Query 011223
Match_columns 490
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 03:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 96.8 0.22 7.4E-06 42.8 19.8 9 50-58 40-48 (284)
2 1i84_S Smooth muscle myosin he 95.4 0.043 1.5E-06 61.4 9.5 33 31-63 858-890 (1184)
3 1i84_S Smooth muscle myosin he 95.1 0.021 7.1E-07 63.9 6.1 36 29-64 863-898 (1184)
4 1c1g_A Tropomyosin; contractIl 89.4 9.3 0.00032 32.6 27.1 9 55-63 38-46 (284)
5 3na7_A HP0958; flagellar bioge 87.1 8.3 0.00028 36.1 12.5 55 227-288 32-86 (256)
6 3oja_B Anopheles plasmodium-re 83.5 11 0.00037 37.9 12.2 114 205-321 473-586 (597)
7 3na7_A HP0958; flagellar bioge 79.8 40 0.0014 31.5 16.3 73 230-302 14-86 (256)
8 3vkg_A Dynein heavy chain, cyt 78.4 1.2E+02 0.0043 38.5 20.9 26 230-255 2038-2063(3245)
9 3nmd_A CGMP dependent protein 69.0 6.6 0.00023 32.1 4.8 42 229-270 21-62 (72)
10 3mq9_A Bone marrow stromal ant 65.7 25 0.00087 34.5 9.2 102 181-286 360-467 (471)
11 2v71_A Nuclear distribution pr 65.5 48 0.0017 31.0 10.5 70 228-297 50-123 (189)
12 3hnw_A Uncharacterized protein 64.3 14 0.00048 32.6 6.4 62 228-289 69-130 (138)
13 2v71_A Nuclear distribution pr 62.1 64 0.0022 30.2 10.7 122 253-393 47-175 (189)
14 2fxo_A Myosin heavy chain, car 59.9 74 0.0025 27.3 10.0 94 202-299 27-120 (129)
15 2b9c_A Striated-muscle alpha t 58.9 34 0.0012 30.5 8.0 106 190-302 12-120 (147)
16 3oja_A Leucine-rich immune mol 58.9 79 0.0027 31.2 11.4 103 198-300 374-487 (487)
17 2b5u_A Colicin E3; high resolu 58.0 22 0.00074 38.1 7.5 101 95-216 323-423 (551)
18 3oja_B Anopheles plasmodium-re 57.3 89 0.003 31.3 11.5 26 232-257 507-532 (597)
19 3a7p_A Autophagy protein 16; c 57.0 43 0.0015 30.7 8.3 65 233-297 67-131 (152)
20 3zbh_A ESXA; unknown function, 44.3 35 0.0012 26.1 5.0 37 454-490 11-47 (99)
21 3he5_A Synzip1; heterodimeric 43.4 44 0.0015 25.3 5.1 41 240-280 9-49 (49)
22 2dfs_A Myosin-5A; myosin-V, in 42.5 63 0.0021 36.7 8.5 29 261-289 983-1011(1080)
23 2v66_B Nuclear distribution pr 42.1 1.7E+02 0.0059 25.4 10.8 80 234-313 3-90 (111)
24 3vkg_A Dynein heavy chain, cyt 37.9 3.4E+02 0.012 34.8 14.4 31 407-437 2121-2155(3245)
25 1dip_A Delta-sleep-inducing pe 37.8 16 0.00055 30.4 2.2 29 269-297 15-43 (78)
26 3a6m_A Protein GRPE, HSP-70 co 37.8 40 0.0014 30.8 5.1 58 218-280 1-58 (177)
27 3tnu_B Keratin, type II cytosk 35.3 2.1E+02 0.0071 24.3 9.8 58 229-289 38-95 (129)
28 2dfs_A Myosin-5A; myosin-V, in 33.7 5.8E+02 0.02 29.0 14.5 13 376-388 1020-1032(1080)
29 3tnu_A Keratin, type I cytoske 33.1 2.3E+02 0.0078 24.2 10.2 59 228-289 39-97 (131)
30 2oqq_A Transcription factor HY 32.6 68 0.0023 24.0 4.6 33 265-297 6-38 (42)
31 3tnu_A Keratin, type I cytoske 32.5 2.3E+02 0.008 24.1 11.0 83 31-151 46-128 (131)
32 1cii_A Colicin IA; bacteriocin 32.3 4.8E+02 0.017 28.2 12.6 127 220-391 356-482 (602)
33 3iv1_A Tumor susceptibility ge 31.7 1.6E+02 0.0055 24.3 7.2 63 209-282 11-73 (78)
34 1gk4_A Vimentin; intermediate 31.7 82 0.0028 25.3 5.4 35 228-265 34-71 (84)
35 1fxk_C Protein (prefoldin); ar 30.9 2E+02 0.0068 24.0 7.9 64 272-337 4-67 (133)
36 3mtu_A Tropomyosin alpha-1 cha 30.8 1.4E+02 0.0049 23.7 6.7 49 261-310 8-65 (75)
37 1zxa_A CGMP-dependent protein 30.6 67 0.0023 25.8 4.6 39 247-285 10-48 (67)
38 4etp_A Kinesin-like protein KA 30.3 81 0.0028 31.8 6.3 11 461-471 327-337 (403)
39 1ci6_A Transcription factor AT 30.2 1.4E+02 0.0046 23.0 6.2 14 263-276 45-58 (63)
40 3hnw_A Uncharacterized protein 29.1 2.4E+02 0.0081 24.8 8.4 15 191-205 31-45 (138)
41 1gk4_A Vimentin; intermediate 29.0 2.2E+02 0.0076 22.7 9.3 78 37-152 1-78 (84)
42 1ic2_A Tropomyosin alpha chain 28.7 2.1E+02 0.0072 22.6 7.3 50 237-286 9-58 (81)
43 1gd2_E Transcription factor PA 28.6 96 0.0033 24.8 5.2 43 245-287 26-68 (70)
44 1fzc_C Fibrin; blood coagulati 27.5 46 0.0016 33.2 3.9 44 228-285 5-48 (319)
45 4emc_A Monopolin complex subun 27.3 1.6E+02 0.0054 27.9 7.2 50 204-257 1-50 (190)
46 3trt_A Vimentin; cytoskeleton, 27.1 91 0.0031 24.1 4.8 35 455-489 38-72 (77)
47 4etp_A Kinesin-like protein KA 26.9 85 0.0029 31.6 5.8 9 327-335 112-120 (403)
48 2w83_C C-JUN-amino-terminal ki 26.4 1.6E+02 0.0053 24.5 6.2 59 86-158 9-67 (77)
49 1ci6_A Transcription factor AT 26.1 1.1E+02 0.0038 23.5 5.1 31 261-291 22-52 (63)
50 1wj5_A Hypothetical protein (r 25.8 70 0.0024 28.4 4.3 19 412-430 77-95 (120)
51 1vcs_A Vesicle transport throu 25.5 2.4E+02 0.0083 23.2 7.4 77 233-311 11-88 (102)
52 3o0z_A RHO-associated protein 24.8 4.2E+02 0.014 24.5 10.0 30 228-257 42-71 (168)
53 3mq7_A Bone marrow stromal ant 24.5 1.4E+02 0.0048 26.5 6.0 83 212-295 15-104 (121)
54 3iv1_A Tumor susceptibility ge 23.2 2.7E+02 0.0093 22.9 7.1 52 238-289 15-73 (78)
