+...... |.. ......|.+++|.+++-.|.+.+ ..|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~--fg~---d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNS--FGL---DARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSE--EES---CSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccc--cCC---CcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999999999986332222 11111111 111 11224789999999877666644 778777543
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.79 E-value=0.072 Score=48.73 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=48.5
Q ss_pred CCceEEEEecC-CeEEEEECCC--CccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-C-------
Q 011216 180 DQRHLVYASMS-PIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D------- 248 (491)
Q Consensus 180 ~~~~l~~~~~d-g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-d------- 248 (491)
+++.++.|+.+ ..+.++|..+ .+.......+. ....+|. .+.+ +++.++.|+. +
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~---------~~R~~~~----~~~~--~~~lyv~GG~~~~~~~~~~ 83 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG---------GPRDQAT----SAFI--DGNLYVFGGIGKNSEGLTQ 83 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT---------CCCBSCE----EEEE--TTEEEEECCEEECTTSCEE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC---------CcCccce----EEEE--CCEEEEEcCCCCCCCccce
Confidence 56666666543 4688888864 44333322110 0111221 2222 5677777765 2
Q ss_pred --CeEEEEECCCCeeeEEEecc-CCCe-EEEEEecCCCCEEEEEeCC
Q 011216 249 --DCIYVYDLEANKLSLRILAH-TSDV-NTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 249 --g~i~vwd~~~~~~~~~~~~~-~~~v-~~i~~~~~~~~~l~s~s~d 291 (491)
..+.+||+.+.+....-... .... .+++. .++.+++.|+.+
T Consensus 84 ~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 84 VFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp ECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred eeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 46899999887654322111 1111 22222 356788888754
No 334
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.77 E-value=0.39 Score=45.47 Aligned_cols=111 Identities=16% Similarity=0.247 Sum_probs=61.2
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---CCEEEEEec
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSS 247 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~~~~~ 247 (491)
....|+|.|+|+++++-...+.|.+++..++....+..+..... .......+..|+|+|+ +..|.++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~--------~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN--------DADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC--------CTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccc--------ccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 46789999999876665444578888766555432222111100 0001236789999995 555555442
Q ss_pred -------------CCeEEEEECCCC-------eeeEE-Eec-cCCCeEEEEEecCCCCEEEEEeC
Q 011216 248 -------------DDCIYVYDLEAN-------KLSLR-ILA-HTSDVNTVCFGDESGHLIYSGSD 290 (491)
Q Consensus 248 -------------dg~i~vwd~~~~-------~~~~~-~~~-~~~~v~~i~~~~~~~~~l~s~s~ 290 (491)
...|.-++...+ +.+.. +.. .......|+|. +++.++++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~Gd 163 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIGD 163 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEECC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEECC
Confidence 235666665432 11111 211 12246889997 77887776553
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.31 Score=43.80 Aligned_cols=147 Identities=12% Similarity=0.107 Sum_probs=80.0
Q ss_pred ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEE-ecCCeEEEEECCCCe
Q 011216 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANK 260 (491)
Q Consensus 182 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~-~~dg~i~vwd~~~~~ 260 (491)
..+++++.||.|.-+|..+|+.............+... +. ....++..++.. +.||.|+.++..+|.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~-----~~-------~~~~~~~~~vv~p~~dG~l~a~~~~~G~ 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQ-----EP-------SRLETYETLIIEPFGDGNIYYFNAHQGL 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECC-----CS-------CTTTSSEEEEECCSTTTEEEEEETTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEec-----CC-------ccccCCcEEEEEECCCCEEEEEECCCCc
Confidence 46788999999999999999876665443101000000 00 000133333333 579999999998885
Q ss_pred eeEEEec----cCCCeEE---EEEec----CCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccc--c-----EEEE
Q 011216 261 LSLRILA----HTSDVNT---VCFGD----ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--G-----ITFI 322 (491)
Q Consensus 261 ~~~~~~~----~~~~v~~---i~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~-----i~~i 322 (491)
....+.. ...++.. ....+ ..+..+++|+.+|.+...|++ +++.+..+..... . ..|.
T Consensus 79 ~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~----tG~~~W~~~~~~~~~~~~~~~e~~~ 154 (339)
T 2be1_A 79 QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML----NGEIISAFGPGSKNGYFGSQSVDCS 154 (339)
T ss_dssp EEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT----TCCEEEEESTTCBCC----------
T ss_pred EEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC----CCcEEEEEecCCCcccccccccccc
Confidence 5433321 1222221 00000 145688999999999999998 7777776653211 0 0011
Q ss_pred EEc-----CCCCEEEEeeCCCcEEEee
Q 011216 323 DSR-----GDGRYLISNGKDQAIKLWD 344 (491)
Q Consensus 323 ~~s-----p~~~~l~~~~~dg~i~iwd 344 (491)
... ..+..++.+..+..+.+.+
T Consensus 155 ~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 155 PEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp ----------CCEEEEEEEEEECEECC
T ss_pred cccccccccCCCeEEEecceEEEEEEC
Confidence 110 1234677777666666666
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.32 E-value=0.58 Score=42.21 Aligned_cols=254 Identities=15% Similarity=0.111 Sum_probs=122.3
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC---CCEEEEE--
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAG-- 245 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~---~~~l~~~-- 245 (491)
....|+|.|+|+++++--..|.|++++..+++...+..+.... .........|+++|+ +..|.+.
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~----------~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVS----------PSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC----------CBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCcee----------ecCCCCceeeEeccccccCCEEEEEEe
Confidence 4678999999987666554899999987655542221111100 011226889999995 3445443
Q ss_pred -ecCCeEEEEECCCC----------eeeE-EEec-cCCCeEEEEEecCCCCEEEEEeC-------------CCeEEEEeC
Q 011216 246 -SSDDCIYVYDLEAN----------KLSL-RILA-HTSDVNTVCFGDESGHLIYSGSD-------------DNLCKVWDR 299 (491)
Q Consensus 246 -~~dg~i~vwd~~~~----------~~~~-~~~~-~~~~v~~i~~~~~~~~~l~s~s~-------------dg~i~iwd~ 299 (491)
..++.|.-|.+..+ +.+. .+.. ....-..|.|. +++.++++.+. .|.|.-.+.
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~ 181 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP 181 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence 23456666766541 1111 1211 11134579997 77887777542 244444454
Q ss_pred ccccCCCc----ceeeeccccccEEEEEEcCCCCEEEEee-CCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCc
Q 011216 300 RCLNVKGK----PAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 374 (491)
Q Consensus 300 ~~~~~~~~----~~~~~~~~~~~i~~i~~sp~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (491)
...-.... ...--.+|.. ...++|+|+|.++++-. .|+.=.|--+.... ..-|....- ...
T Consensus 182 dG~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~----------nyGwP~~~g--~~~- 247 (347)
T 3das_A 182 DGEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGD----------NYGWPEAEG--KGG- 247 (347)
T ss_dssp TSSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTC----------BCCTTTCCS--SCC-
T ss_pred CCCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCC----------EecCCcccC--CCC-
Confidence 31100000 1111224433 45789999877655432 22211222222111 111111000 000
Q ss_pred ccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEecCCeEEEEECCCccE----EEEecCCCCCeeeeEecC
Q 011216 375 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHP 450 (491)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~~~~s~ 450 (491)
......++..+..+.. ....+.|. +|.++...-..+.|....+..... ...+.+..+.+.+|+..|
T Consensus 248 ---~~~~~~P~~~~~~~~~--ap~G~~~~-----~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p 317 (347)
T 3das_A 248 ---GSGFHDPVAQWSTDEA--SPSGIAYA-----EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG 317 (347)
T ss_dssp ---CTTCCCCSEEECTTTC--CEEEEEEE-----TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE
T ss_pred ---CccccCCcEecCCCCC--CCcceEEE-----cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC
Confidence 0011233444432210 11122221 355555555556676666654432 233444456789999999
Q ss_pred CCCeEEEEE
Q 011216 451 SQPMLVSSS 459 (491)
Q Consensus 451 ~~~~l~s~~ 459 (491)
||.++++.+
T Consensus 318 DG~lyv~td 326 (347)
T 3das_A 318 GDKLWLVTS 326 (347)
T ss_dssp TTEEEEEEC
T ss_pred CCcEEEEEc
Confidence 998666554
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.29 E-value=0.25 Score=44.60 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=84.2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEee---ccCCceeEEEeEeCCC---CceEEEE-e--cCCeEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSPD---QRHLVYA-S--MSPIVH 194 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~v~~l~~sp~---~~~l~~~-~--~dg~i~ 194 (491)
-..-..|+|.|||+++++--..|.|++++..++........ ..........|+|+|+ +..|.+. + .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 44568999999999777765589999998765533211111 1122346889999996 3444432 2 345666
Q ss_pred EEECCCCccc--cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEec-------------CCeEEEEECCCC
Q 011216 195 IVDVGSGTME--SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------DDCIYVYDLEAN 259 (491)
Q Consensus 195 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~-------------dg~i~vwd~~~~ 259 (491)
-|.+..+... ...........+ + ....| ....|+|.|||.++++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~--p--~~~~H--~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGI--P--KGVIH--NGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEE--C--CCSSC--CCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred EEEeCCCCcccccCCCcEEEEEcC--C--CCCCc--cCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 6666553210 110111111111 0 11234 3457999999987776442 355555555432
Q ss_pred --------eeeEEEeccCCCeEEEEEecCCCCEEEEE
Q 011216 260 --------KLSLRILAHTSDVNTVCFGDESGHLIYSG 288 (491)
Q Consensus 260 --------~~~~~~~~~~~~v~~i~~~~~~~~~l~s~ 288 (491)
....--.+|. ....++|. ++++++++-
T Consensus 185 ip~~nPf~~~~i~a~G~R-Np~Gla~d-p~G~L~~~d 219 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHR-NVQGLAWD-DKQRLFASE 219 (347)
T ss_dssp BCTTCSSTTCCEEEBCCS-BCCEEEEC-TTCCEEEEE
T ss_pred ccCCCCCCCCeEEeeCCC-CcceEEEC-CCCCEEEEe
Confidence 1111112443 35688997 467665543
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.25 E-value=0.28 Score=52.39 Aligned_cols=220 Identities=10% Similarity=0.094 Sum_probs=127.3
Q ss_pred CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC
Q 011216 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (491)
Q Consensus 190 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 269 (491)
..+|.|.|+..+.......+ ..-+.-.+|..+.++.-. ..++.|+|+++...+..+.- .
