Query 011223
Match_columns 490
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 22:57:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 97.3 0.55 1.2E-05 54.4 35.1 112 189-304 801-912 (1163)
2 PHA02562 46 endonuclease subun 96.7 0.94 2E-05 47.1 25.9 95 187-289 298-392 (562)
3 TIGR02168 SMC_prok_B chromosom 96.7 1.4 3.1E-05 48.6 27.9 30 371-400 999-1028(1179)
4 PF10174 Cast: RIM-binding pro 96.5 2 4.3E-05 49.0 26.9 184 95-316 109-292 (775)
5 PRK02224 chromosome segregatio 96.4 2.2 4.8E-05 47.2 36.1 96 236-333 358-463 (880)
6 TIGR02168 SMC_prok_B chromosom 95.6 4.7 0.0001 44.6 26.2 8 307-314 506-513 (1179)
7 KOG0994 Extracellular matrix g 95.6 7.6 0.00017 46.8 26.8 219 29-289 1421-1646(1758)
8 KOG0996 Structural maintenance 95.1 9.8 0.00021 45.6 25.3 153 159-314 751-921 (1293)
9 COG1196 Smc Chromosome segrega 95.0 9.5 0.00021 44.7 28.1 51 37-87 165-215 (1163)
10 TIGR02169 SMC_prok_A chromosom 95.0 7.7 0.00017 43.4 32.1 51 30-80 674-724 (1164)
11 PRK11637 AmiB activator; Provi 94.8 1.4 3.1E-05 45.5 16.3 85 197-281 168-252 (428)
12 KOG0161 Myosin class II heavy 94.1 22 0.00048 44.7 30.5 37 242-278 1267-1303(1930)
13 PRK02224 chromosome segregatio 94.0 13 0.00028 41.5 35.6 47 98-144 382-428 (880)
14 TIGR00606 rad50 rad50. This fa 93.9 18 0.00038 43.0 34.5 114 194-335 576-691 (1311)
15 PRK04863 mukB cell division pr 92.9 9.9 0.00022 46.3 20.5 30 190-219 309-338 (1486)
16 TIGR02169 SMC_prok_A chromosom 92.7 20 0.00044 40.2 31.3 37 30-66 681-717 (1164)
17 TIGR00606 rad50 rad50. This fa 91.8 34 0.00073 40.8 28.1 54 67-120 876-929 (1311)
18 PF03148 Tektin: Tektin family 91.7 18 0.0004 37.6 20.0 187 98-293 121-348 (384)
19 KOG0161 Myosin class II heavy 90.8 56 0.0012 41.4 33.2 236 31-290 1302-1547(1930)
20 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.7 2.4 5.2E-05 37.7 9.5 71 230-303 62-132 (132)
21 PF10174 Cast: RIM-binding pro 89.4 47 0.001 38.4 21.1 147 100-270 436-598 (775)
22 PRK09039 hypothetical protein; 89.0 10 0.00022 39.0 13.7 153 188-348 74-245 (343)
23 PF00038 Filament: Intermediat 88.6 26 0.00056 34.3 24.7 88 230-317 205-296 (312)
24 PF10481 CENP-F_N: Cenp-F N-te 88.0 8.9 0.00019 39.8 12.3 138 29-181 17-161 (307)
25 PF00261 Tropomyosin: Tropomyo 87.4 29 0.00063 33.6 17.9 100 202-308 67-166 (237)
26 PF11559 ADIP: Afadin- and alp 86.8 23 0.00049 31.8 13.0 54 188-245 31-84 (151)
27 PF04065 Not3: Not1 N-terminal 86.3 38 0.00083 33.9 15.8 130 160-332 94-230 (233)
28 PRK04778 septation ring format 85.5 36 0.00078 37.1 16.0 198 181-392 268-496 (569)
29 PF12128 DUF3584: Protein of u 84.8 94 0.002 37.0 37.4 56 109-164 492-561 (1201)
30 cd07596 BAR_SNX The Bin/Amphip 84.4 23 0.00049 31.9 11.9 65 213-285 104-168 (218)
31 KOG0612 Rho-associated, coiled 83.6 48 0.001 40.3 16.8 64 253-316 492-555 (1317)
32 KOG0977 Nuclear envelope prote 83.5 82 0.0018 35.3 21.5 161 77-304 30-190 (546)
33 KOG0980 Actin-binding protein 83.5 19 0.00041 42.2 13.3 128 28-166 387-521 (980)
34 PF01576 Myosin_tail_1: Myosin 83.3 0.36 7.8E-06 54.7 0.0 251 29-321 524-792 (859)
35 PRK11637 AmiB activator; Provi 82.9 64 0.0014 33.6 20.4 22 376-397 230-251 (428)
36 PF07888 CALCOCO1: Calcium bin 82.3 92 0.002 35.0 21.2 88 202-289 143-233 (546)
37 KOG0996 Structural maintenance 81.0 1.4E+02 0.0031 36.5 19.8 173 93-279 398-573 (1293)
38 KOG0971 Microtubule-associated 80.7 1.4E+02 0.003 36.0 27.6 289 31-387 232-554 (1243)
39 PF08317 Spc7: Spc7 kinetochor 80.4 32 0.00068 34.9 12.4 59 227-285 209-267 (325)
40 KOG4643 Uncharacterized coiled 80.4 1.1E+02 0.0023 37.1 17.8 189 250-473 490-697 (1195)
41 KOG0977 Nuclear envelope prote 77.5 1.3E+02 0.0028 33.9 22.3 204 49-304 104-331 (546)
42 KOG4643 Uncharacterized coiled 76.1 1.9E+02 0.0042 35.1 18.8 100 358-485 395-500 (1195)
43 PF04912 Dynamitin: Dynamitin 74.7 86 0.0019 32.6 13.9 76 290-384 312-387 (388)
44 PRK03918 chromosome segregatio 74.7 1.5E+02 0.0032 33.2 28.2 10 17-26 439-448 (880)
45 PF04156 IncA: IncA protein; 74.5 16 0.00036 33.4 7.9 75 214-288 96-170 (191)
46 PF08614 ATG16: Autophagy prot 74.0 18 0.0004 33.9 8.2 33 253-285 107-139 (194)
47 PRK12704 phosphodiesterase; Pr 73.2 25 0.00055 38.3 10.1 53 228-280 83-135 (520)
48 KOG0250 DNA repair protein RAD 72.8 71 0.0015 38.4 14.0 145 173-321 636-811 (1074)
49 PF12329 TMF_DNA_bd: TATA elem 72.0 29 0.00063 28.8 8.0 52 252-303 2-53 (74)
50 PF05667 DUF812: Protein of un 70.7 1.8E+02 0.0039 32.8 15.9 54 343-396 443-512 (594)
51 PRK03918 chromosome segregatio 70.2 1.9E+02 0.0041 32.4 31.6 34 34-67 204-237 (880)
52 PF06419 COG6: Conserved oligo 70.1 94 0.002 34.5 13.7 161 206-400 13-198 (618)
53 COG3883 Uncharacterized protei 68.2 1.5E+02 0.0033 30.5 15.8 68 230-300 41-108 (265)
54 COG4942 Membrane-bound metallo 66.6 62 0.0013 35.2 11.1 77 228-304 46-126 (420)
55 TIGR03185 DNA_S_dndD DNA sulfu 66.2 2.2E+02 0.0047 31.6 24.6 26 96-121 226-251 (650)
56 PF04111 APG6: Autophagy prote 64.1 60 0.0013 33.3 10.0 85 194-278 8-94 (314)
57 PLN03229 acetyl-coenzyme A car 64.0 64 0.0014 37.4 11.1 95 27-121 459-572 (762)
58 PF09730 BicD: Microtubule-ass 63.5 2.4E+02 0.0052 32.7 15.4 71 230-310 394-464 (717)
59 KOG0933 Structural maintenance 63.3 3.5E+02 0.0076 33.0 21.5 101 221-321 288-388 (1174)
60 PF11932 DUF3450: Protein of u 63.2 62 0.0014 31.4 9.6 64 212-275 34-97 (251)
61 smart00721 BAR BAR domain. 61.8 1.3E+02 0.0029 27.7 13.5 103 189-317 121-238 (239)
62 smart00787 Spc7 Spc7 kinetocho 61.8 1.5E+02 0.0032 30.7 12.4 70 228-300 205-274 (312)
63 PF08614 ATG16: Autophagy prot 61.3 48 0.0011 31.2 8.2 67 231-297 113-179 (194)
64 TIGR03319 YmdA_YtgF conserved 61.0 57 0.0012 35.6 9.8 50 229-278 78-127 (514)
65 TIGR03185 DNA_S_dndD DNA sulfu 60.4 2.7E+02 0.0059 30.8 25.6 15 298-312 481-495 (650)
66 PRK14140 heat shock protein Gr 60.3 1E+02 0.0022 30.0 10.4 28 262-289 44-71 (191)
67 TIGR02680 conserved hypothetic 59.7 4.1E+02 0.0088 32.6 22.7 31 124-154 364-394 (1353)
68 cd09238 V_Alix_like_1 Protein- 59.3 1.7E+02 0.0037 30.1 12.3 131 27-198 192-337 (339)
69 PF10805 DUF2730: Protein of u 59.0 53 0.0011 28.7 7.5 24 250-273 37-60 (106)
70 KOG0964 Structural maintenance 58.6 4.2E+02 0.0091 32.4 17.7 86 305-395 395-483 (1200)
71 PF07106 TBPIP: Tat binding pr 58.4 76 0.0017 29.0 8.8 19 271-289 118-136 (169)
72 PF01576 Myosin_tail_1: Myosin 57.4 3.5 7.5E-05 47.1 0.0 103 32-148 161-270 (859)
73 TIGR03319 YmdA_YtgF conserved 56.8 1.5E+02 0.0032 32.6 11.9 11 237-247 253-263 (514)
74 KOG1853 LIS1-interacting prote 56.7 2.6E+02 0.0057 29.4 16.7 124 251-396 55-181 (333)
75 PF10473 CENP-F_leu_zip: Leuci 56.4 59 0.0013 30.4 7.7 72 228-299 60-131 (140)
76 PRK12704 phosphodiesterase; Pr 55.7 1.6E+02 0.0034 32.5 12.0 23 138-160 127-149 (520)
77 PF04012 PspA_IM30: PspA/IM30 54.6 1.9E+02 0.0042 27.3 14.4 87 232-319 74-161 (221)
78 PF13166 AAA_13: AAA domain 54.5 3.3E+02 0.0071 29.9 15.3 37 184-220 366-402 (712)
79 PF07200 Mod_r: Modifier of ru 53.9 1.1E+02 0.0024 27.2 8.9 71 196-267 18-88 (150)
80 PF05384 DegS: Sensor protein 53.2 2.1E+02 0.0045 27.3 12.4 106 30-159 41-146 (159)
81 KOG0982 Centrosomal protein Nu 52.6 1E+02 0.0022 34.2 9.7 75 247-321 296-370 (502)
82 PF07889 DUF1664: Protein of u 52.6 1.9E+02 0.0042 26.7 11.0 74 206-289 36-123 (126)
83 TIGR02977 phageshock_pspA phag 52.4 1.6E+02 0.0035 28.3 10.3 71 230-300 73-144 (219)
84 PF10211 Ax_dynein_light: Axon 52.3 2.2E+02 0.0048 27.3 11.3 106 194-314 65-187 (189)
85 PRK09039 hypothetical protein; 52.0 1.8E+02 0.004 30.1 11.3 60 229-288 139-199 (343)
86 PF09730 BicD: Microtubule-ass 52.0 4.4E+02 0.0096 30.7 24.3 61 247-307 264-324 (717)
87 PRK14141 heat shock protein Gr 51.5 1.2E+02 0.0027 29.9 9.4 18 339-356 110-127 (209)
88 PRK14161 heat shock protein Gr 49.5 2.5E+02 0.0054 27.1 11.0 38 252-289 16-53 (178)
89 KOG0018 Structural maintenance 49.1 63 0.0014 38.9 8.1 73 228-300 677-749 (1141)
90 PF10186 Atg14: UV radiation r 48.9 1.9E+02 0.0042 27.5 10.2 77 230-306 73-160 (302)
91 COG2433 Uncharacterized conser 48.8 54 0.0012 37.3 7.3 62 228-293 451-512 (652)
92 PRK00106 hypothetical protein; 48.5 3E+02 0.0066 30.8 12.8 11 237-247 274-284 (535)
93 PF05483 SCP-1: Synaptonemal c 47.5 5.4E+02 0.012 30.3 17.7 158 232-408 592-775 (786)
94 KOG0250 DNA repair protein RAD 47.4 6.2E+02 0.013 31.0 24.9 101 187-292 220-325 (1074)
95 PF03915 AIP3: Actin interacti 47.1 1.7E+02 0.0037 31.7 10.5 79 191-269 172-267 (424)
96 PF15188 CCDC-167: Coiled-coil 47.1 42 0.00092 29.2 4.9 58 225-289 3-63 (85)
97 KOG4674 Uncharacterized conser 46.8 7.7E+02 0.017 31.9 35.8 52 32-83 29-84 (1822)
98 PRK03947 prefoldin subunit alp 45.6 2.2E+02 0.0047 25.3 11.0 82 272-354 9-108 (140)
99 PF06005 DUF904: Protein of un 45.4 1.8E+02 0.004 24.3 8.6 64 251-317 7-70 (72)
100 PF04859 DUF641: Plant protein 43.1 64 0.0014 29.9 5.8 50 229-285 75-124 (131)
101 KOG0244 Kinesin-like protein [ 42.7 1.8E+02 0.0039 34.7 10.4 79 199-280 488-566 (913)
102 PF05529 Bap31: B-cell recepto 41.7 1.3E+02 0.0027 28.1 7.6 76 180-269 107-182 (192)
103 COG0419 SbcC ATPase involved i 41.3 6.2E+02 0.013 29.3 30.6 23 47-69 339-361 (908)
104 PRK11546 zraP zinc resistance 40.7 64 0.0014 30.4 5.4 50 234-283 61-110 (143)
105 PF05278 PEARLI-4: Arabidopsis 40.7 1.2E+02 0.0026 31.4 7.8 43 261-303 213-255 (269)
106 KOG0980 Actin-binding protein 40.4 7.5E+02 0.016 30.0 24.6 75 192-269 470-547 (980)
107 KOG0612 Rho-associated, coiled 40.3 8.4E+02 0.018 30.5 31.1 82 37-119 451-534 (1317)
108 PF06810 Phage_GP20: Phage min 38.4 2.5E+02 0.0054 26.3 8.9 48 239-286 18-68 (155)
109 PF05266 DUF724: Protein of un 38.3 3.8E+02 0.0083 26.0 12.9 104 173-277 24-146 (190)
110 COG1579 Zn-ribbon protein, pos 38.2 2.8E+02 0.0061 28.1 9.8 43 260-302 87-129 (239)
111 PF10046 BLOC1_2: Biogenesis o 37.7 94 0.002 26.7 5.7 28 262-289 66-93 (99)
112 PF05010 TACC: Transforming ac 37.3 4.2E+02 0.0092 26.2 16.5 115 144-282 88-202 (207)
113 KOG3433 Protein involved in me 37.2 3.2E+02 0.007 27.4 9.7 75 231-305 85-159 (203)
114 PRK00106 hypothetical protein; 36.8 2.3E+02 0.0049 31.7 9.7 93 229-321 99-221 (535)
115 PF10303 DUF2408: Protein of u 36.5 2.1E+02 0.0047 26.2 8.0 96 97-206 4-99 (134)
116 PHA02562 46 endonuclease subun 36.2 5.5E+02 0.012 27.2 22.8 57 251-307 223-279 (562)
117 PF12126 DUF3583: Protein of u 36.1 1.7E+02 0.0037 31.1 8.1 97 212-321 59-156 (324)
118 COG2433 Uncharacterized conser 35.9 1.8E+02 0.0039 33.4 8.8 38 270-307 475-512 (652)
119 PRK10698 phage shock protein P 35.6 4.4E+02 0.0094 25.9 12.7 87 230-317 73-160 (222)
120 PRK02793 phi X174 lysis protei 35.6 1.6E+02 0.0034 24.4 6.4 49 232-280 6-54 (72)
121 PF07246 Phlebovirus_NSM: Phle 35.4 2.4E+02 0.0053 29.2 9.0 77 212-302 166-242 (264)
122 PF08826 DMPK_coil: DMPK coile 35.3 2.2E+02 0.0048 23.4 7.1 52 230-281 4-58 (61)
123 PF10805 DUF2730: Protein of u 35.1 1.9E+02 0.0042 25.2 7.3 35 264-298 67-101 (106)
124 PF12329 TMF_DNA_bd: TATA elem 34.7 2.3E+02 0.0049 23.6 7.2 29 261-289 39-67 (74)
125 PF05557 MAD: Mitotic checkpoi 34.4 24 0.00052 39.3 1.9 65 221-285 358-429 (722)
126 PF01166 TSC22: TSC-22/dip/bun 34.2 38 0.00083 28.0 2.6 30 268-297 13-42 (59)
127 TIGR03007 pepcterm_ChnLen poly 34.2 5.8E+02 0.013 26.9 16.2 24 96-119 164-187 (498)
128 KOG1962 B-cell receptor-associ 34.1 3.5E+02 0.0076 27.2 9.6 38 181-218 104-143 (216)
129 PF10186 Atg14: UV radiation r 33.6 4.3E+02 0.0093 25.2 15.9 60 140-199 138-213 (302)
130 PF14817 HAUS5: HAUS augmin-li 33.5 3E+02 0.0066 31.4 10.2 86 229-314 81-166 (632)
131 PF09304 Cortex-I_coil: Cortex 33.2 2.1E+02 0.0047 26.1 7.3 74 45-125 3-76 (107)
132 KOG0614 cGMP-dependent protein 32.8 76 0.0017 36.2 5.4 48 229-276 26-73 (732)
133 PRK14155 heat shock protein Gr 32.4 3.9E+02 0.0085 26.4 9.6 14 341-354 91-104 (208)
134 PRK14151 heat shock protein Gr 32.0 4.1E+02 0.009 25.5 9.5 85 261-364 26-119 (176)
135 TIGR01837 PHA_granule_1 poly(h 32.0 3.7E+02 0.0081 24.0 9.6 99 181-289 13-116 (118)
136 KOG4674 Uncharacterized conser 31.7 1.3E+03 0.028 30.1 37.1 179 213-405 395-605 (1822)
137 PF07888 CALCOCO1: Calcium bin 31.7 8.2E+02 0.018 27.8 28.8 79 29-114 142-220 (546)
138 KOG0963 Transcription factor/C 31.5 8.8E+02 0.019 28.2 15.1 198 221-490 206-407 (629)
139 PRK10884 SH3 domain-containing 31.5 1.9E+02 0.0041 28.3 7.3 25 193-217 91-115 (206)
140 PF05262 Borrelia_P83: Borreli 31.3 7.8E+02 0.017 27.5 12.5 38 50-87 216-253 (489)
141 PRK05431 seryl-tRNA synthetase 31.2 1.7E+02 0.0038 31.1 7.5 82 210-291 10-95 (425)
142 PF10146 zf-C4H2: Zinc finger- 31.2 4.7E+02 0.01 26.2 10.0 77 239-315 16-99 (230)
143 KOG0976 Rho/Rac1-interacting s 31.0 1.1E+03 0.023 28.9 27.3 247 30-317 113-385 (1265)
144 PF07889 DUF1664: Protein of u 30.7 4.4E+02 0.0095 24.4 10.3 41 235-285 37-77 (126)
145 PF05557 MAD: Mitotic checkpoi 30.2 5.3E+02 0.011 29.1 11.3 27 261-287 509-535 (722)
146 PRK04778 septation ring format 30.2 7.8E+02 0.017 27.1 26.3 206 99-317 111-337 (569)
147 PRK04325 hypothetical protein; 30.1 2.3E+02 0.0049 23.7 6.5 37 244-280 19-55 (74)
148 PF05008 V-SNARE: Vesicle tran 29.9 2.9E+02 0.0063 22.1 7.8 68 240-309 5-73 (79)
149 PF14193 DUF4315: Domain of un 29.5 1.1E+02 0.0023 26.5 4.6 53 264-316 3-60 (83)
150 KOG2669 Regulator of nuclear m 29.5 1.7E+02 0.0037 31.0 6.9 137 170-310 140-292 (325)
151 cd09234 V_HD-PTP_like Protein- 29.5 6.3E+02 0.014 25.9 12.0 137 27-198 188-335 (337)
152 KOG4603 TBP-1 interacting prot 29.4 5.7E+02 0.012 25.6 10.0 57 265-321 119-187 (201)
153 PF15070 GOLGA2L5: Putative go 29.3 9E+02 0.02 27.6 16.7 66 247-312 107-172 (617)
154 TIGR01069 mutS2 MutS2 family p 29.0 4E+02 0.0086 30.8 10.3 40 188-227 497-536 (771)
155 KOG3758 Uncharacterized conser 28.4 1E+03 0.022 27.8 13.7 170 208-418 48-244 (655)
156 PF12072 DUF3552: Domain of un 28.3 5.3E+02 0.012 24.6 11.9 53 97-160 93-145 (201)
157 PF05667 DUF812: Protein of un 28.2 9.3E+02 0.02 27.4 19.0 88 188-321 488-575 (594)
158 COG5185 HEC1 Protein involved 27.9 9.6E+02 0.021 27.5 17.2 189 175-401 324-516 (622)
159 PF06785 UPF0242: Uncharacteri 27.7 8.4E+02 0.018 26.7 12.9 137 147-315 69-220 (401)
160 PF07795 DUF1635: Protein of u 27.4 1.7E+02 0.0036 29.5 6.2 25 163-187 99-123 (214)
161 PF07106 TBPIP: Tat binding pr 27.4 1.6E+02 0.0034 27.1 5.7 26 260-285 114-139 (169)
162 PF13851 GAS: Growth-arrest sp 27.3 5.4E+02 0.012 24.9 9.5 84 228-311 35-128 (201)
163 PF12325 TMF_TATA_bd: TATA ele 27.1 4E+02 0.0086 24.3 8.0 15 340-354 99-113 (120)
164 KOG0804 Cytoplasmic Zn-finger 26.6 9.4E+02 0.02 27.1 12.0 66 234-299 347-412 (493)
165 PF13863 DUF4200: Domain of un 26.5 4.1E+02 0.009 22.8 9.8 76 43-118 31-106 (126)
166 PF04102 SlyX: SlyX; InterPro 26.3 2.5E+02 0.0054 22.8 6.0 32 249-280 19-50 (69)
167 TIGR01010 BexC_CtrB_KpsE polys 26.2 5.3E+02 0.011 26.2 9.6 107 183-291 142-264 (362)
168 PF08946 Osmo_CC: Osmosensory 26.2 77 0.0017 25.2 2.9 26 273-298 16-41 (46)
169 PF04111 APG6: Autophagy prote 26.1 3.9E+02 0.0085 27.5 8.8 34 285-319 115-148 (314)
170 PF07544 Med9: RNA polymerase 26.1 1.8E+02 0.0038 24.5 5.3 55 227-281 21-78 (83)
171 KOG4673 Transcription factor T 26.0 1.2E+03 0.026 27.9 22.3 195 197-485 411-624 (961)
172 CHL00118 atpG ATP synthase CF0 26.0 5.1E+02 0.011 23.6 13.0 49 22-70 45-93 (156)
173 PF06637 PV-1: PV-1 protein (P 25.2 9.7E+02 0.021 26.6 15.3 92 68-192 331-424 (442)
174 KOG0971 Microtubule-associated 25.1 8.6E+02 0.019 29.9 12.0 56 231-288 294-351 (1243)
175 COG1340 Uncharacterized archae 25.1 8.3E+02 0.018 25.8 13.6 52 19-70 127-188 (294)
176 PF05911 DUF869: Plant protein 24.9 3.8E+02 0.0082 31.4 9.2 107 194-300 40-165 (769)
177 KOG1003 Actin filament-coating 24.8 7.4E+02 0.016 25.1 16.1 110 191-307 21-133 (205)
178 PRK00295 hypothetical protein; 24.7 3.8E+02 0.0081 22.0 6.8 34 247-280 18-51 (68)
179 PF07798 DUF1640: Protein of u 24.1 2.7E+02 0.0058 26.0 6.6 17 228-244 52-68 (177)
180 COG0576 GrpE Molecular chapero 24.0 6.7E+02 0.014 24.3 9.7 12 343-354 114-125 (193)
181 PRK10869 recombination and rep 24.0 1E+03 0.022 26.4 12.4 127 237-368 153-289 (553)
182 PRK10884 SH3 domain-containing 23.9 4.6E+02 0.0099 25.8 8.4 56 231-286 97-156 (206)
183 PF13514 AAA_27: AAA domain 23.9 1.3E+03 0.028 27.6 38.0 109 170-285 593-710 (1111)
184 cd07650 F-BAR_Syp1p_like The F 23.7 6.9E+02 0.015 24.3 11.6 73 96-168 18-96 (228)
185 PRK14158 heat shock protein Gr 23.6 7.1E+02 0.015 24.5 10.0 14 342-355 115-128 (194)
186 PF00261 Tropomyosin: Tropomyo 23.6 6.9E+02 0.015 24.3 20.7 36 27-62 12-47 (237)
187 PF10211 Ax_dynein_light: Axon 23.2 3E+02 0.0066 26.3 6.9 58 229-286 129-187 (189)
188 PRK00736 hypothetical protein; 23.1 3.6E+02 0.0078 22.1 6.4 29 250-278 21-49 (68)
189 PF12072 DUF3552: Domain of un 23.1 6.7E+02 0.014 24.0 12.8 72 242-316 72-143 (201)
190 PLN02320 seryl-tRNA synthetase 23.0 3.5E+02 0.0075 30.2 8.1 80 209-290 74-158 (502)
191 PF05529 Bap31: B-cell recepto 22.5 5E+02 0.011 24.2 8.1 63 56-118 113-179 (192)
192 PF08336 P4Ha_N: Prolyl 4-Hydr 22.5 2.9E+02 0.0062 24.5 6.2 73 345-421 2-83 (134)
193 PF14197 Cep57_CLD_2: Centroso 22.4 4.6E+02 0.0099 21.8 7.4 60 232-291 3-69 (69)
194 KOG4571 Activating transcripti 22.3 2E+02 0.0043 30.3 5.8 41 240-280 247-287 (294)
195 KOG1853 LIS1-interacting prote 22.2 9.6E+02 0.021 25.5 10.9 88 217-314 56-147 (333)
196 PF11570 E2R135: Coiled-coil r 22.0 3.5E+02 0.0076 25.7 6.8 59 17-75 62-122 (136)
197 PF10046 BLOC1_2: Biogenesis o 21.8 4.4E+02 0.0095 22.7 7.0 19 298-316 74-92 (99)
198 PF07795 DUF1635: Protein of u 21.8 3E+02 0.0064 27.7 6.7 24 57-80 32-55 (214)
199 PRK12705 hypothetical protein; 21.6 5.3E+02 0.012 28.8 9.2 47 228-274 78-124 (508)
200 KOG0018 Structural maintenance 21.6 1.6E+03 0.035 27.9 18.9 91 229-319 411-515 (1141)
201 COG1340 Uncharacterized archae 21.4 9.8E+02 0.021 25.3 23.0 197 62-285 17-216 (294)
202 PRK04406 hypothetical protein; 21.4 3.8E+02 0.0082 22.5 6.3 20 294-313 33-52 (75)
203 PF04837 MbeB_N: MbeB-like, N- 21.3 3.8E+02 0.0082 21.6 6.0 41 349-389 1-45 (52)
204 KOG4797 Transcriptional regula 21.2 1.2E+02 0.0026 28.2 3.6 32 266-297 64-95 (123)
205 cd07307 BAR The Bin/Amphiphysi 20.6 5.4E+02 0.012 21.9 13.8 76 141-219 23-111 (194)
206 COG4026 Uncharacterized protei 20.5 3.4E+02 0.0074 28.2 7.0 59 253-314 144-205 (290)
207 PF05701 WEMBL: Weak chloropla 20.5 1.2E+03 0.025 25.7 37.0 385 8-489 9-409 (522)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.32 E-value=0.55 Score=54.44 Aligned_cols=112 Identities=22% Similarity=0.373 Sum_probs=79.0
Q ss_pred hhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 011223 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268 (490)
Q Consensus 189 v~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele 268 (490)
-+.+++.-+..+-.++......++.+..+|++-.- +...+++.+..++.++..-....+.+...+......+..++
T Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 876 (1163)
T COG1196 801 ELEEAERRLDALERELESLEQRRERLEQEIEELEE----EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666667777766666666666665443 34578888888888888888888888888888888888888
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHh
Q 011223 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (490)
Q Consensus 269 ~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~ 304 (490)
..+..+++....++..++.++....-+-.++..+..