55 2qyw_A Vesicle transport throu 23.2 3.1E+02 0.011 22.6 7.6 72 232-304 20-92 (102)
56 3ghg_A Fibrinogen alpha chain; 23.1 2.2E+02 0.0074 30.8 8.1 43 227-269 109-152 (562)
57 3nmd_A CGMP dependent protein 22.8 2E+02 0.0067 23.5 6.1 39 250-288 21-59 (72)
58 2yy0_A C-MYC-binding protein; 22.6 63 0.0021 24.5 3.0 25 247-271 18-42 (53)
59 3tnu_B Keratin, type II cytosk 22.6 3.5E+02 0.012 22.9 10.9 82 32-151 45-126 (129)
60 2e7s_A RAB guanine nucleotide 22.3 84 0.0029 28.2 4.2 27 229-255 3-29 (135)
61 2jee_A YIIU; FTSZ, septum, coi 22.2 3.4E+02 0.012 22.5 9.5 67 251-317 9-79 (81)
62 4ani_A Protein GRPE; chaperone 22.1 5E+02 0.017 24.5 11.3 13 342-354 135-147 (213)
63 1ses_A Seryl-tRNA synthetase; 22.0 1.4E+02 0.0049 30.1 6.4 79 210-290 10-92 (421)
64 3u06_A Protein claret segregat 21.7 1.7E+02 0.006 29.6 6.9 50 267-316 8-57 (412)
65 4fla_A Regulation of nuclear P 21.5 3E+02 0.01 24.6 7.7 34 232-265 84-117 (152)
66 2no2_A HIP-I, huntingtin-inter 21.1 3.3E+02 0.011 23.1 7.5 63 69-148 5-67 (107)
67 4e61_A Protein BIM1; EB1-like 20.8 1.6E+02 0.0054 25.6 5.5 38 252-289 8-52 (106)
68 3efg_A Protein SLYX homolog; x 20.6 1.8E+02 0.0062 23.4 5.5 49 230-278 10-58 (78)
69 3gwk_C SAG1039, putative uncha 20.6 1.7E+02 0.0059 22.5 5.3 37 454-490 10-46 (98)
70 3onj_A T-snare VTI1; helix, HA 20.5 3.5E+02 0.012 22.1 8.0 71 236-308 10-83 (97)
71 2ocy_A RAB guanine nucleotide 20.3 4.9E+02 0.017 23.7 12.0 35 30-64 58-92 (154)
72 1hjb_A Ccaat/enhancer binding 20.1 54 0.0019 27.2 2.4 39 201-243 21-59 (87)
73 4i0x_B ESAT-6-like protein MAB 20.0 1.7E+02 0.0059 23.3 5.3 40 451-490 10-51 (103)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.78 E-value=0.22 Score=42.80 Aligned_cols=9 Identities=22% Similarity=0.387 Sum_probs=3.2
Q ss_pred HhhHHHHHH
Q 011223 50 ENSATELSE 58 (490)
Q Consensus 50 e~s~~e~~~ 58 (490)
+....++..
T Consensus 40 ~~~~~~~~~ 48 (284)
T 1c1g_A 40 EDELVSLQK 48 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.39 E-value=0.043 Score=61.44 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 011223 31 RFREVLAELNRERQAREAAENSATELSEKFNRL 63 (490)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rl 63 (490)
.+.++-.+|..-+..-...+....+++.....|
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343334333333333333334444444333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.15 E-value=0.021 Score=63.92 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q 011223 29 VERFREVLAELNRERQAREAAENSATELSEKFNRLK 64 (490)
Q Consensus 29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlk 64 (490)
.+++.++-+.|.+....+..++.....++...+.++
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554444444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=89.44 E-value=9.3 Score=32.61 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.3
Q ss_pred HHHHHHHhh
Q 011223 55 ELSEKFNRL 63 (490)
Q Consensus 55 e~~~~f~rl 63 (490)
.+...+..+
T Consensus 38 ~~~~~~~~~ 46 (284)
T 1c1g_A 38 QLEDELVSL 46 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=87.12 E-value=8.3 Score=36.13 Aligned_cols=55 Identities=4% Similarity=0.092 Sum_probs=39.4
Q ss_pred eeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 011223 227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (490)
Q Consensus 227 IEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l 288 (490)
-||..|++.+.+++..+......++++++.....+..|. .++.++..+..++.+.
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~-------~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ-------DTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcc
Confidence 567788888888888877777777777666665555555 7777777777776443
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.55 E-value=11 Score=37.90 Aligned_cols=114 Identities=8% Similarity=0.016 Sum_probs=47.2
Q ss_pred hhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 011223 205 DATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDK 284 (490)
Q Consensus 205 da~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~k 284 (490)
+...+.-+..++.++.+--...+.+.++......+.+++.+-......+++........+.+..++...+++.+.+++..
T Consensus 473 ~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 552 (597)
T 3oja_B 473 IQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHH
Confidence 33334444444455544434444443333333333333332222222222222222333333333333444444444444
Q ss_pred hhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCc
Q 011223 285 LKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL 321 (490)
Q Consensus 285 l~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~ 321 (490)
+ +.++..+.+.-.-...+...+....+.++++-.
