Query 011224
Match_columns 490
No_of_seqs 486 out of 3547
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 22:58:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0273 Beta-transducin family 100.0 1.8E-63 3.8E-68 449.3 38.0 356 128-490 165-524 (524)
2 KOG0271 Notchless-like WD40 re 100.0 5.1E-59 1.1E-63 410.1 29.9 328 134-487 107-479 (480)
3 KOG0271 Notchless-like WD40 re 100.0 3.5E-51 7.6E-56 360.6 26.8 289 132-446 147-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 6.8E-50 1.5E-54 356.9 24.3 282 139-487 172-458 (459)
5 KOG0286 G-protein beta subunit 100.0 5.2E-45 1.1E-49 311.2 32.8 285 135-446 48-343 (343)
6 KOG0279 G protein beta subunit 100.0 2.9E-44 6.3E-49 304.9 32.2 289 136-489 9-313 (315)
7 KOG0286 G-protein beta subunit 100.0 3.2E-42 7E-47 294.1 33.5 280 199-487 53-343 (343)
8 KOG0318 WD40 repeat stress pro 100.0 1.5E-41 3.3E-46 311.2 39.6 354 135-490 52-561 (603)
9 KOG0296 Angio-associated migra 100.0 4.3E-42 9.2E-47 301.8 34.2 333 132-489 54-398 (399)
10 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-44 6.7E-49 320.8 19.8 248 133-446 208-458 (459)
11 KOG0295 WD40 repeat-containing 100.0 4E-42 8.6E-47 301.8 27.0 299 133-489 99-406 (406)
12 KOG0282 mRNA splicing factor [ 100.0 8E-43 1.7E-47 316.9 22.9 297 125-446 197-503 (503)
13 KOG0319 WD40-repeat-containing 100.0 2.7E-41 5.8E-46 321.3 31.8 336 128-489 89-577 (775)
14 KOG0263 Transcription initiati 100.0 4.2E-42 9.1E-47 330.1 26.1 311 130-477 366-703 (707)
15 KOG0645 WD40 repeat protein [G 100.0 1.4E-39 3E-44 275.3 33.2 289 135-489 7-311 (312)
16 KOG0285 Pleiotropic regulator 100.0 6.5E-41 1.4E-45 293.4 25.7 290 129-487 138-437 (460)
17 KOG0291 WD40-repeat-containing 100.0 3.7E-39 7.9E-44 307.1 39.4 332 134-489 137-550 (893)
18 KOG0284 Polyadenylation factor 100.0 6.5E-42 1.4E-46 304.5 18.7 278 201-487 96-378 (464)
19 KOG0315 G-protein beta subunit 100.0 1.7E-39 3.7E-44 271.4 30.1 285 155-467 11-308 (311)
20 KOG0318 WD40 repeat stress pro 100.0 9.8E-38 2.1E-42 286.3 39.9 331 135-489 183-602 (603)
21 KOG0284 Polyadenylation factor 100.0 1.2E-40 2.5E-45 296.5 19.4 282 142-448 96-380 (464)
22 KOG0279 G protein beta subunit 100.0 3.7E-39 8.1E-44 273.8 27.0 246 134-448 55-313 (315)
23 KOG0319 WD40-repeat-containing 100.0 5.4E-39 1.2E-43 305.6 29.3 344 134-486 184-616 (775)
24 KOG0291 WD40-repeat-containing 100.0 2.3E-37 5E-42 294.9 37.6 322 141-489 264-612 (893)
25 KOG0263 Transcription initiati 100.0 2.8E-39 6E-44 310.7 22.5 271 201-490 378-650 (707)
26 KOG0265 U5 snRNP-specific prot 100.0 6.5E-38 1.4E-42 268.9 27.9 287 134-446 39-336 (338)
27 KOG0265 U5 snRNP-specific prot 100.0 1.5E-37 3.2E-42 266.7 29.2 280 197-486 43-335 (338)
28 KOG0266 WD40 repeat-containing 100.0 3E-37 6.5E-42 304.6 34.0 289 135-488 151-453 (456)
29 PLN00181 protein SPA1-RELATED; 100.0 2.5E-36 5.3E-41 319.9 42.9 289 138-488 479-792 (793)
30 cd00200 WD40 WD40 domain, foun 100.0 2E-36 4.3E-41 282.8 37.2 285 136-446 3-289 (289)
31 KOG0299 U3 snoRNP-associated p 100.0 6.4E-38 1.4E-42 283.4 24.7 289 135-436 135-443 (479)
32 KOG0273 Beta-transducin family 100.0 1.1E-36 2.4E-41 275.9 32.0 277 143-448 236-523 (524)
33 cd00200 WD40 WD40 domain, foun 100.0 2.7E-35 5.9E-40 275.1 38.1 280 199-487 7-289 (289)
34 KOG0293 WD40 repeat-containing 100.0 8.5E-37 1.9E-41 272.2 24.5 301 127-449 209-514 (519)
35 KOG0276 Vesicle coat complex C 100.0 1E-36 2.2E-41 284.7 25.8 286 136-485 7-295 (794)
36 KOG0296 Angio-associated migra 100.0 8E-36 1.7E-40 262.4 28.9 286 135-448 99-398 (399)
37 KOG0281 Beta-TrCP (transducin 100.0 1E-37 2.2E-42 272.4 15.8 268 200-489 196-477 (499)
38 KOG0315 G-protein beta subunit 100.0 4.8E-35 1E-39 244.8 30.2 265 214-489 11-288 (311)
39 KOG0316 Conserved WD40 repeat- 100.0 2.1E-35 4.6E-40 245.0 26.6 291 129-447 4-298 (307)
40 KOG0281 Beta-TrCP (transducin 100.0 1E-36 2.2E-41 266.2 16.4 273 141-452 196-481 (499)
41 KOG0306 WD40-repeat-containing 100.0 4.4E-35 9.6E-40 279.2 28.6 286 136-450 367-666 (888)
42 KOG0772 Uncharacterized conser 100.0 3.9E-35 8.4E-40 268.5 27.1 303 128-486 153-484 (641)
43 KOG0288 WD40 repeat protein Ti 100.0 2.5E-36 5.3E-41 269.5 18.6 289 129-486 162-458 (459)
44 KOG1407 WD40 repeat protein [F 100.0 1.7E-34 3.7E-39 243.2 28.0 283 196-488 15-310 (313)
45 KOG0285 Pleiotropic regulator 100.0 1.7E-35 3.6E-40 259.5 22.2 246 234-490 143-390 (460)
46 KOG0316 Conserved WD40 repeat- 100.0 4.7E-35 1E-39 242.9 22.6 242 234-488 9-256 (307)
47 KOG0313 Microtubule binding pr 100.0 1.3E-34 2.8E-39 256.0 26.3 279 140-448 103-418 (423)
48 KOG0306 WD40-repeat-containing 100.0 4.7E-34 1E-38 272.2 31.9 328 142-487 65-662 (888)
49 KOG0282 mRNA splicing factor [ 100.0 7.1E-36 1.5E-40 271.8 18.6 283 195-487 208-503 (503)
50 KOG0295 WD40 repeat-containing 100.0 5.5E-35 1.2E-39 257.0 20.7 253 228-489 94-364 (406)
51 KOG0292 Vesicle coat complex C 100.0 4.3E-34 9.4E-39 276.7 27.1 279 200-488 8-320 (1202)
52 KOG0275 Conserved WD40 repeat- 100.0 8.4E-35 1.8E-39 252.0 19.8 289 140-487 211-507 (508)
53 KOG0266 WD40 repeat-containing 100.0 3.6E-33 7.7E-38 275.6 31.1 240 201-489 159-409 (456)
54 KOG0645 WD40 repeat protein [G 100.0 9.3E-33 2E-37 234.0 28.9 236 199-487 12-259 (312)
55 KOG0292 Vesicle coat complex C 100.0 8.4E-33 1.8E-37 267.9 32.5 284 138-448 5-321 (1202)
56 KOG0313 Microtubule binding pr 100.0 4.7E-33 1E-37 246.1 27.1 274 200-487 104-416 (423)
57 KOG0973 Histone transcription 100.0 3.1E-33 6.7E-38 278.1 29.0 294 141-489 12-355 (942)
58 KOG0293 WD40 repeat-containing 100.0 1.6E-33 3.6E-38 251.3 24.2 280 198-488 221-512 (519)
59 KOG1407 WD40 repeat protein [F 100.0 1.8E-32 3.9E-37 231.0 28.3 277 136-439 14-293 (313)
60 KOG0274 Cdc4 and related F-box 100.0 4.1E-32 9E-37 267.0 29.6 271 201-490 208-483 (537)
61 KOG0643 Translation initiation 100.0 1.6E-31 3.5E-36 226.0 27.9 280 199-489 8-317 (327)
62 KOG0276 Vesicle coat complex C 100.0 1.3E-32 2.8E-37 257.4 22.4 244 237-488 8-256 (794)
63 KOG0283 WD40 repeat-containing 100.0 1.7E-32 3.8E-37 266.2 24.0 292 140-488 265-575 (712)
64 KOG0277 Peroxisomal targeting 100.0 3.1E-32 6.8E-37 228.7 21.5 275 205-487 12-307 (311)
65 KOG0274 Cdc4 and related F-box 100.0 2.6E-31 5.6E-36 261.4 29.8 285 137-456 202-490 (537)
66 KOG0268 Sof1-like rRNA process 100.0 7E-33 1.5E-37 243.6 16.4 280 136-488 60-344 (433)
67 KOG0641 WD40 repeat protein [G 100.0 1.2E-29 2.7E-34 209.5 34.6 297 141-448 31-349 (350)
68 KOG1063 RNA polymerase II elon 100.0 5.3E-31 1.2E-35 249.5 29.9 335 136-489 261-699 (764)
69 KOG0277 Peroxisomal targeting 100.0 1.2E-31 2.6E-36 225.2 22.7 279 146-447 12-308 (311)
70 KOG0305 Anaphase promoting com 100.0 4.1E-31 8.9E-36 250.5 28.7 272 205-488 181-460 (484)
71 KOG0310 Conserved WD40 repeat- 100.0 3.2E-31 6.8E-36 242.0 26.2 275 201-486 26-306 (487)
72 PLN00181 protein SPA1-RELATED; 100.0 2.2E-30 4.7E-35 274.7 36.5 240 197-489 479-738 (793)
73 KOG0278 Serine/threonine kinas 100.0 4.1E-32 9E-37 227.4 17.9 281 137-487 9-295 (334)
74 PTZ00421 coronin; Provisional 100.0 3E-30 6.5E-35 253.7 33.5 276 141-470 19-314 (493)
75 KOG0640 mRNA cleavage stimulat 100.0 3.4E-31 7.3E-36 228.5 22.4 307 131-448 101-426 (430)
76 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-29 5.8E-34 218.2 33.7 278 138-486 10-300 (311)
77 PTZ00421 coronin; Provisional 100.0 6.2E-30 1.3E-34 251.5 33.5 244 203-489 22-290 (493)
78 KOG0641 WD40 repeat protein [G 100.0 3.5E-29 7.6E-34 206.8 31.9 277 201-488 32-348 (350)
79 KOG0643 Translation initiation 100.0 7.8E-31 1.7E-35 221.8 22.4 287 136-448 4-317 (327)
80 KOG0647 mRNA export protein (c 100.0 6.2E-30 1.3E-34 220.1 27.4 270 140-478 25-312 (347)
81 KOG0278 Serine/threonine kinas 100.0 2E-31 4.4E-36 223.2 15.9 247 135-452 52-301 (334)
82 KOG1539 WD repeat protein [Gen 100.0 2.2E-28 4.8E-33 236.4 38.8 330 132-487 192-646 (910)
83 KOG0300 WD40 repeat-containing 100.0 2E-30 4.2E-35 224.4 21.2 285 135-488 141-475 (481)
84 KOG0973 Histone transcription 100.0 1.5E-29 3.2E-34 252.0 26.5 283 133-451 60-358 (942)
85 KOG0289 mRNA splicing factor [ 100.0 7.4E-29 1.6E-33 223.1 28.1 282 142-488 219-505 (506)
86 KOG0301 Phospholipase A2-activ 100.0 5.1E-29 1.1E-33 236.3 27.0 278 136-448 8-288 (745)
87 PTZ00420 coronin; Provisional 100.0 4E-28 8.7E-33 239.7 34.6 245 159-471 49-318 (568)
88 KOG0294 WD40 repeat-containing 100.0 1.4E-28 3E-33 213.0 27.3 260 134-466 35-304 (362)
89 KOG0299 U3 snoRNP-associated p 100.0 7.1E-29 1.5E-33 225.0 26.3 276 200-486 141-453 (479)
90 PTZ00420 coronin; Provisional 100.0 4.8E-28 1E-32 239.1 33.7 227 219-489 50-293 (568)
91 KOG1036 Mitotic spindle checkp 100.0 2.8E-28 6E-33 210.8 27.8 266 142-479 13-294 (323)
92 KOG0305 Anaphase promoting com 100.0 1.1E-28 2.4E-33 233.9 27.7 276 146-450 181-463 (484)
93 KOG2096 WD40 repeat protein [G 100.0 2E-28 4.3E-33 212.2 26.3 291 131-446 75-400 (420)
94 KOG0308 Conserved WD40 repeat- 100.0 1.6E-29 3.4E-34 238.0 20.2 297 140-489 19-327 (735)
95 KOG0301 Phospholipase A2-activ 100.0 2.2E-28 4.7E-33 232.1 27.3 273 197-489 10-288 (745)
96 KOG1446 Histone H3 (Lys4) meth 100.0 1.8E-27 3.9E-32 206.8 29.8 242 237-489 9-262 (311)
97 KOG0310 Conserved WD40 repeat- 100.0 1.3E-27 2.9E-32 218.4 28.0 276 142-447 26-308 (487)
98 KOG0639 Transducin-like enhanc 100.0 1.4E-28 2.9E-33 225.0 21.4 285 140-489 417-704 (705)
99 KOG1408 WD40 repeat protein [F 100.0 1.1E-27 2.4E-32 227.6 28.3 318 146-488 328-712 (1080)
100 KOG1063 RNA polymerase II elon 100.0 1E-27 2.2E-32 227.4 27.7 345 134-488 183-647 (764)
101 KOG0640 mRNA cleavage stimulat 100.0 6.5E-28 1.4E-32 208.2 21.6 281 199-488 110-425 (430)
102 KOG0289 mRNA splicing factor [ 100.0 1.3E-27 2.8E-32 215.1 24.0 235 202-486 220-459 (506)
103 KOG0275 Conserved WD40 repeat- 100.0 3E-28 6.4E-33 211.5 18.8 238 201-488 213-466 (508)
104 KOG1332 Vesicle coat complex C 100.0 4.6E-28 1E-32 202.6 19.2 254 137-448 6-286 (299)
105 KOG0650 WD40 repeat nucleolar 100.0 1E-27 2.3E-32 223.7 21.5 295 124-445 382-732 (733)
106 KOG0294 WD40 repeat-containing 100.0 1.1E-26 2.5E-31 201.2 26.2 260 216-490 4-282 (362)
107 KOG0264 Nucleosome remodeling 100.0 3.7E-27 8E-32 213.9 24.3 257 138-448 120-404 (422)
108 KOG2106 Uncharacterized conser 100.0 4.7E-25 1E-29 202.2 37.5 312 142-486 200-518 (626)
109 KOG0772 Uncharacterized conser 100.0 9.7E-28 2.1E-32 220.2 19.5 252 199-488 165-444 (641)
110 KOG0288 WD40 repeat protein Ti 100.0 2.1E-28 4.7E-33 218.9 14.5 240 237-489 170-417 (459)
111 KOG1332 Vesicle coat complex C 100.0 1.2E-27 2.6E-32 200.1 17.8 247 200-487 10-284 (299)
112 KOG0308 Conserved WD40 repeat- 100.0 1.1E-27 2.4E-32 225.7 18.9 231 211-489 35-285 (735)
113 KOG2106 Uncharacterized conser 100.0 5E-25 1.1E-29 202.0 35.6 325 134-489 96-477 (626)
114 KOG0300 WD40 repeat-containing 100.0 6.3E-27 1.4E-31 202.7 21.5 273 197-488 144-427 (481)
115 KOG2445 Nuclear pore complex c 100.0 7.7E-26 1.7E-30 195.4 27.0 283 138-469 9-342 (361)
116 KOG4283 Transcription-coupled 100.0 5.3E-26 1.1E-30 195.2 25.6 299 137-447 38-364 (397)
117 KOG0269 WD40 repeat-containing 100.0 3.1E-27 6.8E-32 226.8 19.4 288 144-451 41-343 (839)
118 KOG0264 Nucleosome remodeling 100.0 1.3E-26 2.8E-31 210.4 22.3 248 199-488 122-403 (422)
119 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.2E-24 4.7E-29 203.8 38.7 286 154-469 1-300 (300)
120 KOG1408 WD40 repeat protein [F 100.0 1E-26 2.2E-31 221.1 22.3 303 138-449 365-714 (1080)
121 KOG0267 Microtubule severing p 99.9 4.3E-28 9.3E-33 231.0 11.1 255 152-479 2-258 (825)
122 KOG1274 WD40 repeat protein [G 99.9 2.6E-25 5.6E-30 217.6 30.6 269 200-482 12-293 (933)
123 KOG2096 WD40 repeat protein [G 99.9 5.5E-25 1.2E-29 190.9 26.1 276 198-486 83-399 (420)
124 KOG0283 WD40 repeat-containing 99.9 4.5E-26 9.8E-31 221.8 21.8 242 237-489 261-532 (712)
125 KOG0647 mRNA export protein (c 99.9 2.7E-25 5.9E-30 191.6 23.4 236 200-489 26-281 (347)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.9E-24 1.7E-28 200.0 35.8 264 214-489 2-279 (300)
127 KOG2055 WD40 repeat protein [G 99.9 4.5E-25 9.8E-30 200.4 25.3 281 142-488 213-511 (514)
128 KOG1539 WD repeat protein [Gen 99.9 3.4E-24 7.3E-29 207.7 32.8 319 143-488 160-605 (910)
129 KOG0268 Sof1-like rRNA process 99.9 9.2E-27 2E-31 205.2 13.6 242 234-489 58-302 (433)
130 KOG1274 WD40 repeat protein [G 99.9 6.4E-25 1.4E-29 214.9 26.7 241 239-489 10-262 (933)
131 KOG0269 WD40 repeat-containing 99.9 5.8E-26 1.3E-30 218.2 18.2 237 245-490 42-297 (839)
132 KOG0646 WD40 repeat protein [G 99.9 2E-24 4.3E-29 196.7 23.1 249 214-472 51-332 (476)
133 KOG1273 WD40 repeat protein [G 99.9 4.7E-24 1E-28 184.9 24.0 272 204-488 26-321 (405)
134 KOG2048 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 192.0 35.7 224 136-377 62-301 (691)
135 KOG4283 Transcription-coupled 99.9 1.8E-23 3.8E-28 179.8 25.6 276 200-487 42-363 (397)
136 KOG0267 Microtubule severing p 99.9 5E-26 1.1E-30 217.0 11.0 239 135-440 21-260 (825)
137 KOG1445 Tumor-specific antigen 99.9 4E-24 8.6E-29 201.0 23.5 153 328-489 630-798 (1012)
138 KOG0302 Ribosome Assembly prot 99.9 6E-24 1.3E-28 188.5 21.4 259 137-486 146-435 (440)
139 KOG2048 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 193.1 31.3 278 142-486 25-316 (691)
140 KOG2445 Nuclear pore complex c 99.9 3.8E-23 8.3E-28 178.8 25.2 243 238-487 9-316 (361)
141 KOG0646 WD40 repeat protein [G 99.9 3.2E-23 6.9E-28 188.8 25.3 263 218-489 12-307 (476)
142 KOG0642 Cell-cycle nuclear pro 99.9 2.3E-24 5E-29 200.6 17.5 268 133-419 285-574 (577)
143 KOG4378 Nuclear protein COP1 [ 99.9 7E-24 1.5E-28 194.1 20.3 267 160-490 8-281 (673)
144 KOG0270 WD40 repeat-containing 99.9 3.3E-23 7.1E-28 187.6 23.9 237 204-489 176-449 (463)
145 COG2319 FOG: WD40 repeat [Gene 99.9 2E-20 4.4E-25 184.9 44.2 327 137-489 60-400 (466)
146 KOG1034 Transcriptional repres 99.9 4E-22 8.7E-27 174.0 27.5 297 136-489 32-383 (385)
147 KOG2919 Guanine nucleotide-bin 99.9 1.5E-22 3.3E-27 176.3 23.1 288 146-481 53-362 (406)
148 KOG1036 Mitotic spindle checkp 99.9 2.5E-22 5.5E-27 174.0 24.3 234 201-489 13-262 (323)
149 KOG4328 WD40 protein [Function 99.9 1.8E-22 3.8E-27 183.5 23.1 279 199-487 184-493 (498)
150 KOG0639 Transducin-like enhanc 99.9 2.5E-23 5.3E-28 190.8 17.0 236 144-447 467-703 (705)
151 KOG0302 Ribosome Assembly prot 99.9 8.3E-23 1.8E-27 181.3 19.6 219 237-489 146-378 (440)
152 KOG1009 Chromatin assembly com 99.9 8.4E-22 1.8E-26 176.7 24.6 288 142-488 13-371 (434)
153 KOG0307 Vesicle coat complex C 99.9 3.8E-23 8.2E-28 207.5 16.5 241 202-489 65-327 (1049)
154 KOG4328 WD40 protein [Function 99.9 2E-21 4.4E-26 176.7 24.6 290 136-448 180-495 (498)
155 KOG1273 WD40 repeat protein [G 99.9 2.3E-21 5.1E-26 168.3 23.7 288 131-448 14-322 (405)
156 KOG1538 Uncharacterized conser 99.9 1.3E-21 2.9E-26 185.2 23.9 275 144-488 14-292 (1081)
157 COG2319 FOG: WD40 repeat [Gene 99.9 3.8E-19 8.2E-24 175.8 43.1 327 135-489 101-442 (466)
158 KOG0321 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 185.1 23.0 267 213-488 64-390 (720)
159 KOG0650 WD40 repeat nucleolar 99.9 1.9E-21 4E-26 182.2 24.4 281 197-487 396-733 (733)
160 KOG0321 WD40 repeat-containing 99.9 1.1E-21 2.4E-26 185.1 22.7 285 146-450 53-393 (720)
161 KOG0322 G-protein beta subunit 99.9 1.7E-22 3.6E-27 171.3 15.2 287 130-447 2-322 (323)
162 KOG0270 WD40 repeat-containing 99.9 1.3E-21 2.8E-26 177.3 20.2 249 154-411 192-454 (463)
163 KOG2055 WD40 repeat protein [G 99.9 3.1E-21 6.6E-26 175.6 21.2 240 199-488 211-466 (514)
164 KOG4227 WD40 repeat protein [G 99.9 7.8E-21 1.7E-25 169.5 21.2 293 136-448 50-387 (609)
165 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-20 2.6E-25 173.1 19.9 262 144-430 36-305 (673)
166 KOG1007 WD repeat protein TSSC 99.9 2E-20 4.4E-25 160.7 19.6 256 136-448 57-361 (370)
167 KOG1524 WD40 repeat-containing 99.9 2.3E-20 4.9E-25 172.9 20.7 272 141-446 13-284 (737)
168 KOG0644 Uncharacterized conser 99.9 8.9E-22 1.9E-26 190.7 12.0 281 135-487 183-466 (1113)
169 KOG1009 Chromatin assembly com 99.9 5.6E-20 1.2E-24 165.1 22.6 293 136-452 59-376 (434)
170 KOG1587 Cytoplasmic dynein int 99.9 2.1E-19 4.6E-24 176.0 25.1 241 201-449 242-517 (555)
171 KOG0307 Vesicle coat complex C 99.9 7.8E-21 1.7E-25 191.1 15.1 249 143-451 65-330 (1049)
172 KOG1963 WD40 repeat protein [G 99.8 3.6E-18 7.8E-23 167.7 32.0 280 199-489 203-538 (792)
173 KOG2919 Guanine nucleotide-bin 99.8 2.1E-19 4.5E-24 156.8 20.7 237 204-489 52-327 (406)
174 KOG0649 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 144.3 26.4 267 204-489 13-317 (325)
175 KOG1538 Uncharacterized conser 99.8 5.1E-18 1.1E-22 161.2 30.5 219 134-354 45-292 (1081)
176 KOG0322 G-protein beta subunit 99.8 7.3E-20 1.6E-24 155.4 16.0 245 234-488 6-322 (323)
177 KOG1007 WD repeat protein TSSC 99.8 8E-19 1.7E-23 150.9 22.1 258 222-488 39-360 (370)
178 KOG1963 WD40 repeat protein [G 99.8 1.1E-18 2.5E-23 171.2 25.5 329 140-489 203-583 (792)
179 KOG0642 Cell-cycle nuclear pro 99.8 6.4E-20 1.4E-24 171.2 14.6 246 199-454 292-567 (577)
180 KOG0303 Actin-binding protein 99.8 8.1E-19 1.8E-23 157.0 20.3 209 237-489 76-294 (472)
181 KOG1034 Transcriptional repres 99.8 2.5E-19 5.4E-24 156.7 16.0 267 141-448 88-383 (385)
182 KOG1517 Guanine nucleotide bin 99.8 4.2E-18 9E-23 169.5 26.4 281 143-487 1065-1379(1387)
183 PRK11028 6-phosphogluconolacto 99.8 1.1E-16 2.3E-21 153.2 33.8 270 158-489 6-304 (330)
184 KOG1523 Actin-related protein 99.8 5.7E-18 1.2E-22 147.8 20.4 231 201-479 10-269 (361)
185 KOG1524 WD40 repeat-containing 99.8 3.7E-18 8E-23 158.4 19.7 263 199-486 12-283 (737)
186 KOG1188 WD40 repeat protein [G 99.8 7.5E-18 1.6E-22 148.3 19.1 265 214-487 41-344 (376)
187 KOG0290 Conserved WD40 repeat- 99.8 2.7E-17 5.8E-22 141.7 22.0 271 202-481 45-358 (364)
188 KOG0303 Actin-binding protein 99.8 1.3E-18 2.8E-23 155.7 13.6 159 320-487 76-247 (472)
189 KOG1587 Cytoplasmic dynein int 99.8 9.3E-17 2E-21 157.5 27.8 258 223-489 222-516 (555)
190 KOG1334 WD40 repeat protein [G 99.8 2.2E-18 4.9E-23 158.2 13.7 290 136-450 136-468 (559)
191 KOG2110 Uncharacterized conser 99.8 5.8E-16 1.3E-20 138.0 27.4 232 202-489 6-248 (391)
192 KOG1272 WD40-repeat-containing 99.8 1.5E-18 3.3E-23 158.4 11.0 227 246-486 133-359 (545)
193 PRK01742 tolB translocation pr 99.8 6.3E-17 1.4E-21 159.6 22.1 211 222-488 183-400 (429)
194 PRK01742 tolB translocation pr 99.8 9.4E-17 2E-21 158.4 23.1 213 201-470 203-426 (429)
195 KOG2110 Uncharacterized conser 99.8 1.9E-15 4.2E-20 134.7 28.8 235 142-407 5-249 (391)
196 KOG0649 WD40 repeat protein [G 99.8 2E-15 4.3E-20 127.1 26.5 277 144-446 12-314 (325)
197 KOG0290 Conserved WD40 repeat- 99.8 1.7E-16 3.7E-21 136.9 19.8 229 140-379 94-347 (364)
198 PRK11028 6-phosphogluconolacto 99.8 3.8E-15 8.3E-20 142.5 31.6 265 142-467 34-327 (330)
199 KOG4497 Uncharacterized conser 99.7 5.2E-16 1.1E-20 136.1 22.4 302 144-482 50-425 (447)
200 KOG1310 WD40 repeat protein [G 99.7 2.9E-16 6.3E-21 146.3 21.7 205 136-356 44-304 (758)
201 KOG2139 WD40 repeat protein [G 99.7 7.7E-15 1.7E-19 130.4 27.0 276 143-488 99-430 (445)
202 KOG1523 Actin-related protein 99.7 1.9E-15 4.1E-20 132.3 22.6 228 142-429 10-260 (361)
203 KOG1517 Guanine nucleotide bin 99.7 6.1E-16 1.3E-20 154.4 22.0 255 143-451 1110-1384(1387)
204 KOG0771 Prolactin regulatory e 99.7 1.7E-15 3.7E-20 137.4 22.9 195 288-488 148-353 (398)
205 KOG2111 Uncharacterized conser 99.7 4.8E-15 1E-19 129.8 24.7 235 244-489 7-256 (346)
206 KOG4227 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 134.2 22.5 278 198-486 53-384 (609)
207 PF02239 Cytochrom_D1: Cytochr 99.7 3E-14 6.5E-19 136.2 31.0 306 157-489 9-347 (369)
208 KOG1445 Tumor-specific antigen 99.7 3E-16 6.5E-21 148.5 16.2 235 210-488 588-843 (1012)
209 KOG0644 Uncharacterized conser 99.7 2.4E-17 5.1E-22 160.5 9.0 233 237-488 185-425 (1113)
210 KOG0771 Prolactin regulatory e 99.7 4.6E-16 9.9E-21 141.1 16.3 196 205-449 148-355 (398)
211 KOG3881 Uncharacterized conser 99.7 4.8E-15 1.1E-19 133.1 22.5 275 142-471 55-343 (412)
212 KOG1334 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 144.9 13.7 283 196-487 137-464 (559)
213 KOG2394 WD40 protein DMR-N9 [G 99.7 8.7E-16 1.9E-20 142.9 17.2 195 211-428 183-384 (636)
214 KOG2139 WD40 repeat protein [G 99.7 4.1E-15 8.8E-20 132.2 19.9 241 202-482 99-368 (445)
215 KOG1240 Protein kinase contain 99.7 1.3E-14 2.7E-19 147.4 25.7 303 133-446 1039-1431(1431)
216 KOG1272 WD40-repeat-containing 99.7 1.6E-16 3.4E-21 145.3 11.1 266 144-441 131-402 (545)
217 PF08662 eIF2A: Eukaryotic tra 99.7 1E-14 2.3E-19 126.7 20.6 150 329-489 9-179 (194)
218 KOG2111 Uncharacterized conser 99.7 8.6E-13 1.9E-17 115.8 32.0 233 204-449 8-257 (346)
219 KOG1188 WD40 repeat protein [G 99.7 2.7E-15 5.9E-20 132.4 16.6 185 296-489 41-242 (376)
220 KOG2321 WD40 repeat protein [G 99.7 4.7E-14 1E-18 132.5 23.6 272 199-486 49-340 (703)
221 PRK05137 tolB translocation pr 99.7 1.4E-13 3.1E-18 136.4 28.7 212 223-488 182-411 (435)
222 PRK03629 tolB translocation pr 99.7 1.9E-13 4.1E-18 134.7 29.3 216 201-470 198-428 (429)
223 KOG1409 Uncharacterized conser 99.6 1.7E-14 3.7E-19 127.5 19.1 326 136-490 18-395 (404)
224 PRK04922 tolB translocation pr 99.6 6.8E-14 1.5E-18 138.4 25.6 213 223-488 184-410 (433)
225 PRK05137 tolB translocation pr 99.6 2.5E-13 5.4E-18 134.6 29.0 215 201-470 201-433 (435)
226 PRK02889 tolB translocation pr 99.6 7.2E-14 1.6E-18 137.8 24.5 206 223-481 176-392 (427)
227 PRK03629 tolB translocation pr 99.6 3.9E-13 8.4E-18 132.5 29.2 212 223-487 179-404 (429)
228 PRK04922 tolB translocation pr 99.6 1.6E-13 3.4E-18 135.9 26.5 214 201-469 203-432 (433)
229 KOG1354 Serine/threonine prote 99.6 4.2E-14 9.1E-19 125.0 18.6 267 201-488 25-358 (433)
230 PRK02889 tolB translocation pr 99.6 2.6E-13 5.6E-18 133.9 26.1 217 201-470 195-425 (427)
231 KOG1310 WD40 repeat protein [G 99.6 7.9E-15 1.7E-19 136.9 14.2 215 234-456 42-311 (758)
232 PF08662 eIF2A: Eukaryotic tra 99.6 2E-13 4.4E-18 118.6 22.1 118 324-456 58-186 (194)
233 KOG1240 Protein kinase contain 99.6 9.8E-13 2.1E-17 133.9 25.2 251 194-449 1041-1335(1431)
234 COG5354 Uncharacterized protei 99.6 6.5E-12 1.4E-16 116.9 28.4 313 141-488 31-394 (561)
235 KOG0974 WD-repeat protein WDR6 99.6 2.5E-13 5.5E-18 136.3 20.0 221 214-449 62-289 (967)
236 KOG4497 Uncharacterized conser 99.6 9E-13 1.9E-17 116.0 20.6 271 206-487 13-389 (447)
237 KOG2321 WD40 repeat protein [G 99.6 2.5E-12 5.4E-17 121.1 24.3 281 140-448 49-343 (703)
238 KOG2315 Predicted translation 99.5 1.3E-11 2.8E-16 116.3 27.9 272 202-488 35-389 (566)
239 KOG2041 WD40 repeat protein [G 99.5 3.9E-12 8.4E-17 122.7 24.4 296 143-489 15-337 (1189)
240 TIGR02800 propeller_TolB tol-p 99.5 8E-12 1.7E-16 123.9 27.7 206 223-481 170-386 (417)
241 PF02239 Cytochrom_D1: Cytochr 99.5 2.5E-11 5.4E-16 116.2 29.8 283 146-457 40-356 (369)
242 KOG1354 Serine/threonine prote 99.5 2E-12 4.2E-17 114.6 20.1 315 142-486 25-431 (433)
243 KOG2394 WD40 protein DMR-N9 [G 99.5 5.5E-13 1.2E-17 124.6 17.0 242 201-468 123-383 (636)
244 KOG0974 WD-repeat protein WDR6 99.5 2E-11 4.4E-16 122.9 28.5 199 143-356 88-289 (967)
245 TIGR02800 propeller_TolB tol-p 99.5 1.9E-11 4.2E-16 121.1 28.0 212 202-468 190-417 (417)
246 PRK01029 tolB translocation pr 99.5 2.9E-11 6.3E-16 118.8 26.9 222 203-471 186-426 (428)
247 KOG3881 Uncharacterized conser 99.5 9.8E-12 2.1E-16 112.1 20.9 238 243-489 56-320 (412)
248 KOG2315 Predicted translation 99.5 1.7E-11 3.8E-16 115.5 23.4 293 144-470 75-411 (566)
249 PRK01029 tolB translocation pr 99.5 3.5E-11 7.6E-16 118.2 26.8 216 223-488 165-402 (428)
250 PRK00178 tolB translocation pr 99.5 5.4E-11 1.2E-15 118.1 28.3 212 224-488 180-405 (430)
251 KOG4547 WD40 repeat-containing 99.5 2.4E-11 5.3E-16 115.3 23.2 187 252-449 3-221 (541)
252 PRK00178 tolB translocation pr 99.4 6.6E-11 1.4E-15 117.5 26.4 216 201-470 198-428 (430)
253 PF10282 Lactonase: Lactonase, 99.4 6.6E-09 1.4E-13 99.7 38.8 266 216-489 2-322 (345)
254 PRK04792 tolB translocation pr 99.4 1.1E-10 2.3E-15 115.7 26.9 212 224-488 199-424 (448)
255 KOG2314 Translation initiation 99.4 2.4E-10 5.1E-15 107.7 25.4 314 146-489 214-573 (698)
256 PRK04792 tolB translocation pr 99.4 1.8E-10 3.8E-15 114.2 26.3 216 201-470 217-447 (448)
257 KOG1064 RAVE (regulator of V-A 99.4 1.8E-12 4E-17 136.3 12.4 201 138-415 2204-2407(2439)
258 PF10282 Lactonase: Lactonase, 99.4 4.9E-08 1.1E-12 93.7 41.3 258 202-467 37-345 (345)
259 KOG2314 Translation initiation 99.4 2.5E-10 5.5E-15 107.5 22.9 274 204-489 213-525 (698)
260 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.9E-08 6.3E-13 93.1 36.0 239 209-458 53-340 (352)
261 KOG0280 Uncharacterized conser 99.3 2.5E-10 5.3E-15 99.5 20.3 234 243-486 70-330 (339)
262 KOG4547 WD40 repeat-containing 99.3 4.5E-10 9.7E-15 106.9 23.7 197 151-407 2-221 (541)
263 TIGR03300 assembly_YfgL outer 99.3 1.3E-08 2.7E-13 99.5 34.7 293 153-486 64-376 (377)
264 PLN02919 haloacid dehalogenase 99.3 2.3E-09 5E-14 115.9 31.6 249 205-489 571-888 (1057)
265 KOG0280 Uncharacterized conser 99.3 1E-10 2.3E-15 101.8 16.9 176 298-481 88-277 (339)
266 PF04762 IKI3: IKI3 family; I 99.3 1.7E-08 3.6E-13 107.4 36.7 319 141-488 74-518 (928)
267 KOG1064 RAVE (regulator of V-A 99.3 1.2E-11 2.6E-16 130.3 12.4 246 212-482 2179-2439(2439)
268 PF04762 IKI3: IKI3 family; I 99.3 5.9E-09 1.3E-13 110.8 32.7 272 201-488 75-378 (928)
269 TIGR02658 TTQ_MADH_Hv methylam 99.3 4.2E-08 9.2E-13 92.0 32.9 244 223-489 27-330 (352)
270 KOG2041 WD40 repeat protein [G 99.2 5.2E-09 1.1E-13 101.6 25.4 224 136-379 65-320 (1189)
271 KOG4190 Uncharacterized conser 99.2 2E-11 4.3E-16 114.6 7.7 210 235-487 728-946 (1034)
272 PLN02919 haloacid dehalogenase 99.2 2.4E-08 5.2E-13 108.2 32.1 266 146-452 571-892 (1057)
273 COG5354 Uncharacterized protei 99.2 4.6E-09 1E-13 98.3 22.7 264 200-476 31-332 (561)
274 COG5170 CDC55 Serine/threonine 99.2 3.9E-10 8.6E-15 98.9 14.6 267 201-486 26-364 (460)
275 KOG4190 Uncharacterized conser 99.2 9.8E-11 2.1E-15 110.1 10.7 291 135-486 728-1033(1034)
276 COG2706 3-carboxymuconate cycl 99.2 2.9E-07 6.3E-12 83.3 32.0 259 222-488 15-320 (346)
277 KOG0309 Conserved WD40 repeat- 99.1 6.1E-10 1.3E-14 108.3 13.2 292 142-449 24-340 (1081)
278 COG2706 3-carboxymuconate cycl 99.1 1.6E-06 3.4E-11 78.7 32.9 268 140-467 37-344 (346)
279 KOG0882 Cyclophilin-related pe 99.1 4.1E-09 8.8E-14 97.1 16.5 267 209-486 16-369 (558)
280 TIGR03300 assembly_YfgL outer 99.1 1.2E-07 2.5E-12 92.6 27.4 259 213-489 65-338 (377)
281 PRK04043 tolB translocation pr 99.1 1E-07 2.2E-12 93.3 26.6 202 223-480 169-388 (419)
282 KOG1409 Uncharacterized conser 99.1 6.2E-09 1.3E-13 92.8 15.7 241 198-450 21-272 (404)
283 PF08450 SGL: SMP-30/Gluconola 99.1 1.7E-06 3.7E-11 79.0 32.6 222 206-478 4-244 (246)
284 PF15492 Nbas_N: Neuroblastoma 99.1 3.9E-07 8.4E-12 80.1 25.5 236 148-458 3-269 (282)
285 COG4946 Uncharacterized protei 99.0 4E-07 8.7E-12 84.8 25.4 215 250-478 274-507 (668)
286 KOG1912 WD40 repeat protein [G 99.0 2.5E-07 5.4E-12 91.1 25.1 329 142-489 15-551 (1062)
287 KOG1920 IkappaB kinase complex 99.0 7.9E-07 1.7E-11 92.1 29.3 272 202-488 69-364 (1265)
288 PRK04043 tolB translocation pr 99.0 4.8E-07 1E-11 88.6 26.6 192 203-449 189-401 (419)
289 KOG4532 WD40-like repeat conta 99.0 2.5E-07 5.3E-12 80.1 21.0 223 246-477 71-320 (344)
290 KOG3914 WD repeat protein WDR4 99.0 9.7E-09 2.1E-13 93.6 13.0 166 146-364 66-232 (390)
291 COG4946 Uncharacterized protei 99.0 3.6E-06 7.8E-11 78.7 29.8 168 209-380 327-501 (668)
292 KOG1832 HIV-1 Vpr-binding prot 98.9 1.1E-09 2.4E-14 108.6 6.2 263 135-477 1094-1377(1516)
293 PRK11138 outer membrane biogen 98.9 3.9E-06 8.5E-11 82.3 30.7 305 154-488 69-393 (394)
294 PF13360 PQQ_2: PQQ-like domai 98.9 1.8E-06 3.9E-11 78.4 26.5 216 222-455 2-237 (238)
295 KOG3914 WD repeat protein WDR4 98.9 3.7E-08 8E-13 89.9 14.6 86 319-414 145-231 (390)
296 PF00400 WD40: WD domain, G-be 98.9 5.6E-09 1.2E-13 64.9 5.2 37 134-170 3-39 (39)
297 COG5170 CDC55 Serine/threonine 98.8 1E-07 2.2E-12 84.1 14.4 278 142-446 26-365 (460)
298 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.5E-13 63.4 6.4 39 408-446 1-39 (39)
299 KOG0309 Conserved WD40 repeat- 98.8 7.9E-08 1.7E-12 94.0 14.0 277 202-488 25-338 (1081)
300 KOG2695 WD40 repeat protein [G 98.8 2.5E-08 5.3E-13 89.1 8.7 158 302-469 231-402 (425)
301 PF15492 Nbas_N: Neuroblastoma 98.8 3.4E-06 7.3E-11 74.3 21.7 191 145-364 46-268 (282)
302 KOG4532 WD40-like repeat conta 98.8 3.3E-06 7.2E-11 73.2 20.4 229 212-448 83-331 (344)
303 PF13360 PQQ_2: PQQ-like domai 98.7 1E-05 2.2E-10 73.4 25.1 211 263-489 2-230 (238)
304 KOG2695 WD40 repeat protein [G 98.7 6.5E-08 1.4E-12 86.5 9.4 156 208-365 218-386 (425)
305 KOG1275 PAB-dependent poly(A) 98.7 4.1E-07 9E-12 91.2 16.0 183 253-447 146-341 (1118)
306 KOG4714 Nucleoporin [Nuclear s 98.7 9.1E-07 2E-11 76.3 14.5 164 236-407 83-255 (319)
307 KOG1912 WD40 repeat protein [G 98.6 8E-07 1.7E-11 87.7 14.5 159 327-487 17-184 (1062)
308 PF07433 DUF1513: Protein of u 98.6 0.00021 4.6E-09 65.1 27.9 236 145-438 7-276 (305)
309 KOG2066 Vacuolar assembly/sort 98.6 1.1E-05 2.3E-10 80.4 21.0 180 204-450 42-235 (846)
310 KOG2066 Vacuolar assembly/sort 98.5 1.1E-05 2.4E-10 80.4 18.5 176 295-489 49-233 (846)
311 KOG3621 WD40 repeat-containing 98.5 2.4E-05 5.3E-10 77.0 20.5 149 141-305 32-191 (726)
312 KOG1920 IkappaB kinase complex 98.5 0.00012 2.5E-09 76.6 26.4 197 143-358 69-325 (1265)
313 KOG1645 RING-finger-containing 98.5 3.4E-05 7.4E-10 70.9 20.0 246 199-448 191-461 (463)
314 PRK02888 nitrous-oxide reducta 98.5 5.8E-05 1.3E-09 75.1 22.5 172 305-489 215-404 (635)
315 KOG1275 PAB-dependent poly(A) 98.5 6E-06 1.3E-10 83.2 15.6 178 296-487 148-340 (1118)
316 PRK11138 outer membrane biogen 98.5 0.00024 5.3E-09 69.7 27.2 257 154-447 120-393 (394)
317 PF08450 SGL: SMP-30/Gluconola 98.5 0.00089 1.9E-08 61.0 29.2 205 147-376 4-233 (246)
318 KOG3617 WD40 and TPR repeat-co 98.4 1.6E-05 3.4E-10 79.5 18.0 106 148-272 21-131 (1416)
319 KOG1645 RING-finger-containing 98.4 2.7E-05 5.8E-10 71.6 18.0 241 237-488 188-460 (463)
320 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00062 1.3E-08 65.7 27.9 288 151-477 1-345 (353)
321 KOG4714 Nucleoporin [Nuclear s 98.4 2.1E-06 4.6E-11 74.1 9.4 164 317-489 81-254 (319)
322 KOG2114 Vacuolar assembly/sort 98.4 0.00016 3.6E-09 72.8 23.3 212 208-457 30-252 (933)
323 KOG0882 Cyclophilin-related pe 98.4 3.5E-06 7.6E-11 78.2 10.4 199 284-489 9-231 (558)
324 cd00216 PQQ_DH Dehydrogenases 98.3 0.00036 7.8E-09 70.3 25.9 271 214-489 62-424 (488)
325 cd00216 PQQ_DH Dehydrogenases 98.3 0.0027 5.9E-08 64.0 32.1 295 154-475 61-453 (488)
326 PF07433 DUF1513: Protein of u 98.3 0.0023 5E-08 58.5 27.0 227 246-478 8-275 (305)
327 KOG2114 Vacuolar assembly/sort 98.2 0.00024 5.2E-09 71.7 21.2 188 136-328 58-259 (933)
328 KOG1832 HIV-1 Vpr-binding prot 98.2 1.6E-06 3.5E-11 86.8 4.8 158 316-490 1092-1256(1516)
329 PRK02888 nitrous-oxide reducta 98.1 0.00057 1.2E-08 68.2 20.0 132 334-477 285-449 (635)
330 COG0823 TolB Periplasmic compo 98.1 0.00089 1.9E-08 65.4 21.2 141 329-479 241-389 (425)
331 PF11768 DUF3312: Protein of u 98.0 3.7E-05 8E-10 74.6 10.9 72 416-488 257-328 (545)
332 PF04053 Coatomer_WDAD: Coatom 98.0 0.0036 7.8E-08 61.5 24.8 219 242-488 32-261 (443)
333 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.021 4.6E-07 57.9 33.1 76 398-474 441-518 (527)
334 COG0823 TolB Periplasmic compo 98.0 0.00028 6E-09 69.0 16.4 147 324-480 191-346 (425)
335 PF14583 Pectate_lyase22: Olig 98.0 0.015 3.3E-07 55.0 27.7 271 208-488 42-380 (386)
336 PF06433 Me-amine-dh_H: Methyl 98.0 0.0084 1.8E-07 55.6 24.3 252 206-460 40-332 (342)
337 PF04053 Coatomer_WDAD: Coatom 98.0 0.00042 9.2E-09 67.9 17.0 143 323-488 30-172 (443)
338 PF14655 RAB3GAP2_N: Rab3 GTPa 97.9 0.016 3.4E-07 56.1 26.6 90 326-415 308-407 (415)
339 PF04841 Vps16_N: Vps16, N-ter 97.9 0.025 5.4E-07 55.5 29.5 189 224-430 62-271 (410)
340 PF11768 DUF3312: Protein of u 97.9 8E-05 1.7E-09 72.3 9.6 75 200-275 258-332 (545)
341 PF00780 CNH: CNH domain; Int 97.9 0.023 5E-07 52.7 26.4 226 212-460 6-267 (275)
342 KOG3621 WD40 repeat-containing 97.9 0.00049 1.1E-08 68.1 14.9 120 202-356 34-155 (726)
343 KOG1008 Uncharacterized conser 97.8 5.6E-06 1.2E-10 80.4 1.3 234 202-482 57-328 (783)
344 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.018 3.9E-07 50.6 28.8 68 213-281 63-132 (354)
345 KOG3617 WD40 and TPR repeat-co 97.8 0.00075 1.6E-08 68.1 15.3 259 206-486 20-330 (1416)
346 KOG4640 Anaphase-promoting com 97.8 0.00012 2.7E-09 71.3 9.6 93 367-469 20-115 (665)
347 PF06433 Me-amine-dh_H: Methyl 97.8 0.028 6.1E-07 52.2 24.3 253 223-489 17-320 (342)
348 smart00320 WD40 WD40 repeats. 97.8 5.4E-05 1.2E-09 45.8 4.7 36 135-170 5-40 (40)
349 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.019 4.1E-07 50.4 21.3 189 254-462 23-220 (354)
350 PF04841 Vps16_N: Vps16, N-ter 97.8 0.041 8.9E-07 54.0 26.9 197 265-470 62-270 (410)
351 COG3391 Uncharacterized conser 97.8 0.049 1.1E-06 53.0 30.1 234 245-489 33-283 (381)
352 smart00320 WD40 WD40 repeats. 97.7 0.00012 2.7E-09 44.1 5.9 38 409-446 3-40 (40)
353 PF08596 Lgl_C: Lethal giant l 97.7 0.015 3.3E-07 56.3 22.6 269 203-480 3-327 (395)
354 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.032 6.8E-07 53.9 25.0 280 135-435 35-344 (353)
355 COG3386 Gluconolactonase [Carb 97.7 0.042 9E-07 51.3 24.3 146 326-480 111-276 (307)
356 PF03178 CPSF_A: CPSF A subuni 97.7 0.028 6.1E-07 53.4 23.5 208 265-486 3-262 (321)
357 KOG4640 Anaphase-promoting com 97.6 0.0002 4.4E-09 69.9 8.5 69 420-489 22-92 (665)
358 PF08596 Lgl_C: Lethal giant l 97.5 0.033 7.2E-07 54.0 21.9 220 144-364 3-299 (395)
359 KOG1008 Uncharacterized conser 97.5 2.4E-05 5.2E-10 76.1 0.3 182 296-489 71-275 (783)
360 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.12 2.7E-06 52.5 26.8 268 214-489 70-490 (527)
361 PF08553 VID27: VID27 cytoplas 97.5 0.0032 7E-08 65.4 15.5 136 301-447 500-646 (794)
362 PRK13616 lipoprotein LpqB; Pro 97.5 0.0065 1.4E-07 62.1 17.5 157 326-488 350-524 (591)
363 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.023 5E-07 43.4 15.6 90 389-484 16-109 (111)
364 PF06977 SdiA-regulated: SdiA- 97.4 0.089 1.9E-06 47.4 25.3 198 237-445 16-247 (248)
365 COG3391 Uncharacterized conser 97.4 0.15 3.3E-06 49.6 30.3 217 246-471 77-310 (381)
366 KOG2395 Protein involved in va 97.4 0.005 1.1E-07 59.3 13.9 140 295-447 346-499 (644)
367 PF08553 VID27: VID27 cytoplas 97.4 0.0078 1.7E-07 62.6 16.5 138 344-488 501-646 (794)
368 KOG2444 WD40 repeat protein [G 97.3 0.0011 2.4E-08 56.9 7.8 105 337-449 70-178 (238)
369 COG3386 Gluconolactonase [Carb 97.3 0.17 3.7E-06 47.3 24.4 215 209-435 32-272 (307)
370 PF02897 Peptidase_S9_N: Proly 97.2 0.25 5.5E-06 48.8 29.9 241 143-410 124-408 (414)
371 KOG2079 Vacuolar assembly/sort 97.2 0.016 3.5E-07 60.6 16.1 76 213-288 99-176 (1206)
372 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.054 1.2E-06 41.5 14.8 91 338-444 16-110 (111)
373 PRK13616 lipoprotein LpqB; Pro 97.0 0.16 3.5E-06 52.2 21.4 191 202-440 350-560 (591)
374 PF00780 CNH: CNH domain; Int 96.8 0.41 8.9E-06 44.3 27.1 225 153-417 6-266 (275)
375 KOG4441 Proteins containing BT 96.8 0.31 6.6E-06 50.1 21.5 222 212-449 284-547 (571)
376 PF10647 Gmad1: Lipoprotein Lp 96.8 0.21 4.6E-06 45.5 18.4 143 327-481 25-187 (253)
377 KOG2395 Protein involved in va 96.8 0.023 5E-07 54.9 12.0 144 340-489 349-500 (644)
378 KOG2079 Vacuolar assembly/sort 96.7 0.0071 1.5E-07 63.1 9.1 93 390-482 101-198 (1206)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.21 4.6E-06 48.5 18.3 77 413-489 302-398 (415)
380 PHA02713 hypothetical protein; 96.7 0.19 4.2E-06 51.6 19.3 184 253-451 303-536 (557)
381 PF06977 SdiA-regulated: SdiA- 96.7 0.47 1E-05 42.8 23.1 179 201-380 21-234 (248)
382 PF12894 Apc4_WD40: Anaphase-p 96.5 0.01 2.3E-07 37.7 5.5 34 418-452 11-44 (47)
383 KOG1897 Damage-specific DNA bi 96.5 1.4 3.1E-05 46.4 32.9 321 142-489 530-898 (1096)
384 PF03178 CPSF_A: CPSF A subuni 96.5 0.8 1.7E-05 43.5 25.8 139 213-355 42-202 (321)
385 PF12894 Apc4_WD40: Anaphase-p 96.5 0.01 2.2E-07 37.8 5.4 30 326-355 12-41 (47)
386 TIGR02604 Piru_Ver_Nterm putat 96.5 0.21 4.5E-06 48.5 17.2 144 327-481 15-205 (367)
387 KOG4499 Ca2+-binding protein R 96.5 0.13 2.9E-06 44.6 13.4 138 206-376 113-262 (310)
388 PHA02713 hypothetical protein; 96.5 0.25 5.3E-06 50.8 18.2 209 265-489 273-533 (557)
389 PRK13684 Ycf48-like protein; P 96.4 0.89 1.9E-05 43.4 29.2 148 325-486 172-328 (334)
390 PF02897 Peptidase_S9_N: Proly 96.4 1.2 2.5E-05 44.1 28.6 237 204-453 126-409 (414)
391 KOG2444 WD40 repeat protein [G 96.3 0.0076 1.7E-07 51.9 5.2 100 390-489 72-177 (238)
392 TIGR03074 PQQ_membr_DH membran 96.3 1.6 3.5E-05 46.4 23.2 201 254-456 194-485 (764)
393 PF05096 Glu_cyclase_2: Glutam 96.3 0.84 1.8E-05 41.2 23.3 179 245-436 47-249 (264)
394 KOG1916 Nuclear protein, conta 96.3 0.0017 3.8E-08 66.1 1.3 124 136-271 126-264 (1283)
395 PF14870 PSII_BNR: Photosynthe 96.0 1.3 2.8E-05 41.3 31.0 268 201-486 16-301 (302)
396 KOG4441 Proteins containing BT 96.0 0.58 1.3E-05 48.1 18.0 183 254-451 285-502 (571)
397 PF15390 DUF4613: Domain of un 96.0 0.31 6.7E-06 48.3 14.9 149 326-487 20-184 (671)
398 PF12234 Rav1p_C: RAVE protein 95.8 0.32 6.9E-06 49.7 14.9 92 394-487 47-154 (631)
399 COG3490 Uncharacterized protei 95.5 1.8 3.9E-05 39.1 20.6 181 208-403 120-345 (366)
400 PF05096 Glu_cyclase_2: Glutam 95.3 2.1 4.7E-05 38.6 23.0 180 145-344 47-249 (264)
401 KOG1916 Nuclear protein, conta 95.1 0.016 3.5E-07 59.4 3.2 113 333-448 243-374 (1283)
402 PHA03098 kelch-like protein; P 94.8 1.2 2.7E-05 45.7 16.2 93 265-359 312-418 (534)
403 KOG3630 Nuclear pore complex, 94.8 0.69 1.5E-05 49.4 13.6 140 327-476 102-260 (1405)
404 PF10313 DUF2415: Uncharacteri 94.4 0.17 3.7E-06 31.2 5.1 31 419-449 1-34 (43)
405 PF14870 PSII_BNR: Photosynthe 94.3 4.6 0.0001 37.7 27.6 109 365-484 142-256 (302)
406 TIGR02604 Piru_Ver_Nterm putat 93.9 4.2 9.1E-05 39.4 16.6 102 327-439 73-204 (367)
407 KOG3630 Nuclear pore complex, 93.8 0.32 7E-06 51.7 9.0 152 143-301 101-260 (1405)
408 PF10168 Nup88: Nuclear pore c 93.8 11 0.00023 40.0 22.6 33 324-356 145-180 (717)
409 KOG4499 Ca2+-binding protein R 93.8 4.4 9.5E-05 35.6 20.8 136 326-470 109-264 (310)
410 TIGR03074 PQQ_membr_DH membran 93.7 11 0.00025 40.2 23.3 151 337-489 260-477 (764)
411 PF07995 GSDH: Glucose / Sorbo 93.6 6.9 0.00015 37.3 28.9 73 411-484 246-330 (331)
412 PHA03098 kelch-like protein; P 93.3 4.7 0.0001 41.4 16.8 144 212-359 294-468 (534)
413 COG3204 Uncharacterized protei 93.2 3.9 8.4E-05 37.3 13.6 114 365-488 83-209 (316)
414 PF07569 Hira: TUP1-like enhan 93.2 0.61 1.3E-05 41.3 8.7 64 426-490 18-96 (219)
415 PHA02790 Kelch-like protein; P 93.1 6.8 0.00015 39.6 17.2 104 254-359 272-388 (480)
416 PF15390 DUF4613: Domain of un 93.0 3.7 8E-05 41.1 14.2 148 202-355 20-186 (671)
417 PF10647 Gmad1: Lipoprotein Lp 92.9 7.3 0.00016 35.5 21.3 139 202-380 24-178 (253)
418 PF05694 SBP56: 56kDa selenium 92.8 10 0.00022 36.9 18.7 195 153-356 86-343 (461)
419 KOG2377 Uncharacterized conser 92.8 3 6.4E-05 40.3 12.8 135 209-343 29-171 (657)
420 PF12234 Rav1p_C: RAVE protein 92.7 4 8.6E-05 42.0 14.7 110 329-447 33-155 (631)
421 KOG2280 Vacuolar assembly/sort 92.7 14 0.0003 38.3 18.5 51 222-273 63-113 (829)
422 KOG2377 Uncharacterized conser 92.7 5.4 0.00012 38.6 14.3 125 316-451 57-188 (657)
423 COG3490 Uncharacterized protei 92.5 8 0.00017 35.1 17.1 140 330-477 72-243 (366)
424 COG5167 VID27 Protein involved 92.5 1.9 4.2E-05 42.1 11.3 148 336-489 478-632 (776)
425 PF07995 GSDH: Glucose / Sorbo 92.4 10 0.00022 36.1 26.5 54 390-443 273-330 (331)
426 PF05694 SBP56: 56kDa selenium 92.4 11 0.00025 36.6 23.9 128 344-477 219-391 (461)
427 PF10313 DUF2415: Uncharacteri 92.0 0.55 1.2E-05 29.0 4.7 30 460-489 1-33 (43)
428 COG5167 VID27 Protein involved 91.9 2.6 5.6E-05 41.3 11.3 140 297-448 482-632 (776)
429 PF14583 Pectate_lyase22: Olig 91.6 13 0.00029 35.7 29.8 106 331-447 243-380 (386)
430 TIGR02276 beta_rpt_yvtn 40-res 91.6 1.2 2.6E-05 27.2 6.3 41 428-468 1-42 (42)
431 KOG1897 Damage-specific DNA bi 91.4 23 0.0005 38.0 32.4 309 145-485 586-938 (1096)
432 KOG4460 Nuclear pore complex, 91.3 4 8.7E-05 40.2 12.0 94 244-358 105-201 (741)
433 PF12657 TFIIIC_delta: Transcr 91.3 1.9 4.1E-05 36.7 9.2 36 369-407 87-122 (173)
434 PHA02790 Kelch-like protein; P 91.1 17 0.00038 36.7 17.4 142 212-359 271-427 (480)
435 PF08728 CRT10: CRT10; InterP 91.1 15 0.00032 38.5 16.6 109 293-405 112-245 (717)
436 KOG4460 Nuclear pore complex, 90.9 12 0.00025 37.1 14.7 96 327-453 105-203 (741)
437 PF10168 Nup88: Nuclear pore c 90.6 26 0.00056 37.2 19.8 88 143-231 85-179 (717)
438 COG3204 Uncharacterized protei 90.3 14 0.00031 33.8 21.5 119 238-356 81-211 (316)
439 PF14727 PHTB1_N: PTHB1 N-term 90.3 20 0.00042 35.3 32.2 142 212-354 36-203 (418)
440 TIGR03118 PEPCTERM_chp_1 conse 90.3 15 0.00032 33.9 26.8 243 146-396 26-324 (336)
441 KOG2247 WD40 repeat-containing 90.1 0.05 1.1E-06 52.3 -1.7 132 246-379 38-171 (615)
442 PRK10115 protease 2; Provision 89.5 32 0.00069 36.6 34.6 193 143-355 127-344 (686)
443 PF14781 BBS2_N: Ciliary BBSom 89.5 9.5 0.00021 30.5 13.2 120 331-457 4-134 (136)
444 PF14761 HPS3_N: Hermansky-Pud 89.1 2.7 5.9E-05 36.5 8.2 59 431-489 29-96 (215)
445 PF12657 TFIIIC_delta: Transcr 88.7 2.4 5.2E-05 36.0 7.8 27 461-487 87-119 (173)
446 COG5290 IkappaB kinase complex 88.6 8.9 0.00019 39.9 12.5 124 141-264 111-268 (1243)
447 PF03088 Str_synth: Strictosid 88.4 5.5 0.00012 29.4 8.3 48 436-483 33-81 (89)
448 PRK10115 protease 2; Provision 87.9 40 0.00088 35.8 32.4 235 203-451 128-397 (686)
449 PRK13684 Ycf48-like protein; P 87.8 26 0.00056 33.5 29.1 174 260-446 148-329 (334)
450 KOG3616 Selective LIM binding 87.7 38 0.00083 35.2 17.2 30 144-173 16-45 (1636)
451 PF07569 Hira: TUP1-like enhan 87.0 7.6 0.00017 34.4 10.1 71 209-280 18-103 (219)
452 PF07676 PD40: WD40-like Beta 86.9 3.8 8.2E-05 24.6 5.9 30 416-445 6-38 (39)
453 TIGR03606 non_repeat_PQQ dehyd 86.8 35 0.00076 33.9 20.9 55 325-379 29-90 (454)
454 PF14727 PHTB1_N: PTHB1 N-term 86.8 33 0.00073 33.7 31.5 59 389-449 301-361 (418)
455 KOG2280 Vacuolar assembly/sort 86.8 43 0.00094 34.9 16.0 185 263-456 63-254 (829)
456 PF05935 Arylsulfotrans: Aryls 86.7 38 0.00082 34.2 20.3 116 331-459 153-312 (477)
457 KOG1983 Tomosyn and related SN 85.9 43 0.00093 37.2 17.0 28 144-171 37-64 (993)
458 PF14269 Arylsulfotran_2: Aryl 85.6 9.9 0.00021 35.6 10.6 91 397-487 95-218 (299)
459 PF08728 CRT10: CRT10; InterP 85.6 9.3 0.0002 39.9 11.1 98 390-488 116-245 (717)
460 TIGR03118 PEPCTERM_chp_1 conse 85.2 31 0.00068 31.9 24.7 223 202-428 23-307 (336)
461 PF11715 Nup160: Nucleoporin N 84.4 5.6 0.00012 41.0 9.3 71 211-281 156-257 (547)
462 PF07676 PD40: WD40-like Beta 84.1 3.9 8.5E-05 24.5 5.0 28 459-486 8-38 (39)
463 PLN00033 photosystem II stabil 84.0 45 0.00097 32.7 32.0 145 328-486 241-396 (398)
464 PF11715 Nup160: Nucleoporin N 82.2 6.4 0.00014 40.6 8.7 37 420-456 216-256 (547)
465 KOG1983 Tomosyn and related SN 81.8 84 0.0018 35.0 17.1 31 202-232 36-66 (993)
466 COG3823 Glutamine cyclotransfe 81.2 36 0.00078 29.6 14.3 171 253-436 55-247 (262)
467 TIGR02276 beta_rpt_yvtn 40-res 80.2 11 0.00023 22.8 6.1 38 388-426 4-41 (42)
468 COG5290 IkappaB kinase complex 79.3 70 0.0015 33.8 14.1 31 240-270 110-140 (1243)
469 COG4590 ABC-type uncharacteriz 79.1 18 0.00039 35.2 9.5 155 201-358 220-389 (733)
470 PF07250 Glyoxal_oxid_N: Glyox 77.9 35 0.00077 30.7 10.7 124 330-457 71-206 (243)
471 PF03022 MRJP: Major royal jel 77.1 63 0.0014 30.1 19.8 162 265-436 35-253 (287)
472 COG3823 Glutamine cyclotransfe 77.0 50 0.0011 28.8 14.9 172 153-343 55-247 (262)
473 KOG3616 Selective LIM binding 76.9 29 0.00063 36.1 10.6 66 203-270 16-81 (1636)
474 COG1506 DAP2 Dipeptidyl aminop 76.7 93 0.002 32.7 15.2 159 305-480 43-236 (620)
475 KOG1898 Splicing factor 3b, su 76.3 1.3E+02 0.0027 33.1 22.8 31 142-172 582-618 (1205)
476 PF13449 Phytase-like: Esteras 75.8 74 0.0016 30.2 19.4 142 326-477 20-232 (326)
477 KOG2247 WD40 repeat-containing 75.6 0.22 4.7E-06 48.1 -4.0 140 328-480 37-179 (615)
478 PF08801 Nucleoporin_N: Nup133 75.2 90 0.002 30.9 14.1 28 462-489 192-219 (422)
479 KOG1900 Nuclear pore complex, 75.0 49 0.0011 36.9 12.4 142 343-488 95-271 (1311)
480 smart00564 PQQ beta-propeller 74.5 8.1 0.00018 21.9 4.0 25 432-456 8-32 (33)
481 PF01436 NHL: NHL repeat; Int 74.5 7.9 0.00017 21.3 3.7 25 462-486 4-28 (28)
482 KOG1900 Nuclear pore complex, 74.2 51 0.0011 36.8 12.3 139 301-449 95-273 (1311)
483 PF10214 Rrn6: RNA polymerase 73.5 1.4E+02 0.003 32.3 21.3 28 327-354 147-175 (765)
484 PF05935 Arylsulfotrans: Aryls 72.6 1.1E+02 0.0024 30.9 15.1 150 212-364 114-310 (477)
485 PF14781 BBS2_N: Ciliary BBSom 71.6 51 0.0011 26.5 14.0 118 147-275 3-128 (136)
486 PF02333 Phytase: Phytase; In 71.2 1E+02 0.0022 29.8 20.4 195 153-363 67-299 (381)
487 PF14761 HPS3_N: Hermansky-Pud 71.0 73 0.0016 28.0 14.3 47 214-261 29-78 (215)
488 PF12768 Rax2: Cortical protei 70.3 64 0.0014 29.9 10.7 80 398-477 16-108 (281)
489 PRK13613 lipoprotein LpqB; Pro 70.1 1.4E+02 0.0031 31.1 18.3 156 322-487 358-535 (599)
490 PF01731 Arylesterase: Arylest 69.5 28 0.0006 25.6 6.6 31 419-449 54-85 (86)
491 smart00564 PQQ beta-propeller 68.7 12 0.00027 21.1 3.9 25 390-414 8-32 (33)
492 PF01011 PQQ: PQQ enzyme repea 67.1 14 0.00029 22.1 3.9 28 432-459 2-29 (38)
493 COG1520 FOG: WD40-like repeat 65.7 1.3E+02 0.0029 29.0 23.0 218 254-487 68-303 (370)
494 PF07250 Glyoxal_oxid_N: Glyox 65.7 18 0.00039 32.5 6.0 81 400-480 48-138 (243)
495 PF12768 Rax2: Cortical protei 64.3 1.2E+02 0.0026 28.0 13.5 115 263-378 15-147 (281)
496 TIGR03606 non_repeat_PQQ dehyd 63.3 50 0.0011 32.9 9.0 53 419-471 30-90 (454)
497 PF12341 DUF3639: Protein of u 62.8 21 0.00046 19.6 3.6 25 420-446 3-27 (27)
498 PF01731 Arylesterase: Arylest 61.4 51 0.0011 24.2 6.7 48 440-489 36-84 (86)
499 KOG1898 Splicing factor 3b, su 61.0 2.5E+02 0.0055 31.0 13.8 109 294-402 548-667 (1205)
500 PLN02193 nitrile-specifier pro 60.9 1.9E+02 0.0041 29.2 19.2 94 265-359 194-306 (470)
No 1
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-63 Score=449.32 Aligned_cols=356 Identities=65% Similarity=1.120 Sum_probs=330.2
Q ss_pred eecCCCceeeccccccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeee---cccccCCCC
Q 011224 128 FEIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKD 203 (490)
Q Consensus 128 ~~~~~~~~~~l~~H~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 203 (490)
..||...+..++ |+.+|.+++|+|-.. +|++|+.|.+.++|++......... ...+++.. +......+.