T Consensus 877 ~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 912 (1163)
T COG1196 877 DELKELEEEKEELEEELRELESELAELKEEIEKLRE 912 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877777555555554444433
No 2
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.73 E-value=0.94 Score=47.12 Aligned_cols=95 Identities=13% Similarity=0.243 Sum_probs=56.3
Q ss_pred HHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 011223 187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266 (490)
Q Consensus 187 ygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~e 266 (490)
.+.+...++...++=.|++.......+..+++++++ ++...+..++..+..+.+.++.+.+....-+.+|..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~--------~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~ 369 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN--------EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE 369 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888888888888888887777777443 445556566655555555555554444444555554
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhh
Q 011223 267 IESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 267 le~E~~~lKe~V~e~E~kl~~lE 289 (490)
++.+..++-+.+..++.++.++.
T Consensus 370 l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 370 LQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHhhhhchHHHHHHHHHHHHHHH
Confidence 54444444444444444443333
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.67 E-value=1.4 Score=48.55 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 011223 371 SREVKSLNEAVGQLVKEKEHIVSLLRSALS 400 (490)
Q Consensus 371 kkE~keLE~sV~~L~kEneDI~sLLRsALs 400 (490)
.....+|......|.+.-..|....+.-..
T Consensus 999 ~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~ 1028 (1179)
T TIGR02168 999 KERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655553
No 4
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.52 E-value=2 Score=48.97 Aligned_cols=184 Identities=18% Similarity=0.245 Sum_probs=116.9
Q ss_pred cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 011223 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (490)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP 174 (490)
.|+.-+.+..++.-+|..++.++..-+.-+..-.+++-.-..++....+|..-.-|| -..|+|
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L-----------------~~~g~~ 171 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML-----------------QSKGLS 171 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhcCCc
Confidence 444445555555666666666555443322222333333334444555555555554 133444
Q ss_pred CCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHH
Q 011223 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE 254 (490)
Q Consensus 175 ~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ 254 (490)
.. -.+=..++.|-|-..+-.+-.|-..+....+.++.+|++|.+|+ +. ..-++.-+.+.
T Consensus 172 ~~--~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~-~~------------------~~~~a~t~alq 230 (775)
T PF10174_consen 172 AE--AEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL-QM------------------ERDDAETEALQ 230 (775)
T ss_pred cc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hc------------------CCCchhHHHHH
Confidence 31 11223456677778888888898899999999999999987765 32 23344555778
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh
Q 011223 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (490)
Q Consensus 255 ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v 316 (490)
+-+..||.+|+.+|+-+..+.+-|..|...+......|..+..++....+-...+-+=++.+
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~ 292 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRL 292 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88999999999999988888888877766665555778888888887776666654444433
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=96.38 E-value=2.2 Score=47.24 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=48.8
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhhhhhhchhHHHHhhhHHhHHHH
Q 011223 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIHDQ 308 (490)
Q Consensus 236 is~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V-------~e~E~kl~~lE~qr~lL~dql~svs~Ihd~ 308 (490)
+..++.+++...+.++.+...+...+..+..++.+++.++..+ ..|+..+..++....-|.+.++.+......
T Consensus 358 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~ 437 (880)
T PRK02224 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT 437 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555544555555555444444444 345555555555555555666666665565
Q ss_pred HHHHHHHhc---CCCccccccccccCCC
Q 011223 309 VDDIIKIVD---DGNLDQSGLSESLFLP 333 (490)
Q Consensus 309 L~~vi~~vd---d~k~~~s~LsEs~f~~ 333 (490)
+...++.+. .+.. --+|.+.|-+
T Consensus 438 ~~~~l~~~~~~l~~~~--Cp~C~r~~~~ 463 (880)
T PRK02224 438 ARERVEEAEALLEAGK--CPECGQPVEG 463 (880)
T ss_pred HHHHHHHHHHHHhccc--CCCCCCcCCC
Confidence 666655554 2222 2455555544
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.62 E-value=4.7 Score=44.64 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 011223 307 DQVDDIIK 314 (490)
Q Consensus 307 d~L~~vi~ 314 (490)
+.+.+++.
T Consensus 506 ~~v~~~i~ 513 (1179)
T TIGR02168 506 EGVKALLK 513 (1179)
T ss_pred hHHHHHHh
Confidence 33444433
No 7
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.58 E-value=7.6 Score=46.75 Aligned_cols=219 Identities=18% Similarity=0.254 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhh
Q 011223 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA 108 (490)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~ 108 (490)
..+|+.-+||.++=.+.-..|..+.+|.+.+-.|. +-+=.-..-|-+++ |+-
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~-------~~~a~as~~q~~~s---------------------~~e 1472 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA-------LEQANASRSQMEES---------------------NRE 1472 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHH---------------------HHH
Confidence 45677777777777777777777777766554332 22211111111121 112
Q ss_pred HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCc----ccCCchh
Q 011223 109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ----KYTGLPA 184 (490)
Q Consensus 109 ~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~Sq----KYtGL~A 184 (490)
-+.+.+|+-+.+-+-+-+-+++.+++. .-|..||-....-+-.=..+|--.|...+|. -+=|-++- .-.-|++
T Consensus 1473 l~~Li~~v~~Flt~~~adp~si~~vA~--~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nV-d~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAE--EVLALELPLTPEQIQQLTGEIQERVASLPNV-DAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhhHHHHHHHHH
Confidence 233455666666666666666666655 3466677776666665566666666655553 11122220 1124555
Q ss_pred HHHHhhhchhHH---HHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhH
Q 011223 185 VVYGVIKRTNEI---VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKD 261 (490)
Q Consensus 185 iaygv~KRtnei---veell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke 261 (490)
.|---=|++.++ +|+++.-+..|.++-+.|..-|.|-+ +.|..-++-+++--.+....|+-+.---
T Consensus 1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~-----------~~~~~a~~~l~kv~~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD-----------RDIRLAQQLLAKVQEETAAAEKLATSAT 1618 (1758)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544555443 45556666667777777777666544 2333444444444444444455566667
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 262 ~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
..+.+|++-|+.||-+...-....++++
T Consensus 1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7788888878888777755544444444
No 8
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.14 E-value=9.8 Score=45.61 Aligned_cols=153 Identities=22% Similarity=0.286 Sum_probs=94.9
Q ss_pred hcccCCCCCCCCCC-CCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhh
Q 011223 159 SGKVSNFKNFSAGG-LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237 (490)
Q Consensus 159 s~k~s~~k~f~~~~-lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis 237 (490)
||..++--+-..+| .-++.--||.-..+---+-|+-.-+.+..+|+-..--.=++..-+...|--+.-+..+.|++++.
T Consensus 751 SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k 830 (1293)
T KOG0996|consen 751 SGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVK 830 (1293)
T ss_pred cccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHH
Confidence 44444433222333 44444356766666666666666666666666555444455555555566666677777777776
Q ss_pred hchHHHhhhhhhHHHHHHH----------HHHhHHHHHHHHHhHHHH-----H-HHHHHHHHHhhhhhhhchhHHH-Hhh
Q 011223 238 GLREEVAKKSSFIENLEKS----------LIEKDEKVAEIESQGLEL-----R-QLVNEYEDKLKNLESHRPLLVD-QLN 300 (490)
Q Consensus 238 ~lr~eva~kss~~e~l~ks----------~~eke~~i~ele~E~~~l-----K-e~V~e~E~kl~~lE~qr~lL~d-ql~ 300 (490)
++-..++--.+-+-.+|+. +.++.+.|+++++|++++ | ++|.+|-.++ +.-.+.++. |=.
T Consensus 831 ~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i---~~i~~e~~q~qk~ 907 (1293)
T KOG0996|consen 831 RLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKI---DEIGGEKVQAQKD 907 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHhhchhhHHhHH
Confidence 6666444433333344433 345577799999999998 5 8888888888 544444444 777
Q ss_pred hHHhHHHHHHHHHH
Q 011223 301 YVSKIHDQVDDIIK 314 (490)
Q Consensus 301 svs~Ihd~L~~vi~ 314 (490)
.+.+++++|..+-.
T Consensus 908 kv~~~~~~~~~l~~ 921 (1293)
T KOG0996|consen 908 KVEKINEQLDKLEA 921 (1293)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877743
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.04 E-value=9.5 Score=44.65 Aligned_cols=51 Identities=27% Similarity=0.356 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 011223 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE 87 (490)
Q Consensus 37 ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ 87 (490)
|-+-.=..-++-|+..+...+.+++|+..+.++.=++-+.+.+|+..|.+-
T Consensus 165 aGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y 215 (1163)
T COG1196 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERY 215 (1163)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566788899999999999999999999999999999999998775
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.00 E-value=7.7 Score=43.39 Aligned_cols=51 Identities=6% Similarity=0.207 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHH
Q 011223 30 ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQ 80 (490)
Q Consensus 30 ~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~ 80 (490)
..+..+..+++.-...-...+.....++..+..++.-...+-+....+..+
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~ 724 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444455555555555555555444444444443333
No 11
>PRK11637 AmiB activator; Provisional
Probab=94.83 E-value=1.4 Score=45.48 Aligned_cols=85 Identities=15% Similarity=0.260 Sum_probs=47.5
Q ss_pred HHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 011223 197 VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (490)
Q Consensus 197 veell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe 276 (490)
--+++.++..+.+.-...+.+++..-=+..-...++++....|....+.+......|++.....+..+.+++++...|..
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~ 247 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD 247 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333444455556665666666666666777766666666667666666666655
Q ss_pred HHHHH
Q 011223 277 LVNEY 281 (490)
Q Consensus 277 ~V~e~ 281 (490)
.+.++
T Consensus 248 ~I~~l 252 (428)
T PRK11637 248 SIARA 252 (428)
T ss_pred HHHHH
Confidence 55544
No 12
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.09 E-value=22 Score=44.70 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=24.3
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223 242 EVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (490)
Q Consensus 242 eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V 278 (490)
-..+..++...|.+++.+.+.+++.+.+....+...+
T Consensus 1267 q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ql 1303 (1930)
T KOG0161|consen 1267 KRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQL 1303 (1930)
T ss_pred HHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777888888888888887777333333333
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=93.95 E-value=13 Score=41.49 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=21.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhh
Q 011223 98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEI 144 (490)
Q Consensus 98 ~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei 144 (490)
+...|.++....+++..++.++....++-...|++....++.++.++
T Consensus 382 ~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~ 428 (880)
T PRK02224 382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRERE 428 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554444333333444444444445554443
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.93 E-value=18 Score=43.04 Aligned_cols=114 Identities=12% Similarity=0.193 Sum_probs=79.0
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 011223 194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE 273 (490)
Q Consensus 194 neiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~ 273 (490)
...+..+-+.++.+.+..+.+.... .++|..++.++.++......++...+.+.+ +
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el-----------~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~------------ 631 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKEL-----------ASLEQNKNHINNELESKEEQLSSYEDKLFD-V------------ 631 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence 6677777777888888777776654 678888888888888777776666555541 1
Q ss_pred HHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh--cCCCccccccccccCCCcc
Q 011223 274 LRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV--DDGNLDQSGLSESLFLPQE 335 (490)
Q Consensus 274 lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v--dd~k~~~s~LsEs~f~~~e 335 (490)
.-+..|+..|..++..-......++.+..+...+...+... ..++. -.||..-|.+.+
T Consensus 632 --~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~--C~LC~R~f~~ee 691 (1311)
T TIGR00606 632 --CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSC--CPVCQRVFQTEA 691 (1311)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCCCCCChh
Confidence 12345666666666666667777788888888888888888 44444 578888887433
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.93 E-value=9.9 Score=46.33 Aligned_cols=30 Identities=7% Similarity=0.100 Sum_probs=17.3
Q ss_pred hhchhHHHHHHHHhhhhhhhhhhHHHHHhh
Q 011223 190 IKRTNEIVEELVGQIDATAKSRNDVREQME 219 (490)
Q Consensus 190 ~KRtneiveell~Qida~~ksrn~aReQme 219 (490)
+.|.++|+.++-.++..-.+.+..|+...+
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655555433
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=92.70 E-value=20 Score=40.18 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH
Q 011223 30 ERFREVLAELNRERQAREAAENSATELSEKFNRLKAL 66 (490)
Q Consensus 30 ~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkal 66 (490)
.++..+.++++.-+.....++.....+......+..-
T Consensus 681 ~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~ 717 (1164)
T TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK 717 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555444444444555555555554444333
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.85 E-value=34 Score=40.79 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=27.7
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHh
Q 011223 67 AHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVT 120 (490)
Q Consensus 67 a~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~ 120 (490)
..+.+..|..+..+-++-..+.++.-..-..+..+|..+....+..+..++++.
T Consensus 876 l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 344566666666666655555444444444444455544444444555554433
No 18
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=91.75 E-value=18 Score=37.58 Aligned_cols=187 Identities=20% Similarity=0.265 Sum_probs=102.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCC---CCCCCCCC--
Q 011223 98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSN---FKNFSAGG-- 172 (490)
Q Consensus 98 ~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~---~k~f~~~~-- 172 (490)
|-.|+.-+...++-+.+.++.+..+ |-.--.++..|...+. -++-.-+|+.....+.| .-+|.|++
T Consensus 121 L~kE~~li~~~~~lL~~~l~~~~eQ-------l~~lr~ar~~Le~Dl~--dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r 191 (384)
T PF03148_consen 121 LLKEVELIENIKRLLQRTLEQAEEQ-------LRLLRAARYRLEKDLS--DKFEALEIDTQCLSLNNNSTNISYKPGSTR 191 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence 3445555555566666666665544 1112222233333332 23333445554444433 22233322
Q ss_pred -CCCCcccCCchhHHHHhhhchhHHHHHH---HHhhhhh-hhhhhHHHHH-------hhhhcceeeeeehhhHHhhhhch
Q 011223 173 -LPRSQKYTGLPAVVYGVIKRTNEIVEEL---VGQIDAT-AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLR 240 (490)
Q Consensus 173 -lP~SqKYtGL~Aiaygv~KRtneiveel---l~Qida~-~ksrn~aReQ-------meqrny~IAIEVSqLEAsis~lr 240 (490)
-|.+.-|.-+...++..|.++..-+..- -..|+.+ ...+++.+.| +.+|=|+.--=-.+||-......
T Consensus 192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~ 271 (384)
T PF03148_consen 192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL 271 (384)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2444455566667777777765443221 1112211 1223333333 34444555455568888888888
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHH------------------------hHHHHHHHHHHHHHHhhhhhhhch
Q 011223 241 EEVAKKSSFIENLEKSLIEKDEKVAEIES------------------------QGLELRQLVNEYEDKLKNLESHRP 293 (490)
Q Consensus 241 ~eva~kss~~e~l~ks~~eke~~i~ele~------------------------E~~~lKe~V~e~E~kl~~lE~qr~ 293 (490)
+|++.=...++.|++++.+|++-+.-.+. ||..|++.+..|..+|..++....
T Consensus 272 ~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~ 348 (384)
T PF03148_consen 272 QEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQ 348 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543333 888888888888877766664333
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.76 E-value=56 Score=41.35 Aligned_cols=236 Identities=22% Similarity=0.295 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHH
Q 011223 31 RFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKD 110 (490)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~d 110 (490)
.+.++--+|+.|-+++-+..+...-++-.++.|+---.+....+.+..++--.+.-+ +....-|+.+.+.+.....+
T Consensus 1302 qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e---~~~~~~k~e~~~~~~~eele 1378 (1930)
T KOG0161|consen 1302 QLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAE---LAQWKKKFEEEVLQRLEELE 1378 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344555667888888888888888888888887777777777777555543332221 11222233333333333344
Q ss_pred HHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCCchhHHHHhh
Q 011223 111 EVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVI 190 (490)
Q Consensus 111 e~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~ 190 (490)
++.|.+-.-+-. +.+........-..++.+.+=|-.+++...=.+...... +.-|-.-|| + -.+.+
T Consensus 1379 e~kk~l~~~lq~-------~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~-~~~le~k~k--~----f~k~l 1444 (1930)
T KOG0161|consen 1379 ELKKKLQQRLQE-------LEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAA-VAALEKKQK--R----FEKLL 1444 (1930)
T ss_pred HHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHH--H----HHHHH
Confidence 443333221111 111111111122222222222222222222111000000 000111111 0 13455
Q ss_pred hchhHHHHHHHHhhhhhhhhhhHHHHHhhh---hcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 011223 191 KRTNEIVEELVGQIDATAKSRNDVREQMEQ---RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (490)
Q Consensus 191 KRtneiveell~Qida~~ksrn~aReQmeq---rny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~el 267 (490)
-..-..++++..-+|++.++=.. .+.+-+ +-|+.+++ .+-.++.+..+-.+.+++|..++.+....+.++
T Consensus 1445 ~e~k~~~e~l~~Eld~aq~e~r~-~~tel~kl~~~lee~~e------~~e~l~renk~l~~ei~dl~~~~~e~~k~v~el 1517 (1930)
T KOG0161|consen 1445 AEWKKKLEKLQAELDAAQRELRQ-LSTELQKLKNALEELLE------QLEELRRENKNLSQEIEDLEEQKDEGGKRVHEL 1517 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666788888888886543211 111222 23444443 566778899999999999999999999999888
Q ss_pred HH-------hHHHHHHHHHHHHHHhhhhhh
Q 011223 268 ES-------QGLELRQLVNEYEDKLKNLES 290 (490)
Q Consensus 268 e~-------E~~~lKe~V~e~E~kl~~lE~ 290 (490)
++ +..+|+..++++++.++..++
T Consensus 1518 ek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1518 EKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 87 777888888888888755553
No 20
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.71 E-value=2.4 Score=37.73 Aligned_cols=71 Identities=25% Similarity=0.379 Sum_probs=36.1
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHH
Q 011223 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs 303 (490)
+.|.+....++.++..-.+..+.....+...+....+ +=..|..-+.+++..+..|..||.+|.+||..+|
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls 132 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3344444444444444444444444444333322221 1223444444444444456899999999998774
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.41 E-value=47 Score=38.40 Aligned_cols=147 Identities=23% Similarity=0.316 Sum_probs=81.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhhh---------cCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCC
Q 011223 100 TEIAEVNIAKDEVVKQLDEVTKAR---------DGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSA 170 (490)
Q Consensus 100 ~~l~~v~~~~de~~kq~~~~~~~~---------~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~ 170 (490)
..|+..+.-++-++..|++. +.+ ++.+.++....-..+.|++++....--|-.-=+.+|..+|
T Consensus 436 ~~lEea~~eker~~e~l~e~-r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s------- 507 (775)
T PF10174_consen 436 ETLEEALREKERLQERLEEQ-RERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLAS------- 507 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhh-------
Confidence 77778888888888777764 222 2223333333334455555554443322222222222222
Q ss_pred CCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhH
Q 011223 171 GGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFI 250 (490)
Q Consensus 171 ~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~ 250 (490)
++++ +++-+--..- .+--.++=++.|-+|++. .+-|-++..++..||..+.+.++++.+-.++|
T Consensus 508 ~~~K---~~s~i~~l~I-~lEk~rek~~kl~~ql~k------------~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EV 571 (775)
T PF10174_consen 508 SQEK---KDSEIERLEI-ELEKKREKHEKLEKQLEK------------LRANAELRDRIQQLEQEVTRYREESEKAQAEV 571 (775)
T ss_pred ccch---hhhHHHHHHH-HHHHhhhHHHHHHHHHHH------------HHhCHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2222222222 222223444566666666 22334667889999999999999999999999
Q ss_pred HHHHHHHHH-------hHHHHHHHHHh
Q 011223 251 ENLEKSLIE-------KDEKVAEIESQ 270 (490)
Q Consensus 251 e~l~ks~~e-------ke~~i~ele~E 270 (490)
|.|-..+.+ |+.+|.+|+++
T Consensus 572 ERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 572 ERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999765543 34455555554
No 22
>PRK09039 hypothetical protein; Validated
Probab=88.99 E-value=10 Score=39.01 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=75.3
Q ss_pred HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhc---ceeeeeehhhHHhhhhchHHHhh-------hhhhHHHHHHHH
Q 011223 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRN---FEIAIEVSELEATISGLREEVAK-------KSSFIENLEKSL 257 (490)
Q Consensus 188 gv~KRtneiveell~Qida~~ksrn~aReQmeqrn---y~IAIEVSqLEAsis~lr~eva~-------kss~~e~l~ks~ 257 (490)
+-..+..+.+.+|=.|++++...|.++..+..... -+.---..+|++.+...+...+. =.+.++.|.+++
T Consensus 74 ~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 74 QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999988766321 01111122223333333333333 333444444444
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHH----HHHHHHhc-----CCCcccccccc
Q 011223 258 IEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV----DDIIKIVD-----DGNLDQSGLSE 328 (490)
Q Consensus 258 ~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L----~~vi~~vd-----d~k~~~s~LsE 328 (490)
..-+..|.+.+....+.+.+++.|...| +..|.+-..-+..+...+ .+++..-+ ++.. ..-++
T Consensus 154 a~le~~L~~ae~~~~~~~~~i~~L~~~L------~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~--~~~~~ 225 (343)
T PRK09039 154 AALEAALDASEKRDRESQAKIADLGRRL------NVALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRF--VFQSE 225 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEE--EecCC
Confidence 4444444444444444444444444444 333333344444554444 33332211 1111 12345
Q ss_pred ccCCCcccchhHHHHHHHhh
Q 011223 329 SLFLPQETDMEENIRASLAG 348 (490)
Q Consensus 329 s~f~~~etD~ee~lK~sL~g 348 (490)
.+|-+...++...-+..|..
T Consensus 226 vlF~~gsa~L~~~~~~~L~~ 245 (343)
T PRK09039 226 VLFPTGSAELNPEGQAEIAK 245 (343)
T ss_pred ceeCCCCcccCHHHHHHHHH
Confidence 77887777666555554443
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.58 E-value=26 Score=34.31 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=41.8
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH----HHHHHHhhhhhhhchhHHHHhhhHHhH
Q 011223 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV----NEYEDKLKNLESHRPLLVDQLNYVSKI 305 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V----~e~E~kl~~lE~qr~lL~dql~svs~I 305 (490)
..-...+..+|+|+..-...+..|...+..-..+...|++.+..+.... ..+...+..++..-.-|-..+.....=
T Consensus 205 ~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 205 EKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 3344445555666666555666665555555555555555443333222 334444444444444444444444444
Q ss_pred HHHHHHHHHHhc
Q 011223 306 HDQVDDIIKIVD 317 (490)
Q Consensus 306 hd~L~~vi~~vd 317 (490)
|..|.++-..+|
T Consensus 285 y~~Ll~~K~~Ld 296 (312)
T PF00038_consen 285 YQELLDVKLALD 296 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH
Confidence 444555444443
No 24
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.96 E-value=8.9 Score=39.75 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHH----H
Q 011223 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----E 104 (490)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~----~ 104 (490)
.+++.+|..-||+=.+-|.--.+-+..+++.+..=|.=.-+.-..=--++|+..--+-.-+..-+.++||+.+|. +
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q 96 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ 96 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence 567788888887766666666667777777776666544444333333444444434444555577778888776 2
Q ss_pred Hh---hhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCC
Q 011223 105 VN---IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG 181 (490)
Q Consensus 105 v~---~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtG 181 (490)
|+ +|-.-..+|++...- +..+ +++|++.|-.-..+|--.++---.|-|+| +.|++.+|.|+|
T Consensus 97 v~~lEgQl~s~Kkqie~Leq----------elkr----~KsELErsQ~~~~~~~~sl~~~stpqk~f-~~p~tp~q~~~~ 161 (307)
T PF10481_consen 97 VNFLEGQLNSCKKQIEKLEQ----------ELKR----CKSELERSQQAASSGDVSLNPCSTPQKSF-ATPLTPSQYYSD 161 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHH----HHHHHHHHHHhhccCCccccccCCchhhc-cCCCChhhhhhh
Confidence 21 111222223322111 1233 78899988877777776677677788999 677777866654
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.42 E-value=29 Score=33.60 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=70.1
Q ss_pred HhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 011223 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (490)
Q Consensus 202 ~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~ 281 (490)
..+...+..-.+++..|++|+|...==+.+||..+ ..-....+....-+.+-..++.-++.++....++++.+
T Consensus 67 ~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l-------~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~ 139 (237)
T PF00261_consen 67 EEAEKRADESERARKVLENREQSDEERIEELEQQL-------KEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA 139 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444555556788999999998877777888777 33344455555556677777777777888888888888
Q ss_pred HHHhhhhhhhchhHHHHhhhHHhHHHH
Q 011223 282 EDKLKNLESHRPLLVDQLNYVSKIHDQ 308 (490)
Q Consensus 282 E~kl~~lE~qr~lL~dql~svs~Ihd~ 308 (490)
+.+++.|+..=..+-.+|.++..-.+.