T Consensus 553 ~---~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 553 L---DNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred H---hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4 333444444444556666777777777776654
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.84 E-value=40 Score=31.52 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=30.3
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhH
Q 011223 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~sv 302 (490)
..+...|.+++.....--..+..|+..+..-...+..+..++..++..+..++..+..+..+-.-.-.+++.+
T Consensus 14 Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444443333334444444444444444444444444444444444444433333333333344433
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.43 E-value=1.2e+02 Score=38.54 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=12.4
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHH
Q 011223 230 SELEATISGLREEVAKKSSFIENLEK 255 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~k 255 (490)
.+||+.|..|+++.+...++.+.|+.
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~ 2063 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKT 2063 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444444433
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.02 E-value=6.6 Score=32.11 Aligned_cols=42 Identities=24% Similarity=0.437 Sum_probs=33.3
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHh
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQ 270 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E 270 (490)
|-+|+..+..-.+|+..|-..++.|++.+.+||..|.+|..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888887778888888888888888888888888855553
No 10
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.75 E-value=25 Score=34.54 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=61.4
Q ss_pred CchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhcceeeee--ehhhHHhhhhchHHHhhh----hhhHHHHH
Q 011223 181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIE--VSELEATISGLREEVAKK----SSFIENLE 254 (490)
Q Consensus 181 GL~Aiaygv~KRtneiveell~Qida~~ksrn~aReQmeqrny~IAIE--VSqLEAsis~lr~eva~k----ss~~e~l~ 254 (490)
.+..+.+|-. =..+.++++-.+++... ++.+.++|-|||.=.|. ++++++....+|-..+.- -+.-++|+
T Consensus 360 ~~~~vl~G~~-t~eeal~~~~~~i~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
T 3mq9_A 360 AVINAASGRQ-TVDEALKDAQTRITAAR---DGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD 435 (471)
T ss_dssp HHHHHHHSSS-CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHHHH---HhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH
Confidence 4455555532 34556666666666555 33566667777764442 444555554444433221 13457788
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 011223 255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (490)
Q Consensus 255 ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~ 286 (490)
|.++.-.++|.|+|-|+-.+...+...++.++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 436 AEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888788888888877777777777666663
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.47 E-value=48 Score=31.05 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=53.4
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHH----HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 228 EVSELEATISGLREEVAKKSSFIENL----EKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l----~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
|+.++|..++.|+..++.-..+++.| ..+.++--..|+.|++|+..|+..+..|-.+++.||..+.-|=.
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr 123 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 57778888888888888888888876 34444445568888999999999999998889888866554433
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.25 E-value=14 Score=32.62 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=46.1
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
|.-++...+..|+.++.....++.+|-..+.....++.++.++...+++.+.+|+.++..|+
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666667777788888888888888888888888888888888888777776
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.11 E-value=64 Score=30.23 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=62.2
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh----hhchhHHHHhhhHHhHHHHHHHHHHHhcCCCcccccccc
Q 011223 253 LEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSE 328 (490)
Q Consensus 253 l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE----~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsE 328 (490)
|++.+..-+.+++.|...+..|+.-++.+-.|+.... .+-..|=+.+..+..+++.|-.=|.-+.-...
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ND------- 119 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND------- 119 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------
Confidence 3444444444444444444444444444444443333 23455667778888888888887777765544
Q ss_pred ccCCCcccchhHHHH---HHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH
Q 011223 329 SLFLPQETDMEENIR---ASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS 393 (490)
Q Consensus 329 s~f~~~etD~ee~lK---~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kEneDI~s 393 (490)
|.+...| .+++.+++-|.-|-+ -+.|+|..=.++-.|..++.+|..|-+|...
T Consensus 120 --------dlEr~~R~~~~SleD~e~kln~aiE----r~alLE~El~EKe~l~~~~QRLkdE~rDLk~ 175 (189)
T 2v71_A 120 --------DLERAKRATIMSLEDFEQRLNQAIE----RNAFLESELDEKESLLVSVQRLKDEARDLRQ 175 (189)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC------------
T ss_pred --------HHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 455555555553322 2356666666677888888899888887653
No 14
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=59.93 E-value=74 Score=27.25 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=54.9
Q ss_pred HhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 011223 202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY 281 (490)
Q Consensus 202 ~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~ 281 (490)
..+....+.|.+ |+..+-..--|...|-..+..-++-++..-..++.|.++-.+-+.+|.+++..++...+.+..+
T Consensus 27 e~l~k~e~~r~e----le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 27 EALEKSEARRKE----LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444 4444444455556666666666666677777777776666666777777766666666666666
Q ss_pred HHHhhhhhhhchhHHHHh
Q 011223 282 EDKLKNLESHRPLLVDQL 299 (490)
Q Consensus 282 E~kl~~lE~qr~lL~dql 299 (490)
...-+.++..-.-|-+++
T Consensus 103 ~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 103 TAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555444443343333
No 15
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=58.92 E-value=34 Score=30.51 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=66.5
Q ss_pred hhchhHHHHHHHHhhhhhhhhhh---HHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 011223 190 IKRTNEIVEELVGQIDATAKSRN---DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE 266 (490)
Q Consensus 190 ~KRtneiveell~Qida~~ksrn---~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~e 266 (490)
+.|+.+-+.......+.+.|.-+ ++|-.+++|.+.-.=-+.+||..+ ..-....+.-.+...+-..|+.-
T Consensus 12 Ler~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qL-------keak~~aeeadrKyeE~~RKl~~ 84 (147)
T 2b9c_A 12 LDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQL-------KEAKHIAEDADRKYEEVARKLVI 84 (147)
T ss_dssp CGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34555555556666666655544 578888888886555556666665 33333444444445555566666
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhH
Q 011223 267 IESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV 302 (490)
Q Consensus 267 le~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~sv 302 (490)
++.+.+-..+++...+.+++.|+..=..+-.+|.|+
T Consensus 85 ~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 85 IESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666777777777777777777776656666666664