T Consensus 165 ~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~------q~~lrh~~~~~~~s~~~nkd 237 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST------QLVLRHCIREGGKSVPSNKD 237 (524)
T ss_pred ccccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch------hhhhhhhhhhhcccCCccCC
Confidence 458888888888 999999999999765 9999999999999998742111110 01122221 333455688
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
|++++|+.+|.+|++|+.||.++||+..+.+..++..|++||++|+|+..|+||++++.|+++.+||..++++.+.|.+|
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
..+..+++|.++..|++++.|+.|++|.+....|+.+|.||.++|+++.|+|.|.+|+|||.|++++||.+......+.+
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l 397 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL 397 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
++|...|+++.|+|.|....+|+....+++++.|++|++||+..+.+++++..|..+|++|+|||+|+|||+|+.||.|+
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~ 477 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVH 477 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEeeC
Q 011224 444 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
+|+.+++++++.+.+.+.|+.++|+.+|++|.++..|+.++|.|||+
T Consensus 478 iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLRK 524 (524)
T ss_pred eccccchheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence 99999999999999999999999999999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-59 Score=410.05 Aligned_cols=328 Identities=31% Similarity=0.536 Sum_probs=298.3
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
+...+.||..+|-|++|+|+|..|+|||.|.++|+||+.+... +..+++ |..-|.|++|+|||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp-------------~~t~Kg----H~~WVlcvawsPDg 169 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP-------------LFTCKG----HKNWVLCVAWSPDG 169 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc-------------ceeecC----CccEEEEEEECCCc
Confidence 3456889999999999999999999999999999999987543 223333 46789999999999
Q ss_pred CEEEEEeCCCeEEEEECCC--ceeEEecCCCCCEEEEEecC-----CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC
Q 011224 214 TLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 286 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 286 (490)
+.|++|+.||.|++||... .....+.+|+..|++|+|.| ...+|+++|.||+|+|||+..+.++..+..|..+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 9999999999999999653 44568999999999999976 4568999999999999999999999999999999
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEc-----------CCCC-----------------
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-----------PTGS----------------- 338 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-----------~~~~----------------- 338 (490)
+.++.|-....+.+++.|++|++|+...++.+..+.||...|+.++++ |.++
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876 3343
Q ss_pred --------EEEEEeCCCeEEEEecCC-CceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe
Q 011224 339 --------LLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409 (490)
Q Consensus 339 --------~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 409 (490)
.+++|++|+++.+|+... .+++..+.+|...|..+.|+|++. ++|++|+|..|++|+.++|+
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r---------~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR---------YIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc---------EEEEeecccceeeeeCCCcc
Confidence 499999999999999654 457888999999999999999997 89999999999999999999
Q ss_pred EEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 410 ~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.+.++.||-.+|+.++||.|.++|++||.|.++++|++++.++...++++. .|+++.|+|||..+++|+.|+.+++|-
T Consensus 401 ~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 401 FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999999998765 599999999999999999999999983
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-51 Score=360.56 Aligned_cols=289 Identities=31% Similarity=0.569 Sum_probs=258.2
Q ss_pred CCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 132 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 132 ~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
..+.++.++|...|.|++|+|||+.||||+.||+|++||..++..... ...+|.+.|++++|.|
T Consensus 147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~----------------~l~gH~K~It~Lawep 210 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR----------------ALRGHKKWITALAWEP 210 (480)
T ss_pred CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc----------------cccCcccceeEEeecc
Confidence 345688999999999999999999999999999999999888764332 2345688999999975
Q ss_pred -----CCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc
Q 011224 212 -----EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 212 -----~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 285 (490)
..++|++++.||.|+|||+.. .....+.+|+.+|+|++|--+ .+|++||.|++|++|+...+.+.+++..|..
T Consensus 211 ~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHah 289 (480)
T KOG0271|consen 211 LHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAH 289 (480)
T ss_pred cccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccch
Confidence 678999999999999999875 466788999999999999755 4899999999999999999988888888876
Q ss_pred CeEEEEcc-------------CC------------------------ceEEEEcCCCeEEEEEcCC-CcceeEecCCCCC
Q 011224 286 PTLDVDWR-------------NN------------------------VSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGE 327 (490)
Q Consensus 286 ~~~~~~~~-------------~~------------------------~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~ 327 (490)
-++.+... .. .+++++++|.++++|+-.. .+|+..+.||+..
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l 369 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL 369 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh
Confidence 66555432 11 2589999999999998654 4588889999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 328 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 328 v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
|+.+.||||+++||++|.|..|++|+.++++++.+|++|-..|+.++|+.+.+ +|++||.|.++++|++++
T Consensus 370 Vn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR---------LlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 370 VNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR---------LLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc---------EEEEcCCCceEEEEEeee
Confidence 99999999999999999999999999999999999999999999999999986 899999999999999999
Q ss_pred CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 408 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 408 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.++.+.+.||.+.|.++.|+|||+.+++|+.|..+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999994
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.8e-50 Score=356.90 Aligned_cols=282 Identities=26% Similarity=0.480 Sum_probs=257.5
Q ss_pred cccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC--CCEE
Q 011224 139 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLL 216 (490)
Q Consensus 139 ~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~--~~~l 216 (490)
.|-+.+|..+.||+|+..|||||.+|.+++|...+.. .+..+. +|...|.++.|+|. +.-+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------~~~~l~----gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------LLQTLR----GHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------eeEEEe----ccccceeeEEEccCCCccce
Confidence 3567899999999999999999999999999986542 122333 45778999999996 6789
Q ss_pred EEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC
Q 011224 217 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 295 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
+||+.||++++|++++ ..+..+.+|...|..++|||+|++|.|++.|.+.++||++++..
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E------------------- 295 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE------------------- 295 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-------------------
Confidence 9999999999999887 56778999999999999999999999999999999999987642
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
+....||...|.+++|+|||.+++||+.|..-||||+++++++..+.+|..+|+++.|
T Consensus 296 ----------------------lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 296 ----------------------LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF 353 (459)
T ss_pred ----------------------hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeE
Confidence 2234689999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
+|+|. .|||||.|++++|||++..+.++++.+|..-|+.|.|+| .|.+|+|+|.|++++||...++.+++
T Consensus 354 sPNGy---------~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k 424 (459)
T KOG0272|consen 354 SPNGY---------HLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK 424 (459)
T ss_pred CCCce---------EEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch
Confidence 99995 799999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred EEecCC-CEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 455 TYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 455 ~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
++.+|. .|.+++.+|+|..+++++.|+++++|.
T Consensus 425 sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 425 SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999875 599999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.2e-45 Score=311.23 Aligned_cols=285 Identities=26% Similarity=0.455 Sum_probs=256.5
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
..+|+||...|.++.|++|.++|+|+|.||.+.|||..+.... .. ..-.+..|..++|+|.|+
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~----------ha-------ipl~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV----------HA-------IPLPSSWVMTCAYSPSGN 110 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce----------eE-------EecCceeEEEEEECCCCC
Confidence 3789999999999999999999999999999999997654211 00 112256799999999999
Q ss_pred EEEEEeCCCeEEEEECCCc-------eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 215 LLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
++++|+.|+...||++... ....+.+|++.+.+..|.+ ..+|+|+|.|.++.+||+++++....|..|.+.+
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 9999999999999997632 3456899999999999988 4679999999999999999999999999999999
Q ss_pred EEEEccC--CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc
Q 011224 288 LDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 288 ~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 365 (490)
+++++.+ ...|++++.|++.++||++.+..++.|.||...|++|+|+|+|.-|+||++|++.|+||++..+.+..+..
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 9998864 57899999999999999999999999999999999999999999999999999999999999888776653
Q ss_pred --ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 366 --HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 366 --~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
...+|++++|+..|+ +|++|..|.++.+||.-.++.+..+.+|...|.+|..+|||..|+|||.|.+++
T Consensus 270 ~~~~~gitSv~FS~SGR---------lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGR---------LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred CcccCCceeEEEccccc---------EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhee
Confidence 345789999999997 888999999999999999999999999999999999999999999999999999
Q ss_pred EEE
Q 011224 444 IWS 446 (490)
Q Consensus 444 iw~ 446 (490)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-44 Score=304.87 Aligned_cols=289 Identities=27% Similarity=0.473 Sum_probs=247.2
Q ss_pred eeccccccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 136 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
.+|++|++.|++++..+. ...|++++.|.++.+|++..-.... | ...+. ..+|+..|..++.++||+
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~----G----~~~r~----~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKY----G----VPVRR----LTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcccc----C----ceeee----eeccceEecceEEccCCc
Confidence 578999999999999998 4689999999999999987542110 0 11222 334678899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
++++++.|+++++||+.+ .....|.+|+..|.+++|++++.++++||.|++|++||+.....
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck----------------- 139 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK----------------- 139 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-----------------
Confidence 999999999999999876 66678999999999999999999999999999999999754321
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEec--CCCCCeeEEEEcCC--CCEEEEEeCCCeEEEEecCCCceeeeecccccc
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 369 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 369 (490)
.+.. ++.+.|+|+.|+|+ ..+|+++|.|+++++||+++.+..+.+.+|.+.
T Consensus 140 -------------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 140 -------------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY 194 (315)
T ss_pred -------------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc
Confidence 1111 23678999999998 789999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
++.+.+||+|+ +.++|+.||.+.+||++.++.++.+. |...|++++|+|+..+|+.+... .|+|||+.+
T Consensus 195 v~t~~vSpDGs---------lcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~ 263 (315)
T KOG0279|consen 195 VNTVTVSPDGS---------LCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLES 263 (315)
T ss_pred EEEEEECCCCC---------EEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccc
Confidence 99999999997 78999999999999999999998887 77899999999998888776644 599999999
Q ss_pred CeEEEEEecC----------CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 450 GKIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 450 ~~~~~~~~~~----------~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.++..+..+ ....+++|++||..|.+|..|+.|+||.++
T Consensus 264 ~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 8877665321 125789999999999999999999999886
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-42 Score=294.14 Aligned_cols=280 Identities=20% Similarity=0.373 Sum_probs=256.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc---
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--- 274 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--- 274 (490)
+|...|.++.|++|.++++|++.||.+.|||.-. .....+.--..-|...+|+|.|+++++|+.|..+.||++.+.
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~ 132 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE 132 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc
Confidence 4567799999999999999999999999999643 344556666678999999999999999999999999999865
Q ss_pred ---ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEE
Q 011224 275 ---EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAK 350 (490)
Q Consensus 275 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~ 350 (490)
...+.+..|.+-+.+..|.++..+++++.|.+..+||+.+++.+..|.||.+.|.+++++| +++.+++|+-|++.+
T Consensus 133 g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 3456788899999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred EEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC--CCCCEEEEEECC
Q 011224 351 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSP 428 (490)
Q Consensus 351 iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~sp 428 (490)
|||++.+.++++|.+|...|.+++|.|+|. -+++|+.|+++|+||++..+.+..+.. -..+|++++||-
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~---------afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFPSGD---------AFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred eeeccCcceeEeecccccccceEEEccCCC---------eeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 999999999999999999999999999996 689999999999999999888777653 245799999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 429 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.|++|.+|..|.++.+||.-.++.+..+.+|. .|.++..+|||.-|++|++|.+++||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999998888865 599999999999999999999999994
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-41 Score=311.20 Aligned_cols=354 Identities=24% Similarity=0.414 Sum_probs=273.2
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCC----CC---------------------------
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ----NG--------------------------- 183 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~----~~--------------------------- 183 (490)
...+..|...|+...|||.|-|+|||...|.|||||......+.+.. .|
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 45678899999999999999999999999999999975421110000 00
Q ss_pred -----------------CceeEEE------------------------EeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 184 -----------------PLNVLVL------------------------KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 184 -----------------~~~~~~~------------------------~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
.++...+ .+++.....|++-|.|+.|+|||.+|++++.|
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 0000000 11233345688899999999999999999999
Q ss_pred CeEEEEEC-CCceeEEec---CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc---CeEEEEccCC
Q 011224 223 GQARIWST-NGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG---PTLDVDWRNN 295 (490)
Q Consensus 223 g~i~iw~~-~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~ 295 (490)
|++.|||- .++.+..+. +|++.|++|+|+|++.+|+|+|.|++++|||+.+..+++++..... ....+-|. +
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-k 290 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-K 290 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-C
Confidence 99999994 466777776 8999999999999999999999999999999999999988875443 23444566 6
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee-----------eeec
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-----------HDLR 364 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~ 364 (490)
..+++-+.+|+|..++.....+++++.||...|+++..+|++++|++|+.||.|.-|+..++..- ..+.
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~ 370 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMA 370 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEe
Confidence 77888899999999999998899999999999999999999999999999999999998655321 1111
Q ss_pred ccc-ccEEEEEE-------------------------------cCCCC------------------------------CC
Q 011224 365 EHS-KEIYTIRW-------------------------------SPTGS------------------------------GT 382 (490)
Q Consensus 365 ~~~-~~i~~v~~-------------------------------~p~g~------------------------------~~ 382 (490)
.+. +.+.++.| .+++. ..
T Consensus 371 ~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vA 450 (603)
T KOG0318|consen 371 ASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVA 450 (603)
T ss_pred ecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEE
Confidence 111 12222211 11110 00
Q ss_pred CCCCCcEEEEEEECCCcEEEEeCCCCeEE--EEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE-EEEe-c
Q 011224 383 NNPNQQLILASASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYT-G 458 (490)
Q Consensus 383 ~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~-~~~~-~ 458 (490)
.+|. ...++.|+.||.|+||.+..+... ..+..|.++|++|+||||+.|||+|...+.|.+|++.+++.. ..+. +
T Consensus 451 v~~~-~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH 529 (603)
T KOG0318|consen 451 VSPD-GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH 529 (603)
T ss_pred EcCC-CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee
Confidence 0111 125789999999999999865432 345679999999999999999999999999999999988762 2233 3
Q ss_pred CCCEEEEEECCCCCEEEEEECCCcEEEEEeeC
Q 011224 459 NGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 459 ~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
...|++++|+|+..++|+|+.|-+|.||++.+
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 45699999999999999999999999999853
No 9
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.3e-42 Score=301.84 Aligned_cols=333 Identities=23% Similarity=0.379 Sum_probs=286.3
Q ss_pred CCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 132 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 132 ~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
+..+.+|..|+.+|++|+.+|+.++++|||.|....||++.++.. .....+|...|+++.||.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------~~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------AGELTGHKDSVTCCSFSH 116 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------eeEecCCCCceEEEEEcc
Confidence 455678999999999999999999999999999999999987641 122345678999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 212 EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
+|.+|+||+.+|.|+||.... .....+...-..+.-++|||.++.|++|+.||.+.+|.+..+...+.+.+|..++.+-
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 999999999999999999764 4455565566778889999999999999999999999999988889999999999888
Q ss_pred Ecc-CCceEEEEcCCCeEEEEEcCCCcceeEecCCC-CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec----
Q 011224 291 DWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---- 364 (490)
Q Consensus 291 ~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 364 (490)
.|. +..+++++..|++|++|+..+..|+..+.+.. .+..|+.++..+..+++|+.++.+++-+..+++.+...+
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 875 46788999999999999999999988876443 467899999999999999999999999999998887666
Q ss_pred ----cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC
Q 011224 365 ----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 365 ----~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
.+...+.++.+.|..... .+.|+|+-||+|-|||+...++.+.+. |..+|+.+.|-+ ..+|++++.+|
T Consensus 277 ~l~~~~e~~~esve~~~~ss~l------pL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g 348 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKL------PLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANG 348 (399)
T ss_pred cccccchhhhhhhhhccccccc------chhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCc
Confidence 234445566665554321 278999999999999998777665554 889999999999 78999999999
Q ss_pred cEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 441 SMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 441 ~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.|+.||.++|+++.+|.+|. .|++++.+|+++++++++.|++..||++.
T Consensus 349 ~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999875 69999999999999999999999999863
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-44 Score=320.77 Aligned_cols=248 Identities=30% Similarity=0.540 Sum_probs=223.1
Q ss_pred CceeeccccccceeEEEECCC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 133 SDVTILEGHTSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~--~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
..+.+|+||+..|.++.|+|. +..||||+.||++++|++.+...+ ....+|...|..++|+
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-----------------~~l~gH~~RVs~VafH 270 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-----------------QDLEGHLARVSRVAFH 270 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch-----------------hhhhcchhhheeeeec
Confidence 446799999999999999997 568999999999999998764321 1223455779999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 211 GEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
|+|++|+|+++|.+-++||+..+ ......||...|++++|+|+|..++||+.|..-+|||++++.+
T Consensus 271 PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~------------- 337 (459)
T KOG0272|consen 271 PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC------------- 337 (459)
T ss_pred CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-------------
Confidence 99999999999999999998764 3445679999999999999999999999999999999988753
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 369 (490)
+..+.||..+|.+|+|+|+|..|||||.|++++|||++..+.+.++.+|...
T Consensus 338 ----------------------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl 389 (459)
T KOG0272|consen 338 ----------------------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL 389 (459)
T ss_pred ----------------------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence 4467789999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
|..|+|+|... .+|+|++.|++++||..++..++.++.||.+.|.++.++|++++|+|+|.|.+|++|.
T Consensus 390 VS~Vk~~p~~g--------~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 390 VSQVKYSPQEG--------YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhheEecccCC--------eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999432 4899999999999999999999999999999999999999999999999999999995
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-42 Score=301.82 Aligned_cols=299 Identities=30% Similarity=0.511 Sum_probs=264.0
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
.....+.||..+|+.+-|+|+-..+++++.|++|++||..++... ..+ .+|...|.+++|+..
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-------------~~L----rGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-------------RSL----RGHTDSVFDISFDAS 161 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-------------hhh----hccccceeEEEEecC
Confidence 445678899999999999999999999999999999999887532 122 344566999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC--ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 213 GTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
|+++++++.|=.+++|+.+. .....+.+|.-.|.+++|-|.|++++|++.|.+|++|++.++.+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c-------------- 227 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC-------------- 227 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee--------------
Confidence 99999999999999999875 34456789999999999999999999999999999999987754
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccE
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 370 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 370 (490)
+++|.+|...|..++.+.||.++|+|+.|.++++|-+.++.+...++.|..+|
T Consensus 228 ---------------------------v~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 228 ---------------------------VKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred ---------------------------EEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce
Confidence 34667788889999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCC------CCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 011224 371 YTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 444 (490)
Q Consensus 371 ~~v~~~p~g~~~~------~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~i 444 (490)
.+++|.|...... +.++-.++.+++.|++||+||+.++.+++++.+|...|..++|+|.|+||+++.+|+++++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV 360 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence 9999998754211 1123348999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCeEEEEEecCCC-EEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 445 WSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 445 w~~~~~~~~~~~~~~~~-v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
||+.++++++++..+.. +++++|+.+..++++|+.|-+++||.-|
T Consensus 361 wdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 361 WDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred EEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence 99999999999887654 8999999999999999999999999643
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8e-43 Score=316.88 Aligned_cols=297 Identities=25% Similarity=0.429 Sum_probs=256.0
Q ss_pred CcceecCCCceeeccccccceeEEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCC
Q 011224 125 SESFEIPNSDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 203 (490)
Q Consensus 125 ~~~~~~~~~~~~~l~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (490)
+..+.+|...++++.||+.+|+++.|.| .+++|++||.|+.|+||++.+.. .+...+.+|..+
T Consensus 197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~ 260 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKP 260 (503)
T ss_pred cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhh
Confidence 5678899999999999999999999999 79999999999999999987621 222344567899
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeee
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
|.+++|+.+|..|+|+++|+.+++||++......-......++++.|+|++ +.|++|+.|+.|+.||++++++++.+..
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 999999999999999999999999999876544333344567999999999 8899999999999999999999999999
Q ss_pred eccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce-
Q 011224 283 HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY- 359 (490)
Q Consensus 283 ~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 359 (490)
|.+++..+.|. .+.+|+++++|+++++|+.+.+.+++.... +.....|+..+|++++++.-+.|+.|.||.+...-.
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 99999999985 578899999999999999999988765443 345688999999999999999999999998643211
Q ss_pred --eeeecccc--ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEE
Q 011224 360 --VHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLA 434 (490)
Q Consensus 360 --~~~~~~~~--~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~ 434 (490)
...+.+|. +.-..+.|||+|. +|++|+.||.+.+||.++.+.+..+++|..++..+.|+|.. ..+|
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~---------~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGR---------TLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCC---------eEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 23345554 3345678999997 89999999999999999999999999999999999999975 6899
Q ss_pred EEeCCCcEEEEE
Q 011224 435 SGSLDKSMHIWS 446 (490)
Q Consensus 435 s~s~dg~i~iw~ 446 (490)
|||.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=321.27 Aligned_cols=336 Identities=28% Similarity=0.500 Sum_probs=273.6
Q ss_pred eecCC-Cceeeccc-cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE
Q 011224 128 FEIPN-SDVTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 205 (490)
Q Consensus 128 ~~~~~-~~~~~l~~-H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 205 (490)
+.+|. ..+..++. |++||..++|+|.+.+|+|||.|+.+++||+..+- +...+ .+|.+.|.
T Consensus 89 ~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------------~th~f----kG~gGvVs 151 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------------CTHSF----KGHGGVVS 151 (775)
T ss_pred EEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------------EEEEe----cCCCceEE
Confidence 33443 33556777 99999999999999999999999999999987542 23333 34578899
Q ss_pred EEEEcCCCC--EEEEEeCCCeEEEEECCCce--eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe--
Q 011224 206 TLDWNGEGT--LLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-- 279 (490)
Q Consensus 206 ~~~~s~~~~--~l~sg~~dg~i~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-- 279 (490)
++.|+|+-+ .|++|+.|+++++||..... ...+..|.+.|+++.|.+++..+++++.|+.+.+||+..-+....
T Consensus 152 sl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp 231 (775)
T KOG0319|consen 152 SLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP 231 (775)
T ss_pred EEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec
Confidence 999999765 48999999999999987433 456788999999999999999999999999999998742110000
Q ss_pred --------------------e-----------------------------------------------------------
Q 011224 280 --------------------F----------------------------------------------------------- 280 (490)
Q Consensus 280 --------------------~----------------------------------------------------------- 280 (490)
+
T Consensus 232 ~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~ 311 (775)
T KOG0319|consen 232 LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED 311 (775)
T ss_pred hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence 0
Q ss_pred --------------------------------------------------eeeccCeEEEE-ccCCceEEEEcCCCeEEE
Q 011224 281 --------------------------------------------------EFHSGPTLDVD-WRNNVSFATSSTDNMIYV 309 (490)
Q Consensus 281 --------------------------------------------------~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~ 309 (490)
.+|...+++++ |..+..+++++.|+++++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 00111112222 222234788899999999
Q ss_pred EEcCCC----cceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCce---------eeeeccccccEEEEEE
Q 011224 310 CKIGEN----RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY---------VHDLREHSKEIYTIRW 375 (490)
Q Consensus 310 ~~~~~~----~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~v~~ 375 (490)
|.+..+ .++....||++.|.+++++..+ .+|+++|.|+++++|++...+. ....+.|...|.+++.
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 988443 3456678999999999997655 5799999999999999876221 1234679999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 455 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~ 455 (490)
+|+.. ++||||.|.+.+||++.....+.++.||+..|+++.|+|..+.|||+|.|++|+||.+.+..++++
T Consensus 472 a~ndk---------LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT 542 (775)
T KOG0319|consen 472 APNDK---------LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKT 542 (775)
T ss_pred cCCCc---------eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeee
Confidence 99876 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 456 YTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 456 ~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.||. .|..++|-.+|+.|++|+.||-|++||++
T Consensus 543 ~eGH~~aVlra~F~~~~~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 543 FEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK 577 (775)
T ss_pred ecCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence 99875 59999999999999999999999999986
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-42 Score=330.09 Aligned_cols=311 Identities=27% Similarity=0.498 Sum_probs=259.1
Q ss_pred cCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 130 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 130 ~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
+|.-+..++..-...++|+.|++|+++||-|-.|..|++|.+...+. +.++. .+
T Consensus 366 lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl--------------~~lk~-----------~~- 419 (707)
T KOG0263|consen 366 LPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL--------------KKLKD-----------AS- 419 (707)
T ss_pred CCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhh--------------ccccc-----------hh-
Confidence 45555556655567899999999999999999999999999864220 11111 00
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 210 NGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 210 s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
+...+=+++.|-.+.+-|... ....++.+|.+||++..|+|+.++|++||.|+++|+|.+.+..+.-.+.+|..||.
T Consensus 420 --~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVw 497 (707)
T KOG0263|consen 420 --DLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVW 497 (707)
T ss_pred --hhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCccee
Confidence 011122333343455555443 34456899999999999999999999999999999999999999999999999999
Q ss_pred EEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 289 DVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 289 ~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
.+.|.+ ...|++++.|++.++|......|.+.|.||.+.|.|++|||+..|++|||.|.++|+||+.++..++.|.+|.
T Consensus 498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~ 577 (707)
T KOG0263|consen 498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK 577 (707)
T ss_pred eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC
Confidence 999965 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
++|.+++|+|.|. +|++|+.||.|++||+.+++.+..+.+|.+.|++|.||.+|..||+||.|++|++||+
T Consensus 578 ~~V~al~~Sp~Gr---------~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 578 GPVTALAFSPCGR---------YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred CceEEEEEcCCCc---------eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999997 8999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCe------------------------EEEEEec-CCCEEEEEECCCCCEEEEE
Q 011224 448 KEGK------------------------IVKTYTG-NGGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 448 ~~~~------------------------~~~~~~~-~~~v~~~~~~~~g~~la~~ 477 (490)
.+-. ++.+|.. +..|..+.|......|++|
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 649 TKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred hhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 6421 2333332 3457778887776555554
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=275.29 Aligned_cols=289 Identities=27% Similarity=0.515 Sum_probs=236.9
Q ss_pred eeeccccccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
++.+.+|++.|-.++|+|- |..|||+|.|..||+|+...+.. +..+... ...|...|..++|+|.|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vl--d~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-----------WTCKTVL--DDGHKRSVRSVAWSPHG 73 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-----------EEEEEec--cccchheeeeeeecCCC
Confidence 4678899999999999998 99999999999999999764221 2222221 23577899999999999
Q ss_pred CEEEEEeCCCeEEEEECCC---ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 214 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
++|++|+.|.++.||.... +...++.+|.+.|.+++|+++|++|++|+.|++|.||.+....-
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE-------------- 139 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE-------------- 139 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc--------------
Confidence 9999999999999997653 34568899999999999999999999999999999998764321
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC---CCceeeeecccc
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---QDKYVHDLREHS 367 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~ 367 (490)
-..+..+.+|...|..+.|||...+|+++|.|.+|++|+-. ...+++++.+|.
T Consensus 140 ------------------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 140 ------------------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred ------------------------EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 11234678899999999999999999999999999999865 346788999999
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
..|.+++|+|.|. -|++++.|++|+||...+.-. .-|+.+++.++|. ...|||++.|+.|++|.-
T Consensus 196 ~TVW~~~F~~~G~---------rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 196 NTVWSLAFDNIGS---------RLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ceEEEEEecCCCc---------eEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999985 689999999999998652211 2377899999998 457999999999999987
Q ss_pred CCC------eEEEE--EecCCCEEEEEECCC-CCEEEEEECCCcEEEEEee
Q 011224 448 KEG------KIVKT--YTGNGGIFEVCWNKE-GDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 448 ~~~------~~~~~--~~~~~~v~~~~~~~~-g~~la~~~~d~~v~v~~~~ 489 (490)
... +++.. ..+...|++++|+|. .++|++|+.||.|++|.+.
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 643 11111 122346999999996 6899999999999999874
No 16
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.5e-41 Score=293.36 Aligned_cols=290 Identities=27% Similarity=0.472 Sum_probs=254.1
Q ss_pred ecCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEE
Q 011224 129 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 208 (490)
Q Consensus 129 ~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 208 (490)
..|.+..+++.||.+.|.|+++.|...+++||+.|++|+|||+.+++. +....+|-..|..++
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------kltltGhi~~vr~va 200 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------KLTLTGHIETVRGVA 200 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------EEeecchhheeeeee
Confidence 345556678999999999999999999999999999999999998742 112234567799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
+|+-..|+++++.|++|+.||++. +.+..+.+|-..|++|+.+|.-..|++|+.|.++|+||+++..
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~------------ 268 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA------------ 268 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc------------
Confidence 999999999999999999999875 4556788999999999999999999999999999999998753
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
.+..+.||..+|..+.+.|....++|||.|++|++||++.++...++..|.
T Consensus 269 -----------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hk 319 (460)
T KOG0285|consen 269 -----------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHK 319 (460)
T ss_pred -----------------------------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccc
Confidence 345688999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
..+.+++.+|... .+|+++.| .|+-|++..|..+..+.+|...|++++...|| ++++|+..|.|.+||.
T Consensus 320 ksvral~lhP~e~---------~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 320 KSVRALCLHPKEN---------LFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred ceeeEEecCCchh---------hhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence 9999999999764 67888776 69999999999999999999999999998775 6789999999999999
Q ss_pred CCCeEEEEE---------ecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 448 KEGKIVKTY---------TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 448 ~~~~~~~~~---------~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
++|.-.+.. ....+|++.+|...|..|++|..|++|.+|.
T Consensus 389 ksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 389 KSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred CcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 987543322 2245789999999999999999999999994
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-39 Score=307.12 Aligned_cols=332 Identities=23% Similarity=0.419 Sum_probs=279.9
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...++.||...|.++.|+.|.++|++||.|.++|||.+...+.. ......+|..+|-.+-|..+.
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------~~~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------FTYALNGHKDYVVACFFGANS 201 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------ceEeccCCCcceEEEEeccCc
Confidence 34678899999999999999999999999999999998654321 111234678889999999999
Q ss_pred CEEEEEeCCCeEEEEECC------------------------Cce-----------eEEecCCCCCEEEEEecCCCCEEE
Q 011224 214 TLLATGSYDGQARIWSTN------------------------GDL-----------KCTLSKHKGPIFSLKWNKKGDYLL 258 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~------------------------~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~ 258 (490)
..+++-+.||.+.+|..+ ++. +.-+......|++.+||+..+.|+
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 999999999999999644 111 011222336799999999999999
Q ss_pred EEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC
Q 011224 259 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 336 (490)
Q Consensus 259 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 336 (490)
+|-..|...+|.+....+++.+.....++..+.|. .+...+.++.=|.+.+|++....-+....||...++|++++||
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD 361 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD 361 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence 99999999999999999999888888888888886 3334444555689999999998888888899999999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC----------
Q 011224 337 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---------- 406 (490)
Q Consensus 337 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~---------- 406 (490)
|+++|||++||+|+|||..++-|+.+|..|...|+.+.|+..+. .|++.|.||+||.||+.
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~---------~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN---------VLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC---------EEEEeecCCeEEeeeecccceeeeecC
Confidence 99999999999999999999999999999999999999998886 56777777777777653
Q ss_pred ----------------------------------CCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC-e
Q 011224 407 ----------------------------------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-K 451 (490)
Q Consensus 407 ----------------------------------~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~-~ 451 (490)
+|+.+-.+.||.+||.+|+|+|+|..||+||+|.+|++|++-.. .
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 34455556799999999999999999999999999999998653 3
Q ss_pred EEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 452 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 452 ~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+.++.....+++++|+|+|+.||++..||.|.+||..
T Consensus 513 ~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 513 TVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 46677777789999999999999999999999999974
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.5e-42 Score=304.53 Aligned_cols=278 Identities=25% Similarity=0.481 Sum_probs=249.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
..+|..+.|.|+|+.|++|+..|...+|+...- ....++.|..+|.++.|++++.+++||+.+|.|++|++.-......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 457999999999999999999999999997432 2335678999999999999999999999999999999876555444
Q ss_pred eeeeccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q 011224 280 FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 280 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~ 358 (490)
...|...|.++.|. ++..|+++++|++|++|+....+.-..+.||.-.|.|++|||...+||+||.|..|++||.+++.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc
Confidence 55566889999885 67889999999999999999988888899999999999999999999999999999999999999
Q ss_pred eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCC-CCEEEEEe
Q 011224 359 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-GEYLASGS 437 (490)
Q Consensus 359 ~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd-g~~l~s~s 437 (490)
++.++..|...|..+.|+|++. +|+++|.|..++++|+++.+.++++.+|+..|+++.|+|- ..+|++|+
T Consensus 256 cl~tlh~HKntVl~~~f~~n~N---------~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 256 CLATLHGHKNTVLAVKFNPNGN---------WLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred hhhhhhhccceEEEEEEcCCCC---------eeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 9999999999999999999985 8999999999999999999999999999999999999995 46888999
Q ss_pred CCCcEEEEEcCCCeEEEEE--ecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 438 LDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 438 ~dg~i~iw~~~~~~~~~~~--~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.||.|..|.+...+.+..+ .+.+.|++++|+|-|-+||+|+.|.++++|.
T Consensus 327 ~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 327 SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999854444433 3356799999999999999999999999995
No 19
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=271.41 Aligned_cols=285 Identities=26% Similarity=0.450 Sum_probs=242.4
Q ss_pred CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Q 011224 155 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-- 232 (490)
Q Consensus 155 ~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-- 232 (490)
-+|+|+|.|.+||+|...+|.+..+.+ . ....|..+...|++++|+.++. ..||+||++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-------------h----~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-------------H----PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-------------c----CccceeeEEEcCCcchhhhccC-CeeEEEEccCCC
Confidence 479999999999999998886533221 1 2457999999999999998876 6899999864
Q ss_pred -ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc-CCceEEEEcCCCeEEEE
Q 011224 233 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVC 310 (490)
Q Consensus 233 -~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~ 310 (490)
..+.++.+|++.|+++.|..+|+++++||.||++||||++...+.+.|.. ..++.++..+ +...++++..+|.|++|
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dqsg~irvW 151 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQSGNIRVW 151 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecCCCcEEEE
Confidence 36789999999999999999999999999999999999999776666654 4788888775 45678999999999999
Q ss_pred EcCCCcceeEecC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC------ceeeeeccccccEEEEEEcCCCCCCC
Q 011224 311 KIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------KYVHDLREHSKEIYTIRWSPTGSGTN 383 (490)
Q Consensus 311 ~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~i~~v~~~p~g~~~~ 383 (490)
|+........+.. -...|.++...|||.+++.+..-|...+|++-.. .++..++.|.+-+..+.+||++.
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k--- 228 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK--- 228 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc---
Confidence 9998865544432 3457999999999999999999999999998654 34567889999999999999997
Q ss_pred CCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC-
Q 011224 384 NPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG- 461 (490)
Q Consensus 384 ~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~- 461 (490)
+||++|.|.+++||+.++. +.-..+.+|...+++.+||.||.||+|||.|+++++|++..++.+..+.++..
T Consensus 229 ------~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 229 ------YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred ------EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 8999999999999999887 55567899999999999999999999999999999999999999999987643
Q ss_pred EEEEEE
Q 011224 462 IFEVCW 467 (490)
Q Consensus 462 v~~~~~ 467 (490)
..+++.
T Consensus 303 ~vc~~l 308 (311)
T KOG0315|consen 303 AVCVAL 308 (311)
T ss_pred cEEEEe
Confidence 444443
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.8e-38 Score=286.29 Aligned_cols=331 Identities=22% Similarity=0.340 Sum_probs=261.0
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
..+++.|..-|+|++|||||.+++|+|.||+|.+||=.++... ..+. ....|.+.|.+++|+||++
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-------------g~l~-~~~aHkGsIfalsWsPDs~ 248 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-------------GELE-DSDAHKGSIFALSWSPDST 248 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-------------EEec-CCCCccccEEEEEECCCCc
Confidence 3567889999999999999999999999999999996665421 1111 1346789999999999999
Q ss_pred EEEEEeCCCeEEEEECCCc--------------------------------------------eeEEecCCCCCEEEEEe
Q 011224 215 LLATGSYDGQARIWSTNGD--------------------------------------------LKCTLSKHKGPIFSLKW 250 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~--------------------------------------------~~~~~~~h~~~V~~l~~ 250 (490)
.|++++.|.+++|||.... ....+.+|..+|++|..
T Consensus 249 ~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 249 QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV 328 (603)
T ss_pred eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE
Confidence 9999999999999985311 11234689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEccCcceeEee-eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCC------------cc
Q 011224 251 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN------------RP 317 (490)
Q Consensus 251 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~------------~~ 317 (490)
+|++.+|++|+.||.|.-|+..++..-... ..|...+..+.-.....+++++.|.++++.++..+ +|
T Consensus 329 ~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP 408 (603)
T KOG0318|consen 329 SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQP 408 (603)
T ss_pred cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCc
Confidence 999999999999999999999887644333 45666677776666667777777777777755321 01
Q ss_pred -------------------eeEecCCC--------CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee--eeeccccc
Q 011224 318 -------------------IKTFAGHQ--------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREHSK 368 (490)
Q Consensus 318 -------------------~~~~~~h~--------~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~ 368 (490)
+..+..+. -...+++++|++..++.|+.|+.|+||.+...... ..+..|..
T Consensus 409 ~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a 488 (603)
T KOG0318|consen 409 KGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRA 488 (603)
T ss_pred eeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccC
Confidence 11122222 23578999999999999999999999999876543 23557899
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE-EeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
++++++|+|++. |||+|...+.+.+||+.+.+... .+.-|...|++|+|||+..++||||.|-.|.||++
T Consensus 489 ~iT~vaySpd~~---------yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 489 AITDVAYSPDGA---------YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred CceEEEECCCCc---------EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 999999999997 89999999999999999877632 23448999999999999999999999999999999
Q ss_pred CCCeEEEEE--ecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 448 KEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 448 ~~~~~~~~~--~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
..-...-.+ .+..+|+.+.|-. .+.|++.+.|.+|++|++-
T Consensus 560 ~kP~~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 560 KKPAKHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cChhhheEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 864322222 2334599999954 4688899999999999973
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=296.55 Aligned_cols=282 Identities=26% Similarity=0.478 Sum_probs=252.0
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
+-+|+.+.|.|+|+.|+||+..|...+|+.... .+......|..+|.++.|+++|.+++||+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 457999999999999999999999999985321 122233457889999999999999999999
Q ss_pred CCeEEEEECCCceeEEecCCC-CCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC-ceEE
Q 011224 222 DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFA 299 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 299 (490)
+|.|++|+.+-..+..+.+|. .+|.+++|+|+...|++||.|++|+|||....+....+.+|.-.+.+++|++. ..++
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 999999998876666666665 89999999999999999999999999999888777788999999999999865 4567
Q ss_pred EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCC
Q 011224 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379 (490)
Q Consensus 300 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g 379 (490)
+++.|+.|.+||.+++.++.++.+|...|..+.|+|++++|+|+|.|..++++|+++.+.+..+++|...++++.|+|-.
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 380 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
. .+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|=|.+|++|+.|.++++|...
T Consensus 319 ~--------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 E--------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred c--------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 4 38999999999999999866666554 4699999999999999999999999999999753
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-39 Score=273.84 Aligned_cols=246 Identities=29% Similarity=0.502 Sum_probs=210.2
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
.+..|+||...|..++.++||++.+|||.|+++++||+.+++. .+.+. +|...|++++|++|.
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f~----GH~~dVlsva~s~dn 117 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-------------TRRFV----GHTKDVLSVAFSTDN 117 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE-------------EEEEE----ecCCceEEEEecCCC
Confidence 3568999999999999999999999999999999999987642 22333 457889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEecCC--CCCEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 214 TLLATGSYDGQARIWSTNGDLKCTLSKH--KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~~~~~~~~h--~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
+.++||+.|++|++|++-+.+..++..+ .+-|.+++|+|+ ..+|+++|.|++|++||+++.+..
T Consensus 118 ~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~------------ 185 (315)
T KOG0279|consen 118 RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR------------ 185 (315)
T ss_pred ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh------------
Confidence 9999999999999999999888777655 688999999998 679999999999999999875432
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 369 (490)
..|.||++.++.+++||||.++++|+.||.+.+||++.++.+..+ .+...
T Consensus 186 -----------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~ 235 (315)
T KOG0279|consen 186 -----------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDI 235 (315)
T ss_pred -----------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCe
Confidence 356789999999999999999999999999999999999987776 46779
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC----C-----CCCEEEEEECCCCCEEEEEeCCC
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG----H-----REPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~l~~spdg~~l~s~s~dg 440 (490)
|.+++|+|+-. .|+ ...+-.|+|||+.++.++.+++. . .....+++||+||+.|++|-.|+
T Consensus 236 v~sl~fspnry---------wL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 236 VNSLCFSPNRY---------WLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred EeeEEecCCce---------eEe-eccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 99999999852 444 44456699999999988776542 1 22357789999999999999999
Q ss_pred cEEEEEcC
Q 011224 441 SMHIWSLK 448 (490)
Q Consensus 441 ~i~iw~~~ 448 (490)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999875
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.4e-39 Score=305.64 Aligned_cols=344 Identities=22% Similarity=0.339 Sum_probs=286.6
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCC-------------------------C--C---
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ-------------------------N--G--- 183 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~-------------------------~--~--- 183 (490)
+.+++..|.+.|++++|++|+..++++|-|..+.|||+.+.+...... . +
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~ 263 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQ 263 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEE
Confidence 467889999999999999999999999999999999985422111000 0 0
Q ss_pred ---------------C----c-------------------eeEEE----EeeecccccCCCCeEEEEE-cCCCCEEEEEe
Q 011224 184 ---------------P----L-------------------NVLVL----KHVKGRTNEKSKDVTTLDW-NGEGTLLATGS 220 (490)
Q Consensus 184 ---------------~----~-------------------~~~~~----~~~~~~~~~~~~~V~~~~~-s~~~~~l~sg~ 220 (490)
+ + +.... -....+..+.+..|.+|+| .|+.++|+.++
T Consensus 264 ~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVAT 343 (775)
T KOG0319|consen 264 YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVAT 343 (775)
T ss_pred EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEe
Confidence 0 0 00000 0011223345667888876 46789999999
Q ss_pred CCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc----ceeEeeeeeccCeEEEEcc--C
Q 011224 221 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWR--N 294 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~--~ 294 (490)
..+.+|+++..+.....+.+|+..|.++....+|..|+|||.|+++++|-++.+ .++....+|...+.++... .
T Consensus 344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence 999999999888777789999999999996667789999999999999977433 2455667888888887774 3
Q ss_pred CceEEEEcCCCeEEEEEcCCCcc-----ee----EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc
Q 011224 295 NVSFATSSTDNMIYVCKIGENRP-----IK----TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~-----~~----~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 365 (490)
...|++++.|.++.+|++...++ +. +...|...|+||+++|+.++|||||.|.+.+||++.......++.+
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG 503 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG 503 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC
Confidence 35688999999999999976221 11 2346899999999999999999999999999999999999999999
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 445 (490)
|...+.++.|+|... +|+|+|.|++|+||.+.+..++.++.||...|..+.|-.+|+.|+||+.||.|++|
T Consensus 504 H~RGvw~V~Fs~~dq---------~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlW 574 (775)
T KOG0319|consen 504 HTRGVWCVSFSKNDQ---------LLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLW 574 (775)
T ss_pred CccceEEEEeccccc---------eeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEE
Confidence 999999999999875 79999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 446 SLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 446 ~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+++++.++.++..| ..|++++-+|.+..+++|+.|+.|.+|
T Consensus 575 nikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 575 NIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred eccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 99999999999765 569999999999999999999999999
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=294.90 Aligned_cols=322 Identities=24% Similarity=0.453 Sum_probs=275.3
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
-...|+|++||+.-.+||+|=..|...+|.+.+... +..+. ....+|..++|+..|.+++.|+
T Consensus 264 ~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-------------ih~LS----is~~~I~t~~~N~tGDWiA~g~ 326 (893)
T KOG0291|consen 264 NSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-------------IHSLS----ISDQKILTVSFNSTGDWIAFGC 326 (893)
T ss_pred cccceeeeeccCCceEEEEEecCCeeEEEecCCceE-------------EEEee----cccceeeEEEecccCCEEEEcC
Confidence 347899999999999999999999999999875421 11111 1135799999999999999987
Q ss_pred CC-CeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc-CCce
Q 011224 221 YD-GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVS 297 (490)
Q Consensus 221 ~d-g~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 297 (490)
.. |++.||+...+ -+...++|-..+.+++++|+|.++++|+.||.|+|||.+.+-|..+|..|...+..+.|. .+..
T Consensus 327 ~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCE
Confidence 65 89999997654 345678999999999999999999999999999999999999999999999999999996 4566
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCC-CCeeEEEEcCCCCEEEEEeCCC-eEEEEecCCCceeeeeccccccEEEEEE
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
+++++.||+|+.||+...+..++|.... -...|++..|.|.++..|+.|. .|.+|++.+|+.+-.+.+|.++|.+++|
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 7788999999999999888888887543 3578999999999999998876 5999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
+|.+. .|+|||+|.+||+||+-... .+.++. +...+++++|+|+|+-||+++.||.|.+||...+..+.
T Consensus 487 ~~~~~---------~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~ 556 (893)
T KOG0291|consen 487 SPDGS---------LLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVG 556 (893)
T ss_pred ccccC---------eEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeec
Confidence 99997 79999999999999986543 334444 66679999999999999999999999999998776664
Q ss_pred EEecC---------------------CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 455 TYTGN---------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 455 ~~~~~---------------------~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++.+. ...+.+++++||+.+++|+....||+|+++
T Consensus 557 ~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 557 SIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred cccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECc
Confidence 44321 236789999999999999999999999985
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.8e-39 Score=310.71 Aligned_cols=271 Identities=27% Similarity=0.475 Sum_probs=240.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
...|+|..|++|+.+||.|-.|..|++|.........+.. ..+- ..+=+.+.|-.+.+-|........++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~-------~~~l---~~~d~~sad~~~~~~D~~~~~~~~~L 447 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD-------ASDL---SNIDTESADVDVDMLDDDSSGTSRTL 447 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccc-------hhhh---ccccccccchhhhhccccCCceeEEe
Confidence 3569999999999999999999999999987543322221 1111 12334555656778888877778889
Q ss_pred eeeccCeEEEEccCCce-EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 281 EFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
.+|.+||....|.+... +++++.|.++++|.+.+...+..+.||..+|+.+.|+|-|-+|||+|.|++.++|......+
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCc
Confidence 99999999999976654 56888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 360 ~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
.+.+.+|...+.|+.|+|+.. |+++||.|.+||+||+.+|..+..+.||.++|++|+|||+|++||+|+.|
T Consensus 528 lRifaghlsDV~cv~FHPNs~---------Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSN---------YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred hhhhcccccccceEEECCccc---------ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEeeC
Q 011224 440 KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
|.|++||+.+|+++..+.++. .|+++.|+.+|+.||+|+.|.+|.|||+.+
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999988887665 499999999999999999999999999863
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.5e-38 Score=268.86 Aligned_cols=287 Identities=26% Similarity=0.436 Sum_probs=243.4
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
++..+.||++.|+.+.|+|+|..|||||.|..|.+|++..-..+ ... ..+|+++|..+.|..|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN---------~~~-------lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN---------FWV-------LKGHSGAVMELHGMRDG 102 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc---------eee-------eccccceeEeeeeccCC
Confidence 35678899999999999999999999999999999997643321 112 22678999999999999
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCE-EEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 214 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+.+++++.|.+++.||.+. +....+.+|.+-|.++.-+.-|.. +.|++.|+++++||+++.+.++++.. ..++.++.
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 9999999999999999864 556678899999999885555554 56889999999999998887776632 33466777
Q ss_pred ccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC----ceeeeeccc
Q 011224 292 WRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD----KYVHDLREH 366 (490)
Q Consensus 292 ~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~ 366 (490)
|.+ .....+++-|+.|.+|+++.+....++.||...|+.+..+|+|.++.+-+.|.++++||++.. +++..+.+|
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 854 456788999999999999999999999999999999999999999999999999999998743 445555554
Q ss_pred c----ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 011224 367 S----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 367 ~----~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
. .....++|+|++. .+..|+.|..+++||......++.+.||.+.|++++|+|...+|.+++.|++|
T Consensus 262 ~hnfeknlL~cswsp~~~---------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGT---------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred hhhhhhhcceeeccCCCC---------ccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 3 3346779999986 67889999999999999989999999999999999999999999999999999
Q ss_pred EEEE
Q 011224 443 HIWS 446 (490)
Q Consensus 443 ~iw~ 446 (490)
.+=.
T Consensus 333 ~lge 336 (338)
T KOG0265|consen 333 YLGE 336 (338)
T ss_pred Eeec
Confidence 8743
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-37 Score=266.69 Aligned_cols=280 Identities=24% Similarity=0.410 Sum_probs=247.8
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCce--eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc
Q 011224 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274 (490)
Q Consensus 197 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 274 (490)
..+|.+.|..+.|+|+|.+|+|||.|..|.+|+..+.. ...+.+|.++|..+.|.++++.+++++.|++|+.||++++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence 34567889999999999999999999999999977643 4578899999999999999999999999999999999999
Q ss_pred ceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 275 EWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iw 352 (490)
+....+..|..-+..+... +...+.++++|+++++||++...+++++. ....++++.|..++..+.+|+-|+.|++|
T Consensus 123 ~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvW 201 (338)
T KOG0265|consen 123 KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVW 201 (338)
T ss_pred eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeee
Confidence 9999999999988888753 34456788999999999999888887764 34579999999999999999999999999
Q ss_pred ecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC----CeEEEEeeCCCC----CEEEE
Q 011224 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----GKLLYSLNGHRE----PVYSL 424 (490)
Q Consensus 353 d~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~----~~~~~~~~~h~~----~v~~l 424 (490)
|++.....+.+.+|..+|+.+..+|.|. ++.+-+.|.++++||++- .+++..+.+|.. .....
T Consensus 202 d~r~~d~~~~lsGh~DtIt~lsls~~gs---------~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c 272 (338)
T KOG0265|consen 202 DLRKNDGLYTLSGHADTITGLSLSRYGS---------FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC 272 (338)
T ss_pred ccccCcceEEeecccCceeeEEeccCCC---------ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee
Confidence 9999999999999999999999999997 788999999999999873 345666766532 34567
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 425 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 425 ~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+|||+++++.+|+.|..+++||.....++..++++. .|+.++|+|.-.+|.+|+.|++|.+=
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 999999999999999999999999888888888865 59999999999999999999999763
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-37 Score=304.57 Aligned_cols=289 Identities=28% Similarity=0.532 Sum_probs=249.1
Q ss_pred eeecccc-ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGH-TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H-~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
..++.+| ...|.++.|+|+|++|++++.|+.+++|+...... .......+|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECCCC
Confidence 4455454 88999999999999999999999999999854431 0011124567789999999999
Q ss_pred CEEEEEeCCCeEEEEEC-CC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 214 TLLATGSYDGQARIWST-NG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~-~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+++++|+.|++|+||+. .. ....++.+|...|++++|+|+++.+++|+.|++|+|||++++++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~--------------- 280 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC--------------- 280 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE---------------
Confidence 99999999999999998 33 46678999999999999999999999999999999999987653
Q ss_pred ccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc--eeeeecccccc
Q 011224 292 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKE 369 (490)
Q Consensus 292 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~ 369 (490)
+..+.+|.+.|++++|++++++|++++.|+.|+|||+.++. ++..+..+...
T Consensus 281 --------------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~ 334 (456)
T KOG0266|consen 281 --------------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS 334 (456)
T ss_pred --------------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC
Confidence 34567899999999999999999999999999999999998 56666665544
Q ss_pred --EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCC---EEEEEECCCCCEEEEEeCCCcEEE
Q 011224 370 --IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP---VYSLAFSPTGEYLASGSLDKSMHI 444 (490)
Q Consensus 370 --i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~---v~~l~~spdg~~l~s~s~dg~i~i 444 (490)
++.++|+|++. ++++++.|+.+++||+..+..+..+.+|... +.+..+++.+.++++|+.|+.|++
T Consensus 335 ~~~~~~~fsp~~~---------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~ 405 (456)
T KOG0266|consen 335 APVTSVQFSPNGK---------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYV 405 (456)
T ss_pred CceeEEEECCCCc---------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEE
Confidence 99999999986 8999999999999999999999999998774 445566789999999999999999
Q ss_pred EEcCCCeEEEEEecC--CCEEEEEECCCCCEEEEEE--CCCcEEEEEe
Q 011224 445 WSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF--ANHTVCVLDF 488 (490)
Q Consensus 445 w~~~~~~~~~~~~~~--~~v~~~~~~~~g~~la~~~--~d~~v~v~~~ 488 (490)
|++.++..+..+.++ ..+..++|+|..+++++++ .|+.+.+|--
T Consensus 406 ~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 406 WDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred EeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 999998888888777 5689999999999999987 6888999854
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.5e-36 Score=319.92 Aligned_cols=289 Identities=21% Similarity=0.413 Sum_probs=232.3
Q ss_pred ccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCCEE
Q 011224 138 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLL 216 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l 216 (490)
+.+|...|++++|+|+|++|||||.|+.|+||++............+ .... .+...|.+++|++ ++.+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~-----~~~~-----~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP-----VVEL-----ASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc-----eEEe-----cccCceeeEEeccCCCCEE
Confidence 44599999999999999999999999999999975421110000000 0011 1235689999987 57899
Q ss_pred EEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 217 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
++++.||+|+|||... .....+.+|.+.|++++|+| ++.+|++|+.|++|++||++++.....
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--------------- 613 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--------------- 613 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE---------------
Confidence 9999999999999764 45667889999999999997 778999999999999999987643322
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEc-CCCCEEEEEeCCCeEEEEecCCCc-eeeeeccccccEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYT 372 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~ 372 (490)
+.. ...+.++.|+ +++.+|++|+.||.|++||+++.+ .+..+.+|...|.+
T Consensus 614 --------------------------~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~ 666 (793)
T PLN00181 614 --------------------------IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY 666 (793)
T ss_pred --------------------------Eec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence 222 2357888885 579999999999999999998765 46677889999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC------CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
+.|.+ +. +|++++.|++|++||++. ..++..+.+|...++.++|+|++.+||+|+.|+.|++|+
T Consensus 667 v~f~~-~~---------~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 667 VRFVD-SS---------TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEEeC-CC---------EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 99963 32 689999999999999974 356788999999999999999999999999999999999
Q ss_pred cCCCeEEEEEe--------------cCCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 447 LKEGKIVKTYT--------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 447 ~~~~~~~~~~~--------------~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
......+..+. ....|.+++|+|+|+.|++|+.+|+|+||++
T Consensus 737 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 737 KAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 87654432221 1234899999999999999999999999985
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2e-36 Score=282.79 Aligned_cols=285 Identities=36% Similarity=0.616 Sum_probs=251.2
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
.++++|..+|++++|+|++++|++++.||.|++|++.++.. .... ..+...+..+.|++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-------------LRTL----KGHTGPVRDVAASADGTY 65 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-------------EEEE----ecCCcceeEEEECCCCCE
Confidence 46779999999999999999999999999999999875431 1111 234567889999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 216 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
+++++.+|.|++|+... .....+..|...|.++.|+|++.++++++.|+.+++||+.+++....+..|...+.++.|.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 99999999999999876 45667788999999999999988888888899999999998888888887888899999977
Q ss_pred Cce-EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 295 NVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 295 ~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
... +++++.++.+++|++...+++..+..|...+.+++|+|+++.+++++.|+.|++||+..++.+..+..|...+.++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 225 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence 544 4555559999999999888888899999999999999999999999999999999999988888887888899999
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.|+|++. ++++++.||.|++|++.+++.+..+.+|...|.+++|+|++++|++++.||.|++|+
T Consensus 226 ~~~~~~~---------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGY---------LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCc---------EEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999854 677787899999999999999999999999999999999999999999999999996
No 31
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.4e-38 Score=283.43 Aligned_cols=289 Identities=27% Similarity=0.421 Sum_probs=234.5
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeeccc--ccCCCCeEEEEEcCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT--NEKSKDVTTLDWNGE 212 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~s~~ 212 (490)
+..+..|..+|.||+++|+++++++++.|++|.-|++.++.........+ .+.......... ..|.+.|.+++.|+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCcccccccceeEEEEEcCC
Confidence 56778899999999999999999999999999999999887442211111 000000000011 267889999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 213 GTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
|+||++|+.|..|.||+... .....+.+|.++|.+++|....+.|++++.|++|++|++....++.++..|+..+..++
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999875 45567899999999999999999999999999999999999999999999999999998
Q ss_pred ccCCceEEE-EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc-c---
Q 011224 292 WRNNVSFAT-SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-H--- 366 (490)
Q Consensus 292 ~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~--- 366 (490)
.....++++ ++.|.++++|++... ....|.+|.+.+.|++|-. ...|++||.+|.|.+|++.+++++.+.+. |
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 876666655 559999999999444 4457889999999999985 45688999999999999999988876542 1
Q ss_pred --------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC----eEEEEeeCCCCCEEEEEECCCCCEEE
Q 011224 367 --------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLA 434 (490)
Q Consensus 367 --------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spdg~~l~ 434 (490)
...|++++..|... ++|+|+.+|.||+|-+..+ .+++.+. ..+.|++|+|+++|++|+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sd---------L~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~iv 441 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSD---------LLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIV 441 (479)
T ss_pred CCccccccccceeeeEecccCc---------eEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEE
Confidence 12677787777654 8999999999999998876 4555565 567899999999999776
Q ss_pred EE
Q 011224 435 SG 436 (490)
Q Consensus 435 s~ 436 (490)
+|
T Consensus 442 ag 443 (479)
T KOG0299|consen 442 AG 443 (479)
T ss_pred Ee
Confidence 65
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-36 Score=275.92 Aligned_cols=277 Identities=29% Similarity=0.595 Sum_probs=248.8
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
..|++++|+.+|.+||+|+.||.++||+..... ......|.++|.++.|+..|+||++++.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------ISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------hhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 679999999999999999999999999975432 12334578999999999999999999999
Q ss_pred CeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEE
Q 011224 223 GQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFAT 300 (490)
Q Consensus 223 g~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 300 (490)
+++.+||.- +.....+.-|..+-..+.|-.+ ..|++++.|+.|+++-+.....+.++.+|.++|.++.|.+ ...+++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE
Confidence 999999974 4556677888888677888644 5799999999999999999999999999999999999975 566789
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC---------EEEEEeCCCeEEEEecCCCceeeeeccccccEE
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS---------LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 371 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 371 (490)
+++|+++++|.......+..+.+|...|..+.|+|+|. .+++++.|++|++||+..+.+++.|..|..+|+
T Consensus 377 ~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 99999999999999998999999999999999999763 689999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
+++|+|+|. ++|+|+.||.|.+|++++++.+.+..+ .+.|..|+|+.+|.+|..+-.|+.+.+-|++
T Consensus 457 svafS~~g~---------ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 457 SVAFSPNGR---------YLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCc---------EEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999997 899999999999999999999988875 4569999999999999999999999998875
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-35 Score=275.08 Aligned_cols=280 Identities=36% Similarity=0.623 Sum_probs=251.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
+|..+|++++|+|++++|++++.+|.+++|+.... ....+..|...+..+.|+|++++|++++.|+.|++||+.+++..
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 45688999999999999999999999999998653 45677889999999999999999999999999999999988878
Q ss_pred EeeeeeccCeEEEEccCCc-eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 278 QQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
..+..+...+.++.|.++. .+++++.++.+++|++...+++..+..|...+.+++|+|++.++++++.|+.|++||+++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 8888888889999987654 455555699999999998888888889999999999999999999998899999999998
Q ss_pred CceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE
Q 011224 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 357 ~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~ 436 (490)
++.+..+..|...+.++.|+|++. .+++++.+|.|++||++.++.+..+..|..+|.+++|+|++.+++++
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGE---------KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred cccceeEecCccccceEEECCCcC---------EEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 888888888888999999999885 57778889999999999999988888899999999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 437 SLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 437 s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+.||.|++|++.+++.+..+..+ ..+.+++|+|+++.|++++.|+.|.+|+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 98999999999998888777654 4699999999999999999999999996
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-37 Score=272.20 Aligned_cols=301 Identities=26% Similarity=0.381 Sum_probs=239.3
Q ss_pred ceecCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEE
Q 011224 127 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 206 (490)
Q Consensus 127 ~~~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 206 (490)
...+|.....+|..|+++|.-+.||++|++|||||.|.+..+|.+..-.. + .+.....+|..+|..
T Consensus 209 ~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----------~----kl~~tlvgh~~~V~y 274 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----------F----KLKKTLVGHSQPVSY 274 (519)
T ss_pred cccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----------e----eeeeeeecccCceEE
Confidence 34578888889999999999999999999999999999999999754221 1 112233457889999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCceeEEe--cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 207 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 207 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+.||||.++|++|+.+..+++||......... .+|...+.+.+|.|+|..|++|+.|+++..||+.... ...++.-.
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr 353 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVR 353 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccc
Confidence 99999999999999999999999876543332 3356889999999999999999999999999987543 22333222
Q ss_pred -cCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee
Q 011224 285 -GPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 362 (490)
Q Consensus 285 -~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 362 (490)
..+.++... ++..+++...|..|++++......+... .-..+|+++.+|.+++++++.-.+..+++||+...+.+..
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 335566554 3445566668888888887654443222 2346799999999999999999999999999998888888
Q ss_pred eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCc
Q 011224 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKS 441 (490)
Q Consensus 363 ~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~ 441 (490)
+.+|...-+-|.-+-.|. ...++++||.|+.|+||+..+++++.++.||...|++|+|+|.. .++|+||.||+
T Consensus 433 Y~Ghkq~~fiIrSCFgg~------~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 433 YFGHKQGHFIIRSCFGGG------NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred hhcccccceEEEeccCCC------CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 888877655554333332 22489999999999999999999999999999999999999965 67899999999
Q ss_pred EEEEEcCC
Q 011224 442 MHIWSLKE 449 (490)
Q Consensus 442 i~iw~~~~ 449 (490)
|+||-...
T Consensus 507 IRIWg~~~ 514 (519)
T KOG0293|consen 507 IRIWGPSD 514 (519)
T ss_pred EEEecCCc
Confidence 99998753
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-36 Score=284.74 Aligned_cols=286 Identities=26% Similarity=0.363 Sum_probs=253.6
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
.++..|+..|-++.|||...+++++=..|.|.||+.++....+. .....-||.+..|-+..++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks-----------------feV~~~PvRa~kfiaRknW 69 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS-----------------FEVSEVPVRAAKFIARKNW 69 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee-----------------eeecccchhhheeeeccce
Confidence 35667999999999999999999999999999999887543221 1112457888899999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 216 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
+++|+.|..|+||+.+. +.+..|..|.+-|.+++.||...+++|+|.|-+|++||.+.+
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-------------------- 129 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-------------------- 129 (794)
T ss_pred EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--------------------
Confidence 99999999999999875 567789999999999999999999999999999999997543
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
..+.++|.||+..|.+++|+|. .+.+|+++-|++|+||.+.+..+..++.+|...|.++
T Consensus 130 --------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~V 189 (794)
T KOG0276|consen 130 --------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCV 189 (794)
T ss_pred --------------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceE
Confidence 1234678999999999999995 5789999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 453 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~ 453 (490)
.|-+.|. +.+|+||+.|.+|+|||.++..|+.++.||...|..+.|+|.-+.++|||.||+|+||+..+.++.
T Consensus 190 dyy~~gd-------kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 190 DYYTGGD-------KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred EeccCCC-------cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehh
Confidence 9988774 348999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEe-cCCCEEEEEECCCCCEEEEEECCCcEEE
Q 011224 454 KTYT-GNGGIFEVCWNKEGDKIAACFANHTVCV 485 (490)
Q Consensus 454 ~~~~-~~~~v~~~~~~~~g~~la~~~~d~~v~v 485 (490)
.++. +.+.+++++-.+.++.++.|+..|.|.|
T Consensus 263 ~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 263 KTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 8774 4567999999999999999999998765
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8e-36 Score=262.41 Aligned_cols=286 Identities=22% Similarity=0.383 Sum_probs=232.7
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...+.+|+..|+|+.||.+|.+||||..+|.|+||+..++.... .+ ...-..+.-|.|+|.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~----------~~-------~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW----------KL-------DQEVEDIEWLKWHPRAH 161 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE----------Ee-------ecccCceEEEEeccccc
Confidence 45788999999999999999999999999999999988764211 11 01235678899999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec-cCeEEEEc
Q 011224 215 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW 292 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~ 292 (490)
+|+.|+.||.+.+|.+.. .....+.+|+.++++-.|.|+|+.++++..||+|++||+.++.....+.... .+..++.+
T Consensus 162 illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~ 241 (399)
T KOG0296|consen 162 ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL 241 (399)
T ss_pred EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence 999999999999999876 5667899999999999999999999999999999999999997665554221 12233333
Q ss_pred c-CCceEEEEcCCCeEEEEEcCCCcceeEec--------CCCCCeeEEE---EcCCCCEEEEEeCCCeEEEEecCCCcee
Q 011224 293 R-NNVSFATSSTDNMIYVCKIGENRPIKTFA--------GHQGEVNCVK---WDPTGSLLASCSDDVTAKIWNMKQDKYV 360 (490)
Q Consensus 293 ~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--------~h~~~v~~v~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 360 (490)
. ....++.++.++.+++.....++.+..+. .+...+.||. |+..-++.|+|+-||+|.|||+...++.
T Consensus 242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R 321 (399)
T KOG0296|consen 242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR 321 (399)
T ss_pred ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence 3 23345566777777777777776665555 3444455554 4555678999999999999999877765
Q ss_pred eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC
Q 011224 361 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 361 ~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
+.+ .|...|..+.|-+.. +|++++.||.|+.||.++|++++++.||..+|.+++++|++++++|+|.|+
T Consensus 322 ~~c-~he~~V~~l~w~~t~----------~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 322 HIC-EHEDGVTKLKWLNTD----------YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred eec-cCCCceEEEEEcCcc----------hheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 544 577889999998832 789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEcC
Q 011224 441 SMHIWSLK 448 (490)
Q Consensus 441 ~i~iw~~~ 448 (490)
+.+||++.
T Consensus 391 ~a~VF~v~ 398 (399)
T KOG0296|consen 391 TALVFEVP 398 (399)
T ss_pred eEEEEecC
Confidence 99999864
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-37 Score=272.39 Aligned_cols=268 Identities=28% Similarity=0.521 Sum_probs=232.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeE
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 278 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 278 (490)
.++.|+|+.+. ...+++|..|++|+|||.+. .....+.||++.|.|+.|.. ..+++||+|.+|++||+++++++.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 46789999875 45789999999999999876 45567899999999998854 589999999999999999999999
Q ss_pred eeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcc---eeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 279 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
++..|...++.+.|.++ .+++++.|.++.+|++..... ...+.||...|+.+.|+ .+++++++.|.+|++|++.