T Consensus 47 ~~~vvIidl~~~~~~~rrpi-------------------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~ 105 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI-------------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-T 105 (1630)
T ss_pred CceEEEEECCCCCCcccccc-------------------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-C
Confidence 34788888877654322221 223455677777666554 67899999999877766643 4
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccc----cccEEEEEEcCCCCEEEEee-------CCC
Q 011216 270 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH----LEGITFIDSRGDGRYLISNG-------KDQ 338 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~i~~i~~sp~~~~l~~~~-------~dg 338 (491)
.+|.--.|- +.+.|+..+ +..|..|++.. ...++..+..| ...|..-..+++.++++..| ..|
T Consensus 106 e~VvfWkWi--s~~~l~lVT-~~aVyHW~~~~---~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G 179 (1630)
T 1xi4_A 106 DDVTFWKWI--SLNTVALVT-DNAVYHWSMEG---ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (1630)
T ss_pred CCceEEEec--CCCeeEEEc-CCeEEEeccCC---CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence 567777785 344555444 34799999963 33444444444 35677777889999887543 347
Q ss_pred cEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEEecCcccCCCcEEEEEec
Q 011216 339 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 418 (491)
Q Consensus 339 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 418 (491)
.+.+|..... .-+.+.||...-...... ...+...+++.+..
T Consensus 180 ~mQLyS~er~-----------------------------------~sQ~iegha~~F~~~~~~---~~~~~~~l~~f~~~ 221 (1630)
T 1xi4_A 180 AMQLYSVDRK-----------------------------------VSQPIEGHAASFAQFKME---GNAEESTLFCFAVR 221 (1630)
T ss_pred eeeeeecccc-----------------------------------cchhhhHhHhhhheeccC---CCCCCceEEEEEEe
Confidence 7888887652 223334443110000000 00111223333322
Q ss_pred ---CCeEEEEECCCc---cEEE------Eec---CCCCCeeeeEecCCCCeEEEEECCCcEEEecCCCCCC
Q 011216 419 ---DSCVYVYDLVSG---EQVA------ALK---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 474 (491)
Q Consensus 419 ---dg~i~iwd~~~~---~~~~------~~~---~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~~~~ 474 (491)
.+.++|.++... .+.. .+- .-..-..++..++....+..-+.-|.|+++|+.++..
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchh
Confidence 267888887432 1111 010 1122345677777777888888999999999998754
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.24 E-value=0.3 Score=40.48 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=83.0
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.+.+++|+|+|.+.++ .+|.+.-.+..+........... .-+ ..+.. .-.++.|.|+|.+.++ .||.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t-~IG-------~~Gw~-~F~a~~fD~~G~LYav--~dG~ 108 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK-KIG-------NGGWN-QFQFLFFDPNGYLYAV--SKDK 108 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE-EEE-------CSCGG-GCSEEEECTTSCEEEE--ETTE
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc-Eec-------ccccc-cceEEEECCCCCEEEe--CCCE
Confidence 5679999998886555 67776666654433222221100 000 00001 1367899999986666 5699
Q ss_pred EEEEECCCCeee------EEE-eccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC-c-ceeee-ccccccEE
Q 011216 251 IYVYDLEANKLS------LRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-K-PAGVL-MGHLEGIT 320 (491)
Q Consensus 251 i~vwd~~~~~~~------~~~-~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~-~~~~~-~~~~~~i~ 320 (491)
|+-++..+...- ..+ ..--..+..|.+. +++.+.+.. |+.++-+......... . ....+ ...-...+
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 988876432211 111 1112467888886 788777666 7775433221000000 0 01111 12233455
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeeCC
Q 011216 321 FIDSRGDGRYLISNGKDQAIKLWDIR 346 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~dg~i~iwd~~ 346 (491)
.+.|.+++.+.++. ++ ++|...
T Consensus 186 ~l~f~~~G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp EEEECTTSCEEEEE--TT--EEEEES
T ss_pred EEEECCCCcEEEEe--CC--eEEecC
Confidence 67799999877766 66 455443
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.20 E-value=1.3 Score=45.10 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=110.0
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcc
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 203 (491)
...|.++.-..+| .|..|+.+| +..||..++.... ........|.++.. .++ .|..++.+ -+..++..+++.
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~ 133 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ---PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL 133 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC---CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC---cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE
Confidence 4568998888776 466666665 7899988763211 11111224666654 345 45556655 688888876654
Q ss_pred ccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec-----cCCCeEEEEEe
Q 011216 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFG 278 (491)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~i~~~ 278 (491)
...... ..++ ....|.++....+|.+. .|+..| |..++..+++....... ....|.++...
T Consensus 134 ~~~~~~---~~~l---------~~~~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 199 (758)
T 3ott_A 134 TSFDTR---RNGL---------PNNTIYSIIRTKDNQIY-VGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED 199 (758)
T ss_dssp EEECHH---HHCC---------SCSCEEEEEECTTCCEE-EEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred EEeccC---CCCc---------CCCeEEEEEEcCCCCEE-EEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence 322110 0000 01258888888888744 455554 88889877654321111 12247888774
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.++..|..|+. +-+..+|.. ..............|.++...++|.+.+ |+.+ -+.+++..+
T Consensus 200 -~~~~~lWigt~-~Gl~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~ 260 (758)
T 3ott_A 200 -TTRQCVWIGTE-GYLFQYFPS----TGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDT 260 (758)
T ss_dssp -TTTTEEEEEEE-EEEEEEETT----TTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTT
T ss_pred -CCCCEEEEEEC-CCCeEEcCC----CCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCC
Confidence 55555555554 457778864 2221111111234588888888877555 4444 578888765
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.13 E-value=0.34 Score=40.19 Aligned_cols=149 Identities=13% Similarity=0.007 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-----EEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCC
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK-----IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~ 200 (491)
.+.+++|+|+|.+.++ .+|.+.-.+..++.. ....+-..+-.. -.++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5669999999997777 677766655533100 011111111111 367889999987776 569888777533
Q ss_pred Cccccccce-eccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe------eeEEEe-ccCCCe
Q 011216 201 GTMESLANV-TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK------LSLRIL-AHTSDV 272 (491)
Q Consensus 201 ~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~-~~~~~v 272 (491)
......... ..... +--..+..|.|.|+|.+.++. |+.++-+...+.. ....+. ..-..-
T Consensus 117 ~~~~~Wl~~a~~vg~----------~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~y 184 (236)
T 1tl2_A 117 SDTDNWIARATEVGS----------GGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTF 184 (236)
T ss_dssp STTCCHHHHSEEEEC----------SSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGE
T ss_pred CCCCceeccccEecc----------CCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceE
Confidence 222111110 00000 000257899999999866555 8876544333221 111111 222234
Q ss_pred EEEEEecCCCCEEEEEeCCCeE
Q 011216 273 NTVCFGDESGHLIYSGSDDNLC 294 (491)
Q Consensus 273 ~~i~~~~~~~~~l~s~s~dg~i 294 (491)
+.+.|. +++.+.++. ++.+
T Consensus 185 r~l~f~-~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 185 KFLFFS-SVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEEEC-TTSCEEEEE--TTEE
T ss_pred EEEEEC-CCCcEEEEe--CCeE
Confidence 446675 777766655 6643
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.00 E-value=0.49 Score=47.64 Aligned_cols=198 Identities=16% Similarity=0.097 Sum_probs=104.3
Q ss_pred CCCCEEEEEECC----CeEEEEECCCCeEEEEEee-----ccCCceeEEEeEeCCCCceEEEEecC------CeEEEEEC
Q 011216 134 ADGSLFVAGFQA----SQIRIYDVERGWKIQKDIL-----AKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDV 198 (491)
Q Consensus 134 ~dg~~l~~~~~d----g~i~vw~~~~~~~~~~~~~-----~~~~~~~v~~l~~sp~~~~l~~~~~d------g~i~iwd~ 198 (491)
.++.+++.|+.+ ..+.+||..++.-...... ....+..-..+.+..+++.++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 567788888753 4688899887632222101 11111122223333277888887754 35888998
Q ss_pred CCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCC--eEEEEECCCCeeeEEEe-----ccCCC
Q 011216 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRIL-----AHTSD 271 (491)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~-----~~~~~ 271 (491)
.+.+.......+.. ..+| +++...+++.++.|+.++ .+.+||..+.+....-. .....
T Consensus 476 ~t~~W~~~~~~p~~----------R~~h-----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~ 540 (695)
T 2zwa_A 476 KTREWSMIKSLSHT----------RFRH-----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLV 540 (695)
T ss_dssp TTTEEEECCCCSBC----------CBSC-----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCB
T ss_pred CCCcEEECCCCCCC----------cccc-----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccc
Confidence 88766544332211 1122 223323788888888654 69999998877543221 11122
Q ss_pred eEEEEEecCCCCEEEEEeC--C-----CeEEEEeCccccC----CCcceeeec-cccccEEEEEEcCCCCEEEEeeCC--
Q 011216 272 VNTVCFGDESGHLIYSGSD--D-----NLCKVWDRRCLNV----KGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKD-- 337 (491)
Q Consensus 272 v~~i~~~~~~~~~l~s~s~--d-----g~i~iwd~~~~~~----~~~~~~~~~-~~~~~i~~i~~sp~~~~l~~~~~d-- 337 (491)
..++.+....+.+++.|+. + ..+.+||+....- ....+.... ...... ++....++++++.|+.+
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSS
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCC
Confidence 2335555233667777765 2 4588889862210 011111110 111111 22233336777777743
Q ss_pred ------CcEEEeeCCC
Q 011216 338 ------QAIKLWDIRK 347 (491)
Q Consensus 338 ------g~i~iwd~~~ 347 (491)
..+.+||+.+
T Consensus 620 ~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLS 635 (695)
T ss_dssp CCCCTTTSEEEEETTT
T ss_pred CCCCCCCeEEEEECCC
Confidence 4578888776
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.16 Score=45.68 Aligned_cols=194 Identities=10% Similarity=0.035 Sum_probs=99.1
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEe--CC-CCceEEEE-ecCCeEEEEECCCCccccccceecc
Q 011216 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--SP-DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEI 212 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~--sp-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~ 212 (491)
.+++.++.||.|.-.|..+|+..-+.... ...++....- .+ ++..++.. +.||.|..++..+|........+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 47888999999999999999666554332 1012222110 11 22333333 5799999999888754322222211
Q ss_pred ccccccccCCCCCceecEEE---EEE-----cCCCCEEEEEecCCeEEEEECCCCeeeEEEeccC--CC-----eEEEEE
Q 011216 213 HDGLDFSAADDGGYSFGIFS---LKF-----STDGRELVAGSSDDCIYVYDLEANKLSLRILAHT--SD-----VNTVCF 277 (491)
Q Consensus 213 ~~~~~~~~~~~~~h~~~v~~---i~~-----s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~-----v~~i~~ 277 (491)
... .++.. ... ...+..+++|+.+|.+...|+.+|+.+..+.... .. ..|...