No 16
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.90 E-value=79 Score=31.18 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=48.1
Q ss_pred HHHHHhhhhhhhhhhHHHHHhhhhcceeee-eehhhH---HhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH----
Q 011223 198 EELVGQIDATAKSRNDVREQMEQRNFEIAI-EVSELE---ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES---- 269 (490)
Q Consensus 198 eell~Qida~~ksrn~aReQmeqrny~IAI-EVSqLE---Asis~lr~eva~kss~~e~l~ks~~eke~~i~ele~---- 269 (490)
..+-++..+-...+.+.++++.|..+|.+- ++..++ ..+....+..++.-.+.+...+.....-.+|..+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (487)
T 3oja_A 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENAR 453 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhh
Confidence 334444445555666667776666643333 233333 223223333333344444433333333333333333
Q ss_pred ---hHHHHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 270 ---QGLELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 270 ---E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
++.++...+.+-..+++++-.+...|+.|++
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (487)
T 3oja_A 454 LKKLNGEADLALASANATLQELVVREQNLASQLG 487 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhhhHhcccHHHHHHHHHHHHHHhcC
Confidence 4444444455555555555566666666653
No 17
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=58.03 E-value=22 Score=38.12 Aligned_cols=101 Identities=15% Similarity=0.227 Sum_probs=53.9
Q ss_pred cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 011223 95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174 (490)
Q Consensus 95 ~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Ekis~k~s~~k~f~~~~lP 174 (490)
.++.-.||.+++|.-...+..++-+++. .+++++++..+-..|-..+- -+++|-+|...++-
T Consensus 323 ~e~a~ael~~a~k~~a~~~er~~~t~~~--------------~~~~~~~~~~~n~~~~~~~~----~~~~f~~~n~~p~~ 384 (551)
T 2b5u_A 323 YERARAELNQANEDVARNQERQAKAVQV--------------YNSRKSELDAANKTLADAIA----EIKQFNRFAHDPMA 384 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH----HHHHHGGGTTCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHhhhhHHHHHHH----hhhhhhhhccChhh
Confidence 3444455666666555555555544444 34444444333333322222 23566666444443
Q ss_pred CCcccCCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHH
Q 011223 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVRE 216 (490)
Q Consensus 175 ~SqKYtGL~Aiaygv~KRtneiveell~Qida~~ksrn~aRe 216 (490)
-- .++.+.-.. -++|+++=|.-+=.+.|++++.-.+|.-
T Consensus 385 ~G--h~~w~~~~~-~~~~~~~dv~~~~a~~d~~~~~~s~~~~ 423 (551)
T 2b5u_A 385 GG--HRMWQMAGL-KAQRAQTDVNNKQAAFDAAAKEKSDADA 423 (551)
T ss_dssp TH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc--chhhhhccc-hhhhhhhhhhhHHHHHHHHhhcccchhh
Confidence 32 122222111 5889999999999999999776655543
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.26 E-value=89 Score=31.32 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=10.0
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHHH
Q 011223 232 LEATISGLREEVAKKSSFIENLEKSL 257 (490)
Q Consensus 232 LEAsis~lr~eva~kss~~e~l~ks~ 257 (490)
|+..+..+++..+........++++.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 33333333333333333333333333
No 19
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=57.05 E-value=43 Score=30.69 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 233 EAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
-.+|..|+.+++.....+.+|+..+.+|..-+..+.-|+..|+=....++.+++.++.-+.-|++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777888888888888888888888888889999999999999999999976666655
No 20
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=44.28 E-value=35 Score=26.12 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011223 454 EDEIYNLAGALENIVKASQLEIVELRHSVEELRVEFT 490 (490)
Q Consensus 454 edEVySLAsalEniMK~sqlEI~eLrhslEEsRsE~~ 490 (490)
-+++-.+|+.+.+.-..++..+..|+..+..+...|+
T Consensus 11 ~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~ 47 (99)
T 3zbh_A 11 PEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWE 47 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4779999999999999999999999999999877664
No 21
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=43.43 E-value=44 Score=25.26 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=31.0
Q ss_pred hHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 240 r~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
-.|||+--.+-|.|.|.---|..-|+-+++|+-.||.+|++
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 34567777777778777777778888888988888887753
No 22
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.47 E-value=63 Score=36.67 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 261 DEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
+.++..++.|+..+++.+.++-...+.++
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~le 1011 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555444444443333
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.10 E-value=1.7e+02 Score=25.36 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=52.7
Q ss_pred HhhhhchHHHhhhhhhHHHHHH----HHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH----HhhhHHhH
Q 011223 234 ATISGLREEVAKKSSFIENLEK----SLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVD----QLNYVSKI 305 (490)
Q Consensus 234 Asis~lr~eva~kss~~e~l~k----s~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d----ql~svs~I 305 (490)
..++.|+..++.=..++|.|-. +.++--..++.|++|+..|++....|-.+++.||..+.=|=. ...|+.-+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 3455666666666666766644 334445679999999999999999999999999965554433 23344444
Q ss_pred HHHHHHHH
Q 011223 306 HDQVDDII 313 (490)
Q Consensus 306 hd~L~~vi 313 (490)
...+...|
T Consensus 83 E~k~n~ai 90 (111)
T 2v66_B 83 EQRLNQAI 90 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
No 24
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.91 E-value=3.4e+02 Score=34.81 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=19.5
Q ss_pred CCCchhhHHHHHHhhhhhhcccc----chhcccCC
Q 011223 407 PSSKTNELFKVAENGLREAGIDF----KFSKLLSD 437 (490)
Q Consensus 407 ~eqkrseLLQiAE~GLrevGfgF----~~~~i~Gd 437 (490)
+..-|..+++-=-.-|++.||.| .+...+|+
T Consensus 2121 ~~~~R~~l~~~W~~~l~~~~Ip~s~~~~l~~~L~~ 2155 (3245)
T 3vkg_A 2121 DQNFRTDLMRKWMIRLDSVGIKFKSDLSVPSFLSK 2155 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCCTTCCHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHcCC
Confidence 44556677776667778888854 34445544
No 25
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=37.83 E-value=16 Score=30.36 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 269 SQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 269 ~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
+||+.||++|.+|+.+...||..+.+|-.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999987777653
No 26
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=37.81 E-value=40 Score=30.82 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=24.5
Q ss_pred hhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 011223 218 MEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNE 280 (490)
Q Consensus 218 meqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e 280 (490)
|+.||-++. +++.+..+..+++.-...++.|++.+.+...++.-+.-|++++|.+...
T Consensus 1 ~~~~~~~~~-----~~~~~~~~~~e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~r 58 (177)
T 3a6m_A 1 MEERNHENT-----LEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEE 58 (177)
T ss_dssp ---CTTTSS-----SGGGGTTTHHHHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHH
T ss_pred Ccccccccc-----hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665543 3344444444444433344444444444444443333355555555543
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.33 E-value=2.1e+02 Score=24.32 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=31.4
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
+++|--+|.+|.-|+..=-+...+|+.++.+-+..-. .++..+...|..+|..|..+.
