BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011220
         (490 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
           Resolution
          Length = 499

 Score = 32.3 bits (72), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 130 DGFGRQASALNGVVPENLVPAWHWTDQFVLEIIFHRRILNH 170
           DGF RQA  +NGV P  LV A +  D+F L +I    + NH
Sbjct: 18  DGFSRQAVVVNGVTPGPLV-AGNIGDRFQLNVI--DNLTNH 55


>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
           Resolution
          Length = 499

 Score = 32.3 bits (72), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 130 DGFGRQASALNGVVPENLVPAWHWTDQFVLEIIFHRRILNH 170
           DGF RQA  +NGV P  LV A +  D+F L +I    + NH
Sbjct: 18  DGFSRQAVVVNGVTPGPLV-AGNIGDRFQLNVI--DNLTNH 55


>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
 pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
           Low Dose Of Ionization Radiation
          Length = 499

 Score = 32.3 bits (72), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 130 DGFGRQASALNGVVPENLVPAWHWTDQFVLEIIFHRRILNH 170
           DGF RQA  +NGV P  LV A +  D+F L +I    + NH
Sbjct: 18  DGFSRQAVVVNGVTPGPLV-AGNIGDRFQLNVI--DNLTNH 55


>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
          Length = 499

 Score = 32.3 bits (72), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 130 DGFGRQASALNGVVPENLVPAWHWTDQFVLEIIFHRRILNH 170
           DGF RQA  +NGV P  LV A +  D+F L +I    + NH
Sbjct: 18  DGFSRQAVVVNGVTPGPLV-AGNIGDRFQLNVI--DNLTNH 55


>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
           (Atglyr1)
          Length = 310

 Score = 31.2 bits (69), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 85  VPRVSDQCELGKIYVYDLPKALNEDLLQNCHELNPWG---SRCDMLLNDG 131
           VPR S   E+G + +  + KA++ +LL+N  ++  W    S+CD L+  G
Sbjct: 15  VPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG 64


>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
           Acidocaldarius
 pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
           Acidocaldarius Co- Crystallized With Its Ligand
          Length = 453

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 15/50 (30%)

Query: 251 GSSCIYKKAMRNITRLLIERNPWD--------------YFD-VGVPYPTG 285
           GSS  Y+ + R +  LL++  PW+              +FD +G+PYP G
Sbjct: 18  GSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKG 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,755,627
Number of Sequences: 62578
Number of extensions: 574076
Number of successful extensions: 1134
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 8
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)