BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011223
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S2T0|GRIP_ARATH Protein GRIP OS=Arabidopsis thaliana GN=GRIP PE=1 SV=2
Length = 788
Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 115/267 (43%), Gaps = 43/267 (16%)
Query: 16 EIDV--QTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKR 73
EIDV QT + ++E RE +E A+ + E S KF++++ + IK
Sbjct: 97 EIDVEKQTRVAAEQALEHLREAYSE----------ADAKSQEYSSKFSQVEQKLDQEIKE 146
Query: 74 RDES--------TRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDG 125
RDE TR A + +EI + D L EVN + Q + + +
Sbjct: 147 RDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELER 206
Query: 126 SRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAV 185
+R Q +E KA D R ++ ++ + L IE++ G + P+ K L
Sbjct: 207 TRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQ----------PKENKIETLQQS 256
Query: 186 VYGVIKRTNEIVEELVGQIDATAKSRNDVREQM---EQRNFEIAIEVSELEATISGLREE 242
+ ++I+E+L Q+ A + + ++ Q+N E LEA + E
Sbjct: 257 LLD----KDQILEDLKKQLQAVEERKQIAVTELSAKHQKNLEG------LEAQVVDALSE 306
Query: 243 VAKKSSFIENLEKSLIEKDEKVAEIES 269
K + I +L+ L EK+ K+AE+E+
Sbjct: 307 RDKAAETISSLQVLLAEKESKIAEMEA 333
>sp|Q05070|Y4393_NOSS1 Uncharacterized protein alr4393 OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=alr4393 PE=4 SV=2
Length = 496
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 96/205 (46%), Gaps = 27/205 (13%)
Query: 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREK 88
V ++++ +AEL R+A + + +L + RL A A ++I++RD R +A+ ++
Sbjct: 159 VTQYQKAIAELQSVYNQRKALQGAVEQLKTERRRLYAEAKKAIEQRDRELANRQQAIEQR 218
Query: 89 EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSA 148
+ L + + + +D+ + QLD++ + R+ +Q +EV ++ E+E
Sbjct: 219 DRELANRQQALQQ-------RDQKISQLDKIIQNRNLEIAQREEVIAKRESRLKELETQQ 271
Query: 149 HMLVTGIEKISGKVSNFKNFSAG--GLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206
L + ++ ++++ G L R Q V+ + RTN++
Sbjct: 272 DYLEQEVARLEKYYQSYRDLRLGKLALVRGQ-------VLASAVIRTNQV---------- 314
Query: 207 TAKSRNDVREQMEQRNFEIAIEVSE 231
A +R + + +++ N ++E+SE
Sbjct: 315 -AATRQIIIQLLQEANRNASLELSE 338
>sp|Q5XVA8|Y3905_ARATH Uncharacterized protein At3g49055 OS=Arabidopsis thaliana
GN=At3g49055 PE=2 SV=1
Length = 480
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 25/201 (12%)
Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
LL D +YV + D++ +I+ +++ N+ P+E + + +SI
Sbjct: 110 LLSDIADYVRSMEDRLSKLIRCLNEENV-----------PEE-ERGRKLETKEYNSKSIL 157
Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPS----- 408
+L + VV K + ++ L+ +V L +E I LLR+AL ++ + +
Sbjct: 158 ELVKEVVTKLETFQESTKKKKMELSRSVEFLEEENRDINVLLRAALFEKQTAEKQLKEMN 217
Query: 409 -SKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
K L ++A GL+ G F + V S + N EE+ + A+E
Sbjct: 218 DQKGLALLQIAGRGLQRIGFGFGLGE-----SVEESSETGNIANEEEEN--GVVIAIEKT 270
Query: 468 VKASQLEIVELRHSVEELRVE 488
+K + E+ +L+ S+EE R+E
Sbjct: 271 MKKLRQEVSQLKISLEESRLE 291
>sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1
Length = 1959
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 12/138 (8%)
Query: 10 LSDVEGEIDVQ--TSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALA 67
L D+ ++D Q T S+ + ++F ++LAE +N + + +E+ +R +A A
Sbjct: 1422 LDDIAVDLDHQRQTVSNLEKKQKKFDQLLAE----------EKNISAKYAEERDRAEAEA 1471
Query: 68 HESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSR 127
E + R +EA+ +K E+ R N + TE+ ++ +KD+V K + E+ KA+
Sbjct: 1472 REKETKALSLARALEEAIEQKAELERVNKQFRTEMEDLMSSKDDVGKSVHELEKAKRALE 1531