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~ 166 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEK 166 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 888888886666666666665544433
No 26
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.78 E-value=23 Score=31.78 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=31.9
Q ss_pred HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhh
Q 011223 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAK 245 (490)
Q Consensus 188 gv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~ 245 (490)
.-..++=.+|-+||.++|-....|...-.++-.-.|++ ..|...+.+|++.++.
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~----~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDI----ERLQNDVERLKEQLEE 84 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHH
Confidence 33455667889999999887777666555554444332 3444444444444433
No 27
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.32 E-value=38 Score=33.87 Aligned_cols=130 Identities=25% Similarity=0.293 Sum_probs=86.3
Q ss_pred cccCCCCCCCCCCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhc
Q 011223 160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239 (490)
Q Consensus 160 ~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~l 239 (490)
=|-+--|+||..||...+|+...+.-.--++.-.+..|++|=+|||.. ||-+
T Consensus 94 EkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~-------------------------E~E~--- 145 (233)
T PF04065_consen 94 EKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL-------------------------EAEI--- 145 (233)
T ss_pred HHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH---
Confidence 355678999999999999888777777777777777777777777643 2222
Q ss_pred hHHHhhhhhhHHHHH------HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHH
Q 011223 240 REEVAKKSSFIENLE------KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII 313 (490)
Q Consensus 240 r~eva~kss~~e~l~------ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi 313 (490)
|+|. +..+.+.+++.+++.=++-.+--|..||.-|+.|+.-. | .-..|..|++.|.-.|
T Consensus 146 -----------E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l---~~e~V~~ikedieyYv 210 (233)
T PF04065_consen 146 -----------ESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-L---DPEQVEDIKEDIEYYV 210 (233)
T ss_pred -----------HHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CHHHHHHHHHHHHHHH
Confidence 2221 23446788888888878888888888888887777332 1 1255667888888888
Q ss_pred HHhcCCCccc-cccccccCC
Q 011223 314 KIVDDGNLDQ-SGLSESLFL 332 (490)
Q Consensus 314 ~~vdd~k~~~-s~LsEs~f~ 332 (490)
+.=.+.-... ..+++.+++
T Consensus 211 e~n~d~Df~ede~iYddl~L 230 (233)
T PF04065_consen 211 ESNQDPDFEEDEDIYDDLNL 230 (233)
T ss_pred HcCCCCcccchHhHhhccCC
Confidence 8743322111 244555544
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.47 E-value=36 Score=37.05 Aligned_cols=198 Identities=19% Similarity=0.272 Sum_probs=96.1
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhhhh-------hhhhHHH----------HHhhhhcceeeeeehhhHHh--------
Q 011223 181 GLPAVVYGVIKRTNEIVEELVGQIDATA-------KSRNDVR----------EQMEQRNFEIAIEVSELEAT-------- 235 (490)
Q Consensus 181 GL~Aiaygv~KRtneiveell~Qida~~-------ksrn~aR----------eQmeqrny~IAIEVSqLEAs-------- 235 (490)
-++.|.-+=++.+++.++.+-.+||.-. .+|+.+- ..+...|.+...|...|-.+
T Consensus 268 ~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~ 347 (569)
T PRK04778 268 NLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL 347 (569)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhH
Confidence 3455777778888888888877777532 2333222 23344455555555555555
Q ss_pred --hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh----hhchhHHHHhhhHHhHHHHH
Q 011223 236 --ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSKIHDQV 309 (490)
Q Consensus 236 --is~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE----~qr~lL~dql~svs~Ihd~L 309 (490)
+..+..++..-...+..+...+..+....++++.+...+.+.+..++.....+. ..|.--.+.-..+..+...|
T Consensus 348 ~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 348 ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444445444444444444444333322222 22333333333344444444
Q ss_pred HHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhh
Q 011223 310 DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKE 389 (490)
Q Consensus 310 ~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEne 389 (490)
..+-+.+.-.++ ..+|+++ +-..-..-..|.+|...+.. ..-=++.-.++.......+..|.++..
T Consensus 428 ~~ikr~l~k~~l--pgip~~y-----------~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~ 493 (569)
T PRK04778 428 HEIKRYLEKSNL--PGLPEDY-----------LEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETE 493 (569)
T ss_pred HHHHHHHHHcCC--CCCcHHH-----------HHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 3333322 11111223344444444444 222333344456667777777777777
Q ss_pred hHH
Q 011223 390 HIV 392 (490)
Q Consensus 390 DI~ 392 (490)
|+.
T Consensus 494 dL~ 496 (569)
T PRK04778 494 ELV 496 (569)
T ss_pred HHH
Confidence 764
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.81 E-value=94 Score=37.03 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhh--------------hhhhhhhcccCC
Q 011223 109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV--------------TGIEKISGKVSN 164 (490)
Q Consensus 109 ~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~--------------sg~Ekis~k~s~ 164 (490)
...++.+....-+.|+-...+|....+.+..++..+...-++|. .|-+.-=|||-+
T Consensus 492 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid 561 (1201)
T PF12128_consen 492 VEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVID 561 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCC
Confidence 33444444555555555555666666666677777777777763 466666688876
No 30
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.41 E-value=23 Score=31.87 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=41.2
Q ss_pred HHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 213 ~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
-+|+-|..|+ .+..++..++..+ +++-+..+.|..+-..+.++|..++.++..+.+.+.......
T Consensus 104 s~k~~l~~R~-~~~~~~~~~~~~l-------~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~ 168 (218)
T cd07596 104 AVKETLDDRA-DALLTLQSLKKDL-------ASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRY 168 (218)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677776 5666666666666 666666777765554566777766666666666665544433
No 31
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.56 E-value=48 Score=40.30 Aligned_cols=64 Identities=23% Similarity=0.342 Sum_probs=44.1
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh
Q 011223 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (490)
Q Consensus 253 l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v 316 (490)
+..+.++.+.++++.+.+-..+...|..++..++++...+.-+.+-+..+.+....|..-..-.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~ 555 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDM 555 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhh
Confidence 4456666677777777777777777777777777777777777777777777776666544333
No 32
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=83.52 E-value=82 Score=35.32 Aligned_cols=161 Identities=25% Similarity=0.347 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 011223 77 STRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE 156 (490)
Q Consensus 77 ~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~E 156 (490)
++--||..+|||.++---||+|-.=+..| ++|+.-=+. |.-+|.... .|+-
T Consensus 30 as~ir~sR~rEK~El~~LNDRLA~YIekV--------R~LEaqN~~-----------------L~~di~~lr----~~~~ 80 (546)
T KOG0977|consen 30 ASPIRDSREREKKELQELNDRLAVYIEKV--------RFLEAQNRK-----------------LEHDINLLR----GVVG 80 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH-----------------HHHHHHHHH----hhcc
Confidence 34568889999999988898888777644 344431111 444544322 1211
Q ss_pred hhhcccCCCCCCCCCCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhh
Q 011223 157 KISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI 236 (490)
Q Consensus 157 kis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsi 236 (490)
+-.|+.|. +|. .=++ .+-+-+|-|++.|-.+. |++..|...+
T Consensus 81 ---~~ts~ik~----------~ye--------~El~------~ar~~l~e~~~~ra~~e-----------~ei~kl~~e~ 122 (546)
T KOG0977|consen 81 ---RETSGIKA----------KYE--------AELA------TARKLLDETARERAKLE-----------IEITKLREEL 122 (546)
T ss_pred ---CCCcchhH----------Hhh--------hhHH------HHHHHHHHHHHHHHHHH-----------HHHHHhHHHH
Confidence 11122222 222 1111 12334555666664432 3444555555
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHh
Q 011223 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (490)
Q Consensus 237 s~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~ 304 (490)
--||--+.++...+..-...+.+-...++.++-|...+|-++.-++++++.|...+.=|.++|..+++
T Consensus 123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555555555555555567788888888999999999999999999888888888887775
No 33
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.45 E-value=19 Score=42.24 Aligned_cols=128 Identities=24% Similarity=0.323 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhH
Q 011223 28 SVERFREVLAELNRERQAREA-------AENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLST 100 (490)
Q Consensus 28 ~~~~~~~l~ael~~er~ar~a-------ae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~ 100 (490)
.+|+|++.+|.|++.|..-+. +|+-..-.+.+|+-+|-.--+---..-++.+.=|+-...++-+-.+.+.+.+
T Consensus 387 e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~ 466 (980)
T KOG0980|consen 387 EQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEE 466 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 477899999999998865444 4444555666777777766666666777777777777777777788888888
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCC
Q 011223 101 EIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFK 166 (490)
Q Consensus 101 ~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k 166 (490)
+..++|.+-.+++++.+.+-...++ -.+..++++.|..+ |-.-+++..+++++..
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~-------~~~~le~l~~El~~----l~~e~~~lq~~~~~~~ 521 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTES-------QAKALESLRQELAL----LLIELEELQRTLSNLA 521 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHH----HHHHHHHHHHHhhhHH
Confidence 8888888888888887776666444 45567778888765 4566788888866643
No 34
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.30 E-value=0.36 Score=54.74 Aligned_cols=251 Identities=20% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhh
Q 011223 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA 108 (490)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~ 108 (490)
+-.|+.|-++|+.|++.|-.|-..+..++..+|=|- .+-|.+.+-+.++.|...++...|.
T Consensus 524 qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe--------------~~ld~~n~~~~e~~k~~kk~q~qlk----- 584 (859)
T PF01576_consen 524 QRQLESLEAELEEERKERAEALREKKKLESDLNELE--------------IQLDHANRANEEAQKQLKKLQAQLK----- 584 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhHhHHHHHHHHHHHHHHHH-----
Confidence 567899999999999999888888888877776553 2223333333333333344444443
Q ss_pred HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhh----------hhhhhhhhcccCCCCCCCCCCCCCCcc
Q 011223 109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML----------VTGIEKISGKVSNFKNFSAGGLPRSQK 178 (490)
Q Consensus 109 ~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL----------~sg~Ekis~k~s~~k~f~~~~lP~SqK 178 (490)
+++.++++..+.+++.+.++-.+-+-...|++|++....-+ =+-..-++..++...+ .
T Consensus 585 --dlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~----------~ 652 (859)
T PF01576_consen 585 --DLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTS----------Q 652 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------h
Confidence 55666677777777766666655555556666666544322 2222333333333322 1
Q ss_pred cCCchhHHHHhhhc---hhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHH
Q 011223 179 YTGLPAVVYGVIKR---TNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEK 255 (490)
Q Consensus 179 YtGL~Aiaygv~KR---tneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~k 255 (490)
.+.|.......-.+ ...=++|...-...+..--..|..|+.+ ++.|+++--.++ ..--+.--+|++
T Consensus 653 ~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~----l~~eL~~Eq~~~-------~~le~~k~~LE~ 721 (859)
T PF01576_consen 653 NSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQ----LAEELRQEQDHN-------QHLEKEKKALER 721 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 11222222222222 2222344444444444444444444443 344444433332 122222335666
Q ss_pred HHHHhHHHHHHHHHhHH-HHHHHHHHHHHHhhhhh----hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223 256 SLIEKDEKVAEIESQGL-ELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 256 s~~eke~~i~ele~E~~-~lKe~V~e~E~kl~~lE----~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~ 321 (490)
.+.+--.+|.++|.-+. .-|..|..+|.++++|+ .-..-=.+....++++...|.++.--+++++-
T Consensus 722 q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k 792 (859)
T PF01576_consen 722 QVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERK 792 (859)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 66666677776666222 12445566666666666 22222356778888999999888888888764
No 35
>PRK11637 AmiB activator; Provisional
Probab=82.89 E-value=64 Score=33.63 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHH
Q 011223 376 SLNEAVGQLVKEKEHIVSLLRS 397 (490)
Q Consensus 376 eLE~sV~~L~kEneDI~sLLRs 397 (490)
.....+..|.++...+..+|..
T Consensus 230 ~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 230 KDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777764
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.26 E-value=92 Score=34.96 Aligned_cols=88 Identities=27% Similarity=0.355 Sum_probs=56.6
Q ss_pred HhhhhhhhhhhHH---HHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223 202 GQIDATAKSRNDV---REQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (490)
Q Consensus 202 ~Qida~~ksrn~a---ReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V 278 (490)
.|++-+-+-+++- ..++++.+-+.-++|.+|++.+...+++...-....+.+..+......+...|..+...++.+|
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri 222 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRI 222 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555665553 4455666666667777777777777777776666666666655555555666666666677777
Q ss_pred HHHHHHhhhhh
Q 011223 279 NEYEDKLKNLE 289 (490)
Q Consensus 279 ~e~E~kl~~lE 289 (490)
.+|+..+.++.
T Consensus 223 ~~LEedi~~l~ 233 (546)
T PF07888_consen 223 RELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHH
Confidence 77766665554
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.04 E-value=1.4e+02 Score=36.46 Aligned_cols=173 Identities=14% Similarity=0.224 Sum_probs=86.5
Q ss_pred hhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCC
Q 011223 93 RSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGG 172 (490)
Q Consensus 93 ~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~ 172 (490)
+.+-++-+.|..++.......|+++...+.+.+-..-+..+......+++||+.-...+..--++++--.-.++.
T Consensus 398 ~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~----- 472 (1293)
T KOG0996|consen 398 REDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ----- 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 344455566666666667777777777776666555566666666777788777666665554444321111221
Q ss_pred CCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhh---hhcceeeeeehhhHHhhhhchHHHhhhhhh
Q 011223 173 LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQME---QRNFEIAIEVSELEATISGLREEVAKKSSF 249 (490)
Q Consensus 173 lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQme---qrny~IAIEVSqLEAsis~lr~eva~kss~ 249 (490)
+-.|+.+ -..+.-.+++..+ .|+-.+.---+-|+++++ ++--+--==|-.|..++..++....++...
T Consensus 473 -----~t~~~~~---e~~~~ekel~~~~-~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~ 543 (1293)
T KOG0996|consen 473 -----ETEGIRE---EIEKLEKELMPLL-KQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTE 543 (1293)
T ss_pred -----hhhhhHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112211 1122222222222 222211111222332221 000000001235566666667777777777
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 011223 250 IENLEKSLIEKDEKVAEIESQGLELRQLVN 279 (490)
Q Consensus 250 ~e~l~ks~~eke~~i~ele~E~~~lKe~V~ 279 (490)
+.+|...+.....++.+.++++..++....
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 777777777777777776665444444433
No 38
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.65 E-value=1.4e+02 Score=36.00 Aligned_cols=289 Identities=22% Similarity=0.337 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhh
Q 011223 31 RFREVLAELNRERQAREAAENSATELSE---KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNI 107 (490)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~---~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~ 107 (490)
.+++|..+|+-=|..|.---.-+-|++. .|.-|-.|---.+-+--++.|+=-.+-.++++++-..++.-.++++.-.
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad 311 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTAD 311 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777666665443333444432 2333333333444455566666666666778888888888777774322
Q ss_pred h-------------HHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 011223 108 A-------------KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (490)
Q Consensus 108 ~-------------~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP 174 (490)
. |-|.-.+==+.++. .+|+.+--++-|++|+++- | +
T Consensus 312 ~iEmaTldKEmAEERaesLQ~eve~lkE------r~deletdlEILKaEmeek------------G----------~--- 360 (1243)
T KOG0971|consen 312 AIEMATLDKEMAEERAESLQQEVEALKE------RVDELETDLEILKAEMEEK------------G----------S--- 360 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhc------------C----------C---
Confidence 1 11111111122232 2334444455566666654 1 0
Q ss_pred CCcccCCchhHHHHhhhchh---H-HHHHHHHhhhhhhh---hhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhh
Q 011223 175 RSQKYTGLPAVVYGVIKRTN---E-IVEELVGQIDATAK---SRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS 247 (490)
Q Consensus 175 ~SqKYtGL~Aiaygv~KRtn---e-iveell~Qida~~k---srn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~ks 247 (490)
|-|+..-|-.|+-+ . +=|-||+-+|-.+- +|..+---||-.|- |+++|.
T Consensus 361 ------~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s----E~~eL~-------------- 416 (1243)
T KOG0971|consen 361 ------DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS----ELEELR-------------- 416 (1243)
T ss_pred ------CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh----HHHHHH--------------
Confidence 11222222234332 1 33455666554432 23333333443332 222222
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhHH---HHHHHHHHHHHHhhhhhhhchhHHH---HhhhHHhHHHHHHHHHHHhcCCCc
Q 011223 248 SFIENLEKSLIEKDEKVAEIESQGL---ELRQLVNEYEDKLKNLESHRPLLVD---QLNYVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 248 s~~e~l~ks~~eke~~i~ele~E~~---~lKe~V~e~E~kl~~lE~qr~lL~d---ql~svs~Ihd~L~~vi~~vdd~k~ 321 (490)
..-|+|.+.+.+-|.+|+++...|- ..-+-|.-|-++-=|||++=++|-+ +|.-+.-|+++|.+.-+-+.
T Consensus 417 r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele---- 492 (1243)
T KOG0971|consen 417 RQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELE---- 492 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 2334555555555666665444211 1111222232333344555566655 44456667777776655443
Q ss_pred cccccccccCCCcccchh-----HHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh
Q 011223 322 DQSGLSESLFLPQETDME-----ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE 387 (490)
Q Consensus 322 ~~s~LsEs~f~~~etD~e-----e~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kE 387 (490)
.. +..|+|+- +-.+-.=+.+++|||+--++. |++.++-.=...+.++-+.+.++.+|
T Consensus 493 --~D------LreEld~~~g~~kel~~r~~aaqet~yDrdqTI~-KfRelva~Lqdqlqe~~dq~~Sseee 554 (1243)
T KOG0971|consen 493 --LD------LREELDMAKGARKELQKRVEAAQETVYDRDQTIK-KFRELVAHLQDQLQELTDQQESSEEE 554 (1243)
T ss_pred --HH------HHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11 12233433 222333466888999876653 66666655444455554444444444
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.45 E-value=32 Score=34.95 Aligned_cols=59 Identities=29% Similarity=0.360 Sum_probs=33.0
Q ss_pred eeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 227 IEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
.|+..|-+.+.-+..+++.+...+..|+..+...+.+|.++..+...+...|.+++...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555556666666666666655555555555555544333
No 40
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.36 E-value=1.1e+02 Score=37.13 Aligned_cols=189 Identities=21% Similarity=0.249 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhHHHHHHHHH--------------hHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHH
Q 011223 250 IENLEKSLIEKDEKVAEIES--------------QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKI 315 (490)
Q Consensus 250 ~e~l~ks~~eke~~i~ele~--------------E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~ 315 (490)
+.+|-+++-..+..++-+.. ..+.+.+++.+++..+.++|.-|..|+++|.++.-...--..+=+.
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~ 569 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQN 569 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 45555555555444443332 4556677888999999999999999998888776541111111111
Q ss_pred hcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHh-HHHHHhhH----HHHhhHHHHHHHHHHhhhh
Q 011223 316 VDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKT-RDLVQKKS----REVKSLNEAVGQLVKEKEH 390 (490)
Q Consensus 316 vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv-~~~~E~kk----kE~keLE~sV~~L~kEneD 390 (490)
.++..+ ....++.++-...+.-.=-.-++.+. +.|+-... +.+.-|-..+.-|.++|.|
T Consensus 570 ~n~lE~----------------~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kll~~Kkd 633 (1195)
T KOG4643|consen 570 NNDLEL----------------IHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKLLKEKKD 633 (1195)
T ss_pred hhHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhhcchhHH
Confidence 110000 11222222222221111111111221 23332222 1122333445556666666
Q ss_pred HHHHHHHHhhhhcccCCCCchhhHHHHHHhhhhhhccccchhcccCCCCCCCCccccCCccchhHHHHHHHHHHHHHHHH
Q 011223 391 IVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKA 470 (490)
Q Consensus 391 I~sLLRsALsEKea~E~eqkrseLLQiAE~GLrevGfgF~~~~i~Gdg~~e~S~d~~~~~seeedEVySLAsalEniMK~ 470 (490)
++.+..=-|. + .+ -..++.+ .||..---.|+ . + ..+....|+.|.+|=.+++|.++|.|+.
T Consensus 634 r~ree~kel~-----~--ek-l~ve~l~-e~l~~lp~~fk----t---~---n~e~l~V~sn~lEe~qr~~~~~sn~~~~ 694 (1195)
T KOG4643|consen 634 RNREETKELM-----D--EK-LQVEDLQ-EKLRELPLEFK----T---K---NDEILMVGSNILEERQRLGGCKSNAEID 694 (1195)
T ss_pred HHHHHHhhcc-----c--cc-hhHHHHH-HHHHhCchhhc----c---c---cchhhhhhhhhhhhhhhhccccccchHH
Confidence 6665543332 1 11 2333443 36766666665 1 1 2233345677777889999999999998
Q ss_pred HHH
Q 011223 471 SQL 473 (490)
Q Consensus 471 sql 473 (490)
++.
T Consensus 695 l~q 697 (1195)
T KOG4643|consen 695 LLQ 697 (1195)
T ss_pred HHH
Confidence 876
No 41
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=77.54 E-value=1.3e+02 Score=33.85 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=113.0
Q ss_pred HHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcc
Q 011223 49 AENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRS 128 (490)
Q Consensus 49 ae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~ 128 (490)
+....++++..+.+|+.=.-++.++=++..+.|..+-.+.-..+..-..+-.++..++.-...+.-.+..+-+.-..-+.
T Consensus 104 ~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~ 183 (546)
T KOG0977|consen 104 TARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLRE 183 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33456777788888887776666666666555554433333333333333333333333333333333222222222222
Q ss_pred hhhhhhhhhh---hhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCCchhHHHHhhhchh--HHHHHH-HH
Q 011223 129 QLDEVTKAKD---GLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTN--EIVEEL-VG 202 (490)
Q Consensus 129 ~~~~~~~~~~---~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtn--eiveel-l~ 202 (490)
+|..+-+.+| .|+.+..+...+|. +.|. |+++.+ +|.++. ..
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Ll---eel~-----------------------------f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLL---EELA-----------------------------FLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHH-----------------------------HHHhccHHHHHHHHHHH
Confidence 2222221111 25666667766664 3332 233332 444443 24
Q ss_pred hhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhh----hhHHHHHHHHHHhHHHHHHHH----------
Q 011223 203 QIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKS----SFIENLEKSLIEKDEKVAEIE---------- 268 (490)
Q Consensus 203 Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~ks----s~~e~l~ks~~eke~~i~ele---------- 268 (490)
++|.|+..| +... ++|-++|-.+|.+-..-+ ..||.| . ..||.++.
T Consensus 232 ~rd~t~~~r----~~F~----------~eL~~Ai~eiRaqye~~~~~nR~diE~~---Y---~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 232 RRDTTADNR----EYFK----------NELALAIREIRAQYEAISRQNRKDIESW---Y---KRKIQEIRTSAERANVEQ 291 (546)
T ss_pred hhcccccch----HHHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHH---H---HHHHHHHHhhhccccchh
Confidence 556664444 4333 467888888888765433 345555 3 34566666
Q ss_pred ----HhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHh
Q 011223 269 ----SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSK 304 (490)
Q Consensus 269 ----~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~ 304 (490)
.|+..+|..+..+-+++.+++..+..|..++.-+..
T Consensus 292 ~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ 331 (546)
T KOG0977|consen 292 NYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEY 331 (546)
T ss_pred HHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHh
Confidence 499999999999999999999999999998876543
No 42
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.09 E-value=1.9e+02 Score=35.11 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=67.6
Q ss_pred HHHHHhHHHHHhhH------HHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHHHhhhhhhccccch
Q 011223 358 IVVEKTRDLVQKKS------REVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKF 431 (490)
Q Consensus 358 eV~~Kv~~~~E~kk------kE~keLE~sV~~L~kEneDI~sLLRsALsEKea~E~eqkrseLLQiAE~GLrevGfgF~~ 431 (490)
.++.+.+--.++++ ++.+.|++.++.|.+.+.....+-+.+.+|++++..+..+.+.-
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s---------------- 458 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRS---------------- 458 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------
Confidence 45555555555544 34458999999999999999999999999998866444333211
Q ss_pred hcccCCCCCCCCccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011223 432 SKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEEL 485 (490)
Q Consensus 432 ~~i~Gdg~~e~S~d~~~~~seeedEVySLAsalEniMK~sqlEI~eLrhslEEs 485 (490)
++. -.--.+..+-+++++.-++.+-..++..|..|..+|+.+
T Consensus 459 ---~~r---------q~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r 500 (1195)
T KOG4643|consen 459 ---LSR---------QSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNR 500 (1195)
T ss_pred ---HHH---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 001223345588888888888888888888888777765
No 43
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=74.67 E-value=86 Score=32.56 Aligned_cols=76 Identities=20% Similarity=0.359 Sum_probs=50.8
Q ss_pred hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHh
Q 011223 290 SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQK 369 (490)
Q Consensus 290 ~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~ 369 (490)
..=|.|++-|.+++.||...-++...+.. .+..+.-+-..++.--.+-..|..++..-++.