T Consensus 89 v~~------------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~ 156 (339)
T 2be1_A 89 VST------------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156 (339)
T ss_dssp HTT------------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred eec------------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence 100 01111 000 0134578999999999999999999988775321 11 111111
Q ss_pred e----cCCCCEEEEEeCCCeEEEEeCccccCCCcceeee-----ccccc--cE-EEEEEcCCCCEEEEeeCCCcEEEeeC
Q 011216 278 G----DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-----MGHLE--GI-TFIDSRGDGRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 278 ~----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~--~i-~~i~~sp~~~~l~~~~~dg~i~iwd~ 345 (491)
. +..+..++.+..+..+.+.+ + .+. ...+ ..... ++ .....+.|+.+ +.++.||.|.-+|.
T Consensus 157 ~d~~~d~~~~~v~ig~~~y~v~~~~-~----sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 157 EKIKLQECENMIVIGKTIFELGIHS-Y----DGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDL 229 (339)
T ss_dssp --------CCEEEEEEEEEECEECC-T----TSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECS
T ss_pred cccccccCCCeEEEecceEEEEEEC-C----CCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEEC
Confidence 0 01235677777766666655 2 221 1111 00000 00 00001224555 44677888888887
Q ss_pred CCCCCc
Q 011216 346 RKMSSN 351 (491)
Q Consensus 346 ~~~~~~ 351 (491)
.++...
T Consensus 230 ~~G~~~ 235 (339)
T 2be1_A 230 DFRIAR 235 (339)
T ss_dssp TTCCEE
T ss_pred CCCcEE
Confidence 765543
No 344
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.92 E-value=1.8 Score=44.16 Aligned_cols=285 Identities=9% Similarity=-0.026 Sum_probs=147.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCccc
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~ 204 (491)
..|.++...+++..|..|+. +-|..++..++.... .... ....|.++...++|.+.+ |+. +-+.+++..++...
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~ 264 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQ 264 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCE
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEE
Confidence 34888888888776666664 458888987763222 1111 123588888887777554 444 45788887765443
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe-------ccCCCeEEEEE
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCF 277 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~i~~ 277 (491)
........... -....|.++....+|. |..|+..| +.++... .. ...+. .....|.++.-
T Consensus 265 ~~~~~~~~~~~---------l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~ 331 (758)
T 3ott_A 265 HIIHDSRNIQS---------LTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFR 331 (758)
T ss_dssp EECCCTTCTTS---------CSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEE
T ss_pred EEEcCCCCcCc---------CCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEE
Confidence 22111000000 0122688998888886 66666667 5554332 21 11111 11345788876
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeec-------cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCCCC
Q 011216 278 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 350 (491)
Q Consensus 278 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~~~ 350 (491)
. .++++. .|+.+| +..++..... ......+. .....|.++.-..+|++.+ |+ ++-|..||..+.
T Consensus 332 D-~~g~lW-iGt~~G-l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~-- 402 (758)
T 3ott_A 332 D-SKGFYW-FGGANG-LIRFTDPAGE--RHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR-- 402 (758)
T ss_dssp C-TTCCEE-EEETTE-EEEESCTTSS--CCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT--
T ss_pred c-CCCCEE-EeeCCc-ceeecccccc--cceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC--
Confidence 4 556554 445555 5556543110 01111111 1124588888888887544 55 456899998752
Q ss_pred ccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeee-eEEEEecCcccCCCcEEEEEecCCeEEEEECCC
Q 011216 351 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT-LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 429 (491)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 429 (491)
.+..+........ ....+++....++|+ |-.|+..+-|.++|..+
T Consensus 403 ---------------------------------~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~ 448 (758)
T 3ott_A 403 ---------------------------------QFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHK 448 (758)
T ss_dssp ---------------------------------EEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHH
T ss_pred ---------------------------------cEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEcccc
Confidence 1111110000000 000011112233444 55566666688888643
Q ss_pred c-----cEE---EEec---C-CCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 430 G-----EQV---AALK---Y-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 430 ~-----~~~---~~~~---~-h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
. ... ..+. + ....|.++...++|.+.+.++..+-|..+|...
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 1 111 1111 1 123588899888888666333344477777654
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.76 E-value=1.4 Score=41.68 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=61.9
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeecc-----CCceeEEEeEeCCC---CceEEEEec-------
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSPD---QRHLVYASM------- 189 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~v~~l~~sp~---~~~l~~~~~------- 189 (491)
..-..|+|.|||+++++-...+.|++++..++.......... ........|+|+|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 345799999999977765444578888865553221111111 12346789999995 555554432
Q ss_pred ------CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEe
Q 011216 190 ------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (491)
Q Consensus 190 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~ 246 (491)
...|.-++...+... .......... +. ....| ....|+|.|||.++++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~-~~~~~~i~~~--~p--~~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDT-LEKPVDLLAG--LP--SSKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTE-EEEEEEEEEE--EC--CCSSC--CEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCC-cCCcEEEEEc--CC--CCCCC--CCCeEeECCCCeEEEEEC
Confidence 134555555432110 0000000000 00 11234 468899999998777644
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.73 E-value=0.97 Score=45.47 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=82.7
Q ss_pred CCCEEEEEECC------CeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCC--eEEEEECCCCccccc
Q 011216 135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESL 206 (491)
Q Consensus 135 dg~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg--~i~iwd~~~~~~~~~ 206 (491)
++++++.|+.+ ..+.+||..+..- ............- +++...+++.++.|+.++ .+.+||..+......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W-~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREW-SMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEE-EECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcE-EECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEc
Confidence 77788888753 3588999887622 2221111111111 223324788888887655 689999988776544
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEec--C-----CeEEEEECCCCee-----eEEEec---cCC
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS--D-----DCIYVYDLEANKL-----SLRILA---HTS 270 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~--d-----g~i~vwd~~~~~~-----~~~~~~---~~~ 270 (491)
....... ....+| .++.+..+ ++.++.|+. + ..+.+||+.+... -..+.. ...
T Consensus 529 ~~~g~~p-------~~r~~~----~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R 597 (695)
T 2zwa_A 529 TPKDEFF-------QNSLVS----AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR 597 (695)
T ss_dssp CCSSGGG-------GSCCBS----CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC
T ss_pred cCCCCCC-------Ccccce----eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc
Confidence 3211100 011122 23455554 667777765 2 4699999988772 112211 111
Q ss_pred CeEEEEEecCCCCEEEEEeC--------CCeEEEEeCc
Q 011216 271 DVNTVCFGDESGHLIYSGSD--------DNLCKVWDRR 300 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~--------dg~i~iwd~~ 300 (491)
.-.+++.. .++.+++.|+. ...+.+||+.
T Consensus 598 ~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 598 YGSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp BSCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ccceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 11223332 33677777774 3468899986
No 347
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.32 E-value=4.5 Score=36.60 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=40.5
Q ss_pred CCeEEEEEecC------CCCEEEEEeCCCeEEEEeCccccCCCccee--ee-ccccccEEEEEEcCCCCEEEEee-CCCc
Q 011216 270 SDVNTVCFGDE------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG--VL-MGHLEGITFIDSRGDGRYLISNG-KDQA 339 (491)
Q Consensus 270 ~~v~~i~~~~~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~-~~~~~~i~~i~~sp~~~~l~~~~-~dg~ 339 (491)
..+..+.|... +++++++.-..+.|...++. .+.... .+ ......+..+++.|||.++++.. .+|.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVN----GDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEE----TTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeC----CCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 45677888521 36677776677788877775 222221 12 22335789999999998666533 3443
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.12 E-value=9.8 Score=35.87 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=22.8
Q ss_pred ccEEEEEEcCCCC-EEEEeeCCCcEEEeeCC
Q 011216 317 EGITFIDSRGDGR-YLISNGKDQAIKLWDIR 346 (491)
Q Consensus 317 ~~i~~i~~sp~~~-~l~~~~~dg~i~iwd~~ 346 (491)
...+.|+|.|+|. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4567899999995 45556678999999753
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=86.60 E-value=15 Score=31.81 Aligned_cols=183 Identities=12% Similarity=0.018 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccc
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~ 205 (491)
.|..++-..+-. ++. . ||.|..|-......+.. .......|..++...+- .+.-. +|.|..|-....-...
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~---P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg 134 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV---PAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT 134 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC---CGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC---CcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC
Confidence 455555543322 333 4 88888887654211111 11112257666654433 33334 8999999765432221
Q ss_pred ccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEE
Q 011216 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l 285 (491)
... . ....|..++...+.. ++-. ||.|+.|-......+..-......|..++.. ..+.+
T Consensus 135 ~~~---~-------------~~~~i~~i~~G~~~~--~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G--~~hs~ 193 (282)
T 3qhy_B 135 VPA---E-------------AQSGVTALDGGVYTA--LAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--IFHSL 193 (282)
T ss_dssp CCG---G-------------GGSSEEEEEECSSEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE
T ss_pred CCc---c-------------CCCCeEEEEcccCEE--EEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEec--CCEEE
Confidence 110 0 011466666654432 2233 7999999765432221111223567777764 33444
Q ss_pred EEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 286 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 286 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+. .||.|..|-.......+.+. .....|..|+...+.. ++. . ||.|..|-...
T Consensus 194 al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 194 AL--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EE--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred EE--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 44 59999999765322222221 1224566776654432 333 3 89999997654
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.44 E-value=27 Score=33.59 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCeEEEEEecCCCCEEEEE-eCCCeEEEEeCccccC--CCc-------ceeeeccccccEEEEEEcCCCCEEEEeeCCCc
Q 011216 270 SDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNV--KGK-------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 339 (491)
Q Consensus 270 ~~v~~i~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~--~~~-------~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~ 339 (491)
.....+.++ |++++++.+ -.+.++.++|++.... ..+ ...... -.-.....+|.++|....+..-|..