T Consensus 272 tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred HHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecc
Confidence 99999999999988665 578999999999999987653 34678999999999995 5799999999999999999
Q ss_pred CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
+..+++++.+|...|.|+.+.- .++++||.|.+|++||+..|.++..+.||..-|.+|.| |.+.|++
T Consensus 349 t~efvRtl~gHkRGIAClQYr~-----------rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS 415 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYRD-----------RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 415 (499)
T ss_pred ceeeehhhhcccccceehhccC-----------eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeee
Confidence 9999999999999999887642 27899999999999999999999999999999999999 4568999
Q ss_pred EeCCCcEEEEEcCCCeEE---------EEE-ecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 436 GSLDKSMHIWSLKEGKIV---------KTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 436 ~s~dg~i~iw~~~~~~~~---------~~~-~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|+.||+|+|||+..+.-. .++ .+.+.|+.+.|. --.+++++.|.+|-||||-
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL 477 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence 999999999999876422 222 223578999884 4579999999999999983
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.8e-35 Score=244.84 Aligned_cols=265 Identities=20% Similarity=0.357 Sum_probs=227.3
Q ss_pred CEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc--eeEeeeeeccCeEEE
Q 011224 214 TLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDV 290 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~ 290 (490)
-+|+|+|+|.+||+|..... ...+++...+.|..|...|++..|++++. ..||+||++++. .+.+|+.|...+..+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999997654 45566666678999999999998888775 679999999876 577899999999999
Q ss_pred EccCC-ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc-ccc
Q 011224 291 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSK 368 (490)
Q Consensus 291 ~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~ 368 (490)
.|..+ .-..+++.||++++|+++.....+.| .|..+|+++..+|+...|++|..+|.|++||+....+.+.+.. ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99755 45679999999999999986555554 4779999999999999999999999999999998877665543 446
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC------eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
.|.++...|+|+ +|+.+..-|+..+|++-+. .++..+..|.+-|..+.||||+++||++|.|.++
T Consensus 169 ~i~sl~v~~dgs---------ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv 239 (311)
T KOG0315|consen 169 SIQSLTVMPDGS---------MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTV 239 (311)
T ss_pred ceeeEEEcCCCc---------EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceE
Confidence 789999999997 7888999999999998654 3556788999999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 443 HIWSLKEG-KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 443 ~iw~~~~~-~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+||+..+. ++...+.++. .+++++||.||.+|++|+.|+++++|+++
T Consensus 240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 99999987 5556666654 59999999999999999999999999875
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=244.97 Aligned_cols=291 Identities=19% Similarity=0.316 Sum_probs=243.9
Q ss_pred ecCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEE
Q 011224 129 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 208 (490)
Q Consensus 129 ~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 208 (490)
++|.....+|.+|+++|+++.|+-+|+|.+|++.|.+||+|+...+. .++. +.+|...|..++
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-------------likt----YsghG~EVlD~~ 66 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-------------LIKT----YSGHGHEVLDAA 66 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccc-------------eeee----ecCCCceeeecc
Confidence 45666778899999999999999999999999999999999976553 2333 344567799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc--ceeEeeeeecc
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--EWKQQFEFHSG 285 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~~~~ 285 (490)
.+.|...|++|+.|..+.+||.+. +....+.+|.+.|..++|+.+...+++||.|.++++||.++. +.++.+.....
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 999999999999999999999874 566789999999999999999999999999999999998765 45666666666
Q ss_pred CeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc
Q 011224 286 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 365 (490)
.+.+++.. ...+++++.||+++.|+++.+.....+.|| +|+|+.|+++++..+.++.|+++++.|-.+++.+...++
T Consensus 147 ~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 147 GVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred ceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 67777654 346788999999999999988776666554 799999999999999999999999999999999999999
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCC-EEEEEECCCCCEEEEEeCCCcEEE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASGSLDKSMHI 444 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~spdg~~l~s~s~dg~i~i 444 (490)
|...-+.+..+-..+ ...+++||.||.|.+||+.....+..+..+... |++|+++|.-.-|+++.. +.+.+
T Consensus 224 hkn~eykldc~l~qs-------dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~ 295 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQS-------DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLF 295 (307)
T ss_pred cccceeeeeeeeccc-------ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceec
Confidence 988766654433222 236899999999999999999999999888877 899999998776766653 44666
Q ss_pred EEc
Q 011224 445 WSL 447 (490)
Q Consensus 445 w~~ 447 (490)
|--
T Consensus 296 ~~~ 298 (307)
T KOG0316|consen 296 WYQ 298 (307)
T ss_pred eee
Confidence 643
No 40
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-36 Score=266.18 Aligned_cols=273 Identities=24% Similarity=0.461 Sum_probs=233.7
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
-.++|+|+.+ |...++||..|++|+|||..+-.+ ++ ...+|++.|.|+.|.. +.+++|+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c-------------~~----~L~GHtGSVLCLqyd~--rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLEC-------------LK----ILTGHTGSVLCLQYDE--RVIVSGS 254 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHH-------------HH----hhhcCCCcEEeeeccc--eEEEecC
Confidence 4578999988 567899999999999999765321 22 2345688999998864 5999999
Q ss_pred CCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc---eeEeeeeeccCeEEEEccCCc
Q 011224 221 YDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNV 296 (490)
Q Consensus 221 ~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~ 296 (490)
.|.+|+|||.+. +...++.+|..+|..+.|+. .+++++|.|.++.+||+.... +...+.+|...+..++|.+.
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 999999999874 56678889999999999974 699999999999999987543 34456788889999999766
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
.+++++.|.+|++|++.+...++++.||...|.|+.+ .++++++|+.|.+|++||+..|.+++.+.+|..-|.++.|.
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 7899999999999999999999999999999999988 58999999999999999999999999999999999999996
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe---------EEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
.. -+++|+.||+|++||+..+. ++.++..|.+.|..+.| |...|++++.|.+|.|||+
T Consensus 410 ~k-----------rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 410 NK-----------RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Cc-----------eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEc
Confidence 53 48999999999999987653 34456678999999999 4567999999999999999
Q ss_pred CCCeE
Q 011224 448 KEGKI 452 (490)
Q Consensus 448 ~~~~~ 452 (490)
.++-.
T Consensus 477 l~~~~ 481 (499)
T KOG0281|consen 477 LNGPP 481 (499)
T ss_pred CCCCc
Confidence 87653
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-35 Score=279.24 Aligned_cols=286 Identities=25% Similarity=0.395 Sum_probs=247.3
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
..+.||...|++++||.+...++||+. +.+++|+..+.++..+.. ...+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~-------------------~~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT-------------------CGYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec-------------------cccEEEEEecCCCce
Confidence 467799999999999999999998865 579999988766432211 235889999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC-----cceeEeee-------e
Q 011224 216 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFE-------F 282 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~-------~ 282 (490)
+++|...|.+.++|... ....++..|.++|++++.+|++..+++||.|++|++||..- +.....+. .
T Consensus 427 Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred EEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 99999999999999764 45557789999999999999999999999999999998642 11111111 1
Q ss_pred eccCeEEEEccCCc-eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee
Q 011224 283 HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 361 (490)
Q Consensus 283 ~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 361 (490)
-...+.++.+.++. .++.+--|+++.+|.+++-+....+.||.-+|.|++++||+++++|||.|..|+||-+.-|.|..
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh
Confidence 23467788887655 45677789999999999999888999999999999999999999999999999999999999999
Q ss_pred eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCc
Q 011224 362 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 441 (490)
Q Consensus 362 ~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~ 441 (490)
.+.+|+..|+++.|.|... ++.+++.|+.|+-||-..-..+..+.+|...|++++.+|+|.|++++|.|.+
T Consensus 587 S~fAHdDSvm~V~F~P~~~---------~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTH---------LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred hhhcccCceeEEEEcccce---------eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 9999999999999999764 7899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCC
Q 011224 442 MHIWSLKEG 450 (490)
Q Consensus 442 i~iw~~~~~ 450 (490)
|++|...+.
T Consensus 658 IRlwE~tde 666 (888)
T KOG0306|consen 658 IRLWERTDE 666 (888)
T ss_pred eEeeeccCc
Confidence 999987653
No 42
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=3.9e-35 Score=268.54 Aligned_cols=303 Identities=24% Similarity=0.331 Sum_probs=237.9
Q ss_pred eecCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEE
Q 011224 128 FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 207 (490)
Q Consensus 128 ~~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 207 (490)
..||...-..|++|+..|.++++.|.|..|+|||.|.+|++||+..... ..+.++.........|.++
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda------------s~~~fr~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA------------SMRSFRQLQPCETHQINSL 220 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc------------cchhhhccCccccccccee
Confidence 4588888899999999999999999999999999999999999875421 1122222333445679999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCceeEE-------------ecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccC
Q 011224 208 DWNGEGTLLATGSYDGQARIWSTNGDLKCT-------------LSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 208 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-------------~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~ 273 (490)
+|++.|..|++.+...+++|+|..+..... ..+|...+++.+|+|.. ..|+||+.||++||||+..
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 999999999999999999999987754332 35799999999999987 4699999999999999876
Q ss_pred cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEe
Q 011224 274 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd 353 (490)
.+-..... .. +...+..-.++.++|+|+|++||+|+.||.|.+|+
T Consensus 301 ~k~q~qVi-----------------------------k~------k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~ 345 (641)
T KOG0772|consen 301 TKSQLQVI-----------------------------KT------KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD 345 (641)
T ss_pred chhheeEE-----------------------------ee------ccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence 43211110 00 00112334688999999999999999999999999
Q ss_pred cCCCce--ee-eeccccc--cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCC--CCEEEEE
Q 011224 354 MKQDKY--VH-DLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHR--EPVYSLA 425 (490)
Q Consensus 354 ~~~~~~--~~-~~~~~~~--~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~--~~v~~l~ 425 (490)
...... .. .-.+|.. .|++|.||++|. +|++-+.|+++++||++.. +++.+..+.. -+-+.++
T Consensus 346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~---------~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~ 416 (641)
T KOG0772|consen 346 KGSRTVRPVMKVKDAHLPGQDITSISFSYDGN---------YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCC 416 (641)
T ss_pred cCCcccccceEeeeccCCCCceeEEEeccccc---------hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccc
Confidence 744321 11 1235655 899999999997 8999999999999999865 4555544432 3457899
Q ss_pred ECCCCCEEEEEeC------CCcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 426 FSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 426 ~spdg~~l~s~s~------dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
|||+.++|+||+. -|++.+|+..+...+..+.- ...|..+.|||.-+.|.+|+.||+++||
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 9999999999863 47899999999888777643 4458899999999999999999999887
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=269.49 Aligned_cols=289 Identities=22% Similarity=0.402 Sum_probs=240.4
Q ss_pred ecCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEE
Q 011224 129 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 208 (490)
Q Consensus 129 ~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 208 (490)
.+|......+..|.+.|+.+.|-++...|+|||.|..|++|++...+.. +.+...+..++|+.++
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d 226 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSID 226 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceee
Confidence 4677777889999999999999999999999999999999998654311 1122234457899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
|.+++.++++++.|+.+++|+.+. ....++.+|++.|+++.|......+++|+.|.+|++||+....+..++..
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~----- 301 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP----- 301 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----
Confidence 999999999999999999999875 55678999999999999998887899999999999999987665443321
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
...++.|..+ ...+++|..|++||+||.++..++.++..+.
T Consensus 302 -------------------------------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg 342 (459)
T KOG0288|consen 302 -------------------------------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG 342 (459)
T ss_pred -------------------------------------cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc
Confidence 1122333333 4568899999999999999999888876655
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC----CCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH----REPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h----~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
.|+++..++++. -|.+++.|.++.+.|+++......+.+. ...++.+.|||++.|+|+||.||.|+
T Consensus 343 -~vtSl~ls~~g~---------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 343 -RVTSLDLSMDGL---------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred -ceeeEeeccCCe---------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEE
Confidence 899999999885 5777899999999999988877665431 12378999999999999999999999
Q ss_pred EEEcCCCeEEEEEec---CCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 444 IWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 444 iw~~~~~~~~~~~~~---~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
||++.+|++...+.. +.+|++++|+|.|..|++++.++.+++|
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999877754 3469999999999999999999999998
No 44
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=243.22 Aligned_cols=283 Identities=24% Similarity=0.368 Sum_probs=248.9
Q ss_pred ccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCce---eEEecCCCCCEEEEEecCC-CCEEEEEeCCCeEEEEEc
Q 011224 196 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 196 ~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~---~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~ 271 (490)
.+.+|.+.|.+++|+.+|..|++|+.|+++.+|+++... .....+|.+.|-.++|+|. .+.|++++.|++|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 445677889999999999999999999999999987642 2356789999999999875 468999999999999999
Q ss_pred cCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
+.+++........+.+...-+.++..++.+..|..|...+.++.+.+..+. ..-.++-+.|+.++.+++....-|+|.|
T Consensus 95 r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~I 173 (313)
T KOG1407|consen 95 RSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEI 173 (313)
T ss_pred ccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEE
Confidence 999998888776666665556777888999999999999988877665433 3346788999988888888888899999
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 431 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 431 (490)
..+..-+++.++++|...+.||.|+|+|. +||+|+.|..+.+||+...-++..+.-+.-||..|+||.||+
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~Gr---------yfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~ 244 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGR---------YFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGR 244 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCc---------eEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcc
Confidence 99999999999999999999999999997 899999999999999998888899999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECC---------CcEEEEEe
Q 011224 432 YLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---------HTVCVLDF 488 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d---------~~v~v~~~ 488 (490)
|||+||.|..|-|=++.+|..+..++..+..+.++|+|...+||.+..| |+|++|.+
T Consensus 245 ~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 245 MLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 9999999999999999999999999999999999999999999988664 46777654
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=259.50 Aligned_cols=246 Identities=26% Similarity=0.472 Sum_probs=227.2
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC-ceEEEEcCCCeEEEEEc
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKI 312 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~ 312 (490)
+...+.+|.+-|.++++.|.+.+|++|+.|++++|||+.++.+..++.+|...+..+.+.+. -.+.+++.|+.|..||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34467899999999999999999999999999999999999999999999999988888654 45678899999999999
Q ss_pred CCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEE
Q 011224 313 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 313 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
..++.|+.|.||-+.|.|++.+|.-..|+||+.|.++||||+++...++.+.+|..+|.++.+.|... .++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp---------qvi 293 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP---------QVI 293 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC---------ceE
Confidence 99999999999999999999999999999999999999999999999999999999999999987654 488
Q ss_pred EEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC-EEEEEECCCC
Q 011224 393 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEG 471 (490)
Q Consensus 393 sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-v~~~~~~~~g 471 (490)
+||.|++|++||++.|+...++..|...|.+++.+|....+|++|.|. |+-|++..|..++.+.++.. |+.++.+.||
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc
Confidence 999999999999999999999999999999999999999999999885 99999999999888877554 7899998887
Q ss_pred CEEEEEECCCcEEEEEeeC
Q 011224 472 DKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 472 ~~la~~~~d~~v~v~~~~~ 490 (490)
++++|+.+|.+++||++.
T Consensus 373 -v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 373 -VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred -eEEEcCCceEEEEEecCc
Confidence 788999999999999873
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-35 Score=242.93 Aligned_cols=242 Identities=24% Similarity=0.453 Sum_probs=219.7
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc-cCCceEEEEcCCCeEEEEEc
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKI 312 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~ 312 (490)
....+..|+++|..+.|+-+|+|.++|+.|++|++||+..+.+++++..|...+.++.. .++..|++++.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567889999999999999999999999999999999999999999999999998876 46788999999999999999
Q ss_pred CCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC--ceeeeeccccccEEEEEEcCCCCCCCCCCCcEE
Q 011224 313 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390 (490)
Q Consensus 313 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~ 390 (490)
.+++.++.|.||.+.|+.++|+.+...+++|+.|.++++||-++. ++++.+......|.++..+.. .
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-----------e 157 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-----------E 157 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc-----------E
Confidence 999999999999999999999999999999999999999998765 567777777788888887543 5
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC---EEEEEE
Q 011224 391 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG---IFEVCW 467 (490)
Q Consensus 391 l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~---v~~~~~ 467 (490)
+++||.||++|.||++.|+.....-+| ||++++||+||+.+..++.|++|++.|-.+|++++.|.++.. =..+++
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l 235 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCL 235 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeee
Confidence 889999999999999999887666555 899999999999999999999999999999999999988653 357889
Q ss_pred CCCCCEEEEEECCCcEEEEEe
Q 011224 468 NKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~~ 488 (490)
+....++++|+.||.|.+||+
T Consensus 236 ~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 236 NQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cccceeEEeccCCceEEEEEe
Confidence 998999999999999999997
No 47
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.3e-34 Score=256.01 Aligned_cols=279 Identities=27% Similarity=0.468 Sum_probs=235.6
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC---CEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---TLL 216 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~---~~l 216 (490)
.|.+.|.++... +++++||+.||.+++|+.... ..+. ..+|+++|..++|.... ..|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--------------~~~~----~~Ght~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--------------SIKT----IVGHTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCc--------------eEEE----EecCCcceeeeEEEecCCccceE
Confidence 389999999877 789999999999999997532 1222 23567889988886433 359
Q ss_pred EEEeCCCeEEEEECCCc-----eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC------------------
Q 011224 217 ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------------------ 273 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~------------------ 273 (490)
++++.|.++++|..+.. ......||..+|-++...++|..+++||.|.+|+||+..+
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999986542 1223359999999999999999999999999999998321
Q ss_pred -------cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 011224 274 -------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346 (490)
Q Consensus 274 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 346 (490)
+..+..+.+|..+|.++.|.+...+.+++-|.+|+.||+..+..+..+.+ ...++|++.+|..++|++|+.|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC
Confidence 12344678899999999999998999999999999999999888776654 3468999999999999999999
Q ss_pred CeEEEEecCCCc---eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEeeCCCCCEE
Q 011224 347 VTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVY 422 (490)
Q Consensus 347 g~i~iwd~~~~~---~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~ 422 (490)
..||+||.+++. ..+++.+|...|.++.|+|... +.|++|+.|+++++||+++.+ +++.+.+|...|.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~--------~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE--------FQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL 393 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc--------eEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence 999999998753 3567889999999999999764 689999999999999999887 9999999999999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 423 SLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 423 ~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
++.|+ .+.+|++||.|++|+|+...
T Consensus 394 ~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEecc-CCceEEeccCcceEEEeccc
Confidence 99997 46789999999999998753
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-34 Score=272.25 Aligned_cols=328 Identities=21% Similarity=0.333 Sum_probs=252.9
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
+..|+|++-+|+.-+||.|-.||.|+||++.+... .-..++|...|+++.|...|..|+|||.
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-----------------~~tfngHK~AVt~l~fd~~G~rlaSGsk 127 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-----------------LITFNGHKAAVTTLKFDKIGTRLASGSK 127 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCce-----------------eeeecccccceEEEEEcccCceEeecCC
Confidence 35899999999999999999999999999875421 1123567889999999999999999999
Q ss_pred CCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC------
Q 011224 222 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN------ 294 (490)
Q Consensus 222 dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~------ 294 (490)
|+.|.+||+-++ -...+.+|+..|+..-|....+.++++|.|+.|++||+.+..+..+.-.|.+.+..+.+..
T Consensus 128 Dt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~ 207 (888)
T KOG0306|consen 128 DTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTA 207 (888)
T ss_pred CccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEE
Confidence 999999997654 4568899999999999998889999999999999999987654433322221111110000
Q ss_pred --------------------------------------------------------------------------------
Q 011224 295 -------------------------------------------------------------------------------- 294 (490)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (490)
T Consensus 208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~ 287 (888)
T KOG0306|consen 208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL 287 (888)
T ss_pred ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 011224 295 -------------------------------------------------------------------------------- 294 (490)
Q Consensus 295 -------------------------------------------------------------------------------- 294 (490)
T Consensus 288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i 367 (888)
T KOG0306|consen 288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI 367 (888)
T ss_pred HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence
Q ss_pred ----------------CceEEEEcCCCeEEEEEcCCCcceeE--------------------------------------
Q 011224 295 ----------------NVSFATSSTDNMIYVCKIGENRPIKT-------------------------------------- 320 (490)
Q Consensus 295 ----------------~~~~~~~~~d~~i~~~~~~~~~~~~~-------------------------------------- 320 (490)
+..++.++..+.+.+|+..+.+++++
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 00023344556778888776554432
Q ss_pred --ecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC-----C---ceee----eeccccccEEEEEEcCCCCCC----
Q 011224 321 --FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-----D---KYVH----DLREHSKEIYTIRWSPTGSGT---- 382 (490)
Q Consensus 321 --~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~-----~---~~~~----~~~~~~~~i~~v~~~p~g~~~---- 382 (490)
..+|.+.|++++.+||++.++|||.|.+|++||..- + +.+. ..-.....|.++.+||++.-.
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe
Confidence 246889999999999999999999999999998631 1 1000 000123445666666665410
Q ss_pred ------------------------------CCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCE
Q 011224 383 ------------------------------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432 (490)
Q Consensus 383 ------------------------------~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~ 432 (490)
..|+. .+++|||.|.+|++|-++-|.|-.++-+|.+.|.++.|-|...+
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHL 606 (888)
T ss_pred ccCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccccee
Confidence 01111 27899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 433 LASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 433 l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+.|+|.|+.|+-||-.+.+.++.+.++. .|++++.+|.|.++++++.|++|++|.
T Consensus 607 FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999988898888754 599999999999999999999999995
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.1e-36 Score=271.77 Aligned_cols=283 Identities=22% Similarity=0.406 Sum_probs=240.9
Q ss_pred cccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC--CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011224 195 GRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 195 ~~~~~~~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 271 (490)
....+|.+.|+++.|.| .+.+|++|+.|+.|+||++. +.++.++.+|..+|..++|+++|..|+|+|-|+.+++||+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 34567889999999999 89999999999999999975 4677899999999999999999999999999999999999
Q ss_pred cCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeE
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 349 (490)
++|.+...+... ..+.++.|. +...|++|+.|+.|+.||++.++.++.+..|-+.|+.+.|-++|+.+++.++|+++
T Consensus 288 ETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 288 ETGQVLSRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred ccceEEEEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 999988877543 345566664 34688999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe---EEEEeeCCCC--CEEE
Q 011224 350 KIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHRE--PVYS 423 (490)
Q Consensus 350 ~iwd~~~~~~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---~~~~~~~h~~--~v~~ 423 (490)
+||+.+..-.+..+. .....+.++..+|.+. +++.-+.|+.|.+|.+...- ....+.||.. --..
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~---------~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGK---------WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCC---------eehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 999998776554322 2334556777788876 78888999999999865322 2234667753 3567
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCC-CEEEEEECCCcEEEEE
Q 011224 424 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACFANHTVCVLD 487 (490)
Q Consensus 424 l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g-~~la~~~~d~~v~v~~ 487 (490)
+.|||||.+|++|+.||.+.+||.++-+++..+..+ +.+..+.|+|.- +.+|+|+.+|.|.+|+
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 899999999999999999999999999999888776 679999999964 6999999999999996
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-35 Score=256.97 Aligned_cols=253 Identities=28% Similarity=0.467 Sum_probs=232.3
Q ss_pred EECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCe
Q 011224 228 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNM 306 (490)
Q Consensus 228 w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ 306 (490)
|-....+...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+.+|...+.++.+.. ...+++++.|-.
T Consensus 94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS 173 (406)
T ss_pred cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence 5444455667788999999999999999999999999999999999999999999999999999975 456788899988
Q ss_pred EEEEEcCC-CcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCC
Q 011224 307 IYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 385 (490)
Q Consensus 307 i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~ 385 (490)
+.+|+..+ ..+++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++-++.++.+|...+..++...+|.
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt----- 248 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT----- 248 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-----
Confidence 99999887 567788889999999999999999999999999999999999999999999999999999998886
Q ss_pred CCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCC---------------CCEEEEEeCCCcEEEEEcCCC
Q 011224 386 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT---------------GEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 386 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd---------------g~~l~s~s~dg~i~iw~~~~~ 450 (490)
++|+++.|.+|++|-+.++.+...+..|.-+|.+++|.|. +++++++|.|++|++||+.+|
T Consensus 249 ----i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 249 ----IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred ----EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 8999999999999999999999999999999999999763 259999999999999999999
Q ss_pred eEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 451 KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 451 ~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.++.++.++. .|.+++|+|.|++|++|..|++++|||++
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9999998865 59999999999999999999999999986
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-34 Score=276.71 Aligned_cols=279 Identities=24% Similarity=0.383 Sum_probs=244.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeE
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 278 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 278 (490)
.+..|..++|+|.-.+++++-.+|.|++||..- .++..|..|.+||.++.|||.+..|+||+.|..|++|+..+..+..
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 356789999999999999999999999999763 4566889999999999999999999999999999999999999999
Q ss_pred eeeeeccCeEEEEccCC-ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 279 QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
++.+|..-+..+.|+.. --++++++|.+|++|+..+.+.+..+.||...|.|..|+|...+++|+|-|.+|||||+..-
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGL 167 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGL 167 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecch
Confidence 99999999999999765 45678899999999999999999999999999999999999999999999999999997421
Q ss_pred c-----------------------------eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC
Q 011224 358 K-----------------------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 408 (490)
Q Consensus 358 ~-----------------------------~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 408 (490)
+ .-+.+.+|...|.-++|+|.-. +++||+.|..|++|.+...
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp---------liVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP---------LIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc---------eEEecCCcceeeEEEeccc
Confidence 0 0123567888888899998764 8999999999999998644
Q ss_pred eE--EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCCEEEEEECCCcEEE
Q 011224 409 KL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCV 485 (490)
Q Consensus 409 ~~--~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v 485 (490)
+. +-+..||.+.|.++-|+|.-.+++|.|.|++|+|||....+.++++.. +...+.++-+|..+++|+|..+| +-|
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsG-m~V 317 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSG-MIV 317 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCc-eEE
Confidence 32 345679999999999999999999999999999999999999999964 66799999999999999887766 445
Q ss_pred EEe
Q 011224 486 LDF 488 (490)
Q Consensus 486 ~~~ 488 (490)
|-+
T Consensus 318 Fkl 320 (1202)
T KOG0292|consen 318 FKL 320 (1202)
T ss_pred EEE
Confidence 543
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.4e-35 Score=252.03 Aligned_cols=289 Identities=20% Similarity=0.344 Sum_probs=240.2
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
|.++-+.|..|||||.+|+|||.||.|.+|+..+|+..+........ ..--+..+|.|++||.|..++++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd---------~fMMmd~aVlci~FSRDsEMlAsG 281 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD---------NFMMMDDAVLCISFSRDSEMLASG 281 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc---------ceeecccceEEEeecccHHHhhcc
Confidence 55677899999999999999999999999999988754433221111 112235789999999999999999
Q ss_pred eCCCeEEEEECCC-ceeEEec-CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 220 SYDGQARIWSTNG-DLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 220 ~~dg~i~iw~~~~-~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
+.||.|+||.+.. .+...|. .|+..|+++.|+.++..+++++.|.++++.-+.+++
T Consensus 282 sqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK---------------------- 339 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK---------------------- 339 (508)
T ss_pred CcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch----------------------
Confidence 9999999999764 4444554 799999999999999999999999999998776654
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc--cccEEEEEE
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIRW 375 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~v~~ 375 (490)
.++.|+||.+.|+.+.|.++|..+++++.||+|++|+.++..++.+++.. .-+|.++..
T Consensus 340 -------------------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~ 400 (508)
T KOG0275|consen 340 -------------------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL 400 (508)
T ss_pred -------------------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE
Confidence 45678899999999999999999999999999999999999999888754 346677766
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC---CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH---REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
-|... ..++.|...++|.|.++. |+.+.++... .+..-+.+.||.|.++.+.+.|+.++.|.+.+|++
T Consensus 401 ~PKnp--------eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 401 LPKNP--------EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred cCCCC--------ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 66543 246778888999999986 7777777532 23455667899999999999999999999999999
Q ss_pred EEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 453 VKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 453 ~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
..++..+ ..+..++-+|..+.||+-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9888754 4588999999999999999999999983
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.6e-33 Score=275.63 Aligned_cols=240 Identities=40% Similarity=0.690 Sum_probs=214.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
...|.++.|+++|+++++++.++.+++|+.... ....+.+|...|..++|+|++.++++|+.|++++|||+...
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--- 235 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--- 235 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---
Confidence 578999999999999999999999999998433 34556899999999999999999999999999999998322
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
...++++.||...|++++|+|+|+++++|+.|++|+|||++++
T Consensus 236 -------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 236 -------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred -------------------------------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 1335678899999999999999999999999999999999999
Q ss_pred ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEEeeCCCCC--EEEEEECCCCCEE
Q 011224 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREP--VYSLAFSPTGEYL 433 (490)
Q Consensus 358 ~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~--v~~l~~spdg~~l 433 (490)
+++..+.+|...|.+++|++++. +|++++.|+.|++||+.++. ++..+.++..+ ++.+.|+|++.+|
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~---------~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGN---------LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCC---------EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 99999999999999999999997 78899999999999999999 56777776655 9999999999999
Q ss_pred EEEeCCCcEEEEEcCCCeEEEEEecCC----CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 434 ASGSLDKSMHIWSLKEGKIVKTYTGNG----GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 434 ~s~s~dg~i~iw~~~~~~~~~~~~~~~----~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++++.|+.+++|++..+..+..+.++. .+++...++.|..+.+|+.|+.|.+||..
T Consensus 350 l~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 350 LSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence 999999999999999999888886643 34566678899999999999999999974
No 54
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.3e-33 Score=234.00 Aligned_cols=236 Identities=32% Similarity=0.635 Sum_probs=199.0
Q ss_pred cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC-c---eeEEe-cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011224 199 EKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-D---LKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 199 ~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~-~---~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 272 (490)
+|...|..++|+|- |..|+||+.|+.|+||+..+ . .+..+ .+|+..|.+++|+|.|++|++||-|.++.||.-.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 34567999999998 89999999999999999874 2 12222 4799999999999999999999999999999644
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iw 352 (490)
.+++ ..+.++.||..+|.|++|+++|++||||+.|..|-||
T Consensus 92 ~~ef---------------------------------------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 92 DGEF---------------------------------------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred CCce---------------------------------------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 3321 2345788999999999999999999999999999999
Q ss_pred ecCCC---ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC---CCeEEEEeeCCCCCEEEEEE
Q 011224 353 NMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 353 d~~~~---~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~ 426 (490)
.+..+ .++..++.|...|..+.|+|... +|+|+|.|.+|++|.-. .-.++.++.+|...|.+++|
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHPt~d---------lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F 203 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTED---------LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAF 203 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcCCcc---------eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEe
Confidence 98744 45677889999999999999764 89999999999999765 34688999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+|.|..|++++.|++|+||-..+.- .......++.++|. ...||+++.|+.|.||-
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 9999999999999999999865211 11123568999998 45899999999999873
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-33 Score=267.85 Aligned_cols=284 Identities=21% Similarity=0.380 Sum_probs=247.1
Q ss_pred ccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 138 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
+..-+..|-.++|||...+++++=-.|.|.+||..=+. +.....+|.++|..++|+|+..+|+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------li~rFdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------LIDRFDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------HHhhhhccCCccceeeecCCCCeEE
Confidence 45567789999999999999999999999999975332 2334567889999999999999999
Q ss_pred EEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-C
Q 011224 218 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 295 (490)
Q Consensus 218 sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~ 295 (490)
|||.|-.|+||+... .+..++.+|-+.|..+.||+.-.+++|+|.|.||+|||..++.++..+.+|.--|++..|++ .
T Consensus 68 SGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred ecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 999999999999764 45668899999999999999999999999999999999999999999999999999999987 6
Q ss_pred ceEEEEcCCCeEEEEEcCCCc-----------------------------ceeEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 011224 296 VSFATSSTDNMIYVCKIGENR-----------------------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 346 (490)
..+++++-|.+|++||+..-+ .-..+.||...|+-++|+|.-.+|+||++|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 778899999999999985310 113567999999999999999999999999
Q ss_pred CeEEEEecCCCce--eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEE
Q 011224 347 VTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424 (490)
Q Consensus 347 g~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 424 (490)
..|++|.++..+. +-+.++|...|.++-|+|... +++|.|.|++||+||+...+.+.++....+.-+.|
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~---------lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD---------LILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccc---------eeEecCCCccEEEEecccccceeeeeccCCeEEEE
Confidence 9999999876543 567889999999999999653 78899999999999999999999998777888999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcC
Q 011224 425 AFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 425 ~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
+-+|..+++|+| +|+-+.||.+.
T Consensus 299 aahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 299 AAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred EecCCcceeeee-cCCceEEEEEc
Confidence 999999877765 56667777665
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.7e-33 Score=246.10 Aligned_cols=274 Identities=30% Similarity=0.511 Sum_probs=229.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCC---EEEEEeCCCeEEEEEccCcce
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD---YLLTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~---~l~s~s~D~~v~iwd~~~~~~ 276 (490)
|..-|.++... +.++++|++||.+++|+..|....++.+|.++|.+++|.-.+. .|+++|.|.++++|-.+.++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 34456665555 6899999999999999999999999999999999998865443 599999999999998876653
Q ss_pred e----EeeeeeccCeEEEEc-cCCceEEEEcCCCeEEEEEcCC-------------------------CcceeEecCCCC
Q 011224 277 K----QQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGE-------------------------NRPIKTFAGHQG 326 (490)
Q Consensus 277 ~----~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~-------------------------~~~~~~~~~h~~ 326 (490)
+ ....+|..+|-++.. ....+|++++-|.++.+|+... ..|+..+.||..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 2 233488889988885 5678999999999999999221 236778899999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 406 (490)
+|.+|.|++ ...+.+++.|.+|+.||+.+++.+.++.. ...+.++.++|... +|++|+.|..||+||.+
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~---------Ll~~gssdr~irl~DPR 330 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK---------LLASGSSDRHIRLWDPR 330 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc---------eeeecCCCCceeecCCC
Confidence 999999997 66788999999999999999998877654 46789999998764 89999999999999998
Q ss_pred CCe---EEEEeeCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCe-EEEEEecC-CCEEEEEECCCCCEEEEEECC
Q 011224 407 LGK---LLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGK-IVKTYTGN-GGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 407 ~~~---~~~~~~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iw~~~~~~-~~~~~~~~-~~v~~~~~~~~g~~la~~~~d 480 (490)
++. ..+++.+|...|.++.|+|... .|++|+.|+++++||++.-+ .+..+.++ ..|.++.|+.. ..+++|+.|
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD 409 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGAD 409 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCc
Confidence 763 4578999999999999999774 57899999999999999876 56666554 56999999754 589999999
Q ss_pred CcEEEEE
Q 011224 481 HTVCVLD 487 (490)
Q Consensus 481 ~~v~v~~ 487 (490)
.+|+++-
T Consensus 410 ~~l~i~~ 416 (423)
T KOG0313|consen 410 NKLRIFK 416 (423)
T ss_pred ceEEEec
Confidence 9999873
No 57
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=3.1e-33 Score=278.09 Aligned_cols=294 Identities=27% Similarity=0.459 Sum_probs=233.1
Q ss_pred cccceeEEEECCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEE
Q 011224 141 HTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 218 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs--~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 218 (490)
+...|++++.||+|..++||| .|+.++||....-- ........+ +.........|.+.|.|+.|++||++||+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeecccccc--chhhhhhcc---cchhheeeccccCceeEEEECCCCCeEee
Confidence 456799999999999999999 99999999864211 000000000 11112223456889999999999999999
Q ss_pred EeCCCeEEEEECCC-------------------ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 219 GSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 219 g~~dg~i~iw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
|+.|+.|.||.... .....+.+|.+.|..++|+|++.+|+++|.|++|.|||.++.+.
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~--- 163 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL--- 163 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee---
Confidence 99999999998651 13457889999999999999999999999999999999876532
Q ss_pred eeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 280 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
+..+.+|.+.|-.+.|.|-|++||+-+.|++|+||++.....
T Consensus 164 --------------------------------------~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 164 --------------------------------------LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred --------------------------------------eeeeecccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence 356778999999999999999999999999999999877666
Q ss_pred eeeecccc------ccEEEEEEcCCCCCCCCCCCcEEEEEEE----CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCC
Q 011224 360 VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 360 ~~~~~~~~------~~i~~v~~~p~g~~~~~~~~~~~l~sgs----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 429 (490)
.+.+..+- ..++.+.|+|+|. +|++.- .-.++.|.+-.+.+.-..+-||..++.+++|+|.
T Consensus 206 ~k~It~pf~~~~~~T~f~RlSWSPDG~---------~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 206 EKSITKPFEESPLTTFFLRLSWSPDGH---------HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred eEeeccchhhCCCcceeeecccCCCcC---------eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 66655432 3467899999997 455432 2346888887777777889999999999999972
Q ss_pred ------C-------C----EEEEEeCCCcEEEEEcCCCeEEEEEe--cCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 430 ------G-------E----YLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 430 ------g-------~----~l~s~s~dg~i~iw~~~~~~~~~~~~--~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
. . .+|+||.|++|-||.....+.+.... .+..|.+++|+|||-.|.+|+.||+|.++.|.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 1 1 57899999999999987666544332 25679999999999999999999999999874
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-33 Score=251.31 Aligned_cols=280 Identities=24% Similarity=0.404 Sum_probs=232.9
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 273 (490)
..|...|..+.||++|+||||++.|.+..||.+.. +...++.+|..+|..+.|+|+.++|++|+.|..+++||+.+
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 35678899999999999999999999999998643 34568899999999999999999999999999999999999
Q ss_pred cceeEeeeee-ccCeEEEEc-cCCceEEEEcCCCeEEEEEcCCCcceeEecCCC-CCeeEEEEcCCCCEEEEEeCCCeEE
Q 011224 274 EEWKQQFEFH-SGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAK 350 (490)
Q Consensus 274 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~dg~i~ 350 (490)
+.....+... ...+.+..| .+..+|++|+.|+.+..|++..+. ...+.+-. ..|.+++..+||+++++.+.|..|+
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred chhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEeccccee
Confidence 9987777544 445666677 456789999999999999997654 22333332 3588999999999999999999999
Q ss_pred EEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCC--EEEEEECC
Q 011224 351 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSP 428 (490)
Q Consensus 351 iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~sp 428 (490)
+++..+...+. +.....+|+++..|.++. ++++.-.+..|++||+...+.+..+.||+.. |-.-+|.-
T Consensus 380 l~~~e~~~dr~-lise~~~its~~iS~d~k---------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 380 LYNREARVDRG-LISEEQPITSFSISKDGK---------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred eechhhhhhhc-cccccCceeEEEEcCCCc---------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 99986654433 233456899999999886 6666778899999999988888888888754 33345643
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC-EEEEEECCCC-CEEEEEECCCcEEEEEe
Q 011224 429 -TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEG-DKIAACFANHTVCVLDF 488 (490)
Q Consensus 429 -dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-v~~~~~~~~g-~~la~~~~d~~v~v~~~ 488 (490)
+..++|+||.|+.|+||+..+|+++.++.||.. |++++|+|.. .++|+|+.||+|++|..
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 448999999999999999999999999999865 9999999976 48899999999999964
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.8e-32 Score=231.04 Aligned_cols=277 Identities=24% Similarity=0.445 Sum_probs=233.5
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCC
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT 214 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~ 214 (490)
..+++|...|.+++|+.+|..|++|+.|+++++|++...... ......+|...|-.++|+| ...
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCCc
Confidence 457789999999999999999999999999999998654211 1122345677899999987 567
Q ss_pred EEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
.|++++.|.+|++||.... ....+.. ++.-.-+.|+|+|.+++.++.|..|.+.|.++.+....+++... +..+.|.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e-~ne~~w~ 156 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFE-VNEISWN 156 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccce-eeeeeec
Confidence 9999999999999997644 4434433 34445678999999999999999999999998877665544332 3445553
Q ss_pred -CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 294 -NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 294 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
.+..|+.....|.|.+.....-+|++.+..|.....|+.|+|+|++||+|+.|..+.+||+..--+++.+.-+.-+|.+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT 236 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence 4556777777899999999999999999999999999999999999999999999999999998888999889999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
+.|+.+|. +||+||.|-.|-|=++.+|..++.+. +.++-..|+|+|...+||-+..|
T Consensus 237 lSFS~dg~---------~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 237 LSFSHDGR---------MLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEeccCcc---------eeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999997 89999999999999999999999998 78999999999999999977665
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.1e-32 Score=267.04 Aligned_cols=271 Identities=30% Similarity=0.513 Sum_probs=241.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEE-ecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeE
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 278 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 278 (490)
...+.+..|+ ..++++++.+++|++|+... ..... +.+|.+.|++++|...+..|++|+.|+++++||..++.+..
T Consensus 208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~ 285 (537)
T KOG0274|consen 208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH 285 (537)
T ss_pred cchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE
Confidence 4567888888 66899999999999999754 44444 89999999999998878899999999999999999999999
Q ss_pred eeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q 011224 279 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~ 358 (490)
.+.+|...+.+++... ..+++++.|.+|++|++.++..+..+.+|.++|+++.++ +.++++|+.|++|++||+.+++
T Consensus 286 ~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 286 SLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred EecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhce
Confidence 9999999888777543 345668999999999999999999999999999999997 8899999999999999999999
Q ss_pred eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEe
Q 011224 359 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 359 ~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s 437 (490)
+++++.+|...|+++.+.+. . .+++|+.|++|++||+++. +++.++.+|..-|..+.+ .+++|++++
T Consensus 363 cl~sl~gH~~~V~sl~~~~~-~---------~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~ 430 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE-N---------RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSS 430 (537)
T ss_pred eeeeecCCcceEEEEEecCc-c---------eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecc
Confidence 99999999999999988663 1 6899999999999999999 999999999998877765 567999999
Q ss_pred CCCcEEEEEcCCCeEEEEEecC--CCEEEEEECCCCCEEEEEECCCcEEEEEeeC
Q 011224 438 LDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 438 ~dg~i~iw~~~~~~~~~~~~~~--~~v~~~~~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
.|++|++||..+++.++++.+. +.|..+++. -..+++++.++++.+||+|+
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 9999999999999999999873 678888876 46788889999999999984
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-31 Score=225.97 Aligned_cols=280 Identities=24% Similarity=0.392 Sum_probs=231.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC-CCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
+|..+++.+.|+.+|.+|++++.|.++.||-. +++.+-++.+|+++|+++....+..++++|+.|.++++||+.+++.+
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL 87 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE
Confidence 46788999999999999999999999999975 88888999999999999999999999999999999999999999988
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcC------CCeEEEEEcC-------CCcceeEecCCCCCeeEEEEcCCCCEEEEEe
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSST------DNMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 344 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~~~~~~-------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 344 (490)
.++.. ..++..++|.....++..+. .+.|.+++++ ...|+..+..+...++.+-|.|-+++|++|.
T Consensus 88 a~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 88 ATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 87764 34566677754433333322 3468888887 4557777888889999999999999999999
Q ss_pred CCCeEEEEecCCCc-eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEE
Q 011224 345 DDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 423 (490)
Q Consensus 345 ~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 423 (490)
.||.|.+||+++++ .+...+.|...|..++++|+.. +++++|.|.+-++||.++..++.++. ...||++
T Consensus 167 e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T---------~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~ 236 (327)
T KOG0643|consen 167 EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT---------YFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNT 236 (327)
T ss_pred CCCcEEEEEcccCceeeechhhhccccccccccCCcc---------eEEecccCccceeeeccceeeEEEee-ecccccc
Confidence 99999999999974 4566678999999999999986 89999999999999999999988887 4679999
Q ss_pred EEECCCCCEEEEEeCCCc--EEEEEcCCCeE------------EEEEec-CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 424 LAFSPTGEYLASGSLDKS--MHIWSLKEGKI------------VKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 424 l~~spdg~~l~s~s~dg~--i~iw~~~~~~~------------~~~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.+++|--.+++.||.... |.-=..+.|+. +..+.+ -++|++++|||+|+..++|+.||.|++..|
T Consensus 237 aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 237 AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 999998888777664432 22222233432 222333 367999999999999999999999999877
Q ss_pred e
Q 011224 489 R 489 (490)
Q Consensus 489 ~ 489 (490)
.
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 5
No 62
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=257.42 Aligned_cols=244 Identities=22% Similarity=0.395 Sum_probs=225.5
Q ss_pred EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCC
Q 011224 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGEN 315 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~ 315 (490)
.+..+...|.++.|||...+++++-..|.|.|||.++...++.+....-|+.+..|. ...-++++++|..|++++..+.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 456688999999999999999999999999999999999999999888888887775 4556789999999999999999
Q ss_pred cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC-ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
..+..|..|...|.|++.||...+++|+|+|.+|++||+..+ .+.+++.+|..-|++++|.|... ..+||+
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------ntFaS~ 159 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------NTFASA 159 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------cceeee
Confidence 999999999999999999999999999999999999999754 67889999999999999999764 368999
Q ss_pred ECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCC
Q 011224 395 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEG 471 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg--~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g 471 (490)
|-|++|++|.+....+.+++.+|...|++|.|-+-| +||+||++|.+|+|||..+..+++++.+|. .|..++|+|.=
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 999999999999999999999999999999997744 799999999999999999999999999876 49999999999
Q ss_pred CEEEEEECCCcEEEEEe
Q 011224 472 DKIAACFANHTVCVLDF 488 (490)
Q Consensus 472 ~~la~~~~d~~v~v~~~ 488 (490)
.++++|+.||+|++|+-
T Consensus 240 piiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNS 256 (794)
T ss_pred cEEEEecCCccEEEecC
Confidence 99999999999999984
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=266.24 Aligned_cols=292 Identities=21% Similarity=0.369 Sum_probs=207.2
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEE--EcCCCCEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD--WNGEGTLLA 217 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~s~~~~~l~ 217 (490)
+|.+.|.|+.||+||+||||||.|+.|+||.+...............++. .... .....++..-. ........-
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~--~~~~--~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYF--EYNA--NSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhh--hhhh--ccccCccccccccccccccccc
Confidence 79999999999999999999999999999998653221100000000000 0000 00000010000 000011111
Q ss_pred EEeCCCeEEE----EECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 218 TGSYDGQARI----WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 218 sg~~dg~i~i----w~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
.+.....+.+ +-....+.+.+.+|.+.|..|.|+.+ ++|+++|+|+|||+|++...+++..|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F------------- 406 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF------------- 406 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-------------
Confidence 1222222222 22334567789999999999999976 58999999999999999876655433
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
.|...|+||+|+| |.+||++|+-||.||||++...+.+.-. ....-|++
T Consensus 407 -----------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITA 456 (712)
T KOG0283|consen 407 -----------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITA 456 (712)
T ss_pred -----------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhhee
Confidence 3888999999999 6789999999999999999877665433 33478999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee--CC------CCCEEEEEECCCCC-EEEEEeCCCcEE
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GH------REPVYSLAFSPTGE-YLASGSLDKSMH 443 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h------~~~v~~l~~spdg~-~l~s~s~dg~i~ 443 (490)
++|.|+|. +.+.|+.+|.+++|+....+...... -| ...|+.+.|.|... .|++.+.|..|+
T Consensus 457 vcy~PdGk---------~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR 527 (712)
T KOG0283|consen 457 VCYSPDGK---------GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR 527 (712)
T ss_pred EEeccCCc---------eEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence 99999997 67889999999999998777654432 11 12799999998643 456668899999
Q ss_pred EEEcCCCeEEEEEecCC---CEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 444 IWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~~---~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
|||.++..++..|.+.. .=...+|+.||++|++++.|..|+||+.
T Consensus 528 I~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 528 IYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred EEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 99998888887776532 2356789999999999999999999986
No 64
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-32 Score=228.67 Aligned_cols=275 Identities=23% Similarity=0.393 Sum_probs=223.1
Q ss_pred EEEEEcC-CCCEEEEE-------eCCCeEEEEECCC-ceeE--EecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEcc
Q 011224 205 TTLDWNG-EGTLLATG-------SYDGQARIWSTNG-DLKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 205 ~~~~~s~-~~~~l~sg-------~~dg~i~iw~~~~-~~~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~ 272 (490)
.++.||| -.++|+.+ ...|.+.|-+... .-+. ....-.+.++.++|++.. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4677887 12233332 2357888888752 2222 222346789999999865 678999999999999964
Q ss_pred C-cceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEEEEEeCCCe
Q 011224 273 T-EEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVT 348 (490)
Q Consensus 273 ~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~ 348 (490)
. ...+..+..|...|.+++|. ....+++++-|++|++|+...+..+.+|.||...|...+|+|. .++++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 3 34667788899999999995 4567889999999999999999999999999999999999995 678999999999
Q ss_pred EEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEEC
Q 011224 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFS 427 (490)
Q Consensus 349 i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~s 427 (490)
+++||++.......+..|...+.++.|+.-.. ++|+||+.|+.||+||+++- .++.++.+|.-.|..|.||
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCC--------cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 99999986544444888999999999986543 58999999999999999865 4688999999999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEEcCCCe-EEEEEecCCC-EEEEEECC-CCCEEEEEECCCcEEEEE
Q 011224 428 PTG-EYLASGSLDKSMHIWSLKEGK-IVKTYTGNGG-IFEVCWNK-EGDKIAACFANHTVCVLD 487 (490)
Q Consensus 428 pdg-~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~~-v~~~~~~~-~g~~la~~~~d~~v~v~~ 487 (490)
|.. ..||++|.|-+++||+...+. ++.++..+.. +..+.||+ ++.++|.++.|+.+.||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 975 689999999999999998543 4555555554 77899998 567999999999999997
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=2.6e-31 Score=261.45 Aligned_cols=285 Identities=29% Similarity=0.478 Sum_probs=248.3
Q ss_pred eccc-cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 137 ILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 137 ~l~~-H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
.+.+ |...|.+..|+ +.++++++.|++|++|+..++. .......+|.+.|.++++..-+.+
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~----------------~i~~~l~GH~g~V~~l~~~~~~~~ 263 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY----------------LILTRLVGHFGGVWGLAFPSGGDK 263 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccce----------------EEEeeccCCCCCceeEEEecCCCE
Confidence 3444 56778888888 7789999999999999986543 122234567889999999988899
Q ss_pred EEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 216 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
+++|+.|.+++|||.. +...+++.+|++.|.++...+ ..+++||.|.+|++|++.++.++..+..|.++|.++...
T Consensus 264 lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 9999999999999965 567789999999999987654 578889999999999999999999999999999999987
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC-ceeeeeccccccEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTI 373 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v 373 (490)
...+++++.|++|.+|+..+.+++..+.||.+.|.++.+.+. ..+++|+.|++|++||+.+. +++.++..|...+..+
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL 419 (537)
T ss_pred CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence 667888899999999999999999999999999999988655 88999999999999999999 9999999999888766
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
.+... +|++++.|++|++||...++++..+.+ |...|+.+++. ...+++++.||++++||++++++
T Consensus 420 ~~~~~-----------~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 420 LLRDN-----------FLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred ccccc-----------eeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 65332 789999999999999999999999998 77889999887 46788999999999999999988
Q ss_pred EEEE
Q 011224 453 VKTY 456 (490)
Q Consensus 453 ~~~~ 456 (490)
...+
T Consensus 487 ~~~l 490 (537)
T KOG0274|consen 487 IRTL 490 (537)
T ss_pred hhhh
Confidence 7655
No 66
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7e-33 Score=243.57 Aligned_cols=280 Identities=23% Similarity=0.367 Sum_probs=219.7
Q ss_pred eeccccccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 136 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
..|.||.++|.|++=+|.. ..+|||+.||.|+|||+..-.+. +. ...|.+.|..+++.. .
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-------------~~----f~AH~G~V~Gi~v~~--~ 120 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-------------RT----FKAHEGLVRGICVTQ--T 120 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-------------he----eecccCceeeEEecc--c
Confidence 4578999999999999986 78999999999999998753321 11 223456788887776 5
Q ss_pred EEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 215 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
.++++|.|.+|+.|..++....++.+ .+.++++.-+..++.++||+. .|-|||.+..
T Consensus 121 ~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~-------------------- 177 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD-------------------- 177 (433)
T ss_pred ceEEecCCcceeeeeccCCcceeeec-cccccccccccccccccccCc--eeeecccccC--------------------
Confidence 67788888888888877765555543 345666766666677777765 4677776433
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
.|+..+.-....|.++.|+|... +|++|+.|+.|.|||+++..+++.+.. .-....|
T Consensus 178 ---------------------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~I 235 (433)
T KOG0268|consen 178 ---------------------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTI 235 (433)
T ss_pred ---------------------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccce
Confidence 33444444455688999999875 567888999999999999988776543 2234678
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
+|+|.+. .+.+|+.|.+++.||++.. .++....+|...|.++.|||.|+-+++||.|.+|+||.+..+..
T Consensus 236 swnPeaf---------nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 236 CWNPEAF---------NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ecCcccc---------ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 9999543 5889999999999999864 46777889999999999999999999999999999999998887
Q ss_pred EEEEec--CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 453 VKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 453 ~~~~~~--~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
-.++.. ...|.++.||.|.+++++|+.|+.|++|-.
T Consensus 307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 307 RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 666643 456999999999999999999999999965
No 67
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-29 Score=209.52 Aligned_cols=297 Identities=25% Similarity=0.368 Sum_probs=237.3
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
.+..|++++|+|.|.+.+.||...+.+|-....-.........+........ .+...|.+.|.|.+|||+|.++++|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~--kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC--KRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe--eeccccCccEEEEEecCccCeEEecC
Confidence 4567999999999999999999999998765432211111111111111111 11223567899999999999999999
Q ss_pred CCCeEEEEECCC------ceeEEecCCCCCEEEEEecCC----CCEEEEEe-CCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 221 YDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKK----GDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 221 ~dg~i~iw~~~~------~~~~~~~~h~~~V~~l~~~~~----~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
.|.+|++.-.+. .....+.-|.+.|..++|-.+ +..|++++ .|..|.+-|..+++-.+.+..|.+.++.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 999999976543 233467789999999999643 34566554 4667777788888888899999999999
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecC--C-----CCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--H-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 362 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h-----~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 362 (490)
+..-++..|++++.|.+|++||++-+..+.++.. | ...|.+++..|.|++|++|..|....+||++.+++++.
T Consensus 189 lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~ 268 (350)
T KOG0641|consen 189 LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQR 268 (350)
T ss_pred EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeee
Confidence 8777888999999999999999998888877642 2 24689999999999999999999999999999999999
Q ss_pred eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC----eEEEEeeCCCCCEEEEEECCCCCEEEEEeC
Q 011224 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 363 ~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
+..|...|.++.|+|... ||++|+.|..|++-|+.-. -.+..+..|...+..+.|+|..--+++.|.
T Consensus 269 f~phsadir~vrfsp~a~---------yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa 339 (350)
T KOG0641|consen 269 FHPHSADIRCVRFSPGAH---------YLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA 339 (350)
T ss_pred eCCCccceeEEEeCCCce---------EEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC
Confidence 999999999999999763 8999999999999998632 234556679999999999999988899999
Q ss_pred CCcEEEEEcC
Q 011224 439 DKSMHIWSLK 448 (490)
Q Consensus 439 dg~i~iw~~~ 448 (490)
|.++.+|-+.
T Consensus 340 dkt~tlwa~~ 349 (350)
T KOG0641|consen 340 DKTATLWALN 349 (350)
T ss_pred cceEEEeccC
Confidence 9999999763
No 68
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.3e-31 Score=249.55 Aligned_cols=335 Identities=23% Similarity=0.409 Sum_probs=266.5
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
+++.||.+.|+++.|+|.+..|+|+|.|.++.+|...+..- +.+.. ...+...+....-....|+|+++.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG--------iWv~~--vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG--------IWVDV--VRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccc--------eEEEE--EEeecccccccceeeEEEcCCCCE
Confidence 45679999999999999999999999999999998654321 11111 122333344566888999999999
Q ss_pred EEEEeCCCeEEEEECCC----ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC--cceeE--eeeeeccCe
Q 011224 216 LATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EEWKQ--QFEFHSGPT 287 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~~--~~~~~~~~~ 287 (490)
+++-++.|..++|.... .....+.||.+.|..+.|+|.|.+|++.|.|.|-|++-.-. .+|.. ..+.|....
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 99999999999998433 23346789999999999999999999999999999996541 12222 334566778
Q ss_pred EEEEccC-CceEEEEcCCCeEEEEEcCCC--------------------------------cc-----------------
Q 011224 288 LDVDWRN-NVSFATSSTDNMIYVCKIGEN--------------------------------RP----------------- 317 (490)
Q Consensus 288 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~--------------------------------~~----------------- 317 (490)
.++.+.+ +.+|+++.+.+.+++++.... ++
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 8888877 888999998888888774210 00
Q ss_pred ---------------------------eeEecCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEEecCCCceeeeecc
Q 011224 318 ---------------------------IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 318 ---------------------------~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~ 365 (490)
+..+.||..+|.|++.+|+++++||++... .|++|+..+...++.+..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 012458999999999999999999998754 589999999988899999
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE----EEEeeCCCCCEEEEEECCCCCEEEEEeCCCc
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKS 441 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~ 441 (490)
|.-.|+.++|||++. +|++.|.|.++.+|....... ....+.|+.-|++..|+|++.++||+|.|++
T Consensus 571 HsLTVT~l~FSpdg~---------~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGR---------YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred cceEEEEEEECCCCc---------EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence 999999999999997 899999999999998753321 2336789999999999999999999999999
Q ss_pred EEEEEcCCC--eEEE---EEecCCCEEEEEECCC-----CCEEEEEECCCcEEEEEee
Q 011224 442 MHIWSLKEG--KIVK---TYTGNGGIFEVCWNKE-----GDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 442 i~iw~~~~~--~~~~---~~~~~~~v~~~~~~~~-----g~~la~~~~d~~v~v~~~~ 489 (490)
|++|...+. +.+. .......|++++|.|- +..+|.|...|.|.||.+.
T Consensus 642 VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 999999877 3322 2334557899998873 3478999999999999864
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=225.19 Aligned_cols=279 Identities=23% Similarity=0.400 Sum_probs=226.5
Q ss_pred eEEEECCC-CCEEEEE-------ECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC-CCEE
Q 011224 146 CACAWSPA-GSLLASG-------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLL 216 (490)
Q Consensus 146 ~~~~~sp~-~~~l~sg-------s~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l 216 (490)
.++.|||- ..+||.+ ...|.+.|-++..+..+ . ....+ .-...+..++|++. ...+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi--------~--e~~s~-----d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI--------Q--ECQSY-----DTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe--------E--EEEee-----ecccceeEeeecCCCcceE
Confidence 57889994 3333332 24678888887533211 1 11111 12467899999985 5788
Q ss_pred EEEeCCCeEEEEECCC--ceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 217 ATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
++++.||.++|||+.. .++..++.|+..|+++.|++.. ..++++|.|++||+|+.....-+++|..|...+....|.
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 9999999999999643 4566788999999999999854 457888999999999999999999999999999998886
Q ss_pred C--CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCc-eeeeecccccc
Q 011224 294 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKE 369 (490)
Q Consensus 294 ~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~ 369 (490)
+ ...|++++.|+++++||++.......+..|..+|.|+.|+. +...++||+.|+.|++||++.-+ ++..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 4 56899999999999999987655556889999999999986 45678999999999999998754 57788899999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCC-CCEEEEEeCCCcEEEEEc
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iw~~ 447 (490)
|..++|||... .+|||++.|=++||||...+ ..+.+...|+..|..+.||+- +.++|+++.|..++||+.
T Consensus 237 VRkvk~Sph~~--------~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 237 VRKVKFSPHHA--------SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEEEecCcchh--------hHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999865 38999999999999998744 455667789999999999984 679999999999999984
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-31 Score=250.46 Aligned_cols=272 Identities=24% Similarity=0.452 Sum_probs=233.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCceeE-EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee-
Q 011224 205 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF- 282 (490)
Q Consensus 205 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~- 282 (490)
.-++|+. .+.|+.|. ...|++|+.....+. ....+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+..
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 3467884 45566654 458999997655433 3333489999999999999999999999999999999888888888
Q ss_pred eccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeE-ecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee
Q 011224 283 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 361 (490)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 361 (490)
|...+.++.|. ...+.+++.++.|..++++....+.. +.+|...|+.++|++|+.++|+|+.|+.+.|||.....+..
T Consensus 259 h~~rvg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 259 HASRVGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred cCceeEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 88999999998 66678899999999999988766555 88999999999999999999999999999999998888889
Q ss_pred eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE--CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE--e
Q 011224 362 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--S 437 (490)
Q Consensus 362 ~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~--s 437 (490)
.+..|...|.+++|+|...+ +||+|+ .|++|++||+.++..+..+.. ...|.+|.|++..+-|+++ -
T Consensus 338 ~~~~H~aAVKA~awcP~q~~--------lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSG--------LLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred EEeccceeeeEeeeCCCccC--------ceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCC
Confidence 99999999999999998653 788864 699999999999999988774 4679999999998666653 3
Q ss_pred CCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 438 LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 438 ~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.++.|.||+..+.+++..+.+|. .|..++|+|||..+++|+.|.++++|++
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 56799999999988888887765 5999999999999999999999999986
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-31 Score=241.96 Aligned_cols=275 Identities=21% Similarity=0.367 Sum_probs=233.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCce-eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
...|++++|||...+=+.....-.+.||+..+.. ...+...+..|+++.|..+|..|++|...|.|+++|..+......
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 4679999999965432222233578889876543 345677788999999999999999999999999999887777888
Q ss_pred eeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCC
Q 011224 280 FEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~ 356 (490)
+..|+.|+..+.|. ++..|+++++|+.+.+|++.+...+..+.+|+..|.|.+|+|-. .+++|||.||+||+||++.
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 89999999888875 56788999999999999999988766889999999999999965 5789999999999999988
Q ss_pred C-ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEeeCCCCCEEEEEECCCCCEEE
Q 011224 357 D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPTGEYLA 434 (490)
Q Consensus 357 ~-~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~ 434 (490)
. ..+.++ .|..+|-.+.+-|.|. ++++++. ..|++||+-+|. .+..+..|...|+|+++..++..|+
T Consensus 186 ~~~~v~el-nhg~pVe~vl~lpsgs---------~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 186 LTSRVVEL-NHGCPVESVLALPSGS---------LIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred CCceeEEe-cCCCceeeEEEcCCCC---------EEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 7 445554 5888999999999886 6777764 579999998654 4455555999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 435 SGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 435 s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+||.|+.|++|++.+.+++..+.-.++|.+++.+|+++.+++|..||.+.+-
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 9999999999999999999999888999999999999999999999987653
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.2e-30 Score=274.66 Aligned_cols=240 Identities=21% Similarity=0.354 Sum_probs=200.5
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc---------eeEEecCCCCCEEEEEecCC-CCEEEEEeCCCeE
Q 011224 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTA 266 (490)
Q Consensus 197 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v 266 (490)
...|...|.+++|+|+|++|++|+.|+.|+||+.... ....+. +...|.+++|+|. +.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3446788999999999999999999999999996431 112222 3467899999874 6789999999999
Q ss_pred EEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeC
Q 011224 267 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSD 345 (490)
Q Consensus 267 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~ 345 (490)
++||+.++.. +..+.+|.+.|++++|+| ++.+|++|+.
T Consensus 558 ~lWd~~~~~~-----------------------------------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 558 QVWDVARSQL-----------------------------------------VTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred EEEECCCCeE-----------------------------------------EEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 9999876532 234567999999999997 7899999999
Q ss_pred CCeEEEEecCCCceeeeeccccccEEEEEEcC-CCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEeeCCCCCEEE
Q 011224 346 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYS 423 (490)
Q Consensus 346 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~ 423 (490)
||+|++||++++..+..+..+ ..+.++.|.+ ++. +|++|+.||.|++||+++.+ .+..+.+|...|++
T Consensus 597 Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~---------~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~ 666 (793)
T PLN00181 597 DGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGR---------SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSY 666 (793)
T ss_pred CCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCC---------EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEE
Confidence 999999999999888877654 5788999954 443 79999999999999998765 56778899999999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCC------eEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 424 LAFSPTGEYLASGSLDKSMHIWSLKEG------KIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 424 l~~spdg~~l~s~s~dg~i~iw~~~~~------~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.|. ++.+|++++.|++|+|||+..+ +.+..+.++. .+..++|+|+|.+||+|+.|++|.||+..
T Consensus 667 v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 667 VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 9997 7889999999999999999743 5567777654 47899999999999999999999999853
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.1e-32 Score=227.35 Aligned_cols=281 Identities=25% Similarity=0.415 Sum_probs=237.6
Q ss_pred eccccccceeEEEECC---CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 137 ILEGHTSEVCACAWSP---AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp---~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
+..||+.+|-.++||| +|-+|.|++.|+.-.+-+=.+|.. .+...+|.+.|+......+.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-----------------igtfeghkgavw~~~l~~na 71 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-----------------IGTFEGHKGAVWSATLNKNA 71 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-----------------EEeeeccCcceeeeecCchh
Confidence 5679999999999997 678999999999766554444332 23344567899999999999
Q ss_pred CEEEEEeCCCeEEEEEC-CCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 214 TLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
...++++.|-+.+|||. .+..+..| .|+--|.+++|+.+.++|++|+.++.+||||++..+
T Consensus 72 ~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~----------------- 133 (334)
T KOG0278|consen 72 TRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK----------------- 133 (334)
T ss_pred hhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCC-----------------
Confidence 99999999999999995 44555555 488889999999999999999999999999986532
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
.|...+.+|.+.|..+-|....+.|++.+.|++||+||.+++..++++.. ..+|.+
T Consensus 134 -----------------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtS 189 (334)
T KOG0278|consen 134 -----------------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTS 189 (334)
T ss_pred -----------------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcc
Confidence 34567889999999999998889999999999999999999999988864 467899
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
+..+++|. +++-...+.|++||..+..++..++ -...|.+.+.+|+..++++|+.|..++.||..+|.-
T Consensus 190 lEvs~dG~----------ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 190 LEVSQDGR----------ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred eeeccCCC----------EEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCce
Confidence 99999996 4566667899999999888877665 234589999999999999999999999999999988
Q ss_pred EEEE-ec-CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 453 VKTY-TG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 453 ~~~~-~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+..+ .+ .++|.++.|+|+|...|+|+.||+|++|-
T Consensus 259 i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 259 IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred eeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 7776 33 56799999999999999999999999994
No 74
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3e-30 Score=253.72 Aligned_cols=276 Identities=17% Similarity=0.226 Sum_probs=208.1
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCC-CCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCCEEEE
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG-AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLAT 218 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l~s 218 (490)
|-..|+...+++++..+++++.+..+..|+...+..... ...+.+. .......+|.+.|++++|+| ++++|++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-----~~~~~l~GH~~~V~~v~fsP~d~~~LaS 93 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-----SNPPILLGQEGPIIDVAFNPFDPQKLFT 93 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC-----CCCceEeCCCCCEEEEEEcCCCCCEEEE
Confidence 455677778888988889999999999998654321100 0000000 00011235788999999999 8899999
Q ss_pred EeCCCeEEEEECCCc--------eeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 219 GSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 219 g~~dg~i~iw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
|+.|++|+||++... ....+.+|...|.+++|+|.+ ++|++|+.|++|+|||+.++..
T Consensus 94 gS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~------------- 160 (493)
T PTZ00421 94 ASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA------------- 160 (493)
T ss_pred EeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-------------
Confidence 999999999997532 345788999999999999986 6899999999999999976542
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 369 (490)
+..+.+|...|.+++|+|+|.+|++|+.|++|+|||+++++.+..+..|...