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGE---LALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHH
Confidence 4455555555555554444444555555544443322 256677777777777775443
No 28
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.69 E-value=5.8e+02 Score=29.01 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHhh
Q 011223 376 SLNEAVGQLVKEK 388 (490)
Q Consensus 376 eLE~sV~~L~kEn 388 (490)
+|++.|..|.+||
T Consensus 1020 ~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 1020 ETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.06 E-value=2.3e+02 Score=24.16 Aligned_cols=59 Identities=29% Similarity=0.417 Sum_probs=34.8
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
|+++|--+|.+|.-|+..--+...+|+.++.+-+..-. .++..++..|..+|..|..+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~---~~l~~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC---MQLAQIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666665555555566555555444332 366677777888777775444
No 30
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.63 E-value=68 Score=24.04 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=17.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHH
Q 011223 265 AEIESQGLELRQLVNEYEDKLKNLESHRPLLVD 297 (490)
Q Consensus 265 ~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~d 297 (490)
++||..+-+|..++.+||.++..|..-+.+|..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444444445555555555555555555555543
No 31
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.46 E-value=2.3e+02 Score=24.10 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHH
Q 011223 31 RFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKD 110 (490)
Q Consensus 31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~d 110 (490)
.+..|-+||+.-+..+.+.|.+.++.+.++..=-.=++.. ++.-=.++...|.
T Consensus 46 ~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~---------------------------i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 46 TMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM---------------------------IGSVEEQLAQLRC 98 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHH
Confidence 3556677777777777777777777776665322222222 2111124456677
Q ss_pred HHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhh
Q 011223 111 EVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML 151 (490)
Q Consensus 111 e~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL 151 (490)
+++.|+.+.-. .--.+-+|-.||.|-.++|
T Consensus 99 em~~ql~EYq~-----------Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 99 EMEQQNQEYKI-----------LLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhH
Confidence 78887766211 1222556899999999887
No 32
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=32.29 E-value=4.8e+02 Score=28.16 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=81.7
Q ss_pred hhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHh
Q 011223 220 QRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299 (490)
Q Consensus 220 qrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql 299 (490)
||=-.+-=|..++++.|+-++--|...+.++-..+..+..+++.-..++..+.++++++.+-..|. +....+-|.+
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~----dE~~aIKDAV 431 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQ----DELKATKDAI 431 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhh----hHHHHHHHHH
Confidence 553334457788899998888888888888888877777776666666666667777665543332 2333455666
Q ss_pred hhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccchhHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHH
Q 011223 300 NYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNE 379 (490)
Q Consensus 300 ~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD~ee~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~ 379 (490)
...+-++..+.+-+ +++. ..||+++..+ -+=|.+|+.++
T Consensus 432 kfTAdFykkIsEky----GeKy-------------------------------kkIAkELAe~------fKGKKIRSvDD 470 (602)
T 1cii_A 432 NFTTEFLKSVSEKY----GAKA-------------------------------EQLAREMAGQ------AKGKKIRNVEE 470 (602)
T ss_dssp HHHHHHHHHHHHHH----CTHH-------------------------------HHHHHHHHHT------TTTCBCCCHHH
T ss_pred HHHHHHHHHHHHHH----HHHH-------------------------------HHHHHHHHHh------cCCCccCCHHH
Confidence 66665555555443 2222 3566666664 34477888888
Q ss_pred HHHHHHHhhhhH
Q 011223 380 AVGQLVKEKEHI 391 (490)
Q Consensus 380 sV~~L~kEneDI 391 (490)
-+.++.|=+..+
T Consensus 471 ALaSfEKyk~Nl 482 (602)
T 1cii_A 471 ALKTYEKYRADI 482 (602)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHhcCh
Confidence 888887755544
No 33
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=31.69 E-value=1.6e+02 Score=24.30 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=36.5
Q ss_pred hhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 011223 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYE 282 (490)
Q Consensus 209 ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E 282 (490)
|=|.+.||.|.|-.-+| .|+-+-.+|+-.=.+-++.. +..-+..-+++++.++.|+++..+++
T Consensus 11 KLRrrl~E~~~q~qaEl--------~sLrrT~~EL~~G~~KL~~m---i~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAEL--------NALKRTEEDLKKGHQKLEEM---VTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHH--------HHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888766544 35555556655555555544 44445555555555555665555554
No 34
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=31.66 E-value=82 Score=25.30 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=24.9
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHh---HHHHH
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEK---DEKVA 265 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~ek---e~~i~ 265 (490)
-++.||+.+..+|.+.+.-..+...| +..| |.+|+
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~L---lnvK~~Ld~EIa 71 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDL---LNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHH
Confidence 35778888888888888887777777 5444 44554
No 35
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.87 E-value=2e+02 Score=23.99 Aligned_cols=64 Identities=14% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCcccc
Q 011223 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETD 337 (490)
Q Consensus 272 ~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~etD 337 (490)
..|.+....|...+.++..+..-|-..+.-+....+.|..+-. .++...-=-|..++|+|....