T Consensus 323 ksPHGv~vs-PDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTS-SDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEEC-TTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCcceeeC-CCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence 344567777 667666555 4678999999873211 011 111122 2234567899999966667778999
Q ss_pred EEEeeCCC
Q 011216 340 IKLWDIRK 347 (491)
Q Consensus 340 i~iwd~~~ 347 (491)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999865
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.18 E-value=18 Score=31.34 Aligned_cols=144 Identities=12% Similarity=0.058 Sum_probs=75.4
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~ 250 (491)
.|..++.... ..++. . ||.|..|-....-...... . ....|..++...+.. ++. . ||.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~---~-------------~~~~i~~ia~G~~hs-~~l-~-~G~ 82 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPA---A-------------TQSGVDAIAAGNYHS-LAL-K-DGE 82 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCG---G-------------GGSCCCEEEECSSEE-EEE-E-TTE
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCc---c-------------CCCCEEEEEeCCCEE-EEE-E-CCE
Confidence 4666665432 22333 4 8999999765432222111 0 001466666654432 333 4 899
Q ss_pred EEEEECCCCeeeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeeeccccccEEEEEEcCCCCE
Q 011216 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY 330 (491)
Q Consensus 251 i~vwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~i~~sp~~~~ 330 (491)
|+.|-....-.+..-..-...|..++.. . ...+.-. ||.|..|-.......+ ........|..++...+ +
T Consensus 83 v~~wG~n~~Gqlg~P~~~~~~v~~ia~G-~--~hs~al~-~G~v~~wG~n~~gqlg----~~~~~~~~i~~i~~G~~--~ 152 (282)
T 3qhy_B 83 VIAWGGNEDGQTTVPAEARSGVDAIAAG-A--WASYALK-DGKVIAWGDDSDGQTT----VPAEAQSGVTALDGGVY--T 152 (282)
T ss_dssp EEEEECCTTSTTCCCGGGSSSEEEEEEE-T--TEEEEEE-TTEEEEEECCTTSTTS----CCGGGGSSEEEEEECSS--E
T ss_pred EEEeeCCCCCCCCCCcccCCCeEEEECc-C--CEEEEEe-CCeEEEecCCCCCcCC----CCccCCCCeEEEEcccC--E
Confidence 9999765422211111123468888775 2 2333445 9999999765221111 11123356777776543 2
Q ss_pred EEEeeCCCcEEEeeCCC
Q 011216 331 LISNGKDQAIKLWDIRK 347 (491)
Q Consensus 331 l~~~~~dg~i~iwd~~~ 347 (491)
.+.-. ||.|..|-...
T Consensus 153 ~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 153 ALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp EEEEE-TTEEEEEECCT
T ss_pred EEEEE-CCEEEEecCCC
Confidence 23333 79999997655
No 352
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=84.91 E-value=21 Score=31.79 Aligned_cols=209 Identities=9% Similarity=0.018 Sum_probs=112.5
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEE---CCC------CeEEEEEeeccCCceeEEEe-EeCC--CCceEEEEecCCeE
Q 011216 126 RAYVSQFSADGSLFVAGFQASQIRIYD---VER------GWKIQKDILAKSLRWTVTDT-SLSP--DQRHLVYASMSPIV 193 (491)
Q Consensus 126 ~v~~~~~s~dg~~l~~~~~dg~i~vw~---~~~------~~~~~~~~~~~~~~~~v~~l-~~sp--~~~~l~~~~~dg~i 193 (491)
.+..+........|+.-+..|.++-.. +.. |..+...+.... ...|..+ .... +..++++.+.+|.+
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444455566666677655443 332 222111222222 2245444 4442 57899999999999
Q ss_pred EEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC--CCe---------ee
Q 011216 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANK---------LS 262 (491)
Q Consensus 194 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~--~~~---------~~ 262 (491)
+.-.+..-...... ....+.+.. .+.+..+........|+..+..|.+..+... .-. ..
T Consensus 122 Kr~~l~~~~~~~r~----G~~~i~lke------~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~ 191 (327)
T 3uc1_A 122 KKSKLTDFDSNRSG----GIVAVNLRD------NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 191 (327)
T ss_dssp EEEEGGGGCCCCSS----CEESCBCCT------TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEES
T ss_pred EEeEHHHhhccccC----ceEEEEECC------CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeee
Confidence 99886542221110 000011110 1145555555556678888999999888876 211 11
Q ss_pred EEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCC-----CcceeeeccccccEEEEEEcCCCCEEEEeeCC
Q 011216 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 337 (491)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~d 337 (491)
..+ .....|.++... ..+..++..+..|.++.-.+...... +.....+....+.+..+....+...++..+.+
T Consensus 192 i~L-~~~d~Vv~~~~~-~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 192 MRF-NIDDRLLSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp SCC-CTTCCEEEEEEC-CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGG
T ss_pred ecC-CCCCEEEEEEEE-CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCC
Confidence 112 234567777665 45568889999999998876533221 11112222213345444444445567777778
Q ss_pred CcEEEeeCCC
Q 011216 338 QAIKLWDIRK 347 (491)
Q Consensus 338 g~i~iwd~~~ 347 (491)
|.+..++...
T Consensus 270 G~~ir~~~~~ 279 (327)
T 3uc1_A 270 GGVIRTAARQ 279 (327)
T ss_dssp GCEEEEEGGG
T ss_pred CeEEEEehhh
Confidence 8877777654
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.10 E-value=28 Score=32.72 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=60.5
Q ss_pred eEEEeEeCCCCc-eEEEEecCCeEEEEECCCCcc-ccccceeccccccccccCCCCCceecEEEEEEcCC----CCEEEE
Q 011216 171 TVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVA 244 (491)
Q Consensus 171 ~v~~l~~sp~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~----~~~l~~ 244 (491)
....|+|.|++. .|+++...|.|++++...... ..+..+.... ......+.......|+|+|+ +.+.++
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~-----~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLV-----QSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTB-----CCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCccee-----ccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 467899999996 566677889999997543211 1111111100 00000011236789999996 433333
Q ss_pred Eec--C----------CeEEEEECCC----------CeeeEEEe--ccCCCeEEEEEecCCCCEEEEEeCC
Q 011216 245 GSS--D----------DCIYVYDLEA----------NKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 245 ~~~--d----------g~i~vwd~~~----------~~~~~~~~--~~~~~v~~i~~~~~~~~~l~s~s~d 291 (491)
-+. + ..|.-|.+.. .+.+..+. ...-....|.|. +++.++++.+..
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg-pDG~LYv~~Gd~ 159 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG-PDGFLYIILGDG 159 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC-TTSCEEEEECCT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC-CCCcEEEEeCCC
Confidence 222 1 1344465532 12233332 111235789997 788877776654
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.24 E-value=30 Score=36.17 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=33.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD 162 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~ 162 (491)
...|.+++..++..++++-+.|+++|+|++.++..+...
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 446788888899999999999999999999999777654
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=80.17 E-value=35 Score=31.09 Aligned_cols=166 Identities=8% Similarity=-0.028 Sum_probs=76.7
Q ss_pred CCceEEEEEcC--CCCEEEEEECCC----eEEEEECCCCeEEEEEeec---cC--------CceeEEEeEeCCC--CceE
Q 011216 124 TSRAYVSQFSA--DGSLFVAGFQAS----QIRIYDVERGWKIQKDILA---KS--------LRWTVTDTSLSPD--QRHL 184 (491)
Q Consensus 124 ~~~v~~~~~s~--dg~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~---~~--------~~~~v~~l~~sp~--~~~l 184 (491)
...|.++++.| ++.+.| ++..| .|... .+.+......... .. ....|.++++.|. ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 45799999998 555554 44444 34332 2333222222111 00 1125888999872 4566
Q ss_pred EEEecCCeEEEEECCCCccccccceeccccccccccC--CCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCee
Q 011216 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL 261 (491)
Q Consensus 185 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~ 261 (491)
.++...+.|...+-...................+... ........+.+|.+.|. ...|+++..++.|...+- .++.
T Consensus 132 ~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 6666666555443222222111110000000000000 00001225888999873 445666655554544432 2222
Q ss_pred eEEEec-----c--------CCCeEEEEEecCCCCEEEEEeCCC
Q 011216 262 SLRILA-----H--------TSDVNTVCFGDESGHLIYSGSDDN 292 (491)
Q Consensus 262 ~~~~~~-----~--------~~~v~~i~~~~~~~~~l~s~s~dg 292 (491)
-..+.. + ...+.++.+.|.+...|+.+...+
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 122211 0 124889999865567777777655
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.52 E-value=33 Score=30.44 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=93.6
Q ss_pred CceEEE-EEcC--CCCEEEEEECCCeEEEEECCCCeEE----EEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEE
Q 011216 125 SRAYVS-QFSA--DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (491)
Q Consensus 125 ~~v~~~-~~s~--dg~~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd 197 (491)
..|..+ .+.. +..+++..+.+|.|+--.+..-... ........ ...+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 444444 4443 5789999999999998886541100 11112222 23455555445556788888899988888
Q ss_pred CCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe-------eeE--EEecc
Q 011216 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-------LSL--RILAH 268 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~-------~~~--~~~~~ 268 (491)
+...+.............+.+.. ...|.++...+++..++..+..|.++.-.+..-. -+. .+..-
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~~------~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFNI------DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCCT------TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred CcccccCcCCcCCCCeeeecCCC------CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 76211111111111111122211 1257777666667789999999999888764321 111 22222
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 269 ~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
.+.+..+... .+...++..+.+|.+.-++..
T Consensus 248 ~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 248 RGRLVGALIV-DDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp TCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGG
T ss_pred CCeEEEEEEe-CCCccEEEEcCCCeEEEEehh
Confidence 3455555554 344566677778887777664
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.94 E-value=38 Score=30.79 Aligned_cols=174 Identities=13% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCCceEEEEEcCCCCEEEE--EEC-------------CCeEEEEECCCC--eEEEEEeeccC---CceeEEEeEeC---C
Q 011216 123 TTSRAYVSQFSADGSLFVA--GFQ-------------ASQIRIYDVERG--WKIQKDILAKS---LRWTVTDTSLS---P 179 (491)
Q Consensus 123 h~~~v~~~~~s~dg~~l~~--~~~-------------dg~i~vw~~~~~--~~~~~~~~~~~---~~~~v~~l~~s---p 179 (491)
+--.|+.+...+++++-+. |-. .-.|.+||+.++ +.++....... ....+..+.+. |
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 3456788888888775442 211 126889999998 77776554321 12357777776 3
Q ss_pred C----CceEEEEe-cCCeEEEEECCCCccccccceecccc-ccccccCCCCCc----eecEEEEEEcCC----CCEEEEE
Q 011216 180 D----QRHLVYAS-MSPIVHIVDVGSGTMESLANVTEIHD-GLDFSAADDGGY----SFGIFSLKFSTD----GRELVAG 245 (491)
Q Consensus 180 ~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h----~~~v~~i~~s~~----~~~l~~~ 245 (491)
+ +.+...+. ..+-|.|+|+.+++..++.......+ ...+.. .|. ...+..|+++|+ ++.|...
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i---~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~ 241 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDY---GGKEYEFKAGIFGITLGDRDSEGNRPAYYL 241 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEE---TTEEEEECCCEEEEEECCCCTTSCCEEEEE
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEE---CCEEeEeccCceEEEecCCcCCCCeEEEEE
Confidence 2 33444433 35689999999988765542111111 000000 122 237999999998 7777776
Q ss_pred ecCC-eEEEEE---CCCC---eeeEEEeccCC---CeEEEEEecCCCCEEEEEeCCCeEEEEeCc
Q 011216 246 SSDD-CIYVYD---LEAN---KLSLRILAHTS---DVNTVCFGDESGHLIYSGSDDNLCKVWDRR 300 (491)
Q Consensus 246 ~~dg-~i~vwd---~~~~---~~~~~~~~~~~---~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~ 300 (491)
...+ .++-.. +... ..+..+ +..+ .-..+++.+.++.++++--....|..|+..
