Query 011223
Match_columns 490
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 03:42:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011223.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011223hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 57.9 19 0.0014 27.7 7.7 77 212-290 12-92 (110)
2 d2efla1 a.238.1.4 (A:1-288) Fo 36.5 1E+02 0.0076 25.0 10.3 13 153-165 44-56 (288)
3 d1vcsa1 a.47.2.1 (A:8-96) Vesi 27.7 64 0.0047 24.5 6.2 64 239-304 10-74 (89)
4 d1wa8b1 a.25.3.1 (B:602-695) E 24.6 65 0.0048 23.5 5.6 35 456-490 9-43 (94)
5 d2efka1 a.238.1.4 (A:10-288) C 22.1 1.9E+02 0.014 23.3 14.2 12 152-163 34-45 (279)
6 d1fxkc_ a.2.5.1 (C:) Prefoldin 20.7 1.7E+02 0.012 22.3 9.7 42 293-336 25-66 (133)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 15.3 2.2E+02 0.016 21.3 9.0 28 273-300 69-96 (107)
8 d1x4ta1 a.2.15.1 (A:7-86) Pre- 14.6 1.2E+02 0.0087 23.3 5.1 40 354-393 26-67 (80)
9 d1gqea_ e.38.1.1 (A:) Polypept 13.4 3.7E+02 0.027 24.5 9.3 84 229-312 8-110 (362)
10 d2p0ta1 a.290.1.1 (A:22-169) U 12.1 3.5E+02 0.025 21.9 7.8 75 340-417 61-140 (148)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=57.85 E-value=19 Score=27.69 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=40.1
Q ss_pred hHHHHHhhhhcceeeeeehhhHH---hhhhchHHHhhhhhhHHHHHHHHHH-hHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 011223 212 NDVREQMEQRNFEIAIEVSELEA---TISGLREEVAKKSSFIENLEKSLIE-KDEKVAEIESQGLELRQLVNEYEDKLKN 287 (490)
Q Consensus 212 n~aReQmeqrny~IAIEVSqLEA---sis~lr~eva~kss~~e~l~ks~~e-ke~~i~ele~E~~~lKe~V~e~E~kl~~ 287 (490)
+..++.+..|||.+.| .++-+ ....+.-++..--+.--.++|++.. +-....++-.++..+++.+..++.+++.
T Consensus 12 e~v~~~l~~R~~~~~l--d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~ 89 (110)
T d1seta1 12 EVFHRAIREKGVALDL--EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (110)
T ss_dssp HHHHHHHHHTTCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889988753 33322 2222222222222222233333321 2233455566777888888888777766
Q ss_pred hhh
Q 011223 288 LES 290 (490)
Q Consensus 288 lE~ 290 (490)
++.
T Consensus 90 ~~~ 92 (110)
T d1seta1 90 KEA 92 (110)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.48 E-value=1e+02 Score=25.00 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=7.0
Q ss_pred hhhhhhhcccCCC
Q 011223 153 TGIEKISGKVSNF 165 (490)
Q Consensus 153 sg~Ekis~k~s~~ 165 (490)
.++.|++.+..+.
T Consensus 44 k~L~kl~~~~~~~ 56 (288)
T d2efla1 44 KQLRNLSKKYQPK 56 (288)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhh
Confidence 3456666555443
No 3
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.67 E-value=64 Score=24.50 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=46.4
Q ss_pred chHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhh-hhchhHHHHhhhHHh
Q 011223 239 LREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE-SHRPLLVDQLNYVSK 304 (490)
Q Consensus 239 lr~eva~kss~~e~l~ks~~eke~~i~ele~E~~~lKe~V~e~E~kl~~lE-~qr~lL~dql~svs~ 304 (490)
+-.++..|.+-+-++ +-.+|...|+++++.+++..+.|+..|.+++++- +.|.-+.-.+.++.+
T Consensus 10 l~a~i~~kl~~i~~~--~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~ 74 (89)
T d1vcsa1 10 LTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQ 74 (89)
T ss_dssp HHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 334445555444333 3467899999999999999999999999999998 566666555555543
No 4
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=24.64 E-value=65 Score=23.55 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011223 456 EIYNLAGALENIVKASQLEIVELRHSVEELRVEFT 490 (490)
Q Consensus 456 EVySLAsalEniMK~sqlEI~eLrhslEEsRsE~~ 490 (490)
.+-+.|+.|..+.+.++..+.+|+..+..+++-|.
T Consensus 9 ~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W~ 43 (94)
T d1wa8b1 9 GIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWG 43 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47788999999999999999999999999988763
No 5
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.15 E-value=1.9e+02 Score=23.30 Aligned_cols=12 Identities=8% Similarity=0.091 Sum_probs=6.1
Q ss_pred hhhhhhhhcccC
Q 011223 152 VTGIEKISGKVS 163 (490)
Q Consensus 152 ~sg~Ekis~k~s 163 (490)
..++.|++.+..