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~ 67 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELK 67 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEEC
Confidence 3455555666666666666666666666666666666665543 223221124556666655543
No 36
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=30.78 E-value=1.4e+02 Score=23.74 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-------Hhhhhh--hhchhHHHHhhhHHhHHHHHH
Q 011223 261 DEKVAEIESQGLELRQLVNEYED-------KLKNLE--SHRPLLVDQLNYVSKIHDQVD 310 (490)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~-------kl~~lE--~qr~lL~dql~svs~Ihd~L~ 310 (490)
..|+..|..|..++.+.+..+|. ||+..| -|.+- .+....+.+|.++||
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e-~e~~~l~~~I~~ILY 65 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE-GENDPVLQRIVDILY 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG-GGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHh
Confidence 34556677778888888888887 888777 11110 022344556666665
No 37
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.58 E-value=67 Score=25.84 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 247 SSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
++.+|.+.+-+..|+.+|.+||.++.+-.+.|.+|...|
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888876666666666655444
No 38
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=30.29 E-value=81 Score=31.76 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 011223 461 AGALENIVKAS 471 (490)
Q Consensus 461 AsalEniMK~s 471 (490)
=++|++.+.+|
T Consensus 327 L~aLg~vI~aL 337 (403)
T 4etp_A 327 LSALGDVIHAL 337 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555444
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.17 E-value=1.4e+02 Score=23.01 Aligned_cols=14 Identities=7% Similarity=0.147 Sum_probs=5.3
Q ss_pred HHHHHHHhHHHHHH
Q 011223 263 KVAEIESQGLELRQ 276 (490)
Q Consensus 263 ~i~ele~E~~~lKe 276 (490)
+|+.|+.|+..||+
T Consensus 45 ~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 45 RADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.07 E-value=2.4e+02 Score=24.80 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=6.8
Q ss_pred hchhHHHHHHHHhhh
Q 011223 191 KRTNEIVEELVGQID 205 (490)
Q Consensus 191 KRtneiveell~Qid 205 (490)
..+-..|++-+++|-
T Consensus 31 ~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 31 QRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344455454444
No 41
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=29.04 E-value=2.2e+02 Score=22.75 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHH
Q 011223 37 AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQL 116 (490)
Q Consensus 37 ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~ 116 (490)
||++.=+..+.+.|.+.++.+.++..=-.=++..| +.-=.++...|.+++.|+
T Consensus 1 ~el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i---------------------------~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 1 CEVDALKGTNESLERQMREMEENFAVEAANYQDTI---------------------------GRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHH
Confidence 35666677777788888888777754222222222 111124455677777776
Q ss_pred HHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhh
Q 011223 117 DEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152 (490)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~ 152 (490)
.+.- +.--.+-+|-.||.|=.++|=
T Consensus 54 ~EYq-----------~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 54 REYQ-----------DLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHH-----------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----------HHHHHHHhhHHHHHHHHHHHc
Confidence 6521 112225568999999999885
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.73 E-value=2.1e+02 Score=22.63 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=29.0
Q ss_pred hhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 011223 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLK 286 (490)
Q Consensus 237 s~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~ 286 (490)
..|+.+.-.-..-++.++..+.+.+.+....+.|+..|+.++.-++..+-
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555666666666666666666666666666553
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.55 E-value=96 Score=24.80 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=30.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 011223 245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN 287 (490)
Q Consensus 245 ~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~ 287 (490)
.|...+..|+..+.+-+.....+..|...|++.|..|..++..
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777776666666777888888888887776643
No 44
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=27.54 E-value=46 Score=33.16 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=24.0
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
|+.+||++|..+ .+.+..|...+...+.+|. .|++.|..++.+.
T Consensus 5 ~~~~lE~~Il~~-------~~~i~~L~~~l~~~~~ki~-------~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 5 EIMKYEASILTH-------DSSIRYLQEIYNSNNQKIV-------NLKEKVAQLEAQC 48 (319)
T ss_dssp -----CTTTTTH-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCh-------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 788999999544 4455556555555556666 5666666666555
No 45
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.34 E-value=1.6e+02 Score=27.93 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=17.6
Q ss_pred hhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHHhhhhhhHHHHHHHH
Q 011223 204 IDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSL 257 (490)
Q Consensus 204 ida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~eva~kss~~e~l~ks~ 257 (490)
+|+-++-.+-|.+||++.. +.|+.|=.-+..|..++..|..+++.|.+.+
T Consensus 1 md~~~~YK~~~q~ql~~ad----~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql 50 (190)
T 4emc_A 1 MDPLTVYKNSVKQQIDSAD----LLVANLVNENFVLSEKLDTKATEIKQLQKQI 50 (190)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777888888765 3456666666566666665555555554433
No 46
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.11 E-value=91 Score=24.10 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011223 455 DEIYNLAGALENIVKASQLEIVELRHSVEELRVEF 489 (490)
Q Consensus 455 dEVySLAsalEniMK~sqlEI~eLrhslEEsRsE~ 489 (490)
+|+-..|+.=...+...+.||++||+.+.-+..|+
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 47
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.92 E-value=85 Score=31.62 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=4.4
Q ss_pred ccccCCCcc
Q 011223 327 SESLFLPQE 335 (490)
Q Consensus 327 sEs~f~~~e 335 (490)
-+.+|-|..
T Consensus 112 FD~VF~~~~ 120 (403)
T 4etp_A 112 FDKIFDQQD 120 (403)
T ss_dssp ESEEECTTC
T ss_pred cCEEECCCC
Confidence 445555433
No 48
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.43 E-value=1.6e+02 Score=24.52 Aligned_cols=59 Identities=31% Similarity=0.401 Sum_probs=44.0
Q ss_pred HHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 011223 86 REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKI 158 (490)
Q Consensus 86 r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL~sg~Eki 158 (490)
|+-|+.++.|..|-.-=.-+|..|++.-.++|+.+-. ++.|+.|+...-....-.-.||
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E--------------~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCE--------------KDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888777778999999999999998777 5668888876655544444443
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.09 E-value=1.1e+02 Score=23.51 Aligned_cols=31 Identities=10% Similarity=0.190 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Q 011223 261 DEKVAEIESQGLELRQLVNEYEDKLKNLESH 291 (490)
Q Consensus 261 e~~i~ele~E~~~lKe~V~e~E~kl~~lE~q 291 (490)
-.++.+++.++..|.+...+|..++..|+..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555533
No 50
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=25.76 E-value=70 Score=28.42 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=15.1
Q ss_pred hhHHHHHHhhhhhhccccc
Q 011223 412 NELFKVAENGLREAGIDFK 430 (490)
Q Consensus 412 seLLQiAE~GLrevGfgF~ 430 (490)
..||+-|=..|++-||-|.
T Consensus 77 ~sifKeAi~~Lqe~G~Vfq 95 (120)
T 1wj5_A 77 QRVFKNALQLLQEKGLVFQ 95 (120)
T ss_dssp HHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHHCCEEEe
Confidence 4566666679999999996
No 51
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.53 E-value=2.4e+02 Score=23.24 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=54.2
Q ss_pred HHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh-hhchhHHHHhhhHHhHHHHHHH
Q 011223 233 EATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSKIHDQVDD 311 (490)
Q Consensus 233 EAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE-~qr~lL~dql~svs~Ihd~L~~ 311 (490)
|.-...+..++-.+.+-+-.+ +-.+|...|.++++.+.+..+.|...|.+++++- ..|+-+.-.+..+.+--+.|-.