T Consensus 242 plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~ 305 (381)
T 3q6k_A 242 AGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQ 305 (381)
T ss_dssp ESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETT
T ss_pred ECCCCcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCC
Confidence 6554 233222 1111 112222 3332 333455533677778888888999999975
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.94 E-value=34 Score=35.70 Aligned_cols=38 Identities=32% Similarity=0.210 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEe
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 266 (491)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 57788888888999999999999999999999877653
No 359
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=78.13 E-value=35 Score=30.00 Aligned_cols=204 Identities=10% Similarity=0.014 Sum_probs=110.8
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEE------EEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECCCCcccc-c
Q 011216 134 ADGSLFVAGFQASQIRIYDVERGWKI------QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES-L 206 (491)
Q Consensus 134 ~dg~~l~~~~~dg~i~vw~~~~~~~~------~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~-~ 206 (491)
++..++++.+.+|.|+--.+..-... ......... ..+..+........++..+..|.++-.....-.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45677888999999988765432100 000111222 234444444455667777888877766543210000 0
Q ss_pred cceeccccccccccCCCCCceecEEEEEEcC---CCCEEEEEecCCeEEEEECCC-------CeeeEEEeccCCCeEEEE
Q 011216 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNTVC 276 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~i~ 276 (491)
..-......+.+... ..|.++...+ +..+|+..+..|.++...+.. +.....+.. .+.+..+.
T Consensus 85 ~~G~~i~~~l~l~~~------e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 85 SKGQNISELINLGDQ------EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp ---CBGGGTSCCCTT------CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CCCcChhhccCCCCC------CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 000000011111111 1344443332 466788999999999888743 222223333 45666666
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCccccCC-----CcceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 277 FGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 277 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.. .++..++..+.+|.+..+........ +.....+.. .+.|..+..-+++..+++.+..|..+..++..
T Consensus 158 ~~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 158 IV-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred Ee-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 65 44567888899999998887532211 222223332 34566665555566788888999988888765
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.96 E-value=64 Score=32.32 Aligned_cols=203 Identities=9% Similarity=-0.000 Sum_probs=98.6
Q ss_pred eEEEE-EcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEeeccCCc-----eeEEEeEeCCCCceEEEE--------
Q 011216 127 AYVSQ-FSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPDQRHLVYA-------- 187 (491)
Q Consensus 127 v~~~~-~s~dg~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~-----~~v~~l~~sp~~~~l~~~-------- 187 (491)
...+. ++||+++++.+-. -..++++|+.+++.+...+...... .....++|..+...+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34444 8999998876432 2379999999985543221100000 011234776333333321
Q ss_pred --ecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCE-----EEEEe---cCCeEEEEECC
Q 011216 188 --SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-----LVAGS---SDDCIYVYDLE 257 (491)
Q Consensus 188 --~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~-----l~~~~---~dg~i~vwd~~ 257 (491)
+....|+.|.+.+.......-....... --.....++++++ +++.+ ....+++.|..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 277 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEY-------------IYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTK 277 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTS-------------CEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECS
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCc-------------eEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCC
Confidence 1224688888776543322222111110 1223455666652 34333 12456777765
Q ss_pred C--CeeeEEEeccCCCeEEEEEecCCCCEEEEE----------eCCCeEEEEeCccccCC---Ccceee-ec-cccccEE
Q 011216 258 A--NKLSLRILAHTSDVNTVCFGDESGHLIYSG----------SDDNLCKVWDRRCLNVK---GKPAGV-LM-GHLEGIT 320 (491)
Q Consensus 258 ~--~~~~~~~~~~~~~v~~i~~~~~~~~~l~s~----------s~dg~i~iwd~~~~~~~---~~~~~~-~~-~~~~~i~ 320 (491)
. ++. ..+..... . .+..+ .++.+++.. ...+.|...|+...... ...... +. .....+.
T Consensus 278 ~~~~~~-~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 278 YKNLKL-QKINMPSD-A-TLQGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSSCEE-EECCSCTT-C-EEEEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCCcc-eEeecCCc-c-eEeee-ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 3 332 22322111 1 12222 344444422 24677888888643210 111222 22 2334577
Q ss_pred EEEEcCCCCEEEEeeCCCc--EEEeeCCC
Q 011216 321 FIDSRGDGRYLISNGKDQA--IKLWDIRK 347 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~dg~--i~iwd~~~ 347 (491)
.+.+..+ .++++...++. |.++|+.+
T Consensus 354 ~~~~~~~-~l~~~~~~~~~~~l~~~~~~~ 381 (711)
T 4hvt_A 354 FISTTKD-RVFLATYDNVVAKVVTFTLEN 381 (711)
T ss_dssp EEEECSS-CEEEEEEETTEEEEEEECEET
T ss_pred EEEEECC-EEEEEEEECCEEEEEEEECCC
Confidence 8888865 56666666664 66777644
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.34 E-value=42 Score=28.92 Aligned_cols=206 Identities=7% Similarity=-0.007 Sum_probs=114.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEE---EECCCCeEEEEEeeccCCceeEEEeEeCC-CCceEEEEecCCeEEEEECC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRI---YDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVG 199 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~v---w~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg~i~iwd~~ 199 (491)
.+.+..+.......+|+.-+..|.++- |++....... + ... ...|..+.... +..+++..+.+|.++-..+.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--l-l~~-~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~ 98 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--L-KSR-EEKIVGAFIREKFGNRLLLATKKGYVKKIPLA 98 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--C-SST-TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--c-CCC-CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence 455555555445556666667786654 3333331111 2 222 33465554321 56789999999999998875
Q ss_pred CCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCC---------eeeEEEeccCC
Q 011216 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---------KLSLRILAHTS 270 (491)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~ 270 (491)
.-. .... ....+.+.. .+.+..+........++..+..|.++.+....- .....+. ...
T Consensus 99 ~~~-~~~~----G~~~i~lke------gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d 166 (276)
T 3no0_A 99 EFE-YKAQ----GMPIIKLTE------GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KND 166 (276)
T ss_dssp GTT-TCST----TEECSCCCT------TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTC
T ss_pred Hhh-hhcC----CeEEEecCC------CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCC
Confidence 432 1110 011111111 114555555556668888999999888876421 1111222 235
Q ss_pred CeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCC---cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEE--eeC
Q 011216 271 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG---KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL--WDI 345 (491)
Q Consensus 271 ~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~i--wd~ 345 (491)
.|..+... .++..++..+..|.++...+....... +-+..+ ...+.+..+....+...++..+.+|.+.. ++.
T Consensus 167 ~vv~~~~~-~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 167 ETSGLRIW-NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp CEEEEEEE-SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred EEEEEEEe-CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 56666654 446688899999999998875332221 222223 23344544443334446677778888777 776
Q ss_pred CC
Q 011216 346 RK 347 (491)
Q Consensus 346 ~~ 347 (491)
..
T Consensus 245 ~~ 246 (276)
T 3no0_A 245 KD 246 (276)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=67.92 E-value=71 Score=28.96 Aligned_cols=194 Identities=11% Similarity=0.026 Sum_probs=87.2
Q ss_pred CEEEEEECCCeEEEEECCC-CeEEEEEeeccCCceeEEEeEeCC-CCceEEEEecCC----eEEEEECCCCcccccccee
Q 011216 137 SLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSP----IVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 137 ~~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~ 210 (491)
..|.+|+..| +.+++... +......... .....|.+|++.| +...|.+++..+ .|... .+.++.-......
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 3577777776 55555432 2122221111 1223699999998 334455555454 34332 2333221111110
Q ss_pred ccccccccccCCCCC----ceecEEEEEEcC-C-CCEEEEEecCCeEEEEECCCCeeeEEEec-----------------
Q 011216 211 EIHDGLDFSAADDGG----YSFGIFSLKFST-D-GRELVAGSSDDCIYVYDLEANKLSLRILA----------------- 267 (491)
Q Consensus 211 ~~~~~~~~~~~~~~~----h~~~v~~i~~s~-~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------------- 267 (491)
..+... ... ....|.++++.| + ...|.++...+.|...+-. ++.-..+..
T Consensus 100 -----~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g 172 (394)
T 3b7f_A 100 -----PAFNKA-PEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDG 172 (394)
T ss_dssp -----CCCCCC-C----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC---
T ss_pred -----ccCCCc-ccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccC
Confidence 000000 000 112578899987 2 4556666666666555322 222112211
Q ss_pred --cCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceee-ecc-c--------cccEEEEEEcCC-CCEEEEe
Q 011216 268 --HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-LMG-H--------LEGITFIDSRGD-GRYLISN 334 (491)
Q Consensus 268 --~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~-~--------~~~i~~i~~sp~-~~~l~~~ 334 (491)
....+.+|.+.|.+...|+.+..++.|...+-. ......+.. ... + ...+.+|.++|+ ...|+++
T Consensus 173 ~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg--G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 173 TPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA--GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp -CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST--TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC--CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 123578899875444445555444444433211 011111110 000 0 134888999885 3566666
Q ss_pred eCCCcEEEe
Q 011216 335 GKDQAIKLW 343 (491)
Q Consensus 335 ~~dg~i~iw 343 (491)
...+ |...
T Consensus 251 ~~~g-l~~s 258 (394)
T 3b7f_A 251 NHCG-IYRM 258 (394)
T ss_dssp ETTE-EEEE
T ss_pred cCCe-EEEe
Confidence 5544 4433
No 363
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=66.76 E-value=50 Score=32.88 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=29.7
Q ss_pred cEEEEEEcCCCCEEEEEecCCeEEEEECCCCeeeEEEec
Q 011216 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (491)
Q Consensus 229 ~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 267 (491)
.|.++.+ +..++++-+.|.++++|++.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 367999999999999999999998776543
No 364
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=65.81 E-value=72 Score=28.21 Aligned_cols=155 Identities=6% Similarity=-0.019 Sum_probs=86.9
Q ss_pred CCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC-
Q 011216 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 257 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~- 257 (491)
|+...+++.+.+|.|+--.+..-+..... ++.+. -.+.+..+........|+..+..|.++-+...
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-------~~~lk------e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~e 69 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQ-------DFAMK------DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHE 69 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTC-------CCCCC------TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcc-------ccccC------CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHH
Confidence 56778889999999987654321110000 00000 01134455555556678888888987766542
Q ss_pred --------CCeeeEEEe--ccCCCeEEEEEecC--CCCEEEEEeCCCeEEEEeCccccCC----CcceeeeccccccEEE
Q 011216 258 --------ANKLSLRIL--AHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNVK----GKPAGVLMGHLEGITF 321 (491)
Q Consensus 258 --------~~~~~~~~~--~~~~~v~~i~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~i~~ 321 (491)
.|.++..+. .....|.++...+. ++.+++..+.+|.++-..+...... +.....+... +.+..