T Consensus 161 ----------------------------~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 161 ----------------------------VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred ----------------------------EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 2345678889999999999999999999999999999999998888888754
Q ss_pred -EEEEEEcCCCCCCCCCCCcEEEEEE---ECCCcEEEEeCCCCe-EEEEeeCC-CCCEEEEEECCCCCEEEEEe-CCCcE
Q 011224 370 -IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGK-LLYSLNGH-REPVYSLAFSPTGEYLASGS-LDKSM 442 (490)
Q Consensus 370 -i~~v~~~p~g~~~~~~~~~~~l~sg---s~dg~i~iwd~~~~~-~~~~~~~h-~~~v~~l~~spdg~~l~s~s-~dg~i 442 (490)
...+.|.+++. .++.+| +.|+.|++||+++.. .+.....+ ...+....|++++++|++|+ .|+.|
T Consensus 213 ~~~~~~w~~~~~--------~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 213 KSQRCLWAKRKD--------LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred cceEEEEcCCCC--------eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 34677887653 244434 348999999998754 33333322 34566678999999999887 59999
Q ss_pred EEEEcCCCeEEEEEec--CCCEEEEEECCC
Q 011224 443 HIWSLKEGKIVKTYTG--NGGIFEVCWNKE 470 (490)
Q Consensus 443 ~iw~~~~~~~~~~~~~--~~~v~~~~~~~~ 470 (490)
++|++.+++++..+.. ......++|.|.
T Consensus 285 riwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 285 RCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 9999999987765533 234567777775
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=228.45 Aligned_cols=307 Identities=22% Similarity=0.370 Sum_probs=234.5
Q ss_pred CCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCC---------CCCCCCCCceeEEEEeeecccccCC
Q 011224 131 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTS---------NGGAQNGPLNVLVLKHVKGRTNEKS 201 (490)
Q Consensus 131 ~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (490)
+.-....+..|+.++++.+|||||.++||||.|..|+|.|++..-. ....+..| .++.+ -.|.
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hP----vIRTl----YDH~ 172 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHP----VIRTL----YDHV 172 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCc----eEeeh----hhcc
Confidence 3344567889999999999999999999999999999999873210 01111111 22222 3467
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcee---EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeE
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 278 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 278 (490)
..|.++.|+|....|++|+.|++|+++|...... .....-..+|.++.|+|.|.+|+.|..--++++||+++.++..
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 8899999999999999999999999999764211 1112345689999999999999999999999999999877543
Q ss_pred e---eeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEec-CCCC-CeeEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 279 Q---FEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQG-EVNCVKWDPTGSLLASCSDDVTAKIW 352 (490)
Q Consensus 279 ~---~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~-~v~~v~~~~~~~~l~s~~~dg~i~iw 352 (490)
. -..|.+.+.++.+.. ...+++++.||.|++||--.++++.++. .|.+ .|++..|..+|++|++.+.|..+++|
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 2 245778899999865 5677999999999999988888888875 4654 79999999999999999999999999
Q ss_pred ecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCCEEEEEECCCCC
Q 011224 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGE 431 (490)
Q Consensus 353 d~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg~ 431 (490)
.+.+++++....+....-. .. .......+....++|.---..+.+.-||.++...+.-+ -+|.+++..+.-||.+.
T Consensus 333 Ei~t~R~l~~YtGAg~tgr-q~--~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGR-QK--HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred eecCCceEEEEecCCcccc-hh--hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 9999999888765421100 00 00111222233445555445678899999987654332 47999999999999999
Q ss_pred EEEEEeCCCcEEEEEcC
Q 011224 432 YLASGSLDKSMHIWSLK 448 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~ 448 (490)
-+.|||.|..+++|-.+
T Consensus 410 ~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYRR 426 (430)
T ss_pred ceeeecccceeeeeeec
Confidence 99999999999999643
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-29 Score=218.16 Aligned_cols=278 Identities=22% Similarity=0.337 Sum_probs=222.4
Q ss_pred ccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 138 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
++.-.+.|+++.|+++|.+|++++.|.+++|||..+++.... + ..+...|..++|......++
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t-------------i----~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT-------------I----NSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE-------------e----ecccccccEEEEecCCceEE
Confidence 334567899999999999999999999999999988753221 1 12234577788877767777
Q ss_pred EEeC--CCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 218 TGSY--DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 218 sg~~--dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
.++. |.+||.-++.. +.+..|.||...|.+|+.+|-++.|+|+|.|++|++||++..++...+..
T Consensus 73 ~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------------ 140 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------------ 140 (311)
T ss_pred EccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------------
Confidence 6666 88999999764 56778999999999999999999999999999999999997654432211
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC--ceeeeec---ccccc
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLR---EHSKE 369 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~ 369 (490)
..-..++|.|.|-++|++.....|++||++.- .+..++. .....
T Consensus 141 -------------------------------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~e 189 (311)
T KOG1446|consen 141 -------------------------------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAE 189 (311)
T ss_pred -------------------------------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccc
Confidence 11235789999999999998889999999853 3444443 33567
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCE---EEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV---YSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
...+.|+|+|. +|+.+...+.+++.|.-.|..+.++.++...- ...+|+||++++++|+.||+|++|+
T Consensus 190 w~~l~FS~dGK---------~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 190 WTDLEFSPDGK---------SILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred eeeeEEcCCCC---------EEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 88999999997 56677788999999999999988888765432 5788999999999999999999999
Q ss_pred cCCCeEEEEEec--CCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 447 LKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 447 ~~~~~~~~~~~~--~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+++|+.+..+.+ .+.+.++.|+|....+|+++.. +.+|
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~--l~fw 300 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN--LVFW 300 (311)
T ss_pred cCCCcEeeEecCCCCCCccccccCCceeeeeecCce--EEEE
Confidence 999999988877 3457889999999888887654 5555
No 77
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.2e-30 Score=251.50 Aligned_cols=244 Identities=20% Similarity=0.343 Sum_probs=197.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcee--------------EEecCCCCCEEEEEecC-CCCEEEEEeCCCeEE
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--------------CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAI 267 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~--------------~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~ 267 (490)
.|.....++++..+++++.+..+..|+..+... ..+.+|.++|++++|+| ++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 455555667777778888888888887544221 24678999999999999 788999999999999
Q ss_pred EEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCC
Q 011224 268 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDD 346 (490)
Q Consensus 268 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d 346 (490)
+||+.++..... ...++..+.+|...|.+++|+|++ ++|++|+.|
T Consensus 102 IWdi~~~~~~~~----------------------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 102 GWGIPEEGLTQN----------------------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EEecCCCccccc----------------------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 999875421100 123456788999999999999986 699999999
Q ss_pred CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCC-EEEEE
Q 011224 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP-VYSLA 425 (490)
Q Consensus 347 g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~ 425 (490)
++|+|||+.++..+..+..|...|.+++|+|++. +|++|+.|+.|++||+++++.+.++.+|... +..+.
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~---------lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS---------LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC---------EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 9999999999999889999999999999999986 7999999999999999999999999999765 45688
Q ss_pred ECCCCCEEEEEe----CCCcEEEEEcCCCe-EEEEEec--CCCEEEEEECCCCCEEEEEE-CCCcEEEEEee
Q 011224 426 FSPTGEYLASGS----LDKSMHIWSLKEGK-IVKTYTG--NGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 489 (490)
Q Consensus 426 ~spdg~~l~s~s----~dg~i~iw~~~~~~-~~~~~~~--~~~v~~~~~~~~g~~la~~~-~d~~v~v~~~~ 489 (490)
|++++..|++++ .|+.|++||+++.. .+..... ...+..+.|++++++|++|+ .|++|++||++
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 999988887765 47899999998754 3333322 23466778999999999887 59999999986
No 78
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.5e-29 Score=206.85 Aligned_cols=277 Identities=24% Similarity=0.460 Sum_probs=228.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC------------c----eeEEecCCCCCEEEEEecCCCCEEEEEeCCC
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG------------D----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 264 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~------------~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 264 (490)
+..|.+++|+|.|.+.+.|+...+.+|..... . ....-..|++.|++.+|+|.|..|++|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 57799999999999999999999999975211 0 1123356899999999999999999999999
Q ss_pred eEEEEEccCcce-----eEeeeeeccCeEEEEccCC-----ceEEEE-cCCCeEEEEEcCCCcceeEecCCCCCeeEEEE
Q 011224 265 TAIVWDVKTEEW-----KQQFEFHSGPTLDVDWRNN-----VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 333 (490)
Q Consensus 265 ~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 333 (490)
+|++.-.+...+ -..|..|.+.+.++.|.++ ..++++ ..|-.|++-|...+.+...+.||++.|.++ +
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-y 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-Y 190 (350)
T ss_pred eEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-E
Confidence 999886544332 2356778888888888532 234443 467789999999999999999999999887 2
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCceeeeecc--c-----cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC
Q 011224 334 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--H-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406 (490)
Q Consensus 334 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~-----~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 406 (490)
+-+|-+|++|+.|.+||+||++-..++.++.. | ...|.+++..|.|. +|++|-.|....+||++
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr---------ll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR---------LLASGHADSSCMLYDIR 261 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc---------eeeeccCCCceEEEEee
Confidence 33688999999999999999998888776532 2 25789999999997 89999999999999999
Q ss_pred CCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE------EEEEecCCCEEEEEECCCCCEEEEEECC
Q 011224 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI------VKTYTGNGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 407 ~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~------~~~~~~~~~v~~~~~~~~g~~la~~~~d 480 (490)
-++.++.+..|...|.++.|||...||.+||.|..|++-|+.. .+ +..-.+...+..+.|+|..-.+++.+.|
T Consensus 262 g~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 262 GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred CCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence 9999999999999999999999999999999999999999853 22 2222445568899999999889999999
Q ss_pred CcEEEEEe
Q 011224 481 HTVCVLDF 488 (490)
Q Consensus 481 ~~v~v~~~ 488 (490)
+++.+|-+
T Consensus 341 kt~tlwa~ 348 (350)
T KOG0641|consen 341 KTATLWAL 348 (350)
T ss_pred ceEEEecc
Confidence 99999965
No 79
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.98 E-value=7.8e-31 Score=221.84 Aligned_cols=287 Identities=19% Similarity=0.329 Sum_probs=228.3
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
..|.||..+++-+.|+.+|.+|+|++.|.++.+|--.+|. ..+.+.+|.+.|+|++..-+.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------rlGty~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------RLGTYDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------eeeeecCCCceEEEEEecCCcce
Confidence 3578999999999999999999999999999999765553 22456678899999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeC-----CCeEEEEEcc-------CcceeEeeeee
Q 011224 216 LATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDVK-------TEEWKQQFEFH 283 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~iwd~~-------~~~~~~~~~~~ 283 (490)
+++|+.|.++++||.........-....+|..+.|+++|++++.+.. -+.|.++|++ ..++...+..+
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999999999999876554444456789999999999998877653 3678999987 33444455555
Q ss_pred ccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCc-ceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee
Q 011224 284 SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 361 (490)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 361 (490)
...+...-|.. +..++++..+|.|..|+.+++. .+..-..|...|+.++++|+..+++|+|.|.+.++||..+-.++.
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 66677777765 4567889999999999999874 445556799999999999999999999999999999999988887
Q ss_pred eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC-cE------------EEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 362 DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TV------------KLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 362 ~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg-~i------------~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
++.. ..++.+.+++|... .+++.|+.+- .| |+|++-..+.+..+++|-+||++|+|+|
T Consensus 227 ty~t-e~PvN~aaisP~~d--------~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 227 TYTT-ERPVNTAAISPLLD--------HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred Eeee-cccccceecccccc--------eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 7753 56788888888653 2444444331 12 2222222234567789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 011224 429 TGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~ 448 (490)
+|+..++|+.||.|++.-+.
T Consensus 298 dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 298 DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred CCcccccCCCCceEEEEEec
Confidence 99999999999999998654
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=6.2e-30 Score=220.08 Aligned_cols=270 Identities=21% Similarity=0.340 Sum_probs=208.6
Q ss_pred ccccceeEEEECCC-CCEEEEEECCCcEEEEecCCC-CCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 140 GHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 140 ~H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
.-.+.|.+++|||. ..+|+.||.|++||+|+++.. ...++ ....+.++|++++|+.||..++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k----------------a~~~~~~PvL~v~WsddgskVf 88 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK----------------AQQSHDGPVLDVCWSDDGSKVF 88 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccch----------------hhhccCCCeEEEEEccCCceEE
Confidence 35678999999995 567778999999999999763 22111 1234578999999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCC--EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC
Q 011224 218 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 295 (490)
Q Consensus 218 sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
+|+.|+.+++||+.......+..|.++|.++.|-+... .|+|||.|++|+.||++....+.++..
T Consensus 89 ~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L------------- 155 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL------------- 155 (347)
T ss_pred eeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-------------
Confidence 99999999999999888889999999999999988766 799999999999999986654433321
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee-eec-cccccEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLR-EHSKEIYTI 373 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~i~~v 373 (490)
...+.+++. -..+++.+..++.|.+|++..+-... .+. ...-.+.+|
T Consensus 156 -----------------------------PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~v 204 (347)
T KOG0647|consen 156 -----------------------------PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCV 204 (347)
T ss_pred -----------------------------cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEE
Confidence 112223322 23467778888999999996543211 111 122356777
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC--eEEEEeeCCCC---------CEEEEEECCCCCEEEEEeCCCcE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--~~~~~~~~h~~---------~v~~l~~spdg~~l~s~s~dg~i 442 (490)
+..++.. ..|.|+-.|.+-|..+..+ +.-++++.|+. +|++|+|+|.-..|+|+|.||+.
T Consensus 205 a~f~d~~---------~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 205 ACFQDKD---------GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred EEEecCC---------ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 7767664 2478999999999988876 56677888863 57889999999999999999999
Q ss_pred EEEEcCCCeEEEEEec-CCCEEEEEECCCCCEEEEEE
Q 011224 443 HIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 443 ~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~la~~~ 478 (490)
.+||-.....+++++. ...|++++|+.+|+++|.+.
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 9999887777777654 55799999999999999774
No 81
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2e-31 Score=223.21 Aligned_cols=247 Identities=25% Similarity=0.423 Sum_probs=209.2
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
+-+|.||++.|..+.++.+-.+.|||+.|=+.++||.-+|..+. .-.|..-|..++|+.|.+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh------------------sf~hkhivk~~af~~ds~ 113 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH------------------SFEHKHIVKAVAFSQDSN 113 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh------------------hhhhhheeeeEEecccch
Confidence 46899999999999999999999999999999999987765321 123345689999999999
Q ss_pred EEEEEeCCCeEEEEECCCc--eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 215 LLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
+|++|+.+..+|||+++.. ....+.+|++.|..+-|....+.|+|++.|++||+||.+++..++.+..
T Consensus 114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~---------- 183 (334)
T KOG0278|consen 114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF---------- 183 (334)
T ss_pred hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----------
Confidence 9999999999999998753 4557899999999999999999999999999999999999987766542
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
...|+++.++++|++|.+ ...+.|.+||.++-..+..+.. ...|.+
T Consensus 184 --------------------------------~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~-P~nV~S 229 (334)
T KOG0278|consen 184 --------------------------------NSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKM-PCNVES 229 (334)
T ss_pred --------------------------------CCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccC-cccccc
Confidence 346888999999997754 4567899999998887776653 334666
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 451 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~ 451 (490)
...+|... +++.|+.|..++.||..++..+..+ ++|.++|.+|.|+|+|...|+||.||+|++|...-++
T Consensus 230 ASL~P~k~---------~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 230 ASLHPKKE---------FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccCCCc---------eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 66667653 6888999999999999999998885 8999999999999999999999999999999987655
Q ss_pred E
Q 011224 452 I 452 (490)
Q Consensus 452 ~ 452 (490)
.
T Consensus 301 ~ 301 (334)
T KOG0278|consen 301 T 301 (334)
T ss_pred c
Confidence 3
No 82
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=236.36 Aligned_cols=330 Identities=20% Similarity=0.307 Sum_probs=254.5
Q ss_pred CCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 132 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 132 ~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
.+.+++++++...|+++.=+|--..+|.|-.+|+|.++++..++.+ ..+++ .-+.|+.++|.-
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil----------~sFk~-------d~g~VtslSFrt 254 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL----------MSFKQ-------DWGRVTSLSFRT 254 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE----------EEEEc-------cccceeEEEecc
Confidence 4557889999999999999999999999999999999999766421 11111 136799999999
Q ss_pred CCCE-EEEEeCCCeEEEEECCCceeE--EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc----eeEeeeeec
Q 011224 212 EGTL-LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHS 284 (490)
Q Consensus 212 ~~~~-l~sg~~dg~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~ 284 (490)
||.. +++|+..|.+.+||++..... ....|.+.|..+.|.|....+++++.|.++++|=..++. +.+.-.+|.
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 9975 566777799999999876543 345798999999999999999999999999999554332 233334555
Q ss_pred cCeEEEEcc--CCceEEEEcCCCe--------------------------------------------------------
Q 011224 285 GPTLDVDWR--NNVSFATSSTDNM-------------------------------------------------------- 306 (490)
Q Consensus 285 ~~~~~~~~~--~~~~~~~~~~d~~-------------------------------------------------------- 306 (490)
.|..++.|. +...+.+++.|++
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 565555553 1222233344443
Q ss_pred ---------EEEEEcCCCcc-eeEec-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee---ccccc
Q 011224 307 ---------IYVCKIGENRP-IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL---REHSK 368 (490)
Q Consensus 307 ---------i~~~~~~~~~~-~~~~~-----~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~ 368 (490)
.+.|+.+.... -..+. .....+++++.++-|++.+.|+..|+|-+|++.+|.....+ ..|..
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 34444433221 11111 12256889999999999999999999999999999888877 47999
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE--------------------------------------
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-------------------------------------- 410 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-------------------------------------- 410 (490)
+|+.++....+. .+++++.+|.+++||......
T Consensus 495 ~V~gla~D~~n~---------~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 495 EVTGLAVDGTNR---------LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred ceeEEEecCCCc---------eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 999998765554 688899999999998765432
Q ss_pred ---EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECC-CcEEEE
Q 011224 411 ---LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN-HTVCVL 486 (490)
Q Consensus 411 ---~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d-~~v~v~ 486 (490)
+..+.||.+.|++++|||||+||++++.|++|++||+.++.++..+.....+.++.|+|.|++||+...| ..|++|
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 1223479999999999999999999999999999999999999998888889999999999999999887 678888
Q ss_pred E
Q 011224 487 D 487 (490)
Q Consensus 487 ~ 487 (490)
-
T Consensus 646 s 646 (910)
T KOG1539|consen 646 S 646 (910)
T ss_pred E
Confidence 3
No 83
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-30 Score=224.40 Aligned_cols=285 Identities=24% Similarity=0.428 Sum_probs=229.6
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
+..|.||+++|..++.......+.|+|.|.+.+||.++++.+. ..+.+|.+.|.++.|++.+.
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-----------------~~Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-----------------ATYTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-----------------eeecccccceeeEEeccccc
Confidence 4567899999999998877789999999999999999988653 23456788999999999999
Q ss_pred EEEEEeCCCeEEEEECC------C-----------------------------------ceeEEecCCCCCEEEEEecCC
Q 011224 215 LLATGSYDGQARIWSTN------G-----------------------------------DLKCTLSKHKGPIFSLKWNKK 253 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~------~-----------------------------------~~~~~~~~h~~~V~~l~~~~~ 253 (490)
++++++.|++..||... . -+++.+.+|.+.|.+..|...
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 99999999999999510 0 023456677777777777777
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEE
Q 011224 254 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 333 (490)
Q Consensus 254 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 333 (490)
|++++++|.|++..+||+++++ ++..+.||..+.+-++-
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge-----------------------------------------~v~~LtGHd~ELtHcst 322 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGE-----------------------------------------VVNILTGHDSELTHCST 322 (481)
T ss_pred cceeeeeeccccceeeeeccCc-----------------------------------------eeccccCcchhcccccc
Confidence 7777777777777777777665 44567788888999999
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCc-eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EE
Q 011224 334 DPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LL 411 (490)
Q Consensus 334 ~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~ 411 (490)
+|..+++++.+.|.+.++||++..- .+..|++|...|+++.|..+.. +++|+.|.+|++||+++.+ ++
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~----------vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR----------VVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc----------eeecCCCceEEEeeeccccCcc
Confidence 9999999999999999999998543 3667899999999999988764 7899999999999998764 55
Q ss_pred EEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE----ecCC-CEEEEEECCCC--CEEEEEECCCcEE
Q 011224 412 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TGNG-GIFEVCWNKEG--DKIAACFANHTVC 484 (490)
Q Consensus 412 ~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~----~~~~-~v~~~~~~~~g--~~la~~~~d~~v~ 484 (490)
.++. ...+++.|+.+..++.||.--.+..|++||+...++...- .++. -|.+++|..+- .-|.+|+-|+.+.
T Consensus 393 ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 393 ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 6665 4578999999998889999888899999999755442221 2343 38899997753 5677888888888
Q ss_pred EEEe
Q 011224 485 VLDF 488 (490)
Q Consensus 485 v~~~ 488 (490)
=|++
T Consensus 472 gW~i 475 (481)
T KOG0300|consen 472 GWKI 475 (481)
T ss_pred eeEe
Confidence 8876
No 84
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.5e-29 Score=251.97 Aligned_cols=283 Identities=26% Similarity=0.395 Sum_probs=217.3
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCC--CCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG--TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
....++..|.+.|+|+.|+|||++||+||.|+.|.||..... ....+..++..++...+.+ ....+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccC
Confidence 345677889999999999999999999999999999998741 1122222333333332221 2234578899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 211 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
|++.+|++++.|++|.||+... +....+.+|.+.|-++.|.|-|+||++-+.|++|++|.+.+..+.+.+..+...
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~--- 215 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE--- 215 (942)
T ss_pred CCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh---
Confidence 9999999999999999999654 566789999999999999999999999999999999986554333332221110
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC----CCeEEEEecCCCceeeeecc
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~ 365 (490)
. +-...+.-+.|||||++|++... -.++.|.+-.+.+.-..|.+
T Consensus 216 --------------------------~------~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG 263 (942)
T KOG0973|consen 216 --------------------------S------PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG 263 (942)
T ss_pred --------------------------C------CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec
Confidence 0 11224667999999999998643 33688888778888888999
Q ss_pred ccccEEEEEEcCCCCCC-------CCCC-CcEEEEEEECCCcEEEEeCCCCeEEEEeeC-CCCCEEEEEECCCCCEEEEE
Q 011224 366 HSKEIYTIRWSPTGSGT-------NNPN-QQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~-------~~~~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~ 436 (490)
|.+++.+++|+|.--.. ..++ ..+++|+||.|++|-||.....++++.+.. ...+|.+++|+|||..|..+
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEE
Confidence 99999999999842111 1122 234899999999999999988888766532 34689999999999999999
Q ss_pred eCCCcEEEEEcCCCe
Q 011224 437 SLDKSMHIWSLKEGK 451 (490)
Q Consensus 437 s~dg~i~iw~~~~~~ 451 (490)
|.||+|.++.+....
T Consensus 344 S~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 344 SLDGTVALIHFEEKE 358 (942)
T ss_pred ecCCeEEEEEcchHH
Confidence 999999999987654
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.4e-29 Score=223.09 Aligned_cols=282 Identities=22% Similarity=0.323 Sum_probs=231.1
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
..+|.++...|....++||+.|..+.++|...++.. ..+.+|...|+.+.|+++...+++++.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-----------------~~~~Gh~kki~~v~~~~~~~~v~~aSa 281 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-----------------ATLKGHTKKITSVKFHKDLDTVITASA 281 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh-----------------hhccCcceEEEEEEeccchhheeecCC
Confidence 357888888888789999999999999997654321 223456788999999999999999999
Q ss_pred CCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEE
Q 011224 222 DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 300 (490)
Q Consensus 222 dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
|..|+||.... ........|..+|+.+..+|.|.||++++.|+++.+.|++++........
T Consensus 282 d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~------------------ 343 (506)
T KOG0289|consen 282 DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD------------------ 343 (506)
T ss_pred cceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee------------------
Confidence 99999998653 34456778999999999999999999999999999999887753321110
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCC
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~ 380 (490)
.+..-.+++++|||||-+|++|..||.++|||++....+..|.+|.++|.+++|+-+|
T Consensus 344 ---------------------~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG- 401 (506)
T KOG0289|consen 344 ---------------------ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG- 401 (506)
T ss_pred ---------------------ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-
Confidence 0112247899999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC-CCCEEEEEECCCCCEEEEEeCCCcEEEEEcC--CCeEEEEEe
Q 011224 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLK--EGKIVKTYT 457 (490)
Q Consensus 381 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~--~~~~~~~~~ 457 (490)
++|+++..|+.|++||++..+...++.-. ..+|.++.|.+.|+||+.+|.|=+|+++.-. .+..+..+.
T Consensus 402 --------Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 402 --------YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred --------eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence 49999999999999999987766665432 2379999999999999999887666666532 455666655
Q ss_pred cCC-CEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 458 GNG-GIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 458 ~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.+. ..+.+.|.....++++++.|..++|+-+
T Consensus 474 ~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hcccccceeeecccceEEeeccchhheEEeec
Confidence 544 5788899999999999999999888754
No 86
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=5.1e-29 Score=236.31 Aligned_cols=278 Identities=22% Similarity=0.382 Sum_probs=226.0
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEE-EEEcC-CC
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWNG-EG 213 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~s~-~~ 213 (490)
+.+.||...|.+|++.+. ..++++|.||++++|+-......+. ..+ ..+.+-|.+ ++|-+ ++
T Consensus 8 ~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~-----------~~~----~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET-----------HAF----EGPKGFIANSICYAESDK 71 (745)
T ss_pred EEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc-----------eec----ccCcceeeccceeccccC
Confidence 678999999999997644 4889999999999998543221110 000 112223333 55553 55
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 214 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
-.+++|+.|.+|.+|...+ ....++.+|+..|.++.-..++. ++|||.|.++++|- .+++...+..|..+|.++..
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~ 148 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVAS 148 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeee
Confidence 6799999999999999765 56778999999999998777766 99999999999994 55666778999999999887
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
.+...+++++.|++|++|.- +..+++|.||...|..+++-+++. |++|+.||.|++|++ ++.++.++.+|..-+++
T Consensus 149 l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 149 LPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred cCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 77779999999999999986 667889999999999999987654 679999999999999 78889999999999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
+...+.+. .+++++.|++++||+.. .+.+.+.--...|+++.+-++|. |++|+.||.|+||...
T Consensus 225 is~~~~~~---------~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 225 ISMALSDG---------LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCCCC---------eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99555543 78999999999999976 67777764445899999988887 6778889999999876
No 87
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4e-28 Score=239.70 Aligned_cols=245 Identities=19% Similarity=0.324 Sum_probs=184.2
Q ss_pred EEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCc----
Q 011224 159 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD---- 233 (490)
Q Consensus 159 sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~---- 233 (490)
+||.++.|++|+..... .+..+ .+|...|.+++|+|+ +.+|++|+.|++|+||++...
T Consensus 49 gGG~~gvI~L~~~~r~~-------------~v~~L----~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~ 111 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKP-------------PVIKL----KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV 111 (568)
T ss_pred CCCceeEEEeeecCCCc-------------eEEEE----cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 36678889999864321 11222 346788999999996 799999999999999997531
Q ss_pred -----eeEEecCCCCCEEEEEecCCCCE-EEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeE
Q 011224 234 -----LKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 307 (490)
Q Consensus 234 -----~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 307 (490)
....+.+|...|.+++|+|++.. |++++.|++|++||++++....
T Consensus 112 ~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~----------------------------- 162 (568)
T PTZ00420 112 KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF----------------------------- 162 (568)
T ss_pred cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-----------------------------
Confidence 23467899999999999999876 4689999999999998764321
Q ss_pred EEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEE-----EcCCCCCC
Q 011224 308 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR-----WSPTGSGT 382 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~-----~~p~g~~~ 382 (490)
.+. |...|.+++|+|+|.+|++++.|+.|+|||++++..+.++.+|.+.+.+.. |++++.
T Consensus 163 ------------~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~-- 227 (568)
T PTZ00420 163 ------------QIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN-- 227 (568)
T ss_pred ------------EEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC--
Confidence 111 335689999999999999999999999999999999999988887654433 345543
Q ss_pred CCCCCcEEEEEEECCC----cEEEEeCCC-CeEEEEe--eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE--E
Q 011224 383 NNPNQQLILASASFDS----TVKLWDVEL-GKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--V 453 (490)
Q Consensus 383 ~~~~~~~~l~sgs~dg----~i~iwd~~~-~~~~~~~--~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~--~ 453 (490)
+|++++.|+ .|+|||+++ ++++..+ ..+.+.+......++|.++++|+.|+.|++|++..+.+ +
T Consensus 228 -------~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 228 -------YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKV 300 (568)
T ss_pred -------EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEee
Confidence 567776664 799999995 5555544 33344444555566799999999999999999987754 2
Q ss_pred EEEecCCCEEEEEECCCC
Q 011224 454 KTYTGNGGIFEVCWNKEG 471 (490)
Q Consensus 454 ~~~~~~~~v~~~~~~~~g 471 (490)
..+.......+++|.|+-
T Consensus 301 ~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cccccCCCccceEEcccc
Confidence 333334457789999974
No 88
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-28 Score=213.01 Aligned_cols=260 Identities=21% Similarity=0.342 Sum_probs=206.9
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
+...+.+|.++|+|+|. ++.++||||.|-+|+|||+...... +....|.+.|+++.|.+.-
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~ql-----------------g~ll~HagsitaL~F~~~~ 95 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQL-----------------GILLSHAGSITALKFYPPL 95 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhh-----------------cceeccccceEEEEecCCc
Confidence 35677899999999998 5899999999999999998754322 1223457889999999876
Q ss_pred C--EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 214 T--LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 214 ~--~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
. .|++|+.||.|.+|+... .....+.+|++.|+.|+.||.++.-++.+.|+.++.||+-+++...
T Consensus 96 S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~------------ 163 (362)
T KOG0294|consen 96 SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF------------ 163 (362)
T ss_pred chhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce------------
Confidence 5 899999999999999865 5667899999999999999999999999999999999997764211
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccE
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 370 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 370 (490)
+..++ ...+.|.|+|.|.+++.++.+ .|-||.+.+.+....+... ..+
T Consensus 164 ------------------v~~L~------------~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~ 211 (362)
T KOG0294|consen 164 ------------------VLNLK------------NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRI 211 (362)
T ss_pred ------------------eeccC------------CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccc
Confidence 11111 112338999999988888776 5889988876655544332 456
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEE--CCCCCEEEEEeCCCcEEEEEcC
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--spdg~~l~s~s~dg~i~iw~~~ 448 (490)
.++.|-..+ .|++|..|+.|++||.....+...+.+|...|-++.+ .|++.||+|+|.||.|+|||++
T Consensus 212 l~~~~l~~~----------~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 212 LCATFLDGS----------ELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eeeeecCCc----------eEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 676664443 6899999999999999999999999999999999984 5788999999999999999998
Q ss_pred CC-----eEEEEEecCCCEEEEE
Q 011224 449 EG-----KIVKTYTGNGGIFEVC 466 (490)
Q Consensus 449 ~~-----~~~~~~~~~~~v~~~~ 466 (490)
.. +++..+..+..++++.
T Consensus 282 ~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 282 METKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred ccccCCcceeEEeecCCccceee
Confidence 65 4555555555566554
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.1e-29 Score=224.97 Aligned_cols=276 Identities=22% Similarity=0.343 Sum_probs=232.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeE-----------------Ee--cCCCCCEEEEEecCCCCEEEEE
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-----------------TL--SKHKGPIFSLKWNKKGDYLLTG 260 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-----------------~~--~~h~~~V~~l~~~~~~~~l~s~ 260 (490)
|.-+|++++++|++.+.++++.+++|.=|+....... .. .+|...+.+++.++++.||++|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 4567999999999999999999999999985432100 11 2788899999999999999999
Q ss_pred eCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCE
Q 011224 261 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 339 (490)
Q Consensus 261 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 339 (490)
+.|..|.||+.++.+.++.+..|.+.|.++.|.. ...+.+++.|+.+.+|++.....+.++.||+..|.++....-++.
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~ 300 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERC 300 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccce
Confidence 9999999999999999999999999999999964 467889999999999999999999999999999999998888888
Q ss_pred EEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-CC-
Q 011224 340 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GH- 417 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h- 417 (490)
+-.|+.|+++++|++... ....++++.+.+-|++|-.+. -+++||.||.|.+|++...+++++.. +|
T Consensus 301 vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~----------HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE----------HFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred EEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc----------ceeeccCCceEEEeeecccCceeEeecccc
Confidence 888889999999999433 334567888899999997665 48899999999999999998887643 22
Q ss_pred ----------CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC----eEEEEEecCCCEEEEEECCCCCEEEEE-ECCCc
Q 011224 418 ----------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG----KIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHT 482 (490)
Q Consensus 418 ----------~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~----~~~~~~~~~~~v~~~~~~~~g~~la~~-~~d~~ 482 (490)
..+|++|+..|...++|+||.+|.|++|-+.+| .++..+.-.+-|++++|+++|+.+++| +.-..
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccc
Confidence 127999999999999999999999999999887 345666667789999999999966665 44444
Q ss_pred EEEE
Q 011224 483 VCVL 486 (490)
Q Consensus 483 v~v~ 486 (490)
+--|
T Consensus 450 lGRW 453 (479)
T KOG0299|consen 450 LGRW 453 (479)
T ss_pred ccee
Confidence 4333
No 90
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.8e-28 Score=239.13 Aligned_cols=227 Identities=18% Similarity=0.343 Sum_probs=181.4
Q ss_pred EeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCC-CCEEEEEeCCCeEEEEEccCcce-eEeeeeeccCeEEEEccCC
Q 011224 219 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRNN 295 (490)
Q Consensus 219 g~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 295 (490)
|+.++.|++|+... .....+.+|.++|++++|+|. +++|++|+.|++|++||+.++.. ...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------- 113 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence 66788999998654 345678899999999999997 78999999999999999875421 000
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCE-EEEEeCCCeEEEEecCCCceeeeeccccccEEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 374 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 374 (490)
...++..+.+|...|.+++|+|++.. |++++.|++|+|||++++..+..+. +...|.+++
T Consensus 114 ------------------i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 114 ------------------IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLK 174 (568)
T ss_pred ------------------cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEE
Confidence 01234457789999999999999876 5799999999999999988776665 567899999
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEE-----EEECCCCCEEEEEeCCC----cEEEE
Q 011224 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-----LAFSPTGEYLASGSLDK----SMHIW 445 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~-----l~~spdg~~l~s~s~dg----~i~iw 445 (490)
|+|+|. +|++++.|+.|+|||+++++.+.++.+|.+.+.. ..|++++.+|+++|.|+ +|+||
T Consensus 175 wspdG~---------lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLW 245 (568)
T PTZ00420 175 WNIKGN---------LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLW 245 (568)
T ss_pred ECCCCC---------EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEE
Confidence 999986 7888999999999999999999999999876543 34578999999988774 79999
Q ss_pred EcCC-CeEEEEEecCC--CEEEEEE-CCCCCEEEEEECCCcEEEEEee
Q 011224 446 SLKE-GKIVKTYTGNG--GIFEVCW-NKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 446 ~~~~-~~~~~~~~~~~--~v~~~~~-~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|+++ ++.+..+..+. ++....| .++|.++++|..|++|++|+++
T Consensus 246 Dlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 246 DLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred ECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 9985 55565554332 3323344 4458899999999999999985
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.8e-28 Score=210.78 Aligned_cols=266 Identities=21% Similarity=0.355 Sum_probs=212.8
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
...|+.+.|+|.+..|+.++.||++++|++...... . .-.+..++++++|.++ ..+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--------------~----~~~~~~plL~c~F~d~-~~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--------------L----KFKHGAPLLDCAFADE-STIVTGGL 73 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--------------h----heecCCceeeeeccCC-ceEEEecc
Confidence 578999999999999999999999999998754210 0 0124678999999984 67889999
Q ss_pred CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEE
Q 011224 222 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 301 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
||.|+.+|++......+..|..+|.++.+.+....+++||+|++|++||.+.......+.
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-------------------- 133 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-------------------- 133 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--------------------
Confidence 999999999998888899999999999999998999999999999999998632211111
Q ss_pred cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc--ccccEEEEEEcCCC
Q 011224 302 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTG 379 (490)
Q Consensus 302 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~p~g 379 (490)
....|.|+.. .|+.|+.|+.|..+.+||+++.......+. ..-.+.++++-|++
T Consensus 134 ----------------------~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~ 189 (323)
T KOG1036|consen 134 ----------------------QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG 189 (323)
T ss_pred ----------------------cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence 1124556655 477888999999999999988765432222 23457889888865
Q ss_pred CCCCCCCCcEEEEEEECCCcEEEEeCCCC----eEEEEeeCCCC---------CEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 380 SGTNNPNQQLILASASFDSTVKLWDVELG----KLLYSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 380 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~---------~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.+ .+.+|-||.|.+=.++.. +..+.++.|.. ||++|+|+|-...|||||.||.|.+||
T Consensus 190 eG---------y~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 190 EG---------YVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred Cc---------eEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEcc
Confidence 42 577899999888666554 45677887753 799999999999999999999999999
Q ss_pred cCCCeEEEEEecC-CCEEEEEECCCCCEEEEEEC
Q 011224 447 LKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 447 ~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~ 479 (490)
+.+.+.+..+... ..|.+++|+.+|..||.|+.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9998888888765 56999999999999998864
No 92
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-28 Score=233.94 Aligned_cols=276 Identities=26% Similarity=0.490 Sum_probs=229.6
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 011224 146 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 225 (490)
Q Consensus 146 ~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i 225 (490)
+-+.|+ ....||.| ....|.+|+-.++.. ..+..+ +...|+++.|+++|.+|++|..+|.|
T Consensus 181 nlldWs-s~n~laVa-lg~~vylW~~~s~~v-----------~~l~~~------~~~~vtSv~ws~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVA-LGQSVYLWSASSGSV-----------TELCSF------GEELVTSVKWSPDGSHLAVGTSDGTV 241 (484)
T ss_pred hHhhcc-cCCeEEEE-ecceEEEEecCCCce-----------EEeEec------CCCceEEEEECCCCCEEEEeecCCeE
Confidence 346777 34455555 345799999776541 111111 14679999999999999999999999
Q ss_pred EEEECCC-ceeEEecC-CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe-eeeeccCeEEEEcc-CCceEEEE
Q 011224 226 RIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWR-NNVSFATS 301 (490)
Q Consensus 226 ~iw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 301 (490)
.|||... .....+.+ |...|-+++|+ +..+.+|+.|+.|..+|++..+.... +..|...|..+.|. +...++++
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG 319 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG 319 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC
Confidence 9999754 34455666 99999999998 67899999999999999998765444 78899999999996 56788999
Q ss_pred cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEEEEEe--CCCeEEEEecCCCceeeeeccccccEEEEEEcCC
Q 011224 302 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378 (490)
Q Consensus 302 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~ 378 (490)
+.|+.+.+|+.....++..+..|.+.|.+++|+|- ..+||+|+ .|+.|++||..++..+..+. ....|.++.|++.
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKK 398 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCC
Confidence 99999999999888999999999999999999995 46788765 69999999999998887764 4568999999998
Q ss_pred CCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 379 g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
.. +++...|..++.|.||++.+.+.+..+.+|...|..+++||||..+++|+.|.++++|++-+.
T Consensus 399 ~k-------Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 399 YK-------ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CC-------EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 75 234455777889999999999999999999999999999999999999999999999998764
No 93
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-28 Score=212.20 Aligned_cols=291 Identities=23% Similarity=0.346 Sum_probs=210.4
Q ss_pred CCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 131 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 131 ~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
.+-.+.+|+||.+.|++++||.||++|||++.|++|+||++.+..... +...+.+-....-+.+.|+
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e-------------Hr~~R~nve~dhpT~V~Fa 141 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE-------------HRCIRQNVEYDHPTRVVFA 141 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh-------------hhHhhccccCCCceEEEEC
Confidence 344456899999999999999999999999999999999987632110 0001112223467889999
Q ss_pred CCCCEEEE-EeCCCeEEEEECC----Ccee---------EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcce
Q 011224 211 GEGTLLAT-GSYDGQARIWSTN----GDLK---------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 211 ~~~~~l~s-g~~dg~i~iw~~~----~~~~---------~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 276 (490)
||.+-++. .-...++++|... +... ..-..|.-.|..+-....+.+|++++.|..|.+|+++ ++.
T Consensus 142 pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~ 220 (420)
T KOG2096|consen 142 PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQL 220 (420)
T ss_pred CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cce
Confidence 99876554 4455688998643 2111 1123467777777777888999999999999999998 777
Q ss_pred eEeeeeeccCeEEEEccCCceE-EEEcCCCeEEEEEcC--------CCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIG--------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 347 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~~~~~~--------~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 347 (490)
.+.+...+.........++.+| ++++----|++|..- +-+.+..+.||...|..++|+|+...++|.|.||
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 7766655544444455555555 455555667777642 1234567889999999999999999999999999
Q ss_pred eEEEEecCCC-------ceeeee----ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-e
Q 011224 348 TAKIWNMKQD-------KYVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-N 415 (490)
Q Consensus 348 ~i~iwd~~~~-------~~~~~~----~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~ 415 (490)
++||||++-. +.+.+. ....+.-..+..+|.|. .|| .+....|+++..++++..-++ .
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---------~lA-~s~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---------SLA-VSFGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---------EEE-eecCCceEEEEcccCccchhHHH
Confidence 9999997532 112221 12223344788899886 343 455678999999998876665 3
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.|...|.+|+|+++|+|+||+| |..++++.
T Consensus 371 ~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 5889999999999999999998 67788775
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=238.03 Aligned_cols=297 Identities=20% Similarity=0.376 Sum_probs=239.3
Q ss_pred cccccee---EEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 140 GHTSEVC---ACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 140 ~H~~~V~---~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
.|...|. ++..++. +++|+|||.||.|++|++..-..... . ........|+..|..+....+++.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s---~--------~~~asme~HsDWVNDiiL~~~~~t 87 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS---T--------PYIASMEHHSDWVNDIILCGNGKT 87 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc---c--------chhhhhhhhHhHHhhHHhhcCCCc
Confidence 4566666 6666654 67899999999999999754321100 0 012233456788999999999999
Q ss_pred EEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEe-cCCCCEEEEEeCCCeEEEEEccCcce--eEeeeeeccCeEE
Q 011224 216 LATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKTEEW--KQQFEFHSGPTLD 289 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~-~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~ 289 (490)
|+|++.|-+|++|+.... ...++..|++.|.+|++ -++...++|||-|+.|.+||++++.- +..+.
T Consensus 88 lIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-------- 159 (735)
T KOG0308|consen 88 LISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-------- 159 (735)
T ss_pred eEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc--------
Confidence 999999999999997654 34477889999999999 78888999999999999999987732 11111
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccc
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 368 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 368 (490)
..+...+. |+...|.+++.++.|..|++|+..+.+++||.++.+.+..+++|..
T Consensus 160 -------------------------~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd 214 (735)
T KOG0308|consen 160 -------------------------NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD 214 (735)
T ss_pred -------------------------ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecccc
Confidence 01111222 7888999999999999999999999999999999999999999999
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
.|..+..+++|. .++++|.||+|++||+...+++.++..|...|+++.-+|+=..+.+|+.||.|..=|++
T Consensus 215 NVr~ll~~dDGt---------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 215 NVRVLLVNDDGT---------RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred ceEEEEEcCCCC---------eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 999999999997 68899999999999999999999999999999999999999999999999999999998
Q ss_pred C-CeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 449 E-GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 449 ~-~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+ .+....+.....|..+..+...+-+-++..|+.|.-|-++
T Consensus 286 n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 286 NPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 8 4555666666667777777665555677777777777543
No 95
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.2e-28 Score=232.07 Aligned_cols=273 Identities=22% Similarity=0.349 Sum_probs=234.0
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcee---EEecCCCCCEEE-EEecCC-CCEEEEEeCCCeEEEEEc
Q 011224 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFS-LKWNKK-GDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 197 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~---~~~~~h~~~V~~-l~~~~~-~~~l~s~s~D~~v~iwd~ 271 (490)
..+|...|..++..+. ..++++|.||++++|...++.. ..+.+|.+-|.. ++|.+. +-.+++|++|+++.+|.+
T Consensus 10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 3456778888886654 4789999999999999754432 457778887766 888763 345999999999999999
Q ss_pred cCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
.......++..|...|.++.......+++++-|.++++|.... ....+.||+..|++++.-|.+ .++|||.|.+|++
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKL 165 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCcceeee
Confidence 9999999999999999999977777799999999999998754 445689999999999999988 7789999999999
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 431 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 431 (490)
|.- ++.+++|.+|...|..+++-|++. ++|++.||.|++|++ +|.++.++.+|...|++++..+++.
T Consensus 166 Wk~--~~~l~tf~gHtD~VRgL~vl~~~~----------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 166 WKG--GTLLKTFSGHTDCVRGLAVLDDSH----------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred ccC--CchhhhhccchhheeeeEEecCCC----------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC
Confidence 964 788899999999999999988864 789999999999999 7999999999999999999888899
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 432 YLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.++++|.|++++||+.. .+++.+...+ .++++..-+.|+. ++|+.||.|+||..+
T Consensus 233 ~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCE-EEeccCceEEEEEec
Confidence 99999999999999976 7788887765 6888888777765 566678999999765
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-27 Score=206.79 Aligned_cols=242 Identities=19% Similarity=0.295 Sum_probs=200.9
Q ss_pred EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc-CCceEEEEc--CCCeEEEEEcC
Q 011224 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSS--TDNMIYVCKIG 313 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~d~~i~~~~~~ 313 (490)
.+..-.+.|.++.|+++|.+|++++.|-++++||..++..+.++......+..+.|. ....++.++ .|.+|+..++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 344457789999999999999999999999999999999998888776666666663 333344444 48899999999
Q ss_pred CCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEE
Q 011224 314 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 393 (490)
Q Consensus 314 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~s 393 (490)
.++-++.|.||...|++++.+|-+..+++++.|++|++||++..++..-+..... ..++|.|.|- ++|+
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GL---------ifA~ 157 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGL---------IFAL 157 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCc---------EEEE
Confidence 9999999999999999999999999999999999999999998887766654433 3467889984 7888
Q ss_pred EECCCcEEEEeCCCC--eEE--EEee-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC----EEE
Q 011224 394 ASFDSTVKLWDVELG--KLL--YSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFE 464 (490)
Q Consensus 394 gs~dg~i~iwd~~~~--~~~--~~~~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~----v~~ 464 (490)
+.....|++||++.- .+. +.+. +-....+.|.|||||++|+.+...+.+++.|.-+|.+..++..+.. ..+
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 887779999999853 222 2232 3356789999999999999999999999999999999888876432 358
Q ss_pred EEECCCCCEEEEEECCCcEEEEEee
Q 011224 465 VCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 465 ~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+|+|||+.+.+|+.||+|+||++.
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcC
Confidence 8899999999999999999999974
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=218.37 Aligned_cols=276 Identities=22% Similarity=0.346 Sum_probs=224.4
Q ss_pred ccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 142 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 142 ~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
...|.+++|||... -+|++++ -.+.||+..+.... +.+ ..-...|.+++|-.||++|+.|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~-------------k~~----srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVR-------------KTF----SRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhh-------------hhH----HhhccceeEEEeecCCeEEEccC
Confidence 35799999999754 3444433 35778876543211 111 11235699999999999999999
Q ss_pred CCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC--Cc
Q 011224 221 YDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NV 296 (490)
Q Consensus 221 ~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~ 296 (490)
..|.|+|+|.... ....+.+|+.+|..+.|+|.++ .|++|+.|+.+++||+.+...+..+..|...+.+.++.+ +.
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 9999999995542 4457889999999999999775 567888899999999999887557888999999998864 45
Q ss_pred eEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc-eeeeeccccccEEEEE
Q 011224 297 SFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIR 374 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~ 374 (490)
.+++|+-|+.|++||++.. ..+..+ .|..+|..+.+-|.|.+||+++.. .+++||+.++. .+..+..|...|+|++
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLR 245 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEE
Confidence 7899999999999999877 555555 588899999999999999999764 79999998654 4555556999999999
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
+..++. .|+||+-|+.+++||+.+-+.++.+. ..++|.+++.+|+++.++.|..+|.+.+-..
T Consensus 246 l~s~~~---------rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 246 LASDST---------RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eecCCc---------eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 988774 68999999999999999889988887 6789999999999999999999998887643
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.4e-28 Score=225.03 Aligned_cols=285 Identities=19% Similarity=0.369 Sum_probs=234.3
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
.|-.-|.++.+|...++++|||. |.|+|||+...... . |+.-+. +. .....|.++...|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-~----PvsqLd---cl----~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-S----PVSQLD---CL----NRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-C----cccccc---cc----CcccceeeeEecCCCceEEec
Confidence 58888999999999999999976 77999998653211 0 110000 00 113458899999999999999
Q ss_pred eCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc
Q 011224 220 SYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296 (490)
Q Consensus 220 ~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+.-.++.|||+... +...+....-+.+.|+.+|+.+..++|..||.|.|||+.+..
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--------------------- 542 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--------------------- 542 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce---------------------
Confidence 99999999997643 233444444567899999999999999999999999997653
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
.++.|.||...+.||.+++||..|.||+-|.+||.||+++++.+.... ....|+++.++
T Consensus 543 --------------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~c 601 (705)
T KOG0639|consen 543 --------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYC 601 (705)
T ss_pred --------------------eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccC
Confidence 245678999999999999999999999999999999999987665432 34689999999
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
|.+. +|+.|-.++.+-+-... +...+.+.-|...|.+|.|++.|+|+++.|.|+.+..|...-|..+...
T Consensus 602 P~~d---------WlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 602 PTGD---------WLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred CCcc---------ceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence 9986 79999999999888765 4455777789999999999999999999999999999999888877776
Q ss_pred ecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 457 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 457 ~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.....|+++..|.+.+++++|+.|+.-.||.+.
T Consensus 672 kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 672 KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 667789999999999999999999999998763
No 99
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=227.58 Aligned_cols=318 Identities=21% Similarity=0.365 Sum_probs=249.6
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc------------CCC
Q 011224 146 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN------------GEG 213 (490)
Q Consensus 146 ~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s------------~~~ 213 (490)
-+|.|+|....|...-.|..++|||+.+-...++... .+ .|+..|+.+.-- |.
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s------~l--------yHS~ciW~Ve~~p~nv~~~~~aclp~- 392 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS------ML--------YHSACIWDVENLPCNVHSPTAACLPR- 392 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceee------ee--------eccceeeeeccccccccCcccccCCc-
Confidence 4778999999998889999999999976543322110 01 122233332211 22
Q ss_pred CEEEEEeCCCeEEEEECCC----ceeE----------------------------------EecCCCCCEEEEEecCCCC
Q 011224 214 TLLATGSYDGQARIWSTNG----DLKC----------------------------------TLSKHKGPIFSLKWNKKGD 255 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~----~~~~----------------------------------~~~~h~~~V~~l~~~~~~~ 255 (490)
..|++++.|++||+|++.. .... ........+.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 2488999999999999754 1100 0001234689999999999
Q ss_pred EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC----CceEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeE
Q 011224 256 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNC 330 (490)
Q Consensus 256 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~ 330 (490)
+|++|..-|++++|++..-++...++.|...+.++.|.. +..+++++.|..|.++|...+ .+++++.+|...|++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 999999999999999999988889999999999998864 456889999999999998765 467889999999999
Q ss_pred EEEcCCC--CEEEEEeCCCeEEEEecCC----Ccee--eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 331 VKWDPTG--SLLASCSDDVTAKIWNMKQ----DKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 331 v~~~~~~--~~l~s~~~dg~i~iwd~~~----~~~~--~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
+.|-..| ..+++|+.|..|.+ +... +... ++-......++.++..|... ++++++.|.+|+|
T Consensus 553 vKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k---------~v~t~cQDrniri 622 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK---------LVVTVCQDRNIRI 622 (1080)
T ss_pred EEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcc---------eEEEEecccceEE
Confidence 9998877 66889999987754 3322 1111 11111234678888888765 7899999999999
Q ss_pred EeCCCCeEEEEeeC---CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC-EEEEEECCCCCEEEEEE
Q 011224 403 WDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACF 478 (490)
Q Consensus 403 wd~~~~~~~~~~~~---h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-v~~~~~~~~g~~la~~~ 478 (490)
||+.+++....+++ |.+..-.+...|.|.|||+...|+++.++|+.+|+++.+..+|+. |+.+-|.+|=++|++.+
T Consensus 623 f~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 623 FDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred EeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec
Confidence 99999999999875 556677889999999999999999999999999999998888764 89999999999999999
Q ss_pred CCCcEEEEEe
Q 011224 479 ANHTVCVLDF 488 (490)
Q Consensus 479 ~d~~v~v~~~ 488 (490)
.||+|.||-+
T Consensus 703 gDgCIFvW~l 712 (1080)
T KOG1408|consen 703 GDGCIFVWKL 712 (1080)
T ss_pred CCceEEEEEC
Confidence 9999999976
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1e-27 Score=227.42 Aligned_cols=345 Identities=25% Similarity=0.390 Sum_probs=253.6
Q ss_pred ceeeccccccceeEEEECCCCC---EEEEEECCCcEEEEecCCCCCCC---------CCCCCCceeEEEEee------ec
Q 011224 134 DVTILEGHTSEVCACAWSPAGS---LLASGSGDSTARIWTIADGTSNG---------GAQNGPLNVLVLKHV------KG 195 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~---~l~sgs~D~~i~~Wd~~~~~~~~---------~~~~~~~~~~~~~~~------~~ 195 (490)
.+..|.||.+.|++++|...+. +|||+|.|..||||.+.-+.... .....+.. ..+..+ ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f-~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVF-MILEEIQYRISFEA 261 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCcee-eeeeeEEEEEehhh
Confidence 4568899999999999988654 89999999999999875332111 00111100 011111 12
Q ss_pred ccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc---ee-----EEecCCCCCEEEEEecCCCCEEEEEeCCCeEE
Q 011224 196 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LK-----CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 267 (490)
Q Consensus 196 ~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---~~-----~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~ 267 (490)
-..+|..-|.++.|+|.+..|++++.|.++.+|..... -. -...+..+.-++.-|+|+++.+++-+.-|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 33478899999999999999999999999999986543 11 12234455689999999999999999999999
Q ss_pred EEEcc-CcceeE--eeeeeccCeEEEEccCC-ceEEEEcCCCeEEEEEcCCCcc-eeEe---cCCCCCeeEEEEcCCCCE
Q 011224 268 VWDVK-TEEWKQ--QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKTF---AGHQGEVNCVKWDPTGSL 339 (490)
Q Consensus 268 iwd~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~~---~~h~~~v~~v~~~~~~~~ 339 (490)
+|-.. ...|.+ .+.+|...|.+++|.+. ..+++.+.|.+-+++-....+. -..+ .-|...++|++|-+....
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 99732 233333 34678889999999764 4556788999888876542211 1111 236778999999886667
Q ss_pred EEEEeCCCeEEEEecCC-------------------------------------------Cce-----------------
Q 011224 340 LASCSDDVTAKIWNMKQ-------------------------------------------DKY----------------- 359 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~-------------------------------------------~~~----------------- 359 (490)
|++|.+...+|+|+... +..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 88999999999997421 000
Q ss_pred ----------------eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC-----cEEEEeCCCCeEEEEeeCCC
Q 011224 360 ----------------VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-----TVKLWDVELGKLLYSLNGHR 418 (490)
Q Consensus 360 ----------------~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~h~ 418 (490)
++.+.+|.-.|++++.+|++. ++||++... .|++|+..+...+..+.+|.
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn---------liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs 572 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN---------LIASACKSSLKEHAVIRLWNTANWLQVQELEGHS 572 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC---------EEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence 011234556678888888775 788876543 59999999999889999999
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE-EE---EEecCCC-EEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 419 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VK---TYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~-~~---~~~~~~~-v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
-.|+.|+|||||+||++.|.|.++.+|....... .. ....|.+ |++++|+|++.++|+|+.|++|.||..
T Consensus 573 LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 573 LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 9999999999999999999999999999854322 11 1233444 799999999999999999999999964
No 101
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.5e-28 Score=208.22 Aligned_cols=281 Identities=20% Similarity=0.356 Sum_probs=227.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------ceeEEecCCCCCEEEEEecCCCCEEEE
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLT 259 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~~~l~s 259 (490)
.|..++.+.+||+||.++++|+.|..|+|.|++. ..+.++..|..+|..|.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 4567899999999999999999999999999651 134567789999999999999999999
Q ss_pred EeCCCeEEEEEccCcceeEee--eeeccCeEEEEccCCceEEE-EcCCCeEEEEEcCCCcceeEe---cCCCCCeeEEEE
Q 011224 260 GSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDVDWRNNVSFAT-SSTDNMIYVCKIGENRPIKTF---AGHQGEVNCVKW 333 (490)
Q Consensus 260 ~s~D~~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~---~~h~~~v~~v~~ 333 (490)
|+.|++|+++|.......+.+ .....++.++.|++...|+. +.+-.++++||+.+-++.... .+|.+.|++|.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999998654433322 23456788999988776654 555678999999886654333 368999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCceeeeec-ccc-ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE
Q 011224 334 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 411 (490)
Q Consensus 334 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 411 (490)
++.+++.+||+.||.|+|||--+++++.++. +|. ..|.+..|..++. ++++.+.|..+++|.+.+++++
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k---------yiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK---------YILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe---------EEeecCCcceeeeeeecCCceE
Confidence 9999999999999999999999999998875 343 4688889998886 8889999999999999999999
Q ss_pred EEeeCCC-----CCEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEEEE--ecCCCEEEEEECCCCCEEEEEECCCcE
Q 011224 412 YSLNGHR-----EPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 412 ~~~~~h~-----~~v~~l~~spdg~~l~s~-s~dg~i~iw~~~~~~~~~~~--~~~~~v~~~~~~~~g~~la~~~~d~~v 483 (490)
.+..|-. .--+...|+....|++.- -..+.+.-||.+++..+..+ .+++.+..+.-||.+.-+++|+.|..+
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRA 420 (430)
T ss_pred EEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccccee
Confidence 8887541 123456677777776653 23577999999988654443 456778899999999999999999999
Q ss_pred EEEEe
Q 011224 484 CVLDF 488 (490)
Q Consensus 484 ~v~~~ 488 (490)
++|==
T Consensus 421 RFWyr 425 (430)
T KOG0640|consen 421 RFWYR 425 (430)
T ss_pred eeeee
Confidence 99953
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=215.12 Aligned_cols=235 Identities=25% Similarity=0.386 Sum_probs=203.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
..++++...+....+++|+.|.++.++|... +...++.||+..|+.+.|+|+...+++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----- 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----- 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-----
Confidence 4578888888878999999999999999764 5567899999999999999999999999999999999764432
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 360 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 360 (490)
.......|..+|+.+..+|.|.||++++.||++.+.|++++..+
T Consensus 295 ------------------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l 338 (506)
T KOG0289|consen 295 ------------------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL 338 (506)
T ss_pred ------------------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence 11234568999999999999999999999999999999999887
Q ss_pred eeecc--ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeC
Q 011224 361 HDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 361 ~~~~~--~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
..... ..-.+++.+|+|+|- +|.+|..||.|+|||+.++..+..|.+|.++|..|+|+.+|.|||++..
T Consensus 339 t~vs~~~s~v~~ts~~fHpDgL---------ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 339 TVVSDETSDVEYTSAAFHPDGL---------IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred EEEeeccccceeEEeeEcCCce---------EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 65543 234589999999994 8999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCeEEEEEecCC--CEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 439 DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 439 dg~i~iw~~~~~~~~~~~~~~~--~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
|+.|++||+++-+..+++.-.. .+.+++|.+.|.+|++++.+-+|+++
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 9999999999888888876533 59999999999999999776444443
No 103
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3e-28 Score=211.50 Aligned_cols=238 Identities=22% Similarity=0.420 Sum_probs=203.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeE--------EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~--------~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 271 (490)
...+-|..|||||+||++|+.||.|.+|+... +... .|--+..+|.|+.|+.+...|++|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 45688999999999999999999999999543 2211 34457889999999999999999999999999999
Q ss_pred cCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
+++.+.+.|. +.|+..|+|+.|+.|+..+++++.|.++||
T Consensus 293 ~tG~ClRrFd----------------------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 293 ETGQCLRRFD----------------------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred ecchHHHHhh----------------------------------------hhhccCeeEEEEccCcchhhcccccceEEE
Confidence 8887655432 268888999999999999999999999999
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC--CCCCEEEEEECCC
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPT 429 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spd 429 (490)
-.+++++++.++++|..-|....|.++|. .++++|.||+|++|+..+..++.+++. ...+|+++-.-|.
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~---------~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGH---------HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCC---------eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 99999999999999999999999999997 789999999999999999999888764 4457888877775
Q ss_pred C-CEEEEEeCCCcEEEEEcCCCeEEEEEec----CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 430 G-EYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 430 g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~----~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
. ..++.+...++|.|-++ .|++++++.. .+...+++.+|.|.++...+.|+.+.-+.+
T Consensus 404 npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 4 57888899999999987 4788888854 245778899999999999999987766654
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.6e-28 Score=202.59 Aligned_cols=254 Identities=25% Similarity=0.404 Sum_probs=197.7
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC--CCC
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGT 214 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~~ 214 (490)
+-.+|.+.|+.+...--|++|||++.|++|||+.+.++.. . . ......+|++||.-++|-. -|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------s--~----ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------S--K----LLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------c--e----eeeEecCCCCCeeEEeecccccCc
Confidence 3457999999999888899999999999999999875431 0 1 1123346789999999976 799
Q ss_pred EEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCC--CEEEEEeCCCeEEEEEccCc-ceeEeeeeeccCeE
Q 011224 215 LLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTL 288 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~ 288 (490)
+|+|+++||.|.||..++. .......|...|.+++|.|.+ -.|+++++||.|.|.+.+.. .+..
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t---------- 141 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT---------- 141 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc----------
Confidence 9999999999999997754 334677899999999999875 57889999999999987653 1110
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC---C-----------CEEEEEeCCCeEEEEec
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---G-----------SLLASCSDDVTAKIWNM 354 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~-----------~~l~s~~~dg~i~iwd~ 354 (490)
-+....|.-.|++++|.|- | +.|++|+.|..|+||+.
T Consensus 142 -----------------------------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~ 192 (299)
T KOG1332|consen 142 -----------------------------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF 192 (299)
T ss_pred -----------------------------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec
Confidence 1123456666777777664 3 56999999999999998
Q ss_pred CCCce--eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE---EEEeeCCCCCEEEEEECCC
Q 011224 355 KQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 355 ~~~~~--~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~spd 429 (490)
..+.. -++|.+|...|+.++|.|.... .+..||++|.||++.||-.+.... ...+.....+++.++||+.
T Consensus 193 ~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s 267 (299)
T KOG1332|consen 193 DSDSWKLERTLEGHKDWVRDVAWAPSVGL-----PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS 267 (299)
T ss_pred CCcchhhhhhhhhcchhhhhhhhccccCC-----CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc
Confidence 87643 3458899999999999997532 235899999999999998763211 1123345578999999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 011224 430 GEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 430 g~~l~s~s~dg~i~iw~~~ 448 (490)
|++|+.++.|+.|.+|.-.
T Consensus 268 Gn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 268 GNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccEEEEecCCcEEEEEEeC
Confidence 9999999999999999754
No 105
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-27 Score=223.72 Aligned_cols=295 Identities=24% Similarity=0.378 Sum_probs=233.8
Q ss_pred CCcceecCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCC
Q 011224 124 ASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 203 (490)
Q Consensus 124 ~~~~~~~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (490)
+.....+|..+...++||++.|+|++..|.|.+|++||.||+||||.+.++.++. ++.- ...
T Consensus 382 p~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr-------------~~~~-----d~~ 443 (733)
T KOG0650|consen 382 PKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR-------------TVQF-----DSE 443 (733)
T ss_pred hhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE-------------EEee-----cce
Confidence 3444556778888999999999999999999999999999999999999886532 2211 246
Q ss_pred eEEEEEcCCCCE--EEEEeCCC--------------------------------eEEEEECCC-----ceeEEecCCCCC
Q 011224 204 VTTLDWNGEGTL--LATGSYDG--------------------------------QARIWSTNG-----DLKCTLSKHKGP 244 (490)
Q Consensus 204 V~~~~~s~~~~~--l~sg~~dg--------------------------------~i~iw~~~~-----~~~~~~~~h~~~ 244 (490)
|.|++|+|.+.. ||.+-... .+..|.... .-++....|..+
T Consensus 444 I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~ 523 (733)
T KOG0650|consen 444 IRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKS 523 (733)
T ss_pred eEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCc
Confidence 999999987643 33332222 222333210 012344568899
Q ss_pred EEEEEecCCCCEEEEEeCC---CeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe
Q 011224 245 IFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 321 (490)
Q Consensus 245 V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 321 (490)
|..|.||..|.||++...+ ..|.|+++........|....+.+..+.|++...++..++...|++|++.....++.+
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL 603 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKL 603 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHH
Confidence 9999999999999987654 6789999987776666777778889999988877777777889999999887777777
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC-CceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcE
Q 011224 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 400 (490)
Q Consensus 322 ~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i 400 (490)
......|..+++||.|..|+.|+.|+.+..+|+.- .++.++++.|...+++++|++.-. ++++|+.||++
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP---------Lfas~sdDgtv 674 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP---------LFASGSDDGTV 674 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc---------eeeeecCCCcE
Confidence 76777899999999999999999999999999874 467888999999999999988654 89999999999
Q ss_pred EEEeCCC---------CeEEEEeeCCCCC----EEEEEECCCCCEEEEEeCCCcEEEE
Q 011224 401 KLWDVEL---------GKLLYSLNGHREP----VYSLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 401 ~iwd~~~---------~~~~~~~~~h~~~----v~~l~~spdg~~l~s~s~dg~i~iw 445 (490)
.||.-.. --++..+.+|... |.++.|+|.-.+|+++|.||+|++|
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9985321 1245667888755 8999999999999999999999998
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-26 Score=201.16 Aligned_cols=260 Identities=17% Similarity=0.348 Sum_probs=209.2
Q ss_pred EEEEeCCCeEEEEECCCc-------------eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee
Q 011224 216 LATGSYDGQARIWSTNGD-------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~-------------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
|+.|++...|.-+++... ....+..|.+++++|+. ++.+++|||.|-+|+|||++.......+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 567777777766654321 12356789999999987 478999999999999999999988888889
Q ss_pred eccCeEEEEccCCc---eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 283 HSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 283 ~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
|.+.+.++.|.... .+++++.||.|.+|+.+....+..+++|.+.|+.+++||.|++-++.+.|+.+++|++-+++.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 99999999987655 799999999999999999999999999999999999999999999999999999999988876
Q ss_pred eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 360 ~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
-..++-. ...+.+.|+|.|. +++.++. ..|-+|.+.+.+....+... ..+.++.|- ++.+|++|+.|
T Consensus 162 a~v~~L~-~~at~v~w~~~Gd---------~F~v~~~-~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~ 228 (362)
T KOG0294|consen 162 AFVLNLK-NKATLVSWSPQGD---------HFVVSGR-NKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN 228 (362)
T ss_pred ceeeccC-CcceeeEEcCCCC---------EEEEEec-cEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC
Confidence 4443322 2234489999986 4454544 46889988876655544422 446777775 56789999999
Q ss_pred CcEEEEEcCCCeEEEEEecCC-CEEEEE--ECCCCCEEEEEECCCcEEEEEeeC
Q 011224 440 KSMHIWSLKEGKIVKTYTGNG-GIFEVC--WNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~~~~-~v~~~~--~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
+.|.+||..+......+..|. +|-++. =+|++.+|++++.||.|+|||++|
T Consensus 229 ~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 229 EWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 999999999887777776554 466655 367889999999999999999986
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=3.7e-27 Score=213.93 Aligned_cols=257 Identities=26% Similarity=0.523 Sum_probs=202.5
Q ss_pred ccccccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC-CCE
Q 011224 138 LEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTL 215 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-~~~ 215 (490)
.-.|.+.|+.+++-|+. ..+||++..+.|.|||................-+ .+.+| .+.-+.|+|++. .-.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl---~L~gH----~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDL---RLKGH----EKEGYGLSWNRQQEGT 192 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCce---EEEee----ccccccccccccccee
Confidence 34599999999999985 5778888999999999876543332211100011 12233 333566999984 457
Q ss_pred EEEEeCCCeEEEEECCCc--------eeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccC
Q 011224 216 LATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 286 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 286 (490)
|++|+.|++|++||++.. ....+.+|...|..++|++.. ..|.+++.|+.+.|||+++..