T Consensus 312 ~~lP~lv~RL~tL~~lH~~a~~~~~~l~~-------------------le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~ 372 (388)
T PF04912_consen 312 PSLPSLVERLKTLKSLHEEAAEFSQTLSE-------------------LESQQSDLQSQLKKWEELLNKVEEKFKENMET 372 (388)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66688888888888888888888877762 33333333344444445555777777777777
Q ss_pred hHHHHhhHHHHHHHH
Q 011223 370 KSREVKSLNEAVGQL 384 (490)
Q Consensus 370 kkkE~keLE~sV~~L 384 (490)
=...++.|+..|..|
T Consensus 373 i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 373 IEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777777777777654
No 44
>PRK03918 chromosome segregation protein; Provisional
Probab=74.66 E-value=1.5e+02 Score=33.16 Aligned_cols=10 Identities=10% Similarity=-0.074 Sum_probs=4.1
Q ss_pred cccCCCCchh
Q 011223 17 IDVQTSSDED 26 (490)
Q Consensus 17 ~~~~~~~~~~ 26 (490)
|+-..|=.++
T Consensus 439 p~c~~~L~~~ 448 (880)
T PRK03918 439 PVCGRELTEE 448 (880)
T ss_pred CCCCCcCCch
Confidence 3444444333
No 45
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=74.52 E-value=16 Score=33.39 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=46.7
Q ss_pred HHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 011223 214 VREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (490)
Q Consensus 214 aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l 288 (490)
--.+|+++++.-.-+...+......+++......+.+..+.........++.++..+...+++.+..+...+..+
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677766666666666666666666666666777766666666666666655555555555544444333
No 46
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=74.02 E-value=18 Score=33.92 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=11.5
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 253 l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
+++.+..+...|+.++.++..|+.+|..++..+
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l 139 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEEL 139 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444
No 47
>PRK12704 phosphodiesterase; Provisional
Probab=73.19 E-value=25 Score=38.32 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=33.0
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
++.+.|..+..-.+.+.+|...++.-++.+..++..+...++++..++..+.+
T Consensus 83 ~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 83 ELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666655555566666667776666776666666666655555554433
No 48
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=72.80 E-value=71 Score=38.36 Aligned_cols=145 Identities=19% Similarity=0.221 Sum_probs=93.1
Q ss_pred CCCCcccCCchhHHH--Hhh--------hchhHHHHHHHHhhhhhhhhhhHHHHHh--------------hhhcc---ee
Q 011223 173 LPRSQKYTGLPAVVY--GVI--------KRTNEIVEELVGQIDATAKSRNDVREQM--------------EQRNF---EI 225 (490)
Q Consensus 173 lP~SqKYtGL~Aiay--gv~--------KRtneiveell~Qida~~ksrn~aReQm--------------eqrny---~I 225 (490)
.|.-+-|||.|-.+- ||+ +-++..++++=+||-.....|+++..-+ +|++- --
T Consensus 636 g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~ 715 (1074)
T KOG0250|consen 636 GPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKK 715 (1074)
T ss_pred CCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456777766665 443 3345556666666666665555553322 22211 11
Q ss_pred eeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh----hhchhHHHHhhh
Q 011223 226 AIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLNY 301 (490)
Q Consensus 226 AIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE----~qr~lL~dql~s 301 (490)
--|+-+|+-+ . ++-+..++.+++|.+-...+..+|.+.+..++.+++.+..++.+.+.++ +.+.-|-..+.-
T Consensus 716 ~~em~el~n~---~-e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~ 791 (1074)
T KOG0250|consen 716 RAEMTELKNT---A-EEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISK 791 (1074)
T ss_pred HHHHHHHhhh---h-hhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444443 1 3455667778888888888888888888888888888888887777666 667777778888
Q ss_pred HHhHHHHHHHHHHHhcCCCc
Q 011223 302 VSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 302 vs~Ihd~L~~vi~~vdd~k~ 321 (490)
+....+.|....+.+...+.
T Consensus 792 l~~l~~el~~r~dk~~s~e~ 811 (1074)
T KOG0250|consen 792 LDALKEELKLREDKLRSAED 811 (1074)
T ss_pred hhHHHHHHHHHHHHHhhhhh
Confidence 88888888877777776444
No 49
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.00 E-value=29 Score=28.78 Aligned_cols=52 Identities=29% Similarity=0.414 Sum_probs=36.3
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHH
Q 011223 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (490)
Q Consensus 252 ~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs 303 (490)
+|++-+.+||+.|+.|-.|++.|-...-.+..-++.|..+..-+-.++..+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566689999999999998888877776666666666655555554444443
No 50
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=70.70 E-value=1.8e+02 Score=32.80 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=37.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHH----------------HHHHHHHHhhhhHHHHHH
Q 011223 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLN----------------EAVGQLVKEKEHIVSLLR 396 (490)
Q Consensus 343 K~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE----------------~sV~~L~kEneDI~sLLR 396 (490)
+-.+..++.+.+-.+.+...+..+.|.-+.-..+++ +.|...-|.+.||...|.
T Consensus 443 ~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~ 512 (594)
T PF05667_consen 443 KQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILS 512 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344566667777666666666666665444444333 578899999999998884
No 51
>PRK03918 chromosome segregation protein; Provisional
Probab=70.17 E-value=1.9e+02 Score=32.39 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHH
Q 011223 34 EVLAELNRERQAREAAENSATELSEKFNRLKALA 67 (490)
Q Consensus 34 ~l~ael~~er~ar~aae~s~~e~~~~f~rlkala 67 (490)
++.+++..=+..-..++.....++..++.|....
T Consensus 204 ~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 237 (880)
T PRK03918 204 EVLREINEISSELPELREELEKLEKEVKELEELK 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444434444444444444444444444443
No 52
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=70.14 E-value=94 Score=34.54 Aligned_cols=161 Identities=26% Similarity=0.348 Sum_probs=101.4
Q ss_pred hhhhhhhHHHHHhhhhcceeeee----ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 011223 206 ATAKSRNDVREQMEQRNFEIAIE----VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (490)
Q Consensus 206 a~~ksrn~aReQmeqrny~IAIE----VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~ 281 (490)
-|..+|.--|.++|+|-..+-.+ .+.+=..|.++...|++=.+.|+.+.+.+......-..+-.++..|++.-..+
T Consensus 13 nt~~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~ 92 (618)
T PF06419_consen 13 NTLEARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEEL 92 (618)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668999999999997665554 46677778888888888888888888888777777777777777777766666
Q ss_pred HHHhhhhh---------------------hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhH
Q 011223 282 EDKLKNLE---------------------SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEE 340 (490)
Q Consensus 282 E~kl~~lE---------------------~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee 340 (490)
+.|-+-+. .-.+-.|+.|.-+..||+--..++ .. +
T Consensus 93 ~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL-~~-----------------------~ 148 (618)
T PF06419_consen 93 ELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILL-ST-----------------------E 148 (618)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CC-----------------------C
Confidence 55443222 112234444555555554433333 11 1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhh
Q 011223 341 NIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALS 400 (490)
Q Consensus 341 ~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~sLLRsALs 400 (490)
+.++-++=|+.+...-..+-+|+-.|. ......|..++.++..+||-||.
T Consensus 149 ~~~ag~~iM~~~~~~~e~a~erl~~w~----------q~e~~~l~~~~~~~~~~l~~al~ 198 (618)
T PF06419_consen 149 NQRAGLEIMEQMSKYLERAYERLYRWV----------QRECRSLNLDNPEVSPLLRRALR 198 (618)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhhhcCcccchHHHHHHH
Confidence 233444455555555556666777776 22333346778888888887776
No 53
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.23 E-value=1.5e+02 Score=30.54 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=39.0
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
+++.....++-.+|.+--.-++.+.....+.+++|.++..++..|+..|..++.-+ .++..+|-+++-
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~raR 108 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKRAR 108 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 34444444444455555555566666666666666666666666666666655555 356666666543
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.63 E-value=62 Score=35.19 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=49.4
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh----hhchhHHHHhhhHH
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVS 303 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE----~qr~lL~dql~svs 303 (490)
|..+++..|-..+++.++=-+.+-++++.+..-+..+.+.......+++.|..+++.+.-++ +++.+|..+|..+-
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665555556666666666666666666666777777777777776666 66677777766544
Q ss_pred h
Q 011223 304 K 304 (490)
Q Consensus 304 ~ 304 (490)
.
T Consensus 126 r 126 (420)
T COG4942 126 R 126 (420)
T ss_pred h
Confidence 4
No 55
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.22 E-value=2.2e+02 Score=31.60 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=15.6
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHhh
Q 011223 96 DKLSTEIAEVNIAKDEVVKQLDEVTK 121 (490)
Q Consensus 96 ~~~s~~l~~v~~~~de~~kq~~~~~~ 121 (490)
+.+..++.++..+.++++++++++-.
T Consensus 226 e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 226 EDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666665544
No 56
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.12 E-value=60 Score=33.27 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhhhhhhhhhHHHHHhhhhc--ceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhH
Q 011223 194 NEIVEELVGQIDATAKSRNDVREQMEQRN--FEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQG 271 (490)
Q Consensus 194 neiveell~Qida~~ksrn~aReQmeqrn--y~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~ 271 (490)
+-+++.|=.|++.+.+.|+.-.+-+.+=+ ....=++.+++..+..|..|-..-..+.+.|++.-.+-+..+..++.|.
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777788888887776555443333 1122234566667777777777777777777776666666677666655
Q ss_pred HHHHHHH
Q 011223 272 LELRQLV 278 (490)
Q Consensus 272 ~~lKe~V 278 (490)
..+++.-
T Consensus 88 ~~l~~eE 94 (314)
T PF04111_consen 88 EELDEEE 94 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 57
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=64.02 E-value=64 Score=37.43 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHhhHH--------HHHHHHhhhhhhHHHHHH-----HHHHHHH
Q 011223 27 FSVERFREVLAELNRERQAREAAE---NSATELSEKFNRLKA--------LAHESIKRRDESTRQRDE-----ALREKEE 90 (490)
Q Consensus 27 ~~~~~~~~l~ael~~er~ar~aae---~s~~e~~~~f~rlka--------la~ea~kkrde~~r~rd~-----a~r~ke~ 90 (490)
+--+++..|-.|.|.|=-+-=.+. ..+.-|..-|.+-|+ |...+-+=.+|+...=.+ .+++|-+
T Consensus 459 ~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle 538 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLD 538 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 556777777778877643322221 112222333444444 444466667788777777 7899999
Q ss_pred Hhhhcch---hhHHHHHHhhhHHHHHHHHHHHhh
Q 011223 91 ILRSNDK---LSTEIAEVNIAKDEVVKQLDEVTK 121 (490)
Q Consensus 91 ~~~~~~~---~s~~l~~v~~~~de~~kq~~~~~~ 121 (490)
+|++--+ +|.--.....-++++-|+|.++.-
T Consensus 539 ~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~ 572 (762)
T PLN03229 539 MLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMD 572 (762)
T ss_pred HHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcc
Confidence 9988766 343222355667888888888543
No 58
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=63.47 E-value=2.4e+02 Score=32.74 Aligned_cols=71 Identities=27% Similarity=0.353 Sum_probs=47.7
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHH
Q 011223 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV 309 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L 309 (490)
..+++.+..|.+ -+..|+++..+..++|..|+.++-.+....++..+.|..+- .-|.---.-+..+|..+
T Consensus 394 ~~~~~e~q~L~e-------kl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQ---DELvtfSEeLAqLYHHV 463 (717)
T PF09730_consen 394 DRLESEVQNLKE-------KLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQ---DELVTFSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455555544443 34567888888899999999999999999999888884433 33444444445555544
Q ss_pred H
Q 011223 310 D 310 (490)
Q Consensus 310 ~ 310 (490)
+
T Consensus 464 C 464 (717)
T PF09730_consen 464 C 464 (717)
T ss_pred H
Confidence 4
No 59
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.33 E-value=3.5e+02 Score=33.04 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=84.1
Q ss_pred hcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 221 RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 221 rny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
|--+.--+|+-||+.+..+..++.+..+-+......+..-+.++.++...+++++..+.+-+..+..-++-...+-+++.
T Consensus 288 rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~ 367 (1174)
T KOG0933|consen 288 RDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQ 367 (1174)
T ss_pred HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 55566678899999999999999999999999988898889999999998888888888777666665666777888888
Q ss_pred hHHhHHHHHHHHHHHhcCCCc
Q 011223 301 YVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 301 svs~Ihd~L~~vi~~vdd~k~ 321 (490)
..++....-.+.+..|..+..
T Consensus 368 ~~s~~~e~~e~~~eslt~G~S 388 (1174)
T KOG0933|consen 368 EDSKLLEKAEELVESLTAGLS 388 (1174)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 888888888888888876654
No 60
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.20 E-value=62 Score=31.43 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=39.2
Q ss_pred hHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHH
Q 011223 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELR 275 (490)
Q Consensus 212 n~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lK 275 (490)
+.++.+-.++-=+++=|-.+|.+.+..+..++..-....+.+++.+...+.+++++++++..+.
T Consensus 34 ~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 34 VQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444555666777777777777777777777777777666666666665444443
No 61
>smart00721 BAR BAR domain.
Probab=61.83 E-value=1.3e+02 Score=27.66 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=53.8
Q ss_pred hhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHH--HHHhHHHHHH
Q 011223 189 VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKS--LIEKDEKVAE 266 (490)
Q Consensus 189 v~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks--~~eke~~i~e 266 (490)
||.-........++.+..+.|-|+.+|-.|+.-. +.| +++.+. ....+ ++.+
T Consensus 121 ~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~-------~kl------------------~~~~~~~~~~~~~-kl~~ 174 (239)
T smart00721 121 FILPLLNFLLGEFKEIKKARKKLERKLLDYDSAR-------HKL------------------KKAKKSKEKKKDE-KLAK 174 (239)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-------HHH------------------HHHHHhccCChhh-hhhh
Confidence 3444444555666777777888888887776321 111 111111 00023 6666
Q ss_pred HHHhHHHHHHHHHHHHHHh----hhhhhh---------chhHHHHhhhHHhHHHHHHHHHHHhc
Q 011223 267 IESQGLELRQLVNEYEDKL----KNLESH---------RPLLVDQLNYVSKIHDQVDDIIKIVD 317 (490)
Q Consensus 267 le~E~~~lKe~V~e~E~kl----~~lE~q---------r~lL~dql~svs~Ihd~L~~vi~~vd 317 (490)
.+.+++..++.-+.+-..+ -.+-+. ..++.-|+.+...+++.|.++..-++
T Consensus 175 ~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 175 AEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7776666666655432222 222222 22333366677777777777766554
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.78 E-value=1.5e+02 Score=30.70 Aligned_cols=70 Identities=26% Similarity=0.388 Sum_probs=34.9
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
|..+|-+.|...-.++..+...++.++..+.....+|.+...+..++...|.+.+..+ +..|++=..-+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~---~~~r~~t~~Ei~ 274 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL---EQCRGFTFKEIE 274 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCHHHHH
Confidence 4444444454455555555555555555555555555544444444444444444433 345555444333
No 63
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=61.26 E-value=48 Score=31.17 Aligned_cols=67 Identities=30% Similarity=0.388 Sum_probs=40.7
Q ss_pred hhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 231 qLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
+....|..|+.+++.-...+..|+-.+.+|..-+..+.-|+..|.=-+..+|.+++.++.-+.-|++
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555655566666666655557777777777777777777755555544
No 64
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=60.99 E-value=57 Score=35.65 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=28.9
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V 278 (490)
+.+.|..+..-.+.+.+|...++.-++.+..++..+...++++..+.+..
T Consensus 78 L~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~ 127 (514)
T TIGR03319 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL 127 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655555555566666666666666666666665555555444433
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.39 E-value=2.7e+02 Score=30.82 Aligned_cols=15 Identities=7% Similarity=0.279 Sum_probs=6.1
Q ss_pred HhhhHHhHHHHHHHH
Q 011223 298 QLNYVSKIHDQVDDI 312 (490)
Q Consensus 298 ql~svs~Ihd~L~~v 312 (490)
.++++.++...|..+
T Consensus 481 ~~~~~~~~~~~l~~~ 495 (650)
T TIGR03185 481 AITIADKAKKTLKEF 495 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 66
>PRK14140 heat shock protein GrpE; Provisional
Probab=60.26 E-value=1e+02 Score=30.02 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 262 ~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
.+|.+++.++.+++++.-.+-+...|+.
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666555544444444
No 67
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.74 E-value=4.1e+02 Score=32.59 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=16.5
Q ss_pred cCCcchhhhhhhhhhhhhhhhhhhhhhhhhh
Q 011223 124 DGSRSQLDEVTKAKDGLRSEIENSAHMLVTG 154 (490)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg 154 (490)
+..+..+++.....+.+..++.....=|...
T Consensus 364 e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~ 394 (1353)
T TIGR02680 364 EEERRRLDEEAGRLDDAERELRAAREQLARA 394 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555666666665555544433
No 68
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=59.30 E-value=1.7e+02 Score=30.08 Aligned_cols=131 Identities=19% Similarity=0.282 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcc
Q 011223 27 FSVERFREVLAELNRERQAREAAENSATELSE----------KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSND 96 (490)
Q Consensus 27 ~~~~~~~~l~ael~~er~ar~aae~s~~e~~~----------~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~ 96 (490)
.-+.+|+.++.+|+.=...|..-+..+-+... ..+.++.+-++- |+.-+
T Consensus 192 ~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~lF~~e---------------------L~kf~ 250 (339)
T cd09238 192 SIVGTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDALFKEE---------------------LKKYD 250 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHHHHHHH---------------------HHHHh
Confidence 44788999999999888888776655533222 223333333332 33355
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhh----hhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCC
Q 011223 97 KLSTEIAEVNIAKDEVVKQLDEVTK----ARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGG 172 (490)
Q Consensus 97 ~~s~~l~~v~~~~de~~kq~~~~~~----~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~ 172 (490)
.+.+.|.+-...-+.+.++|..+-. .+++ ...+++-+...+.|-.+..+-.-..++
T Consensus 251 ~~~~~v~~~~~~Q~~ll~~i~~~n~~f~~~~~~------------~~~~~~re~~l~~L~~ay~~y~el~~~-------- 310 (339)
T cd09238 251 SVREAVSKNISSQDDLLSRLRALNEKFSQIFDV------------EGWRAATESHATQIRAAVAKYRELREG-------- 310 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------chhHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence 5555555544444445555543322 2222 112333344455555555433322222
Q ss_pred CCCC-cccCCchhHHHHhhhchhHHHH
Q 011223 173 LPRS-QKYTGLPAVVYGVIKRTNEIVE 198 (490)
Q Consensus 173 lP~S-qKYtGL~Aiaygv~KRtneive 198 (490)
|+.. .=|++|.-++-+|-+.+.+.|-
T Consensus 311 l~eG~kFY~dL~~~~~~l~~~~~~fv~ 337 (339)
T cd09238 311 MEEGLRFYSGFQEAVRRLKQECEDFVM 337 (339)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 2378999888888887777663
No 69
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=59.03 E-value=53 Score=28.71 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHH
Q 011223 250 IENLEKSLIEKDEKVAEIESQGLE 273 (490)
Q Consensus 250 ~e~l~ks~~eke~~i~ele~E~~~ 273 (490)
++.|...+...+.++..+|.++..
T Consensus 37 ~~~l~~~~~~~~~Rl~~lE~~l~~ 60 (106)
T PF10805_consen 37 IEKLEERLDEHDRRLQALETKLEH 60 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444445555555553333
No 70
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.64 E-value=4.2e+02 Score=32.42 Aligned_cols=86 Identities=13% Similarity=0.288 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHH---HHH
Q 011223 305 IHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLN---EAV 381 (490)
Q Consensus 305 Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE---~sV 381 (490)
||..+..+-..+++.+.-+..+-- .=+|++-.++..++..+.|..=-.++...+..|-.+--+.+++++ ..=
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~-----e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~R 469 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQK-----EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKR 469 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666542121111 113577788888887777665444444444444333333333333 233
Q ss_pred HHHHHhhhhHHHHH
Q 011223 382 GQLVKEKEHIVSLL 395 (490)
Q Consensus 382 ~~L~kEneDI~sLL 395 (490)
..|-+|..-+.+++
T Consensus 470 k~lWREE~~l~~~i 483 (1200)
T KOG0964|consen 470 KELWREEKKLRSLI 483 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554444
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.43 E-value=76 Score=29.04 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 011223 271 GLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 271 ~~~lKe~V~e~E~kl~~lE 289 (490)
+..|++.+..++.+|..|.
T Consensus 118 i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 118 IEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554444
No 72
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=57.41 E-value=3.5 Score=47.12 Aligned_cols=103 Identities=26% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHH
Q 011223 32 FREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE 111 (490)
Q Consensus 32 ~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de 111 (490)
+.+|.++|+..-+++-.+|...-.++..++-|++-+.+.=+.+.++ -..+.+|..++.++..+-++
T Consensus 161 ~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el--------------~~~k~kL~~E~~eL~~qLee 226 (859)
T PF01576_consen 161 LDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNEL--------------TEQKAKLQSENSELTRQLEE 226 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444444444444333333333 33445677777777766666
Q ss_pred HHHHHHHHhhhhc-------CCcchhhhhhhhhhhhhhhhhhhh
Q 011223 112 VVKQLDEVTKARD-------GSRSQLDEVTKAKDGLRSEIENSA 148 (490)
Q Consensus 112 ~~kq~~~~~~~~~-------~~~~~~~~~~~~~~~l~~Ei~~s~ 148 (490)
...++..+.+.+. +.+.+|++-++++..|.+.+.+.-
T Consensus 227 ~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le 270 (859)
T PF01576_consen 227 AESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLE 270 (859)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHH
Confidence 6666666655443 344455556666655555444433
No 73
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=56.80 E-value=1.5e+02 Score=32.63 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=8.5
Q ss_pred hhchHHHhhhh
Q 011223 237 SGLREEVAKKS 247 (490)
Q Consensus 237 s~lr~eva~ks 247 (490)
...|.|+|+.+
T Consensus 253 dp~rreia~~~ 263 (514)
T TIGR03319 253 DPVRREIARMA 263 (514)
T ss_pred chHHHHHHHHH
Confidence 45788999886
No 74
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.74 E-value=2.6e+02 Score=29.43 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=71.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCcccccccccc
Q 011223 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESL 330 (490)
Q Consensus 251 e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~ 330 (490)
..++-....-+.....|-.|++.+|++.+-- --.+=.+-..|-|-+.-.|.|+++|.+-|+.+.--+.
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q---~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaND--------- 122 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQ---RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAND--------- 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3333333333444444444555555554221 0001145556777777888888888888888775444
Q ss_pred CCCcccchhHHHHH---HHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHH
Q 011223 331 FLPQETDMEENIRA---SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLR 396 (490)
Q Consensus 331 f~~~etD~ee~lK~---sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~sLLR 396 (490)
|.+..-|+ +|+-+..=+.-|. --+.|+|..=-|+..|=++|.+|..|-+|..-=|-
T Consensus 123 ------dLErakRati~sleDfeqrLnqAI----ErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 123 ------DLERAKRATIYSLEDFEQRLNQAI----ERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred ------HHHHhhhhhhhhHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333 2333332222121 13567777777888888999999999999887663
No 75
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=56.43 E-value=59 Score=30.39 Aligned_cols=72 Identities=35% Similarity=0.415 Sum_probs=0.0
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHh
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql 299 (490)
+++.+-..+.+|..|+..=+++-++|.+.+-.+.++|++|+.-...+...+...|..-..+..--..-+.+|
T Consensus 60 el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L 131 (140)
T PF10473_consen 60 ELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEML 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 76
>PRK12704 phosphodiesterase; Provisional
Probab=55.72 E-value=1.6e+02 Score=32.45 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=10.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhc
Q 011223 138 DGLRSEIENSAHMLVTGIEKISG 160 (490)
Q Consensus 138 ~~l~~Ei~~s~~mL~sg~Ekis~ 160 (490)
+.++.+++....=...-+|+|+|
T Consensus 127 e~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 127 EKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444444444444555543
No 77
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=54.64 E-value=1.9e+02 Score=27.26 Aligned_cols=87 Identities=23% Similarity=0.322 Sum_probs=65.2
Q ss_pred hHHhhhhchHHHhhhhh-hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHH
Q 011223 232 LEATISGLREEVAKKSS-FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVD 310 (490)
Q Consensus 232 LEAsis~lr~eva~kss-~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~ 310 (490)
.+.++..=++++|+.+- ....++..+..-...+......+..|+..+..++.++.+++.++..|.-+.. ..+.+..+.
T Consensus 74 A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~-~a~a~~~~~ 152 (221)
T PF04012_consen 74 AELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAREN-AAKAQKKVN 152 (221)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34555555777776653 3445566667777888888889999999999999999999999998777665 667777777
Q ss_pred HHHHHhcCC
Q 011223 311 DIIKIVDDG 319 (490)
Q Consensus 311 ~vi~~vdd~ 319 (490)
..+..++.+
T Consensus 153 ~~~~~~~~~ 161 (221)
T PF04012_consen 153 EALASFSVS 161 (221)
T ss_pred HHhccCCcc
Confidence 777766633
No 78
>PF13166 AAA_13: AAA domain
Probab=54.55 E-value=3.3e+02 Score=29.88 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=24.5
Q ss_pred hHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhh
Q 011223 184 AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQ 220 (490)
Q Consensus 184 Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeq 220 (490)
.-....+...|..+++.=..++.-.+..+.++.....
T Consensus 366 ~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~ 402 (712)
T PF13166_consen 366 DELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWL 402 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777776767777655543
No 79
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=53.92 E-value=1.1e+02 Score=27.24 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 011223 196 IVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (490)
Q Consensus 196 iveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~el 267 (490)
.++.++.+.+. .+.-+..++.+-..|-++|=..-.++..+..+|.++..+...+..|..+..++..+...+
T Consensus 18 ~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 18 KLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 344556666677777777766667778888888888888888888877776666655543
No 80
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=53.23 E-value=2.1e+02 Score=27.27 Aligned_cols=106 Identities=22% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhH
Q 011223 30 ERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAK 109 (490)
Q Consensus 30 ~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~ 109 (490)
..+.+++++.|.=.+.-+.|-.-+++....|++..-=-.-..=-.-.--.-+=..+|++|. ++-..|
T Consensus 41 ~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~-------------qLr~rR 107 (159)
T PF05384_consen 41 EEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK-------------QLRERR 107 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
Q ss_pred HHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 011223 110 DEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKIS 159 (490)
Q Consensus 110 de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis 159 (490)
|++.+.|.+.-.- +.|| +.|=+.|+-+...|.+++..++
T Consensus 108 D~LErrl~~l~~t----------ierA-E~l~sqi~vvl~yL~~dl~~v~ 146 (159)
T PF05384_consen 108 DELERRLRNLEET----------IERA-ENLVSQIGVVLNYLSGDLQQVS 146 (159)
T ss_pred HHHHHHHHHHHHH----------HHHH-HHHHHHHHHHHHHHHhhHHHHH
No 81
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.65 E-value=1e+02 Score=34.20 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~ 321 (490)
+-.+|+++--+..-+....++-..+-.||-.++++++...-+.++=..|.+|++|.-+.|..+-.+++.+-.+|-
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~eke 370 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKE 370 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334555544443344444444444555555556666666555566678889999999999999999998776654
No 82
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.60 E-value=1.9e+02 Score=26.67 Aligned_cols=74 Identities=19% Similarity=0.388 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH--------------hH
Q 011223 206 ATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES--------------QG 271 (490)
Q Consensus 206 a~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~--------------E~ 271 (490)
+|.|+=.+|...+-+ -+-|+=++|+.-|.++..| ++.|...+-+-.+-...+.. ++
T Consensus 36 vTrr~m~~A~~~v~k-------ql~~vs~~l~~tKkhLsqR---Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 36 VTRRSMSDAVASVSK-------QLEQVSESLSSTKKHLSQR---IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455555555543322 2334455666666666544 33443334333333333333 44
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 011223 272 LELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 272 ~~lKe~V~e~E~kl~~lE 289 (490)
..+...|.-||+||..++
T Consensus 106 ~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 106 DSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444445555555554443
No 83
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.42 E-value=1.6e+02 Score=28.29 Aligned_cols=71 Identities=15% Similarity=0.202 Sum_probs=34.3
Q ss_pred hhhHHhhhhchHHHhhhhhh-HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 230 SELEATISGLREEVAKKSSF-IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~-~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
.+-+.++..=++++|+.+-. -...+..+..-+..+..+..-+..|+..+..|+.++..++.++..|.-...