T Consensus 70 lp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~ 148 (323)
T 1wp5_A 70 LPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVD 148 (323)
T ss_dssp SCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEE
T ss_pred CcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEE
Confidence 122211111 12345665543322 2567889999999999987644321 2222223322 45555
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+........++..+.+|.+..++...
T Consensus 149 ~~~~~~~~~i~l~T~~G~~irf~~~e 174 (323)
T 1wp5_A 149 VHLTDGMNELFLVTHNGYALWFDESE 174 (323)
T ss_dssp EEEECSCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 55544556778888899888887754
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=63.20 E-value=75 Score=31.62 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=29.4
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCccccccce
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 209 (491)
.|.++.+ +..++++-+.|.++++|++.++++.....+
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 478999999999999999999987666555
No 366
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=62.09 E-value=36 Score=33.14 Aligned_cols=58 Identities=24% Similarity=0.280 Sum_probs=37.9
Q ss_pred EEEEEcCCCCEEEEEEC------------CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEE
Q 011216 128 YVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (491)
Q Consensus 128 ~~~~~s~dg~~l~~~~~------------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~ 187 (491)
--|+|+|+|++++.-.. +..+.+.+..+++. ..+... .....++.++|+||++.|++.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~-~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI-RRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE-EEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE-EEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 55899999996654321 12456666666643 333332 234579999999999988765
No 367
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.96 E-value=82 Score=27.56 Aligned_cols=251 Identities=10% Similarity=0.026 Sum_probs=124.5
Q ss_pred CCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECC-
Q 011216 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE- 257 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~- 257 (491)
|+...+++.+.+|.|+--.+..-+...... .....+.+. -.+.+..+........|+..+..|.++-+...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~--~g~~~~~~k------e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~e 72 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGG--KGKSAARIK------EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 72 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCC--CCceeeeeC------CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhH
Confidence 456678889999999877765422111000 000000000 01134444444456678888888887766542
Q ss_pred --C------CeeeE---EEeccCCCeEEEEEec--CCCCEEEEEeCCCeEEEEeCccccCC---CcceeeeccccccEEE
Q 011216 258 --A------NKLSL---RILAHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVWDRRCLNVK---GKPAGVLMGHLEGITF 321 (491)
Q Consensus 258 --~------~~~~~---~~~~~~~~v~~i~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~ 321 (491)
. |.++. .+ .....|.++...+ .++.+++..+..|.++-..+...... +.....+..+ +.+..
T Consensus 73 lp~~~~~a~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~ 150 (307)
T 1zi0_A 73 LPEATRGARGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIG 150 (307)
T ss_dssp SCCCCSSSCCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEE
T ss_pred CcCCCCCCCCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEE
Confidence 1 22211 12 2334566654321 34567889999999999877533221 2222233333 45555
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCCCCCccccccCcccceeeceeecCCCCcccccCCCCCeeEEEcccceeeeeEEEE
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 401 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (491)
+....+...++..+.+|.+..++............ +.....+.... .+..+.
T Consensus 151 ~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-------------------------Gv~~i~L~~~d---~Vv~~~ 202 (307)
T 1zi0_A 151 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-------------------------GVRGIRLGEGD---KVVSLI 202 (307)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-------------------------CEECCCCCTTC---CEEEEE
T ss_pred EEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-------------------------CeEeEEeCCCC---EEEEEE
Confidence 54444555677788888888777654221111000 00001111111 111111
Q ss_pred ecCcccCCCcEEEEEecCCeEEEEECCCc-------cEEE--EecCCCCCeeeeEecCCCCeEEEEECCCcEEEecCCC
Q 011216 402 FSPVYSTGQKYIYTGSHDSCVYVYDLVSG-------EQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 471 (491)
Q Consensus 402 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-------~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~Dg~i~iw~~~~ 471 (491)
.. .++..|++.+..|.++-.++..- +-+. .+..-.+.+..+....+...|+..+.+|.+...++..
T Consensus 203 ---~~-~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 203 ---VP-RGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ---CC-CSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred ---Ee-cCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11 23456888889999888876321 1122 2222234555544433445566667788877666654
No 368
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=60.09 E-value=1.4e+02 Score=29.78 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=35.5
Q ss_pred CcEEEEEecCC--eEEEEECCCcc-EEEE-ecCC-CCCeeeeEecCCCC-eEEEEEC---CCcEEEecCC
Q 011216 410 QKYIYTGSHDS--CVYVYDLVSGE-QVAA-LKYH-TSPVRDCSWHPSQP-MLVSSSW---DGDVVRWEFP 470 (491)
Q Consensus 410 ~~~l~~g~~dg--~i~iwd~~~~~-~~~~-~~~h-~~~v~~~~~s~~~~-~l~s~~~---Dg~i~iw~~~ 470 (491)
+.++++...++ .|+++|+.+++ .+.. +... .+.+.....++++. ++++.+. -+.+..+++.
T Consensus 360 ~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 360 DRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp SCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 46777777776 46777776664 2222 2211 34566667777776 4444332 3567777775
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=58.19 E-value=96 Score=27.17 Aligned_cols=159 Identities=8% Similarity=0.051 Sum_probs=88.2
Q ss_pred CCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCC
Q 011216 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (491)
Q Consensus 179 p~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~ 258 (491)
|+..++++.+.+|.|+--.+..-+..... ......+.+.. .+.+..+........++..+..|.++-+....
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~--~~g~~~~~lke------~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ 77 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTG--GKGLSSFDLND------GDEIVIALCVNTHDYLFMISNEGKLYLINAYE 77 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSS--CCCEECCCCCT------TCCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccC--CCCceecccCC------CCEEEEEEEECCCCEEEEEECCCeEEEEEHHH
Confidence 56778889999999988766432211100 00000000000 11344555555566788888899887776532
Q ss_pred C---------ee---eEEEeccCCCeEEEEEecC--CCCEEEEEeCCCeEEEEeCccccC---CCcceeeeccccccEEE
Q 011216 259 N---------KL---SLRILAHTSDVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITF 321 (491)
Q Consensus 259 ~---------~~---~~~~~~~~~~v~~i~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~ 321 (491)
- .. ...+ .....|..+...+. ++..++..+..|.++...+..... .+.....+.. .+.+..
T Consensus 78 ip~~~r~~~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~ 155 (312)
T 1suu_A 78 IKDSSRASKGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTS 155 (312)
T ss_dssp SCC-------CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEE
T ss_pred CCCCCccCCCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEE
Confidence 1 11 0112 12344555544321 466788899999999988764321 2223333433 445555
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 322 IDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 322 i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+....+...++..+.+|.+..+....
T Consensus 156 ~~~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 156 AEIVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCCEEEEEeCCCcEEEEEHHH
Confidence 55544556788888999988888765
No 370
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=57.85 E-value=1e+02 Score=27.25 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=105.3
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEE-EEEeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC---CCccccccce
Q 011216 134 ADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG---SGTMESLANV 209 (491)
Q Consensus 134 ~dg~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~ 209 (491)
|+..++++.+.+|.|+--.+..-... ........ ...+..+........|+..+..|.+.-+... ....... -
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~--G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDL--G 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSC--C
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCC--C
Confidence 45677888899998887654310000 00011122 2234444444455667777778876655542 1111000 0
Q ss_pred eccccccccccCCCCCceecEEEEEEcC---CCCEEEEEecCCeEEEEECCC--------CeeeEEEeccCCCeEEEEEe
Q 011216 210 TEIHDGLDFSAADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEA--------NKLSLRILAHTSDVNTVCFG 278 (491)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~v~~i~~s~---~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~~i~~~ 278 (491)
......+.+.. ...|.++..-+ ++.+++.++.+|.++-..+.. +.....+.. .+.+..+...
T Consensus 80 ~~i~~~i~L~~------~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~ 152 (323)
T 1wp5_A 80 QHIANIIPIDR------DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLT 152 (323)
T ss_dssp EEGGGTSCCCT------TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEE
T ss_pred cChhhccCCCC------CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEe
Confidence 00011111111 11355443333 256899999999999988742 222222322 2556666555
Q ss_pred cCCCCEEEEEeCCCeEEEEeCccccCCC-----cceeeeccccccEEEEEEcCCCC-EEEEeeCCCcEEEeeCCC
Q 011216 279 DESGHLIYSGSDDNLCKVWDRRCLNVKG-----KPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 279 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~i~~i~~sp~~~-~l~~~~~dg~i~iwd~~~ 347 (491)
.....++..+.+|.+..+........+ .....+. ..+.|.++...+++. .+++.+..|..+..++..
T Consensus 153 -~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 153 -DGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp -CSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred -CCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 445567788899998888765322111 1222222 234465654434444 678888888887777654
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.89 E-value=1.1e+02 Score=27.62 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=63.8
Q ss_pred EEEEEEcCCCCEEEEEecCCeEEEEECCCC-----------eeeEEEec-cCCCeEEEEEecCCCCEEEEEeCCCeEEEE
Q 011216 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEAN-----------KLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVW 297 (491)
Q Consensus 230 v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~-~~~~v~~i~~~~~~~~~l~s~s~dg~i~iw 297 (491)
+..++.+......++-..+|.|+.|-.... .....+.. ....|..++.. ....+.-..+|.|..|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 445566666667777788999999954321 01111111 12256666653 4455666789999999
Q ss_pred eCccccCCC--------cceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 298 DRRCLNVKG--------KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 298 d~~~~~~~~--------~~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
-......-+ .+..........|..++......+.+....||.|..|-...
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Confidence 754211100 01111111223566776654335666677899999997554
No 372
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.33 E-value=21 Score=38.16 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=31.7
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEECCCCcccccccee
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 210 (491)
.+.+++..++..++++-+.|++++||++.++++.....+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 3445566678889999999999999999999876655443
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=54.81 E-value=31 Score=33.56 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=38.9
Q ss_pred eEEEeEeCCCCceEEEEecC------------CeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC
Q 011216 171 TVTDTSLSPDQRHLVYASMS------------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~ 238 (491)
..-.|+|+|.|++++.-..+ ..+.+.+..+++...+...+. ...++.++|+||
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~---------------gaE~TG~~fspD 541 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------------GCEVTGISFSPD 541 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT---------------TCEEEEEEECTT
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC---------------CccCcCeeECCC
Confidence 35678999999866554321 245555666666554443321 127999999999
Q ss_pred CCEEEEE
Q 011216 239 GRELVAG 245 (491)
Q Consensus 239 ~~~l~~~ 245 (491)
++.|++.