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~----------- 261 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT----------- 261 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-----------
Confidence 899999999999997532 345688999999999999965 467899999999999998631
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCC-ceeeeec
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQD-KYVHDLR 364 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~-~~~~~~~ 364 (490)
.++.....+|.++|+|++|+|-+ .+|||||.|++|.+||++.- ++++++.
T Consensus 262 ----------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 262 ----------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred ----------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 22334556899999999999954 66899999999999999875 4678899
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC--------------CeEEEEeeCCCCCEEEEEECCCC
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAFSPTG 430 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~spdg 430 (490)
.|...|..|.|+|+.. .+||+++.|+.+.+||+.. .++++.-.||...|..+.|+|+.
T Consensus 314 ~H~dev~~V~WSPh~e--------tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNE--------TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred CCCcceEEEEeCCCCC--------ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 9999999999999865 4899999999999999853 13567888999999999999998
Q ss_pred CE-EEEEeCCCcEEEEEcC
Q 011224 431 EY-LASGSLDKSMHIWSLK 448 (490)
Q Consensus 431 ~~-l~s~s~dg~i~iw~~~ 448 (490)
.+ |+|.+.|+.+.||...
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 76 5788999999999865
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=4.7e-25 Score=202.17 Aligned_cols=312 Identities=21% Similarity=0.363 Sum_probs=230.6
Q ss_pred ccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 142 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 142 ~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
...|..+.|+|.+. ++.|. ..+.+.+|++..+...+. ...+.. .. .+.|+|++|.++|. +++|.
T Consensus 200 ne~v~~a~FHPtd~nliit~-Gk~H~~Fw~~~~~~l~k~----------~~~fek--~e-kk~Vl~v~F~engd-viTgD 264 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITC-GKGHLYFWTLRGGSLVKR----------QGIFEK--RE-KKFVLCVTFLENGD-VITGD 264 (626)
T ss_pred cceEEEEEeccCCCcEEEEe-CCceEEEEEccCCceEEE----------eecccc--cc-ceEEEEEEEcCCCC-EEeec
Confidence 45678899999765 55555 558899999876542110 001111 12 27799999999987 56999
Q ss_pred CCCeEEEEECCCce-eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee-EeeeeeccCeEEEEccCCceE
Q 011224 221 YDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWRNNVSF 298 (490)
Q Consensus 221 ~dg~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 298 (490)
.+|+|.||+..+.. ......|.+.|++|+...+|. |+||+.|+.|..||-.-.+.. ..+....+++..+.-.... +
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d-i 342 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD-I 342 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCc-E
Confidence 99999999986543 333448999999999999885 566999999999983221111 1222334556555543333 5
Q ss_pred EEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCC
Q 011224 299 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~ 378 (490)
..+...+.|..=.+.....+ ...+|......++.+|+...++|++.|+.+++|+ ..++.-+. ....++.++.|+|.
T Consensus 343 ~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhps 418 (626)
T KOG2106|consen 343 LVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPS 418 (626)
T ss_pred EEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCc
Confidence 55555556555555444333 4458989999999999999999999999999999 44444332 23567889999998
Q ss_pred CCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEE---E
Q 011224 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KIV---K 454 (490)
Q Consensus 379 g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~-~~~---~ 454 (490)
| .+|.|...|...+.|+++...+..-.. ..+++.++|+|+|.+||.||.|+.|+||-+... ... .
T Consensus 419 g----------~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 419 G----------VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred c----------eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 8 589999999999999998665555444 889999999999999999999999999998753 332 2
Q ss_pred EEecCCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 455 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 455 ~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
.+.+ ..|+.+.|++|+++|.+-+.|-.|-.|
T Consensus 488 k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 488 KCSG-SPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eecC-ceeEEeeecCCCceEEeccCceEEEEE
Confidence 3334 569999999999999999999888888
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=9.7e-28 Score=220.23 Aligned_cols=252 Identities=23% Similarity=0.399 Sum_probs=191.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcee------EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~------~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 272 (490)
.+++.|+++++.|.|..|+||+.|-.|++||..+.-. .........|.++.|++.+..|++.+.....+|+|-.
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 4578899999999999999999999999999876311 1122344578999999999999999989999999966
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEE
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKI 351 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~i 351 (490)
..++.....+. . |+-| +..-+||...++|.+|+|.. ..|+|++.||++||
T Consensus 245 G~~~~e~~KGD---------------------Q--YI~D------m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 245 GFEIVEFSKGD---------------------Q--YIRD------MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred Cceeeeeeccc---------------------h--hhhh------hhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 55544332211 1 1111 22346899999999999986 46899999999999
Q ss_pred EecCCCce-eeeec-----cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE---EEEeeCCCC--C
Q 011224 352 WNMKQDKY-VHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHRE--P 420 (490)
Q Consensus 352 wd~~~~~~-~~~~~-----~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~--~ 420 (490)
||+...+. ...++ +..-++++++|+|+|. ++|+|..||.|.+|+...... ...-.+|.. .
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~---------~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK---------LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCCCcc---------hhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 99875432 22222 1233678999999997 699999999999999864322 233456776 8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEEEEec---CCCEEEEEECCCCCEEEEEEC------CCcEEEEEe
Q 011224 421 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTG---NGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 488 (490)
Q Consensus 421 v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~-~~~~~~~---~~~v~~~~~~~~g~~la~~~~------d~~v~v~~~ 488 (490)
|++|+||+||++|++-|.|+++++||+++.+ .+.+..+ .-.-+.++|||+.++|++|.. -+++++||-
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 9999999999999999999999999999754 3444443 223578999999999999843 356788774
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.1e-28 Score=218.89 Aligned_cols=240 Identities=23% Similarity=0.355 Sum_probs=209.9
Q ss_pred EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc--eeEeeeeeccCeEEEEcc-CCceEEEEcCCCeEEEEEcC
Q 011224 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIG 313 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~ 313 (490)
.+..|.+.|..+.|-++...|++|+.|..|++|+....+ .+.++.+..+++..++|. ++..+++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 466899999999999999999999999999999987666 667778888899999995 56778889999999999999
Q ss_pred CCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEE
Q 011224 314 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 393 (490)
Q Consensus 314 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~s 393 (490)
..+...++.||+..|+++.|......+++|+.|.+|++||+....+..++.. ...+..|..++ ..++|
T Consensus 250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~-----------~~~~S 317 (459)
T KOG0288|consen 250 SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSI-----------SDVIS 317 (459)
T ss_pred chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEecc-----------eeeee
Confidence 9999999999999999999988777799999999999999998877766543 33455555442 25789
Q ss_pred EECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-----CCEEEEEEC
Q 011224 394 ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-----GGIFEVCWN 468 (490)
Q Consensus 394 gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-----~~v~~~~~~ 468 (490)
|-.|++||+||.+...++.++..+. .|++|..+++|.-|.+++.|.++.+.|+++..+.+++... ..++.+.||
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred cccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 9999999999999999999998775 8999999999999999999999999999999888888543 247889999
Q ss_pred CCCCEEEEEECCCcEEEEEee
Q 011224 469 KEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 469 ~~g~~la~~~~d~~v~v~~~~ 489 (490)
|++.|+|+|+.||.|+||++.
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred CCCceeeeccCCCcEEEEEcc
Confidence 999999999999999999974
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=200.08 Aligned_cols=247 Identities=26% Similarity=0.490 Sum_probs=193.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC----ceeEEecCCCCCEEEEEecC--CCCEEEEEeCCCeEEEEEccC
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~ 273 (490)
|...|..+...--|+.|++++.|++|+|+.... .+..++.+|.+||+.++|.. -|..|++|+.||.|.||.-.+
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~ 89 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN 89 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence 344555555556689999999999999998653 45678999999999999965 789999999999999998766
Q ss_pred cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEE
Q 011224 274 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 351 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~i 351 (490)
+.+.+ ...+..|...|++++|-|. |-+|++++.||.|.|
T Consensus 90 g~w~k---------------------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 90 GRWTK---------------------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred Cchhh---------------------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 65432 2345678999999999886 467999999999999
Q ss_pred EecCCC-ce--eeeeccccccEEEEEEcCCCCC---CCC-CC-CcEEEEEEECCCcEEEEeCCCCe--EEEEeeCCCCCE
Q 011224 352 WNMKQD-KY--VHDLREHSKEIYTIRWSPTGSG---TNN-PN-QQLILASASFDSTVKLWDVELGK--LLYSLNGHREPV 421 (490)
Q Consensus 352 wd~~~~-~~--~~~~~~~~~~i~~v~~~p~g~~---~~~-~~-~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v 421 (490)
.+++.. .. ......|.-.|.+++|.|.... ..+ +. .-.-|++|+.|..|+||+..+++ .-.++.+|.+.|
T Consensus 131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV 210 (299)
T ss_pred EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence 988765 11 2334578889999999997321 111 11 12358999999999999988763 223488999999
Q ss_pred EEEEECCCC----CEEEEEeCCCcEEEEEcCCC------eEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 422 YSLAFSPTG----EYLASGSLDKSMHIWSLKEG------KIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 422 ~~l~~spdg----~~l~s~s~dg~i~iw~~~~~------~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
..++|.|.- .+||++|.||+|.||..... +++.. ....++.++||+.|+.||.++.|..|.+|-
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 999999974 57999999999999987631 23333 245699999999999999999999999983
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=225.68 Aligned_cols=231 Identities=24% Similarity=0.438 Sum_probs=199.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-------eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 211 GEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
|.++||+|||.||.|++|+.... ....+..|.+-|..+....+++.|+|||.|-+|++|+.....
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--------
Confidence 46788999999999999986431 234677899999999998899999999999999999975431
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEE-cCCCCEEEEEeCCCeEEEEecCCC--cee
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWNMKQD--KYV 360 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s~~~dg~i~iwd~~~~--~~~ 360 (490)
..++.++..|..+|.|+++ -++..++|+||-|+.|.+||++++ ..+
T Consensus 107 -------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~ 155 (735)
T KOG0308|consen 107 -------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLV 155 (735)
T ss_pred -------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhh
Confidence 0123456789999999999 788899999999999999999977 222
Q ss_pred ee--------ec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC
Q 011224 361 HD--------LR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 431 (490)
Q Consensus 361 ~~--------~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 431 (490)
.+ +. ++...|++++-.+.|. ++++|+..+.|++||.++++.+..+.||+..|..|..++||.
T Consensus 156 ~s~n~~t~~sl~sG~k~siYSLA~N~t~t---------~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 156 ASFNNVTVNSLGSGPKDSIYSLAMNQTGT---------IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred hhccccccccCCCCCccceeeeecCCcce---------EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence 22 22 5667899999888874 899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 432 YLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+++||.||+|++||+...+++.++..+ .+|+++.-+|+=+++.+|+.|+.|..=|+|
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 9999999999999999999999998654 469999999999999999999999887776
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=5e-25 Score=202.02 Aligned_cols=325 Identities=20% Similarity=0.314 Sum_probs=245.3
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCC--------cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDS--------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 205 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~--------~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 205 (490)
..+.+.||+..|-|++.||+.-.+++|-.-| .+++||..+-. .+..+ + .-...|+
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~----------TL~V~----g---~f~~GV~ 158 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS----------TLHVI----G---FFDRGVT 158 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce----------eeeee----c---cccccce
Confidence 3456779999999999999999999886655 49999954311 11111 1 2245799
Q ss_pred EEEEcC--CCCEEEEE--eCCCeEEEEECCCce-eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe-
Q 011224 206 TLDWNG--EGTLLATG--SYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ- 279 (490)
Q Consensus 206 ~~~~s~--~~~~l~sg--~~dg~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~- 279 (490)
|++||+ .|.+++.- +.+..+.+||...+. .......+..|....|+|.+..|+.....+.+.+|+++++.+.+.
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~ 238 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQ 238 (626)
T ss_pred eeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEe
Confidence 999997 35555543 445678899976432 223344566788999999876665555578999999998876553
Q ss_pred --eeee-ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 280 --FEFH-SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 280 --~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
|+.+ ..-+.++.|..+...+++..+|.|.+|+.+..+..+....|.+.|.+++.-.+|.+|- |+.|..|..||-.-
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY 317 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence 3322 2458899999999999999999999999988887776669999999999999998765 99999999998321
Q ss_pred Cce-----------eee-----------------------------eccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 357 DKY-----------VHD-----------------------------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 357 ~~~-----------~~~-----------------------------~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
.+. +++ ..+|......++.+|.. ..+++++.
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~---------~q~~T~gq 388 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK---------NQLLTCGQ 388 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh---------hheeeccC
Confidence 110 000 11233333444444433 26889999
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEE
Q 011224 397 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 476 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~ 476 (490)
|+.+++|+ ..++.++.. -..++.++.|+|.| .||.|+..|...+.|.++..++.....+..+..++|+|+|.+||.
T Consensus 389 dk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence 99999999 566666654 45789999999999 999999999999999999877777666778999999999999999
Q ss_pred EECCCcEEEEEee
Q 011224 477 CFANHTVCVLDFR 489 (490)
Q Consensus 477 ~~~d~~v~v~~~~ 489 (490)
|+.|+.|.+|-+.
T Consensus 465 gs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 465 GSHDNHIYIYRVS 477 (626)
T ss_pred ecCCCeEEEEEEC
Confidence 9999999999764
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.3e-27 Score=202.73 Aligned_cols=273 Identities=25% Similarity=0.396 Sum_probs=214.7
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc---
Q 011224 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--- 272 (490)
Q Consensus 197 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--- 272 (490)
+.+|...|+.++-...-..+.+++.|.+.+||.++. .+...+.+|.+.|.+++|++.+..++++|.|++..||...
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence 445667788887766667899999999999999874 5677899999999999999999999999999999999521
Q ss_pred -CcceeEeeeeeccCeEEEEc-cCCceEEEE---cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC
Q 011224 273 -TEEWKQQFEFHSGPTLDVDW-RNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 347 (490)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 347 (490)
....... ..|.+. -.... ........+ ++..+|+ .|+..|.||.+.|.+..|-..|+.+++++.|.
T Consensus 224 ~vP~~~a~-~~hSsE-eE~e~sDe~~~d~d~~~~sD~~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 224 EVPSNNAP-SDHSSE-EEEEHSDEHNRDTDSSEKSDGHTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred cCCCCCCC-CCCCch-hhhhcccccccccccccccCCceee-------eeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 1000000 000000 00000 011111111 1112333 46778999999999999999999999999999
Q ss_pred eEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEE
Q 011224 348 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 348 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~ 426 (490)
+..+||+.++.+++.+.+|....+.++-+|... ++++.+.|-+.++||.+.. ..+..|.||...|+++.|
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQr---------LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQR---------LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcce---------EEEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 999999999999999999999888877666543 7889999999999999833 456789999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCe-EEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.-+. .+++||.|.+|+|||+++.+ .+.++.....++.++.+..+..+|.-..|+.|++||+
T Consensus 366 ~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 366 NTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 8764 58999999999999999864 5788888888999999999999999999999999997
No 115
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-26 Score=195.42 Aligned_cols=283 Identities=22% Similarity=0.380 Sum_probs=206.4
Q ss_pred ccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC--CCCE
Q 011224 138 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTL 215 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~~~ 215 (490)
-.+|.+-|+++.|.+-|+.+||+|.|++|+|||..+.... . .+..+...|.+.|..+.|-+ =|+.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---------W----~~Ts~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---------W----SCTSSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---------e----EEeeeEEecCCcEEEEEecCccccce
Confidence 3579999999999999999999999999999997544321 1 11223344678899999965 4899
Q ss_pred EEEEeCCCeEEEEECCC----------ceeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 216 LATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
++++++|+++.||.... ...+++....+.|+.++|.|. |-.|++++.||++|||+...---
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n------- 148 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN------- 148 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-------
Confidence 99999999999997521 123466777889999999985 56789999999999998643211
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCc--ceeEecCCCCCeeEEEEcCC---CCEEEEEeCC-----CeEEEEe
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPT---GSLLASCSDD-----VTAKIWN 353 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d-----g~i~iwd 353 (490)
+.-|.+.... .+.....+..+..|+.|+|. .++||.|+.+ +.+.||.
T Consensus 149 -----------------------Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 149 -----------------------LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred -----------------------cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 1112221110 01112235567789999874 3678888876 4788887
Q ss_pred cCCC----ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC--------------------e
Q 011224 354 MKQD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------------------K 409 (490)
Q Consensus 354 ~~~~----~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--------------------~ 409 (490)
.... ..+.++..|..+|+.|+|.|+-.. ...+||+++.|| |+||++... +
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr-----~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGR-----SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCC-----ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 6543 235677889999999999997532 234899999999 999998631 2
Q ss_pred EEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC---CCeEEEEEecCCCEEEEEECC
Q 011224 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK---EGKIVKTYTGNGGIFEVCWNK 469 (490)
Q Consensus 410 ~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~---~~~~~~~~~~~~~v~~~~~~~ 469 (490)
.+..+.+|.+.|+.+.|+-.|..|++.|.||.|++|... ..+++..+..++.+....+++
T Consensus 280 ~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~~ 342 (361)
T KOG2445|consen 280 KVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFSQ 342 (361)
T ss_pred EeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCccccc
Confidence 345678899999999999999999999999999999854 234555555555555444443
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=5.3e-26 Score=195.19 Aligned_cols=299 Identities=19% Similarity=0.346 Sum_probs=228.2
Q ss_pred eccccccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCC
Q 011224 137 ILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT 214 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~ 214 (490)
.-+.|.++|+++.+.+- |+++++|+.||.|.+||+++.........- ..-.++ ..+.+.+.|...|.++.|-| |.-
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k~~c~-v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AKHKCI-VAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eheeee-ccccCCccceeeeeeeEEeeecCc
Confidence 34569999999999995 899999999999999999865421110000 000010 12345677889999999998 667
Q ss_pred EEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCC---CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 215 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+|.+++.|.+++|||++..+........+.|++-+|+|-. ..+++|..|-.|++-|+.++.+..++.+|.+.++++.
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred eeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8999999999999999886665555677889999999853 3567788888999999999999999999999999999
Q ss_pred ccCC--ceEEEEcCCCeEEEEEcCCC-cce--------------eEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEec
Q 011224 292 WRNN--VSFATSSTDNMIYVCKIGEN-RPI--------------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 354 (490)
Q Consensus 292 ~~~~--~~~~~~~~d~~i~~~~~~~~-~~~--------------~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~ 354 (490)
|.+. ..+++++.|+.+++||++.. .+. +.-..|.+.|++++|..++.++++++.|..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9764 45678999999999998753 111 123367889999999999999999999999999998
Q ss_pred CCCceee-eec--cccccEEEEEEc---CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 355 KQDKYVH-DLR--EHSKEIYTIRWS---PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 355 ~~~~~~~-~~~--~~~~~i~~v~~~---p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
..++... .+- .|... ..+++. -+.. +++---.++.+.++++..+..+..+.+|...|.+.+|.|
T Consensus 276 ~~G~ntl~~~g~~~~n~~-~~~~~~~~~~~s~---------vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~ 345 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQT-TSFAVHIQSMDSD---------VFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP 345 (397)
T ss_pred ccCccccccccccccccc-ccceEEEeecccc---------eEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC
Confidence 7765321 110 01110 111111 1111 233334568999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 011224 429 TGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~ 447 (490)
+=+-+.+|..|+.|..|..
T Consensus 346 ~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 346 DFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred chhhhhccccCCccccccc
Confidence 9889999999999999986
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.1e-27 Score=226.80 Aligned_cols=288 Identities=23% Similarity=0.382 Sum_probs=223.0
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCCEEEEEeCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYD 222 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l~sg~~d 222 (490)
..++|+..++-..|+.+|. ..++||.+....... +.+... +...........+.|+. +.++|++++.+
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~-----~~~~~~-----k~kqn~~~S~~DVkW~~~~~NlIAT~s~n 109 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSE-----KCNHRF-----KTKQNKFYSAADVKWGQLYSNLIATCSTN 109 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCc-----ceeeec-----ccccceeeehhhcccccchhhhheeecCC
Confidence 3567777888777776654 568888775432111 111110 11112233455677875 56899999999
Q ss_pred CeEEEEECCC----ceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc--CC
Q 011224 223 GQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NN 295 (490)
Q Consensus 223 g~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 295 (490)
|.|.+||++. .+...|..|+..|.++.|++.. ++|+|||.||+|++||++...-+.++......+.++.|. ..
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence 9999999875 3345788999999999999865 678999999999999999999888888888888888885 46
Q ss_pred ceEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeeeccccccEEE
Q 011224 296 VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYT 372 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~ 372 (490)
..|+++.+.|.+..||++.. ++...+..|.++|.|+.|+|++.+|||||.|++|+|||+.+.+. ..++ ....++.+
T Consensus 190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~r 268 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGR 268 (839)
T ss_pred ceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeee
Confidence 78999999999999999865 56778899999999999999999999999999999999986543 2332 23467899
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEE--CCCcEEEEeCCCCe-EEEEeeCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEEcC
Q 011224 373 IRWSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iw~~~ 448 (490)
++|.|... +.||+++ .|-.|+|||++..- +..++..|...++.++|.. |...|.++|.||+|..-.++
T Consensus 269 VkWRP~~~--------~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 269 VKWRPARS--------YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeccCcc--------chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 99999764 4677776 47789999998654 3457888999999999965 45678899999998877766
Q ss_pred CCe
Q 011224 449 EGK 451 (490)
Q Consensus 449 ~~~ 451 (490)
++.
T Consensus 341 nat 343 (839)
T KOG0269|consen 341 NAT 343 (839)
T ss_pred ccc
Confidence 554
No 118
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.3e-26 Score=210.45 Aligned_cols=248 Identities=27% Similarity=0.515 Sum_probs=200.6
Q ss_pred cCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCCc-----------eeEEecCCCCCEEEEEecCCCC-EEEEEeCCCe
Q 011224 199 EKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNGD-----------LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKT 265 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~-----------~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~ 265 (490)
.|.+.|..+.+-|+. .++++++..+.|.|||.... ....+.+|.+.-++|+|++... +|++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 456778888888854 57777888999999996421 2237889999889999998754 6999999999
Q ss_pred EEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEe
Q 011224 266 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS 344 (490)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~ 344 (490)
|.+||+...... . ..-.+...|.+|...|..++|+|.. .+|++++
T Consensus 202 i~lwdi~~~~~~-------~---------------------------~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 202 ICLWDINAESKE-------D---------------------------KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred EEEEeccccccC-------C---------------------------ccccceEEeecCCcceehhhccccchhhheeec
Confidence 999998754210 0 0113456788999999999999864 6789999
Q ss_pred CCCeEEEEecC--CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCE
Q 011224 345 DDVTAKIWNMK--QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPV 421 (490)
Q Consensus 345 ~dg~i~iwd~~--~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v 421 (490)
.|+.+.|||++ +.++.+...+|.+.+.|++|+|.+. ++||+||.|++|++||+|+. +++.++.+|...|
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~--------~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev 319 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE--------FILATGSADKTVALWDLRNLNKPLHTFEGHEDEV 319 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC--------ceEEeccCCCcEEEeechhcccCceeccCCCcce
Confidence 99999999999 5667777889999999999999874 58999999999999999975 4678999999999
Q ss_pred EEEEECCCC-CEEEEEeCCCcEEEEEcCCCe--------------EEEEEecCC-CEEEEEECCCCC-EEEEEECCCcEE
Q 011224 422 YSLAFSPTG-EYLASGSLDKSMHIWSLKEGK--------------IVKTYTGNG-GIFEVCWNKEGD-KIAACFANHTVC 484 (490)
Q Consensus 422 ~~l~~spdg-~~l~s~s~dg~i~iw~~~~~~--------------~~~~~~~~~-~v~~~~~~~~g~-~la~~~~d~~v~ 484 (490)
.+|.|||.. ..||++|.|+++.|||+..-. ++.+..||. .|..++|+|.-. .|++.+.|+.+.
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~Lq 399 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQ 399 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEE
Confidence 999999975 788999999999999986422 223333443 489999999876 667789999999
Q ss_pred EEEe
Q 011224 485 VLDF 488 (490)
Q Consensus 485 v~~~ 488 (490)
||..
T Consensus 400 IW~~ 403 (422)
T KOG0264|consen 400 IWQM 403 (422)
T ss_pred Eeec
Confidence 9963
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=2.2e-24 Score=203.83 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=205.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q 011224 154 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNG 232 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~ 232 (490)
+.+++|++.|+.|++||+.++.. ...+.. ...+.+++|+|+++.+ ++++.++.|++|+...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-------------~~~~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-------------TRTFPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-------------EEEEEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 35788999999999999876531 111211 1235679999999876 5677889999999865
Q ss_pred c-eeEEecCCCCCEEEEEecCCCCEEEE-EeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC-ceEEEEcCC-CeEE
Q 011224 233 D-LKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTD-NMIY 308 (490)
Q Consensus 233 ~-~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d-~~i~ 308 (490)
. ....+..+.. +..++|+|+++.+++ ++.|+.+++||+.+...+..+... ..+..+.+.++ ..++++..+ ..+.
T Consensus 63 ~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 63 GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEE
Confidence 3 3344544443 467899999997765 456899999999987766655432 23455666543 445555544 4567
Q ss_pred EEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeeecccc-------ccEEEEEEcCCCC
Q 011224 309 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLREHS-------KEIYTIRWSPTGS 380 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~i~~v~~~p~g~ 380 (490)
.|+......+..+.. ...+.+++|+|++++|+ ++..++.|++||+.+++.+..+..+. .....++|+|++.
T Consensus 141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 778877665544332 23457899999999875 45569999999999987766554221 1234577888875
Q ss_pred CCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEEEEecC
Q 011224 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN 459 (490)
Q Consensus 381 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~ 459 (490)
.++++.+.++.|.+||+++++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++++..+...
T Consensus 220 --------~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 220 --------TAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred --------EEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 334445567789999999888776554 34578999999999999876 56899999999999999988877
Q ss_pred CCEEEEEECC
Q 011224 460 GGIFEVCWNK 469 (490)
Q Consensus 460 ~~v~~~~~~~ 469 (490)
..+++++++|
T Consensus 291 ~~~~~~~~~~ 300 (300)
T TIGR03866 291 RLPWGVVVRP 300 (300)
T ss_pred cccceeEeCC
Confidence 7789998876
No 120
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=221.07 Aligned_cols=303 Identities=22% Similarity=0.332 Sum_probs=232.5
Q ss_pred ccccccceeEEEECC------C-----CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEe--------------
Q 011224 138 LEGHTSEVCACAWSP------A-----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH-------------- 192 (490)
Q Consensus 138 l~~H~~~V~~~~~sp------~-----~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~-------------- 192 (490)
+--|...|..+.--| . ..-+.|+|.|++||+|++..+..+......++....++.
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 344666666554333 0 124789999999999999764332221111100000000
Q ss_pred ------eecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecC---CCCEEEEEeC
Q 011224 193 ------VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK---KGDYLLTGSC 262 (490)
Q Consensus 193 ------~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~ 262 (490)
.....-...-.+.+++.||+|++|++|..-|+++||++.. ...+.+..|...|.+|.|+. ..+.|++++.
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 0001112234699999999999999999999999999865 45567889999999999975 2367899999
Q ss_pred CCeEEEEEccC-cceeEeeeeeccCeEEEEccC---CceEEEEcCCCeEEEEEcCCCcceeEecCCC-----CCeeEEEE
Q 011224 263 DKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKW 333 (490)
Q Consensus 263 D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~v~~v~~ 333 (490)
|+.|.+||+.. -.+++++..|...+.++.|.. +...++++.|+.|++-..+.......|..|. ..+..++.
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 99999999854 457788999999999999853 3577889999887654333222223333332 35788999
Q ss_pred cCCCCEEEEEeCCCeEEEEecCCCceeeeecc---ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE
Q 011224 334 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 410 (490)
Q Consensus 334 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 410 (490)
.|+.+++++++.|..|+||++.+++.++.|++ |.+....+...|.|. |||+...|.++.++|..+|++
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi---------Y~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI---------YLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCcc---------EEEEeecCCceEEEEeccchh
Confidence 99999999999999999999999999998875 556778888889885 899999999999999999999
Q ss_pred EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 411 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 411 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
+.++.||...|+.+.|++|.+.|++.+.||.|.||.+..
T Consensus 676 vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 676 VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999999999999753
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.3e-28 Score=230.95 Aligned_cols=255 Identities=28% Similarity=0.516 Sum_probs=219.0
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011224 152 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN 231 (490)
Q Consensus 152 p~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~ 231 (490)
|.+.++.++..+..+++|+... ...|+..|.++..-..++.+++|+.|..+-+|...
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~-----------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~ 58 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE-----------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIG 58 (825)
T ss_pred Ccccccceeeeeeccccccchh-----------------------hhhhhhhhceeeeeccceeeccCCCceeecccccc
Confidence 3344555666666788888542 22346667777776778999999999999999865
Q ss_pred C-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEE
Q 011224 232 G-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 310 (490)
Q Consensus 232 ~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 310 (490)
. .....+.+|..+|-+|.|++....|++|+.+|+|++||+....
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk----------------------------------- 103 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK----------------------------------- 103 (825)
T ss_pred CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh-----------------------------------
Confidence 4 3345689999999999999999999999999999999997653
Q ss_pred EcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEE
Q 011224 311 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390 (490)
Q Consensus 311 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~ 390 (490)
.++++.||...+.+|+|+|-+.++|+|+.|..+++||++...+.+.+.+|...+..++|+|+|. +
T Consensus 104 ------~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr---------~ 168 (825)
T KOG0267|consen 104 ------IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR---------W 168 (825)
T ss_pred ------hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc---------e
Confidence 2346778888999999999999999999999999999999999999999999999999999997 8
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-CCCEEEEEECC
Q 011224 391 LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNK 469 (490)
Q Consensus 391 l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~ 469 (490)
+++|+.|.+++|||...|+.+.+++.|.+.|.++.|+|..-+|++||.|++|++||+++..++..... -.+|-+++|+|
T Consensus 169 v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 169 VASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred eeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999998887766544 34689999999
Q ss_pred CCCEEEEEEC
Q 011224 470 EGDKIAACFA 479 (490)
Q Consensus 470 ~g~~la~~~~ 479 (490)
+|+.+++|..
T Consensus 249 ~~~~~~~G~q 258 (825)
T KOG0267|consen 249 DGKIVLSGEQ 258 (825)
T ss_pred CceeeecCch
Confidence 9998887754
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=217.64 Aligned_cols=269 Identities=23% Similarity=0.386 Sum_probs=217.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc--eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
|...-+.++|.++|.+|++++.||.|++|+.... ...++..+...|++++. .+++|++|+.+++|.+|....++..
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCcc
Confidence 4456889999999999999999999999986543 22234447888888865 4459999999999999999888766
Q ss_pred EeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 278 QQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
..+..-.-|+.++.+.. ...++.+++|-.|.+.+.......+.+.+|.++|.++.|+|.+++||+.+-||.|+||++.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 55555566777777754 45678889999999999999999999999999999999999999999999999999999998
Q ss_pred Cceeeeeccc--------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC--CCCCEEEEEE
Q 011224 357 DKYVHDLREH--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAF 426 (490)
Q Consensus 357 ~~~~~~~~~~--------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~ 426 (490)
+.+..++..- ...+..++|+|++. -|+..+.|+.|++|+.......+.+.. +...+..++|
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---------~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w 240 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGG---------TLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW 240 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCC---------eEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence 8776655431 34567889999975 467778899999999999988887753 4445899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCc
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 482 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~ 482 (490)
||+|+|||+++.||.|.|||+.+-. .......|.+++|.|.++.+-.-...|+
T Consensus 241 sPnG~YiAAs~~~g~I~vWnv~t~~---~~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 241 SPNGKYIAASTLDGQILVWNVDTHE---RHEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred cCCCcEEeeeccCCcEEEEecccch---hccccceeEEEecCCCCCeeEEEeeccc
Confidence 9999999999999999999998722 2223456999999999875544443333
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.5e-25 Score=190.92 Aligned_cols=276 Identities=18% Similarity=0.280 Sum_probs=201.4
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCcee---E--EecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEc
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---C--TLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDV 271 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~---~--~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~ 271 (490)
.+|.+.|++++|++||++|++++.|+.|+||++..-.. . ...-.-+--+.+.|.|+..-+ +++-...++++|-+
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 35678999999999999999999999999999754111 0 000111234778999998755 45556668999976
Q ss_pred cCcc---eeE---------eeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC
Q 011224 272 KTEE---WKQ---------QFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 338 (490)
Q Consensus 272 ~~~~---~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 338 (490)
...+ ... .-..|..++..+...+ ...+++++.|..|.+|++. ++.+..+......-...+.||+|+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCc
Confidence 4321 111 1122344555555544 4556788999999999998 677777666666666788999999
Q ss_pred EEEEEeCCCeEEEEecC---CC-----ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-
Q 011224 339 LLASCSDDVTAKIWNMK---QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK- 409 (490)
Q Consensus 339 ~l~s~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~- 409 (490)
+|++++.---+++|..- .+ ..+..+++|...|..++|+++.. .+++.|.||++||||++...
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~---------r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST---------RAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc---------eeEEEecCCcEEEeeccceEe
Confidence 99999999999999852 22 33567889999999999999875 68999999999999976321
Q ss_pred ------EEEEe----eC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec--CCCEEEEEECCCCCEEEE
Q 011224 410 ------LLYSL----NG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAA 476 (490)
Q Consensus 410 ------~~~~~----~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~v~~~~~~~~g~~la~ 476 (490)
.+.+. .. ...++ .|..+|+|+.||.+. ...+++|..++|+....+.. .+.|.+++|+++|+++|+
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 11111 11 12334 899999999988654 55799999999988766643 456999999999999999
Q ss_pred EECCCcEEEE
Q 011224 477 CFANHTVCVL 486 (490)
Q Consensus 477 ~~~d~~v~v~ 486 (490)
|+. +.+.|+
T Consensus 391 cGd-r~vrv~ 399 (420)
T KOG2096|consen 391 CGD-RYVRVI 399 (420)
T ss_pred ecc-eeeeee
Confidence 985 456665
No 124
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=221.81 Aligned_cols=242 Identities=21% Similarity=0.372 Sum_probs=178.8
Q ss_pred Eec-CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc-------------CeEEEE-c-c-CCceEE
Q 011224 237 TLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-------------PTLDVD-W-R-NNVSFA 299 (490)
Q Consensus 237 ~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-------------~~~~~~-~-~-~~~~~~ 299 (490)
.+. .|.++|++++|+++|+||++|+.|+.|+||.+...+....-..... |+..-. - . .....-
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 345 8999999999999999999999999999998765332110000000 000000 0 0 000000
Q ss_pred EEcCCCeEEEEE---cCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 300 TSSTDNMIYVCK---IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 300 ~~~~d~~i~~~~---~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
.+.....+.+-. .-..+|+..|.||.+.|..+.|+. .++|+++|.|.+||||++....++..| .|..-|+||+|+
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence 011111111100 012467888999999999999996 468889999999999999999999877 488999999999
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
|... .|+++|+-||.||||++...+.+.-.. ...-|++++|+|||++.+.|+.+|.+++|+...-++...+
T Consensus 419 PvDD--------ryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 419 PVDD--------RYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred ccCC--------CcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 9654 489999999999999998777665444 3478999999999999999999999999999988776554
Q ss_pred ec---------CCCEEEEEECCCC-CEEEEEECCCcEEEEEee
Q 011224 457 TG---------NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 457 ~~---------~~~v~~~~~~~~g-~~la~~~~d~~v~v~~~~ 489 (490)
.- +..|+++.|.|.. +.|+..+.|..|+|||.|
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~ 532 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGR 532 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEecc
Confidence 21 2369999999854 468888889999999984
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=191.57 Aligned_cols=236 Identities=21% Similarity=0.384 Sum_probs=184.4
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCc--e-eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc
Q 011224 200 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD--L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 200 ~~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~--~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 275 (490)
....|.+|+||| ...+++.|+.||+||+|+++.. . ......|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 456799999999 5667779999999999997652 1 23456799999999999999999999999999999998874
Q ss_pred eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC--EEEEEeCCCeEEEEe
Q 011224 276 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWN 353 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~dg~i~iwd 353 (490)
. ..+..|.++|.++.|-+... .|+|||.|.+|++||
T Consensus 106 ~------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 106 V------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred e------------------------------------------eeeeecccceeEEEEecCCCcceeEecccccceeecc
Confidence 2 23456888888888877655 799999999999999
Q ss_pred cCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe--eCCCCCEEEEEECCCCC
Q 011224 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREPVYSLAFSPTGE 431 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~spdg~ 431 (490)
++...++.++.. ...+++...- +.+++.+..+..|.+|+++++...+.. ....-.+.+|+..+|..
T Consensus 144 ~R~~~pv~t~~L-PeRvYa~Dv~-----------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~ 211 (347)
T KOG0647|consen 144 TRSSNPVATLQL-PERVYAADVL-----------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD 211 (347)
T ss_pred cCCCCeeeeeec-cceeeehhcc-----------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC
Confidence 999888877654 3455554321 126778888999999999866433221 11234578999999988
Q ss_pred EEEEEeCCCcEEEEEcCCC--eEEEEEecCC----------CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 432 YLASGSLDKSMHIWSLKEG--KIVKTYTGNG----------GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~--~~~~~~~~~~----------~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
..|.||-.|.+.|..+..+ +.-.+|..|. .|++++|+|.-..|++++.||++.+||-.
T Consensus 212 ~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 212 GFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred ceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 8899999999999999876 2222332221 36789999999999999999999999853
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=7.9e-24 Score=200.01 Aligned_cols=264 Identities=14% Similarity=0.170 Sum_probs=198.2
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 214 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
.++++++.|+.+++|+... .....+..+.. +.+++|+|++..+ ++++.++.|++||+.+++....+..+.. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 5788999999999999864 44556655544 6789999999876 5677899999999998887766654433 33455
Q ss_pred ccCC--ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC-eEEEEecCCCceeeeeccccc
Q 011224 292 WRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSK 368 (490)
Q Consensus 292 ~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~ 368 (490)
+.++ ..++++..++.+++|++.....+..+.. ...+.+++|+|+|+++++++.++ .+.+||..++..+..+.. ..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 5433 3345566789999999988777666653 23468899999999999988875 467789888776554432 23
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-----C--CEEEEEECCCCCEEEE-EeCCC
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----E--PVYSLAFSPTGEYLAS-GSLDK 440 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~--~v~~l~~spdg~~l~s-~s~dg 440 (490)
....+.|+|++. .+++++..++.|++||+.+++.+..+..+. . ....++|+|++++++. .+.++
T Consensus 158 ~~~~~~~s~dg~--------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 158 RPRFAEFTADGK--------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred CccEEEECCCCC--------EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCC
Confidence 456789999875 344566679999999999988776654321 1 2356899999998654 45567
Q ss_pred cEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEE-ECCCcEEEEEee
Q 011224 441 SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 441 ~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~-~~d~~v~v~~~~ 489 (490)
.|.+||+.+++++........+.+++|+|+|++|+++ ..++.|.|||++
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred eEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 8999999999887766555678999999999999876 568999999986
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=200.37 Aligned_cols=281 Identities=14% Similarity=0.222 Sum_probs=222.8
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC-EEEEEe
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 220 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~sg~ 220 (490)
.++|+++.|||.-.+|++||.|++++||.+.. +.+... ... .-...+|.+.+|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDG-k~N~~l-----qS~---------~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG-KVNPKL-----QSI---------HLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecC-ccChhh-----eee---------eeccCccceeeecCCCceEEEecc
Confidence 46899999999999999999999999999853 222211 111 11246799999999999 899999
Q ss_pred CCCeEEEEECCCceeE---EecCCC-CCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc
Q 011224 221 YDGQARIWSTNGDLKC---TLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~---~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
.-...+.||+...... ...++. ..+.....+|++++|+..+..|.|.+-...+++++..+..
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-------------- 343 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-------------- 343 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee--------------
Confidence 9999999998754333 233343 3456677799999999999999999988888776544421
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccc-cEEEEEE
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EIYTIRW 375 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~v~~ 375 (490)
.+.|..++|+.+++.|+.++.+|.|.+||+++..+++.+....+ .-++++.
T Consensus 344 ----------------------------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~ 395 (514)
T KOG2055|consen 344 ----------------------------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCI 395 (514)
T ss_pred ----------------------------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeee
Confidence 35678899999999999999999999999999998888764332 2356677
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC------CeEEEEeeCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEc
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GKLLYSLNGHREPVYSLAFSPTGEYLASGSL--DKSMHIWSL 447 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~--dg~i~iw~~ 447 (490)
++++. +||+||..|.|.|||..+ .+++..+......|++|+|+||++.||.+|. ...+++-.+
T Consensus 396 S~ng~---------ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 396 SLNGS---------YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred cCCCc---------eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 78776 899999999999999653 4566777777788999999999999988774 678888888
Q ss_pred CCCeEEEEEec----CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 448 KEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 448 ~~~~~~~~~~~----~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
..-.+...|+. -+.|.+++|+|.|-+||.|-..|.|.+|-+
T Consensus 467 PS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 467 PSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 77666555543 245899999999999999999999999976
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-24 Score=207.66 Aligned_cols=319 Identities=18% Similarity=0.317 Sum_probs=240.7
Q ss_pred cceeEEEECCC--CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 143 SEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 143 ~~V~~~~~sp~--~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
+.|+++ +||. -+.++.|+.+|.+.||++.+++. +..+.+ ....|+++.=+|--..++.|.
T Consensus 160 ~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~-------------v~~f~~----~~s~IT~ieqsPaLDVVaiG~ 221 (910)
T KOG1539|consen 160 DFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKV-------------VYTFQE----FFSRITAIEQSPALDVVAIGL 221 (910)
T ss_pred CceeeE-ecchhheeeEEEeecCCcEEEEEeccCcE-------------EEEecc----cccceeEeccCCcceEEEEec
Confidence 338887 5776 36788999999999999988752 122222 236699999899888999999
Q ss_pred CCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCE-EEEEeCCCeEEEEEccCcceeEeee-eeccCeEEEEccC-Cc
Q 011224 221 YDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWRN-NV 296 (490)
Q Consensus 221 ~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 296 (490)
.+|+|.|+++.. +...+|..-.+.|++++|..||+. +++|+..|.+.+||++....+.... .|.+.+....+.+ ..
T Consensus 222 ~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep 301 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP 301 (910)
T ss_pred cCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc
Confidence 999999999875 445566544699999999999976 5667777999999999988877665 6766676666654 45
Q ss_pred eEEEEcCCCeEEEEEcC--CC--cceeEecCCCCCeeEEEEc-CCCCEEEEEeCCCeEEEEecCCCce------------
Q 011224 297 SFATSSTDNMIYVCKIG--EN--RPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKY------------ 359 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~--~~--~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~dg~i~iwd~~~~~~------------ 359 (490)
.+++++.|+.+++|-.+ .+ +.++.-.||..+..|+.|. .+|.++.+++.|++++.+++.....
T Consensus 302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~ 381 (910)
T KOG1539|consen 302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR 381 (910)
T ss_pred eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence 66788889988777554 33 3455556899999999997 6788899999999988887532100
Q ss_pred ---e-------------eee--------------cccc-----------------------------ccEEEEEEcCCCC
Q 011224 360 ---V-------------HDL--------------REHS-----------------------------KEIYTIRWSPTGS 380 (490)
Q Consensus 360 ---~-------------~~~--------------~~~~-----------------------------~~i~~v~~~p~g~ 380 (490)
+ ..+ ..|. ..+++++.++.|.
T Consensus 382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN 461 (910)
T KOG1539|consen 382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN 461 (910)
T ss_pred cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc
Confidence 0 000 0011 1223333333332
Q ss_pred CCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe---eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE-
Q 011224 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY- 456 (490)
Q Consensus 381 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~- 456 (490)
+.+.|+..|+|-+|++.+|-...++ ..|..+|++|+...-++.+++++.+|.+++|+..+..++..+
T Consensus 462 ---------F~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 462 ---------FVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred ---------eEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 5677889999999999999988888 589999999999988999999999999999998876533322
Q ss_pred ----------------------------------------ecC-CCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 457 ----------------------------------------TGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 457 ----------------------------------------~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.++ ..|++++|||||++|++++.|++|++||+
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 112 24789999999999999999999999997
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.2e-27 Score=205.20 Aligned_cols=242 Identities=17% Similarity=0.341 Sum_probs=206.1
Q ss_pred eeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEc
Q 011224 234 LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 312 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 312 (490)
.+..+.+|...|.+++=+|.. ..++||+.||.|+|||+....+..++..|.+.|..+.+.. ..++++++|++|..|.+
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence 345678999999999999987 6799999999999999999999999999999999998877 77899999999999998
Q ss_pred CCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEE
Q 011224 313 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 313 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
... ++.++.+ .+.+..++-+..+..++|||.+ |.|||.....++..+.-....|.++.|+|... .+|+
T Consensus 137 ~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------sILa 204 (433)
T KOG0268|consen 137 DGP-PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------SILA 204 (433)
T ss_pred cCC-cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc--------hhee
Confidence 764 6666654 3456677777778889999874 99999999999999888888899999998764 3899
Q ss_pred EEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEEEEecCC-CEEEEEECCC
Q 011224 393 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTYTGNG-GIFEVCWNKE 470 (490)
Q Consensus 393 sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~-~v~~~~~~~~ 470 (490)
+|..|+.|.|||++.+.++..+.- ...-+.|+|+|.+-.+++|+.|..++.||.+.-. .+..+.++. .|++++|||-
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfspt 283 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPT 283 (433)
T ss_pred eeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCC
Confidence 999999999999999988876542 2335789999988888999999999999988643 355665554 5999999999
Q ss_pred CCEEEEEECCCcEEEEEee
Q 011224 471 GDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 471 g~~la~~~~d~~v~v~~~~ 489 (490)
|+.+++|+.|++|++|.++
T Consensus 284 G~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred cchhccccccceEEEeecC
Confidence 9999999999999999875
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.4e-25 Score=214.91 Aligned_cols=241 Identities=22% Similarity=0.367 Sum_probs=205.7
Q ss_pred cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc-ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcc
Q 011224 239 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 317 (490)
Q Consensus 239 ~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 317 (490)
..|+..-+.|+|.|+|..|++|+.||.|++|+...- +.-.++..+...+.++....+ .|++++.+++|.++.+..+..
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEeeccceEEEeeCCCCCc
Confidence 468888999999999999999999999999986554 323333335556666655444 899999999999999988776
Q ss_pred eeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC
Q 011224 318 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397 (490)
Q Consensus 318 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d 397 (490)
-..+...+-++++++++-+|+++|.||.|-.|++-++........+++|..+|.++.|+|.+. +||+.+.|
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~---------fLAvss~d 159 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGN---------FLAVSSCD 159 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCC---------EEEEEecC
Confidence 555666677899999999999999999999999999999988999999999999999999986 89999999
Q ss_pred CcEEEEeCCCCeEEEEeeCC--------CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC---CCEEEEE
Q 011224 398 STVKLWDVELGKLLYSLNGH--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVC 466 (490)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~h--------~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~---~~v~~~~ 466 (490)
|.|++|++.++.+..++.+- ...++.++|+|+|..|+..+.|+.|++|+..++.....+..+ ..+..++
T Consensus 160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE
Confidence 99999999998877766532 345788999999888888888999999999999887777542 3488999
Q ss_pred ECCCCCEEEEEECCCcEEEEEee
Q 011224 467 WNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 467 ~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|+|.|++||+++.||.|.|||+.
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecc
Confidence 99999999999999999999986
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.8e-26 Score=218.16 Aligned_cols=237 Identities=24% Similarity=0.423 Sum_probs=189.3
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee--c-----cCeEEEEcc--CCceEEEEcCCCeEEEEEcCC-
Q 011224 245 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--S-----GPTLDVDWR--NNVSFATSSTDNMIYVCKIGE- 314 (490)
Q Consensus 245 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~-----~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~- 314 (490)
...|..+++-+.++.++. ..+++|-+............ . ....++.|. ....+++++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 345556677777777764 46777766543322111111 1 112344554 345789999999999999987
Q ss_pred --CcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 315 --NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 315 --~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
++.+..|..|...+++++|++.. .+|++||.||+|++||++..+...+++.....|..|+|+|... ..+
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~--------~~F 192 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG--------NKF 192 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC--------ceE
Confidence 66778899999999999999876 5689999999999999999999999999899999999999753 479
Q ss_pred EEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--EEEEEecCCCEEEEEEC
Q 011224 392 ASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWN 468 (490)
Q Consensus 392 ~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~--~~~~~~~~~~v~~~~~~ 468 (490)
+++...|.+++||++.. ++...+.+|.++|.++.|+|++.||||||.|+.|+||+..+.+ .+.++..-..|..+.|.
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR 272 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR 272 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeec
Confidence 99999999999999864 4567789999999999999999999999999999999998654 45666666789999999
Q ss_pred CCCC-EEEEEEC--CCcEEEEEeeC
Q 011224 469 KEGD-KIAACFA--NHTVCVLDFRM 490 (490)
Q Consensus 469 ~~g~-~la~~~~--d~~v~v~~~~~ 490 (490)
|+-. +||+|+. |..|+|||+|.
T Consensus 273 P~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 273 PARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred cCccchhhhhhccccceEEEEeecc
Confidence 9864 7887744 78999999984
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-24 Score=196.65 Aligned_cols=249 Identities=16% Similarity=0.290 Sum_probs=207.7
Q ss_pred CEEEEEeCC-CeEEEEECCCceeE-EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 214 TLLATGSYD-GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 214 ~~l~sg~~d-g~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
.|++++... ..+.+|........ ...--.++|.+++-+|.|.+|+.|+-.|.+.+|.+.+|.+...+..|-.++.++.
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 567766554 47889987653221 2233468899999999999999998999999999999999999999999999999
Q ss_pred cc-CCceEEEEcCCCeEEEEEcC---------CCcceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEEecCCCce
Q 011224 292 WR-NNVSFATSSTDNMIYVCKIG---------ENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 292 ~~-~~~~~~~~~~d~~i~~~~~~---------~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
|. ++..|++++.||.|++|.+. ..+|+..|..|.-+|+.+.+.+- ...|+|+|.|.++++||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 96 45678999999999999863 34688899999999999988765 36799999999999999999988
Q ss_pred eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC----------------eEEEEeeCCCC--CE
Q 011224 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG----------------KLLYSLNGHRE--PV 421 (490)
Q Consensus 360 ~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~----------------~~~~~~~~h~~--~v 421 (490)
+.++. .+..+.+++.+|... .+..|+.+|.|.+.++... ..+..+.||.+ +|
T Consensus 211 Llti~-fp~si~av~lDpae~---------~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 211 LLTIT-FPSSIKAVALDPAER---------VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred eEEEe-cCCcceeEEEccccc---------EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 87764 356789999999875 6788999999999876432 23456788988 99
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe-cCCCEEEEEECCCCC
Q 011224 422 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGD 472 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~~g~ 472 (490)
+||+.+-||.+|++|+.||.|.|||+...++++++. -.+.|+.+.++|--.
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 999999999999999999999999999999888887 567899999877543
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.7e-24 Score=184.91 Aligned_cols=272 Identities=21% Similarity=0.342 Sum_probs=210.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
-.|+.|++-|.+|++|..||.|.|||.... ....+.+|..+|++++|+++|+.|+|+|.|..|++||+..+.+.+.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 689999999999999999999999997653 4457889999999999999999999999999999999999998887776
Q ss_pred eccCeEEEEccC--CceEEEEcCCCeEEEEEcCCCcceeEecC-----CC-CCeeEEEEcCCCCEEEEEeCCCeEEEEec
Q 011224 283 HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG-----HQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNM 354 (490)
Q Consensus 283 ~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-----h~-~~v~~v~~~~~~~~l~s~~~dg~i~iwd~ 354 (490)
. .|+....|++ ...++++-.+..-.+.++..++ ..+-. .. ....+..|.+.|+++++|...|.+.+++.
T Consensus 106 ~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 106 D-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred c-CccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 3 4666666643 3445555444444444544322 11111 11 12234568999999999999999999999
Q ss_pred CCCceeeeecccc-ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-------eE--EEEeeC--CCCCEE
Q 011224 355 KQDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-------KL--LYSLNG--HREPVY 422 (490)
Q Consensus 355 ~~~~~~~~~~~~~-~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-------~~--~~~~~~--h~~~v~ 422 (490)
.+-+++..++... ..|..+.++..|. .|+.-+.|..||.|+++.- .+ .+.+.. .+..-.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~---------~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk 253 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGR---------FLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK 253 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCc---------EEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh
Confidence 9999999888766 7888999988886 7888899999999987621 11 011100 123456
Q ss_pred EEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEEEEecCC--CEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 423 SLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 423 ~l~~spdg~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~--~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
+++||.+|.|++.|+. -..++||....|.+++.+.|.. ...++.|+|--..+++- ..|+|.+|..
T Consensus 254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 7899999999987764 4579999999999999998754 37899999998887776 6789999975
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.7e-22 Score=191.97 Aligned_cols=224 Identities=18% Similarity=0.268 Sum_probs=174.5
Q ss_pred eeccccc-cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 136 TILEGHT-SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 136 ~~l~~H~-~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
.++.||. ..|.+++|+ ++..|+|.+.+|+|.-||+.+.... + ......++|++++.+|.+.
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~-------------~----~~d~~gg~IWsiai~p~~~ 123 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK-------------Y----NIDSNGGAIWSIAINPENT 123 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee-------------E----EecCCCcceeEEEeCCccc
Confidence 4555664 679999999 6667889999999999999876421 1 1223457899999999999
Q ss_pred EEEEEeCCCeEEEEECCCcee---EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee-----ec-c
Q 011224 215 LLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-----HS-G 285 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----~~-~ 285 (490)
.++.|+.||.+..++...+.. ..+...++.|.+|+|+|++..+++|+.||.|++||+..+........ .. .
T Consensus 124 ~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~ 203 (691)
T KOG2048|consen 124 ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKRE 203 (691)
T ss_pred eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCC
Confidence 999999999888888766543 24566789999999999999999999999999999988875552221 11 1
Q ss_pred --CeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce--e-
Q 011224 286 --PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--V- 360 (490)
Q Consensus 286 --~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~- 360 (490)
-+.++.+..+..++++..-|+|.+||...+..++.+..|.+.|.|++..+++..+++++.|+.|..|...+.+. +
T Consensus 204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 23455566777899999999999999999999999999999999999999999999999999999888766532 1
Q ss_pred -eeeccccccEEEEEEcC
Q 011224 361 -HDLREHSKEIYTIRWSP 377 (490)
Q Consensus 361 -~~~~~~~~~i~~v~~~p 377 (490)
.....|...+.+++..+
T Consensus 284 ~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 284 NSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred eccccCCcccceeeeeec
Confidence 12234555565555443
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.8e-23 Score=179.77 Aligned_cols=276 Identities=22% Similarity=0.369 Sum_probs=207.3
Q ss_pred CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCc-----------eeEE-----ecCCCCCEEEEEecCCC-CEEEEEe
Q 011224 200 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD-----------LKCT-----LSKHKGPIFSLKWNKKG-DYLLTGS 261 (490)
Q Consensus 200 ~~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~-----------~~~~-----~~~h~~~V~~l~~~~~~-~~l~s~s 261 (490)
|.+.|.++...+ .|+|+++|+.||.|.+||++.. .++. -.+|+-+|.++.|-|-. ..|.++|
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 456788888776 6899999999999999997531 1121 23588899999999955 4677888
Q ss_pred CCCeEEEEEccCcceeEeeeeeccCeEEEEcc----CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC
Q 011224 262 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR----NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 337 (490)
Q Consensus 262 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 337 (490)
-|.++++||..+-+..-.|... +.+..-.+. ....++++..+-.|++||+..+..-.++.||.+.|.+|.|+|..
T Consensus 122 FDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 122 FDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred ccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 9999999999887665554432 222222222 24567788889999999999999999999999999999999988
Q ss_pred CE-EEEEeCCCeEEEEecCCC-ceeeee--------------ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEE
Q 011224 338 SL-LASCSDDVTAKIWNMKQD-KYVHDL--------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 401 (490)
Q Consensus 338 ~~-l~s~~~dg~i~iwd~~~~-~~~~~~--------------~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 401 (490)
.+ |+||+.||.|++||++.- .+...+ .+|.+.+..++|..++. ++++++.|..++
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---------~l~~~gtd~r~r 271 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---------YLASCGTDDRIR 271 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---------hhhhccCccceE
Confidence 76 689999999999999753 222222 24667889999999986 789999999999
Q ss_pred EEeCCCCeEEEEe---eCCCC----CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCE
Q 011224 402 LWDVELGKLLYSL---NGHRE----PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDK 473 (490)
Q Consensus 402 iwd~~~~~~~~~~---~~h~~----~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~ 473 (490)
+|+..+|+....- ..|.. .+. +. +-+...++---.++.+.++++-.|..+..+..+. .+.+.++.|+=..
T Consensus 272 ~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~ 349 (397)
T KOG4283|consen 272 VWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQ 349 (397)
T ss_pred EeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhh
Confidence 9999887643211 01111 112 33 3344445555566889999999998888887765 3888889999999
Q ss_pred EEEEECCCcEEEEE
Q 011224 474 IAACFANHTVCVLD 487 (490)
Q Consensus 474 la~~~~d~~v~v~~ 487 (490)
..++..|+.|..|-
T Consensus 350 ~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 350 CFTGDMNGNIYMWS 363 (397)
T ss_pred hhccccCCcccccc
Confidence 99999999987773
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5e-26 Score=216.98 Aligned_cols=239 Identities=25% Similarity=0.486 Sum_probs=207.5
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...+..|...|.++..-..++.+++|+.|..+-+|.+...-. .. .+.+|..+|.++.|+++..
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~----------i~-------S~~~hespIeSl~f~~~E~ 83 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA----------IT-------SLTGHESPIESLTFDTSER 83 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCch----------hh-------eeeccCCcceeeecCcchh
Confidence 345567999999998877789999999999999998643211 11 1345788999999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+|+.|+.+|+|++||++. ....++.+|...+.+|.|+|-+.++++|+.|+-+++||.+...
T Consensus 84 LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G------------------ 145 (825)
T KOG0267|consen 84 LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG------------------ 145 (825)
T ss_pred hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC------------------
Confidence 999999999999999864 5567899999999999999999999999999999999987543
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
+...|.+|...|.++.|+|+|+++++|++|.+++|||...+++..+|..|...+..+
T Consensus 146 -----------------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sl 202 (825)
T KOG0267|consen 146 -----------------------CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSL 202 (825)
T ss_pred -----------------------ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccccccc
Confidence 344567788899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
.|+|... ++++||.|++|++||+++...+-........|.+++|+|++..+++|-...
T Consensus 203 e~hp~e~---------Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 203 EFHPLEV---------LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCchhh---------hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 9988764 899999999999999999888888887788999999999999888876553
No 137
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=4e-24 Score=201.03 Aligned_cols=153 Identities=27% Similarity=0.532 Sum_probs=123.3
Q ss_pred eeEEEEcC-CCCEEEEEeCCCeEEEEecCCCc-------eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc
Q 011224 328 VNCVKWDP-TGSLLASCSDDVTAKIWNMKQDK-------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 399 (490)
Q Consensus 328 v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~ 399 (490)
|+.+.|.| |...||.+++||.|+||.+..+. +-..+..|...|+++.|+|-.. .+|++++.|-+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa--------dvLa~asyd~T 701 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA--------DVLAVASYDST 701 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh--------hHhhhhhccce
Confidence 55677777 45679999999999999986543 3455778999999999999754 27999999999
Q ss_pred EEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC----EEEEEECCCCCEEE
Q 011224 400 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFEVCWNKEGDKIA 475 (490)
Q Consensus 400 i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~----v~~~~~~~~g~~la 475 (490)
|++||+++++....+.+|.+.|.+++|||+|+.+|+.+.||+|++|+.+.+.. ..+.+++. --.+.|--||.+++
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVI 780 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEE
Confidence 99999999999999999999999999999999999999999999999887653 12233332 34678999999777
Q ss_pred EEECCC----cEEEEEee
Q 011224 476 ACFANH----TVCVLDFR 489 (490)
Q Consensus 476 ~~~~d~----~v~v~~~~ 489 (490)
..+.|. .|.+||++
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred Eecccccchhhhhhhhhh
Confidence 665553 56666653
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=6e-24 Score=188.48 Aligned_cols=259 Identities=26% Similarity=0.504 Sum_probs=192.9
Q ss_pred eccccccceeEEEECCCC--CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 137 ILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~--~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...+|.+.|+.++-++-+ .+.++=+..|.|+||++.... .++ +..+
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l-----------------------------~~l--~~~~- 193 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL-----------------------------NAL--SEPG- 193 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhh-----------------------------hhh--cCcc-
Confidence 345788999988888865 567777889999999975321 000 0000
Q ss_pred EEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+. +-+.....+.++.+|.+.=++|+|+|-- ..|+||..-+.|++|.+.++.|..
T Consensus 194 ~~----------~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v--------------- 248 (440)
T KOG0302|consen 194 LE----------VKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV--------------- 248 (440)
T ss_pred cc----------ccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceee---------------
Confidence 00 1113345667888999999999999943 348888888999999887776431
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCC---ceeeeecccccc
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQD---KYVHDLREHSKE 369 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 369 (490)
. ...|.+|+..|..++|||.. ..|+|||-||+|+|||++.+ .++. .++|.+.
T Consensus 249 -------------------d----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sD 304 (440)
T KOG0302|consen 249 -------------------D----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSD 304 (440)
T ss_pred -------------------c----CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCc
Confidence 1 12466799999999999976 57899999999999999987 3333 3789999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC---CeEEEEeeCCCCCEEEEEECCC-CCEEEEEeCCCcEEEE
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---GKLLYSLNGHREPVYSLAFSPT-GEYLASGSLDKSMHIW 445 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iw 445 (490)
|..|.|+..-. +||+|+.||+++|||++. ++++..++-|..+|++|.|+|. ...|+++|.|.+|.||
T Consensus 305 VNVISWnr~~~---------lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 305 VNVISWNRREP---------LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred eeeEEccCCcc---------eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 99999987653 899999999999999984 5678899999999999999996 4678888999999999
Q ss_pred EcCCCe-------------------EEEEEecCCCEEEEEECCCCC-EEEEEECCCcEEEE
Q 011224 446 SLKEGK-------------------IVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVL 486 (490)
Q Consensus 446 ~~~~~~-------------------~~~~~~~~~~v~~~~~~~~g~-~la~~~~d~~v~v~ 486 (490)
|+.-.. ++....+...+-.+.|++.-. +|++.+.|| ++||
T Consensus 376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 985211 222223333467899999754 666777776 4444
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-22 Score=193.12 Aligned_cols=278 Identities=21% Similarity=0.370 Sum_probs=216.4
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
..+|.|+|||.+.+.||.+-.||.|-||++..+ .+....+.+ +....|-.++|+ ++..|+|.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~------------w~~~~vi~g---~~drsIE~L~W~-e~~RLFS~g~ 88 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN------------WFLEPVIHG---PEDRSIESLAWA-EGGRLFSSGL 88 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC------------ceeeEEEec---CCCCceeeEEEc-cCCeEEeecC
Confidence 568999999999999999999999999998653 122222323 446789999999 5566788899
Q ss_pred CCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEE
Q 011224 222 DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 300 (490)
Q Consensus 222 dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
+|.|.-||+. ......+....++||+++.+|.+..++.|+.||.+...+...+.....
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~--------------------- 147 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK--------------------- 147 (691)
T ss_pred CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE---------------------
Confidence 9999999975 456667777889999999999999999999999777666554432110
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee-----cc---ccccEEE
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-----RE---HSKEIYT 372 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~---~~~~i~~ 372 (490)
..|.-.++.|.+++|+|++..|++|+.||.|++||..++..++.. +. ...-|++
T Consensus 148 ------------------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 148 ------------------RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWS 209 (691)
T ss_pred ------------------eecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEE
Confidence 122233578999999999999999999999999999988766521 11 2223566
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
+.|-.++ .|++|..-|+|++||...+.++..+..|...|.+|+-++++.+++++|.|+.|.-|...+.+.
T Consensus 210 v~~Lrd~----------tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 210 VLFLRDS----------TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEeecC----------cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 7666555 589999999999999999999999999999999999999999999999999999998876643
Q ss_pred EEEE----ecC-CCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 453 VKTY----TGN-GGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 453 ~~~~----~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
.... ..+ ..|-+++..+. .|.+|+.|.++.+-
T Consensus 280 ~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 280 EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAIC 316 (691)
T ss_pred ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEc
Confidence 1111 122 24677776665 78888888877664
No 140
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=3.8e-23 Score=178.81 Aligned_cols=243 Identities=23% Similarity=0.400 Sum_probs=189.1
Q ss_pred ecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC--cc--eeEeeeeeccCeEEEEccC---CceEEEEcCCCeEEEE
Q 011224 238 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EE--WKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVC 310 (490)
Q Consensus 238 ~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~ 310 (490)
-.+|.+-|.++.|.+.|.++++|+.|++++|||.+. +. +...+..|.+.+..+.|.. ...+++++.|+++.+|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357889999999999999999999999999999643 33 4557889999999999953 4678899999999999
Q ss_pred EcCCC---------cceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEEecC------CCceeeeec-------cc
Q 011224 311 KIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMK------QDKYVHDLR-------EH 366 (490)
Q Consensus 311 ~~~~~---------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~iwd~~------~~~~~~~~~-------~~ 366 (490)
.-... ....++....+.|+.|.|.|. |-.+|+++.||.+|||+.- ...+.++++ .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 86321 123455566788999999985 5679999999999999753 333444444 45
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----CcEEEEeCCCC----eEEEEeeCCCCCEEEEEECCCC----CEE
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELG----KLLYSLNGHREPVYSLAFSPTG----EYL 433 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spdg----~~l 433 (490)
..+..|+.|+|.-. +..+||.|+.+ +.++||....+ ..+.++.+|..+|++|+|.|+- .+|
T Consensus 169 ~~~~~CvsWn~sr~------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRM------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred cCcceEEeeccccc------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 66789999986532 23478888766 47889875433 3456788999999999999973 579
Q ss_pred EEEeCCCcEEEEEcCCC--------------------eEEEEEec-CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 434 ASGSLDKSMHIWSLKEG--------------------KIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 434 ~s~s~dg~i~iw~~~~~--------------------~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
|+|+.|| |+||+++.. +++..+.. ++.|+.++|+--|..|++.+.||+|++|-
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 9999999 999998731 12333433 45799999999999999999999999994
No 141
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.2e-23 Score=188.83 Aligned_cols=263 Identities=20% Similarity=0.340 Sum_probs=204.7
Q ss_pred EEeCC-CeEEEEECCCc-eeEEecCC-CCCEEEEEecCCCCEEEEEeC-CCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 218 TGSYD-GQARIWSTNGD-LKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 218 sg~~d-g~i~iw~~~~~-~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+++.| .++.+||+... ...++.+. ...-.++..- .+.|++++.. -..+.+|.+........+..-.+++.++...