T Consensus 34 ak~L~kL~~~~~ 45 (279)
T d2efka1 34 AKQLRSLVKKYL 45 (279)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 344556665543
No 6
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.72 E-value=1.7e+02 Score=22.26 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=17.6
Q ss_pred hhHHHHhhhHHhHHHHHHHHHHHhcCCCccccccccccCCCccc
Q 011223 293 PLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQET 336 (490)
Q Consensus 293 ~lL~dql~svs~Ihd~L~~vi~~vdd~k~~~s~LsEs~f~~~et 336 (490)
..|-..+.-+....+.|..+-.. +++...--+...+|+|...
T Consensus 25 ~~l~~~~~e~~~~~~~L~~l~~~--~~~e~lvplg~~~~v~~~i 66 (133)
T d1fxkc_ 25 EAVRATISELEILEKTLSDIQGK--DGSETLVPVGAGSFIKAEL 66 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--TTCEEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--CCCeEEEEcCCceEEEEEe
Confidence 33333444444455555444321 2221112344566665543
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.27 E-value=2.2e+02 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhhhhchhHHHHhh
Q 011223 273 ELRQLVNEYEDKLKNLESHRPLLVDQLN 300 (490)
Q Consensus 273 ~lKe~V~e~E~kl~~lE~qr~lL~dql~ 300 (490)
.|+.+++.++..++.++.+-.-|-+.+.
T Consensus 69 ~l~~~~e~l~~~i~~l~~q~~~l~~~l~ 96 (107)
T d1fxka_ 69 ELQEKLETLQLREKTIERQEERVMKKLQ 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444443
No 8
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.57 E-value=1.2e+02 Score=23.31 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHH--hhHHHHhhHHHHHHHHHHhhhhHHH
Q 011223 354 QLTRIVVEKTRDLVQ--KKSREVKSLNEAVGQLVKEKEHIVS 393 (490)
Q Consensus 354 eLAkeV~~Kv~~~~E--~kkkE~keLE~sV~~L~kEneDI~s 393 (490)
++.+++..|+..... ..+..+++|+..+..|.+|+.+--.
T Consensus 26 ~iikEI~~kvs~Iqn~~L~e~~IRdLNDeINkL~reK~~WE~ 67 (80)
T d1x4ta1 26 QIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEV 67 (80)
T ss_dssp HHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777665 3578899999999999999987543
No 9
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=13.40 E-value=3.7e+02 Score=24.48 Aligned_cols=84 Identities=14% Similarity=0.297 Sum_probs=0.0
Q ss_pred ehhhHHhhhhchH--HHhhhhhhHHHHHHHHHHhH-----HHHHHHHHhHHHHHHHHHHHHHHhhhhh------------
Q 011223 229 VSELEATISGLRE--EVAKKSSFIENLEKSLIEKD-----EKVAEIESQGLELRQLVNEYEDKLKNLE------------ 289 (490)
Q Consensus 229 VSqLEAsis~lr~--eva~kss~~e~l~ks~~eke-----~~i~ele~E~~~lKe~V~e~E~kl~~lE------------ 289 (490)
+++|...+..||. ++..+...++.|++.++.-+ .+...+.+|...|+..|..|+.....++
T Consensus 8 i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~ee 87 (362)
T d1gqea_ 8 IQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEA 87 (362)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q ss_pred hhchhHHHHhhhHHhHHHHHHHH
Q 011223 290 SHRPLLVDQLNYVSKIHDQVDDI 312 (490)
Q Consensus 290 ~qr~lL~dql~svs~Ihd~L~~v 312 (490)
.-..++-+....+..+...+..+
T Consensus 88 ~deel~~e~~~~l~~l~~~l~~l 110 (362)
T d1gqea_ 88 DDEETFNEAVAELDALEEKLAQL 110 (362)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhhhHH
No 10
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=12.08 E-value=3.5e+02 Score=21.86 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHh-----hhhHHHHHHHHhhhhcccCCCCchhhH
Q 011223 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKE-----KEHIVSLLRSALSKRMSVDPSSKTNEL 414 (490)
Q Consensus 340 e~lK~sL~g~ksI~eLAkeV~~Kv~~~~E~kkkE~keLE~sV~~L~kE-----neDI~sLLRsALsEKea~E~eqkrseL 414 (490)
+.|...+.....-+.......|.+..|.+.==. +=.+.+..++.+ -+++..|.|.|-.|+.+..|+--..+|
T Consensus 61 e~i~~~l~~~~~~~~~~~~~~h~lE~wRdrLi~---~~~~al~e~~~~~P~~DrQ~LRqLiR~A~kE~~~~k~~k~~R~L 137 (148)
T d2p0ta1 61 EAILVLLDQLDASTRQYNERFHNLERWRDRLIA---GDDADLEKFVIEYPDADRQQLRSLIRQAQHEVARNKPPATSRKI 137 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 477888888888888888888899988875321 112345555554 578999999999999887777777889
Q ss_pred HHH
Q 011223 415 FKV 417 (490)
Q Consensus 415 LQi 417 (490)
|++
T Consensus 138 F~~ 140 (148)
T d2p0ta1 138 FKY 140 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
Done!