T Consensus 542 g~tlfvn 548 (592)
T 3zwu_A 542 QKTLFVG 548 (592)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9887765
No 374
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=54.71 E-value=93 Score=30.81 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCceEEEEE----cCCCC---EEEEEECCCeEEE-EECCCCeEEEEEeeccCCceeEEEeEeCCCC--ceEEEEecCCeE
Q 011216 124 TSRAYVSQF----SADGS---LFVAGFQASQIRI-YDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIV 193 (491)
Q Consensus 124 ~~~v~~~~~----s~dg~---~l~~~~~dg~i~v-w~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~l~~~~~dg~i 193 (491)
....+.++. ..+|+ .+..|+.+|.|.- -....+..+......-....+|..|.++++. .+|++++..+.+
T Consensus 396 ~~~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~ 475 (663)
T 1olz_A 396 DVNYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVV 475 (663)
T ss_dssp SCCEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEE
T ss_pred CCceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEE
Confidence 334667765 34554 6778999998743 3444443333333232334578899999988 889988877766
Q ss_pred EE
Q 011216 194 HI 195 (491)
Q Consensus 194 ~i 195 (491)
+|
T Consensus 476 ~v 477 (663)
T 1olz_A 476 QA 477 (663)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 375
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=53.63 E-value=1.3e+02 Score=27.20 Aligned_cols=162 Identities=10% Similarity=-0.005 Sum_probs=90.0
Q ss_pred eCCCCceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEEC
Q 011216 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (491)
Q Consensus 177 ~sp~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~ 256 (491)
+-|+..++++.+.+|.|+--.+..-+..... ......+.+ .....+..+........|+..+..|.++-+..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~--g~g~~~~~l------ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRG--GRGRSAAST------KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCC--CCCSEEEEC------SCCCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccC--CCCceeccc------CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 4577889999999999987654321110000 000000000 01124555555566677888888888776654
Q ss_pred C---------CCeeeEEEe--ccCCCeEEEEEec--CCCCEEEEEeCCCeEEEEeCccccC---CCcceeeeccccccEE
Q 011216 257 E---------ANKLSLRIL--AHTSDVNTVCFGD--ESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGIT 320 (491)
Q Consensus 257 ~---------~~~~~~~~~--~~~~~v~~i~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~ 320 (491)
. .|..+..+. .....|.++...+ ..+.+|+.++..|.++...+..... .+.....+.. .+.+.
T Consensus 75 ~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv 153 (370)
T 3l6v_A 75 HQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALV 153 (370)
T ss_dssp GGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEE
T ss_pred HHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEE
Confidence 2 122221110 2344566654432 2456899999999999988764332 2222223332 34454
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 321 FIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 321 ~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
.+........++..+.+|.+..++...
T Consensus 154 ~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 154 GVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 555444556778888889888887654
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.53 E-value=13 Score=39.89 Aligned_cols=39 Identities=8% Similarity=0.030 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 011216 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI 163 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 163 (491)
..+.+++..++..+|++-+.|+++|||++.++..+....
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 455667778888999999999999999999997766543
No 377
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=52.71 E-value=1.3e+02 Score=27.19 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred eEEEEECCCC--eeeEEEec------cCCCeEEEEEe-c-CC----CCEEEEE-eCCCeEEEEeCccccCCCcceeee--
Q 011216 250 CIYVYDLEAN--KLSLRILA------HTSDVNTVCFG-D-ES----GHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVL-- 312 (491)
Q Consensus 250 ~i~vwd~~~~--~~~~~~~~------~~~~v~~i~~~-~-~~----~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~-- 312 (491)
.|.+||+.++ +.++++.- ....+..+.+. . ++ +.+++.+ +..+-|.|+|+. .++.-+.+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~----~~~swRv~~~ 199 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK----KQDSWNVTHP 199 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT----TTEEEEEECG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC----CCcEEEEccC
Confidence 5777888887 77666542 23457788775 1 11 3344433 346789999986 22221111
Q ss_pred ------------ccc----cccEEEEEEcCC----CCEEEEeeCCCcEEEeeC
Q 011216 313 ------------MGH----LEGITFIDSRGD----GRYLISNGKDQAIKLWDI 345 (491)
Q Consensus 313 ------------~~~----~~~i~~i~~sp~----~~~l~~~~~dg~i~iwd~ 345 (491)
.+. ...+..|+++|+ ++.|.-....+. ++|.+
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V 251 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSV 251 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEE
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEE
Confidence 111 246788888887 677766655442 44444
No 378
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=52.31 E-value=1.3e+02 Score=27.06 Aligned_cols=212 Identities=10% Similarity=0.026 Sum_probs=110.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECC---------CCeEEEEEeeccCCceeEEEeE-eC--CCCceEEEEecCC
Q 011216 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVE---------RGWKIQKDILAKSLRWTVTDTS-LS--PDQRHLVYASMSP 191 (491)
Q Consensus 124 ~~~v~~~~~s~dg~~l~~~~~dg~i~vw~~~---------~~~~~~~~~~~~~~~~~v~~l~-~s--p~~~~l~~~~~dg 191 (491)
.+.+..+........|+..+..|.+.-+... .|..+...+.... ...|.++. +. .++.+|+.++..|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 4455555555555677777788876655532 1222111111222 22455443 33 2456899999999
Q ss_pred eEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCCCCEEEEEecCCeEEEEECCCCe---------ee
Q 011216 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------LS 262 (491)
Q Consensus 192 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~~~~l~~~~~dg~i~vwd~~~~~---------~~ 262 (491)
.++...+..-...... ....+.+.. ...+..+........++..+.+|.+..++...-. ..
T Consensus 124 ~vKrt~l~e~~~~~~~----G~~ai~L~~------~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~ 193 (370)
T 3l6v_A 124 TVKKTPLSEFAFRLAR----GKIAINLDE------GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRG 193 (370)
T ss_dssp EEEEEEGGGGCSCCTT----CEESSCCCT------TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred eEEEeEHHHhhcccCC----ceEEEEeCC------CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeee
Confidence 9999886532221100 000011100 1144455555556678888899988888764321 11
Q ss_pred EEEeccCCCeEEEEEecC----------------------------------CCCEEEEEeCCCeEEEEeCccccCCCc-
Q 011216 263 LRILAHTSDVNTVCFGDE----------------------------------SGHLIYSGSDDNLCKVWDRRCLNVKGK- 307 (491)
Q Consensus 263 ~~~~~~~~~v~~i~~~~~----------------------------------~~~~l~s~s~dg~i~iwd~~~~~~~~~- 307 (491)
..+ .....|.++...+. ++..+++.+..|..+...+......+.
T Consensus 194 i~L-~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg 272 (370)
T 3l6v_A 194 IRL-AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRG 272 (370)
T ss_dssp CCC-CTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSCCBCTT
T ss_pred EEe-CCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccC
Confidence 112 22345655555431 456789999999999888753322221
Q ss_pred ----ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 308 ----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 308 ----~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
....+....+.+..+.+..+...++..+..|.+.-..+..
T Consensus 273 ~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 273 TQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred CcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 1122222334455544434445566666777766665544
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=51.35 E-value=52 Score=31.78 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=40.1
Q ss_pred eeEEEeEeCCCCceEEEEec------------CCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcC
Q 011216 170 WTVTDTSLSPDQRHLVYASM------------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST 237 (491)
Q Consensus 170 ~~v~~l~~sp~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~ 237 (491)
.....|.|.++|.+.+.... ...|..++..+++...+...+. ...++.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~---------------~aEpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---------------GCEVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT---------------TCEEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC---------------CccccCCEECC
Confidence 35778999999987663321 1256666666666544432111 11689999999
Q ss_pred CCCEEEEEe
Q 011216 238 DGRELVAGS 246 (491)
Q Consensus 238 ~~~~l~~~~ 246 (491)
|++.|+++-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999888764
No 380
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.10 E-value=95 Score=30.00 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCEEEEEEC------------CCeEEEEECCCCeEEEEEeeccCCceeEEEeEeCCCCceEEEEe
Q 011216 125 SRAYVSQFSADGSLFVAGFQ------------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS 188 (491)
Q Consensus 125 ~~v~~~~~s~dg~~l~~~~~------------dg~i~vw~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~ 188 (491)
+.-..|+|+++|.+.+.-.. ...|..++..+++ +...... .....++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe-l~~fl~~-P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVG-PIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCC-EEEEEEC-CTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCe-EEEEEeC-CCCccccCCEECCCCCEEEEEE
Confidence 44578999999987663211 2256667766664 3333321 2223689999999999888764
No 381
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=40.53 E-value=51 Score=31.67 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=44.2
Q ss_pred CceEEEEEcCCCC--EEEEEECCCeEEEEECCCC--e-EEEEEeeccCCceeEE-EeEeCCCCceEEEEecCCeEEE
Q 011216 125 SRAYVSQFSADGS--LFVAGFQASQIRIYDVERG--W-KIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHI 195 (491)
Q Consensus 125 ~~v~~~~~s~dg~--~l~~~~~dg~i~vw~~~~~--~-~~~~~~~~~~~~~~v~-~l~~sp~~~~l~~~~~dg~i~i 195 (491)
...++++....+. .+..|+.+|.|.-..+..+ . .+...........+|. .|.+++++.+|++++..+.++|
T Consensus 400 ~~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 400 DRLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp SCEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred cceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3566777665444 4668899998765555422 1 1222222222234775 8999999999999887765554
No 382
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=39.13 E-value=1.8e+02 Score=24.81 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=91.0
Q ss_pred eEEEeEeCCCCceEEEEecCCeEEEEEC---CCCccccccceeccccccccccCCCCCceecEEEEEEcC-CCCEEEEEe
Q 011216 171 TVTDTSLSPDQRHLVYASMSPIVHIVDV---GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGS 246 (491)
Q Consensus 171 ~v~~l~~sp~~~~l~~~~~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~-~~~~l~~~~ 246 (491)
.+..+.......+|+.-+..|.++-..+ ....... + +.. ...|..+.... +..+++..+
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~----------l-l~~------~e~i~~v~~~~~~~~~~v~~T 87 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS----------L-KSR------EEKIVGAFIREKFGNRLLLAT 87 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC----------C-SST------TCCEEEEEEGGGSCSEEEEEE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc----------c-CCC------CCEEEEEECCcCCCCEEEEEe
Confidence 4555554445556777777886654432 2111111 1 110 11455554422 567899999
Q ss_pred cCCeEEEEECCCCe------eeEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccC-----CCcceeeeccc
Q 011216 247 SDDCIYVYDLEANK------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-----KGKPAGVLMGH 315 (491)
Q Consensus 247 ~dg~i~vwd~~~~~------~~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~ 315 (491)
.+|.++-..+..-. ....+. ..+.+..+... .....++..+..|.+..+....... .+.....+..
T Consensus 88 ~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~-~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~- 164 (276)
T 3no0_A 88 KKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASS-VDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK- 164 (276)
T ss_dssp TTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEEC-CSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-
T ss_pred CCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEe-CCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-
Confidence 99999999875431 112232 23455555554 4556788888999988887643221 1222222322
Q ss_pred cccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 316 LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 316 ~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
.+.|..+...+++..++..+..|.++...+...