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 33444 45889997643 23344332 1111111111 2256666554 4578899987766555555667788999888
Q ss_pred CCceEEEEc-CCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC---------CCceeeee
Q 011224 294 NNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------QDKYVHDL 363 (490)
Q Consensus 294 ~~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~ 363 (490)
+...|+.++ -.+.+|+|.+.++..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|.+. +-++++.+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 877777666 89999999999999999999999999999999999999999999999999862 34667888
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
..|.-+|+.+...+.|.. ..|+|+|.|.++++||+..+.++.++. ...++.+++.+|-++.+..|+.+|.|.
T Consensus 171 ~~HtlsITDl~ig~Gg~~-------~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTN-------ARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred ccCcceeEEEEecCCCcc-------ceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEE
Confidence 899999999988776532 378999999999999999999988876 557899999999999999999999999
Q ss_pred EEEcCCCe----------------EEEEEecC---CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 444 IWSLKEGK----------------IVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 444 iw~~~~~~----------------~~~~~~~~---~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.++.+.. .+..+.++ ..|++++.+.||..|++|+.||.|+|||+.
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 98875422 22333443 269999999999999999999999999975
No 142
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.3e-24 Score=200.64 Aligned_cols=268 Identities=22% Similarity=0.338 Sum_probs=199.0
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
+...+++.|.+.|++++|+|....|++|+.||+|++|.++... ......+..+..+++ |.++|.|++++++
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----~s~~~~~epi~tfra----H~gPVl~v~v~~n 355 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----KSAEKDVEPILTFRA----HEGPVLCVVVPSN 355 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----CccccceeeeEEEec----ccCceEEEEecCC
Confidence 3345899999999999999999999999999999999995421 111223344444544 5789999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-----------ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 213 GTLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
+..+++|+.||+|+.|++.. .....+.||++.|+.+++|+...+|++|+.||++++|+...... .+|.
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~ 434 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFG 434 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccC
Confidence 99999999999999996431 12346889999999999999999999999999999999866554 2222
Q ss_pred e--eccCeEEEEccCCc--eEEEEcCCCeEEEEEcCCCcceeEecCC-------CCCeeEEEEcCCCCEEEEEeCCCeEE
Q 011224 282 F--HSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSDDVTAK 350 (490)
Q Consensus 282 ~--~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~dg~i~ 350 (490)
. ..+..+.+++.... ..+++..-+.--+.+......++.+... ...++-+.++|.+.+.+++..|+.|+
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 1 11223334432211 1111111111112222222223333211 13477899999999999999999999
Q ss_pred EEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC
Q 011224 351 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 419 (490)
Q Consensus 351 iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 419 (490)
++|..++++++....|...++++++.|+|. +|++|+.||.+++|.+....++.....|..
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~---------~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGP---------YLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cccccccccchheeeccceecceeecCCCc---------eEEeecCCceeehhhccchheeeccccccc
Confidence 999999999999999999999999999986 899999999999999988888877776653
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=7e-24 Score=194.12 Aligned_cols=267 Identities=19% Similarity=0.312 Sum_probs=205.9
Q ss_pred EECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCce--eE
Q 011224 160 GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDL--KC 236 (490)
Q Consensus 160 gs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~--~~ 236 (490)
+|.-..++|||+....... .+..+.. ...+.+++|+.... .+++.+.|..+++|...+.. +.
T Consensus 8 aS~gd~~kl~D~s~~~~~~-------------~~~~~t~--~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKS-------------EYVHQTA--EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred eccCCceEEeecccccCcc-------------ccccCCC--CCcceeeeccccceEEEeecCCceeEEEecccCCCCccc
Confidence 4444579999987543211 0111111 22389999998763 34455678899999877651 11
Q ss_pred Eec-CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCC
Q 011224 237 TLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 315 (490)
Q Consensus 237 ~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 315 (490)
.+. .....-+|++......|+++|+..++|+|||++...+
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~--------------------------------------- 113 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI--------------------------------------- 113 (673)
T ss_pred eeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH---------------------------------------
Confidence 111 1122345565556668999999999999999974322
Q ss_pred cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc-cccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
.+.+.+|+..|+++.++....+||+++..|-|.|..+.++....+|... ...+.-+.|+|... .+|.++
T Consensus 114 --hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr--------~lL~~a 183 (673)
T KOG4378|consen 114 --HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKR--------FLLSIA 183 (673)
T ss_pred --hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccc--------eeeEee
Confidence 2346789999999999999999999999999999999988777777654 34556788988765 488999
Q ss_pred ECCCcEEEEeCCCCeEEEE-eeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCC
Q 011224 395 SFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 472 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~ 472 (490)
+.+|.|.+||+....+.+. ...|..|...|+|+|.. .+||+.|.|+.|.+||....+....+.-..+...++|.++|.
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGT 263 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCce
Confidence 9999999999987777665 46799999999999976 577899999999999999888888887778899999999999
Q ss_pred EEEEEECCCcEEEEEeeC
Q 011224 473 KIAACFANHTVCVLDFRM 490 (490)
Q Consensus 473 ~la~~~~d~~v~v~~~~~ 490 (490)
+|++|..+|.|..||+|+
T Consensus 264 ~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRS 281 (673)
T ss_pred EEEeecCCceEEEEeccc
Confidence 999999999999999996
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.3e-23 Score=187.62 Aligned_cols=237 Identities=24% Similarity=0.376 Sum_probs=179.7
Q ss_pred eEEEEEcC-------CCCEEEEEeCCCeEEEEECCCc----ee------------------EEecCCCCCEEEEEecCCC
Q 011224 204 VTTLDWNG-------EGTLLATGSYDGQARIWSTNGD----LK------------------CTLSKHKGPIFSLKWNKKG 254 (490)
Q Consensus 204 V~~~~~s~-------~~~~l~sg~~dg~i~iw~~~~~----~~------------------~~~~~h~~~V~~l~~~~~~ 254 (490)
-.|++|.. -|+|+|.|..|..|.|||+.-. +. ..-.+|+.+|..|.|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 45666642 4789999999999999996410 00 0123689999999988754
Q ss_pred -CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEE
Q 011224 255 -DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 333 (490)
Q Consensus 255 -~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 333 (490)
+.|+|||.|.+|++||+.++++.. ++..|.+.|.++.|
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~-----------------------------------------s~~~~~k~Vq~l~w 294 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKS-----------------------------------------SITHHGKKVQTLEW 294 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcce-----------------------------------------ehhhcCCceeEEEe
Confidence 578899999999999998876543 44457788999999
Q ss_pred cCCC-CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEE
Q 011224 334 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLL 411 (490)
Q Consensus 334 ~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~ 411 (490)
+|.. .+|++|+.|+++.+.|.+........-...+.|-.++|.|... +.++++..||+|+-+|+|+. +++
T Consensus 295 h~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se--------~~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 295 HPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE--------NSFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred cCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc--------eeEEEecCCceEEeeecCCCCCce
Confidence 9865 6789999999999999984322221112356788899988754 46788899999999999965 899
Q ss_pred EEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCC--eEEEEEec-CCCEEEEEECCCCC-EEEEEECCCcEEEE
Q 011224 412 YSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG--KIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVCVL 486 (490)
Q Consensus 412 ~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~--~~~~~~~~-~~~v~~~~~~~~g~-~la~~~~d~~v~v~ 486 (490)
+++++|.++|.+|++++.- .+|+|+|.|+.|++|++..- +.++...- .+...++++.|+-- .||.|+..+.++||
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 9999999999999999865 57889999999999998643 33332221 23355667777653 78888888899999
Q ss_pred Eee
Q 011224 487 DFR 489 (490)
Q Consensus 487 ~~~ 489 (490)
|+.
T Consensus 447 d~~ 449 (463)
T KOG0270|consen 447 DIF 449 (463)
T ss_pred ecc
Confidence 963
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=2e-20 Score=184.88 Aligned_cols=327 Identities=34% Similarity=0.636 Sum_probs=254.9
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE-cCCCC-
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGT- 214 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-s~~~~- 214 (490)
.+.+|...|.++.|++.+..++.++.|+.+.+|+...+.. ....+.... ...+..+.+ ++++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~~~---~~~~~~~~~~~~~~~~ 124 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------LIKSLEGLH---DSSVSKLALSSPDGNS 124 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------eEEEEeccC---CCceeeEEEECCCcce
Confidence 5668999999999999999999999999999999875430 111111110 134666666 78777
Q ss_pred EEEEEeC-CCeEEEEECCC--ceeEEecCCCCCEEEEEecCCCCEEEEEeC-CCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 215 LLATGSY-DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 215 ~l~sg~~-dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
+++..+. |+.+++|+... .....+..|...|..++|+|++.++++++. |+.+++|++........+..|...+..+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 204 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEE
Confidence 5555444 99999999885 667788999999999999999999888886 9999999999888888888888999999
Q ss_pred EccCCce-EE-EEcCCCeEEEEEcCCCccee-EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce-eeeeccc
Q 011224 291 DWRNNVS-FA-TSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH 366 (490)
Q Consensus 291 ~~~~~~~-~~-~~~~d~~i~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~ 366 (490)
.|.+... ++ +++.|+.+++|+......+. .+.+|.... ...|+|++.++++++.|+.+++|++..... +..+..|
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 9875543 44 44899999999888666666 688888775 448999999999999999999999987664 4444567
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee--CCCCCEEEEEECCCCCEEEEE-eCCCcEE
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASG-SLDKSMH 443 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~-s~dg~i~ 443 (490)
...+.++.|.|.+. .+++++.|+.+++|+........... .|...|..+.|++++..++.+ ..|+.+.
T Consensus 284 ~~~v~~~~~~~~~~---------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 354 (466)
T COG2319 284 SSSVLSVAFSPDGK---------LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354 (466)
T ss_pred CccEEEEEECCCCC---------EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence 88999999999554 45668888999999998887776665 788889999994343556555 6889999
Q ss_pred EEEcCCCeEEEEEecCCCEEEEEECCCCCEEEE-EECCCcEEEEEee
Q 011224 444 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA-CFANHTVCVLDFR 489 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~-~~~d~~v~v~~~~ 489 (490)
+|++..............+..+.|++ ...+.. +..++.+.+|+.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (466)
T COG2319 355 LWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLS 400 (466)
T ss_pred eeecCCCceeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecc
Confidence 99998877333333333388999999 544444 6888999999875
No 146
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=4e-22 Score=174.01 Aligned_cols=297 Identities=20% Similarity=0.394 Sum_probs=207.3
Q ss_pred eeccccccceeEEEECC----C-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 136 TILEGHTSEVCACAWSP----A-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp----~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
++...|+.+|.+++|++ + -..+||+|. ..+.+|....... ...+.... ...+...-..++|+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~----------ir~lq~y~--D~d~~Esfytcsw~ 98 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG----------IRLLQSYA--DEDHDESFYTCSWS 98 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc----------eeeeeecc--CCCCCcceEEEEEE
Confidence 45678999999999985 2 235666655 5688887643210 01111111 11234556677776
Q ss_pred CC----CCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 211 GE----GTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 211 ~~----~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
-+ ..+++.||.-|.|+|.|... .....+.+|..+|..++|+|.. +++++||.|.+||+||+++..++..|.+
T Consensus 99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG-- 176 (385)
T KOG1034|consen 99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG-- 176 (385)
T ss_pred ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--
Confidence 53 45889999999999999764 4556788999999999999976 6789999999999999999877654432
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
+.||.+.|.+++|+++|.+|++|+.|.+|++|++........+.
T Consensus 177 ------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE 220 (385)
T KOG1034|consen 177 ------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE 220 (385)
T ss_pred ------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh
Confidence 46899999999999999999999999999999998543221111
Q ss_pred cccccEEEEEEcCCCCCCC-------CCC------Cc----------EEEEEEECCCcEEEEeCC-CCe-----------
Q 011224 365 EHSKEIYTIRWSPTGSGTN-------NPN------QQ----------LILASASFDSTVKLWDVE-LGK----------- 409 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~-------~~~------~~----------~~l~sgs~dg~i~iwd~~-~~~----------- 409 (490)
.++.|+|++.... -|. +. .+++|-|.++.|..|... -.+
T Consensus 221 ------~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 221 ------LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred ------hhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 0112222221100 000 00 157888889999999762 111
Q ss_pred --EEEEeeCCCCCEEEEEE--CCCCCEEEEEeCCCcEEEEEcCCCeE--EEEEe---cCCCEEEEEECCCCCEEEEEECC
Q 011224 410 --LLYSLNGHREPVYSLAF--SPTGEYLASGSLDKSMHIWSLKEGKI--VKTYT---GNGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 410 --~~~~~~~h~~~v~~l~~--spdg~~l~s~s~dg~i~iw~~~~~~~--~~~~~---~~~~v~~~~~~~~g~~la~~~~d 480 (490)
.+.+++-....|+-|.| .|-+++||.|...|.|.+||++.... ..++. ....|-..+|+.||..|+....|
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence 12333333445666654 56689999999999999999987543 22222 23458899999999999999999
Q ss_pred CcEEEEEee
Q 011224 481 HTVCVLDFR 489 (490)
Q Consensus 481 ~~v~v~~~~ 489 (490)
++|.-||..
T Consensus 375 ~~Vwrwdrv 383 (385)
T KOG1034|consen 375 GTVWRWDRV 383 (385)
T ss_pred CcEEEEEee
Confidence 999999975
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.5e-22 Score=176.25 Aligned_cols=288 Identities=26% Similarity=0.441 Sum_probs=207.0
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc-------CCCCEEEE
Q 011224 146 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-------GEGTLLAT 218 (490)
Q Consensus 146 ~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-------~~~~~l~s 218 (490)
..+.|||||.-|++-+.|..+++|++....-.... .+++.... +..-++ .....|...+|- |+..++++
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~~~--~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNFSK--HLSYRY-QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCcccccc--ceeEEe-ccCCEEEEEEeeeccccCCCccceeee
Confidence 46889999999999999999999998643211111 11111111 000011 123457777875 67889999
Q ss_pred EeCCCeEEEEECC-CceeEEecC--CCC---CEEEEEecCCCCEEEEEeCCCeEEEEEc-cCcceeEeeeeeccCeEEEE
Q 011224 219 GSYDGQARIWSTN-GDLKCTLSK--HKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 219 g~~dg~i~iw~~~-~~~~~~~~~--h~~---~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~~~~~~~~~~~~~~~~~ 291 (490)
.+.+.-|++||.- ++..+.+.+ |.. +..+|+|+|+|.+|++|. .++|+++|+ +.+.....+. ..
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~--------t~ 199 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYT--------TV 199 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchh--------hh
Confidence 9999999999964 455554433 443 346899999999999875 578999998 4443111100 00
Q ss_pred ccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeeeccccccE
Q 011224 292 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 370 (490)
Q Consensus 292 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 370 (490)
.+--.+..+.+.|++|+|... .++.|+...++-||......++..+.+|.+.|
T Consensus 200 --------------------------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGv 253 (406)
T KOG2919|consen 200 --------------------------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGV 253 (406)
T ss_pred --------------------------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCe
Confidence 000113456789999999654 89999999999999998999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCCC-CeEEEEeeCCCC-CEEEEEE--CCCCCEEEEEeCCCcEEEE
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-GKLLYSLNGHRE-PVYSLAF--SPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~-~~~~~~~~~h~~-~v~~l~~--spdg~~l~s~s~dg~i~iw 445 (490)
+.++|.++|. -|.+|+ .|..|-.||++. ..+++.+..|.. .-..|-| .|+|++||+|+.||.|++|
T Consensus 254 ThL~~~edGn---------~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vw 324 (406)
T KOG2919|consen 254 THLQWCEDGN---------KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVW 324 (406)
T ss_pred eeEEeccCcC---------eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEE
Confidence 9999999996 456665 578899999985 456777877765 3334545 5889999999999999999
Q ss_pred EcCC-CeEEEEEec-CCCEEEEEECCCCCEEEEEECCC
Q 011224 446 SLKE-GKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 446 ~~~~-~~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
|+.+ |..+..+.. ...++.++++|.-.++|+++...
T Consensus 325 dlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 325 DLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 9988 664444433 34589999999988888887654
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.5e-22 Score=174.03 Aligned_cols=234 Identities=16% Similarity=0.256 Sum_probs=186.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
...|+.+.|+|.+..|+.++.||.+++|+...........|..|+.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~---- 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE---- 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----
Confidence 4679999999999999999999999999987765555567999999999987 45789999999999999987641
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 360 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 360 (490)
..+..|...|.|+.+++-...+++||.|++|++||.+....+
T Consensus 88 --------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 88 --------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred --------------------------------------eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 123458889999999998889999999999999999875555
Q ss_pred eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee--CCCCCEEEEEECCCCCEEEEEeC
Q 011224 361 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 361 ~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
..+.. ...|+++...-+ .|+.|..|..+.+||+++....+... ...-.+.+|++-|++.-.|.+|-
T Consensus 130 ~~~d~-~kkVy~~~v~g~-----------~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 130 GTFDQ-GKKVYCMDVSGN-----------RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred ccccc-CceEEEEeccCC-----------EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence 54433 347787765433 57889999999999999876544322 23456899999999888999999
Q ss_pred CCcEEEEEcCCC----eEEEEEecC----------CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 439 DKSMHIWSLKEG----KIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 439 dg~i~iw~~~~~----~~~~~~~~~----------~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
||.|.+=.+... +.-..|..| .+|++++|||--..||+|+.||.|.+||+.
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence 999887665544 222233222 257899999999999999999999999974
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=1.8e-22 Score=183.49 Aligned_cols=279 Identities=19% Similarity=0.316 Sum_probs=205.8
Q ss_pred cCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEECCC-----ceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEE
Q 011224 199 EKSKDVTTLDWNGEG--TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWD 270 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~-----~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd 270 (490)
.+...|++++|+|.. +++++|..-|+|-+||..+ .....+..|..+|.+|.|+|.+ ..+++.|.||+|++-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 346789999999954 5889999999999999842 2345778999999999999966 5799999999999999
Q ss_pred ccCcceeEeeee--eccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcc-eeEecCCCCCeeEEEEcCCCC-EEEEEeC
Q 011224 271 VKTEEWKQQFEF--HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGS-LLASCSD 345 (490)
Q Consensus 271 ~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~-~l~s~~~ 345 (490)
+++......+.. ...-...+++. .+..++.+..=|...+||++.+.. ...+.-|...|++|+++|-.. +|||||.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 987653333322 11122334443 233444455445788899887654 455667888999999999875 5899999
Q ss_pred CCeEEEEecCCCce----eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC----CCeEEEEeeCC
Q 011224 346 DVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKLLYSLNGH 417 (490)
Q Consensus 346 dg~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~----~~~~~~~~~~h 417 (490)
|++++|||++.-.. +.....|...|.+..|||.+. -|++-+.|..|+|||.. ...++.++. |
T Consensus 344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---------tl~TT~~D~~IRv~dss~~sa~~~p~~~I~-H 413 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---------TLLTTCQDNEIRVFDSSCISAKDEPLGTIP-H 413 (498)
T ss_pred CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC---------ceEeeccCCceEEeecccccccCCccceee-c
Confidence 99999999875322 233456889999999999986 48889999999999983 223333332 2
Q ss_pred C----C--CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC--CEEE-EEECCCCCEEEE-EECCCcEEEEE
Q 011224 418 R----E--PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG--GIFE-VCWNKEGDKIAA-CFANHTVCVLD 487 (490)
Q Consensus 418 ~----~--~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~--~v~~-~~~~~~g~~la~-~~~d~~v~v~~ 487 (490)
. . ......|.|+..++++|-.-..|-|||-..++++..+.... .|.+ ..|||-+..+|+ +...|.|+||-
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 2 1 23456899999999999999999999999888777754432 2333 569999985555 56678888884
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=2.5e-23 Score=190.80 Aligned_cols=236 Identities=21% Similarity=0.376 Sum_probs=196.5
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 223 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 223 (490)
-|++|.++|||+.|++||.-.++-|||+...... ++.......-...+++.+||.+.++++..||
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTpr---------------ikaeltssapaCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR---------------IKAELTSSAPACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcc---------------hhhhcCCcchhhhhhhcCCccceeeeeccCC
Confidence 4688899999999999999999999999765421 1112222223466788999999999999999
Q ss_pred eEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEc
Q 011224 224 QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS 302 (490)
Q Consensus 224 ~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (490)
+|.|||+..+ .+..|.+|++.+.||..+++|..|-||+-|.+||.||++++...+...
T Consensus 532 nI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd--------------------- 590 (705)
T KOG0639|consen 532 NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD--------------------- 590 (705)
T ss_pred cEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh---------------------
Confidence 9999998754 567899999999999999999999999999999999998875333221
Q ss_pred CCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCC
Q 011224 303 TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 382 (490)
Q Consensus 303 ~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~ 382 (490)
....|.++.++|++.+|+.|-.++.+.|-.... ...+.+..|...|.++.|++.|.
T Consensus 591 ---------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGk-- 646 (705)
T KOG0639|consen 591 ---------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGK-- 646 (705)
T ss_pred ---------------------hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCc--
Confidence 134577888999999999999999988877543 33445677899999999999997
Q ss_pred CCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 383 NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 383 ~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
++++.+.|+.+..|...-|..++..+ -..+|.++..|.|.+||+|||.|....||.+
T Consensus 647 -------wfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 647 -------WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -------eeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 78999999999999999899888887 4578999999999999999999998888875
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=8.3e-23 Score=181.28 Aligned_cols=219 Identities=25% Similarity=0.436 Sum_probs=169.1
Q ss_pred EecCCCCCEEEEEecCCC--CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC
Q 011224 237 TLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 314 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 314 (490)
....|.+.+.-+.-.+.+ .+.++-+..|.|.|||+...-. .+. ..+.. .....
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~--~l~---------------------~~~~~--~~~s~ 200 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLN--ALS---------------------EPGLE--VKDSE 200 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhh--hhc---------------------Ccccc--ccccc
Confidence 445677777777766654 4566677789999999854210 000 00000 00135
Q ss_pred CcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCCcee---eeeccccccEEEEEEcCCCCCCCCCCCcEE
Q 011224 315 NRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYV---HDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390 (490)
Q Consensus 315 ~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~ 390 (490)
.+|+.++.+|.+.=.+++|||-.. .++||.--+.|++|...++... ..|.+|...|-.++|||... .+
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~--------~v 272 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED--------GV 272 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccC--------ce
Confidence 678999999999999999999332 3678888889999998877653 34567999999999999865 38
Q ss_pred EEEEECCCcEEEEeCCCC---eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC---eEEEEEec-CCCEE
Q 011224 391 LASASFDSTVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---KIVKTYTG-NGGIF 463 (490)
Q Consensus 391 l~sgs~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~---~~~~~~~~-~~~v~ 463 (490)
|+|||.||+|+|||++.+ .++.+ ++|..-|+.|+|+..-.+||+|+.||+++|||+++. +.+.+|.. ...|+
T Consensus 273 faScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIt 351 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPIT 351 (440)
T ss_pred EEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCee
Confidence 999999999999999987 34433 889999999999999889999999999999999864 45677754 56799
Q ss_pred EEEECCC-CCEEEEEECCCcEEEEEee
Q 011224 464 EVCWNKE-GDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 464 ~~~~~~~-g~~la~~~~d~~v~v~~~~ 489 (490)
++.|+|. ...||+++.|.+|++||+.
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEee
Confidence 9999995 4688888999999999985
No 152
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.90 E-value=8.4e-22 Score=176.66 Aligned_cols=288 Identities=21% Similarity=0.424 Sum_probs=192.0
Q ss_pred ccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 142 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 142 ~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
..+|..+.|.++.. .|||||.|..|+||.+..+...++. ..+. .......|...|+++.|+|+|.+|+||+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----~~V~----y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----MKVE----YLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----eeEE----EeecccCCcceeEEEEEcCCcCeeeecC
Confidence 35799999999866 9999999999999998765433211 1121 2233455788999999999999999999
Q ss_pred CCCeEEEEECC--------C-----c----eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 221 YDGQARIWSTN--------G-----D----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 221 ~dg~i~iw~~~--------~-----~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
.+|.|.+|... . . ....+.+|...|+.++|+|++.++++++.|.++++||+..+.....+..
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d- 163 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD- 163 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-
Confidence 99999999754 1 1 2346778999999999999999999999999999999998876655544
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
|...+..++|.|-++++++-+.|...+.+.+...+.++..
T Consensus 164 ----------------------------------------h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 164 ----------------------------------------HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred ----------------------------------------cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeee
Confidence 4445555555555555555555554444443322221110
Q ss_pred c-------------------ccc----ccEEEEEEcCCCCCCCCCCCcEEEEEEEC----CC-----cEEEEeCC-CCeE
Q 011224 364 R-------------------EHS----KEIYTIRWSPTGSGTNNPNQQLILASASF----DS-----TVKLWDVE-LGKL 410 (490)
Q Consensus 364 ~-------------------~~~----~~i~~v~~~p~g~~~~~~~~~~~l~sgs~----dg-----~i~iwd~~-~~~~ 410 (490)
. .|. .-...++|+|+|. +|++.+. .+ +.++|+-. ..++
T Consensus 204 ~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~---------llvtPag~~~~g~~~~~n~tYvfsrk~l~rP 274 (434)
T KOG1009|consen 204 GLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS---------LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP 274 (434)
T ss_pred eeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc---------EEEcccceeeeCCceeeceeEeeccccccCc
Confidence 0 011 1124567888886 3333221 11 22333321 1234
Q ss_pred EEEeeCCCCCEEEEEECC------------------CCCEEEEEeCCCcEEEEEcCCCeEEEEEe--cCCCEEEEEECCC
Q 011224 411 LYSLNGHREPVYSLAFSP------------------TGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKE 470 (490)
Q Consensus 411 ~~~~~~h~~~v~~l~~sp------------------dg~~l~s~s~dg~i~iw~~~~~~~~~~~~--~~~~v~~~~~~~~ 470 (490)
...+.+-..++..+.|+| -+-.+|.++.+ .|.|||..+-..+.... +...+++++|+++
T Consensus 275 ~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 275 AARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred eeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCC
Confidence 455555556666666654 22245566654 69999988755443332 3457999999999
Q ss_pred CCEEEEEECCCcEEEEEe
Q 011224 471 GDKIAACFANHTVCVLDF 488 (490)
Q Consensus 471 g~~la~~~~d~~v~v~~~ 488 (490)
|..|+..+.||.+.+..|
T Consensus 354 g~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 354 GSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred CcEEEEeccCCceEEEEE
Confidence 999999999999887765
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.8e-23 Score=207.50 Aligned_cols=241 Identities=25% Similarity=0.499 Sum_probs=192.1
Q ss_pred CCeEEEEEcCCCCE----EEEEeCCCeEEEEECCC-------ceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEE
Q 011224 202 KDVTTLDWNGEGTL----LATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVW 269 (490)
Q Consensus 202 ~~V~~~~~s~~~~~----l~sg~~dg~i~iw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iw 269 (490)
..-..++|.+.|.. |+.|..||+|-+|+... ..+.+...|+++|.+|.|++... .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34678999987765 88899999999999653 23446788999999999999764 99999999999999
Q ss_pred EccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEEEEEeCCCe
Q 011224 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVT 348 (490)
Q Consensus 270 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~ 348 (490)
|+..-+.--.+. -..-...|.+++|+.. .+.|++++.+|+
T Consensus 145 Dlnn~~tP~~~~---------------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 145 DLNKPETPFTPG---------------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred ccCCcCCCCCCC---------------------------------------CCCCcccceEeccchhhhHHhhccCCCCC
Confidence 997632110000 0012457889999875 456899999999
Q ss_pred EEEEecCCCceeeeeccccc--cEEEEEEcCCCCCCCCCCCcEEEEEEECC---CcEEEEeCCCC-eEEEEeeCCCCCEE
Q 011224 349 AKIWNMKQDKYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELG-KLLYSLNGHREPVY 422 (490)
Q Consensus 349 i~iwd~~~~~~~~~~~~~~~--~i~~v~~~p~g~~~~~~~~~~~l~sgs~d---g~i~iwd~~~~-~~~~~~~~h~~~v~ 422 (490)
+.|||++..+.+..+..+.. .+..+.|+|+... .|++++.| -.|.+||+|.- ..+.++.+|...|.
T Consensus 186 ~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT--------ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil 257 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT--------QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL 257 (1049)
T ss_pred ceeccccCCCcccccccCCCccceeeeeeCCCCce--------eeeeecCCCCCceeEeecccccCCchhhhccccccee
Confidence 99999999988877766554 4678999998763 34444443 36999999854 56777889999999
Q ss_pred EEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCC-EEEEEECCCcEEEEEee
Q 011224 423 SLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGD-KIAACFANHTVCVLDFR 489 (490)
Q Consensus 423 ~l~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~-~la~~~~d~~v~v~~~~ 489 (490)
++.|++.+ .+|+|++.|++|.+|+.++|+++..+...+ .++.+.|.|..- .+|+++-+|.|.||.+.
T Consensus 258 slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 258 SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred eeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 99999977 899999999999999999999999887643 589999999875 88889999999999875
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=2e-21 Score=176.65 Aligned_cols=290 Identities=18% Similarity=0.320 Sum_probs=212.4
Q ss_pred eeccccccceeEEEECCCC--CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-C
Q 011224 136 TILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 212 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~--~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~ 212 (490)
...+-|...|++++|+|.. +++|+|..-|.|-+||+.+..... . ... ....|+.+|.++.|+| +
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------d--~v~----~f~~hs~~Vs~l~F~P~n 246 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------D--GVY----LFTPHSGPVSGLKFSPAN 246 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------C--ceE----EeccCCccccceEecCCC
Confidence 3456688999999999974 588899999999999995221110 0 001 1235789999999999 4
Q ss_pred CCEEEEEeCCCeEEEEECCCceeE---EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcce-eEeeeeeccCeE
Q 011224 213 GTLLATGSYDGQARIWSTNGDLKC---TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTL 288 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~~~~---~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~ 288 (490)
-..+++.++||+|++-|.++.... .+..-.....++.|+.+...++.+..=|...+||+++..- ...+..|...|.
T Consensus 247 ~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 247 TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred hhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 578999999999999998764332 2222334567778888877788888778999999988654 455666777777
Q ss_pred EEEcc--CCceEEEEcCCCeEEEEEcCCCc----ceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC----CCc
Q 011224 289 DVDWR--NNVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK----QDK 358 (490)
Q Consensus 289 ~~~~~--~~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~----~~~ 358 (490)
.+++. ....+++++.|+++++||++.-. |+.....|...|.++.|||++-.|+|.+.|..|+|||.. ...
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 77765 45678999999999999987532 344556799999999999999889999999999999973 222
Q ss_pred eeeeecccc------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC-CCCEEE-EEECCCC
Q 011224 359 YVHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYS-LAFSPTG 430 (490)
Q Consensus 359 ~~~~~~~~~------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~-l~~spdg 430 (490)
+..++. |. -......|.|+.. ++++|-.-..|-|+|-..++.+..+..- ...|.+ ..|+|-+
T Consensus 407 p~~~I~-Hn~~t~RwlT~fKA~W~P~~~---------li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~ 476 (498)
T KOG4328|consen 407 PLGTIP-HNNRTGRWLTPFKAAWDPDYN---------LIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMR 476 (498)
T ss_pred ccceee-ccCcccccccchhheeCCCcc---------EEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccc
Confidence 222221 21 1234457888653 8899999999999999988878775433 235655 4899998
Q ss_pred CEEE-EEeCCCcEEEEEcC
Q 011224 431 EYLA-SGSLDKSMHIWSLK 448 (490)
Q Consensus 431 ~~l~-s~s~dg~i~iw~~~ 448 (490)
..++ .++.-|.|+||.-+
T Consensus 477 ~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 477 DTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeccCCccceEEEEecC
Confidence 8454 45567888888654
No 155
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=168.29 Aligned_cols=288 Identities=16% Similarity=0.298 Sum_probs=202.4
Q ss_pred CCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 131 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 131 ~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
|....++|.... -.||.||+-|.+||+|..||.|.|||+.+... ......|..+|++++||
T Consensus 14 PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~WS 74 (405)
T KOG1273|consen 14 PEELTHTLDNPL--AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCWS 74 (405)
T ss_pred hHhhceeccCCc--cceEEeccCcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEec
Confidence 444445554322 68999999999999999999999999876431 12234567889999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeecc---
Q 011224 211 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--- 285 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--- 285 (490)
++|+.|+|++.|..|.+||+.. .+...+ ...++|+...|+|... .++++-.+..-.+-++.... ...+.....
T Consensus 75 ~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~-h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 75 RDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK-HSVLPKDDDGDL 152 (405)
T ss_pred CCCCEeeeecCCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc-eeeccCCCcccc
Confidence 9999999999999999999754 444443 3578999999999654 34444444444444433211 111111100
Q ss_pred -Ce-EEEEc-cCCceEEEEcCCCeEEEEEcCCCcceeEecCCC-CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC----
Q 011224 286 -PT-LDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD---- 357 (490)
Q Consensus 286 -~~-~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~---- 357 (490)
.+ ....| +....+++|...|.+.+++..+.+.+..++-.. ..|..+-++..|++|+.-+.|..||.|++..-
T Consensus 153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 00 01113 244567889999999999999888887776554 67888999999999999999999999987521
Q ss_pred --cee---eeecc--ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-CCEEEEEECCC
Q 011224 358 --KYV---HDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPT 429 (490)
Q Consensus 358 --~~~---~~~~~--~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~spd 429 (490)
..+ +.++. ...+-.+++|+.+|. ++.|+......++||....|.++..+.|.. ....++.|+|-
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge--------Yv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGE--------YVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCcc--------EEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 111 11110 111234567777664 344444556779999999999999998877 56788999999
Q ss_pred CCEEEEEeCCCcEEEEEcC
Q 011224 430 GEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 430 g~~l~s~s~dg~i~iw~~~ 448 (490)
...|++- ..|.|+||...
T Consensus 305 rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred eeeeeec-cCCceEEEEee
Confidence 9888887 67899999864
No 156
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=185.18 Aligned_cols=275 Identities=19% Similarity=0.327 Sum_probs=206.7
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 223 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 223 (490)
.|+.++|-|||..|+.+.. ..+.+||..+|... ..+ .+|...|.|++|+.||+.|+||+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~ll-------------qtL----KgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLL-------------QPL----KGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccc-------------ccc----ccccceEEEEEEccCCceeccCCCce
Confidence 7999999999997777654 46889999877532 122 34577899999999999999999999
Q ss_pred eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcC
Q 011224 224 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST 303 (490)
Q Consensus 224 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (490)
.|.+|+..-+-... ..|++.|.++.|+|-.+.|+||+-. ..-+|........
T Consensus 76 ~VI~W~~klEG~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-------------------------- 127 (1081)
T KOG1538|consen 76 SVIIWTSKLEGILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-------------------------- 127 (1081)
T ss_pred eEEEecccccceee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH--------------------------
Confidence 99999864322222 3699999999999999999999853 3445644322110
Q ss_pred CCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee---ccccccEEEEEEcCCCC
Q 011224 304 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL---REHSKEIYTIRWSPTGS 380 (490)
Q Consensus 304 d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~v~~~p~g~ 380 (490)
.. .....+.+++|..||++++.|-.+|+|.|-+-. +.....+ -+...+|++++|+|...
T Consensus 128 ----------------K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 128 ----------------KH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred ----------------hh-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCC
Confidence 00 013468899999999999999999999997543 3322222 24678999999999754
Q ss_pred CCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-C
Q 011224 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-N 459 (490)
Q Consensus 381 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~ 459 (490)
. ...-+++...+..++.++.+. |+.+..-....-.-.+|.+-|+|.|+..||.|+.+++|. ++|-.+.+... .
T Consensus 190 ~----G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 190 E----GRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD 263 (1081)
T ss_pred C----CccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccc
Confidence 2 112378888999999988875 555543333333457899999999999999999999997 45666666643 4
Q ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 460 GGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 460 ~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
..|+.++.+|.++.++.|+.||+|.-||+
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 57999999999999999999999998875
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=3.8e-19 Score=175.76 Aligned_cols=327 Identities=29% Similarity=0.579 Sum_probs=251.0
Q ss_pred eeeccccc-cceeEEEE-CCCCC-EEEEEEC-CCcEEEEecCC-CCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 135 VTILEGHT-SEVCACAW-SPAGS-LLASGSG-DSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 135 ~~~l~~H~-~~V~~~~~-sp~~~-~l~sgs~-D~~i~~Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
+..+.++. ..+..+.+ ++++. +++..+. |+.+++|++.. .. ... ....|...|..++|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------~~~----~~~~~~~~v~~~~~ 163 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-------------LIR----TLEGHSESVTSLAF 163 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-------------EEE----EEecCcccEEEEEE
Confidence 45555544 37777777 88887 5555444 99999999865 11 111 12335677899999
Q ss_pred cCCCCEEEEEeC-CCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeE-eeeeecc
Q 011224 210 NGEGTLLATGSY-DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSG 285 (490)
Q Consensus 210 s~~~~~l~sg~~-dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~ 285 (490)
+|++.++++++. ++.+++|+... .....+.+|...|.+++|+|++. .+++++.|+++++||...+.... .+..|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 243 (466)
T COG2319 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243 (466)
T ss_pred CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence 999999999886 99999999874 56667888999999999999998 55666999999999988777776 5666666
Q ss_pred CeEEEEccCC-ceEEEEcCCCeEEEEEcCCCcc-eeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 286 PTLDVDWRNN-VSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 286 ~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
.. ...|... ..+++++.++.+++|+...... +..+.+|...+.++.|+|++..+++++.|+.+++|+..+.......
T Consensus 244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 54 2245444 4677899999999999987665 5555688899999999999888888999999999999888766665
Q ss_pred c--cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE-EeCCC
Q 011224 364 R--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-GSLDK 440 (490)
Q Consensus 364 ~--~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s-~s~dg 440 (490)
. .|...+..+.| +... ..++.++..|+.+++|++............ ..+..+.+++ ...+++ ++.++
T Consensus 323 ~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 323 TLKGHEGPVSSLSF-SPDG-------SLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred eecccCCceEEEEE-CCCC-------CEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCC
Confidence 5 67777889988 4220 124444468899999999877733333322 2288999999 544444 68899
Q ss_pred cEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 441 SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 441 ~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+.+|+............. ..+..+.+++++..++.+..++++.+|+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 9999999988877776665 679999999999999999999999999875
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=185.10 Aligned_cols=267 Identities=23% Similarity=0.330 Sum_probs=195.4
Q ss_pred CCEEEEEeCCCeEEEEECCCc-------eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe--eeee
Q 011224 213 GTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ--FEFH 283 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~ 283 (490)
...|+.+..||.|.+++.... .......|.++|..+.|-|....|++++.|.++++||+.+..+... +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 457899999999999997532 1234567999999999999777899999999999999999988776 8889
Q ss_pred ccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCc--------------------ce-------eEecCCCCCeeE---E
Q 011224 284 SGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENR--------------------PI-------KTFAGHQGEVNC---V 331 (490)
Q Consensus 284 ~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~--------------------~~-------~~~~~h~~~v~~---v 331 (490)
.+.+.++.|. +...|++|+.|+.|.+||++... +. .....|...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 8888877774 66789999999999999987543 11 111223344444 5
Q ss_pred EEcCCCCEEEEEeC-CCeEEEEecCCCceeee--------eccc---cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc
Q 011224 332 KWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD--------LREH---SKEIYTIRWSPTGSGTNNPNQQLILASASFDST 399 (490)
Q Consensus 332 ~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~ 399 (490)
.+..|...||+++. |+.|+|||++....... +..| .-.+.++.....|. +++|+|. |+.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt--------~L~AsCt-D~s 294 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT--------YLFASCT-DNS 294 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC--------eEEEEec-CCc
Confidence 56678889999988 99999999987644322 1112 11234444444443 3555555 999
Q ss_pred EEEEeCCCC--eEEEEeeCCCCCE--EEEEECCCCCEEEEEeCCCcEEEEEcCCCeE-EEEEecCC-CEEEEEECCCC-C
Q 011224 400 VKLWDVELG--KLLYSLNGHREPV--YSLAFSPTGEYLASGSLDKSMHIWSLKEGKI-VKTYTGNG-GIFEVCWNKEG-D 472 (490)
Q Consensus 400 i~iwd~~~~--~~~~~~~~h~~~v--~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~-~~~~~~~~-~v~~~~~~~~g-~ 472 (490)
|.+|++..- .++..+.++...- ..-..+|++.+|++|+.|....+|.+.+-.. ...+.++. .|+.++|.|.- .
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 999999754 3455555553221 1224689999999999999999999987554 33444444 48999999964 4
Q ss_pred EEEEEECCCcEEEEEe
Q 011224 473 KIAACFANHTVCVLDF 488 (490)
Q Consensus 473 ~la~~~~d~~v~v~~~ 488 (490)
-+|+|+.|.++.||++
T Consensus 375 ~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRL 390 (720)
T ss_pred CceeeccCcceEEEec
Confidence 7788899999999986
No 159
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.9e-21 Score=182.23 Aligned_cols=281 Identities=21% Similarity=0.337 Sum_probs=211.3
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCE-EEEEeCCCeEEEEEccCcc
Q 011224 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 197 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~ 275 (490)
+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+..........+.|.+|+|+|.+.. +++.+....+.|-+..-+.
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 456789999999999999999999999999999765433322234568999999998753 3444444445555542221
Q ss_pred e-------------------------------------eEeeeeeccCeEEEEccCCc-eEEEEc---CCCeEEEEEcCC
Q 011224 276 W-------------------------------------KQQFEFHSGPTLDVDWRNNV-SFATSS---TDNMIYVCKIGE 314 (490)
Q Consensus 276 ~-------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~---~d~~i~~~~~~~ 314 (490)
. +.....|..++..+.|+... .|++.. ....|.+..+..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 0 11222344556677786544 344332 345788888877
Q ss_pred CcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 315 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 315 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
.+....|.-..+.|.++.|+|...+|+.++. ..|+|||+.....+..+......|.+++.+|.|. -|+.|
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD---------nli~g 625 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD---------NLILG 625 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC---------eEEEe
Confidence 6655566666788999999999999888765 5799999998888888777778899999999886 36779
Q ss_pred ECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC------CCeE---EEEEecC-----
Q 011224 395 SFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK------EGKI---VKTYTGN----- 459 (490)
Q Consensus 395 s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~------~~~~---~~~~~~~----- 459 (490)
+.|+.+..||+.-+ ++..++..|...|++|+|++.-.++++|+.||++.||.-. ..-+ ++.+.++
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND 705 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence 99999999999855 4566788899999999999999999999999999999632 1111 3344443
Q ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 460 GGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 460 ~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.+|.++.|||..-.|.+++.|++|++|.
T Consensus 706 ~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 706 LGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cceEeecccCCCceEEecCCCceEEeeC
Confidence 4688999999999999999999999983
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=185.09 Aligned_cols=285 Identities=21% Similarity=0.299 Sum_probs=202.1
Q ss_pred eEEEECCC---CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 146 CACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 146 ~~~~~sp~---~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
.++.|++- .+.||.+-.||.|.++|....... +....++ ....|...|..+.|-|....|++++.|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------~ee~~lk----~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------LEERQLK----KPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc-------hhhhhhc----ccccccceeEeeccCCCceeEEEccCC
Confidence 34667663 468999999999999997543211 0000111 123456789999999977889999999
Q ss_pred CeEEEEECCCce-eE--EecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcce-------eEeeeee--------
Q 011224 223 GQARIWSTNGDL-KC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-------KQQFEFH-------- 283 (490)
Q Consensus 223 g~i~iw~~~~~~-~~--~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~-------- 283 (490)
.++++||+.+.. .. .+.+|++.|.+++|.|.+ ..|++|+.||.|.|||++.... ...+..|
T Consensus 122 sT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 999999987543 22 478999999999999976 4689999999999999864320 0111111
Q ss_pred ------------c----cCeEEEEccCCceEEEEcC-CCeEEEEEcCCCcce--------eEecCC---CCCeeEEEEcC
Q 011224 284 ------------S----GPTLDVDWRNNVSFATSST-DNMIYVCKIGENRPI--------KTFAGH---QGEVNCVKWDP 335 (490)
Q Consensus 284 ------------~----~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~~--------~~~~~h---~~~v~~v~~~~ 335 (490)
. +.|..+-|.++..+++++. |+.|+|||++..... ..+..| ...+.++....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 1 1234456677788888776 999999999875432 222233 23467788888
Q ss_pred CCCEEEEEeCCCeEEEEecCCCc--eeeeeccccccEEE--EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE-
Q 011224 336 TGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYT--IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL- 410 (490)
Q Consensus 336 ~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~--v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~- 410 (490)
.|.++...+.|+.|.+|++.+.. ++..+.++...-.. -..+|++. +|++|+.|....+|.+.+.+.
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---------~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---------SLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc---------eEeccCCCcceeeeeecCccCC
Confidence 88887777779999999997643 23333333222111 13456664 799999999999999986543
Q ss_pred EEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCC
Q 011224 411 LYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 411 ~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~ 450 (490)
...+.+|...|++++|.|.. .-+||++.|.+++||++..+
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 45678999999999998864 45777899999999999654
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=171.30 Aligned_cols=287 Identities=17% Similarity=0.247 Sum_probs=198.5
Q ss_pred cCCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 130 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 130 ~~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
+|+.+...|++|.+.|+++.|-.+++ |++|..-|.|++|++++...... ++ ..+...|+.+.-
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~-------------~r---~~g~~~it~lq~ 64 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL-------------IR---LFGRLFITNLQS 64 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchh-------------hh---hhccceeeceee
Confidence 46778899999999999999988776 88999999999999987543211 11 123456777777
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCC-eEEEEEcc---------CcceeEe
Q 011224 210 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-TAIVWDVK---------TEEWKQQ 279 (490)
Q Consensus 210 s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-~v~iwd~~---------~~~~~~~ 279 (490)
-|+ ..+.+-+.|+.+.+|+...... +.-|.-.+.++.|.+.. ++..+... ..-.++-+ .+...+.
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~--i~i~Si~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv 139 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAF--ISIHSIVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQV 139 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcce--EEEeeeeccccccccce--eccCCCcchhheecCCcccchhhhhccCcccee
Confidence 776 5677889999999999765321 22233444445443321 11111111 11111110 1111111
Q ss_pred --e----eeeccCeEEEEcc----CCceEEEEcCCCeEEEEEcCCC----------cceeEecCCCCCeeEEEEcCCCCE
Q 011224 280 --F----EFHSGPTLDVDWR----NNVSFATSSTDNMIYVCKIGEN----------RPIKTFAGHQGEVNCVKWDPTGSL 339 (490)
Q Consensus 280 --~----~~~~~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~~~----------~~~~~~~~h~~~v~~v~~~~~~~~ 339 (490)
. ....+.+++.++. ....++++..+|.+.+|++..+ +.+..+..|..+|.++.+.+.-..
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r 219 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR 219 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC
Confidence 0 1123445565542 2234567889999999999886 333445678999999999876655
Q ss_pred EEEEeCCCeEEEEecCCC--ce-e-eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee
Q 011224 340 LASCSDDVTAKIWNMKQD--KY-V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 415 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~~--~~-~-~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 415 (490)
=++|+.+..+..|++... .+ + .++......+..+...|++. ++||+++|+.||+|..++..++..++
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K---------IlATAGWD~RiRVyswrtl~pLAVLk 290 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK---------ILATAGWDHRIRVYSWRTLNPLAVLK 290 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc---------EEeecccCCcEEEEEeccCCchhhhh
Confidence 678888888999987643 21 1 12222334566777788886 89999999999999999999999999
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
-|++.|++++|+|+...+|+||.|++|-+|++
T Consensus 291 yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999986
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-21 Score=177.34 Aligned_cols=249 Identities=22% Similarity=0.397 Sum_probs=177.8
Q ss_pred CCEEEEEECCCcEEEEecCCCCC-CCCCCCCCceeEEE---EeeecccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 011224 154 GSLLASGSGDSTARIWTIADGTS-NGGAQNGPLNVLVL---KHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIW 228 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw 228 (490)
|+++|.|..|..|.|||+.-... .+....|....... +.......+|+..|.+|+|+.. ...|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 57999999999999999852211 11111111100000 0111123467788999999875 4689999999999999
Q ss_pred ECCC-ceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCccee-EeeeeeccCeEEEEcc--CCceEEEEcC
Q 011224 229 STNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR--NNVSFATSST 303 (490)
Q Consensus 229 ~~~~-~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~ 303 (490)
|+.. .+..++..|.+.|.++.|+|.. .+|++||.|++|.+.|.+..... ..+. -.+.+-.+.|. ....|+.+..
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecC
Confidence 9874 5666788899999999999965 67999999999999999842211 1222 23345555554 4567888999
Q ss_pred CCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCce--eeeeccccccEEEEEEcCCC
Q 011224 304 DNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTG 379 (490)
Q Consensus 304 d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~v~~~p~g 379 (490)
||+++-+|++.. +++.++..|.++|.++++++.- .+++|++.|+.+++|++..... +..-...-+...|.++.|+-
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence 999999999876 8999999999999999998765 4689999999999999865433 22211122334555555554
Q ss_pred CCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE
Q 011224 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLL 411 (490)
Q Consensus 380 ~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 411 (490)
. .+|+.|+..+.++|||+.+...+
T Consensus 431 a--------~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 431 A--------FTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred c--------eEEEecCccceEEEeecccChhH
Confidence 3 47899999999999998766543
No 163
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=175.63 Aligned_cols=240 Identities=17% Similarity=0.275 Sum_probs=189.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCce---eEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCc
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTE 274 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~---~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~ 274 (490)
+..+.|+++.|+|....|++|+.||+++||.++++. +..+.-...||.+.+|.|+|+ .+++++.-+.+..||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 345789999999999999999999999999988753 344455678999999999999 8999999999999999876
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCC-CCeeEEEEcCCCCEEEEEeCCCeEEEEe
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWN 353 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~dg~i~iwd 353 (490)
+..+ +....|+. ..+.....+|++++|+..+..|.|.+.-
T Consensus 291 k~~k---------------------------------------~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 291 KVTK---------------------------------------LKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred cccc---------------------------------------ccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh
Confidence 5322 11122232 2456678899999999999999999999
Q ss_pred cCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCC--EEEEEECCCCC
Q 011224 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP--VYSLAFSPTGE 431 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~spdg~ 431 (490)
..++..+.+++. .+.+..++|+.++. .|.+++.+|.|.+||++...+++.+... +. =++++.|++|.
T Consensus 332 akT~eli~s~Ki-eG~v~~~~fsSdsk---------~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ 400 (514)
T KOG2055|consen 332 AKTKELITSFKI-EGVVSDFTFSSDSK---------ELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGS 400 (514)
T ss_pred hhhhhhhheeee-ccEEeeEEEecCCc---------EEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCc
Confidence 999998888764 56789999998875 4556667899999999999888887632 23 36788899999
Q ss_pred EEEEEeCCCcEEEEEcCCC------eEEEEEec-CCCEEEEEECCCCCEEEEEEC--CCcEEEEEe
Q 011224 432 YLASGSLDKSMHIWSLKEG------KIVKTYTG-NGGIFEVCWNKEGDKIAACFA--NHTVCVLDF 488 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~------~~~~~~~~-~~~v~~~~~~~~g~~la~~~~--d~~v~v~~~ 488 (490)
|||+||..|.|.|||..+- +.++++.. -..|++++|+||+.+||.|+. ...+++.++
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 9999999999999996542 23333322 246899999999999998864 445665543
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.8e-21 Score=169.49 Aligned_cols=293 Identities=17% Similarity=0.239 Sum_probs=211.0
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
..+.+|++.|+++.||.++++|++||.|..+++|.+...-..+. ..|+. +.+ ..|...|.|++|....++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--~KPI~------~~~--~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--PKPIG------VME--HPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--CCCce------ecc--CccccceEEEEEccCCee
Confidence 45789999999999999999999999999999999764211111 01111 112 234578999999999999
Q ss_pred EEEEeCCCeEEEEECCCceeEEecCCCC---CEEEEEecCCCCEEEEEeCCCeEEEEEccCcce-eEeeeee--ccCeEE
Q 011224 216 LATGSYDGQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFH--SGPTLD 289 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~--~~~~~~ 289 (490)
+++|+.+++|.+-|++.........|.. .|+.+..+|..+.|++.+.+|.|.+||.+...- ...+... ......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 9999999999999998776655556655 999999999999999999999999999986542 2211111 112333
Q ss_pred EEcc--CCceEEEEcCCCeEEEEEcCCCc-ceeEecCC---C---CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce-
Q 011224 290 VDWR--NNVSFATSSTDNMIYVCKIGENR-PIKTFAGH---Q---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY- 359 (490)
Q Consensus 290 ~~~~--~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h---~---~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 359 (490)
+-|. ....+++.+..+-+-+|+++... ++..+.+. . ..-.++.|+|+|+.|.+--.-..-.+||+.+.++
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 4443 34567777888888899987543 33333222 1 2336789999999988776666666788766443
Q ss_pred eeeeccc------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC----------C-------------eE
Q 011224 360 VHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----------G-------------KL 410 (490)
Q Consensus 360 ~~~~~~~------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~----------~-------------~~ 410 (490)
+..+... ...+.+++|.-+- -+++|+.+-.|++|.+.. | +.
T Consensus 280 V~k~D~N~~GY~N~~T~KS~~F~~D~----------~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 280 VLKSDHNPNGYCNIKTIKSMTFIDDY----------TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eEeccCCCCcceeeeeeeeeeeecce----------eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 3222211 1234455554432 489999999999998642 1 23
Q ss_pred EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 411 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 411 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
+..++||...++.|.|+|...+|++.|-.+.++||.-.
T Consensus 350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 45789999999999999999999999999999999754
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.2e-20 Score=173.12 Aligned_cols=262 Identities=18% Similarity=0.299 Sum_probs=203.9
Q ss_pred ceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 144 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 144 ~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
+|+.+.|+.... .+++-+.|..+++|.-... .+ .+.......+ ..-.|++......|+++||..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~-------~Vp~~~k~~g------d~~~Cv~~~s~S~y~~sgG~~ 100 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TP-------EVPRVRKLTG------DNAFCVACASQSLYEISGGQS 100 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCC--CC-------ccceeecccc------chHHHHhhhhcceeeeccCcC
Confidence 488999987654 3344568889999973321 00 0111111111 123444444455899999999
Q ss_pred CeEEEEECCCcee-EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC-eEEEEccCC--ceE
Q 011224 223 GQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNN--VSF 298 (490)
Q Consensus 223 g~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~ 298 (490)
+.|+|||+..+.+ ..+.+|+..|+++.++-...||++++-.|-|.|..+.++.....|....+. +..+.|... ..+
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceee
Confidence 9999999986554 367899999999999999999999999999999999998877777766444 446777644 445
Q ss_pred EEEcCCCeEEEEEcCCCcceeEe-cCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 299 ATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
.+++++|.|.+||+....|+..+ ..|..+...|+|+|.. .+|++.+.|..|.+||+...+....+. ...+..+++|+
T Consensus 181 ~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~ 259 (673)
T KOG4378|consen 181 SIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFS 259 (673)
T ss_pred EeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeec
Confidence 67899999999999988887665 4789999999999975 568999999999999998776665553 45678999999
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEEEeeCCCCCEEEEEECCCC
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG 430 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg 430 (490)
++|. +|+.|...|.|..||++. ..++..+..|...|++|+|-|..
T Consensus 260 ~~G~---------~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGT---------YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCce---------EEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9996 899999999999999985 45788899999999999998764
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.87 E-value=2e-20 Score=160.66 Aligned_cols=256 Identities=26% Similarity=0.421 Sum_probs=185.2
Q ss_pred eeccccccceeEEEECCCC-CEEEEEECC-------CcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEE
Q 011224 136 TILEGHTSEVCACAWSPAG-SLLASGSGD-------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 207 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D-------~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 207 (490)
.+|..|.+.|..++-+|-. +.|+|.-.| ..+.||.+...... .+...+..+..-...+-+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-------S~~~tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-------SNSSTLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-------cccchhhHhhcCCHHHhCceeeE
Confidence 3577899999999999965 566665442 24789988643211 01111111111122334579999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCcee--EEe-----cCCCCCEEEEEecC--CCCEEEEEeCCCeEEEEEccCcceeE
Q 011224 208 DWNGEGTLLATGSYDGQARIWSTNGDLK--CTL-----SKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ 278 (490)
Q Consensus 208 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~--~~~-----~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~ 278 (490)
.|.|++..+++-. |..|.+|++..... ..+ ..|....++-+|+| +++.+++. .|++++.||++++....
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN 207 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence 9999999888765 88999999764322 111 23566778889998 56666665 58999999999765321
Q ss_pred eeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCC
Q 011224 279 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~ 357 (490)
. .-..|...|..+.|+|+.+ +|+||++||.|+|||.+..
T Consensus 208 s----------------------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 208 S----------------------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred c----------------------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 1 1235777789999999875 5799999999999999754
Q ss_pred -ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC----------------------------
Q 011224 358 -KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---------------------------- 408 (490)
Q Consensus 358 -~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~---------------------------- 408 (490)
.++.++..|...+.+++|+|... -++++|+.|..|.+|....-
T Consensus 248 k~pv~el~~HsHWvW~VRfn~~hd--------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 248 KFPVQELPGHSHWVWAVRFNPEHD--------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred CccccccCCCceEEEEEEecCccc--------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 56889999999999999988653 37889999999999964321
Q ss_pred -eEEEEeeCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEEcC
Q 011224 409 -KLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLK 448 (490)
Q Consensus 409 -~~~~~~~~h~~~v~~l~~spdg~~l-~s~s~dg~i~iw~~~ 448 (490)
..+.++..|...|++++||.-..++ |+-|.||++.|=.+.
T Consensus 320 dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 320 DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 1234677899999999999877765 678999999887664
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=172.87 Aligned_cols=272 Identities=18% Similarity=0.288 Sum_probs=197.0
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
|+.-|.||.|+.....+++++.+..++-|++.+... ......+-.++..-+..+..... -.....|+.++
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~---------g~~~d~~~i~s 82 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGG---------GKGSDTLLICS 82 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCcccCCccccccccccCC---------CCCcceEEEEc
Confidence 666678999998877777665555555556543221 00000000000000111110000 01235688889
Q ss_pred CCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEE
Q 011224 221 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 300 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
.||.+.|-+..+.....+..|.++|.+-.|+|+|.-|++++.||.|++|. +++-+..++.....++.++.|.++..-+.
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceE
Confidence 99999999988888888899999999999999999999999999999998 44444444445567889999977665555
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCC
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~ 380 (490)
-+..+.+++-.+..+..+..++.|.+-|.|+.|++...++++|++|-..+|||.. |..+.+-..|.-+|++++|.|+.
T Consensus 162 ~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~- 239 (737)
T KOG1524|consen 162 FCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEK- 239 (737)
T ss_pred EecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecccc-
Confidence 5566777887787777788899999999999999999999999999999999964 55666667889999999999984
Q ss_pred CCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 381 ~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.++.+|.+ ++|+= +...+.|..++||+||.-++.|...|.+.+=.
T Consensus 240 ---------~~~v~S~n-t~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 240 ---------DYLLWSYN-TARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ---------ceeeeeee-eeeec-----------CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 45666653 44421 12346799999999999999999888776543
No 168
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=8.9e-22 Score=190.74 Aligned_cols=281 Identities=26% Similarity=0.457 Sum_probs=211.7
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
+..|.||...|+|+.|...|.++.||+.|..+|||...++.+. . ...+|++.|+.++.+.+..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-------------A----s~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-------------A----SCRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-------------c----cCCCCccccchhccchhhh
Confidence 4568899999999999999999999999999999997665432 1 2235678899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
++++++.|..|++|.+. +..+..+.+|+++|++++|+|-. +.+.||++++||.+-... .+
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~--~y------------- 306 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPR--IY------------- 306 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccccccc--cc-------------
Confidence 99999999999999976 45566889999999999999954 788999999999761100 00
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
...|.. +. -...+.++.|..++.-++||+.|+..+.|.+..-.+ +...+.-+
T Consensus 307 --------------------~prp~~-~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~ 358 (1113)
T KOG0644|consen 307 --------------------VPRPLK-FT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFV 358 (1113)
T ss_pred --------------------CCCCCC-cc-cccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEE
Confidence 000100 00 113355667777788899999999988886542211 11111111
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l-~s~s~dg~i~iw~~~~~~~ 452 (490)
.++.+.. .+.+++-.+-.+.+|++.+|..++.+.+|...+..|.++|-...+ .+++.||...|||+-.|..
T Consensus 359 t~ssd~~--------~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 359 TRSSDLS--------SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred ecccccc--------ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 1111111 145666677889999999999999999999999999999976655 5899999999999999877
Q ss_pred EEEE-ecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 453 VKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 453 ~~~~-~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
++.+ .+++.+....||+||..++..-.-|.+.++.
T Consensus 431 ik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 431 IKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred ceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence 6665 4577788999999999888777667777664
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=5.6e-20 Score=165.05 Aligned_cols=293 Identities=22% Similarity=0.327 Sum_probs=194.2
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCC---CCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN---GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
..|..|...|++|+|+|+|.+||||+.+|.|.+|....-... ......+......+..+ +|...|..++|+|+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr----~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR----GHRDDIYDLAWSPD 134 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec----ccccchhhhhccCC
Confidence 468899999999999999999999999999999987642111 00001111122233333 35788999999999
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 213 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+.++++|+.|..+++||+. +.....+..|...|..++|.|.++++++-+.|+..+.+.+........... .++
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~---~~m--- 208 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL---DIM--- 208 (434)
T ss_pred CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee---eEe---
Confidence 9999999999999999986 456678889999999999999999999999999777777655443332211 000
Q ss_pred ccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC----CCeE-----EEEecC-CCceee
Q 011224 292 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----DVTA-----KIWNMK-QDKYVH 361 (490)
Q Consensus 292 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~----dg~i-----~iwd~~-~~~~~~ 361 (490)
.+-....+.-..+.+-....++ .....++|+|+|.++++... .+.+ .+|+-+ ..+++.
T Consensus 209 ------~~~~~~~~e~~s~rLfhDeTlk------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~ 276 (434)
T KOG1009|consen 209 ------PAKAFNEREGKSTRLFHDETLK------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA 276 (434)
T ss_pred ------eecccCCCCcceeeeeecCchh------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee
Confidence 0000111100111110111111 12456889999999887642 2222 233221 123444
Q ss_pred eeccccccEEEEEEcCCCC----CC------CCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCCEEEEEECCCC
Q 011224 362 DLREHSKEIYTIRWSPTGS----GT------NNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTG 430 (490)
Q Consensus 362 ~~~~~~~~i~~v~~~p~g~----~~------~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg 430 (490)
.+.....+...++|+|--- .. ..| -.+++|.+.. ..|.+||.++..++..+ +-|-.+|++++|++||
T Consensus 277 ~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp-yrlvfaiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg 354 (434)
T KOG1009|consen 277 RLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP-YRLVFAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG 354 (434)
T ss_pred ecCCCCcceEEEEeeeeEEEeccccccccccccc-cceEEEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCC
Confidence 4555566677777776311 00 011 1235565654 57999999988887765 4488899999999999
Q ss_pred CEEEEEeCCCcEEEEEcCCCeE
Q 011224 431 EYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 431 ~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
.+|+..|.||..-+-.++.+++
T Consensus 355 ~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 355 SVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cEEEEeccCCceEEEEEcchhc
Confidence 9999999999988887776554
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=2.1e-19 Score=175.98 Aligned_cols=241 Identities=21% Similarity=0.349 Sum_probs=183.5
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCcee-------EEecCCCCCEEEEEecCCC--CEEEEEeCCCeEEEEE
Q 011224 201 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-------CTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWD 270 (490)
Q Consensus 201 ~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~-------~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd 270 (490)
...|+|++|+| +..+++.|.++|+|.+||+..... .....|..+|+.+.|..+- .-|+++|.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 46799999999 678899999999999999764322 2345699999999997654 4499999999999998
Q ss_pred ccCcce-eEe----eee-------eccCeEEEEc--cCCceEEEEcCCCeEEEEEcCCCc--------ceeEecCCCCCe
Q 011224 271 VKTEEW-KQQ----FEF-------HSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENR--------PIKTFAGHQGEV 328 (490)
Q Consensus 271 ~~~~~~-~~~----~~~-------~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~h~~~v 328 (490)
++.-.. ... ... ....+..+.| .+...|+.|+..|.|+........ ++..+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 764322 110 011 1123455555 456789999999999985543322 233556788999
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 329 NCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 329 ~~v~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
.++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||.-. .+++++..||+|.+||+..
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp--------avF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP--------AVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc--------eEEEEEcCCCceehhhhhc
Confidence 999999988665555559999999987 6667777777778899999999765 4899999999999999874
Q ss_pred C--eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 408 G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 408 ~--~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
. .++.+..-+....+.+.|+++|++|+.|...|++++|++..
T Consensus 474 ~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 474 DDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3 34455544556678889999999999999999999999864
No 171
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.8e-21 Score=191.06 Aligned_cols=249 Identities=24% Similarity=0.433 Sum_probs=191.9
Q ss_pred cceeEEEECCCCCE----EEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC-CEEE
Q 011224 143 SEVCACAWSPAGSL----LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLA 217 (490)
Q Consensus 143 ~~V~~~~~sp~~~~----l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~ 217 (490)
..-+.++|.+.|.. ||.|..||.|.+|+...-.. +... ....+...|.++|..+.|++.. ++|+
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----~~~~------~~la~~~~h~G~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----NASE------EVLATKSKHTGPVLGLDFNPFQGNLLA 133 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc-----Ccch------HHHhhhcccCCceeeeeccccCCceee
Confidence 34678999997754 88999999999999754210 1000 1223445678999999999965 5999
Q ss_pred EEeCCCeEEEEECCCceeE-Ee--cCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 218 TGSYDGQARIWSTNGDLKC-TL--SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 218 sg~~dg~i~iw~~~~~~~~-~~--~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+|+.||.|.|||++..... .. ..-.+.|.+|+|+..- +.|++++.+|++.|||++..+.+-.
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~-------------- 199 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK-------------- 199 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc--------------
Confidence 9999999999998752211 11 2245689999998754 5688999999999999987643221
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCC--CCeeEEEEcCCC-CEEEEEeCCC---eEEEEecCCC-ceeeeeccc
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--GEVNCVKWDPTG-SLLASCSDDV---TAKIWNMKQD-KYVHDLREH 366 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~-~~l~s~~~dg---~i~iwd~~~~-~~~~~~~~~ 366 (490)
+..|. ..+..++|||+. ..|++++.|. .|.+||++.- ..++.++.|
T Consensus 200 ---------------------------ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 200 ---------------------------LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred ---------------------------cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 21121 246789999987 3466666654 5899998754 457778899
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC-EEEEEeCCCcEEEE
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIW 445 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iw 445 (490)
...|.++.|++... .+|+|++.|+.|.+|+..+++.+..+.....++..+.|.|... .+++++.||.|-||
T Consensus 253 ~~GilslsWc~~D~--------~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDP--------RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred ccceeeeccCCCCc--------hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 99999999999874 3889999999999999999999999998888999999999876 78889999999999
Q ss_pred EcCCCe
Q 011224 446 SLKEGK 451 (490)
Q Consensus 446 ~~~~~~ 451 (490)
.+..+.