T Consensus 73 ~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 73 EKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777766521 111111111222233333345556666666666666666666665544443
No 84
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=52.34 E-value=2.2e+02 Score=27.26 Aligned_cols=106 Identities=22% Similarity=0.434 Sum_probs=54.3
Q ss_pred hHHHHHHHHhhhhhh--------hhhhHHHHHhhhhcceeeeeehhhHHhhh-hchHHHhhhhhhHHHHHHHHHHhHHHH
Q 011223 194 NEIVEELVGQIDATA--------KSRNDVREQMEQRNFEIAIEVSELEATIS-GLREEVAKKSSFIENLEKSLIEKDEKV 264 (490)
Q Consensus 194 neiveell~Qida~~--------ksrn~aReQmeqrny~IAIEVSqLEAsis-~lr~eva~kss~~e~l~ks~~eke~~i 264 (490)
+.+.+||+||+-.-- +=||+.+.-+.. | ....+.++. |.|.-+ ..+. ...+.+.+|
T Consensus 65 ~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~--y-----~~l~~s~~~f~~rk~l-----~~e~---~~~~l~~~i 129 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDA--Y-----QTLYESSIAFGMRKAL-----QAEQ---GKQELEEEI 129 (189)
T ss_pred HHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHH-----HHHH---HHHHHHHHH
Confidence 456799999997754 445555443332 3 233444443 222222 2221 133445555
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhh--------hhchhHHHHhhhHHhHHHHHHHHHH
Q 011223 265 AEIESQGLELRQLVNEYEDKLKNLE--------SHRPLLVDQLNYVSKIHDQVDDIIK 314 (490)
Q Consensus 265 ~ele~E~~~lKe~V~e~E~kl~~lE--------~qr~lL~dql~svs~Ihd~L~~vi~ 314 (490)
+.++.+...|+..+.++..+...++ ...+...+.+..+.....+|.+-++
T Consensus 130 ~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 130 EELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555444443332 3345556667777666666665544
No 85
>PRK09039 hypothetical protein; Validated
Probab=52.04 E-value=1.8e+02 Score=30.12 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=41.8
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHH-HHHHHHHhhhh
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQL-VNEYEDKLKNL 288 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~-V~e~E~kl~~l 288 (490)
|.-|-+-|..||..++.=.+.++..+....+...+|..++.++...... |.++...-.++
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4456666777777778878888888888888888888888876666533 55555443333
No 86
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=52.01 E-value=4.4e+02 Score=30.69 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHH
Q 011223 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHD 307 (490)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd 307 (490)
.+++-+|+++|..-+.+-+.|-.-+.++...+....+.+.+..++-.-|..+++.+.+++.
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~ 324 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQE 324 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4556666666655555444444444455555555555555555666666677777776554
No 87
>PRK14141 heat shock protein GrpE; Provisional
Probab=51.46 E-value=1.2e+02 Score=29.94 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=13.5
Q ss_pred hHHHHHHHhhhhhHHHHH
Q 011223 339 EENIRASLAGMESIYQLT 356 (490)
Q Consensus 339 ee~lK~sL~g~ksI~eLA 356 (490)
...++.+..|+++|+..-
T Consensus 110 ~~~~~~l~eGv~mi~k~l 127 (209)
T PRK14141 110 DAGLKALIEGVEMTERAM 127 (209)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 446788889999888733
No 88
>PRK14161 heat shock protein GrpE; Provisional
Probab=49.52 E-value=2.5e+02 Score=27.06 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 252 ~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
-+++.+.--.++|.+++.++.+++++.-.+-+...|+.
T Consensus 16 ~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 16 IAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555566666666666555555444443
No 89
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.12 E-value=63 Score=38.89 Aligned_cols=73 Identities=29% Similarity=0.351 Sum_probs=58.6
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
||++.|..|+||--.++......+.+.+++...+.++.-++.++..+.-.+.++.-++.+.+....=|-.+++
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n 749 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMN 749 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888888887766666666666666666655555555544
No 90
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.86 E-value=1.9e+02 Score=27.51 Aligned_cols=77 Identities=25% Similarity=0.383 Sum_probs=34.5
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHH-------HHHHhHHHHHHHHHHHHHHhhhh----hhhchhHHHH
Q 011223 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVA-------EIESQGLELRQLVNEYEDKLKNL----ESHRPLLVDQ 298 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~-------ele~E~~~lKe~V~e~E~kl~~l----E~qr~lL~dq 298 (490)
..|...|..++.++..+-..++.+...+..+...++ ...+.+..+.+.+......+..+ ...|..|+.+
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~ 152 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQE 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554444433 11222333333333333333221 2455556655
Q ss_pred hhhHHhHH
Q 011223 299 LNYVSKIH 306 (490)
Q Consensus 299 l~svs~Ih 306 (490)
+..+=+|.
T Consensus 153 l~~ifpI~ 160 (302)
T PF10186_consen 153 LSEIFPIE 160 (302)
T ss_pred HHHHhCce
Confidence 55555553
No 91
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=48.82 E-value=54 Score=37.33 Aligned_cols=62 Identities=26% Similarity=0.444 Sum_probs=39.7
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhch
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRP 293 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~ 293 (490)
|++.|++-+.++|.++- ...+. .+-+..++.+|..|+++..+-+.+|++|+.+|..++.-+.
T Consensus 451 eie~L~~~l~~~~r~~~--~~~~~--~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 451 EIEKLESELERFRREVR--DKVRK--DREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555544 22222 2345567888888888888888888888888866664444
No 92
>PRK00106 hypothetical protein; Provisional
Probab=48.53 E-value=3e+02 Score=30.77 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=8.3
Q ss_pred hhchHHHhhhh
Q 011223 237 SGLREEVAKKS 247 (490)
Q Consensus 237 s~lr~eva~ks 247 (490)
...|.|||+.+
T Consensus 274 dpvRReiAr~~ 284 (535)
T PRK00106 274 DPIRREIARMT 284 (535)
T ss_pred ChHHHHHHHHH
Confidence 44688888876
No 93
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=47.50 E-value=5.4e+02 Score=30.35 Aligned_cols=158 Identities=24% Similarity=0.291 Sum_probs=108.4
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHH--------------HHHhHHHHHHHHHhHHHHHHHH-HHHHHHhhhhhhhchhHH
Q 011223 232 LEATISGLREEVAKKSSFIENLEKS--------------LIEKDEKVAEIESQGLELRQLV-NEYEDKLKNLESHRPLLV 296 (490)
Q Consensus 232 LEAsis~lr~eva~kss~~e~l~ks--------------~~eke~~i~ele~E~~~lKe~V-~e~E~kl~~lE~qr~lL~ 296 (490)
||--+..||-.|+.++..++.|... +..-+-+|+.++.|+..+++.. +..+-..++++++.-+=.
T Consensus 592 lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~ 671 (786)
T PF05483_consen 592 LENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEE 671 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHH
Confidence 4555778888899888888887532 2333667777777888887755 445556666676666666
Q ss_pred HHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhHH-----HHHHHhhhhhHHHHHHHHHHHhHHHHHhhH
Q 011223 297 DQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEEN-----IRASLAGMESIYQLTRIVVEKTRDLVQKKS 371 (490)
Q Consensus 297 dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~-----lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kk 371 (490)
.-++-|.+++-.-.+-|+.= .|||..=- +-++.+--++=|| +||+.|=..+...++
T Consensus 672 ~L~~EveK~k~~a~EAvK~q-----------------~EtdlrCQhKIAeMVALMEKHK~qYD--kiVEEkDaEL~~~k~ 732 (786)
T PF05483_consen 672 ELLGEVEKAKLTADEAVKLQ-----------------EETDLRCQHKIAEMVALMEKHKHQYD--KIVEEKDAELGLYKK 732 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhH-----------------HHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHH
Confidence 66666777666655555432 34454433 3345566666666 899999999999888
Q ss_pred HHHh------hHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCC
Q 011223 372 REVK------SLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPS 408 (490)
Q Consensus 372 kE~k------eLE~sV~~L~kEneDI~sLLRsALsEKea~E~e 408 (490)
++.- .|+..++.|.-+.-.+-.=|..-..+|+.+..+
T Consensus 733 KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~e~~eKE~l~~e 775 (786)
T PF05483_consen 733 KEQEQSSHKASLELELSNLKNELSSLKKQLKTERTEKEKLKKE 775 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc
Confidence 8754 777788888777777777788888888776543
No 94
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=47.44 E-value=6.2e+02 Score=31.02 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=47.5
Q ss_pred HHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHH-----hhhhhhHHHHHHHHHHhH
Q 011223 187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEV-----AKKSSFIENLEKSLIEKD 261 (490)
Q Consensus 187 ygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~ev-----a~kss~~e~l~ks~~eke 261 (490)
+--+-.|.++|..+..-|+--.|-=.++.++..+=| .++.+.-.+-.|+.+. ..+.-.+.+++.....++
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~-----~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~q 294 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLE-----QLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQ 294 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554445544443221 1333333333333332 233334444445555555
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhc
Q 011223 262 EKVAEIESQGLELRQLVNEYEDKLKNLESHR 292 (490)
Q Consensus 262 ~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr 292 (490)
.+++.++..++..-.+++++..++.+.+++-
T Consensus 295 ek~~~l~~ki~~~~~k~~~~r~k~teiea~i 325 (1074)
T KOG0250|consen 295 EKVDTLQEKIEEKQGKIEEARQKLTEIEAKI 325 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 5555555555555555555555554444443
No 95
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=47.15 E-value=1.7e+02 Score=31.73 Aligned_cols=79 Identities=15% Similarity=0.321 Sum_probs=32.2
Q ss_pred hchhHHHHHHHHhhhhh-----hhhhhHHHHHh-------hhhcceeeeeehhhHHhhhhchHHHhhhhh-----hHHHH
Q 011223 191 KRTNEIVEELVGQIDAT-----AKSRNDVREQM-------EQRNFEIAIEVSELEATISGLREEVAKKSS-----FIENL 253 (490)
Q Consensus 191 KRtneiveell~Qida~-----~ksrn~aReQm-------eqrny~IAIEVSqLEAsis~lr~eva~kss-----~~e~l 253 (490)
+.+.+.+..+..|+.+- .-+-+-.|-.| ..+...+-=-|..|+..|-.||.+|+.|-. .++.+
T Consensus 172 ~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v 251 (424)
T PF03915_consen 172 SEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETV 251 (424)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHH
Confidence 44566777777776541 11111123333 333333334488899999999999998753 45555
Q ss_pred HHHHHHhHHHHHHHHH
Q 011223 254 EKSLIEKDEKVAEIES 269 (490)
Q Consensus 254 ~ks~~eke~~i~ele~ 269 (490)
.+.+..-...|..++.
T Consensus 252 ~kdi~~a~~~L~~m~~ 267 (424)
T PF03915_consen 252 AKDISRASKELKKMKE 267 (424)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555544444544444
No 96
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=47.08 E-value=42 Score=29.20 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=41.5
Q ss_pred eeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHh---HHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 225 IAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK---DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 225 IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~ek---e~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
||-|+.-||..|+..|..+. .+++.+--. ...-..+|+|+..++..+..+|.+|+.|.
T Consensus 3 V~~eId~lEekl~~cr~~le-------~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLE-------AVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------HHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 56677788888877777653 333333222 23334578999999999999999999988
No 97
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=46.78 E-value=7.7e+02 Score=31.93 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHH
Q 011223 32 FREVLAELN----RERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDE 83 (490)
Q Consensus 32 ~~~l~ael~----~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~ 83 (490)
|.+-.++++ +--..+-.+|..++++..+..+|+.--.+...+++.+.-....
T Consensus 29 l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~ 84 (1822)
T KOG4674|consen 29 LPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSD 84 (1822)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 3334566788899999999999999888888887766655554
No 98
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.57 E-value=2.2e+02 Score=25.26 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCccc---------------
Q 011223 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQET--------------- 336 (490)
Q Consensus 272 ~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~et--------------- 336 (490)
..+......|...+..+..+..-|-..+.-+....+.|..+-..-++... ---|..++|+|...
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~-lvplg~~~yv~~~v~~~~kV~v~lG~g~~ 87 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKET-LVPIGAGSFVKAKVKDKDKVIVSLGAGYS 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeE-EEEcCCCcEEEEEecCCCeEEEEcCCCEE
Confidence 34444444444445444555555555555555555555554433222221 12556667765554
Q ss_pred ---chhHHHHHHHhhhhhHHH
Q 011223 337 ---DMEENIRASLAGMESIYQ 354 (490)
Q Consensus 337 ---D~ee~lK~sL~g~ksI~e 354 (490)
++++.+..+=.....+-.
T Consensus 88 vE~~~~eA~~~l~~~~~~l~~ 108 (140)
T PRK03947 88 AEKDLDEAIEILDKRKEELEK 108 (140)
T ss_pred EEecHHHHHHHHHHHHHHHHH
Confidence 566666665555544444
No 99
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.36 E-value=1.8e+02 Score=24.32 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=38.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhc
Q 011223 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (490)
Q Consensus 251 e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vd 317 (490)
+.|+..+..-=..|..|..|++.||+....+......|...+.-|-. --..+.++|..++..++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~---e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ---ERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Confidence 44444444445566777778888888877776666555555444442 23445566666666554
No 100
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=43.13 E-value=64 Score=29.93 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=37.8
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
++-|.|.|..+|..+...-..+..|+..+..||.+|. .||+.+.++...-
T Consensus 75 ~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~-------~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 75 VARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEID-------RLREKLDELNRAN 124 (131)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4557888888888888888889999999999999988 5555555544433
No 101
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.71 E-value=1.8e+02 Score=34.68 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=56.4
Q ss_pred HHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223 199 ELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (490)
Q Consensus 199 ell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V 278 (490)
.|.++.--...---.+++|-|---|+.-+|++.|+.-.++||.|+....+..-.| -.++..|+..+|++...|+...
T Consensus 488 ~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl---~eer~qklk~le~q~s~lkk~l 564 (913)
T KOG0244|consen 488 PLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKL---GEERVQKLKSLETQISLLKKKL 564 (913)
T ss_pred HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHhh
Confidence 3444433322333467888888889999999999999999999999888733333 5566778887777777766655
Q ss_pred HH
Q 011223 279 NE 280 (490)
Q Consensus 279 ~e 280 (490)
..
T Consensus 565 ~~ 566 (913)
T KOG0244|consen 565 SS 566 (913)
T ss_pred HH
Confidence 44
No 102
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.69 E-value=1.3e+02 Score=28.12 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=48.1
Q ss_pred CCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHH
Q 011223 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIE 259 (490)
Q Consensus 180 tGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~e 259 (490)
||..-..+-+|.|+--++-+++...+.....+..+...-+.. -...+++.++...+++.|.+.+..
T Consensus 107 sGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~--------------~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 107 SGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAA--------------EKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhhhhhhHHHHHHHHHHHHH
Confidence 699999999999999999988887766555555443322111 000445556666777777666666
Q ss_pred hHHHHHHHHH
Q 011223 260 KDEKVAEIES 269 (490)
Q Consensus 260 ke~~i~ele~ 269 (490)
++..+..+.+
T Consensus 173 ~~~~~~~Lkk 182 (192)
T PF05529_consen 173 KEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHH
Confidence 5555554333
No 103
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.27 E-value=6.2e+02 Score=29.30 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=10.4
Q ss_pred HHHHhhHHHHHHHHHhhHHHHHH
Q 011223 47 EAAENSATELSEKFNRLKALAHE 69 (490)
Q Consensus 47 ~aae~s~~e~~~~f~rlkala~e 69 (490)
+++..-..++....+.++.+.++
T Consensus 339 ~~l~~~~~~l~~~~~~~~~~~~~ 361 (908)
T COG0419 339 EKLESELEELAEEKNELAKLLEE 361 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 104
>PRK11546 zraP zinc resistance protein; Provisional
Probab=40.75 E-value=64 Score=30.41 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=41.8
Q ss_pred HhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 011223 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYED 283 (490)
Q Consensus 234 Asis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~ 283 (490)
+....||+++..|..+...|.-+-.-.+++|.++.+|+..|+..+.+.-.
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888889999999999888788899999999999999998876533
No 105
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.66 E-value=1.2e+02 Score=31.35 Aligned_cols=43 Identities=19% Similarity=0.347 Sum_probs=31.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHH
Q 011223 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS 303 (490)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs 303 (490)
..++.+.|+++.+++++|.++-++|.+|+..+--|.+.+.++.
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556668888888888888888888888888777654
No 106
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=40.41 E-value=7.5e+02 Score=29.98 Aligned_cols=75 Identities=28% Similarity=0.349 Sum_probs=55.7
Q ss_pred chhHHHHHHHHhhhh---hhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHH
Q 011223 192 RTNEIVEELVGQIDA---TAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268 (490)
Q Consensus 192 Rtneiveell~Qida---~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele 268 (490)
--|+-|+++=+|.+. -+.+-.++-++|+|----..+|+-+|.-+++.+...-+...+..+.+ +.+||...+++-
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~---l~~KD~~~~~~~ 546 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDL---LKQKDRLAAELV 546 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHhhHHHHHHHH
Confidence 345666666666555 55566677788887666677888899999999999999888888888 777877776554
Q ss_pred H
Q 011223 269 S 269 (490)
Q Consensus 269 ~ 269 (490)
.
T Consensus 547 ~ 547 (980)
T KOG0980|consen 547 A 547 (980)
T ss_pred H
Confidence 3
No 107
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.32 E-value=8.4e+02 Score=30.54 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHH--HHHHHHHhhhcchhhHHHHHHhhhHHHHHH
Q 011223 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEA--LREKEEILRSNDKLSTEIAEVNIAKDEVVK 114 (490)
Q Consensus 37 ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a--~r~ke~~~~~~~~~s~~l~~v~~~~de~~k 114 (490)
..++..-++...++.--.+++.-+.++|.-..+.-+ .+...+|-..+ .+--.+.-..+.++++.+.+.....+++++
T Consensus 451 ~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 451 EKLDEKCQAVAELEEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556777777888888888877766654 23222221110 000011111234566666666666666666
Q ss_pred HHHHH
Q 011223 115 QLDEV 119 (490)
Q Consensus 115 q~~~~ 119 (490)
..++.
T Consensus 530 ~~~~~ 534 (1317)
T KOG0612|consen 530 KNDNA 534 (1317)
T ss_pred HHHHH
Confidence 66654
No 108
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.43 E-value=2.5e+02 Score=26.25 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=28.6
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHH---hHHHHHHHHHHHHHHhh
Q 011223 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIES---QGLELRQLVNEYEDKLK 286 (490)
Q Consensus 239 lr~eva~kss~~e~l~ks~~eke~~i~ele~---E~~~lKe~V~e~E~kl~ 286 (490)
.+..+...-+..++|..++.+++..|..|.. -+++|+..|..|..+.+
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4444455555666666666666666666665 55566666666655554
No 109
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.27 E-value=3.8e+02 Score=25.98 Aligned_cols=104 Identities=24% Similarity=0.391 Sum_probs=68.1
Q ss_pred CCCCcccCCch--------hHHHHhhhchhHHHHHHHH-hhhhhh---hhhhHHHHHhhhhcceeeeeehhhHHhhhhch
Q 011223 173 LPRSQKYTGLP--------AVVYGVIKRTNEIVEELVG-QIDATA---KSRNDVREQMEQRNFEIAIEVSELEATISGLR 240 (490)
Q Consensus 173 lP~SqKYtGL~--------Aiaygv~KRtneiveell~-Qida~~---ksrn~aReQmeqrny~IAIEVSqLEAsis~lr 240 (490)
+|-+.-|.+|. .+|.|..-=.-.+|+.+-+ |+|.-. -+-...=..+|..+|.+.-=-|.|.- +-.++
T Consensus 24 vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k-LL~lk 102 (190)
T PF05266_consen 24 VPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNK-LLSLK 102 (190)
T ss_pred CCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHH-HHHHH
Confidence 67777777766 5677777777777777765 444321 12233455778999988776677766 44677
Q ss_pred HHHhhhhhhHHHHHHHHHHh-------HHHHHHHHHhHHHHHHH
Q 011223 241 EEVAKKSSFIENLEKSLIEK-------DEKVAEIESQGLELRQL 277 (490)
Q Consensus 241 ~eva~kss~~e~l~ks~~ek-------e~~i~ele~E~~~lKe~ 277 (490)
++-.+.......+++.+.++ +.+|.+|+..+.+|++.
T Consensus 103 ~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 103 DDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888 44444444444444443
No 110
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=38.22 E-value=2.8e+02 Score=28.14 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhH
Q 011223 260 KDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (490)
Q Consensus 260 ke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~sv 302 (490)
.+..++.|..|+..++++...++.+|.++.....-|-+++..+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l 129 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777777777766655555555544433
No 111
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=37.75 E-value=94 Score=26.75 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=13.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 262 EKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 262 ~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
.+|..++..|..|-+.|..+|...+.||
T Consensus 66 ~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 66 QQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554444
No 112
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.26 E-value=4.2e+02 Score=26.22 Aligned_cols=115 Identities=25% Similarity=0.261 Sum_probs=79.5
Q ss_pred hhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcc
Q 011223 144 IENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNF 223 (490)
Q Consensus 144 i~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny 223 (490)
+++|.+=|...++|.-+-+++|+.. +..|. |-+.+.++-|-.+-...-.=+.-|-++++.=|-
T Consensus 88 ~E~sfsdl~~ryek~K~vi~~~k~N----------EE~Lk-------k~~~ey~~~l~~~eqry~aLK~hAeekL~~ANe 150 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEVIEGYKKN----------EETLK-------KCIEEYEERLKKEEQRYQALKAHAEEKLEKANE 150 (207)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHh----------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677778888888888877762 11222 223344444443333333344556699999999
Q ss_pred eeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 011223 224 EIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (490)
Q Consensus 224 ~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E 282 (490)
+|+=-.++..+-+..|+-.+-+--..+.+|++++..|...+. +|-..|++|=
T Consensus 151 ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~-------ELtkICDeLI 202 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENE-------ELTKICDELI 202 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 999888888888888888888888889999999988888777 4444666553
No 113
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=37.19 E-value=3.2e+02 Score=27.41 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=52.3
Q ss_pred hhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhH
Q 011223 231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKI 305 (490)
Q Consensus 231 qLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~I 305 (490)
+|++.+++.+...+..---+|+...+.-+.+..-.++..+..-|++.+..+-.++.++..-.|-.++-+.-..+.
T Consensus 85 eLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 85 ELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 466666666666666666677777776666666668888888888877777777777777777666665555555
No 114
>PRK00106 hypothetical protein; Provisional
Probab=36.84 E-value=2.3e+02 Score=31.71 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=53.8
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh-hhhh--------hhchhHHHHh
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL-KNLE--------SHRPLLVDQL 299 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl-~~lE--------~qr~lL~dql 299 (490)
+.+.|..+..-.+.+.+|...++.-++.+..++..+...++++...++.+..+..+. ..|+ +-+..|++++
T Consensus 99 L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~ 178 (535)
T PRK00106 99 LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAET 178 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 556666665555666777777777777777777777666666665555544332221 1122 4455555554
Q ss_pred h---------------------hHHhHHHHHHHHHHHhcCCCc
Q 011223 300 N---------------------YVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 300 ~---------------------svs~Ihd~L~~vi~~vdd~k~ 321 (490)
. .=.+-+++|...|.+...+.+
T Consensus 179 ~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~~~~ 221 (535)
T PRK00106 179 ENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAGEYV 221 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3 122334557777777777765
No 115
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=36.47 E-value=2.1e+02 Score=26.23 Aligned_cols=96 Identities=20% Similarity=0.323 Sum_probs=53.5
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCC
Q 011223 97 KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRS 176 (490)
Q Consensus 97 ~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~S 176 (490)
+++.+|.-+-.+-=.|-++|-.+......+... .+...-+..++.+...-=.|- -..|| |.+-.+|..|
T Consensus 4 ~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~-~~~~~el~~lq~qL~eIe~~R-----~~DGK---F~~~~~g~~~-- 72 (134)
T PF10303_consen 4 PISPELQPIYEKLISIRRSLLSLNTRSKFSDSS-EESSSELKPLQEQLKEIESMR-----DVDGK---FVSPDTGEVP-- 72 (134)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhccCCCccc-cccHHHHHHHHHHHHHHHHhc-----cCCCC---eeCCCCCCCC--
Confidence 455566655555556667777666554333111 222333444555544333332 12333 3332122222
Q ss_pred cccCCchhHHHHhhhchhHHHHHHHHhhhh
Q 011223 177 QKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206 (490)
Q Consensus 177 qKYtGL~Aiaygv~KRtneiveell~Qida 206 (490)
-|-++++-|.+-+.++++++|..+-++
T Consensus 73 ---~~gQ~~l~~LLd~C~~li~dl~~~~~~ 99 (134)
T PF10303_consen 73 ---PGGQAVLNGLLDDCFDLIEDLLERKGE 99 (134)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 256899999999999999999987764
No 116
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.22 E-value=5.5e+02 Score=27.17 Aligned_cols=57 Identities=12% Similarity=0.202 Sum_probs=27.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHH
Q 011223 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHD 307 (490)
Q Consensus 251 e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd 307 (490)
+.+.+.....+.++..++.++..++..+..|+..++.++.....+-..+..+...+.