T Consensus 11 E~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 11 EQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444555666666655444 2367788999999999999999999999999987 5677666666665554444433
No 52
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.82 E-value=4.2e+02 Score=24.51 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=18.0
Q ss_pred eehhhHHhhhhchHHHhhhhhhHHHHHHHH
Q 011223 228 EVSELEATISGLREEVAKKSSFIENLEKSL 257 (490)
Q Consensus 228 EVSqLEAsis~lr~eva~kss~~e~l~ks~ 257 (490)
-++++|+.+..|++-++.=-..-..|++.+
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665555555555555
No 53
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.47 E-value=1.4e+02 Score=26.55 Aligned_cols=83 Identities=23% Similarity=0.328 Sum_probs=43.2
Q ss_pred hHHHHHhhhhcceeeeeehhhHHhhhhchHHH---hhhhhhHHHHHHHHHHhHH----HHHHHHHhHHHHHHHHHHHHHH
Q 011223 212 NDVREQMEQRNFEIAIEVSELEATISGLREEV---AKKSSFIENLEKSLIEKDE----KVAEIESQGLELRQLVNEYEDK 284 (490)
Q Consensus 212 n~aReQmeqrny~IAIEVSqLEAsis~lr~ev---a~kss~~e~l~ks~~eke~----~i~ele~E~~~lKe~V~e~E~k 284 (490)
|--|-|||=||.---.+ .||=-+-.+||+-- +.=..-+.+|..||..+-. +|.+++-|+..|++.+.....+
T Consensus 15 dGLrAq~ECrN~T~lLq-~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 15 DGLRAVMEARNVTHLLQ-QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566665432211 12222333343322 2333346667666665433 4777777777777777777777
Q ss_pred hhhhhhhchhH
Q 011223 285 LKNLESHRPLL 295 (490)
Q Consensus 285 l~~lE~qr~lL 295 (490)
+..|..++..|
T Consensus 94 ~erlr~~~~~~ 104 (121)
T 3mq7_A 94 VERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhchhh
Confidence 65555544443
No 54
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.23 E-value=2.7e+02 Score=22.93 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=37.5
Q ss_pred hchHHHhhhhhhHHHHHHHH-------HHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 011223 238 GLREEVAKKSSFIENLEKSL-------IEKDEKVAEIESQGLELRQLVNEYEDKLKNLE 289 (490)
Q Consensus 238 ~lr~eva~kss~~e~l~ks~-------~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE 289 (490)
++|+.+....++++.|-+.- .--+.-|..|++|...+...|+-|..|..+|+
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888887775433 23366777788888888888888887776665
No 55
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.17 E-value=3.1e+02 Score=22.62 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=49.6
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh-hhchhHHHHhhhHHh
Q 011223 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSK 304 (490)
Q Consensus 232 LEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE-~qr~lL~dql~svs~ 304 (490)
.|.-...+..++-.+.+-+-.+. +-.+|...|.++++.+++..+.|...|.+++++- ..|+-+.-.+..+.+
T Consensus 20 YE~df~~l~~~i~~kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 20 LHEIFRGLLEDLQGVPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34444455556666666543221 1267788899999999999999999999999987 556666555555443
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.07 E-value=2.2e+02 Score=30.84 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=35.6
Q ss_pred eeeh-hhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 011223 227 IEVS-ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIES 269 (490)
Q Consensus 227 IEVS-qLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~ 269 (490)
-||| +||-.|..|+++|-..-+.+-.|+..+.+---+|..||.
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 899999999999999888888888888777777776666
No 57
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.76 E-value=2e+02 Score=23.50 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 011223 250 IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288 (490)
Q Consensus 250 ~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l 288 (490)
+..|+.-+..|+.+|...+.-+..+...+.++|..+++|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444444444555555554433
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.64 E-value=63 Score=24.53 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhH
Q 011223 247 SSFIENLEKSLIEKDEKVAEIESQG 271 (490)
Q Consensus 247 ss~~e~l~ks~~eke~~i~ele~E~ 271 (490)
.+.+|.|-....+-..|+.+|..+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666544444444444333333
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.55 E-value=3.5e+02 Score=22.86 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHH
Q 011223 32 FREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE 111 (490)
Q Consensus 32 ~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de 111 (490)
+..|-+||+.=+..+.+.|.+.++.+.++..=-.=++.. ++.-=.++...|.+
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~---------------------------i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNK---------------------------LAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHhHHHHHHH
Confidence 445667777777777777777777766654321111111 21111244556777
Q ss_pred HHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhhhhh
Q 011223 112 VVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHML 151 (490)
Q Consensus 112 ~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~~mL 151 (490)
++.|+.+.-. .--.+-+|-.||.|-.++|
T Consensus 98 ~~~ql~EYq~-----------LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 98 MARLLREYQE-----------LMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhH
Confidence 8888766211 1122456899999998887
No 60
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.26 E-value=84 Score=28.23 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred ehhhHHhhhhchHHHhhhhhhHHHHHH
Q 011223 229 VSELEATISGLREEVAKKSSFIENLEK 255 (490)
Q Consensus 229 VSqLEAsis~lr~eva~kss~~e~l~k 255 (490)
||+||-+++.+|..++....-+..+++
T Consensus 3 ~s~LEd~L~~~r~~l~~~~~~~~~le~ 29 (135)
T 2e7s_A 3 LGSLEEQLNKSLKTIASQKAAIENYNQ 29 (135)
T ss_dssp ---CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999888877777755
No 61
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.23 E-value=3.4e+02 Score=22.52 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=39.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhH----HhHHHHHHHHHHHhc
Q 011223 251 ENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYV----SKIHDQVDDIIKIVD 317 (490)
Q Consensus 251 e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~sv----s~Ihd~L~~vi~~vd 317 (490)
+.|+.-+..-=..|.-+.-|+++||+....+.....++...|..|.....-+ +...++|..++..++
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3343333333445555566788888888777777777666666665544433 345566666665554
No 62
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.13 E-value=5e+02 Score=24.48 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=9.0
Q ss_pred HHHHHhhhhhHHH
Q 011223 342 IRASLAGMESIYQ 354 (490)
Q Consensus 342 lK~sL~g~ksI~e 354 (490)
++.+..|+++|+.