T Consensus 325 sl~~~~ 330 (1049)
T KOG0307|consen 325 SLQGTD 330 (1049)
T ss_pred eeecCC
Confidence 997654
No 172
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.6e-18 Score=167.65 Aligned_cols=280 Identities=21% Similarity=0.351 Sum_probs=197.4
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 273 (490)
.|...++|.++||.++++++|..||.|.+|.--+ .....+.-|..+|.+++|+++|.+|+||+..+.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 3556689999999999999999999999997433 23456778999999999999999999999999999999999
Q ss_pred cceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcc---eeEec--------CCCCCeeEEEEcCCCCEEE
Q 011224 274 EEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRP---IKTFA--------GHQGEVNCVKWDPTGSLLA 341 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~---~~~~~--------~h~~~v~~v~~~~~~~~l~ 341 (490)
++ .+-+..-.+++..+.+.+ ...++....|+.|.+........ +..+. +..+-.+.++++|--+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 88 555556667788777754 45566777888888876543221 11111 1234567889999777788
Q ss_pred EEeCCCeEEEEecCCCceeeeecc-----c------cccEEEEEEcCCCCCCCCCCCcEEEEEEE--------CC--CcE
Q 011224 342 SCSDDVTAKIWNMKQDKYVHDLRE-----H------SKEIYTIRWSPTGSGTNNPNQQLILASAS--------FD--STV 400 (490)
Q Consensus 342 s~~~dg~i~iwd~~~~~~~~~~~~-----~------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs--------~d--g~i 400 (490)
-.+..|.|.+||+-+...+..++. + .-.+++++.+..|. +++|+- .| -.+
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs---------~maT~E~~~d~~~~~~~e~~L 432 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS---------WMATLEARIDKFNFFDGEVSL 432 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce---------EEEEeeeeehhhhccCceEEE
Confidence 899999999999988776655432 1 12345555554443 444432 22 357
Q ss_pred EEEeCCCCeEEEE-----eeCCCCCEEEEEECC-CCC-EEEEEeCCCcEEEEEcC------CCeEEEEE-----ecCCCE
Q 011224 401 KLWDVELGKLLYS-----LNGHREPVYSLAFSP-TGE-YLASGSLDKSMHIWSLK------EGKIVKTY-----TGNGGI 462 (490)
Q Consensus 401 ~iwd~~~~~~~~~-----~~~h~~~v~~l~~sp-dg~-~l~s~s~dg~i~iw~~~------~~~~~~~~-----~~~~~v 462 (490)
|+|-......-+. ...|...+...+|.+ ... .++++|.||.++||-+. .+....++ .++..+
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i 512 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI 512 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence 8897654333222 346877666655543 333 89999999999999983 22211111 235678
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 463 FEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 463 ~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+++|+.||..||.+. +++|.+||.+
T Consensus 513 ~a~~fs~dGslla~s~-~~~Itiwd~~ 538 (792)
T KOG1963|consen 513 TALCFSQDGSLLAVSF-DDTITIWDYD 538 (792)
T ss_pred cchhhcCCCcEEEEec-CCEEEEecCC
Confidence 9999999997666555 5689999975
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=2.1e-19 Score=156.81 Aligned_cols=237 Identities=20% Similarity=0.343 Sum_probs=172.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeE-------Eec-------CCCCCEEEEEec-------CCCCEEEEEeC
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-------TLS-------KHKGPIFSLKWN-------KKGDYLLTGSC 262 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-------~~~-------~h~~~V~~l~~~-------~~~~~l~s~s~ 262 (490)
...+.|||||..|++-+.|..+++|++...... .+. .....|+.-+|- |+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 345789999999999999999999986432110 011 122345555553 55667777777
Q ss_pred CCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCC---CeeEEEEcCCCCE
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG---EVNCVKWDPTGSL 339 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~ 339 (490)
+.-|.+||.-+++....+.. ..|.. ...+++|+|||..
T Consensus 132 ~~PIh~wdaftG~lraSy~~---------------------------------------ydh~de~taAhsL~Fs~DGeq 172 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRA---------------------------------------YDHQDEYTAAHSLQFSPDGEQ 172 (406)
T ss_pred cCceeeeeccccccccchhh---------------------------------------hhhHHhhhhheeEEecCCCCe
Confidence 77778887777665443321 01222 2358999999999
Q ss_pred EEEEeCCCeEEEEec-CCCce--eeeecc-----ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE
Q 011224 340 LASCSDDVTAKIWNM-KQDKY--VHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 411 (490)
Q Consensus 340 l~s~~~dg~i~iwd~-~~~~~--~~~~~~-----~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 411 (490)
|++| ....|++||+ +.++. +..... ..+-+.+++|+|.... .++.|+.-..+-|+.-..+.++
T Consensus 173 lfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~--------~~a~gsY~q~~giy~~~~~~pl 243 (406)
T KOG2919|consen 173 LFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK--------TLAVGSYGQRVGIYNDDGRRPL 243 (406)
T ss_pred Eeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc--------ceeeecccceeeeEecCCCCce
Confidence 9766 5679999998 55542 222222 2456788899987652 6899999999999998889999
Q ss_pred EEeeCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCe-EEEEEec-----CCCEEEEEECCCCCEEEEEECCCcEE
Q 011224 412 YSLNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGK-IVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVC 484 (490)
Q Consensus 412 ~~~~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iw~~~~~~-~~~~~~~-----~~~v~~~~~~~~g~~la~~~~d~~v~ 484 (490)
+.+.+|.+.|+.|.|.++|+.|.+|+. |-.|..||++.-+ .+..+.. +..| -+...|+|++||+|+.+|.|+
T Consensus 244 ~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 244 QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCccEE
Confidence 999999999999999999999999875 7789999998643 2333322 3333 356689999999999999999
Q ss_pred EEEee
Q 011224 485 VLDFR 489 (490)
Q Consensus 485 v~~~~ 489 (490)
|||++
T Consensus 323 vwdlk 327 (406)
T KOG2919|consen 323 VWDLK 327 (406)
T ss_pred EEecC
Confidence 99986
No 174
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-18 Score=144.27 Aligned_cols=267 Identities=19% Similarity=0.288 Sum_probs=185.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC----------c-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNG----------D-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~----------~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 272 (490)
|..-+|+|.+++|+.|..+|+|.+..+.. + .....++|.++|+.++|+. ..|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeeh
Confidence 56668999999999999999999997531 1 2335689999999999983 4566665 6999998764
Q ss_pred Ccce----e----Eeeeeec-----cCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC
Q 011224 273 TEEW----K----QQFEFHS-----GPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 338 (490)
Q Consensus 273 ~~~~----~----~~~~~~~-----~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 338 (490)
.... . .....+. ..++++-.. ....++.++.|+.++-||+.+++..++|+||+..|.++.-.....
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 3321 1 1112222 123333222 234455566999999999999999999999999999999855556
Q ss_pred EEEEEeCCCeEEEEecCCCceeeeecccc----------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC
Q 011224 339 LLASCSDDVTAKIWNMKQDKYVHDLREHS----------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 408 (490)
Q Consensus 339 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 408 (490)
.+++|++||++||||.++++.+..+.... ..|.+++-+.+ .|+. +..-.+.+|+++..
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-----------WlvC-GgGp~lslwhLrss 237 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-----------WLVC-GGGPKLSLWHLRSS 237 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-----------eEEe-cCCCceeEEeccCC
Confidence 68899999999999999999887664322 23445543322 4444 44568999999988
Q ss_pred eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCCEEE-EEECCCcEEEE
Q 011224 409 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIA-ACFANHTVCVL 486 (490)
Q Consensus 409 ~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~la-~~~~d~~v~v~ 486 (490)
++...+. -..+|..+.|-.| .+++++..+.|.-|.+. |.+-...+. ....++.+|+..--.++ +++....+.|+
T Consensus 238 e~t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 238 ESTCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred CceEEEe-cccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 7766654 3456888888654 67778878889999874 444444433 44578888877654443 44445556665
Q ss_pred -Eee
Q 011224 487 -DFR 489 (490)
Q Consensus 487 -~~~ 489 (490)
|||
T Consensus 314 ~~~~ 317 (325)
T KOG0649|consen 314 KDFR 317 (325)
T ss_pred eccc
Confidence 554
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=5.1e-18 Score=161.18 Aligned_cols=219 Identities=19% Similarity=0.309 Sum_probs=154.9
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeee-------------------
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK------------------- 194 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~------------------- 194 (490)
...+|+||++.|+|++|+.||+++|||+.|..|.+|.-.-....+......+.-..+..+.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK 124 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK 124 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence 4568999999999999999999999999999999998543222221111111111110000
Q ss_pred -cccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEec---CCCCCEEEEEecCCC-----CEEEEEeCCCe
Q 011224 195 -GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKG-----DYLLTGSCDKT 265 (490)
Q Consensus 195 -~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~---~h~~~V~~l~~~~~~-----~~l~s~s~D~~ 265 (490)
-.....+..|.+++|..||++|+.|-.+|+|.|-+..++....+. +...+|++++|+|.. ..+++.....+
T Consensus 125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 000123456889999999999999999999999998776655554 467899999999964 46788888888
Q ss_pred EEEEEccCcceeEeeeeeccCeEEEEc-cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe
Q 011224 266 AIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 344 (490)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 344 (490)
+.+|.+... .+..-..-.-...++.+ .+...+..++.|+.+.++.. .+..+.++......|+.++.+|++++++.|+
T Consensus 205 LSFy~LsG~-~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 205 LSFYQLSGK-QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred eEEEEecce-eecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEE
Confidence 888887543 22211111122345544 45566678888888887754 3444555555667899999999999999999
Q ss_pred CCCeEEEEec
Q 011224 345 DDVTAKIWNM 354 (490)
Q Consensus 345 ~dg~i~iwd~ 354 (490)
.||+|-.|++
T Consensus 283 qDGTiACyNl 292 (1081)
T KOG1538|consen 283 QDGTIACYNL 292 (1081)
T ss_pred ccCeeehhhh
Confidence 9999999976
No 176
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=7.3e-20 Score=155.37 Aligned_cols=245 Identities=17% Similarity=0.258 Sum_probs=181.3
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee-eeccCeEEEEccCCceEEEEcCCCeEEEEEc
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 312 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 312 (490)
....+..|.+.|+++.|..++ +|++|..-|.|++|++.++.-...++ .+...+..+...++..+.+-+.|..+..|++
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI 84 (323)
T ss_pred CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence 345667899999999998765 59999999999999999988777777 4555666666666677777788888888877
Q ss_pred CCCccee---------------------------Ee--------------------------cCCCCCeeEEEEcCC-CC
Q 011224 313 GENRPIK---------------------------TF--------------------------AGHQGEVNCVKWDPT-GS 338 (490)
Q Consensus 313 ~~~~~~~---------------------------~~--------------------------~~h~~~v~~v~~~~~-~~ 338 (490)
....-+. .+ .+..+.+.|..+..+ +.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 5421110 00 012344566664322 22
Q ss_pred --EEEEEeCCCeEEEEecCCC----------ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC
Q 011224 339 --LLASCSDDVTAKIWNMKQD----------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406 (490)
Q Consensus 339 --~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 406 (490)
+++.|.++|.+.+||+.++ +.+.....|..++.++.|.+... -=++|+.+..+..|++.
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~---------rGisgga~dkl~~~Sl~ 235 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD---------RGISGGADDKLVMYSLN 235 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc---------CCcCCCccccceeeeec
Confidence 4678889999999999987 33334456788999998876533 12467777788888875
Q ss_pred CC--eE--EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCCEEEEEECCC
Q 011224 407 LG--KL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 407 ~~--~~--~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
.. .+ ..++.-..-.|..+..-||++.+||+|+|++|+||+.++...+..+.- ..+|++++|+|+...+|+|+.|+
T Consensus 236 ~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 236 HSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDA 315 (323)
T ss_pred cccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCc
Confidence 32 21 122222334688999999999999999999999999999988877754 46799999999999999999999
Q ss_pred cEEEEEe
Q 011224 482 TVCVLDF 488 (490)
Q Consensus 482 ~v~v~~~ 488 (490)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=8e-19 Score=150.91 Aligned_cols=258 Identities=21% Similarity=0.384 Sum_probs=190.0
Q ss_pred CCeEEEEECCCc----eeEEecCCCCCEEEEEecCCCCE-EEEEeCC-------CeEEEEEccCc---------ceeEee
Q 011224 222 DGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD-------KTAIVWDVKTE---------EWKQQF 280 (490)
Q Consensus 222 dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D-------~~v~iwd~~~~---------~~~~~~ 280 (490)
|+.|.+-+.+.+ ....|..|.+.|+.|+-+|-... |+++..+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 577777664422 22357778999999999997655 4555442 24679987532 122223
Q ss_pred e-eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcc-eeEe-----cCCCCCeeEEEEcC--CCCEEEEEeCCCeEEE
Q 011224 281 E-FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTF-----AGHQGEVNCVKWDP--TGSLLASCSDDVTAKI 351 (490)
Q Consensus 281 ~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~-----~~h~~~v~~v~~~~--~~~~l~s~~~dg~i~i 351 (490)
. .+.+.+.++.|.++..-+.+-.++.|.+|++..... +..+ .+|....++-+|+| +|+.+++. .|++++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 2 334577899998777666677799999999987665 2222 24566788999998 67777765 5789999
Q ss_pred EecCCCceeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEEEeeCCCCCEEEEEECCC
Q 011224 352 WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 352 wd~~~~~~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spd 429 (490)
||+++.+....+. +|...+..+.|+|+- +.+|++|+.||.|+|||++. ..+++++.+|...|+++.|+|.
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk--------q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK--------QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCc--------eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence 9999988766654 677888999887765 47999999999999999985 4578999999999999999996
Q ss_pred -CCEEEEEeCCCcEEEEEcCCCe-----------------------------EEEEEec-CCCEEEEEECCCCC-EEEEE
Q 011224 430 -GEYLASGSLDKSMHIWSLKEGK-----------------------------IVKTYTG-NGGIFEVCWNKEGD-KIAAC 477 (490)
Q Consensus 430 -g~~l~s~s~dg~i~iw~~~~~~-----------------------------~~~~~~~-~~~v~~~~~~~~g~-~la~~ 477 (490)
.++|.+||.|..|.+|....-. ++.+|.. ...|++++||.-.- ++|+-
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 4788999999999999643110 1223433 34699999998776 55667
Q ss_pred ECCCcEEEEEe
Q 011224 478 FANHTVCVLDF 488 (490)
Q Consensus 478 ~~d~~v~v~~~ 488 (490)
+.||.|.|-.+
T Consensus 350 SYDGRviIs~V 360 (370)
T KOG1007|consen 350 SYDGRVIISSV 360 (370)
T ss_pred ccCceEEeecC
Confidence 89999887654
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=171.15 Aligned_cols=329 Identities=19% Similarity=0.254 Sum_probs=219.8
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
.|+-.++|.++||.++++|+|-.||.|.+|.=... .... +.. ....-|...|.+++|+++|.+|+||
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-~~~~--------~t~----t~lHWH~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-SDDS--------ETC----TLLHWHHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccc-cccc--------ccc----eEEEecccccceeEEecCCceEeec
Confidence 47778999999999999999999999999963210 0000 000 1112356789999999999999999
Q ss_pred eCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC-----------eE
Q 011224 220 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----------TL 288 (490)
Q Consensus 220 ~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-----------~~ 288 (490)
|..+.+-+|.........+..-.++|..+.++|++.+.+....|..|.+-...+.+....+.+...+ ..
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 9999999999887777778888999999999999999999999999999877665544333222111 22
Q ss_pred EEEccC-CceEEEEcCCCeEEEEEcCCCcceeEec-----CC------CCCeeEEEEcCCCCEEEEEe--------CCC-
Q 011224 289 DVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-----GH------QGEVNCVKWDPTGSLLASCS--------DDV- 347 (490)
Q Consensus 289 ~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h------~~~v~~v~~~~~~~~l~s~~--------~dg- 347 (490)
.+...+ ...++..+..+.|.+|++-+...+..+. .+ .-.+++++.+..|.+++|.- .||
T Consensus 350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 222322 3455667778889999887776654442 12 23467888888899998863 343
Q ss_pred -eEEEEecCCCce----eeee-ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC------Ce----EE
Q 011224 348 -TAKIWNMKQDKY----VHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL------GK----LL 411 (490)
Q Consensus 348 -~i~iwd~~~~~~----~~~~-~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~------~~----~~ 411 (490)
.+++|-...... ...+ ..|...+...++.+..+. ...++++.||.++||-+.. .. +.
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs-------~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~ 502 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRS-------VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCK 502 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCccc-------ceeEEeccCCeEEEEEEecccccCcCccceEEe
Confidence 467886543322 1122 345555555555544331 2578999999999998732 21 22
Q ss_pred EEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEEEEec-CCCEEEEEECCCC--CEEEEEECCCcEEEEE
Q 011224 412 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTG-NGGIFEVCWNKEG--DKIAACFANHTVCVLD 487 (490)
Q Consensus 412 ~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~-~~~~~~~~~-~~~v~~~~~~~~g--~~la~~~~d~~v~v~~ 487 (490)
..-.-|..++++++||.||..| +.|.|++|.+||..+ ..+..+... +..+..+++.... +..+.......+.+||
T Consensus 503 ~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WN 581 (792)
T KOG1963|consen 503 AIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWN 581 (792)
T ss_pred eeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHh
Confidence 2212378899999999999655 456788999999988 444433322 2223334443321 2233334456677887
Q ss_pred ee
Q 011224 488 FR 489 (490)
Q Consensus 488 ~~ 489 (490)
+.
T Consensus 582 ll 583 (792)
T KOG1963|consen 582 LL 583 (792)
T ss_pred hh
Confidence 63
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=6.4e-20 Score=171.24 Aligned_cols=246 Identities=22% Similarity=0.333 Sum_probs=181.7
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---------ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEE
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~---------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iw 269 (490)
.|...|+.++|++....|++++.||++++|+++. ..+.+|.+|.++|.|+++.+++.++++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 3567799999999999999999999999999831 3567899999999999999999999999999999999
Q ss_pred EccCc----------ceeEeeeeeccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecCC--CCCeeEEEEcCC
Q 011224 270 DVKTE----------EWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPT 336 (490)
Q Consensus 270 d~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h--~~~v~~v~~~~~ 336 (490)
++... .....+.+|.+.+..+.++ ....+++++.||+++.|......+ .+|..- .+.-.++++-..
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 65421 2345677888888887775 456688999999999999887776 333322 233445555432
Q ss_pred CCE-EEEEeCCCeEEEEecCCCceeeeecc-------ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC
Q 011224 337 GSL-LASCSDDVTAKIWNMKQDKYVHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 408 (490)
Q Consensus 337 ~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 408 (490)
... .++...-+.--++++.....+..+.. ....+..+.+.|... +.+++..|+.|+++|..++
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~---------~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD---------ITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC---------eeEecccCCceeccccccc
Confidence 211 12222222222333333322222211 112355566666654 7789999999999999999
Q ss_pred eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 409 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 409 ~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
+.++....|...++++++.|+|.+|++|+.||.|++|.+....++.
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 9999999999999999999999999999999999999987544443
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=8.1e-19 Score=156.99 Aligned_cols=209 Identities=20% Similarity=0.457 Sum_probs=170.0
Q ss_pred EecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCC
Q 011224 237 TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 315 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 315 (490)
.+.+|+++|..++|+|-+ +.|+|||.|.+|+||.+..+.+... ..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------------------------------lt 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------------------------------LT 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC----------------------------------cc
Confidence 567999999999999965 5689999999999999865432211 12
Q ss_pred cceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
.|+..+.||+..|--++|||.- +.|++++.|.+|.||++.++..+.++. |...|+++.|+.+|+ +|++.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs---------~l~Tt 191 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGS---------LLCTT 191 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCc---------eeeee
Confidence 5677889999999999999975 578899999999999999999888877 999999999999997 89999
Q ss_pred ECCCcEEEEeCCCCeEEEEeeCCCCC-EEEEEECCCCCEEEEE---eCCCcEEEEEcCCCe---EEEEEecCCCEEEEEE
Q 011224 395 SFDSTVKLWDVELGKLLYSLNGHREP-VYSLAFSPTGEYLASG---SLDKSMHIWSLKEGK---IVKTYTGNGGIFEVCW 467 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~spdg~~l~s~---s~dg~i~iw~~~~~~---~~~~~~~~~~v~~~~~ 467 (490)
+.|..|||||.++++.+.+-.+|.+. -..+.|-.+|.++-|| ..+.++-+|+..+-. .+..+....+|.-.=|
T Consensus 192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFy 271 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFY 271 (472)
T ss_pred cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeee
Confidence 99999999999999999988888753 3456788888844444 246789999976533 3556666667777779
Q ss_pred CCCCCEEEEE-ECCCcEEEEEee
Q 011224 468 NKEGDKIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 468 ~~~g~~la~~-~~d~~v~v~~~~ 489 (490)
.||.+.+..| -.|+.|+.|.+.
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEec
Confidence 9999877655 568999998763
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.5e-19 Score=156.67 Aligned_cols=267 Identities=20% Similarity=0.375 Sum_probs=187.8
Q ss_pred cccceeEEEECCC----CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC-CE
Q 011224 141 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TL 215 (490)
Q Consensus 141 H~~~V~~~~~sp~----~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~ 215 (490)
|.-.-+.|+|+-+ ..+||.||.-|.|+|-|+.++. +.+.+.+|...|..+.|+|+. ++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~-----------------~~~~~~ghG~sINeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-----------------CSKNYRGHGGSINEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh-----------------hccceeccCccchhhhcCCCCCcE
Confidence 5666778888764 3488999999999999987654 234455678889999999964 79
Q ss_pred EEEEeCCCeEEEEECCCce-eEEe---cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 216 LATGSYDGQARIWSTNGDL-KCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~~-~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+++|+.|..||+|+++... +..+ .+|.+.|.++.|++++.+|+||+.|.++++|++...+....++.. +.
T Consensus 151 vls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------~~ 224 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS------IT 224 (385)
T ss_pred EEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh------cc
Confidence 9999999999999988654 3333 579999999999999999999999999999999866544333221 11
Q ss_pred ccCCceEEEEcCCCeEEEE-EcCCCccee-EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEec-CCCce---------
Q 011224 292 WRNNVSFATSSTDNMIYVC-KIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKY--------- 359 (490)
Q Consensus 292 ~~~~~~~~~~~~d~~i~~~-~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~-~~~~~--------- 359 (490)
|.++ ++.+-+ ......|.. +-.-|..+|.|+.|- |.++++=|-++.|..|.. +-+..
T Consensus 225 ~~~~---------~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 225 YSPN---------KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred cCCC---------CccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCcc
Confidence 1111 000000 000001111 223588999999996 689999999999999976 21111
Q ss_pred ----eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE--EEeeC--CCCCEEEEEECCCCC
Q 011224 360 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNG--HREPVYSLAFSPTGE 431 (490)
Q Consensus 360 ----~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~--h~~~v~~l~~spdg~ 431 (490)
+.++......++-+.|+-+-. +.+||.|...|.|.+||+++..+. .++.. ....|...+||.||.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHH-------HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 222333344455555543322 126889999999999999876652 22221 235689999999999
Q ss_pred EEEEEeCCCcEEEEEcC
Q 011224 432 YLASGSLDKSMHIWSLK 448 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~ 448 (490)
+|+....|++|.-||..
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999864
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=4.2e-18 Score=169.55 Aligned_cols=281 Identities=22% Similarity=0.358 Sum_probs=197.6
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC--CCCEEEEEe
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLATGS 220 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~~~l~sg~ 220 (490)
..-..+.|+|-...++++...-.|++||.+.++...+..++. .....|+.+.+-. |..++++|+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--------------~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--------------FPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--------------CCCCccceeeeecccchhheeeec
Confidence 345667899999999999878899999998876544333221 2235688888765 567899999
Q ss_pred CCCeEEEEECCC------ceeEEe---cC----CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 221 YDGQARIWSTNG------DLKCTL---SK----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 221 ~dg~i~iw~~~~------~~~~~~---~~----h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
.||.||||+-.. +.+... .+ -.+.-.-+.|.....+|++++.-+.|+|||.....+...+..
T Consensus 1131 ~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~----- 1205 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY----- 1205 (1387)
T ss_pred cCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-----
Confidence 999999997321 112111 11 111113456777666777666677888888766544332211
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEc-CCCCEEEEEeCCCeEEEEecCCC---ceeeee
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQD---KYVHDL 363 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~ 363 (490)
+....|+++.-+ +.|+.|+.|-.||.||+||.+.. ..+...
T Consensus 1206 -----------------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1206 -----------------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred -----------------------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 112234444332 23789999999999999998753 346667
Q ss_pred cccccc--EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE--EEEeeCCC--C-CEEEEEECCCCCEEEEE
Q 011224 364 REHSKE--IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHR--E-PVYSLAFSPTGEYLASG 436 (490)
Q Consensus 364 ~~~~~~--i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~h~--~-~v~~l~~spdg~~l~s~ 436 (490)
+.|... |..+.+.+.|-. -|++|+.||.|++||++.... ..++..|. + ..+++..+++...+|+|
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~--------elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLG--------ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred cccCCcccceeEEeecCCCc--------ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeec
Confidence 788777 899999887753 389999999999999997422 22344443 3 48999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEEec--------CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 437 SLDKSMHIWSLKEGKIVKTYTG--------NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 437 s~dg~i~iw~~~~~~~~~~~~~--------~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+. +.|+||++... .+..+.. .+.+.+++|||---+||+|+.|.+|+||.
T Consensus 1323 s~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred Cc-ceEEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 98 99999998643 3333211 34578999999999999999999999995
No 183
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=1.1e-16 Score=153.20 Aligned_cols=270 Identities=14% Similarity=0.225 Sum_probs=171.8
Q ss_pred EEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEECCCc-ee
Q 011224 158 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNGD-LK 235 (490)
Q Consensus 158 ~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~-~dg~i~iw~~~~~-~~ 235 (490)
++.+.|+.|.+|++.+... + ..++.+. .......++++|++++|++++ .++.|.+|+.... ..
T Consensus 6 ~~~~~~~~I~~~~~~~~g~--------l--~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA--------L--TLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred EEcCCCCCEEEEEECCCCc--------e--eeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce
Confidence 3446789999999853211 1 1111111 123466789999999987765 4788999987532 11
Q ss_pred EEe--cCCCCCEEEEEecCCCCEEEEEeC-CCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEc
Q 011224 236 CTL--SKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 312 (490)
Q Consensus 236 ~~~--~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 312 (490)
... ....+....+.|+|++++|++++. ++.|.+|++.+......
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~--------------------------------- 117 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA--------------------------------- 117 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC---------------------------------
Confidence 111 113335678999999999887764 78999998853211000
Q ss_pred CCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeee-----ec-cccccEEEEEEcCCCCCCCCC
Q 011224 313 GENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHD-----LR-EHSKEIYTIRWSPTGSGTNNP 385 (490)
Q Consensus 313 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~i~~v~~~p~g~~~~~~ 385 (490)
.+..+.+ .....+++++|++++++ +...++.|.+||+.+...+.. .. ........+.|+|++.
T Consensus 118 ----~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~----- 187 (330)
T PRK11028 118 ----PIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ----- 187 (330)
T ss_pred ----ceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC-----
Confidence 0011111 12345688999998875 555679999999976432211 11 1123456789999886
Q ss_pred CCcEEEEEEE-CCCcEEEEeCCC--C--eEEEEeeCC------CCCEEEEEECCCCCEEEEEe-CCCcEEEEEcCCC---
Q 011224 386 NQQLILASAS-FDSTVKLWDVEL--G--KLLYSLNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEG--- 450 (490)
Q Consensus 386 ~~~~~l~sgs-~dg~i~iwd~~~--~--~~~~~~~~h------~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~~--- 450 (490)
+|+++. .++.|.+|++.. + +.+..+..+ ......+.|+|+|++|+++. .++.|.+|++...
T Consensus 188 ----~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 188 ----YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred ----EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 454444 489999999973 3 233333321 11234689999999998875 4789999998542
Q ss_pred -eEEEEEecCCCEEEEEECCCCCEEEEEEC-CCcEEEEEee
Q 011224 451 -KIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 489 (490)
Q Consensus 451 -~~~~~~~~~~~v~~~~~~~~g~~la~~~~-d~~v~v~~~~ 489 (490)
+++...........++|+|+|++|+++.. +++|.||.+.
T Consensus 264 ~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 264 LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 23333333334568899999999987765 8899999763
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=5.7e-18 Score=147.85 Aligned_cols=231 Identities=24% Similarity=0.405 Sum_probs=179.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc----eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEc-cCcc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEE 275 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~-~~~~ 275 (490)
..+|+|.+|++|+..++.+-.+..|.||...+. ...++..|...|++|.|+|..+.|++|+.|+.-.+|.. ..++
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 367999999999999999999999999987653 45688899999999999999999999999999999987 4444
Q ss_pred eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 276 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
|.. ...+..+...++||.|+|.++.||+||.-..|.||-+.
T Consensus 90 Wkp---------------------------------------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 90 WKP---------------------------------------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE 130 (361)
T ss_pred ecc---------------------------------------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence 433 33444567889999999999999999999999999775
Q ss_pred CCce--e--eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC------------------CCeEEEE
Q 011224 356 QDKY--V--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------------LGKLLYS 413 (490)
Q Consensus 356 ~~~~--~--~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~------------------~~~~~~~ 413 (490)
...- + +.-+.+...|.++.|+|++. +|+.||.|+..|+|..- -|.++.+
T Consensus 131 ~ENdWWVsKhikkPirStv~sldWhpnnV---------LlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 131 QENDWWVSKHIKKPIRSTVTSLDWHPNNV---------LLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred cccceehhhhhCCccccceeeeeccCCcc---------eecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 4321 1 11234567899999999875 89999999999999642 1233344
Q ss_pred eeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-EEEEE-ecCCCEEEEEECCCCCEEEEEEC
Q 011224 414 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-IVKTY-TGNGGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 414 ~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~-~~~~~-~~~~~v~~~~~~~~g~~la~~~~ 479 (490)
+....+.|..+.|+|+|..|+-.+.|.+|.+=|..... .+.+. ...-+..++.|-.+...+++|..
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 44456789999999999999999999999999876553 23332 22345677788776655555543
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=3.7e-18 Score=158.35 Aligned_cols=263 Identities=18% Similarity=0.310 Sum_probs=188.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEE-e-------cCCCCEEEEEeCCCeEEEEE
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-W-------NKKGDYLLTGSCDKTAIVWD 270 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~-~-------~~~~~~l~s~s~D~~v~iwd 270 (490)
.++.-|.|+.|+.....+.+++.+..+.-|+........+......|...- . -.....|+.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 345567899999887777666555444445544322211111111111100 0 11235789999999999887
Q ss_pred ccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeE
Q 011224 271 VKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 349 (490)
+.+...+....|.+.+.+..|.. ...+++++.||.|.+|.... ....++.....+|.|++|.|+.+-++-|-. +.+
T Consensus 92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~ 168 (737)
T KOG1524|consen 92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHI 168 (737)
T ss_pred -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhcCceeEEEEECCCCCceEEecC-CeE
Confidence 56666777888999999999965 56788999999999998643 222334445678999999999887766543 456
Q ss_pred EEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCC
Q 011224 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 350 ~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 429 (490)
.|=-+....-+-..++|.+-|.++.|+|... ++++|+.|-..++||.. |..++.-..|.-+|++++|.|+
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~---------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSN---------IIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCcccc---------ceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc
Confidence 6655555555566789999999999999875 89999999999999975 7888888889999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 430 GEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 430 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
..++.+|.. ++++= -+.-+.|+.++|||||..++.|...|.+.+-
T Consensus 239 -~~~~v~S~n-t~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 239 -KDYLLWSYN-TARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred -cceeeeeee-eeeec----------CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 666666643 33311 1223569999999999999999999987653
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=7.5e-18 Score=148.34 Aligned_cols=265 Identities=15% Similarity=0.241 Sum_probs=186.0
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecC--CCCEEEEEeCCCeEEEEEccCcceeEeeee--ec-cCe
Q 011224 214 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-GPT 287 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~-~~~ 287 (490)
..++++..+|.|++||... .....+.+|...+..++|.. ..+.+++|+.||+|++||+++...+..+.. +. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688889999999999764 55668889999999999976 567899999999999999998765544433 33 234
Q ss_pred EEEEcc-CCceEEEE----cCCCeEEEEEcCCCcc-eeEe-cCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCc-
Q 011224 288 LDVDWR-NNVSFATS----STDNMIYVCKIGENRP-IKTF-AGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDK- 358 (490)
Q Consensus 288 ~~~~~~-~~~~~~~~----~~d~~i~~~~~~~~~~-~~~~-~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~- 358 (490)
.+++.. +...++.+ ..+..+.+||++..+. +..+ ..|...|+++.|+|.. ++|+|||.||.|.|||++...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 555554 33344443 2467899999998765 5544 4799999999999965 689999999999999987542
Q ss_pred --eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC-------------CCCEEE
Q 011224 359 --YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-------------REPVYS 423 (490)
Q Consensus 359 --~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~ 423 (490)
.+.....+...|.++.|...+-. -+.+-++..+..+|++..+.+...+..- .--|..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~yk--------rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~ 272 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYK--------RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE 272 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcc--------eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec
Confidence 23333456778999999877631 3667788999999999887754433211 001121
Q ss_pred EEECCCCCEEEEEeC-CCcEEEEEcC---CCeE---EEEEecCC--CEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 424 LAFSPTGEYLASGSL-DKSMHIWSLK---EGKI---VKTYTGNG--GIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 424 l~~spdg~~l~s~s~-dg~i~iw~~~---~~~~---~~~~~~~~--~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
....++..++.++. -+...++-+. .+.. +..+.+.. -|.++.|...+..+.+|+.||.+.+|-
T Consensus 273 -~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 273 -HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred -ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 11234455555554 4555555443 2332 33334322 367888999999999999999999996
No 187
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=2.7e-17 Score=141.74 Aligned_cols=271 Identities=21% Similarity=0.376 Sum_probs=192.8
Q ss_pred CCeEEEEEcC---CCCEEEEEeC----CCeEEEEECC---CceeE-EecCCCCCEEEEEecCCCC----EEEEEeCCCeE
Q 011224 202 KDVTTLDWNG---EGTLLATGSY----DGQARIWSTN---GDLKC-TLSKHKGPIFSLKWNKKGD----YLLTGSCDKTA 266 (490)
Q Consensus 202 ~~V~~~~~s~---~~~~l~sg~~----dg~i~iw~~~---~~~~~-~~~~h~~~V~~l~~~~~~~----~l~s~s~D~~v 266 (490)
.++.++.||. ..-+|+.|+. .+.|.|-.+. ++.+. .-..|.-+++.+-|.|+.. .|++.+ +-.+
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~D~L 123 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-SDFL 123 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-cCeE
Confidence 4577888883 3456777775 3566666543 22221 1136889999999999863 233333 3489
Q ss_pred EEEEccCcc--eeE--ee-----eeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcc---eeEecCCCCCeeEEE
Q 011224 267 IVWDVKTEE--WKQ--QF-----EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVK 332 (490)
Q Consensus 267 ~iwd~~~~~--~~~--~~-----~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~v~~v~ 332 (490)
|+|.+...+ ... .+ ..+..|..+++|. +...+.+++-|.+-.+|++..+.. -..+-.|..+|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 999876322 111 11 1234577888885 467788999999999999988643 445778999999999
Q ss_pred EcCCC-CEEEEEeCCCeEEEEecCCCcee---eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-CcEEEEeCCC
Q 011224 333 WDPTG-SLLASCSDDVTAKIWNMKQDKYV---HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVEL 407 (490)
Q Consensus 333 ~~~~~-~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-g~i~iwd~~~ 407 (490)
|...+ ..||+.|.||.+|+||++...-- .+-.....+...++|++... +++|+-..| ..|.|.|++.
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp--------nymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP--------NYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc--------hHHhhhhcCCceEEEEEecC
Confidence 99865 57899999999999999865432 22122245667778876543 467776555 4689999986
Q ss_pred C-eEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCe------EEEEEecCCCEEEEEECC-CCCEEEEEE
Q 011224 408 G-KLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGK------IVKTYTGNGGIFEVCWNK-EGDKIAACF 478 (490)
Q Consensus 408 ~-~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~~------~~~~~~~~~~v~~~~~~~-~g~~la~~~ 478 (490)
. ..+..+.+|.+.|+.|+|.|.. ..|+|||.|..+.+||+.+-- .+-.+...+.|+.+.|++ .++.++.|+
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 4 5788899999999999999964 789999999999999997521 123344556799999997 567999988
Q ss_pred CCC
Q 011224 479 ANH 481 (490)
Q Consensus 479 ~d~ 481 (490)
.+.
T Consensus 356 ~kk 358 (364)
T KOG0290|consen 356 GKK 358 (364)
T ss_pred cCe
Confidence 753
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.3e-18 Score=155.67 Aligned_cols=159 Identities=26% Similarity=0.529 Sum_probs=137.3
Q ss_pred EecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCC-------ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 320 TFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 320 ~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
.+.||+++|..++|+|-. ..|||||+|.+|.||.+..+ .++..+.+|...|..++|+|.-. ++|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~--------NVL 147 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP--------NVL 147 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch--------hhH
Confidence 467999999999999954 67899999999999998544 34677889999999999999764 489
Q ss_pred EEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC--EEEEEECC
Q 011224 392 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--IFEVCWNK 469 (490)
Q Consensus 392 ~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~--v~~~~~~~ 469 (490)
+|++.|.+|.+||+.+|+.+.++. |..-|++++|+.||.+|+|.+.|..|+|||.++|+++..-.++.+ ...+-|-.
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 999999999999999999999988 999999999999999999999999999999999999877644433 45677889
Q ss_pred CCCEEEEEEC---CCcEEEEE
Q 011224 470 EGDKIAACFA---NHTVCVLD 487 (490)
Q Consensus 470 ~g~~la~~~~---d~~v~v~~ 487 (490)
+|+.+-+|+. ++.+.+||
T Consensus 227 ~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred cCceeeeccccccccceeccC
Confidence 9996667743 67888886
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=9.3e-17 Score=157.54 Aligned_cols=258 Identities=21% Similarity=0.296 Sum_probs=186.8
Q ss_pred CeEEEEECCCceeE-EecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCccee--E----eeeeeccCeEEEEccC
Q 011224 223 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK--Q----QFEFHSGPTLDVDWRN 294 (490)
Q Consensus 223 g~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~--~----~~~~~~~~~~~~~~~~ 294 (490)
+.+.||+....... ....-..+|++++|+|.. +.++.|..+|+|.+||++.+... . ....|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899997654221 222346789999999965 56778888999999999876542 1 2235677888888843
Q ss_pred ---CceEEEEcCCCeEEEEEcCCCcc-eeEe----cC-------CCCCeeEEEEcCCC-CEEEEEeCCCeEEEEe---cC
Q 011224 295 ---NVSFATSSTDNMIYVCKIGENRP-IKTF----AG-------HQGEVNCVKWDPTG-SLLASCSDDVTAKIWN---MK 355 (490)
Q Consensus 295 ---~~~~~~~~~d~~i~~~~~~~~~~-~~~~----~~-------h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd---~~ 355 (490)
+..|++++.||.|..|+++.-.. +... .. -...+++++|.+.. ..|+.|+++|.|.--. +.
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 25589999999999998764321 1111 11 12357899998865 4688999999987632 22
Q ss_pred CC-----ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-CCeEEEEeeCCCCCEEEEEECCC
Q 011224 356 QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 356 ~~-----~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spd 429 (490)
.. +.+..+..|.++|+++.++|-+. .++++++ |.+++||... ...++..+..+...|++++|||.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~--------k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP--------KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCcc--------ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 22 12335567889999999999875 2445555 9999999988 67788888888888999999998
Q ss_pred CC-EEEEEeCCCcEEEEEcCCCeE--EEEE-ecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 430 GE-YLASGSLDKSMHIWSLKEGKI--VKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 430 g~-~l~s~s~dg~i~iw~~~~~~~--~~~~-~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.. .++++..||.|.|||+..... +.+. .+....+.+.|++.|+.|+.|..+|++++|++.
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 74 567788899999999975432 2222 123346778899999999999999999999873
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.2e-18 Score=158.19 Aligned_cols=290 Identities=22% Similarity=0.346 Sum_probs=211.6
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC--CC
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 213 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~ 213 (490)
..|.+|.+.|+.|.|+..|..|+|||.|..|.+||+..+...... ..+|...|....|-| +.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f----------------~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF----------------ESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc----------------ccccccchhhhhccCCCCC
Confidence 468899999999999999999999999999999999876532211 123344455555555 34
Q ss_pred CEEEEEeCCCeEEEEECC--Cce--eEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeee--ccC
Q 011224 214 TLLATGSYDGQARIWSTN--GDL--KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGP 286 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~--~~~--~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~ 286 (490)
+.+++++.||++++=.+. +.. ...+..|.++|.-++.-|... -|++++.|+.+.-.|++.......+.+. ..+
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 678999999999987643 222 345678999999999998764 5899999999999999876544433221 111
Q ss_pred ----e--EEEEccCCceEEEEcCCCeEEEEEcCCC------cceeEecCCC------CCeeEEEEcCCCCEEEEEeCCCe
Q 011224 287 ----T--LDVDWRNNVSFATSSTDNMIYVCKIGEN------RPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVT 348 (490)
Q Consensus 287 ----~--~~~~~~~~~~~~~~~~d~~i~~~~~~~~------~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~dg~ 348 (490)
. ..++..+...|++++.|..+++|+.+.- .++..|..|. -.|+|++|+.++.-+.+...|-.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 1 2334456678999999999999987532 2344444332 35899999988777777778888
Q ss_pred EEEEecCC--C----------ceeee-eccccc--cEEEEEE-cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE
Q 011224 349 AKIWNMKQ--D----------KYVHD-LREHSK--EIYTIRW-SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 412 (490)
Q Consensus 349 i~iwd~~~--~----------~~~~~-~~~~~~--~i~~v~~-~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 412 (490)
|.++.-.. + .++.. +++|.. .|..+-| .|.. .|+++||.-|.|.||+-.+++.+.
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---------EyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---------EYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---------ceEEecCccceEEEEecchhHHHH
Confidence 88884321 1 12222 455543 3444443 2332 288999999999999999999998
Q ss_pred EeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 413 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 413 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
-+.+....|+||-=+|--..||+.|-|..||||...+.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 88887779999999999999999999999999987543
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=5.8e-16 Score=137.99 Aligned_cols=232 Identities=23% Similarity=0.361 Sum_probs=161.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCC--CEEEEEecCCCCEEEEEeCC--CeEEEEEccCccee
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG--PIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWK 277 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~ 277 (490)
..+..+.|+.+...|..|+.||. +++..+....+ +..-.. .|..+-|+.. .++..+.+ +.+++.+.+.+..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~-~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKC-FSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHh-hcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 45677779999999999998874 66665432221 111122 2333444432 33333333 34666666544332
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
..+. ...+|.+|.++. +.|+.+=.+ .|.|||++..
T Consensus 82 Ce~~------------------------------------------fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M 116 (391)
T KOG2110|consen 82 CEIF------------------------------------------FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM 116 (391)
T ss_pred EEEe------------------------------------------cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc
Confidence 2221 123577777754 345555444 4999999999
Q ss_pred ceeeeeccc-cccEEEEEEcCCCCCCCCCCCcEEEEE-EE-CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEE
Q 011224 358 KYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILAS-AS-FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA 434 (490)
Q Consensus 358 ~~~~~~~~~-~~~i~~v~~~p~g~~~~~~~~~~~l~s-gs-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 434 (490)
++++++... ..+-.-++++|+... .+||. ++ ..|.|.|||+.+-+.+..+..|.+++-+|+|+|+|.+||
T Consensus 117 klLhTI~t~~~n~~gl~AlS~n~~n-------~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llA 189 (391)
T KOG2110|consen 117 KLLHTIETTPPNPKGLCALSPNNAN-------CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLA 189 (391)
T ss_pred eeehhhhccCCCccceEeeccCCCC-------ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEE
Confidence 999888654 233233445554321 24443 22 468999999999999999999999999999999999999
Q ss_pred EEeCCCc-EEEEEcCCCeEEEEEecC---CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 435 SGSLDKS-MHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 435 s~s~dg~-i~iw~~~~~~~~~~~~~~---~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|||..|+ |+||.+.+|+.+..|... ..|++++|+|++++|++.+..++|+||-+.
T Consensus 190 TASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 190 TASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9999986 899999999999888542 358999999999999999999999999764
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=1.5e-18 Score=158.38 Aligned_cols=227 Identities=21% Similarity=0.324 Sum_probs=188.7
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCC
Q 011224 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ 325 (490)
Q Consensus 246 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~ 325 (490)
+.+.+..+|.+|+.|+.-|.|-.+|..++.+...+.. ...+.++.|..+..|++....+.+++||-... -+.-+.. .
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~Gt-ElHClk~-~ 209 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGT-ELHCLKR-H 209 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCc-EEeehhh-c
Confidence 6789999999999999999999999999987766543 34566777877777777778888999985432 2222222 3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeC
Q 011224 326 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~ 405 (490)
..|..+.|-|..-+|++++..|.++.-|+.+|+.+..++...+.+..++-+|-.. ++-+|...|+|.+|..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na---------Vih~GhsnGtVSlWSP 280 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA---------VIHLGHSNGTVSLWSP 280 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc---------eEEEcCCCceEEecCC
Confidence 4688899999999999999999999999999999999988888888888888765 7889999999999999
Q ss_pred CCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEE
Q 011224 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 485 (490)
Q Consensus 406 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v 485 (490)
...+++..+-.|.++|.+|++.++|+|+||.|.|..|+|||++....+.++....+...+++|..| .|| ++....|.+
T Consensus 281 ~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA-~~~G~~v~i 358 (545)
T KOG1272|consen 281 NSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLA-LSYGDHVQI 358 (545)
T ss_pred CCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc-cee-eecCCeeee
Confidence 999999888899999999999999999999999999999999988877777666667888998887 333 333446778
Q ss_pred E
Q 011224 486 L 486 (490)
Q Consensus 486 ~ 486 (490)
|
T Consensus 359 w 359 (545)
T KOG1272|consen 359 W 359 (545)
T ss_pred e
Confidence 7
No 193
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=6.3e-17 Score=159.65 Aligned_cols=211 Identities=20% Similarity=0.232 Sum_probs=149.2
Q ss_pred CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC---CeEEEEEccCcceeEeeeeeccCeEEEEccCCceE
Q 011224 222 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 298 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
+..|++||..+.....+..|...+...+|+|+|++|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-------------------- 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-------------------- 242 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE--------------------
Confidence 468999998877666777888899999999999999887654 368888887654211
Q ss_pred EEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEE--ecCCCceeeeeccccccEEEEEE
Q 011224 299 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIW--NMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
+..+.+| ..+++|+|||+.|+.++ .+|.+.|| |+.++. ...+..+...+....|
T Consensus 243 -------------------l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~w 299 (429)
T PRK01742 243 -------------------VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSW 299 (429)
T ss_pred -------------------EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEE
Confidence 1112233 23589999999887764 68876665 555554 3445556666788999
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
+|+|. .+++++..+|..+||++... .....+ ++.. ..++|||||++|+.++.++ +.+||+.+++...
T Consensus 300 SpDG~--------~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 300 SPDGQ--------SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred CCCCC--------EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence 99986 24455556788888876532 222222 3433 4678999999998887765 5669999887543
Q ss_pred EEecCCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 455 TYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 455 ~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.... .....++|+|+|++|++++.++.+.+|.+
T Consensus 368 lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 368 LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 3222 23457889999999999999998888764
No 194
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=9.4e-17 Score=158.45 Aligned_cols=213 Identities=17% Similarity=0.227 Sum_probs=144.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEe-CCCeEEEE--EccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVW--DVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iw--d~~~~ 274 (490)
...+...+|||||+.|+.++.+ ..|++|++.+.....+....+....++|+|+|++|+.++ .+|.+.|| |+.++
T Consensus 203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~ 282 (429)
T PRK01742 203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG 282 (429)
T ss_pred CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCC
Confidence 4568999999999999988754 379999987643333332233344689999999888764 57766655 33332
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEe
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWN 353 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iwd 353 (490)
. +..+..+...+..+.|+|||+.|+.++ .+|...||+
T Consensus 283 ~------------------------------------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 283 T------------------------------------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred C------------------------------------------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 2 122334455677899999999776555 578888988
Q ss_pred cCCCc-eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCE
Q 011224 354 MKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432 (490)
Q Consensus 354 ~~~~~-~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~ 432 (490)
+.... ....+ .+.. +...|+|+|. .|+..+.++ +.+||+.+++.......+ ...+++|+|+|++
T Consensus 321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~---------~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~ 385 (429)
T PRK01742 321 MSASGGGASLV-GGRG--YSAQISADGK---------TLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIM 385 (429)
T ss_pred EECCCCCeEEe-cCCC--CCccCCCCCC---------EEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCE
Confidence 75322 22222 2322 4567888886 455555554 566999888754322222 2456889999999
Q ss_pred EEEEeCCCcEEEEEc--CCCeEEEEEec-CCCEEEEEECCC
Q 011224 433 LASGSLDKSMHIWSL--KEGKIVKTYTG-NGGIFEVCWNKE 470 (490)
Q Consensus 433 l~s~s~dg~i~iw~~--~~~~~~~~~~~-~~~v~~~~~~~~ 470 (490)
|+.++.++.+.+|.+ .+|+....+.. .+.+..++|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999999998888876 35777777765 345888999985
No 195
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.9e-15 Score=134.72 Aligned_cols=235 Identities=17% Similarity=0.295 Sum_probs=169.8
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
...++.+.|+.+...|..|+.|| -++|....... ..+.......|.-+-||..---+++...
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-----------------~~~~~~~~~~IvEmLFSSSLvaiV~~~q 66 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-----------------CFSKDTEGVSIVEMLFSSSLVAIVSIKQ 66 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-----------------hhcccCCCeEEEEeecccceeEEEecCC
Confidence 34577778999999999999998 46676543211 0111111233555667665333334333
Q ss_pred CCeEEEEECCCce-eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee---ccCeEEEEccCCc-
Q 011224 222 DGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH---SGPTLDVDWRNNV- 296 (490)
Q Consensus 222 dg~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~- 296 (490)
-+.+++.+..... +|.+ ....+|.+++++.+ +|+++=.+ .|.|||+++++...++... ...+.++.+....
T Consensus 67 pr~Lkv~~~Kk~~~ICe~-~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ 142 (391)
T KOG2110|consen 67 PRKLKVVHFKKKTTICEI-FFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC 142 (391)
T ss_pred CceEEEEEcccCceEEEE-ecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCc
Confidence 3568888865432 3332 24568899998764 67776654 4999999999988877654 2234555554433
Q ss_pred eEE--EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCe-EEEEecCCCceeeeeccc--cccEE
Q 011224 297 SFA--TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIWNMKQDKYVHDLREH--SKEIY 371 (490)
Q Consensus 297 ~~~--~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--~~~i~ 371 (490)
.++ .+.+.|.|++|+..+-+++..+..|.+.+.|++|+++|.+|||+|+.|+ |||+.+..+..+.+|+-. ...|+
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIY 222 (391)
T ss_pred eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEE
Confidence 232 2345789999999999999999999999999999999999999999997 699999999999888743 45689
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
+++|+|++. +|++.|..++|++|.+..
T Consensus 223 SL~Fs~ds~---------~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 223 SLSFSPDSQ---------FLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEECCCCC---------eEEEecCCCeEEEEEecc
Confidence 999999986 788889999999998864
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2e-15 Score=127.12 Aligned_cols=277 Identities=13% Similarity=0.203 Sum_probs=194.3
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 223 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 223 (490)
.|.+-+++|.+++|+.|..+|.|.+..+.+-........+...+. ....|.++|+.++|+ ..+|++|+. |
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv-------~eqahdgpiy~~~f~--d~~Lls~gd-G 81 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIV-------PEQAHDGPIYYLAFH--DDFLLSGGD-G 81 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCccee-------eccccCCCeeeeeee--hhheeeccC-c
Confidence 477788999999999999999999999865322111111111111 114567899999999 346777664 9
Q ss_pred eEEEEECCCce-------e--EEecCCC-----CCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 224 QARIWSTNGDL-------K--CTLSKHK-----GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 224 ~i~iw~~~~~~-------~--~~~~~h~-----~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
.|+-|..+... . ....-|. -.|.++-..|..+-++.++.|+.+..||+++++....+.+|..-+.+
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 99988643211 0 1122233 24788888999888888889999999999999999999999999998
Q ss_pred EEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecC---------CCC-CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q 011224 290 VDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAG---------HQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 290 ~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---------h~~-~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~ 358 (490)
+..+ .+..+.+++.||++++||.++.+.++.+.. |-+ .|-|++. +..++++|+ ...+.+|.++...
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence 8874 567899999999999999999988776542 222 3666665 456776665 4579999999888
Q ss_pred eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEe
Q 011224 359 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGS 437 (490)
Q Consensus 359 ~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s 437 (490)
+...|. ...++.-+.|..+ .+++++..+.|.-|.+. |..-..+.......++..|+-.- ++|-.++
T Consensus 239 ~t~vfp-ipa~v~~v~F~~d-----------~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag 305 (325)
T KOG0649|consen 239 STCVFP-IPARVHLVDFVDD-----------CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAG 305 (325)
T ss_pred ceEEEe-cccceeEeeeecc-----------eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecc
Confidence 776653 3445666777554 35667777788888764 44444444444456666665443 5566677
Q ss_pred CCCcEEEEE
Q 011224 438 LDKSMHIWS 446 (490)
Q Consensus 438 ~dg~i~iw~ 446 (490)
..+.+.|+.
T Consensus 306 ~s~~~~i~~ 314 (325)
T KOG0649|consen 306 FSNKLHILK 314 (325)
T ss_pred cceeeeeee
Confidence 777777763
No 197
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.7e-16 Score=136.86 Aligned_cols=229 Identities=27% Similarity=0.501 Sum_probs=163.2
Q ss_pred ccccceeEEEECCCCC-----EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CC
Q 011224 140 GHTSEVCACAWSPAGS-----LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG 213 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~-----~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~ 213 (490)
.|..+++.+-|.|+.. +|||.| ..+|+|.+.........+ . .+.. .....+..++++..|+. +-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~----~--~L~~--~kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ----S--VLNN--NKNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh----h--hhcc--CcccccCCcccccccccCCc
Confidence 4889999999999863 555543 579999986421110000 0 0000 11223467899999986 77
Q ss_pred CEEEEEeCCCeEEEEECCCc----eeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEee-eee--cc
Q 011224 214 TLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF-EFH--SG 285 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~--~~ 285 (490)
+++.+.+-|-+..||+++.+ ....+..|..+|+.++|...+ +.|++.+.||+||++|++..+-...+ +.. ..
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 89999999999999998754 466788999999999999865 56899999999999999876533322 211 23
Q ss_pred CeEEEEccCC--ceEEE-EcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCce-
Q 011224 286 PTLDVDWRNN--VSFAT-SSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY- 359 (490)
Q Consensus 286 ~~~~~~~~~~--~~~~~-~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~- 359 (490)
+..-+.|... ..+++ ..+...|.+.|++.. .++..+.+|.+.|++++|.|.. ..|.||++|..+.|||+.+.-.
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 4555666432 23333 334567888888754 5788899999999999999975 6799999999999999875422
Q ss_pred -----eeeeccccccEEEEEEcCCC
Q 011224 360 -----VHDLREHSKEIYTIRWSPTG 379 (490)
Q Consensus 360 -----~~~~~~~~~~i~~v~~~p~g 379 (490)
+.... ..+.|..+.|+|..
T Consensus 324 ~~~dPilay~-a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 324 NGEDPILAYT-AGGEVNQIQWSSSQ 347 (364)
T ss_pred CCCCchhhhh-ccceeeeeeecccC
Confidence 11122 45788999998754
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=3.8e-15 Score=142.49 Aligned_cols=265 Identities=15% Similarity=0.226 Sum_probs=164.5
Q ss_pred ccceeEEEECCCCCEEEEEE-CCCcEEEEecCC-CCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 142 TSEVCACAWSPAGSLLASGS-GDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs-~D~~i~~Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
.+....++++|++++|+.++ .++.|.+|++.. +. +. ..... ........++|+|++++|+++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~---------l~--~~~~~-----~~~~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA---------LT--FAAES-----PLPGSPTHISTDHQGRFLFSA 97 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc---------eE--Eeeee-----cCCCCceEEEECCCCCEEEEE
Confidence 35577899999999887765 578899999852 21 10 11111 012245689999999998887
Q ss_pred eC-CCeEEEEECCCc-----eeEEecCCCCCEEEEEecCCCCEEEE-EeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 220 SY-DGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 220 ~~-dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
+. ++.|.+|+++.. ....+. +.....+++++|+++++++ ...++.|.+||+.+........
T Consensus 98 ~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~----------- 165 (330)
T PRK11028 98 SYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE----------- 165 (330)
T ss_pred EcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-----------
Confidence 65 789999987521 112222 2234577899999998865 4556999999987532110000
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEecCC--Cc--eeeeecccc
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQ--DK--YVHDLREHS 367 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~iwd~~~--~~--~~~~~~~~~ 367 (490)
...+ .... ......++|+|+|++++++.. +++|.+|++.. +. .+..+....
T Consensus 166 ----------------------~~~~-~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 166 ----------------------PAEV-TTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred ----------------------CCce-ecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 0000 0000 122457899999999877766 89999999973 22 233332211
Q ss_pred ------ccEEEEEEcCCCCCCCCCCCcEEEEEE-ECCCcEEEEeCCCCeEEEEeeCCC---CCEEEEEECCCCCEEEEEe
Q 011224 368 ------KEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSLNGHR---EPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 368 ------~~i~~v~~~p~g~~~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spdg~~l~s~s 437 (490)
.....+.++|++. +|+++ ..++.|.+|++........+.++. .....++|+|+|++|++++
T Consensus 222 ~~~~~~~~~~~i~~~pdg~---------~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGR---------HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred CcCCCCccceeEEECCCCC---------EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEE
Confidence 1223577888875 45555 457899999986433222222221 2346789999999998777
Q ss_pred C-CCcEEEEEcC--CCeE--EEEEecCCCEEEEEE
Q 011224 438 L-DKSMHIWSLK--EGKI--VKTYTGNGGIFEVCW 467 (490)
Q Consensus 438 ~-dg~i~iw~~~--~~~~--~~~~~~~~~v~~~~~ 467 (490)
. +++|.+|++. +|.+ +..+.......++++
T Consensus 293 ~~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 293 QKSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred ccCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 5 8999999874 4543 344433333455544
No 199
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.75 E-value=5.2e-16 Score=136.12 Aligned_cols=302 Identities=16% Similarity=0.273 Sum_probs=185.4
Q ss_pred ceeEEEECCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE-EEEEeC
Q 011224 144 EVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL-LATGSY 221 (490)
Q Consensus 144 ~V~~~~~sp~~~~l-~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~-l~sg~~ 221 (490)
.|.-+.|..|.-++ ..+..|+.|.+|++....- .-.....+.++..++|||||+. |.+...
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-----------------~ckIdeg~agls~~~WSPdgrhiL~tseF 112 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-----------------YCKIDEGQAGLSSISWSPDGRHILLTSEF 112 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeeccee-----------------EEEeccCCCcceeeeECCCcceEeeeecc
Confidence 34445555554433 3344556666666543211 1112334677999999999965 556677
Q ss_pred CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc---CcceeEeeeeeccCeEEEEccCCceE
Q 011224 222 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFEFHSGPTLDVDWRNNVSF 298 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
+-.|.||.+.......+.--+..+.+++|+|+|++.+.++.--..-..++. .-.+...+.........+.|.++
T Consensus 113 ~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd--- 189 (447)
T KOG4497|consen 113 DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD--- 189 (447)
T ss_pred eeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC---
Confidence 899999999877666565555667899999999998877653111111111 11122223333333344555443
Q ss_pred EEEcCCCeEEEEEcCCCcceeEecCCC-CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec-------------
Q 011224 299 ATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR------------- 364 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------- 364 (490)
++.+.+|+.--.-.+..+ |. -.+..+.|+|-+++++.|+.|+.+||.+--+.+...++-
T Consensus 190 -----g~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 190 -----GNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred -----CcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 344556664332222222 32 357889999999999999999999885532222111100
Q ss_pred -----------------------cc------------------------------cccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 365 -----------------------EH------------------------------SKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 365 -----------------------~~------------------------------~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
.| ...+..++|+++. .++
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds---------~y~ 333 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS---------TYA 333 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc---------eEE
Confidence 00 0012223444443 255
Q ss_pred EEEEC--CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECC
Q 011224 392 ASASF--DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNK 469 (490)
Q Consensus 392 ~sgs~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~ 469 (490)
++-.. -+.+-+||+++.+....+. ...+|....|+|....|+.+.....+++|....-..+..-...-.|..++|+-
T Consensus 334 aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~ 412 (447)
T KOG4497|consen 334 ATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQ 412 (447)
T ss_pred eeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecC
Confidence 55432 3568999998766544443 55689999999999988888877889999987655554432233589999999
Q ss_pred CCCEEEEEECCCc
Q 011224 470 EGDKIAACFANHT 482 (490)
Q Consensus 470 ~g~~la~~~~d~~ 482 (490)
+|..++.++.|..
T Consensus 413 ~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 413 PGEFIVLCGKDAF 425 (447)
T ss_pred CCcEEEEEcCCce
Confidence 9999999998874
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.9e-16 Score=146.31 Aligned_cols=205 Identities=17% Similarity=0.262 Sum_probs=146.8
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC--CC
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 213 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~ 213 (490)
..|.||++-|+|+.|+.+|.+|+|||.|-.+.|||...-+ .+.....+|...|.++.|-| +.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----------------llhsI~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----------------LLHSISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----------------eeeeeecccccceeEEeeeccCCC
Confidence 4588999999999999999999999999999999975322 11122346778899999988 56
Q ss_pred CEEEEEeCCCeEEEEECCCc-----------eeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCccee-Eee
Q 011224 214 TLLATGSYDGQARIWSTNGD-----------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWK-QQF 280 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~-----------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~-~~~ 280 (490)
++++||..|..|+++|+... ....+..|+..|.-|+-.|++ +.|.+++.||+++.+|++..... ...
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 79999999999999998631 123456799999999999998 78999999999999999863211 110
Q ss_pred eee-----------ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCc------------------ceeEec-CCC-----
Q 011224 281 EFH-----------SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR------------------PIKTFA-GHQ----- 325 (490)
Q Consensus 281 ~~~-----------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~------------------~~~~~~-~h~----- 325 (490)
..+ .-..+.+.......++.++.+-..++||.+... ++..|. +|.
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 011 112344555677889999999999999943210 122221 332
Q ss_pred ---CC---eeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 326 ---GE---VNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 326 ---~~---v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
.. ++-+.|+|+|.-|+..-..-.|.++|+..
T Consensus 268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 12 34578999997665554445788888653
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.7e-15 Score=130.43 Aligned_cols=276 Identities=24% Similarity=0.401 Sum_probs=179.4
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC-CEEEEEeC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSY 221 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~sg~~ 221 (490)
-.+..++|++.--.++++..|.+|++|+-... .. ..++. .....|+|++|-|.+ .-|+.|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~p----------t~Lks------~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CP----------TKLKS------VSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CC----------ceecc------hhhcceeEEEeccCCcceeeeeec
Confidence 35778999996667889999999999985441 11 11111 124579999999965 45555555
Q ss_pred CCeEEEEECCCce---------------eEEecCCCCCEEEEEecCCCCEEEEEeC-CCeEEEEEccCcceeEeeeeecc
Q 011224 222 DGQARIWSTNGDL---------------KCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 222 dg~i~iw~~~~~~---------------~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~ 285 (490)
+-|.||...... +..-.+| .+|+++.|+++|..+++++- |..|+|||+.++..+.
T Consensus 162 -~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p------- 232 (445)
T KOG2139|consen 162 -AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP------- 232 (445)
T ss_pred -ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-------
Confidence 668999754211 1122344 68999999999999998875 5779999998875322
Q ss_pred CeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc
Q 011224 286 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 365 (490)
+. .-.-+.+.-+.|||||.+|+.++-|+..++|.............
T Consensus 233 --------------------------------L~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l 278 (445)
T KOG2139|consen 233 --------------------------------LI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL 278 (445)
T ss_pred --------------------------------cc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence 11 01234577799999999999999999999996443222111222
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC----C--------e---EEEEe------eC---CCCCE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL----G--------K---LLYSL------NG---HREPV 421 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~----~--------~---~~~~~------~~---h~~~v 421 (490)
..+.|.+.+|+|.|+ .+|++++..- ++|.+.. + + .+..+ .+ .-+++
T Consensus 279 gsgrvqtacWspcGs--------fLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgea 348 (445)
T KOG2139|consen 279 GSGRVQTACWSPCGS--------FLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEA 348 (445)
T ss_pred cCCceeeeeecCCCC--------EEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcc
Confidence 345899999999997 3555555433 3333211 0 0 11111 11 13578
Q ss_pred EEEEECCCCCEEEEEeCC--------CcEEEEEcCCCeEEEEE----ecCCCEEEEEECC---CCCEEEEEECCCcEEEE
Q 011224 422 YSLAFSPTGEYLASGSLD--------KSMHIWSLKEGKIVKTY----TGNGGIFEVCWNK---EGDKIAACFANHTVCVL 486 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~d--------g~i~iw~~~~~~~~~~~----~~~~~v~~~~~~~---~g~~la~~~~d~~v~v~ 486 (490)
.+++|.|.|.+||+--.. ..|.+|+.+.--.+... .+....--++|+| +|..|..|-..|.+.-|
T Consensus 349 q~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 349 QCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred ceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEee
Confidence 999999999999985433 34677776654333222 1122244566766 56788888888888888
Q ss_pred Ee
Q 011224 487 DF 488 (490)
Q Consensus 487 ~~ 488 (490)
.+
T Consensus 429 pl 430 (445)
T KOG2139|consen 429 PL 430 (445)
T ss_pred ee
Confidence 65
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.73 E-value=1.9e-15 Score=132.29 Aligned_cols=228 Identities=20% Similarity=0.302 Sum_probs=169.3
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
..+|+|.||++|++.+|.+-....|.||.......- ........|...|+.++|+|..+.|++|+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w--------------~~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW--------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc--------------eeceehhhhCcceeEEeecCCCCceeEccC
Confidence 468999999999999999999999999986544311 111123456788999999999999999999
Q ss_pred CCeEEEEEC-CC---ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 222 DGQARIWST-NG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 222 dg~i~iw~~-~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
|.+.+||.. .+ .....+..|+.+++++.|+|.++.|++||.-+.|.||-.+...
T Consensus 76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------------------- 133 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------------------- 133 (361)
T ss_pred CCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc----------------------
Confidence 999999987 33 2344677899999999999999999999999999988654321
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC------------------CCce
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK------------------QDKY 359 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~ 359 (490)
-|-+. +. .-..+...|++++|+|++-+++.|+.|+..|+|..- -+.+
T Consensus 134 -----------dWWVs--Kh--ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~l 198 (361)
T KOG1523|consen 134 -----------DWWVS--KH--IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQL 198 (361)
T ss_pred -----------ceehh--hh--hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHH
Confidence 01000 00 112345679999999999999999999999999642 1122
Q ss_pred eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEeeCCCCCEEEEEECCC
Q 011224 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 360 ~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd 429 (490)
..++....+.+..+.|+|.|. .|+-.++|..+.+-|..... .+..+..-.-|..++.|-.+
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~---------~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGN---------RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred HHhhccCCCceeeeEeCCCCC---------EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 333434567899999999996 78889999999999987654 23333322356677776543
No 203
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.1e-16 Score=154.41 Aligned_cols=255 Identities=19% Similarity=0.266 Sum_probs=170.7
Q ss_pred cceeEEEECC--CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 143 SEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 143 ~~V~~~~~sp--~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
..|+.+.+-. |..+|++|+.||.||||+-...... .+.-+.....+.+......+.-.-++|.....+|+++|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~-----~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK-----KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccC-----CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC
Confidence 5688888755 3568999999999999985432210 00001111111111111112224567888767777777
Q ss_pred CCCeEEEEECCCceeEE--ecCCCCCEEEEEec-CCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 221 YDGQARIWSTNGDLKCT--LSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~~--~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
.-..|+|||...+.+.. -.+....|+++.-+ +.|+.+++|..||+|++||.+....