T Consensus 223 ~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 223 DELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444445555555555555555555565555444444444444444433
No 117
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=36.13 E-value=1.7e+02 Score=31.06 Aligned_cols=97 Identities=18% Similarity=0.314 Sum_probs=58.5
Q ss_pred hHHHHHhhhhcce-eeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 011223 212 NDVREQMEQRNFE-IAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES 290 (490)
Q Consensus 212 n~aReQmeqrny~-IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~ 290 (490)
=++=+.+-||+|+ ||=+.+.|+|.+.++|- -..+++.+-.-.+ |.++-++-. +|++.+..| +.-+-
T Consensus 59 Le~v~~rYqR~y~ema~~L~~LeavLqRir~----G~~LVekM~~YAS--DQEVLdMh~---FlreAL~rL----rqeeP 125 (324)
T PF12126_consen 59 LEAVEARYQRDYEEMAGQLGRLEAVLQRIRT----GGALVEKMKLYAS--DQEVLDMHG---FLREALERL----RQEEP 125 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh----HHHHHHHHHHhcc--hHHHHHHHH---HHHHHHHHh----hhhcC
Confidence 3555677899994 89999999999977663 2334444422221 444444444 455544443 22233
Q ss_pred hchhHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223 291 HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 291 qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~ 321 (490)
++.--.=....+.-.+-+|-+++-|+-.+..
T Consensus 126 q~lqa~V~td~F~E~k~rLQ~L~scItq~td 156 (324)
T PF12126_consen 126 QNLQAAVRTDGFDEFKARLQDLVSCITQGTD 156 (324)
T ss_pred cccccceecccHHHHHHHHHHHHHHHhcCcc
Confidence 3333333456777888889999999876653
No 118
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.93 E-value=1.8e+02 Score=33.44 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHH
Q 011223 270 QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHD 307 (490)
Q Consensus 270 E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd 307 (490)
|+..+..+|..|+-+|.+-......|-.-|..+.+|+.
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777777888888887766777777777777776655
No 119
>PRK10698 phage shock protein PspA; Provisional
Probab=35.62 E-value=4.4e+02 Score=25.86 Aligned_cols=87 Identities=14% Similarity=0.186 Sum_probs=48.9
Q ss_pred hhhHHhhhhchHHHhhhhh-hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHH
Q 011223 230 SELEATISGLREEVAKKSS-FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQ 308 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss-~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~ 308 (490)
.+-+.++..=++++|+.+= .-......+..-+..+......+..|+..+..++.++..++.++..|.-.......- ..
T Consensus 73 ~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~-~~ 151 (222)
T PRK10698 73 EKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS-RD 151 (222)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3445566666777776521 111112222333444444444666778888888888888888888887666655443 33
Q ss_pred HHHHHHHhc
Q 011223 309 VDDIIKIVD 317 (490)
Q Consensus 309 L~~vi~~vd 317 (490)
+...+..++
T Consensus 152 ~~~~~~~~~ 160 (222)
T PRK10698 152 VRRQLDSGK 160 (222)
T ss_pred HHHHHhCCC
Confidence 344444333
No 120
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.56 E-value=1.6e+02 Score=24.44 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=20.6
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 232 LEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
+|+-|..|-.-+|----.++.|.+-+..-...|..+.+++..|.+++.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344433333333333334444444444444444444444444444433
No 121
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=35.42 E-value=2.4e+02 Score=29.17 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=45.6
Q ss_pred hHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011223 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESH 291 (490)
Q Consensus 212 n~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~q 291 (490)
|+-|.||-++ |.|+|+-.++.++.+ +.+--.-+++..-..+.+++++ .+|+...-+..+++.++..
T Consensus 166 ~d~rnq~l~~------~i~~l~~~l~~~~~~-~~~~~~~~~~~~~~~e~~~r~~-------~lr~~~~~l~~el~~aK~~ 231 (264)
T PF07246_consen 166 NDRRNQILSH------EISNLTNELSNLRND-IDKFQEREDEKILHEELEARES-------GLRNESKWLEHELSDAKED 231 (264)
T ss_pred hhhHHHHHHH------HHHHhhhhHHHhhch-hhhhhhhhhHHHHHHHHHHhHh-------hhHHHHHHHHHHHHHHHHH
Confidence 4778888875 468889999888887 3333333444333434344443 5666666666777666644
Q ss_pred chhHHHHhhhH
Q 011223 292 RPLLVDQLNYV 302 (490)
Q Consensus 292 r~lL~dql~sv 302 (490)
...|-..++..
T Consensus 232 ~~~~~~~~~~~ 242 (264)
T PF07246_consen 232 MIRLRNDISDF 242 (264)
T ss_pred HHHHHhcccch
Confidence 44444444333
No 122
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.27 E-value=2.2e+02 Score=23.38 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=32.7
Q ss_pred hhhHHhhh---hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 011223 230 SELEATIS---GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (490)
Q Consensus 230 SqLEAsis---~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~ 281 (490)
|.|+|-|- .+.+|+-+=-+-.-.+++.+.+-+.+..+|+.++..|++.++++
T Consensus 4 saL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 4 SALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555441 34455544444445566667777888888888888888777764
No 123
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.09 E-value=1.9e+02 Score=25.25 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=18.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHH
Q 011223 264 VAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQ 298 (490)
Q Consensus 264 i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dq 298 (490)
+..|+-++.+++-.+..+.+.++-+..+-.+|+++
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555666553
No 124
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.73 E-value=2.3e+02 Score=23.61 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 261 DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
-+++.+++..+..++.+++.++.++.+|+
T Consensus 39 r~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 39 RAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777777765544
No 125
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=34.36 E-value=24 Score=39.33 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=0.0
Q ss_pred hcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHh
Q 011223 221 RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES-------QGLELRQLVNEYEDKL 285 (490)
Q Consensus 221 rny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~-------E~~~lKe~V~e~E~kl 285 (490)
++..+-.++.+|+..|..|..+.+.--..++++..++..-...+..|++ |+..||..+..||...
T Consensus 358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3445566666666666666666655555566665555555555555555 6666666666666554
No 126
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=34.20 E-value=38 Score=28.03 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 268 ESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 268 e~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
-+||+.||++|.+|+.+...|+..+.+|-.
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348889999999999999888887777654
No 127
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=34.19 E-value=5.8e+02 Score=26.86 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=13.3
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHH
Q 011223 96 DKLSTEIAEVNIAKDEVVKQLDEV 119 (490)
Q Consensus 96 ~~~s~~l~~v~~~~de~~kq~~~~ 119 (490)
+-+..++.++...-++...+|.+.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554
No 128
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.13 E-value=3.5e+02 Score=27.24 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=24.4
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhh--hhhhhhHHHHHh
Q 011223 181 GLPAVVYGVIKRTNEIVEELVGQIDA--TAKSRNDVREQM 218 (490)
Q Consensus 181 GL~Aiaygv~KRtneiveell~Qida--~~ksrn~aReQm 218 (490)
|..-.-+=||-|+--++.+++.-.+. +-|....++.|.
T Consensus 104 Gf~LFL~lvI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~ 143 (216)
T KOG1962|consen 104 GFVLFLSLVIRRLHTLLRELATLRANEKAMKENEALKKQL 143 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55555555789999999999877763 333344444443
No 129
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.60 E-value=4.3e+02 Score=25.20 Aligned_cols=60 Identities=18% Similarity=0.379 Sum_probs=31.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhcc--------cCC--CCCCCCC--CCCCCcccCCch----hHHHHhhhchhHHHHH
Q 011223 140 LRSEIENSAHMLVTGIEKISGK--------VSN--FKNFSAG--GLPRSQKYTGLP----AVVYGVIKRTNEIVEE 199 (490)
Q Consensus 140 l~~Ei~~s~~mL~sg~Ekis~k--------~s~--~k~f~~~--~lP~SqKYtGL~----Aiaygv~KRtneivee 199 (490)
+...+......|+.-+-.|-.- -++ ...|+-+ +||.+..+.+.| +.|+|.+-..=-++--
T Consensus 138 l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~~~~~~~~~I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~ 213 (302)
T PF10186_consen 138 LQSQLARRRRQLIQELSEIFPIEQVSSPRRPSDSSSSEYTICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSR 213 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecccccCCCCCCCCeeecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666655544333322 122 3445444 477887777764 4667766544444333
No 130
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=33.51 E-value=3e+02 Score=31.40 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=63.4
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHH
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQ 308 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~ 308 (490)
=.+|++.|.+||-++..--+.++.+++.++..|..+.-+-.++.+.+.+--=|+++-+-.+.....|.+-+.-+.---+.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999998887777777777766555555555566666666655554444444
Q ss_pred HHHHHH
Q 011223 309 VDDIIK 314 (490)
Q Consensus 309 L~~vi~ 314 (490)
+.++=+
T Consensus 161 ~q~~~R 166 (632)
T PF14817_consen 161 LQDIQR 166 (632)
T ss_pred HHHHHh
Confidence 444433
No 131
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=33.17 E-value=2.1e+02 Score=26.10 Aligned_cols=74 Identities=24% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhc
Q 011223 45 AREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124 (490)
Q Consensus 45 ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~ 124 (490)
.|.+++.|.++++..+.=|-.-....=--++++..|||+ |+ -.+..|-.+-..+++...+++.+++++.+..+
T Consensus 3 e~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~-L~------~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 3 EKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQ-LR------NALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777643322222222222235555555555 22 23444556666777777788888888777755
Q ss_pred C
Q 011223 125 G 125 (490)
Q Consensus 125 ~ 125 (490)
+
T Consensus 76 ~ 76 (107)
T PF09304_consen 76 D 76 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 132
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=32.81 E-value=76 Score=36.20 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=43.5
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe 276 (490)
|++||-++++...|+..+-++++.|.++++..+..|+.|..|+..++-
T Consensus 26 v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 26 VPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 789999999999999999999999999999999999999887766654
No 133
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.42 E-value=3.9e+02 Score=26.42 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhHHH
Q 011223 341 NIRASLAGMESIYQ 354 (490)
Q Consensus 341 ~lK~sL~g~ksI~e 354 (490)
.++.+..|+++|+.
T Consensus 91 ~~~~i~~Gvemi~k 104 (208)
T PRK14155 91 AVKNFIIGVEMTEK 104 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 46777888888886
No 134
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.03 E-value=4.1e+02 Score=25.50 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhh---------hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccC
Q 011223 261 DEKVAEIESQGLELRQLVNEYEDKLKNLE---------SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLF 331 (490)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~lE---------~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f 331 (490)
+.+|.+++.++.+++++.-.+-+...|+. .+.--+..-+..+-.|.|.|...+.....+..
T Consensus 26 ~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~---------- 95 (176)
T PRK14151 26 TARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDE---------- 95 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccch----------
Q ss_pred CCcccchhHHHHHHHhhhhhHHHHHHHHHHHhH
Q 011223 332 LPQETDMEENIRASLAGMESIYQLTRIVVEKTR 364 (490)
Q Consensus 332 ~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~ 364 (490)
.++.++.|+++|+..-..+..|.+
T Consensus 96 ---------~~~~~~~Gv~mi~k~l~~~L~k~G 119 (176)
T PRK14151 96 ---------AIKPMREGVELTLKMFQDTLKRYQ 119 (176)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHCC
No 135
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=31.98 E-value=3.7e+02 Score=23.99 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=52.9
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHh
Q 011223 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEK 260 (490)
Q Consensus 181 GL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~ek 260 (490)
||-|.++.- ...++++++||+.=..+. ++++..++.---.+- .+++..+...++.. ...|++|++-+.++
T Consensus 13 GLGa~a~~~-ek~~k~~~~LVkkGe~~~---ee~k~~~~e~~~~~~---e~~~~~~~~~~~~~---~~~~~~le~~~~~~ 82 (118)
T TIGR01837 13 GIGALARVQ-EEGSKFFNRLVKEGELAE---KRGQKRFDESVDAAR---EEVKTALEQTRDQV---QRNWDKLEKAFDER 82 (118)
T ss_pred HHhHHHHHH-HHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHH---HHHhhhHHHHHHHH---HhhHHHHHHHHHHH
Confidence 666666653 678999999998755443 455554432110000 22222222222221 23456665555443
Q ss_pred HHHHH-HH----HHhHHHHHHHHHHHHHHhhhhh
Q 011223 261 DEKVA-EI----ESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 261 e~~i~-el----e~E~~~lKe~V~e~E~kl~~lE 289 (490)
=..+. .| .+++..|+.+|+.|+.++..|.
T Consensus 83 v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 83 VEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221 11 1288999999999999886654
No 136
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=31.71 E-value=1.3e+03 Score=30.12 Aligned_cols=179 Identities=23% Similarity=0.296 Sum_probs=99.0
Q ss_pred HHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh---
Q 011223 213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE--- 289 (490)
Q Consensus 213 ~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE--- 289 (490)
..-.||++.+. |+-++.-.++...++|-.++.++..=-..+.---..++++.++..++.+.|..++..+..|.
T Consensus 395 ~~qqqle~~~l----ele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~ 470 (1822)
T KOG4674|consen 395 KLQQQLESLKL----ELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQL 470 (1822)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555553 33455555555555555555555544333333344455555555555555555555444444
Q ss_pred -----------hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHH-
Q 011223 290 -----------SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTR- 357 (490)
Q Consensus 290 -----------~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAk- 357 (490)
.+..-|.+|+.++..=-+.+..+..++.+.-. ...++|.+..|-.=|..+++|-+|.-
T Consensus 471 ~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~----------~~~es~S~~iIse~Lv~F~nI~eLqek 540 (1822)
T KOG4674|consen 471 NDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDS----------TENESDSEEIISERLVEFSNINELQEK 540 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccc----------cccCccHHHHHHHHHHHhccHHHHHHH
Confidence 33333333333333323333333333222211 34678899999888999999988742
Q ss_pred --HHHHHhHHHHHhhHH---------------HHhhHHHHHHHHHHhhhhHHHHHHHHhhhhccc
Q 011223 358 --IVVEKTRDLVQKKSR---------------EVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSV 405 (490)
Q Consensus 358 --eV~~Kv~~~~E~kkk---------------E~keLE~sV~~L~kEneDI~sLLRsALsEKea~ 405 (490)
+....|+.+-+..+. .+..+...|..|.++..+.+..+.+-+++|.-.
T Consensus 541 N~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y 605 (1822)
T KOG4674|consen 541 NVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMY 605 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333332222 233667789999999999999999999977653
No 137
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.71 E-value=8.2e+02 Score=27.85 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhh
Q 011223 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA 108 (490)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~ 108 (490)
+.++-+...|.+.=.++....+.....++....+|++--...-++=+.+..+-. +....++.++.+...+..+
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k-------el~~~~e~l~~E~~~L~~q 214 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK-------ELTESSEELKEERESLKEQ 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 444455555555556677778888888888888886654443333333332221 2223344455555555554
Q ss_pred HHHHHH
Q 011223 109 KDEVVK 114 (490)
Q Consensus 109 ~de~~k 114 (490)
..+...
T Consensus 215 ~~e~~~ 220 (546)
T PF07888_consen 215 LAEARQ 220 (546)
T ss_pred HHHHHH
Confidence 444433
No 138
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=31.55 E-value=8.8e+02 Score=28.16 Aligned_cols=198 Identities=19% Similarity=0.192 Sum_probs=0.0
Q ss_pred hcceeeeeehhhHHhhhhch--HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHH--
Q 011223 221 RNFEIAIEVSELEATISGLR--EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLV-- 296 (490)
Q Consensus 221 rny~IAIEVSqLEAsis~lr--~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~-- 296 (490)
++.++||+--|.+..+-... +|++-|.+++.-++..+..-..+|-.+|+|++.|+..... --+-.-+.
T Consensus 206 ~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~--------~N~~~~~~~~ 277 (629)
T KOG0963|consen 206 SSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK--------ANSSKKLAKI 277 (629)
T ss_pred HHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhhhhccC
Q ss_pred HHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhh
Q 011223 297 DQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKS 376 (490)
Q Consensus 297 dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~ke 376 (490)
+-++.+..+-++..++|..+..+=- .++.++....--|- .-...+..-...+..++..
T Consensus 278 ~~i~~~~~~L~~kd~~i~~L~~di~-------------------~~~~S~~~e~e~~~---~qI~~le~~l~~~~~~lee 335 (629)
T KOG0963|consen 278 DDIDALGSVLNQKDSEIAQLSNDIE-------------------RLEASLVEEREKHK---AQISALEKELKAKISELEE 335 (629)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHHHhhhhhhccccchhcccCCCCCCCCccccCCccchhHH
Q 011223 377 LNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDE 456 (490)
Q Consensus 377 LE~sV~~L~kEneDI~sLLRsALsEKea~E~eqkrseLLQiAE~GLrevGfgF~~~~i~Gdg~~e~S~d~~~~~seeedE 456 (490)
|.+.+..- .-=++|-.=|++-=. ++=|..+...+.. +.
T Consensus 336 l~~kL~~~-sDYeeIK~ELsiLk~----------------------------------ief~~se~a~~~~-------~~ 373 (629)
T KOG0963|consen 336 LKEKLNSR-SDYEEIKKELSILKA----------------------------------IEFGDSEEANDED-------ET 373 (629)
T ss_pred HHHHHhhh-ccHHHHHHHHHHHHH----------------------------------hhcCCcccccccc-------cc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011223 457 IYNLAGALENIVKASQLEIVELRHSVEELRVEFT 490 (490)
Q Consensus 457 VySLAsalEniMK~sqlEI~eLrhslEEsRsE~~ 490 (490)
+-+|=|-|=.-=+.+|.|...||-.....-.+|+
T Consensus 374 ~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~ 407 (629)
T KOG0963|consen 374 AKTLESLLLEKNRKLQNENASLRVANSGLSGRIT 407 (629)
T ss_pred cchHHHHHHHHHhhhhHHHHHHhccccccchhHH
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.51 E-value=1.9e+02 Score=28.35 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=13.7
Q ss_pred hhHHHHHHHHhhhhhhhhhhHHHHH
Q 011223 193 TNEIVEELVGQIDATAKSRNDVREQ 217 (490)
Q Consensus 193 tneiveell~Qida~~ksrn~aReQ 217 (490)
+.+.+..|=+|+......-++++.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566666666655555554444
No 140
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=31.27 E-value=7.8e+02 Score=27.50 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=25.9
Q ss_pred HhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHH
Q 011223 50 ENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE 87 (490)
Q Consensus 50 e~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ 87 (490)
+..+.+++..=.++...-+++-++.++...+|+.+-..
T Consensus 216 q~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~k 253 (489)
T PF05262_consen 216 QEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQK 253 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44556666666667777777777888888887776433
No 141
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=31.23 E-value=1.7e+02 Score=31.06 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=36.7
Q ss_pred hhhHHHHHhhhhcceeee-eehhhHHhhhhchHHHhhhhhhHHHHHHHHHH--hHH-HHHHHHHhHHHHHHHHHHHHHHh
Q 011223 210 SRNDVREQMEQRNFEIAI-EVSELEATISGLREEVAKKSSFIENLEKSLIE--KDE-KVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 210 srn~aReQmeqrny~IAI-EVSqLEAsis~lr~eva~kss~~e~l~ks~~e--ke~-~i~ele~E~~~lKe~V~e~E~kl 285 (490)
..+..++.+..|||..-| +|.+|......+..++..--+..-.++|.+.. +.+ ...++-.++..+++.+.+++.++
T Consensus 10 n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 89 (425)
T PRK05431 10 NPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAEL 89 (425)
T ss_pred CHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777788764211 12222222222222222222222222333322 111 23344456666777777776666
Q ss_pred hhhhhh
Q 011223 286 KNLESH 291 (490)
Q Consensus 286 ~~lE~q 291 (490)
+.++++
T Consensus 90 ~~~~~~ 95 (425)
T PRK05431 90 DELEAE 95 (425)
T ss_pred HHHHHH
Confidence 655543
No 142
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.17 E-value=4.7e+02 Score=26.22 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=47.1
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHH
Q 011223 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIES-------QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDD 311 (490)
Q Consensus 239 lr~eva~kss~~e~l~ks~~eke~~i~ele~-------E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~ 311 (490)
++.++-.-...+++-++.+.+-...+..|.. |+-...+-+..+|.-++.+++.|.-..+.+.-++-.+..|.+
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~ 95 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKD 95 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555677777777776666666554 334445567889999999987777776666544444444443
Q ss_pred HHHH
Q 011223 312 IIKI 315 (490)
Q Consensus 312 vi~~ 315 (490)
-|+.
T Consensus 96 ~in~ 99 (230)
T PF10146_consen 96 EINE 99 (230)
T ss_pred HHHH
Confidence 3333
No 143
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.99 E-value=1.1e+03 Score=28.93 Aligned_cols=247 Identities=19% Similarity=0.252 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc-c---hhhHH
Q 011223 30 ERFREVLAELNRERQAREAAENSAT----ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSN-D---KLSTE 101 (490)
Q Consensus 30 ~~~~~l~ael~~er~ar~aae~s~~----e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~-~---~~s~~ 101 (490)
-++..+.-|+..=..++.+++.-+- |++..-.||--+.++.--||||.-+-=+ +|+.|-+.|-.. . .+..+
T Consensus 113 n~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~-~L~nk~~~lt~~~~q~~tkl~e 191 (1265)
T KOG0976|consen 113 NKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE-DLHDKNEELNEFNMEFQTKLAE 191 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH-HHhhhhhHHhHHHHHHHHHHHH
Confidence 3344444444444445666665444 4455555666666666667777665544 477766655432 2 23345
Q ss_pred HHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCC
Q 011223 102 IAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG 181 (490)
Q Consensus 102 l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtG 181 (490)
....|++-.+..+||++.+..-|. ++++ .++ .+-+..+|-.--.-|.+-++-++.
T Consensus 192 ~~~en~~le~k~~k~~e~~~~nD~-~sle--~~~-~q~~tq~vl~ev~QLss~~q~ltp--------------------- 246 (1265)
T KOG0976|consen 192 ANREKKALEEKLEKFKEDLIEKDQ-KSLE--LHK-DQENTQKVLKEVMQLSSQKQTLTP--------------------- 246 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchH-HHHH--HHH-HHHHHHHHHHHHHHHHHhHhhhhh---------------------
Confidence 557788889999999998887443 2221 111 122333332222223322222211
Q ss_pred chhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHH--
Q 011223 182 LPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIE-- 259 (490)
Q Consensus 182 L~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~e-- 259 (490)
++-|--.++|..--..+.+|-=-+--.|.+-.|--..=|.||-|--+--+.+++- .|.++.+.
T Consensus 247 --------~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd-------~lkqt~t~a~ 311 (1265)
T KOG0976|consen 247 --------LRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELD-------TLKQTRTRAD 311 (1265)
T ss_pred --------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHhh
Confidence 1112222333333334444443444444444555555566666666544444432 22222211
Q ss_pred ----------------hHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhc
Q 011223 260 ----------------KDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (490)
Q Consensus 260 ----------------ke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vd 317 (490)
--..++.|.-.+.+-|-+++.+++|+.+||-+|.++....-++...++-....++.+-
T Consensus 312 gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~ 385 (1265)
T KOG0976|consen 312 GDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLL 385 (1265)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1334455555777777888888899988998888877766666666655555555544
No 144
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.66 E-value=4.4e+02 Score=24.40 Aligned_cols=41 Identities=24% Similarity=0.388 Sum_probs=24.2
Q ss_pred hhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 235 sis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
|=.+|.+-++.=+...+.+.. .|+...+ .|-+||+.++.++
T Consensus 37 Trr~m~~A~~~v~kql~~vs~-------~l~~tKk---hLsqRId~vd~kl 77 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSE-------SLSSTKK---HLSQRIDRVDDKL 77 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHhhH
Confidence 334444444554555555544 4444555 5668899999988
No 145
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=30.23 E-value=5.3e+02 Score=29.11 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=22.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 011223 261 DEKVAEIESQGLELRQLVNEYEDKLKN 287 (490)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~ 287 (490)
..++..|++|...|++.+..|+.+|..
T Consensus 509 ~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 509 QKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888888999999999999988864
No 146
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=30.18 E-value=7.8e+02 Score=27.13 Aligned_cols=206 Identities=15% Similarity=0.255 Sum_probs=113.0
Q ss_pred hHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-------cccCCCCCCCCC
Q 011223 99 STEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKIS-------GKVSNFKNFSAG 171 (490)
Q Consensus 99 s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis-------~k~s~~k~f~~~ 171 (490)
...|..+-.+-+.+...|++++......|...+..-.--..++..+-+-+|.+-..++.|- ..++.|...
T Consensus 111 ~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l--- 187 (569)
T PRK04778 111 ESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVEL--- 187 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHH---
Confidence 3344555555566666666666666666666666655556666666666666555555444 444444443
Q ss_pred CCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhh----hhh----------hhHHHHHhhhhcceeeeeehhhHHhhh
Q 011223 172 GLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDAT----AKS----------RNDVREQMEQRNFEIAIEVSELEATIS 237 (490)
Q Consensus 172 ~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~----~ks----------rn~aReQmeqrny~IAIEVSqLEAsis 237 (490)
..+|=+.=|..++...++=+..|=..++.- .+- =...=.+|...||-+. --.++..|.
T Consensus 188 ------~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~--~~~i~~~i~ 259 (569)
T PRK04778 188 ------TESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLD--HLDIEKEIQ 259 (569)
T ss_pred ------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC--CCChHHHHH
Confidence 345778889999888776554433322221 111 1233467888999753 335677777
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhc
Q 011223 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVD 317 (490)
Q Consensus 238 ~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vd 317 (490)
.+++.+..--..+.+| .+..-..++..++..+..|-+.++.--.--+..+...+-+-+.+.-+..--..|..=++.|.
T Consensus 260 ~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~ 337 (569)
T PRK04778 260 DLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337 (569)
T ss_pred HHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666665 24444555555555444444444332222222234444444444444444444444444443
No 147
>PRK04325 hypothetical protein; Provisional
Probab=30.09 E-value=2.3e+02 Score=23.66 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=16.6
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 244 AKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 244 a~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
|----.++.|.+-+..-...|..|.+.+..|.+++.+
T Consensus 19 AfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 19 AFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444433
No 148
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.93 E-value=2.9e+02 Score=22.06 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=47.3
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh-hhchhHHHHhhhHHhHHHHH
Q 011223 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQV 309 (490)
Q Consensus 240 r~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE-~qr~lL~dql~svs~Ihd~L 309 (490)
.+++-++...+-++.. .+|...|.+++..+.+..+.+..+|.+++++- ..|.-+...+..+..-.+.|
T Consensus 5 ~~~i~~~l~~~~~~~~--~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~l 73 (79)
T PF05008_consen 5 TAEIKSKLERIKNLSG--EQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKL 73 (79)
T ss_dssp HHHHHHHHHHGGGS-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554432 58888999999999999999999999998887 66666666666555544444
No 149
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.48 E-value=1.1e+02 Score=26.54 Aligned_cols=53 Identities=13% Similarity=0.357 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhchhH--HHHhhhHHhHH---HHHHHHHHHh
Q 011223 264 VAEIESQGLELRQLVNEYEDKLKNLESHRPLL--VDQLNYVSKIH---DQVDDIIKIV 316 (490)
Q Consensus 264 i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL--~dql~svs~Ih---d~L~~vi~~v 316 (490)
|.-+..+..--|+++.++..+++.|+.+..-+ .+.+..|+++| +.|..+++..