T Consensus 135 ~~~l~eGvemi~k 147 (213)
T 4ani_A 135 AKSILQGMEMVYR 147 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4556677777776
No 63
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=22.00 E-value=1.4e+02 Score=30.10 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=40.9
Q ss_pred hhhHHHHHhhhhcceeeeeehhhHHh---hhhchHHHhhhhhhHHHHHHHHHHhH-HHHHHHHHhHHHHHHHHHHHHHHh
Q 011223 210 SRNDVREQMEQRNFEIAIEVSELEAT---ISGLREEVAKKSSFIENLEKSLIEKD-EKVAEIESQGLELRQLVNEYEDKL 285 (490)
Q Consensus 210 srn~aReQmeqrny~IAIEVSqLEAs---is~lr~eva~kss~~e~l~ks~~eke-~~i~ele~E~~~lKe~V~e~E~kl 285 (490)
.-+..++.+..|||.+. |.++-+. --.+.-++..--+.--.++|.+..+. +...++-.++..+++.+..++.++
T Consensus 10 ~~~~~~~~~~~r~~~~~--~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 10 EPEVFHRAIREKGVALD--LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp CHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888752 4443222 22222222222222333334333221 334555567777777777777777
Q ss_pred hhhhh
Q 011223 286 KNLES 290 (490)
Q Consensus 286 ~~lE~ 290 (490)
+.+++
T Consensus 88 ~~~~~ 92 (421)
T 1ses_A 88 REKEA 92 (421)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 64
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.71 E-value=1.7e+02 Score=29.60 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhchhHHHHhhhHHhHHHHHHHHHHHh
Q 011223 267 IESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV 316 (490)
Q Consensus 267 le~E~~~lKe~V~e~E~kl~~lE~qr~lL~dql~svs~Ihd~L~~vi~~v 316 (490)
|+.|+.++++++.+++.+++++.+...-+-+++--.......|.|-+.-+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444333333344333333333344433333
No 65
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=21.53 E-value=3e+02 Score=24.60 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=14.2
Q ss_pred hHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHH
Q 011223 232 LEATISGLREEVAKKSSFIENLEKSLIEKDEKVA 265 (490)
Q Consensus 232 LEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ 265 (490)
|+.-+.+|..|+..|...+..|+.-...-...++
T Consensus 84 L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~ 117 (152)
T 4fla_A 84 LAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLS 117 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333333333
No 66
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=21.08 E-value=3.3e+02 Score=23.08 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCcchhhhhhhhhhhhhhhhhhhh
Q 011223 69 ESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSA 148 (490)
Q Consensus 69 ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de~~kq~~~~~~~~~~~~~~~~~~~~~~~~l~~Ei~~s~ 148 (490)
++|||--|.+.|=.-+-...+++.+....|...+.+|. .....++++-.-+ .+.|+.||+...
T Consensus 5 ~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~--------------le~lk~eL~~~~ 67 (107)
T 2no2_A 5 DLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS---DQGQRKTQEQLEV--------------LESLKQELATSQ 67 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--------------HHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--------------HHHHHHHHHHHH
No 67
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.85 E-value=1.6e+02 Score=25.56 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH-------HHhhhhh
Q 011223 252 NLEKSLIEKDEKVAEIESQGLELRQLVNEYE-------DKLKNLE 289 (490)
Q Consensus 252 ~l~ks~~eke~~i~ele~E~~~lKe~V~e~E-------~kl~~lE 289 (490)
++.+.++...++|.++..++.+|+..|..++ .|||+.|
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 68
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.63 E-value=1.8e+02 Score=23.44 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=20.5
Q ss_pred hhhHHhhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 011223 230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV 278 (490)
Q Consensus 230 SqLEAsis~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V 278 (490)
++||+-|..|-.-+|=---.++.|..-++.-...|..+.+.+..|.+++
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555333333333333344444444444444444444444433333
No 69
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.56 E-value=1.7e+02 Score=22.46 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011223 454 EDEIYNLAGALENIVKASQLEIVELRHSVEELRVEFT 490 (490)
Q Consensus 454 edEVySLAsalEniMK~sqlEI~eLrhslEEsRsE~~ 490 (490)
-+++.+.|..+.+.-.+++..+..|+..+..+.+.|.
T Consensus 10 ~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~ 46 (98)
T 3gwk_C 10 PEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWD 46 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 4679999999999999999999999999999887764
No 70
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.46 E-value=3.5e+02 Score=22.05 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=49.5
Q ss_pred hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh--h-hhchhHHHHhhhHHhHHHH
Q 011223 236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNL--E-SHRPLLVDQLNYVSKIHDQ 308 (490)
Q Consensus 236 is~lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~l--E-~qr~lL~dql~svs~Ihd~ 308 (490)
...+-.++-.+.+-+-++ +-.+|...|.++++.+.+..+.|...|.+++|+ - ..|+-+.-.+..+.+--+.
T Consensus 10 f~~~~~~i~~~l~~~~~~--~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~ 83 (97)
T 3onj_A 10 FKTTLEQAKASLAEAPSQ--PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQS 83 (97)
T ss_dssp HHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555444333 235788899999999999999999999999999 5 5677776666665544443
No 71
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.32 E-value=4.9e+02 Score=23.66 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q 011223 30 ERFREVLAELNRERQAREAAENSATELSEKFNRLK 64 (490)
Q Consensus 30 ~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlk 64 (490)
..+..|.++|.+|+..|..||..+..++.-+.=|-
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777666655554
No 72
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.08 E-value=54 Score=27.23 Aligned_cols=39 Identities=33% Similarity=0.324 Sum_probs=23.6
Q ss_pred HHhhhhhhhhhhHHHHHhhhhcceeeeeehhhHHhhhhchHHH
Q 011223 201 VGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEV 243 (490)
Q Consensus 201 l~Qida~~ksrn~aReQmeqrny~IAIEVSqLEAsis~lr~ev 243 (490)
-+-..|+.|||+-++. |+-+++.+|.+||.-=..|+.+|
T Consensus 21 ~rNN~AarrSR~krk~----r~~e~~~r~~~Le~EN~~Lr~~v 59 (87)
T 1hjb_A 21 ERNNIAVRKSRDKAKM----RNLETQHKVLELTAENERLQKKV 59 (87)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999966653 44455666666666554444433
No 73
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.02 E-value=1.7e+02 Score=23.26 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cC
Q 011223 451 ETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRVE--FT 490 (490)
Q Consensus 451 seeedEVySLAsalEniMK~sqlEI~eLrhslEEsRsE--~~ 490 (490)
.-.-+++-+.|+.|..+.+.++..+.+|+..|..+++. |+
T Consensus 10 ~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~ 51 (103)
T 4i0x_B 10 SFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWA 51 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 34456789999999999999999999999999999887 64
Done!