Query: 128 SQLDEVTKAKDGLRSEIE 145
Q++E+ + L E++
Sbjct: 1532 QQVEEMKTQLEELEDELQ 1549
>sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup211 PE=1 SV=1
Length = 1837
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 206 ATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVA 265
++ KS N+ +Q + +N + + ++L+ +S +EV KK + I++L+ +L +V
Sbjct: 116 SSLKSVNEALKQAQDQNLK---QTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVL 172
Query: 266 EIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDD-IIKIVDDGNLDQS 324
E++ E L YE +L+ L +L + ++S+ V+D ++ + + +L++S
Sbjct: 173 ELQHTQQEKASLQTNYEFELQKLTQKNSILENNNTWLSRELQGVNDKLLSLHQEASLEKS 232
Query: 325 GLSESL---------------FLPQ---ETDME-ENIRASLAGMESIYQLTRIVVEK 362
LS L L Q E+++ +NI A L+ M Y+ +++ EK
Sbjct: 233 QLSSQLSDAVLEKDALQRKVSSLSQQFTESNLRYQNIVAELSEMRKQYEFSQVSFEK 289
>sp|O18740|K1C9_CANFA Keratin, type I cytoskeletal 9 OS=Canis familiaris GN=KRT9 PE=3
SV=1
Length = 786
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 26/253 (10%)
Query: 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303
A + + +++L L +KV +E EL + E+ DK + HR D Y
Sbjct: 135 ADEKTTMQDLNSRLASYLDKVQALEDANKELESKIREWYDKQGSRTFHR----DYSPYYD 190
Query: 304 KIHDQVDDIIKIVDDGN---LDQSGLSESLF-LPQETDMEENIRASLAGMESIYQLTRIV 359
I D + I+ I D N LD +L + + D+E N+R LA I L +++
Sbjct: 191 TIEDLKNQIVNITADNNKTLLDLDNTRMTLDDIRMKCDIENNLR--LAVNADINGLRKVL 248
Query: 360 VEKTRDLVQKKS---REVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFK 416
DL +KS +SL E + L K E +S L S ++V+ ++
Sbjct: 249 ----DDLTMQKSDLEMHYESLQEELIALKKNHEDEMSQLTGQNSGDVNVEMNAAPGRDLT 304
Query: 417 VAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIV 476
N +RE ++ ++ + + + + M E E+ + +E ++ E+
Sbjct: 305 KILNDMRE-----EYERISAKNRKDIEEQYETQMSQMEQEVMSSGQEME----SNHKEVT 355
Query: 477 ELRHSVEELRVEF 489
+LRHS++E+ +E
Sbjct: 356 QLRHSIQEMEIEL 368
>sp|P0CK98|CCD39_DANRE Coiled-coil domain-containing protein 39 (Fragment) OS=Danio rerio
GN=ccdc39 PE=2 SV=1
Length = 604
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 133/304 (43%), Gaps = 68/304 (22%)
Query: 198 EELVGQIDATAKSRNDVREQMEQRNFEI---AIEVSELEATISGLREEVAKKSSFIENLE 254
+EL+ Q + T EQM +R+ +I A+ ++EL TI + + ++ F+E
Sbjct: 221 QELISQWENTI-------EQMRKRDQDIQQCAMMLAELNQTIREKNDLIKERKDFLEREI 273
Query: 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLL---VDQL--------NYVS 303
++ E + + +E Q LRQ + E E + L+ +L VD+ + +S
Sbjct: 274 ENNKELERNIGTVERQAFRLRQQLQEEEKNQRRLQDEVEVLKGTVDRTATDVETSRSQLS 333
Query: 304 KIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVE-- 361
+ + D V++ L + L E L + E A L G E Q+ +++ E
Sbjct: 334 SMKKDIQDKTTKVEEAQLHNAALEEKLRMVTE--------AVLNGEEQAAQMEQLLREQE 385
Query: 362 -----------KTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK 410
+ ++L+ KKS+EV++L + + E + R+ALS ++D
Sbjct: 386 QNIKEIDSQLLRQKELLFKKSQEVQALRDKEKNVTAE----ICATRTALS---NLDS--- 435
Query: 411 TNELFKVAENGLREAGI----DFKFS-----KLLSDGKVPVSDDKANAMETEEDEIYNLA 461
+L K+ +N L++ I DF+ L GKV + KA E ++ +LA
Sbjct: 436 --KLRKLDQNFLQQQMIISNQDFQIQMLERKTLHLQGKVNTEEKKA-----LEKKVADLA 488
Query: 462 GALE 465
+LE
Sbjct: 489 ASLE 492
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,303,394
Number of Sequences: 539616
Number of extensions: 6665554
Number of successful extensions: 44911
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 2423
Number of HSP's that attempted gapping in prelim test: 36029
Number of HSP's gapped (non-prelim): 7467
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)