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~EIv~~VR~~~mtp~eL~~~L~~~ 60 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENLEIVQMVRSMKMTPEELAAFLRAM 60 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44455566677888888888888888655444 23556666665 5555566554
No 150
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=29.45 E-value=1.7e+02 Score=31.01 Aligned_cols=137 Identities=26% Similarity=0.254 Sum_probs=83.1
Q ss_pred CCCCCCCcccCCch-----------hHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHh-hh
Q 011223 170 AGGLPRSQKYTGLP-----------AVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEAT-IS 237 (490)
Q Consensus 170 ~~~lP~SqKYtGL~-----------Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAs-is 237 (490)
+-++|++.+|.-++ ....+-|+++-+.|..+=.+-++..|...-+++ +-.++|+--+||+-++-. +-
T Consensus 140 ~~~~~~~~~~~k~~~~~~~~~~~~~~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~-~i~~~~~e~~e~~~~~k~~~~ 218 (325)
T KOG2669|consen 140 AKKLPRGSKQIKLDEKGSKPGLSSLGEVHEKIDSSVELVRALQSLENAASKLDAVLEE-RIARLPQEVEEVSSLEKITLN 218 (325)
T ss_pred hhccccchHhhhhhhhccCCCCCCccccchhHHhHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHhhhH
Confidence 44566666554332 445566778999999999999999988887764 556889999999998864 66
Q ss_pred hchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----hHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHH
Q 011223 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIES----QGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVD 310 (490)
Q Consensus 238 ~lr~eva~kss~~e~l~ks~~eke~~i~ele~----E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~ 310 (490)
-+.+++++...+.+.+ +.+-..+++.... =+..+++...+-.+.+.+.+.+-+...+++.-+..+.+.+.
T Consensus 219 ~~~e~~~k~lee~~~l---L~e~~~~L~s~~~~~~~~~~~l~d~l~~q~~~l~~~~~~~~~~k~~l~~~~n~~~~~~ 292 (325)
T KOG2669|consen 219 SLIESLAKHLEEEEML---LREVNPRLAAEEESRRQLVSMLRDALREQKEELNDEEPQLEEYKEKLDKAQNVQKELN 292 (325)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcccchhhhhhHHHHHHHHhhhhccccccccCchhhhhhHHHHhhhhhhhc
Confidence 6677777777777766 5555555543333 12223333322223333333455555555554444433333
No 151
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=29.45 E-value=6.3e+02 Score=25.87 Aligned_cols=137 Identities=17% Similarity=0.261 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----------hHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Q 011223 27 FSVERFREVLAELNRERQAREAAENSATELSEKFNR-----------LKALAHESIKRRDESTRQRDEALREKEEILRSN 95 (490)
Q Consensus 27 ~~~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~r-----------lkala~ea~kkrde~~r~rd~a~r~ke~~~~~~ 95 (490)
..+.+++.++.+|++=+..|..-+..+-+.-...+= +..|-.+-| +.-
T Consensus 188 ~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~~DDI~~~ll~~~~~~~e~lf~~eL---------------------~k~ 246 (337)
T cd09234 188 AIEKELKRILNKVNEMRKQRRSLEQQLRDAIHEDDITSKLVTTTGGDMEDLFKEEL---------------------KKH 246 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHhcchhHHHHHHHHH---------------------HHh
Confidence 458899999999999999998877666332222111 223333333 335
Q ss_pred chhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCC
Q 011223 96 DKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPR 175 (490)
Q Consensus 96 ~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~ 175 (490)
+++.+.|.+-...-+.+.++|.++-..=-..|... .....+-+..-+.|..+..+-...+++..- +
T Consensus 247 ~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~-------~~~~~~Re~~l~~L~~ay~~y~el~~~l~e-------G 312 (337)
T cd09234 247 DQLVNLIEQNLAAQENILKALTEANAKYAPVRKAL-------SETKQKRESTISSLIASYEAYEDLLKKSQK-------G 312 (337)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------H
Confidence 55555555544444445554443322200001111 112333344444455544443333333211 1
Q ss_pred CcccCCchhHHHHhhhchhHHHH
Q 011223 176 SQKYTGLPAVVYGVIKRTNEIVE 198 (490)
Q Consensus 176 SqKYtGL~Aiaygv~KRtneive 198 (490)
..-|++|..++-+|.+++.+.|.
T Consensus 313 ~~FY~dL~~~v~~~~~~~~~f~~ 335 (337)
T cd09234 313 IDFYKKLEGNVSKLLQRIKSVCK 335 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 12388999888888888877664
No 152
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.41 E-value=5.7e+02 Score=25.62 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=40.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhch------------hHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223 265 AEIESQGLELRQLVNEYEDKLKNLESHRP------------LLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 265 ~ele~E~~~lKe~V~e~E~kl~~lE~qr~------------lL~dql~svs~Ihd~L~~vi~~vdd~k~ 321 (490)
-+++++...|++-|..|..+|+|+.+-+. .--+..+--++++....+|++.+..+-.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~~e~~p 187 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKLLEGLP 187 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34455777888888888888988883222 2234556677888888889888876643
No 153
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=29.27 E-value=9e+02 Score=27.59 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHH
Q 011223 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDI 312 (490)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~v 312 (490)
...-+.|+.-..+++.+|.++|+.+..+++......--+..+.+-+--+...+.--+.++++|.++
T Consensus 107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~El 172 (617)
T PF15070_consen 107 VENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAEL 172 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHH
Confidence 334456666678999999999998888888776555555455544444555566666666666655
No 154
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.95 E-value=4e+02 Score=30.80 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=28.2
Q ss_pred HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeee
Q 011223 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAI 227 (490)
Q Consensus 188 gv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAI 227 (490)
.||.|+.++..+.=.+++.....=++-|.++++..-++.-
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999998777777777777767777777665544433
No 155
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.39 E-value=1e+03 Score=27.83 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=97.3
Q ss_pred hhhhhHHHHHhhhhcceeeeee----hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 011223 208 AKSRNDVREQMEQRNFEIAIEV----SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYED 283 (490)
Q Consensus 208 ~ksrn~aReQmeqrny~IAIEV----SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~ 283 (490)
.++|.--|.++|.|-..|-+|+ +++--.+-++-++|-+=+.-|+++...++-.-..-..+=.+-+.+|+.-+.+|-
T Consensus 48 ~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 48 LRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred HHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3458888999999887777764 445555666677888888888888666655543333333333344444444444
Q ss_pred Hhhhhh--------------------hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhHHHH
Q 011223 284 KLKNLE--------------------SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIR 343 (490)
Q Consensus 284 kl~~lE--------------------~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK 343 (490)
+.+.+. .-....|..++-|..||+.-..++.+..-.
T Consensus 128 r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~FF~vL~rvqeIh~~~~~Ll~~~~~~------------------------ 183 (655)
T KOG3758|consen 128 RKKIINAFLDNFQLSSEELDLLTESGPIDEDFFKVLDRVQEIHDNCRLLLQTPNQT------------------------ 183 (655)
T ss_pred HHHHHHHHHHhcccChHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhccchh------------------------
Confidence 443332 111234555566666666655555544411
Q ss_pred HHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhh--HHHHHHHHHH-hhhhHHHHHHHHhhhhcccCCCCchhhHHHHH
Q 011223 344 ASLAGMESIYQLTRIVVEKTRDLVQKKSREVKS--LNEAVGQLVK-EKEHIVSLLRSALSKRMSVDPSSKTNELFKVA 418 (490)
Q Consensus 344 ~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~ke--LE~sV~~L~k-EneDI~sLLRsALsEKea~E~eqkrseLLQiA 418 (490)
-+-++-.|+..|.|.--.++.+ ..+....|+. ++.+++.+||-|+.. =+.++.||+-+
T Consensus 184 -----------Ag~eime~M~~~~E~a~erl~r~~qs~e~~~l~~t~~~E~~~il~kA~~~------L~~~p~lfk~~ 244 (655)
T KOG3758|consen 184 -----------AGLEIMEKMALIQEGAYERLFRWSQSSECRNLTGTDSQEVSPILRKAFVF------LSSRPVLFKYL 244 (655)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHHhhhHhhcCCccccchhhHHHHHHHHHH------HhcChHHHHHH
Confidence 1223344444455544444444 2224555664 889999999988762 25567777754
No 156
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.33 E-value=5.3e+02 Score=24.63 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=25.8
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc
Q 011223 97 KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISG 160 (490)
Q Consensus 97 ~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~ 160 (490)
.|..+...+++....+.++-.++... .+..+....++.....=...-+++|+|
T Consensus 93 ~L~~~~~~L~~~e~~l~~~~~~l~~~-----------~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 93 QLDRRLEQLEKREEELEKKEEELEQR-----------KEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444445555554444444333222 222444555665555555555666655
No 157
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.23 E-value=9.3e+02 Score=27.38 Aligned_cols=88 Identities=19% Similarity=0.334 Sum_probs=52.5
Q ss_pred HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 011223 188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (490)
Q Consensus 188 gv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~el 267 (490)
.+++|.-|||--+=+|-+--.|--.|-|+-=. .| .+....|.++.+.-|+.|=
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQk---------------ei----------N~l~gkL~RtF~v~dElif-- 540 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQK---------------EI----------NSLTGKLDRTFTVTDELIF-- 540 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------HH----------HHHHHHHHhHHHHHHHHHH--
Confidence 34689999999999998777777666664211 11 1122233333333332222
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223 268 ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 268 e~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~ 321 (490)
++++ +-+..-....++..||+--..+|.+|.+-..
T Consensus 541 ------------------rdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~ 575 (594)
T PF05667_consen 541 ------------------RDAK-KDEAARKAYKLLASLHENCSQLIETVEETGT 575 (594)
T ss_pred ------------------HHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 1111 3334445778899999999999999885544
No 158
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.94 E-value=9.6e+02 Score=27.46 Aligned_cols=189 Identities=20% Similarity=0.289 Sum_probs=93.9
Q ss_pred CCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhh---hchHHHhhhhhhHH
Q 011223 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS---GLREEVAKKSSFIE 251 (490)
Q Consensus 175 ~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis---~lr~eva~kss~~e 251 (490)
.+++|+|+ ++|-..=++..=.||.+-.--++.-+-|++... |- .+|.|--.+ .|-.++.+--+..+
T Consensus 324 K~~~~~g~-------l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~--Is--~e~fe~mn~Ere~L~reL~~i~~~~~ 392 (622)
T COG5185 324 KSQEWPGK-------LEKLKSEIELKEEEIKALQSNIDELHKQLRKQG--IS--TEQFELMNQEREKLTRELDKINIQSD 392 (622)
T ss_pred HHHhcchH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC--CC--HHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 67888864 566665566666777777777777777775443 22 233333221 12222222333334
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCcccccc-cccc
Q 011223 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGL-SESL 330 (490)
Q Consensus 252 ~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~L-sEs~ 330 (490)
.|.|++.+.+-.+ ...+.++|.+++.+.. |.+.++.+. -.++.+++.-.-.+ +|-+
T Consensus 393 ~L~k~V~~~~lea----------q~~~~slek~~~~~~s----l~~~i~~~~---------~~i~~~~nd~~l~iN~E~~ 449 (622)
T COG5185 393 KLTKSVKSRKLEA----------QGIFKSLEKTLRQYDS----LIQNITRSR---------SQIGHNVNDSSLKINIEQL 449 (622)
T ss_pred HHHHHHHhHHHHH----------HHHHHHHHHHHHHHHH----HHHHhcccH---------HHHhhcCCCCceeeccccC
Confidence 4444333332211 1223333333322111 112221111 11233333211111 2433
Q ss_pred CCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhh
Q 011223 331 FLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSK 401 (490)
Q Consensus 331 f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~sLLRsALsE 401 (490)
.|...|+.+.+|.+..+..+=.++--..+.+.+=-.|+ .++.++.-+..|+.+.+-|.+=|-.|+++
T Consensus 450 -~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee---~i~~~~~~i~El~~~l~~~e~~L~~a~s~ 516 (622)
T COG5185 450 -FPKGSGINESIKKSILELNDEIQERIKTEENKSITLEE---DIKNLKHDINELTQILEKLELELSEANSK 516 (622)
T ss_pred -CccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHH---HhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677999999988777665444332333333222222 34567777888888888888888888874
No 159
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.67 E-value=8.4e+02 Score=26.70 Aligned_cols=137 Identities=24% Similarity=0.312 Sum_probs=94.3
Q ss_pred hhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCCchhHHHHhhhchhH----------HHHHHHHhhhhhhhhhhHHHH
Q 011223 147 SAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNE----------IVEELVGQIDATAKSRNDVRE 216 (490)
Q Consensus 147 s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtne----------iveell~Qida~~ksrn~aRe 216 (490)
+-|+|-+-|.||+-+ -.||--||-.+=+|-.| ++.+|+.-.+.-.|..++
T Consensus 69 a~~llq~kirk~~e~-----------------~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~--- 128 (401)
T PF06785_consen 69 AGQLLQTKIRKITEK-----------------DEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGD--- 128 (401)
T ss_pred HHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcch---
Confidence 347788888888743 24888899888888665 455555555555555443
Q ss_pred HhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh-hhhhhchhH
Q 011223 217 QMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK-NLESHRPLL 295 (490)
Q Consensus 217 Qmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~-~lE~qr~lL 295 (490)
.-+||..|..+++|-..----.+++....-||+.+-..|-+|+.+..-...+|-++-. .+-+|+.+|
T Consensus 129 ------------~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml 196 (401)
T PF06785_consen 129 ------------IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSML 196 (401)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhh
Confidence 3579999999999999888889999999999999999999987777666555433321 123566555
Q ss_pred HH---Hhhh-HHhHHHHHHHHHHH
Q 011223 296 VD---QLNY-VSKIHDQVDDIIKI 315 (490)
Q Consensus 296 ~d---ql~s-vs~Ihd~L~~vi~~ 315 (490)
-. +|+- =++|.|-+++|--.
T Consensus 197 ~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 197 DKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 2333 45677755554433
No 160
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=27.42 E-value=1.7e+02 Score=29.45 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=12.9
Q ss_pred CCCCCCCCCCCCCCcccCCchhHHH
Q 011223 163 SNFKNFSAGGLPRSQKYTGLPAVVY 187 (490)
Q Consensus 163 s~~k~f~~~~lP~SqKYtGL~Aiay 187 (490)
++|.+|.+++-|.-++-.|..+|.+
T Consensus 99 s~~~~~~~~~~~~~~~~~~~~~v~~ 123 (214)
T PF07795_consen 99 SPFSNFNPLPQQQQQQVDPADAVLE 123 (214)
T ss_pred CcccccCccccccccccChHHHHHH
Confidence 3355664444444445556666643
No 161
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.41 E-value=1.6e+02 Score=27.05 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 260 KDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 260 ke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
-...|.+++.|...+..++..+....
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556666666666666666665543
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.29 E-value=5.4e+02 Score=24.90 Aligned_cols=84 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----------hHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES----------QGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~----------E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
||-++-...-..+..++.-+.+-..|..-+..-..++.+|.+ -+..+|.++..++.++++++-...+|..
T Consensus 35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~q 114 (201)
T PF13851_consen 35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQ 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHhHHHHHHH
Q 011223 298 QLNYVSKIHDQVDD 311 (490)
Q Consensus 298 ql~svs~Ihd~L~~ 311 (490)
.+..|..=.+.|+.
T Consensus 115 r~~kle~ErdeL~~ 128 (201)
T PF13851_consen 115 RFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHH
No 163
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.09 E-value=4e+02 Score=24.32 Aligned_cols=15 Identities=27% Similarity=0.725 Sum_probs=6.7
Q ss_pred HHHHHHHhhhhhHHH
Q 011223 340 ENIRASLAGMESIYQ 354 (490)
Q Consensus 340 e~lK~sL~g~ksI~e 354 (490)
+.|+.=+..++.+|.
T Consensus 99 eEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 99 EELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=26.60 E-value=9.4e+02 Score=27.12 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=45.4
Q ss_pred HhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHh
Q 011223 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (490)
Q Consensus 234 Asis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql 299 (490)
+-+.+.|.....+..++.+|+-.++.-++..--+|+-+-.+..++..+...++..++-+..|.+..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq 412 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ 412 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 466777888888888888776666655555555666666777777777777766666666666643
No 165
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.51 E-value=4.1e+02 Score=22.76 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHH
Q 011223 43 RQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE 118 (490)
Q Consensus 43 r~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~ 118 (490)
.............++.++.++..|..+.=.+|..+-+..+...+.+.+.-..-.+|..+|..+...+..+..++..
T Consensus 31 ~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 31 KQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 166
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.28 E-value=2.5e+02 Score=22.84 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 249 ~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
.++.|..-+..-...|..|++.+..|.+++..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 167
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.23 E-value=5.3e+02 Score=26.19 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred hhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchH---------HHhhhhhhHHHH
Q 011223 183 PAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLRE---------EVAKKSSFIENL 253 (490)
Q Consensus 183 ~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~---------eva~kss~~e~l 253 (490)
|..|.-+....=+-++..+.++ ..+.+.+++.-++++==+.--++.+.|..+...|. ....-...+..|
T Consensus 142 P~~A~~ian~l~~~~~~~i~~~--~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L 219 (362)
T TIGR01010 142 AEEAQKINQRLLKEGERLINRL--NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTL 219 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHhhhhhhh
Q 011223 254 EKSLIEKDEKVAEIES-------QGLELRQLVNEYEDKLKNLESH 291 (490)
Q Consensus 254 ~ks~~eke~~i~ele~-------E~~~lKe~V~e~E~kl~~lE~q 291 (490)
+..+.+.+.+++++.. .|-.++.++..++..+.....+
T Consensus 220 ~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~ 264 (362)
T TIGR01010 220 EGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQ 264 (362)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHH
No 168
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=26.16 E-value=77 Score=25.22 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhhhhhchhHHHH
Q 011223 273 ELRQLVNEYEDKLKNLESHRPLLVDQ 298 (490)
Q Consensus 273 ~lKe~V~e~E~kl~~lE~qr~lL~dq 298 (490)
.+-++|+.++..+..|+.+|..|++|
T Consensus 16 ~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777778888888876
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.10 E-value=3.9e+02 Score=27.49 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=13.0
Q ss_pred hhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCC
Q 011223 285 LKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDG 319 (490)
Q Consensus 285 l~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~ 319 (490)
...++.|-....+++..++++ +.+-+++.|=.++
T Consensus 115 ~~sl~~q~~~~~~~L~~L~kt-Nv~n~~F~I~hdG 148 (314)
T PF04111_consen 115 RDSLKNQYEYASNQLDRLRKT-NVYNDTFHIWHDG 148 (314)
T ss_dssp HHHHHHHHHHHHHHHHCHHT---TTTTT--EEEET
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CchhceeeEeecC
Confidence 333334444444444444443 2333444444444
No 170
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.10 E-value=1.8e+02 Score=24.50 Aligned_cols=55 Identities=20% Similarity=0.468 Sum_probs=41.3
Q ss_pred eeehhhHHhhhhchHHHhhhhhhHHH---HHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 011223 227 IEVSELEATISGLREEVAKKSSFIEN---LEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (490)
Q Consensus 227 IEVSqLEAsis~lr~eva~kss~~e~---l~ks~~eke~~i~ele~E~~~lKe~V~e~ 281 (490)
++.-.++.+++.||--+.+=-+.+.+ +.+++.+.+.+|..++.++...++.+..|
T Consensus 21 ~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 21 LSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888877776666666 77888888888887777777666666665
No 171
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.01 E-value=1.2e+03 Score=27.95 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 011223 197 VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQ 276 (490)
Q Consensus 197 veell~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe 276 (490)
|-.|=+-.-|++|-|+-+|-+|. .||+|+|.+--- ++ |++|+.-|+.|-.|++.|-.
T Consensus 411 va~lEkKvqa~~kERDalr~e~k------------------slk~ela~~l~~--De---LaEkdE~I~~lm~EGEkLSK 467 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDALRREQK------------------SLKKELAAALLK--DE---LAEKDEIINQLMAEGEKLSK 467 (961)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH------------------HHHHHHHHhhhh--HH---HHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHHHhhhhh---hhchhHHHHhh-hHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhH
Q 011223 277 LVNEYEDKLKNLE---SHRPLLVDQLN-YVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESI 352 (490)
Q Consensus 277 ~V~e~E~kl~~lE---~qr~lL~dql~-svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI 352 (490)
..---..-+|.|. .-..-|..-.+ .++.+...+-.+-.++++... ++.-++.-...+.+-
T Consensus 468 ~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee----------------~Ek~~~E~I~k~~ae 531 (961)
T KOG4673|consen 468 KQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEE----------------TEKLLQETIEKHQAE 531 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHH----------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHH-HHHHhhhhcccCCCCchhhHHHHHHhhhhhhccccch
Q 011223 353 YQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSL-LRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKF 431 (490)
Q Consensus 353 ~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~sL-LRsALsEKea~E~eqkrseLLQiAE~GLrevGfgF~~ 431 (490)
..=.+.--...+..++........+..+...+-+ .| ++.+|-
T Consensus 532 ~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~------Dlqk~nrlk------------------------------- 574 (961)
T KOG4673|consen 532 LTRQKDYYSNSRALAAALEAQALAEQATNDEARS------DLQKENRLK------------------------------- 574 (961)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh------hHHHHhhhh-------------------------------
Q ss_pred hcccCCCCCCCCccccCCccchhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHh
Q 011223 432 SKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQL--------------EIVELRHSVEEL 485 (490)
Q Consensus 432 ~~i~Gdg~~e~S~d~~~~~seeedEVySLAsalEniMK~sql--------------EI~eLrhslEEs 485 (490)
-++-.++.-.|+..|+..=-.|+. ||-+|++-|.++
T Consensus 575 ------------------Qdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 575 ------------------QDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 172
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=26.00 E-value=5.1e+02 Score=23.62 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=30.6
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Q 011223 22 SSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHES 70 (490)
Q Consensus 22 ~~~~~~~~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea 70 (490)
||--.+=.+|=..+...++.=.+++..|+.-+.+.+....-.+.=|.+.
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~i 93 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666666767777777777777777777776655554444333
No 173
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=25.24 E-value=9.7e+02 Score=26.61 Aligned_cols=92 Identities=25% Similarity=0.298 Sum_probs=55.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhh
Q 011223 68 HESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENS 147 (490)
Q Consensus 68 ~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s 147 (490)
....+.+-||.||-.-||-||-- | .|.||-..|+|++--|. .+.+++++.-.
T Consensus 331 areaklqaec~rQ~qlaLEEKaa-L-------------rkerd~L~keLeekkre--------------leql~~q~~v~ 382 (442)
T PF06637_consen 331 AREAKLQAECARQTQLALEEKAA-L-------------RKERDSLAKELEEKKRE--------------LEQLKMQLAVK 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-H-------------HHHHHHHHHHHHHHHHH--------------HHHHHHHHHhh
Confidence 34458999999999999999943 3 35667777777764444 45577777766
Q ss_pred hhhhhhhhhhhhcccCCCCCC--CCCCCCCCcccCCchhHHHHhhhc
Q 011223 148 AHMLVTGIEKISGKVSNFKNF--SAGGLPRSQKYTGLPAVVYGVIKR 192 (490)
Q Consensus 148 ~~mL~sg~Ekis~k~s~~k~f--~~~~lP~SqKYtGL~Aiaygv~KR 192 (490)
.+-|-+-| -+|..|..+- ..||.|..+- +=||.---|=+|
T Consensus 383 ~saLdtCi---kaKsq~~~p~~r~~~p~pnp~p--idp~~leefkrr 424 (442)
T PF06637_consen 383 TSALDTCI---KAKSQPMTPGPRPVGPVPNPPP--IDPASLEEFKRR 424 (442)
T ss_pred hhHHHHHH---HhccCCCCCCCCCCCCCCCCCC--CChHHHHHHHHH
Confidence 66666654 3555554332 1244443321 445544444443
No 174
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.13 E-value=8.6e+02 Score=29.89 Aligned_cols=56 Identities=27% Similarity=0.410 Sum_probs=32.5
Q ss_pred hhHHhhhhchHHHhhhhhhHHH--HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 011223 231 ELEATISGLREEVAKKSSFIEN--LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (490)
Q Consensus 231 qLEAsis~lr~eva~kss~~e~--l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l 288 (490)
++-+.-++.+.|++.-+--+|- |.|.++ |++-.-|+-|++-++++|++++..|.=|
T Consensus 294 eaqe~ke~~k~emad~ad~iEmaTldKEmA--EERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 294 EAQEAKERYKEEMADTADAIEMATLDKEMA--EERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555554444432 333333 3444456669999999999998887333
No 175
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=25.11 E-value=8.3e+02 Score=25.77 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=26.8
Q ss_pred cCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHhhHHHHHHH
Q 011223 19 VQTSSDEDFSVERFREVLAELNRERQAREAAEN----------SATELSEKFNRLKALAHES 70 (490)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~ael~~er~ar~aae~----------s~~e~~~~f~rlkala~ea 70 (490)
..||..+.-=|+++.+|--+|..-.++-+-.+. -+.++..--+++.+||++|
T Consensus 127 ~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea 188 (294)
T COG1340 127 VLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA 188 (294)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666678887776666544332222111 1223333446666777665
No 176
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=24.94 E-value=3.8e+02 Score=31.40 Aligned_cols=107 Identities=27% Similarity=0.328 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhhhhhhH----HHHHhhhhcceeeeeeh--------hhHHhhhhchHHHhhhhhhHHHHHHHHHHhH
Q 011223 194 NEIVEELVGQIDATAKSRND----VREQMEQRNFEIAIEVS--------ELEATISGLREEVAKKSSFIENLEKSLIEKD 261 (490)
Q Consensus 194 neiveell~Qida~~ksrn~----aReQmeqrny~IAIEVS--------qLEAsis~lr~eva~kss~~e~l~ks~~eke 261 (490)
|-..++=+.+.|.|-|.==+ |||-=|||=.+.....| +||+-|..+...++.-.++.-.|.+++.+|+
T Consensus 40 ~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~ 119 (769)
T PF05911_consen 40 KLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKE 119 (769)
T ss_pred hHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred HHHHHHHH-------hHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 262 EKVAEIES-------QGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 262 ~~i~ele~-------E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
.-|.+|.+ ++..|..+++.+|-....|.-.=.+|.+.|.