T Consensus 165 ~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 165 NDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 355666655556678888899999988887653
No 383
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.13 E-value=1.9e+02 Score=25.11 Aligned_cols=202 Identities=9% Similarity=0.026 Sum_probs=105.6
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEE------EeeccCCceeEEEeEeCCCCceEEEEecCCeEEEEECC---CCccc
Q 011216 134 ADGSLFVAGFQASQIRIYDVERGWKIQK------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG---SGTME 204 (491)
Q Consensus 134 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~------~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~i~iwd~~---~~~~~ 204 (491)
|+..++++.+.+|.|+--.+.+-..... ...... ...+..+........|+..+..|.+.-+... .....
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 4556788899999998776643111000 001111 1234444444455566777778876655542 21110
Q ss_pred cccceeccccccccccCCCCCceecEEEEEEc---CCCCEEEEEecCCeEEEEECCC-------CeeeEEEeccCCCeEE
Q 011216 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFS---TDGRELVAGSSDDCIYVYDLEA-------NKLSLRILAHTSDVNT 274 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s---~~~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~ 274 (491)
. .-......+.+.. ...|.++..- .++.+++..+.+|.++-..+.. +.....+..+ +.+..
T Consensus 80 a--~G~~i~~~l~l~~------~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~ 150 (307)
T 1zi0_A 80 A--RGRPIVNLLPLEQ------DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIG 150 (307)
T ss_dssp S--CCEEGGGTSCCCT------TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEE
T ss_pred C--CCeEhhhccCCCC------CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEE
Confidence 0 0000001111111 1145555432 3556799999999999987742 1122223333 55666
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCccccCCCc-----ceeeeccccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCC
Q 011216 275 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-----PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 347 (491)
Q Consensus 275 i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~ 347 (491)
+... .+...++..+.+|.+..++.......+. ....+. ..+.|.++...+++..+++.+..|.++-.++..
T Consensus 151 ~~~~-~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 151 VDLT-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEe-CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 5555 4455677888889888887653222211 111222 235566666555566788888899888887654
No 384
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=33.23 E-value=4e+02 Score=26.97 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=73.4
Q ss_pred eeEEEeEeCCCC-ceEEEEecCCeEEEEECCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEec
Q 011216 170 WTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSS 247 (491)
Q Consensus 170 ~~v~~l~~sp~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~ 247 (491)
+.|.+|+++|.. ..++++...+.|...+=.......+...... . .+ ....+.++++.|. ...++++..
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~-~--~~-------~~~~i~~ia~dp~~~~~i~~~~g 84 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEA-Q--DM-------NIMGTESIALDPNNPDRLYLAQG 84 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCG-G--GG-------GGCSEEEEEEETTEEEEEEEEEC
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCc-c--cc-------cCCceeEEEECCCCCCEEEEEeC
Confidence 479999999964 5566666666665554222222211110000 0 00 1126899999984 344544432
Q ss_pred C------CeEEEEECCCCeeeEEEec--c-----C--CCeEEEEEecCCCCEEEEEeCCCeEEEEeCccccCCCcceeee
Q 011216 248 D------DCIYVYDLEANKLSLRILA--H-----T--SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 312 (491)
Q Consensus 248 d------g~i~vwd~~~~~~~~~~~~--~-----~--~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 312 (491)
. +.| +...+.++.-..+.. . . ..+..+++.|.+.+.++.+...+.| |--.......+.+...
T Consensus 85 ~~~~~~~~~v-~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~ 161 (789)
T 1sqj_A 85 RYVGDEWAAF-YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSI 161 (789)
T ss_dssp SCTTSSCCEE-EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTS
T ss_pred ccCCCcccEE-EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccC
Confidence 2 322 223333432222211 0 1 1356788876666677777644443 3222111122222211
Q ss_pred c---cccccEEEEEEcCC-CCEEEEeeCC
Q 011216 313 M---GHLEGITFIDSRGD-GRYLISNGKD 337 (491)
Q Consensus 313 ~---~~~~~i~~i~~sp~-~~~l~~~~~d 337 (491)
. .....+..+.++|. +..++++..+
T Consensus 162 ~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 162 PDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred ccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1 11245788889884 4455555544
No 385
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=30.62 E-value=4.3e+02 Score=26.57 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=37.9
Q ss_pred CCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeecc-----C----CceeEEEeEeCCC-CceEEEE
Q 011216 123 TTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAK-----S----LRWTVTDTSLSPD-QRHLVYA 187 (491)
Q Consensus 123 h~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~----~~~~v~~l~~sp~-~~~l~~~ 187 (491)
-.+.|.+++++|.. ..+.++...|.|...+ +.++......... . ....+.++++.|. ...++++
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~ 93 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLA 93 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEE
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEE
Confidence 46799999999976 5566666666554433 3444444433211 0 1235899999984 3444443
No 386
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=26.73 E-value=2.9e+02 Score=23.26 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=56.3
Q ss_pred EEEEEecCCeEEEEECCCCee-eEEEeccCCCeEEEEEecCCCCEEEEEeCCCeEEEEeCccc---cCCCccee---eec
Q 011216 241 ELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL---NVKGKPAG---VLM 313 (491)
Q Consensus 241 ~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~---~~~ 313 (491)
.+++.+.+|.|+--....-.. ...+.. .+.+..+... .....|+..+..|.++-+..... ...+.++. .+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~-~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKG-KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEE-ETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEe-CCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 455667777776555433111 112222 2344444443 23345566677888766554322 22233221 122
Q ss_pred cccccEEEEEEcCCCCEEEEeeCCCcEEEeeCCCC
Q 011216 314 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 348 (491)
Q Consensus 314 ~~~~~i~~i~~sp~~~~l~~~~~dg~i~iwd~~~~ 348 (491)
..+.|.++....++.+|+..+..|.++...+...
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGG
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHh
Confidence 2356666654345677888999999999887653
No 387
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=24.92 E-value=1.5e+02 Score=28.05 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=42.2
Q ss_pred ceEEEEEcC----CCC--EEEEEECCCeEEEEECCCCe-------EEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 126 RAYVSQFSA----DGS--LFVAGFQASQIRIYDVERGW-------KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 126 ~v~~~~~s~----dg~--~l~~~~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
..+.++... |++ .+..|+.+|.|.-.-+.... .+...+.......+|..|.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666543 354 46688999977544332211 11111122123458899999999999999998876
Q ss_pred EEE
Q 011216 193 VHI 195 (491)
Q Consensus 193 i~i 195 (491)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 388
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=23.69 E-value=2.1e+02 Score=27.05 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=37.4
Q ss_pred cEEEEEecCCeEEEEECC-Ccc-------EEEEecC--CCCCeeeeEecCCCCeEEEEECCCcEEE
Q 011216 411 KYIYTGSHDSCVYVYDLV-SGE-------QVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 411 ~~l~~g~~dg~i~iwd~~-~~~-------~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~Dg~i~i 466 (491)
..++.|+.+|.|.=.-+. .+. .+..+.. ...+|..+.++++..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 467789999976433322 211 2233332 3578999999999999999998886654
No 389
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=23.30 E-value=2.5e+02 Score=27.77 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=36.9
Q ss_pred cEEEEEecCCeEE-EEECCCcc-------EEEEec--CCCCCeeeeEecCCCCeEEEEECCCcEEE
Q 011216 411 KYIYTGSHDSCVY-VYDLVSGE-------QVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 466 (491)
Q Consensus 411 ~~l~~g~~dg~i~-iwd~~~~~-------~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~Dg~i~i 466 (491)
..++.|+.+|.|. +.-...+. .+..++ ....+|..+.++++...|++++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 4677899999764 33221111 222222 35678999999999999999988876554
No 390
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.51 E-value=2.6e+02 Score=27.63 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=42.3
Q ss_pred ceEEEEE----cCCCC--EEEEEECCCeEE-EEECCCC------eEEEEEeeccCCceeEEEeEeCCCCceEEEEecCCe
Q 011216 126 RAYVSQF----SADGS--LFVAGFQASQIR-IYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (491)
Q Consensus 126 ~v~~~~~----s~dg~--~l~~~~~dg~i~-vw~~~~~------~~~~~~~~~~~~~~~v~~l~~sp~~~~l~~~~~dg~ 192 (491)
..+.++. .++|+ .+..|+.+|.|. +.....+ ..+...........+|..|.+++++++|.+++.++.
T Consensus 413 ~lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V 492 (667)
T 4gz8_A 413 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 492 (667)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEE
Confidence 3455554 34554 466889999874 3322221 111112222234457899999999999999998876
Q ss_pred EEE
Q 011216 193 VHI 195 (491)
Q Consensus 193 i~i 195 (491)
++|
T Consensus 493 ~kV 495 (667)
T 4gz8_A 493 AQL 495 (667)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 391
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=20.46 E-value=6.7e+02 Score=25.29 Aligned_cols=159 Identities=14% Similarity=0.038 Sum_probs=75.7
Q ss_pred CCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEeeccC----CceeEEEeEeCCCC-ceEEEEecCCe----E
Q 011216 124 TSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKS----LRWTVTDTSLSPDQ-RHLVYASMSPI----V 193 (491)
Q Consensus 124 ~~~v~~~~~s~dg-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~~~~v~~l~~sp~~-~~l~~~~~dg~----i 193 (491)
...|.+++++|.. ..+.+++..+.|...+ +.+........... ....|.+|++.|.. ..++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 4689999999963 4566677667665544 34444444322111 12369999999853 44444432211 2
Q ss_pred EEEE-CCCCccccccceeccccccccccCCCCCceecEEEEEEcCC-CCEEEEEecCCeEEEEECCCCeeeEEEec----
Q 011216 194 HIVD-VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILA---- 267 (491)
Q Consensus 194 ~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~i~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---- 267 (491)
.||. .+.|+.-....... ......... ..+..+++.|. ...++++...+.|. ...+.++.-..+..
T Consensus 93 ~v~~S~DgG~TW~~~~~~~-----~~~~~~~~~--~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~ 164 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPF-----PMGANDMGR--NNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDA 164 (789)
T ss_dssp EEEEESSTTSEEEEEECSS-----CCCTTSTTT--TSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCC
T ss_pred EEEEECCCCCcceeccCCc-----ccCccCCCc--cceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccc
Confidence 3333 33333222111100 000000000 02445777774 34566665344332 22223332222211
Q ss_pred --cCCCeEEEEEecCCCCEEEEEeCC
Q 011216 268 --HTSDVNTVCFGDESGHLIYSGSDD 291 (491)
Q Consensus 268 --~~~~v~~i~~~~~~~~~l~s~s~d 291 (491)
....+..+.+.|.++..++.+..+
T Consensus 165 ~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 165 FTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 124578888876666666666654
Done!