T Consensus 120 ~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 120 KLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 177
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=24.77 E-value=7.4e+02 Score=25.06 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=63.8
Q ss_pred hchhHHHHHHHHhhhhhhhhhh---HHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHH
Q 011223 191 KRTNEIVEELVGQIDATAKSRN---DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEI 267 (490)
Q Consensus 191 KRtneiveell~Qida~~ksrn---~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~el 267 (490)
-|+.+=...+..+..-+.++-+ +++--|+.|+.+--=.+..+|+.++--+-=...--.-++..-+.|+.+++.+-..
T Consensus 21 e~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~ 100 (205)
T KOG1003|consen 21 DRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERA 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4566666777778888888887 4555568898877666667777765443211111224556666677777766655
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHH
Q 011223 268 ESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHD 307 (490)
Q Consensus 268 e~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd 307 (490)
++-++----.|.+++..++ ++--.+++++...+
T Consensus 101 eeraE~~Es~~~eLeEe~~-------~~~~nlk~l~~~ee 133 (205)
T KOG1003|consen 101 EERAEAAESQSEELEEDLR-------ILDSNLKSLSAKEE 133 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHhHHHHHHHHHH
Confidence 5544433344445444443 33444555554443
No 178
>PRK00295 hypothetical protein; Provisional
Probab=24.67 E-value=3.8e+02 Score=22.03 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
--.++.|.+-+..-...|..+.+++..|.+++..
T Consensus 18 E~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 18 DDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 179
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.10 E-value=2.7e+02 Score=26.04 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=12.9
Q ss_pred eehhhHHhhhhchHHHh
Q 011223 228 EVSELEATISGLREEVA 244 (490)
Q Consensus 228 EVSqLEAsis~lr~eva 244 (490)
...++.+.++.||-|+.
T Consensus 52 ~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 52 QEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45567888888888876
No 180
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.99 E-value=6.7e+02 Score=24.29 Aligned_cols=12 Identities=33% Similarity=0.493 Sum_probs=8.4
Q ss_pred HHHHhhhhhHHH
Q 011223 343 RASLAGMESIYQ 354 (490)
Q Consensus 343 K~sL~g~ksI~e 354 (490)
+.++.|++++++
T Consensus 114 ~~l~~Gvem~~~ 125 (193)
T COG0576 114 KALLEGVEMTLD 125 (193)
T ss_pred HHHHHHHHHHHH
Confidence 666777777776
No 181
>PRK10869 recombination and repair protein; Provisional
Probab=23.97 E-value=1e+03 Score=26.37 Aligned_cols=127 Identities=13% Similarity=0.209 Sum_probs=71.4
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH------hhhhhhhchhHHHHhhhHHhHHHHHH
Q 011223 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK------LKNLESHRPLLVDQLNYVSKIHDQVD 310 (490)
Q Consensus 237 s~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~k------l~~lE~qr~lL~dql~svs~Ihd~L~ 310 (490)
..++.+++..-..|.++.+.+.+......+..++.++|+-.+.+++.- -..|+.. .+.+....+|.+.+.
T Consensus 153 ~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e----~~~L~n~e~i~~~~~ 228 (553)
T PRK10869 153 TSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEE----YKRLANSGQLLTTSQ 228 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH----HHHHHHHHHHHHHHH
Confidence 357777788888888887777776666666666666666666555321 1111222 234556666777777
Q ss_pred HHHHHhcC-C--CccccccccccCC-CcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHH
Q 011223 311 DIIKIVDD-G--NLDQSGLSESLFL-PQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQ 368 (490)
Q Consensus 311 ~vi~~vdd-~--k~~~s~LsEs~f~-~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E 368 (490)
.+...+++ + .+ -+.|...... .+-.+.+..+...+..+.++|.....+...++.|.+
T Consensus 229 ~~~~~L~~~~~~~~-~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 289 (553)
T PRK10869 229 NALQLLADGEEVNI-LSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLD 289 (553)
T ss_pred HHHHHhcCCCcccH-HHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777755 2 11 0111111100 000123455566677777777777777777777666
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.95 E-value=4.6e+02 Score=25.78 Aligned_cols=56 Identities=11% Similarity=0.284 Sum_probs=23.4
Q ss_pred hhHHhhhhchHHHhhhhhhHHH----HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 011223 231 ELEATISGLREEVAKKSSFIEN----LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (490)
Q Consensus 231 qLEAsis~lr~eva~kss~~e~----l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~ 286 (490)
+||+-+..|+.+++.-...+.. +...+...+..+++|..+-..|++.+..+..++.
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333222 2222333444455555544444444444444443
No 183
>PF13514 AAA_27: AAA domain
Probab=23.92 E-value=1.3e+03 Score=27.55 Aligned_cols=109 Identities=23% Similarity=0.329 Sum_probs=52.4
Q ss_pred CCCCCCCcccCCchhHHHHhhhchhHHHHH------HHHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhh---hhch
Q 011223 170 AGGLPRSQKYTGLPAVVYGVIKRTNEIVEE------LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI---SGLR 240 (490)
Q Consensus 170 ~~~lP~SqKYtGL~Aiaygv~KRtneivee------ll~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsi---s~lr 240 (490)
+.|+|. +|+-.-+++.+-..+.+. .-..+++....+..++..+..-=..... ...|.+.+ ..++
T Consensus 593 ~~g~p~------~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~l~~~l~~a~~~~ 665 (1111)
T PF13514_consen 593 AAGLPL------SPAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGP-AEELAALLEEAEALL 665 (1111)
T ss_pred hcCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHH
Confidence 455774 466666666665555432 2233444455555556555544333333 22233222 2233
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 241 EEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 241 ~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
++........+.|+..+..-+..+.+.+.+...+.+.+.......
T Consensus 666 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 710 (1111)
T PF13514_consen 666 EEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEW 710 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555555555555555555554444443
No 184
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.72 E-value=6.9e+02 Score=24.35 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=43.7
Q ss_pred chhhHHHHHHhhhHHH----HHHHHHHHhhhhcCC-cchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccC-CCCCC
Q 011223 96 DKLSTEIAEVNIAKDE----VVKQLDEVTKARDGS-RSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVS-NFKNF 168 (490)
Q Consensus 96 ~~~s~~l~~v~~~~de----~~kq~~~~~~~~~~~-~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s-~~k~f 168 (490)
-++..+|....+.|-. -.++|-.+++...+. .+.+.-...+.+.+..|++..+.....=..+|..-|. |...|
T Consensus 18 ~~~~~el~~~~kERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~~la~~l~~~ve~~l~~~ 96 (228)
T cd07650 18 KLVNTELADWLQERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHGELAQRIETDVEEPLRDF 96 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666544 456788888765422 2233333467778888888876665555566666663 55554
No 185
>PRK14158 heat shock protein GrpE; Provisional
Probab=23.56 E-value=7.1e+02 Score=24.46 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=9.7
Q ss_pred HHHHHhhhhhHHHH
Q 011223 342 IRASLAGMESIYQL 355 (490)
Q Consensus 342 lK~sL~g~ksI~eL 355 (490)
+..++.|+++|+..
T Consensus 115 ~~~i~~Gv~mi~k~ 128 (194)
T PRK14158 115 MSAIIEGIRMTLSM 128 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 45567888887763
No 186
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=23.56 E-value=6.9e+02 Score=24.32 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 011223 27 FSVERFREVLAELNRERQAREAAENSATELSEKFNR 62 (490)
Q Consensus 27 ~~~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~r 62 (490)
-..+++..+-.+|.........||.....++-++.-
T Consensus 12 ~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~ 47 (237)
T PF00261_consen 12 EAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL 47 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888777766655543
No 187
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.24 E-value=3e+02 Score=26.34 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=41.6
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHh-HHHHHHHHHhHHHHHHHHHHHHHHhh
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEK-DEKVAEIESQGLELRQLVNEYEDKLK 286 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~ek-e~~i~ele~E~~~lKe~V~e~E~kl~ 286 (490)
+++|+..+..|...++.=...++.+++...+. .........|+.+||.....+...|+
T Consensus 129 i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 129 IEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688888888888888888888888777653 33334445588888888777766663
No 188
>PRK00736 hypothetical protein; Provisional
Probab=23.11 E-value=3.6e+02 Score=22.14 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223 250 IENLEKSLIEKDEKVAEIESQGLELRQLV 278 (490)
Q Consensus 250 ~e~l~ks~~eke~~i~ele~E~~~lKe~V 278 (490)
++.|.+-+..-...|..|.+++..|.+++
T Consensus 21 ie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 21 IEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343334444444444444333333333
No 189
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=23.09 E-value=6.7e+02 Score=23.97 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=30.1
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh
Q 011223 242 EVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (490)
Q Consensus 242 eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v 316 (490)
|+..+-..+..+++.+..++..+. +....|.++-..++.+-+.|..+...|-+.-.-+..++.....-+..+
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~---~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~i 143 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLD---RRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEI 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554433 222233333333333333333444444444444444444333333333
No 190
>PLN02320 seryl-tRNA synthetase
Probab=22.98 E-value=3.5e+02 Score=30.17 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=40.8
Q ss_pred hhhhHHHHHhhhhcceeeeeehhhH---HhhhhchHHHhhhhhhHHHHHHHHHHh--HHHHHHHHHhHHHHHHHHHHHHH
Q 011223 209 KSRNDVREQMEQRNFEIAIEVSELE---ATISGLREEVAKKSSFIENLEKSLIEK--DEKVAEIESQGLELRQLVNEYED 283 (490)
Q Consensus 209 ksrn~aReQmeqrny~IAIEVSqLE---Asis~lr~eva~kss~~e~l~ks~~ek--e~~i~ele~E~~~lKe~V~e~E~ 283 (490)
...+..++.+.-|||.+. |.+|- ...-.+..++..--+.--.+.|.+..+ .....++-.++..||+.+..+|.
T Consensus 74 ~n~~~v~~~l~~R~~~~~--vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~ 151 (502)
T PLN02320 74 DNKEAVAINIRNRNSNAN--LELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEE 151 (502)
T ss_pred hCHHHHHHHHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888987643 33322 221122222222222223333333321 12244555577777777777777
Q ss_pred Hhhhhhh
Q 011223 284 KLKNLES 290 (490)
Q Consensus 284 kl~~lE~ 290 (490)
.++.+++
T Consensus 152 ~~~~~~~ 158 (502)
T PLN02320 152 DLVKLTD 158 (502)
T ss_pred HHHHHHH
Confidence 7766654
No 191
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.52 E-value=5e+02 Score=24.23 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=35.5
Q ss_pred HHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHH---h-hhcchhhHHHHHHhhhHHHHHHHHHH
Q 011223 56 LSEKFNRLKALAHESIKRRDESTRQRDEALREKEEI---L-RSNDKLSTEIAEVNIAKDEVVKQLDE 118 (490)
Q Consensus 56 ~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~---~-~~~~~~s~~l~~v~~~~de~~kq~~~ 118 (490)
+-.-.+|+-.+..+.++.++.......++--..+.. . ..+++.++|+++..+.-+...+.++.
T Consensus 113 L~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 113 LSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999888888766555543222211 1 23455566666555444443333333
No 192
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=22.45 E-value=2.9e+02 Score=24.52 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=55.7
Q ss_pred HHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH----HH----HH-HhhhhcccCCCCchhhHH
Q 011223 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS----LL----RS-ALSKRMSVDPSSKTNELF 415 (490)
Q Consensus 345 sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~s----LL----Rs-ALsEKea~E~eqkrseLL 415 (490)
|..+|..++++=..+...+..|.+..+.++..+..-+..+..+...... .+ .+ .|-+|+. +.-+.+.
T Consensus 2 S~~~m~~Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~nPlnaF~LIrRl~----~dW~~~~ 77 (134)
T PF08336_consen 2 SVADMEKLLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLSNPLNAFSLIRRLH----QDWPKWE 77 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcHHHHHHHHHHHH----HhhhhHH
Confidence 5688999999999999999999999999999999999998888775543 22 22 3556666 4445566
Q ss_pred HHHHhh
Q 011223 416 KVAENG 421 (490)
Q Consensus 416 QiAE~G 421 (490)
+.++..
T Consensus 78 ~~~~~~ 83 (134)
T PF08336_consen 78 KLMEQP 83 (134)
T ss_pred HHHHHh
Confidence 666655
No 193
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.42 E-value=4.6e+02 Score=21.80 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=0.0
Q ss_pred hHHhhhhchHHH---hhhhhhHHHHHHHHH-HhHHHHHHHHH---hHHHHHHHHHHHHHHhhhhhhh
Q 011223 232 LEATISGLREEV---AKKSSFIENLEKSLI-EKDEKVAEIES---QGLELRQLVNEYEDKLKNLESH 291 (490)
Q Consensus 232 LEAsis~lr~ev---a~kss~~e~l~ks~~-eke~~i~ele~---E~~~lKe~V~e~E~kl~~lE~q 291 (490)
||+.|..||..+ -++.+..+...|.+. +++.-+..+.. +...||+.++.+..++.....|
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 194
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.28 E-value=2e+02 Score=30.27 Aligned_cols=41 Identities=32% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 240 r~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
|.|-..-..+++.|++---+-...+++++||+-+||+.|.+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 195
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.17 E-value=9.6e+02 Score=25.47 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=60.9
Q ss_pred HhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHH
Q 011223 217 QMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLV 296 (490)
Q Consensus 217 Qmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~ 296 (490)
|+++||- .|++-..+|+-|+.. .-|.++-+-++--..++.|+.+...++..++.+-.+++.||..+..|-
T Consensus 56 q~etrnr-------dl~t~nqrl~~E~e~---~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 56 QLETRNR-------DLETRNQRLTTEQER---NKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 6677775 466777777776653 346667777777888999999999999999999999999997776664
Q ss_pred H----HhhhHHhHHHHHHHHHH
Q 011223 297 D----QLNYVSKIHDQVDDIIK 314 (490)
Q Consensus 297 d----ql~svs~Ihd~L~~vi~ 314 (490)
. .+-++.-....|.-.|+
T Consensus 126 rakRati~sleDfeqrLnqAIE 147 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAIE 147 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHHH
Confidence 3 23344444444444443
No 196
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=22.05 E-value=3.5e+02 Score=25.74 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=38.4
Q ss_pred cccCCCCchh--hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhh
Q 011223 17 IDVQTSSDED--FSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRD 75 (490)
Q Consensus 17 ~~~~~~~~~~--~~~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrd 75 (490)
+..-.|+++- .-+.+++.+--++..-..+=.||+++++.++..++|.++-+--|.-+|-
T Consensus 62 ~~a~~P~~~~~~~wqlkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rk 122 (136)
T PF11570_consen 62 FFANNPPHEYGRGWQLKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRK 122 (136)
T ss_dssp CCTT-TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5566677665 3357778777778887888899999999999999999987766665553
No 197
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.82 E-value=4.4e+02 Score=22.70 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=8.5
Q ss_pred HhhhHHhHHHHHHHHHHHh
Q 011223 298 QLNYVSKIHDQVDDIIKIV 316 (490)
Q Consensus 298 ql~svs~Ihd~L~~vi~~v 316 (490)
++..+..+-..|+.....+
T Consensus 74 ~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 198
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=21.79 E-value=3e+02 Score=27.75 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=14.0
Q ss_pred HHHHHhhHHHHHHHHhhhhhhHHH
Q 011223 57 SEKFNRLKALAHESIKRRDESTRQ 80 (490)
Q Consensus 57 ~~~f~rlkala~ea~kkrde~~r~ 80 (490)
+....+|+.|-.-|++.|||...|
T Consensus 32 eeqi~~L~~Ll~~a~~ERDEAr~q 55 (214)
T PF07795_consen 32 EEQIAHLKDLLKKAYQERDEAREQ 55 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666664433
No 199
>PRK12705 hypothetical protein; Provisional
Probab=21.63 E-value=5.3e+02 Score=28.77 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=30.9
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHH
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLEL 274 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~l 274 (490)
|+.+.|..+..-.+.+.+|...+++.++.+..++.++...+.++..+
T Consensus 78 ~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 78 ELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666667777777777777777777777666644443
No 200
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.56 E-value=1.6e+03 Score=27.87 Aligned_cols=91 Identities=16% Similarity=0.227 Sum_probs=44.0
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh-------hhhh------hhchhH
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL-------KNLE------SHRPLL 295 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl-------~~lE------~qr~lL 295 (490)
+.+|+.+|.++....+.=...+-.++.+..+.-..+..++..+..+++...++-.+| -.+. +++..+
T Consensus 411 ~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~ 490 (1141)
T KOG0018|consen 411 IKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDASADRHEGSRRSRK 490 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 344555554444444444444445555555554555555554444333333332222 1111 566666
Q ss_pred HHHhhhHHhHHHHHH-HHHHHhcCC
Q 011223 296 VDQLNYVSKIHDQVD-DIIKIVDDG 319 (490)
Q Consensus 296 ~dql~svs~Ihd~L~-~vi~~vdd~ 319 (490)
...+..++.+.-.++ .||+.....
T Consensus 491 ~eave~lKr~fPgv~GrviDLc~pt 515 (1141)
T KOG0018|consen 491 QEAVEALKRLFPGVYGRVIDLCQPT 515 (1141)
T ss_pred HHHHHHHHHhCCCccchhhhccccc
Confidence 666666666655555 555555544
No 201
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=21.39 E-value=9.8e+02 Score=25.26 Aligned_cols=197 Identities=23% Similarity=0.314 Sum_probs=90.2
Q ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcch-hhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhh
Q 011223 62 RLKALAHESIKRRDESTRQRDEALREKEEILRSNDK-LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGL 140 (490)
Q Consensus 62 rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~-~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l 140 (490)
=|+-...+...+||++..+ ..++++|-..|...-+ +-+..-.+.-+||++-.++-+.=..|+.
T Consensus 17 ~lk~~~~e~~ekR~El~~~-~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e--------------- 80 (294)
T COG1340 17 QLKEEIEELKEKRDELRKE-ASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE--------------- 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 3455555555566554322 2234444333322221 3333445556666666666654444333
Q ss_pred hhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCCchhHHHHhhhc--hhHHHHHHHHhhhhhhhhhhHHHHHh
Q 011223 141 RSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKR--TNEIVEELVGQIDATAKSRNDVREQM 218 (490)
Q Consensus 141 ~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KR--tneiveell~Qida~~ksrn~aReQm 218 (490)
|-.-..-|..++.++.-+.+.|-. .||.|.+ .=--+..+=|-+--+ |-+.=.++|..|---.+-=+++..||
T Consensus 81 ---in~kl~eL~~~~~~l~e~~~~~~~--~~~~~~~-ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~ 154 (294)
T COG1340 81 ---INAKLQELRKEYRELKEKRNEFNL--GGRSIKS-LEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKAL 154 (294)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhhhc--cCCCHHH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222255666666555443321 2222222 111111111111111 01112234444444444445566666
Q ss_pred hhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 219 EQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 219 eqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
++.+ .+-+|=|-|-.+|.+...=.-.+..|.....+.-.++..+-++..++|+..++|-.++
T Consensus 155 e~~~-----~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ 216 (294)
T COG1340 155 EENE-----KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEF 216 (294)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 3445556666666655555555555655555555666666666666666666654433
No 202
>PRK04406 hypothetical protein; Provisional
Probab=21.35 E-value=3.8e+02 Score=22.54 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=7.3
Q ss_pred hHHHHhhhHHhHHHHHHHHH
Q 011223 294 LLVDQLNYVSKIHDQVDDII 313 (490)
Q Consensus 294 lL~dql~svs~Ihd~L~~vi 313 (490)
.+..|=.-+..+...|..+.
T Consensus 33 ~v~~Qq~~I~~L~~ql~~L~ 52 (75)
T PRK04406 33 ALSQQQLLITKMQDQMKYVV 52 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 203
>PF04837 MbeB_N: MbeB-like, N-term conserved region; InterPro: IPR006922 This family consists of Mbe/Mob proteins defined by an N-terminal conserved region. These proteins are essential for specific plasmid transfer.
Probab=21.35 E-value=3.8e+02 Score=21.63 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHhHHHHHhhH----HHHhhHHHHHHHHHHhhh
Q 011223 349 MESIYQLTRIVVEKTRDLVQKKS----REVKSLNEAVGQLVKEKE 389 (490)
Q Consensus 349 ~ksI~eLAkeV~~Kv~~~~E~kk----kE~keLE~sV~~L~kEne 389 (490)
|..|++||+..+.|...--+.-. .....+|..|..-.++.+
T Consensus 1 MS~il~LA~~feqkskeqa~ste~~vk~af~~~E~~l~~~L~~s~ 45 (52)
T PF04837_consen 1 MSEILNLAKDFEQKSKEQAESTEQMVKNAFEQHEKSLSAALKESE 45 (52)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56899999999888765444333 333356666655555444
No 204
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.22 E-value=1.2e+02 Score=28.18 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=26.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 266 EIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 266 ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
.+-.||+.||+.|.+|+.+..-||.-+.+|-.
T Consensus 64 AVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 64 AVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34558889999999999999888888887764
No 205
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=20.60 E-value=5.4e+02 Score=21.93 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=41.5
Q ss_pred hhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCcccCC--chh-----------HHHHhhhchhHHHHHHHHhhhhh
Q 011223 141 RSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG--LPA-----------VVYGVIKRTNEIVEELVGQIDAT 207 (490)
Q Consensus 141 ~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP~SqKYtG--L~A-----------iaygv~KRtneiveell~Qida~ 207 (490)
-.++.++.+-+..++.+++...++..+. +|+..-.+.| +.. +--.|+.-....+...++++..+
T Consensus 23 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~ 99 (194)
T cd07307 23 LKELPAAAEKLSEALQELGKELPDLSNT---DLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKR 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888766553331 2332222211 111 22233444444444555666777
Q ss_pred hhhhhHHHHHhh
Q 011223 208 AKSRNDVREQME 219 (490)
Q Consensus 208 ~ksrn~aReQme 219 (490)
.|.++.+|..++
T Consensus 100 ~k~~~~~~~~yd 111 (194)
T cd07307 100 RKKLDKARLDYD 111 (194)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 206
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.52 E-value=3.4e+02 Score=28.15 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=37.3
Q ss_pred HHHHHHHhHHHHHHHH---HhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHH
Q 011223 253 LEKSLIEKDEKVAEIE---SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIK 314 (490)
Q Consensus 253 l~ks~~eke~~i~ele---~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~ 314 (490)
|+.-..+|++-+.+++ -|+++.++++.+++.+..-|++.+..|. +-|..+++++.++..
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~---~ev~~L~~r~~ELe~ 205 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP---GEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHhcc
Confidence 4444555555444443 3778888999999888877777666554 345556666655443
No 207
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=20.51 E-value=1.2e+03 Score=25.75 Aligned_cols=385 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred cccccccCccccCCC---CchhhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHH
Q 011223 8 AVLSDVEGEIDVQTS---SDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEA 84 (490)
Q Consensus 8 avlsdv~~d~~~~~~---~~~~~~~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a 84 (490)
+++|=|.|=+..++| .........|.-+-.+|..=+.-...+|..+.....-+.+-|.++.+.=.|=......+..|
T Consensus 9 ~Avs~FG~~~~~k~~~~~e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a 88 (522)
T PF05701_consen 9 EAVSLFGGSIDWKKHQSLERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQA 88 (522)
T ss_pred HHHHHcCCccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH------------HHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhh
Q 011223 85 LRE------------KEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152 (490)
Q Consensus 85 ~r~------------ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~ 152 (490)
..+ +.-+-......-.+|+.+..+-..+..-|+-+...=..-|..++-+.-+++..-+.++.+.+++-
T Consensus 89 ~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~ 168 (522)
T PF05701_consen 89 EEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAE 168 (522)
T ss_pred HHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhcccCCCCCCCCCCCCCCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeeeehhh
Q 011223 153 TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSEL 232 (490)
Q Consensus 153 sg~Ekis~k~s~~k~f~~~~lP~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIEVSqL 232 (490)
.-.+++. .-.--|-++++-.+-.---...+.+.|..+..+.++.-....-++-+-
T Consensus 169 ~~~~kve-------------------------~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leea 223 (522)
T PF05701_consen 169 ENEEKVE-------------------------ELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEA 223 (522)
T ss_pred HHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHH
Q 011223 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDI 312 (490)
Q Consensus 233 EAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~v 312 (490)
+.-+.+|+.++ +...+|+..+..--..|..|..|+...+. ..++... ..+......-..+.++...|...
T Consensus 224 e~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~--~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~a 293 (522)
T PF05701_consen 224 EEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKE--SKLEEEA----EAKEKSSELQSSLASAKKELEEA 293 (522)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhH----HhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHH
Q 011223 313 IKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIV 392 (490)
Q Consensus 313 i~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~ 392 (490)
-..|. ...+.+..+..-+.++-. ++ .++..-+..-+.........|.+|..+-.-+.
T Consensus 294 k~~L~-------------------~~k~E~~~L~~~vesL~~---EL-e~~K~el~~lke~e~~a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 294 KKELE-------------------KAKEEASSLRASVESLRS---EL-EKEKEELERLKEREKEASSEVSSLEAELNKTR 350 (522)
T ss_pred HHHHH-------------------HHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q ss_pred HHHHHHhhhhcccC-CCCchhhHHHHHHhhhhhhccccchhcccCCCCCCCCccccCCccchhHHHHHHHHHHHHHHHHH
Q 011223 393 SLLRSALSKRMSVD-PSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKAS 471 (490)
Q Consensus 393 sLLRsALsEKea~E-~eqkrseLLQiAE~GLrevGfgF~~~~i~Gdg~~e~S~d~~~~~seeedEVySLAsalEniMK~s 471 (490)
+=|.++-.+-.... .....+.-||- +.+-+-....-....
T Consensus 351 ~eLea~~~~e~~~k~~~~~l~~~Lqq---------------------------------------l~~Eae~Ak~ea~~~ 391 (522)
T PF05701_consen 351 SELEAAKAEEEKAKEAMSELPKALQQ---------------------------------------LSSEAEEAKKEAEEA 391 (522)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 011223 472 QLEIVELRHSVEELRVEF 489 (490)
Q Consensus 472 qlEI~eLrhslEEsRsE~ 489 (490)
+.|+..++.-++..++.+
T Consensus 392 ~~E~~~~k~E~e~~ka~i 409 (522)
T PF05701_consen 392 KEEVEKAKEEAEQTKAAI 409 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Done!