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------- 1243 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------- 1243 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---------------------
Confidence 78999999988765432 23344567776543 3468999999999999999875321
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCC--eeEEEEcCCCC-EEEEEeCCCeEEEEecCCCcee--eeeccc---ccc
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYV--HDLREH---SKE 369 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~---~~~ 369 (490)
...+..++.|+.. |..+.+.+.|- .|++|+.||.|++||++..... .++..| .+.
T Consensus 1244 -----------------ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1244 -----------------DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred -----------------cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 1123345567665 88888888664 4999999999999999874211 122222 234
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC-------CCCCEEEEEECCCCCEEEEEeCCCcE
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HREPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
.+++..+++.. ++|+|+. +.|+||++. |+.+..++. -.+.+.+++|+|-.-+||+|+.|.+|
T Consensus 1307 lTal~VH~hap---------iiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1307 LTALTVHEHAP---------IIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred ceeeeeccCCC---------eeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 67777776654 7899988 999999986 444433322 23568999999999999999999999
Q ss_pred EEEEcCCCe
Q 011224 443 HIWSLKEGK 451 (490)
Q Consensus 443 ~iw~~~~~~ 451 (490)
.||...++.
T Consensus 1376 ~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1376 SIYSCEKPR 1384 (1387)
T ss_pred EEeecCCcC
Confidence 999877654
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.7e-15 Score=137.42 Aligned_cols=195 Identities=23% Similarity=0.302 Sum_probs=145.9
Q ss_pred EEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc-
Q 011224 288 LDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE- 365 (490)
Q Consensus 288 ~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 365 (490)
..+.+.. +..+++++.||++++|+......+.....|.++|.+++|+|||++|++-+.| ..+||+..++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 3455543 4778999999999999998888888888999999999999999999999999 999999999966655432
Q ss_pred -ccccEEEEEEcCCCCCCCCCCCcEEEE-EEECCCcEEEEeCCCCeE-----EEEeeCCCCCEEEEEECCCCCEEEEEeC
Q 011224 366 -HSKEIYTIRWSPTGSGTNNPNQQLILA-SASFDSTVKLWDVELGKL-----LYSLNGHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 366 -~~~~i~~v~~~p~g~~~~~~~~~~~l~-sgs~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
.......+.|+.++.. ..++++ .-..-+.|+.|++...+. ..+...-...|.+++.|++|+++|.|+.
T Consensus 227 ~k~~~~~~cRF~~d~~~-----~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQ-----ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ccchhhhhceecccCCC-----ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 2334556677766532 112333 333445666666532211 1111122347999999999999999999
Q ss_pred CCcEEEEEcCCCeEEEEEec-C-CCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 439 DKSMHIWSLKEGKIVKTYTG-N-GGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 439 dg~i~iw~~~~~~~~~~~~~-~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
||.|-|++..+-+.++.... | +-|++++|+||.++++.-+.+.+..|.-+
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 99999999998777766543 3 35999999999999999888888887654
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=4.8e-15 Score=129.75 Aligned_cols=235 Identities=14% Similarity=0.227 Sum_probs=163.3
Q ss_pred CEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc--CeEEEEccCCceEEEEcCC------CeEEEEEcCCC
Q 011224 244 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTLDVDWRNNVSFATSSTD------NMIYVCKIGEN 315 (490)
Q Consensus 244 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~ 315 (490)
...+++|+.+...|+.|..+ -.+||+.+.-+....-..+.+ .+..+-|+.+...+.++.+ +.+.+||--..
T Consensus 7 ~~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 34568999988877777655 479998765322111111111 2222334455555555443 57999997777
Q ss_pred cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
+++.++. ...+|.+|.+.++ .|+.. ..+.|.||... .-+.++.+.....+---++..|... ..++..-|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~------k~~LafPg 155 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN------KSLLAFPG 155 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCC------ceEEEcCC
Confidence 7777765 4678999999875 34433 45789999876 3344444432221111222233321 12334446
Q ss_pred ECCCcEEEEeCCCCeE--EEEeeCCCCCEEEEEECCCCCEEEEEeCCCc-EEEEEcCCCeEEEEEec---CCCEEEEEEC
Q 011224 395 SFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTG---NGGIFEVCWN 468 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~-i~iw~~~~~~~~~~~~~---~~~v~~~~~~ 468 (490)
-.-|.|+|-|+...+. ...+.+|...|.+++.+-+|.+|||+|..|+ |+|||..+|++++.+.. +..|++++||
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 6779999999986655 4678899999999999999999999999986 89999999999988853 4569999999
Q ss_pred CCCCEEEEEECCCcEEEEEee
Q 011224 469 KEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 469 ~~g~~la~~~~d~~v~v~~~~ 489 (490)
|++.+||+++..|+|+|+.+|
T Consensus 236 p~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CCccEEEEEcCCCeEEEEEee
Confidence 999999999999999999886
No 206
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.9e-15 Score=134.23 Aligned_cols=278 Identities=17% Similarity=0.297 Sum_probs=194.1
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-------eeEE-ecCCCCCEEEEEecCCCCEEEEEeCCCeEEEE
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-------~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iw 269 (490)
.+|.+.|.++.||.++++|++|+.|..+++|.++.. .+.. -..|...|++|+|...+..+++|..+++|.+.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~H 132 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKH 132 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEee
Confidence 356788999999999999999999999999986531 1211 23467899999999999999999999999999
Q ss_pred EccCcceeEeeeee--ccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCc-ceeEec--CCCCCeeEEEEcCCC-CEEEE
Q 011224 270 DVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENR-PIKTFA--GHQGEVNCVKWDPTG-SLLAS 342 (490)
Q Consensus 270 d~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~--~h~~~v~~v~~~~~~-~~l~s 342 (490)
|+.+.+.+-.+... .+.|..++.. .+..|++.+.++.|.+|+.+... ++..+. ........+-|+|.. .+|++
T Consensus 133 DiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 133 DIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99998766554432 3466666553 36678899999999999998755 433322 223456788899976 56788
Q ss_pred EeCCCeEEEEecCCCce-ee------eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE-EEEe
Q 011224 343 CSDDVTAKIWNMKQDKY-VH------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSL 414 (490)
Q Consensus 343 ~~~dg~i~iwd~~~~~~-~~------~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~ 414 (490)
.+..+-+.+||.+.... +. .+......-.++.|+|.|.. |.+--.-..-.+||+-+.++ ++.+
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q---------~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ---------FMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe---------ehhhhccCCCEEeeeecccceeEec
Confidence 99999999999875421 11 11111223367889998862 22222222334566654332 2333
Q ss_pred eCCC-------CCEEEEEECCCCCEEEEEeCCCcEEEEEcCC-----C-----e-------------EEEEEecCCC-EE
Q 011224 415 NGHR-------EPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-----G-----K-------------IVKTYTGNGG-IF 463 (490)
Q Consensus 415 ~~h~-------~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~-----~-----~-------------~~~~~~~~~~-v~ 463 (490)
. |. ..|.+++|--|-. +++||.+=.|+||.+.. | . .+..+.++.. ++
T Consensus 284 D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~N 361 (609)
T KOG4227|consen 284 D-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPN 361 (609)
T ss_pred c-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccc
Confidence 2 22 2466778876544 89999999999998742 1 1 1123344433 67
Q ss_pred EEEECCCCCEEEEEECCCcEEEE
Q 011224 464 EVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 464 ~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
.+.|+|-.++|++.+....+++|
T Consensus 362 QVRF~~H~~~l~SSGVE~~~KlW 384 (609)
T KOG4227|consen 362 QVRFSQHNNLLVSSGVENSFKLW 384 (609)
T ss_pred ceeecCCcceEeccchhhheecc
Confidence 89999999999999999999998
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=3e-14 Score=136.22 Aligned_cols=306 Identities=15% Similarity=0.165 Sum_probs=189.4
Q ss_pred EEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECCCc-e
Q 011224 157 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTNGD-L 234 (490)
Q Consensus 157 l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~ 234 (490)
+++-..++.|.+.|..+.+. +..+... ..+ ..+.|++||+++++++.||.|.++|+... .
T Consensus 9 ~V~~~~~~~v~viD~~t~~~-------------~~~i~~~-----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~ 70 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKV-------------VARIPTG-----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV 70 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SE-------------EEEEE-S-----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE
T ss_pred EEEecCCCEEEEEECCCCeE-------------EEEEcCC-----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE
Confidence 34566789999999776432 1222111 123 34679999999999999999999998754 4
Q ss_pred eEEecCCCCCEEEEEecCCCCEEEEE-eCCCeEEEEEccCcceeEeeeeecc-------CeEEEE-ccCCceEEEEc-CC
Q 011224 235 KCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSG-------PTLDVD-WRNNVSFATSS-TD 304 (490)
Q Consensus 235 ~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~-~d 304 (490)
..++.. .....+++++++|++++++ ...+.+.++|.++.+.++.+..... .+..+- ......|+.+- ..
T Consensus 71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 445543 3345889999999998866 4689999999999988887654321 233333 23444465554 45
Q ss_pred CeEEEEEcCCCcceeE-ecCCCCCeeEEEEcCCCCEEEEE-eCCCeEEEEecCCCceeeeec----cccccEEEE-----
Q 011224 305 NMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR----EHSKEIYTI----- 373 (490)
Q Consensus 305 ~~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~v----- 373 (490)
+.|.+.+.....++.. ............|+|++++++.+ ..+..|-++|..+++.+..+. .|..+...+
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~ 229 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF 229 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence 7888888776554432 22233456678999999987654 456789999999988766542 233333322
Q ss_pred --EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE----eCCCcEEEEEc
Q 011224 374 --RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG----SLDKSMHIWSL 447 (490)
Q Consensus 374 --~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~----s~dg~i~iw~~ 447 (490)
.|...+.. . ...+.-....+.+||..+.+.+.++.....+ .-+.-||++++|... ...++|.++|.
T Consensus 230 g~vw~~~~~~------~-~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 230 GPVWATSGLG------Y-FAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEEEEEEBSS------S-SEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEEC
T ss_pred ceEEeecccc------c-eecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEEC
Confidence 12211111 1 1212222346778999999999999877667 778889999999887 45589999999
Q ss_pred CCCeEEEEEecCC--CEEEEEECCCCCEEEEEEC--CCcEEEEEee
Q 011224 448 KEGKIVKTYTGNG--GIFEVCWNKEGDKIAACFA--NHTVCVLDFR 489 (490)
Q Consensus 448 ~~~~~~~~~~~~~--~v~~~~~~~~g~~la~~~~--d~~v~v~~~~ 489 (490)
.+.+.+.++.... .+..+.|+++|+++-.+.. ++.|.|||..
T Consensus 302 ~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 302 KTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp CGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred cCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 9998888875433 4999999999996665544 3369999853
No 208
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=3e-16 Score=148.50 Aligned_cols=235 Identities=17% Similarity=0.307 Sum_probs=170.7
Q ss_pred cCCCCEEEE--EeCCCeEEEEECCC--ce----eEEecCCCCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 210 NGEGTLLAT--GSYDGQARIWSTNG--DL----KCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 210 s~~~~~l~s--g~~dg~i~iw~~~~--~~----~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
+.+..+++. .+.-|.|-||+++. .+ ...+ .....|+.+.|.| +.++|+.++.||.|++|-+..+.....
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~- 665 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN- 665 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc-
Confidence 334455544 35568999999753 11 1122 2345789999999 557899999999999998876542211
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEEecCCCce
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
...|-..+.+|...|+++.|||- ...|++++.|.+|++||+.+.+.
T Consensus 666 ---------------------------------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~ 712 (1012)
T KOG1445|consen 666 ---------------------------------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL 712 (1012)
T ss_pred ---------------------------------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh
Confidence 12345667889999999999995 46789999999999999999999
Q ss_pred eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEeeCCC-CCEEEEEECCCCCEEEEEe
Q 011224 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHR-EPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 360 ~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~-~~v~~l~~spdg~~l~s~s 437 (490)
...+.+|...|..++|+|+|. .+|+.+.||+|++|+.+++. .+++-++-. ..--.|.|.-+|+++++.|
T Consensus 713 ~~~l~gHtdqIf~~AWSpdGr---------~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 713 YSRLVGHTDQIFGIAWSPDGR---------RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred hheeccCcCceeEEEECCCCc---------ceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 999999999999999999997 79999999999999988764 344333221 1224578999999999888
Q ss_pred CC----CcEEEEEcCCCe--EEEEEe--cCCCEEEEEECCCCC-EEEEEECCCcEEEEEe
Q 011224 438 LD----KSMHIWSLKEGK--IVKTYT--GNGGIFEVCWNKEGD-KIAACFANHTVCVLDF 488 (490)
Q Consensus 438 ~d----g~i~iw~~~~~~--~~~~~~--~~~~v~~~~~~~~g~-~la~~~~d~~v~v~~~ 488 (490)
.| ..|.+|+..+-. .+.+.. ....+.-.-+.+|.+ ++++|-.|.+|..|.+
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 77 468899876532 222221 111223334566765 5667888999998876
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=2.4e-17 Score=160.46 Aligned_cols=233 Identities=21% Similarity=0.390 Sum_probs=179.2
Q ss_pred EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCC
Q 011224 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGEN 315 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~ 315 (490)
.+.+|.++|+|+.|...|.++++|+.|..++||...++.+.....+|.+.+.++... ++..+++++.|..|++|.+..+
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 567899999999999999999999999999999999999999999999999888764 5667788999999999999999
Q ss_pred cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee---ecc-ccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD---LRE-HSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
.|+..+.||++.|++++|+|-- +.+.||++++||.+-.-.+.. +.. ....+-++.|...+. -+
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~---------~f 331 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD---------RF 331 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc---------cc
Confidence 9999999999999999999953 888999999999872111111 000 112334444444443 47
Q ss_pred EEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECC
Q 011224 392 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNK 469 (490)
Q Consensus 392 ~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~ 469 (490)
+||+.|+.-+.|...... .+...+.-+.++.+. .+.+++-.+-.+++|++.+|.+++...++. .++.+.+||
T Consensus 332 ~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred ccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 889999988888654211 121112222222222 466777788899999999999988877754 488999999
Q ss_pred CCCEEE-EEECCCcEEEEEe
Q 011224 470 EGDKIA-ACFANHTVCVLDF 488 (490)
Q Consensus 470 ~g~~la-~~~~d~~v~v~~~ 488 (490)
-...++ +++.||...|||+
T Consensus 406 fn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred CCcHhhhhccCCCceEeeec
Confidence 877655 6899999999986
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=4.6e-16 Score=141.10 Aligned_cols=196 Identities=24% Similarity=0.327 Sum_probs=142.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEE-CCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 205 TTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 205 ~~~~~s~~~~~l~sg~~dg~i~iw~-~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
.+++|+++|..+++|+.||.+|||+ .+.........|.+.|.+|.|+|+|..|++-+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 7899999999999999999999999 4445555677899999999999999999999999 999999998743332210
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-----CEEEEEeCCCeEEEEecCCCc
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-----SLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-----~~l~s~~~dg~i~iwd~~~~~ 358 (490)
+..+ .....+.|+.|+ .+++....-+.|+.|++...+
T Consensus 226 --------~~k~------------------------------~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 226 --------FSKD------------------------------EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred --------cccc------------------------------hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 0000 011223333333 122222233444444432211
Q ss_pred -----eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCCEEEEEECCCCCE
Q 011224 359 -----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSPTGEY 432 (490)
Q Consensus 359 -----~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spdg~~ 432 (490)
...........|.+++.+++|. ++|.|+.||.|-|++..+.+.++-. ..|...|+.|.|+||.++
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGk---------f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGK---------FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCc---------EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 1122223345789999999997 8999999999999999887776554 579999999999999999
Q ss_pred EEEEeCCCcEEEEEcCC
Q 011224 433 LASGSLDKSMHIWSLKE 449 (490)
Q Consensus 433 l~s~s~dg~i~iw~~~~ 449 (490)
+++-+.|.++.|..+.-
T Consensus 339 ~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 339 LASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccccCCceeEEEEee
Confidence 99999999998887653
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.8e-15 Score=133.08 Aligned_cols=275 Identities=16% Similarity=0.246 Sum_probs=192.4
Q ss_pred ccceeEEEECCCCC--EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 142 TSEVCACAWSPAGS--LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 142 ~~~V~~~~~sp~~~--~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
...|.+++|.-++. .|...+.|..+.+..+......... ..+... ....++|..++... ..|++|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-------~~~~~~----~l~~~~I~gl~~~d--g~Litc 121 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-------DDAKTV----SLGTKSIKGLKLAD--GTLITC 121 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcccccc-------cccccc----ccccccccchhhcC--CEEEEE
Confidence 45677888877654 5555557777777776554322110 000111 11234455554432 367888
Q ss_pred eCCCeEEEEECC-----CceeEEecCCCCCEEEEEecCCCCEEEE-EeCC--CeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 220 SYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCD--KTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 220 ~~dg~i~iw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
-.+|.+.+|... ......+..+ ..+..|.-++...+|++ |+.. ..+++||+... .+.|....-+..-+
T Consensus 122 ~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L- 197 (412)
T KOG3881|consen 122 VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRL- 197 (412)
T ss_pred ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccc-
Confidence 999999999876 3333334333 45677777777666654 8887 78999999876 44443322111000
Q ss_pred ccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEEecCCC-ceeeeeccccc
Q 011224 292 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD-KYVHDLREHSK 368 (490)
Q Consensus 292 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~ 368 (490)
+-.|.+| ++.+.|-+. ...||+++.-+.+|+||.+.+ +++..+.....
T Consensus 198 ------------~LrVPvW-----------------~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~ 248 (412)
T KOG3881|consen 198 ------------GLRVPVW-----------------ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLEN 248 (412)
T ss_pred ------------cceeeee-----------------eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccC
Confidence 1122333 345667666 678999999999999999866 45777777788
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEE-eeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
++.++..-|.+. ++.+|..-|.+..||++.++.+.. +.+..+.|.+|..+|.+++||++|.|..|+|+|+
T Consensus 249 ~is~~~l~p~gn---------~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 249 PISSTGLTPSGN---------FIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cceeeeecCCCc---------EEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 899999889886 788999999999999999998877 8899999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEECCCC
Q 011224 448 KEGKIVKTYTGNGGIFEVCWNKEG 471 (490)
Q Consensus 448 ~~~~~~~~~~~~~~v~~~~~~~~g 471 (490)
.+.+++........++.+-+.++-
T Consensus 320 ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 320 KTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred ccchhhhhhhhhccccEEEecCCc
Confidence 998877665555667777776653
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.5e-16 Score=144.92 Aligned_cols=283 Identities=21% Similarity=0.343 Sum_probs=213.6
Q ss_pred ccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-c-eeEEecCCCCCEEEEEecCCC--CEEEEEeCCCeEEEEEc
Q 011224 196 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D-LKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 196 ~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~-~~~~~~~h~~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~ 271 (490)
....|.+.|..+.|+..|..|+||+.|..|.+||... . ......+|...|..-+|-|.. ..+++++.||.+++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 3456788999999999999999999999999999653 2 233457899999999998854 56999999999998876
Q ss_pred cCccee---EeeeeeccCeEEEEc--cCCceEEEEcCCCeEEEEEcCCCcceeEec---CCCC---CeeEEEEcCCCC-E
Q 011224 272 KTEEWK---QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQG---EVNCVKWDPTGS-L 339 (490)
Q Consensus 272 ~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~---~v~~v~~~~~~~-~ 339 (490)
....++ ..+..|.+++..+.. .....|.+++.|+.++-.|++...+...+. .+.. ....++..|-.. .
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 433332 234567788766655 445678999999999999999887755443 2233 467888888765 7
Q ss_pred EEEEeCCCeEEEEecCCCc------eeeeec------cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 340 LASCSDDVTAKIWNMKQDK------YVHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~~~------~~~~~~------~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
+++|+.|..+++||.+.-. .+..+- ...-.|++++|+.++.. |++...|-.|+++.-..
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE---------lLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE---------LLASYNDEDIYLFNKSM 367 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc---------eeeeecccceEEecccc
Confidence 9999999999999975321 122222 22345899999977752 44556677899985432
Q ss_pred --C----------eEEE-EeeCCCC--CEEEEE-ECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCC
Q 011224 408 --G----------KLLY-SLNGHRE--PVYSLA-FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKE 470 (490)
Q Consensus 408 --~----------~~~~-~~~~h~~--~v~~l~-~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~ 470 (490)
| ..+. .++||.. .|..+- |-|...|+++||.-|.|.||+-.+++++..+.+. ..|++|.=+|-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence 2 1222 3778865 366664 5788999999999999999999999998888764 35899999999
Q ss_pred CCEEEEEECCCcEEEEE
Q 011224 471 GDKIAACFANHTVCVLD 487 (490)
Q Consensus 471 g~~la~~~~d~~v~v~~ 487 (490)
--.||+++-|.-|+||.
T Consensus 448 ~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 448 LPVLASSGIDHDVKIWT 464 (559)
T ss_pred CchhhccCCccceeeec
Confidence 99999999999999994
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=8.7e-16 Score=142.94 Aligned_cols=195 Identities=19% Similarity=0.326 Sum_probs=141.4
Q ss_pred CCCCEEEEEeCCCeEEEEECCCceeEE-----ecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 211 GEGTLLATGSYDGQARIWSTNGDLKCT-----LSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~~~~~~-----~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+.+--++.|-..|.+.+.+........ ..-.+..|++++|-|.+ ..|+.+-.+|.+.+||..-.. ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~ 255 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GA 255 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cC
Confidence 566778888888999988854321111 11134789999999966 467778889999999862110 00
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcC-CCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
.+.....+.....|. |..|.-. ...|+..+.--.+.|+..+|+|||++||+.+.||.+||||..+..++..+
T Consensus 256 t~p~~~~~k~~~~f~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m 328 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFA-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM 328 (636)
T ss_pred CCCcccccCCCCeeE-------EeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH
Confidence 000000011111121 1111111 11344444434568999999999999999999999999999998888888
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
+..-+...|++|+|||. |+++|+.|.-|.||.+...+.+..=.+|+.+|+.|+|.|
T Consensus 329 kSYFGGLLCvcWSPDGK---------yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 329 KSYFGGLLCVCWSPDGK---------YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HhhccceEEEEEcCCcc---------EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 87788899999999997 899999999999999999999999999999999999987
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.1e-15 Score=132.19 Aligned_cols=241 Identities=19% Similarity=0.354 Sum_probs=160.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEec-CCCCCEEEEEecCCCCE-EEEEeCCCeEEEEEccCcceeEe
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
..+..++|++.-..|+++..|-.|++|+......+.++ .....|++++|.|.+.. |+.|+ -+-|.+|.....-.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln--- 174 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLN--- 174 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccc---
Confidence 45778899998888999999999999998765555443 24567999999997754 55554 45689997532110
Q ss_pred eeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEecCCCc
Q 011224 280 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDK 358 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~iwd~~~~~ 358 (490)
...+ .+ .... ....+....|| .+|++++|.+||..+++++. |..|.|||..++.
T Consensus 175 ----~~r~--------~~---~~s~---------~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 175 ----ANRN--------IR---MMST---------HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred ----cccc--------cc---cccc---------cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 0000 00 0000 00112233455 68999999999999999885 5689999999987
Q ss_pred eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE-Ee
Q 011224 359 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-GS 437 (490)
Q Consensus 359 ~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s-~s 437 (490)
.+.-.....+.+.-+.|||++. +|+.+..|+..++|+.....-.....-..+.|...+|+|+|++|.- .+
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd---------~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGD---------VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred cccccccCCCceeeEEEcCCCC---------EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 7654444556788899999997 7888999999999965432211122223458999999999987654 33
Q ss_pred CCCcEEEEEcC--C--C--------eE---EE------EEec----CCCEEEEEECCCCCEEEEEECCCc
Q 011224 438 LDKSMHIWSLK--E--G--------KI---VK------TYTG----NGGIFEVCWNKEGDKIAACFANHT 482 (490)
Q Consensus 438 ~dg~i~iw~~~--~--~--------~~---~~------~~~~----~~~v~~~~~~~~g~~la~~~~d~~ 482 (490)
.. =++|.+. . . +. +. +..+ .+.+-+++|.|.|.+||+-+..+.
T Consensus 301 gs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 301 GS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 33 3333321 1 0 01 11 1112 245778999999999999876543
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=1.3e-14 Score=147.36 Aligned_cols=303 Identities=18% Similarity=0.258 Sum_probs=195.5
Q ss_pred CceeeccccccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 133 SDVTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
..++.|..|...|..++.++.. .+++|||.||+||+|++..-...... . ...-.+......+.++.+.+
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s----~------rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS----A------RSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce----e------eeeEEEeccCCceEEEEecc
Confidence 3467888899999999998875 89999999999999997542211000 0 00011222356789999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCc--ee------EEecCC-CCCEEEE-EecC--CCCEEEEEeCCCeEEEEEccCcceeE-
Q 011224 212 EGTLLATGSYDGQARIWSTNGD--LK------CTLSKH-KGPIFSL-KWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ- 278 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~--~~------~~~~~h-~~~V~~l-~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~- 278 (490)
.+..+|.++.||.|++.+++.. .. .....+ .+.|..+ +|.. ....++.+..-+.|..||+++.....
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999987641 11 011112 2333333 3322 22467778888999999998765332
Q ss_pred -eeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcCCCC---EE-EEEe-CCCeEE
Q 011224 279 -QFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGS---LL-ASCS-DDVTAK 350 (490)
Q Consensus 279 -~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~---~l-~s~~-~dg~i~ 350 (490)
......+.+.++.... ..-++.|...|.+.+||++=+.++..+. ++..+++.+..+|..+ .. ++++ ..+.|.
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 3334455666665543 3367888899999999999888877654 4556777777776543 44 4444 577899
Q ss_pred EEecCCCceeeeeccccccEEEEEE-cCCC-------C---CCCCCCCcEEEEEEECCCcEEEEeCCCCeEE--------
Q 011224 351 IWNMKQDKYVHDLREHSKEIYTIRW-SPTG-------S---GTNNPNQQLILASASFDSTVKLWDVELGKLL-------- 411 (490)
Q Consensus 351 iwd~~~~~~~~~~~~~~~~i~~v~~-~p~g-------~---~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~-------- 411 (490)
+|++.++.+...+....+ ...+.+ .|.. - .+.-+....++.+|+.|..||.||.......
T Consensus 1269 ~wn~~~g~~~~vl~~s~~-~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s 1347 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDG-APILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPS 1347 (1431)
T ss_pred eeecccCcceEEEEcCCC-CcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcc
Confidence 999998866555543311 111111 1111 0 0001122237889999999999996431110
Q ss_pred ---------------------EE---------------------------eeCCCCCEEEEEECCCC-CEEEEEeCCCcE
Q 011224 412 ---------------------YS---------------------------LNGHREPVYSLAFSPTG-EYLASGSLDKSM 442 (490)
Q Consensus 412 ---------------------~~---------------------------~~~h~~~v~~l~~spdg-~~l~s~s~dg~i 442 (490)
.. -..|..+|+++++-... .+|++++.||.|
T Consensus 1348 ~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~I 1427 (1431)
T KOG1240|consen 1348 TSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVI 1427 (1431)
T ss_pred ccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCee
Confidence 00 01477889999876544 588999999999
Q ss_pred EEEE
Q 011224 443 HIWS 446 (490)
Q Consensus 443 ~iw~ 446 (490)
+||.
T Consensus 1428 kiWk 1431 (1431)
T KOG1240|consen 1428 KIWK 1431 (1431)
T ss_pred eecC
Confidence 9993
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=1.6e-16 Score=145.31 Aligned_cols=266 Identities=18% Similarity=0.221 Sum_probs=201.1
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 223 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 223 (490)
+-..+.++.+|++|+.|+.-|.|-.+|+.++.... -.. -...|.++.|-.+.++||.+- ..
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~-----------Ei~-------v~Etv~Dv~~LHneq~~AVAQ-K~ 191 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF-----------EIN-------VMETVRDVTFLHNEQFFAVAQ-KK 191 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeee-----------eee-------hhhhhhhhhhhcchHHHHhhh-hc
Confidence 34668899999999999999999999987653210 000 123578888888888887764 57
Q ss_pred eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEc
Q 011224 224 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS 302 (490)
Q Consensus 224 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 302 (490)
.++|||-.+...+.+..| ..|..|.|.|-.-.|++++..|.++--|+.+|+.+..+....+.+..+.-.+ +..+-++.
T Consensus 192 y~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh 270 (545)
T KOG1272|consen 192 YVYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH 270 (545)
T ss_pred eEEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC
Confidence 899999888777777666 5688999999887888999999999999999999888877777665554433 44556788
Q ss_pred CCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCC
Q 011224 303 TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 382 (490)
Q Consensus 303 ~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~ 382 (490)
..|+|.+|.-....|+..+-.|.++|.+|++.++|+++||.+.|..++|||++.-..++++.. ..+...+++|..|
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--- 346 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--- 346 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---
Confidence 999999999988888888889999999999999999999999999999999998877666654 3445666776665
Q ss_pred CCCCCcEEEEEEECCCcEEEEeC-CCCe--EEEEeeCC--CCCEEEEEECCCCCEEEEEeCCCc
Q 011224 383 NNPNQQLILASASFDSTVKLWDV-ELGK--LLYSLNGH--REPVYSLAFSPTGEYLASGSLDKS 441 (490)
Q Consensus 383 ~~~~~~~~l~sgs~dg~i~iwd~-~~~~--~~~~~~~h--~~~v~~l~~spdg~~l~s~s~dg~ 441 (490)
+|| .+....|.||.= -.+. .-...-.| .++|..|.|.|-...|-.|-.-|.
T Consensus 347 -------lLA-~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 347 -------LLA-LSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred -------cee-eecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 344 555668999952 2211 11111112 358999999997766666555443
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=1e-14 Score=126.74 Aligned_cols=150 Identities=21% Similarity=0.510 Sum_probs=111.1
Q ss_pred eEEEEcCCCCEEEEEeC----------CCeEEEEecCCC-ceeeeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 329 NCVKWDPTGSLLASCSD----------DVTAKIWNMKQD-KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 329 ~~v~~~~~~~~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
..+.|+|.|.+|+.-.. -+...||.++.. ..+..+.. ..++|..++|+|+|. ...+++|..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~-------~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGN-------EFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCC-------EEEEEEccC
Confidence 35789999987654332 134556665332 33333332 345799999999986 234555667
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCE
Q 011224 397 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK 473 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~ 473 (490)
++.|.+||++ ++.+..+. ...++.|.|||+|++||+|+.+ |.|.+||+.+.+.+..+... .+..++|+|+|++
T Consensus 82 ~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRY 157 (194)
T ss_pred CcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCE
Confidence 8899999997 67777764 4578999999999999998754 67999999998888776543 5789999999999
Q ss_pred EEEEEC------CCcEEEEEee
Q 011224 474 IAACFA------NHTVCVLDFR 489 (490)
Q Consensus 474 la~~~~------d~~v~v~~~~ 489 (490)
|+++.. |..+.||++.
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEeccceeccccEEEEEec
Confidence 998853 6788999863
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=8.6e-13 Score=115.77 Aligned_cols=233 Identities=23% Similarity=0.349 Sum_probs=158.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCcee-EEecCCCCCEEEEEecCCCCEE-EEEeCC------CeEEEEEccCcc
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYL-LTGSCD------KTAIVWDVKTEE 275 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l-~s~s~D------~~v~iwd~~~~~ 275 (490)
...++|+.|...++.|..+| .+||+.+.-.. .....+.+.+.-+...-..++| +.|+.. ..|.|||-....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 55689999988888776654 79998765211 1111122222112222223444 344443 579999955555
Q ss_pred eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcC-CCcceeEecCCC--CCeeEEEEcCCCCEEEE-EeCCCeEEE
Q 011224 276 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQ--GEVNCVKWDPTGSLLAS-CSDDVTAKI 351 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s-~~~dg~i~i 351 (490)
++.++.+ ..++.++.++.+..++. ..+.|++|... ..+.+..+..-. ....+++-+....+||. |-.-|.|.|
T Consensus 87 ~i~el~f-~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi 163 (346)
T KOG2111|consen 87 CIIELSF-NSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQI 163 (346)
T ss_pred EEEEEEe-ccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEE
Confidence 5555544 45677777766654443 35688999887 344444443222 12444433333344443 345689999
Q ss_pred EecCCCce--eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc-EEEEeCCCCeEEEEeeCC--CCCEEEEEE
Q 011224 352 WNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGH--REPVYSLAF 426 (490)
Q Consensus 352 wd~~~~~~--~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~h--~~~v~~l~~ 426 (490)
-|+...+. ...+.+|...|.+++.+-+|. ++||+|..|+ |||||..+|..+.++.-. ...|.+|+|
T Consensus 164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 164 VDLASTKPNAPSIINAHDSDIACVALNLQGT---------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred EEhhhcCcCCceEEEcccCceeEEEEcCCcc---------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 99876655 466789999999999999996 8999999998 799999999999988632 356999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCC
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
||++.+||++|.-|+|+||.++.
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeec
Confidence 99999999999999999999875
No 219
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.7e-15 Score=132.36 Aligned_cols=185 Identities=21% Similarity=0.384 Sum_probs=143.5
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeeee--cccc-ccE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDL--REHS-KEI 370 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~-~~i 370 (490)
..++++...+.|++++..+++.+..|.++...++.+.|.. ....+.+|+.||+|++||++.......+ .+++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3467788899999999999999999999999999999976 4577999999999999999876554333 3333 344
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEE----CCCcEEEEeCCCCeE-EEE-eeCCCCCEEEEEECCCC-CEEEEEeCCCcEE
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASAS----FDSTVKLWDVELGKL-LYS-LNGHREPVYSLAFSPTG-EYLASGSLDKSMH 443 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs----~dg~i~iwd~~~~~~-~~~-~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~ 443 (490)
.+++-...+ .++++|. .+-.|.+||++..+. +.. ...|..-|++|.|+|.. .+|+|||-||.|.
T Consensus 121 ~~ld~nck~---------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 121 ICLDLNCKK---------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred eEeeccCcC---------CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 455443222 2566664 356799999998766 444 35699999999999975 7899999999999
Q ss_pred EEEcCCC----eEEEEEecCCCEEEEEECCCC-CEEEEEECCCcEEEEEee
Q 011224 444 IWSLKEG----KIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 444 iw~~~~~----~~~~~~~~~~~v~~~~~~~~g-~~la~~~~d~~v~v~~~~ 489 (490)
|||+..- .++.++.....|-.+.|..++ +.|..-+..++..+|++.
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 9999753 345666555668999999887 567777888999999873
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.7e-14 Score=132.54 Aligned_cols=272 Identities=17% Similarity=0.273 Sum_probs=191.7
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCceeEEecCCCC--CEEEEEecCCCCEEEEEeCCCeEEEEEccCcc
Q 011224 199 EKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNGDLKCTLSKHKG--PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~~~~~~~~h~~--~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 275 (490)
.++..-+.+..+|||+|+ ++|.+--.|++||+..-.+ .|..|.. .|.-.-++.+-.-++---.|++|-+..--...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee-eeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 345667889999999985 5677899999999865332 3445543 23333333333333334456666554321110
Q ss_pred eeEeeeeeccCe--EEEEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 276 WKQQFEFHSGPT--LDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352 (490)
Q Consensus 276 ~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iw 352 (490)
.. . .-|. .++.++ .+.-+..++....||-.++..++-+..|....+.++++..++-..+|++|+.+|.|.+|
T Consensus 128 y~--~---RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 128 YR--T---RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred ee--e---ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 00 0 0111 122222 23445555666678899999999888888888999999999999999999999999999
Q ss_pred ecCCCceeeeecc------ccc-----cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-CCCCC
Q 011224 353 NMKQDKYVHDLRE------HSK-----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREP 420 (490)
Q Consensus 353 d~~~~~~~~~~~~------~~~-----~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~ 420 (490)
|.+....+..+.. |.. .|+++.|+-+| +-+++|..+|.|.|||+++.+++..-. +..-+
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g---------L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG---------LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCc---------eeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 9988776655432 222 48999998876 368999999999999999988876543 23468
Q ss_pred EEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 421 VYSLAFSPTG--EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 421 v~~l~~spdg--~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
|..+.|.+.+ ..|+|. ....++||+-.+|+....+..-..++.+|+-|++-++.+|-.+.-+..|
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 9999998763 445543 3468999999999998888776779999999999888888777665443
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.4e-13 Score=136.35 Aligned_cols=212 Identities=13% Similarity=0.136 Sum_probs=145.4
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeC---CCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEE
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
..|.+||..+.....+..|...+.+.+|+|+|+.|+..+. +..|.+||+.++...
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------------------- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------------------- 239 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------------------
Confidence 4788888888777777888899999999999998877653 457888888765421
Q ss_pred EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCCe--EEEEecCCCceeeeeccccccEEEEEEc
Q 011224 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 300 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
.+..+.+.+.+.+|+|||+.|+ +.+.++. |.+||+.++.. ..+..+........|+
T Consensus 240 --------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s 298 (435)
T PRK05137 240 --------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS 298 (435)
T ss_pred --------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc
Confidence 1122334566789999998765 5566665 66778877654 3354455556778999
Q ss_pred CCCCCCCCCCCcEEEEEEE-CCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEcCCC
Q 011224 377 PTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEG 450 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---g~i~iw~~~~~ 450 (490)
|+|. .|+..+ .+| .|.+||+..+.. ..+..+...+....|||||++|+..+.+ ..|.+|++.++
T Consensus 299 pDG~---------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 299 PDGS---------QIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCC---------EEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 9986 333333 333 688888876544 3444344556778999999999876643 36888888655
Q ss_pred eEEEEEecCCCEEEEEECCCCCEEEEEECC------CcEEEEEe
Q 011224 451 KIVKTYTGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDF 488 (490)
Q Consensus 451 ~~~~~~~~~~~v~~~~~~~~g~~la~~~~d------~~v~v~~~ 488 (490)
.. ..+.....+..++|+|||+.|+....+ ..+.++++
T Consensus 369 ~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 369 GE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 43 334333346788999999988876543 24666665
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.9e-13 Score=134.69 Aligned_cols=216 Identities=14% Similarity=0.185 Sum_probs=140.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEE-eCCC--eEEEEEccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~--~v~iwd~~~~ 274 (490)
...+.+.+|||||+.|+..+. +..+++|+..+.....+....+.+..+.|+|+|+.|+.. +.++ .|.+||+.++
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 356889999999999886543 457899998765444444344445578999999988754 4344 4667777654
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC-CeEEEE-
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIW- 352 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-g~i~iw- 352 (490)
... .+..+...+....|+|||+.|+..+.+ +...||
T Consensus 278 ~~~------------------------------------------~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~ 315 (429)
T PRK03629 278 QIR------------------------------------------QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYK 315 (429)
T ss_pred CEE------------------------------------------EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEE
Confidence 321 111223346678999999988777654 444555
Q ss_pred -ecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC--CcEEEEeCCCCeEEEEeeCCCCCEEEEEECCC
Q 011224 353 -NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 353 -d~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 429 (490)
++.++.. ..+...........|+|+|. .+++++..+ ..|.+||+.++... .+... .......|+||
T Consensus 316 ~d~~~g~~-~~lt~~~~~~~~~~~SpDG~--------~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpD 384 (429)
T PRK03629 316 VNINGGAP-QRITWEGSQNQDADVSSDGK--------FMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPN 384 (429)
T ss_pred EECCCCCe-EEeecCCCCccCEEECCCCC--------EEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCC
Confidence 6655543 33333344456788999986 233333333 35888999877643 33322 22456789999
Q ss_pred CCEEEEEeCCCc---EEEEEcCCCeEEEEEec-CCCEEEEEECCC
Q 011224 430 GEYLASGSLDKS---MHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 470 (490)
Q Consensus 430 g~~l~s~s~dg~---i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~ 470 (490)
|++|+.++.++. +.++++ +|.....+.. .+.+..++|+|-
T Consensus 385 G~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 385 GTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCCC
Confidence 999999887764 677777 4555555544 456888999983
No 223
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.65 E-value=1.7e-14 Score=127.48 Aligned_cols=326 Identities=18% Similarity=0.282 Sum_probs=215.7
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
..++||.+.|++...-|...-+.+.+.|.++|||--.+.... .+........+++++.++++...
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~---------------wpsI~~~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY---------------WPSIYHYMPSPCSAMEYVSESRR 82 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc---------------CchhhhhCCCCceEeeeeccceE
Confidence 457899999999999998888999999999999953221110 01111122467999999999999
Q ss_pred EEEEeCCCeEEEEECCCc-----eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe-EE
Q 011224 216 LATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LD 289 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~ 289 (490)
|+.|-.+|++.-+..... .......|...|..+-|+-...++++.+.|+.+.---.+.+.....+.....++ +.
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 999999999998875432 223446799999999999888999999999876544444444443333222111 00
Q ss_pred EEccCCceEEEEcCCCeEEEEEcC--CCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce-eeeeccc
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH 366 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~ 366 (490)
.+.. ....+...+.+....+. .-.++..+.+|.+.+.+++|.|...++.+|..|..+.+||+-..+- ...+.+|
T Consensus 163 ~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 163 FDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred eeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 1111 12233344455444443 3457888999999999999999999999999999999999865543 4567788
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE---E--------------------------eeCC
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY---S--------------------------LNGH 417 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~---~--------------------------~~~h 417 (490)
...+..+.+.+... .|.+++.||.|.+|++...+... . +..|
T Consensus 240 ~~kV~~l~~~~~t~---------~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h 310 (404)
T KOG1409|consen 240 NDKVQALSYAQHTR---------QLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQH 310 (404)
T ss_pred hhhhhhhhhhhhhe---------eeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhh
Confidence 88888877666543 68899999999999986533210 0 0001
Q ss_pred -----CCCEEEEEECCCCCEEEEEeCCCcEEEEE--------cCCCeEEEEE-ecCCCEEEEEECCCCCEEEEEECCCcE
Q 011224 418 -----REPVYSLAFSPTGEYLASGSLDKSMHIWS--------LKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 418 -----~~~v~~l~~spdg~~l~s~s~dg~i~iw~--------~~~~~~~~~~-~~~~~v~~~~~~~~g~~la~~~~d~~v 483 (490)
...|...+-+ ......+-+..-.+++-+ ... ..+.++ ..+.+|+.+-+...-..|++++.|+.|
T Consensus 311 ~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetlglLvTsG~~Rvi 388 (404)
T KOG1409|consen 311 HCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVI 388 (404)
T ss_pred hhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEEEhhhhccceeecCCceEE
Confidence 0112111111 111222223333344433 322 112222 235678888888888899999999999
Q ss_pred EEEEeeC
Q 011224 484 CVLDFRM 490 (490)
Q Consensus 484 ~v~~~~~ 490 (490)
.+||+|.
T Consensus 389 ~iwd~~~ 395 (404)
T KOG1409|consen 389 KIWDVRS 395 (404)
T ss_pred EEEechh
Confidence 9999873
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=6.8e-14 Score=138.43 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=142.6
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC---CeEEEEEccCcceeEeeeeeccCeEEEEccCCceEE
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
..|.+||..+.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------- 242 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------- 242 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---------------------
Confidence 46889998877666677788889999999999998877643 358888876654211
Q ss_pred EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCC--eEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 300 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
+..+.+...+++|+|||+.|+ +.+.+| .|.+||+.++... .+..+........|+
T Consensus 243 ---------------------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s 300 (433)
T PRK04922 243 ---------------------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA 300 (433)
T ss_pred ---------------------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEEC
Confidence 111222344689999998765 555555 5899999877643 344444455678999
Q ss_pred CCCCCCCCCCCcEEEEEEECCCc--EEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEEcCCCe
Q 011224 377 PTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 451 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg---~i~iw~~~~~~ 451 (490)
|+|. .++++...+|. |.++++.+++.. .+..+......++|||||++|+..+.++ .|.+|++.+++
T Consensus 301 pDG~--------~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 301 PDGK--------SIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 9986 23334334555 666677666532 2322333445789999999998765443 69999998887
Q ss_pred EEEEEecCCCEEEEEECCCCCEEEEEECC---CcEEEEEe
Q 011224 452 IVKTYTGNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 488 (490)
Q Consensus 452 ~~~~~~~~~~v~~~~~~~~g~~la~~~~d---~~v~v~~~ 488 (490)
.. .+........++|+|+|++|+..+.+ ..|.++++
T Consensus 372 ~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 372 VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 65 33333345678999999988876553 34666654
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.5e-13 Score=134.59 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=144.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCCe--EEEEEccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVWDVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~--v~iwd~~~~ 274 (490)
...+.+.+|+|||+.|+..+. +..|++|++.+.....+..+.+.+...+|+|+|+.|+ +.+.++. |.+||+.++
T Consensus 201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 457999999999999888764 4689999988766666667777888999999998875 5555554 555565544
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CC--eEEE
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 351 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg--~i~i 351 (490)
.. ..+..+.+......|+|||+.|+..+. +| .|.+
T Consensus 281 ~~------------------------------------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 281 TT------------------------------------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ce------------------------------------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEE
Confidence 32 122233444567899999998887764 33 5778
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC-C--CcEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-D--STVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
||+.++.. ..+......+....|+|+|. .|+..+. . ..|.+||+..+.. ..+. ....+..+.|+|
T Consensus 319 ~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp 386 (435)
T PRK05137 319 MNADGSNP-RRISFGGGRYSTPVWSPRGD---------LIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP 386 (435)
T ss_pred EECCCCCe-EEeecCCCcccCeEECCCCC---------EEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC
Confidence 88766543 33333344566788999986 3444333 2 3688888765443 3332 223467889999
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCeEEEEEecCCCEEEEEECCC
Q 011224 429 TGEYLASGSLD------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 470 (490)
Q Consensus 429 dg~~l~s~s~d------g~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~ 470 (490)
||++|+..+.+ ..|.++++..+.. ..+...+.+...+|+|-
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCCCccCcccCCC
Confidence 99998765542 2578888866554 44444555788899884
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=7.2e-14 Score=137.82 Aligned_cols=206 Identities=20% Similarity=0.224 Sum_probs=136.7
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC---CeEEEEEccCcceeEeeeeeccCeEEEEccCCceEE
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
..|.++|..+.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------- 234 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------- 234 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE---------------------
Confidence 46777787776656666788899999999999998876642 358888887654211
Q ss_pred EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEEec--CCCceeeeeccccccEEEEEEc
Q 011224 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNM--KQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 300 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~--~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
+....+.+.+++|+|||+.|+ +.+.+|...||.+ .++. ...+..+........|+
T Consensus 235 ---------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS 292 (427)
T PRK02889 235 ---------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS 292 (427)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc
Confidence 111123345789999998876 5677887777754 3333 34454444555678899
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEEeC--CCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEEcCCCe
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 451 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg---~i~iw~~~~~~ 451 (490)
|+|. .+++++..+|...||.+ ..+.. ..+..+.......+|||||++|+..+.++ .|.+|++.+++
T Consensus 293 pDG~--------~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 293 PDGR--------SIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred CCCC--------EEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCC
Confidence 9986 23444444566667654 44432 22222223345689999999998776554 69999998887
Q ss_pred EEEEEecCCCEEEEEECCCCCEEEEEECCC
Q 011224 452 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 452 ~~~~~~~~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
.... ........++|+|+|+.|+.++.++
T Consensus 364 ~~~l-t~~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 364 VTAL-TDTTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred eEEc-cCCCCccCceECCCCCEEEEEEecC
Confidence 5433 3333456789999999988876544
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.9e-13 Score=132.51 Aligned_cols=212 Identities=12% Similarity=0.166 Sum_probs=140.6
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEe---CCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEE
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
..|.+||..+.....+..+...+...+|+|+|+.|+..+ .+..+.+|++.+++...
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------- 237 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE---------------------
Confidence 378889988766666667778899999999999887654 23467777776553211
Q ss_pred EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEE-eCCC--eEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 300 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
+..+.+ .+..++|+|||+.|+.. +.+| .|.+||+.++.... +..+...+....|+
T Consensus 238 ------------------l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS 295 (429)
T PRK03629 238 ------------------VASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF 295 (429)
T ss_pred ------------------ccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC
Confidence 111222 23457999999988754 4455 58889998876543 33344567788999
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEE--eCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCe
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGK 451 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---g~i~iw~~~~~~ 451 (490)
|+|. .++++...++...|| |+..+.. ..+..+...+...+|||||++|+..+.+ ..|.+|++.++.
T Consensus 296 PDG~--------~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 296 PDSQ--------NLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCCC--------EEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 9986 233333344554555 6665543 3343344456678999999999876543 358899998886
Q ss_pred EEEEEecCCCEEEEEECCCCCEEEEEECCCc---EEEEE
Q 011224 452 IVKTYTGNGGIFEVCWNKEGDKIAACFANHT---VCVLD 487 (490)
Q Consensus 452 ~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~---v~v~~ 487 (490)
.. .+.........+|+|||+.|+.++.++. +.+++
T Consensus 367 ~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 367 VQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred eE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 54 3333223457889999999999887765 44444
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.6e-13 Score=135.88 Aligned_cols=214 Identities=17% Similarity=0.214 Sum_probs=140.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCC--eEEEEEccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~ 274 (490)
...+.+.+|+|||+.|+..+.. ..|++|+..+.....+..+.+...+++|+|+|+.|+ +.+.++ .|.+||+.++
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 3468899999999999987744 469999987655555555555666889999998775 445555 4777776654
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCe--EEE
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVT--AKI 351 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~--i~i 351 (490)
... .+..+......++|+|||+.|+.++. +|. |.+
T Consensus 283 ~~~------------------------------------------~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 283 QLT------------------------------------------RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYR 320 (433)
T ss_pred CeE------------------------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 321 12223334456899999998887764 444 566
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
+++.++... .+.........++|+|+|. .|+..+ .++ .|.+||+.+++.. .+. +........|+|
T Consensus 321 ~dl~~g~~~-~lt~~g~~~~~~~~SpDG~---------~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp 388 (433)
T PRK04922 321 VAASGGSAE-RLTFQGNYNARASVSPDGK---------KIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP 388 (433)
T ss_pred EECCCCCeE-EeecCCCCccCEEECCCCC---------EEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC
Confidence 666665432 2222333445689999986 344333 222 6999999877654 343 223456789999
Q ss_pred CCCEEEEEeCC---CcEEEEEcCCCeEEEEEe-cCCCEEEEEECC
Q 011224 429 TGEYLASGSLD---KSMHIWSLKEGKIVKTYT-GNGGIFEVCWNK 469 (490)
Q Consensus 429 dg~~l~s~s~d---g~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~ 469 (490)
||++|+..+.+ +.|.++++.. .....+. +.+.+..++|+|
T Consensus 389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 99988776653 4688888754 4444443 345677889987
No 229
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.62 E-value=4.2e-14 Score=125.02 Aligned_cols=267 Identities=20% Similarity=0.400 Sum_probs=176.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc------eeEEecCCC------------CCEEEEEecCCCC--EEEEE
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHK------------GPIFSLKWNKKGD--YLLTG 260 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~------~~~~~~~h~------------~~V~~l~~~~~~~--~l~s~ 260 (490)
..-|.++.|...|.+|++|..+|.|-++..+.. ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 456899999999999999999999999974422 223455554 3578899998765 57778
Q ss_pred eCCCeEEEEEccCcceeE-eee----eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEc
Q 011224 261 SCDKTAIVWDVKTEEWKQ-QFE----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWD 334 (490)
Q Consensus 261 s~D~~v~iwd~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~ 334 (490)
..|++|++|-+....... .+. ...+.+..+.. .+.+..+-.+- -.|.+.+. +|...|+++.++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----PVEGRHDLEVE------ASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeec-----eeeccccceee------eeeeeeccccceeEeeeeeec
Confidence 889999999876543221 000 00000111100 01111111110 12333443 688889999999
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCce---eeeeccc-----cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC
Q 011224 335 PTGSLLASCSDDVTAKIWNMKQDKY---VHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406 (490)
Q Consensus 335 ~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 406 (490)
.|+..++++ +|=.|.+|.+.-... +..++.+ ...|++..|+|... ++++-.+.-|+|++-|++
T Consensus 174 sD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c--------n~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 174 SDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC--------NVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred CccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc--------cEEEEecCCCcEEEeech
Confidence 999988876 577899998753221 1222221 23466667777543 578888899999999998
Q ss_pred CCeE------EEEee----------CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc-CCCeEEEEEecCC---------
Q 011224 407 LGKL------LYSLN----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSL-KEGKIVKTYTGNG--------- 460 (490)
Q Consensus 407 ~~~~------~~~~~----------~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~-~~~~~~~~~~~~~--------- 460 (490)
...+ ++... .--..|.++.|+++|+||++-.. -+|++||+ ...+.+.+++-+.
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 4321 11111 11245888999999999998543 58999999 4566666665431
Q ss_pred ----CE---EEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 461 ----GI---FEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 461 ----~v---~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.| +.++|+.++.++++|+.+..++|+++
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 22 57999999999999999999999984
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.6e-13 Score=133.88 Aligned_cols=217 Identities=19% Similarity=0.285 Sum_probs=139.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcce
Q 011224 201 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~ 276 (490)
...+.+.+|+|||+.|+..+.. ..|.+|++.+.....+....+.+....|+|+|+.|+ +.+.++...||.+...
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-- 272 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD-- 272 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC--
Confidence 4568899999999999887653 469999987665555554556667899999999876 5667777666643211
Q ss_pred eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEec-
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNM- 354 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~iwd~- 354 (490)
.+. ...+..+.+......|+|||+.|+..+. +|...||.+
T Consensus 273 -------------------------------------~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 273 -------------------------------------GSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred -------------------------------------CCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 010 1122233344556789999998876654 466677755
Q ss_pred -CCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC---cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC
Q 011224 355 -KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 430 (490)
Q Consensus 355 -~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg 430 (490)
.++.. ..+...........|+|+|. +|+..+.++ .|.+||+.+++... +... ......+|+|||
T Consensus 315 ~~~g~~-~~lt~~g~~~~~~~~SpDG~---------~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg 382 (427)
T PRK02889 315 ASGGAA-QRVTFTGSYNTSPRISPDGK---------LLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNG 382 (427)
T ss_pred CCCCce-EEEecCCCCcCceEECCCCC---------EEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCC
Confidence 34332 22222223344678999986 455444443 69999998876543 3322 234678999999
Q ss_pred CEEEEEeCCC---cEEEEEcCCCeEEEEEec-CCCEEEEEECCC
Q 011224 431 EYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 470 (490)
Q Consensus 431 ~~l~s~s~dg---~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~ 470 (490)
++|+.++.++ .+.+.++ +|.....+.. .+.+...+|+|-
T Consensus 383 ~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 383 RYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 9988776543 3555555 4655555543 455788899984
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.9e-15 Score=136.91 Aligned_cols=215 Identities=23% Similarity=0.366 Sum_probs=158.3
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee-eeeccCeEEEEcc---CCceEEEEcCCCeEEE
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWR---NNVSFATSSTDNMIYV 309 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~ 309 (490)
+...+.||++-|.+|.|+.+|.+|++||.|-.+.|||+-..+....+ .+|...+.++.|. ++..++++..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34568899999999999999999999999999999998776655544 5788889998884 5678889999999999
Q ss_pred EEcCC----------CcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCce-------eeee---ccccc
Q 011224 310 CKIGE----------NRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-------VHDL---REHSK 368 (490)
Q Consensus 310 ~~~~~----------~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~-------~~~~---~~~~~ 368 (490)
+++.. ..+...+..|...|..++-.|++ +.|.++++||+|+-+|++.... ...+ ...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99873 23455667899999999999999 6789999999999999986311 1111 11112
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC--------Ce----------EEEEe-eCCC-----------
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------GK----------LLYSL-NGHR----------- 418 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--------~~----------~~~~~-~~h~----------- 418 (490)
...++..+|... .+||.|+.|-..++||.+. +. ++..+ .+|.
T Consensus 202 elk~ltisp~rp--------~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~ 273 (758)
T KOG1310|consen 202 ELKCLTISPSRP--------YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI 273 (758)
T ss_pred eeeeeeecCCCC--------ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence 356777777653 5899999999999999431 11 12111 2232
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 419 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
..++-+.|+|+|.-|...=..-.|++|++..++....+
T Consensus 274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 12567899999965544333347999999887755444
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=2e-13 Score=118.64 Aligned_cols=118 Identities=29% Similarity=0.641 Sum_probs=92.1
Q ss_pred CCCCeeEEEEcCCCCEEEEE--eCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC---CC
Q 011224 324 HQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DS 398 (490)
Q Consensus 324 h~~~v~~v~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~---dg 398 (490)
..++|.+++|+|+|+.||.. ..++.|.|||++ .+.+..+. ...+..+.|+|+|. +|++|+. .|
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~---------~l~~~g~~n~~G 125 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR---------FLVLAGFGNLNG 125 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC---------EEEEEEccCCCc
Confidence 34579999999999987554 467799999997 55555553 45678999999997 6666654 46
Q ss_pred cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeC------CCcEEEEEcCCCeEEEEE
Q 011224 399 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL------DKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~------dg~i~iw~~~~~~~~~~~ 456 (490)
.|.+||+++.+.+.... |. .++.++|||||++|++++. |+.++||+.. |+++...
T Consensus 126 ~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 126 DLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 79999999888887765 33 4789999999999998764 7889999984 6666543
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=9.8e-13 Score=133.94 Aligned_cols=251 Identities=16% Similarity=0.211 Sum_probs=172.8
Q ss_pred ecccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCC---c-----eeEEecCCCCCEEEEEecCCCCEEEEEeCCC
Q 011224 194 KGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG---D-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 264 (490)
Q Consensus 194 ~~~~~~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~---~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 264 (490)
..|...|+..|..++.++. +.+|+||+.||+|++|+... . ...++..-.+.+.++.+.+.+++++.++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 3455677888888888765 49999999999999999532 1 1223343567889999999999999999999
Q ss_pred eEEEEEccCcce-------eEeeeee-ccCeEEEE-c--cCC-ceEEEEcCCCeEEEEEcCCCcceeEec--CCCCCeeE
Q 011224 265 TAIVWDVKTEEW-------KQQFEFH-SGPTLDVD-W--RNN-VSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNC 330 (490)
Q Consensus 265 ~v~iwd~~~~~~-------~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~ 330 (490)
.|++..+.-... ......+ .+.+..+. + ... ..++.+..-+.|..||.+.......+. ...|.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998865211 1111111 12333332 2 122 256667777888999987765443332 34578999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCCCC
Q 011224 331 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELG 408 (490)
Q Consensus 331 v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~ 408 (490)
++.+|-+.++++|+..|.+.+||++-+.++.... .+..++..+..+|.... ....+++++ ..+.|.+|++.+|
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~-----~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ-----ESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC-----CceEEEecccCCCceeeeecccC
Confidence 9999999999999999999999999888776654 34466777776665321 112445555 6889999999988
Q ss_pred eEEEEeeCC-------------------CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 409 KLLYSLNGH-------------------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 409 ~~~~~~~~h-------------------~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
.+.+.+-.. .-+.....+..-+.++.+|+.|..|+.||...
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 765554322 11112233333456889999999999999754
No 234
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.57 E-value=6.5e-12 Score=116.93 Aligned_cols=313 Identities=16% Similarity=0.260 Sum_probs=203.9
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
-.-++..++|||.|++|++...-+ |.+|.-.... .+..+. ...|..+.|||.++||.+-+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~-------------~l~~~~------~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKA-------------KLVRFR------HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchh-------------heeeee------cCCceecccCcccceeeeec
Confidence 344688899999999999876654 8889744321 111111 24699999999999999876
Q ss_pred CCC---------------eEEEEECCCc-eeEEecCCCCC--EE-EEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 221 YDG---------------QARIWSTNGD-LKCTLSKHKGP--IF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 221 ~dg---------------~i~iw~~~~~-~~~~~~~h~~~--V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
..+ .+.+||..++ ++..+..-..+ .+ -+.|+-+..+++--. ...+.|+++ +..... ..
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~-~p 167 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEE-HP 167 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCcccc-Cc
Confidence 544 4899997654 44455554444 55 678888887765332 246899986 433211 11
Q ss_pred ee---ccCeEEEEccCC---ceEEE-----EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe------
Q 011224 282 FH---SGPTLDVDWRNN---VSFAT-----SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS------ 344 (490)
Q Consensus 282 ~~---~~~~~~~~~~~~---~~~~~-----~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~------ 344 (490)
.+ ...+....+.+. ..++. ....+++++|.+..+.++.+-.-....-..+.|++.|+++..--
T Consensus 168 ~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 168 FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 11 122333333322 22222 24567889998887766544322233335688999888765321
Q ss_pred -----CCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC
Q 011224 345 -----DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 419 (490)
Q Consensus 345 -----~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 419 (490)
....+.|+++....+.... ...++|..++|.|.+. +..+++|..+-.+.++|++.. .++.+. ..
T Consensus 248 nKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~-------~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~ 316 (561)
T COG5354 248 NKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSS-------RFAVISGYMPASVSVFDLRGN-LRFYFP--EQ 316 (561)
T ss_pred ccceeccceEEEEeecccccceec-cccccceeeeecccCC-------ceeEEecccccceeecccccc-eEEecC--Cc
Confidence 1235677777643332222 4578999999999886 346777889999999999855 555443 23
Q ss_pred CEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEE-EEecCCCEEEEEECCCCCEEEEEE------CCCcEEEEEe
Q 011224 420 PVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVK-TYTGNGGIFEVCWNKEGDKIAACF------ANHTVCVLDF 488 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~d---g~i~iw~~~~~~~~~-~~~~~~~v~~~~~~~~g~~la~~~------~d~~v~v~~~ 488 (490)
.=+.+.|||.+++++.++.| |.|.+|+.....++. .+.+ ....-+.|+|||.++-+.. .|..|.|||+
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 44778999999999998876 689999988765544 4433 2345567999999877663 2567899986
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=2.5e-13 Score=136.27 Aligned_cols=221 Identities=18% Similarity=0.273 Sum_probs=162.3
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC-----eE
Q 011224 214 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----TL 288 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-----~~ 288 (490)
.+++++..-+.+..-....+....+..+ |....+.-....++.+..+..+.+||...+............ ..
T Consensus 62 ~~~v~~~~~~~v~~~~~~~~~~~~~s~w---i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~ 138 (967)
T KOG0974|consen 62 GKIVTCAKSDEVYVKEASNQIIERFSDW---IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI 138 (967)
T ss_pred ceEEEEEeecceeecchhhhhhhhcccc---ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence 3455555444444433332222223222 333445556678888899999999998776544333221111 11
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee-eecccc
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHS 367 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~ 367 (490)
...-.....+++++.-+.|.+|+.....+-..+.||.+.|..+.|+.||+++++.|+|.++|+|++.+.+... ...+|.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs 218 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS 218 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence 1122345567788888999999887544333688999999999999999999999999999999999987765 667899
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-CCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
..+..++|.|. .++|++.|.+.++|+.. +..+..+.+|. ..|..++.++....++|++.|+.+++|+
T Consensus 219 aRvw~~~~~~n-----------~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 219 ARVWACCFLPN-----------RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred ceeEEEEeccc-----------eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 99999999886 48999999999999765 55556777775 4699999999999999999999999999
Q ss_pred cCC
Q 011224 447 LKE 449 (490)
Q Consensus 447 ~~~ 449 (490)
+..
T Consensus 287 l~~ 289 (967)
T KOG0974|consen 287 LNG 289 (967)
T ss_pred hhc
Confidence 864
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=9e-13 Score=116.02 Aligned_cols=271 Identities=17% Similarity=0.232 Sum_probs=180.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 206 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
-.+|||+|+++++++.- .+.|-|.+.-....+..--..|.-+.|..+..++ ...+.|+.|.+|++...++...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46799999999998865 5666666543222111113456778888877654 456778899999999999999998888
Q ss_pred cCeEEEEccCCc--eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCe---EEEEecCCCce
Q 011224 285 GPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT---AKIWNMKQDKY 359 (490)
Q Consensus 285 ~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~---i~iwd~~~~~~ 359 (490)
.+...+.|.++. .+.++.-+-.|.+|.+.+.+.... .--...+..++|+|||++.+.++.-.. +.|..-+....
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 888999997665 345677889999999987654322 112234577888898888776654211 11110000111
Q ss_pred eeeecccc--------------------------------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 360 VHDLREHS--------------------------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 360 ~~~~~~~~--------------------------------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
+..+.... -.+..+.|+|.+. +|+.|+.|+.+|+.+--+
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~q---------flavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQ---------FLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccc---------eEEeeccchhhhhhceee
Confidence 11111111 2345566666554 799999999998864211
Q ss_pred CeEE------------------------------------------------------------EEee------CCCCCE
Q 011224 408 GKLL------------------------------------------------------------YSLN------GHREPV 421 (490)
Q Consensus 408 ~~~~------------------------------------------------------------~~~~------~h~~~v 421 (490)
.+.. ..++ .-.-.+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 1100 0000 001235
Q ss_pred EEEEECCCCCEEEEEeC--CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 422 YSLAFSPTGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~--dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.-++||+|..|+||-.. -+.+.+||+..-++...+.....|....|+|.-..|+.|.....+.+|-
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 67899999999998654 3689999999888776676677899999999999999887776777774
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.5e-12 Score=121.14 Aligned_cols=281 Identities=16% Similarity=0.198 Sum_probs=198.4
Q ss_pred ccccceeEEEECCCCCEE-EEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEE
Q 011224 140 GHTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 218 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l-~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 218 (490)
+|...-+.|..+|||+|+ |||..--.|++||+.+-. ++ +..|.. +..|...-.+.|-..++.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------LK-FERhlD--ae~V~feiLsDD~SK~v~ 111 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------LK-FERHLD--AEVVDFEILSDDYSKSVF 111 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--------------ee-eeeccc--ccceeEEEeccchhhheE
Confidence 366667889999999964 567788899999986521 21 122221 344555555666666666
Q ss_pred EeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC-ce
Q 011224 219 GSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VS 297 (490)
Q Consensus 219 g~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 297 (490)
--.|..|-+-...|.... +. -...-..++++.-.--|+.++....|.-.|+..|.+...|....+.+..+...+- ..
T Consensus 112 L~~DR~IefHak~G~hy~-~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 112 LQNDRTIEFHAKYGRHYR-TR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL 189 (703)
T ss_pred eecCceeeehhhcCeeee-ee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence 667777776654432211 10 1122345666654444555666667888999999999999888888888887654 45
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEec------CCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee-cc
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFA------GHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-RE 365 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~------~h~~-----~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~ 365 (490)
+++|+.+|.|-.||.+....+..+. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..- ..
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 5666779999999988766554443 2323 4999999999999999999999999999998876432 23
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 445 (490)
..-+|..+.|.+.+. +..++|. ....++|||-.+|+....+... ..++.+++-|++.++++|-.++.+..|
T Consensus 270 ~e~pi~~l~~~~~~~-------q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQ-------QNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred CccceeeecccccCC-------CceEEec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence 345788899977632 2245554 3467999999999998887744 459999999999999999988887777
Q ss_pred EcC
Q 011224 446 SLK 448 (490)
Q Consensus 446 ~~~ 448 (490)
=+.
T Consensus 341 yiP 343 (703)
T KOG2321|consen 341 YIP 343 (703)
T ss_pred Ecc
Confidence 554
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.3e-11 Score=116.32 Aligned_cols=272 Identities=17% Similarity=0.371 Sum_probs=164.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEE-----eCC-----CeEEEEE
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTG-----SCD-----KTAIVWD 270 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~-----s~D-----~~v~iwd 270 (490)
.+....++|++|++++.+. +..++|++.... ...+.. ...++.|.|+|.+++|.+- ..+ .-+++|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 4467788999999887754 578899986544 322222 2278999999999998762 222 3467999
Q ss_pred ccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCc----------------------------------
Q 011224 271 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---------------------------------- 316 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---------------------------------- 316 (490)
+.++.....+......-....|..+..++.=-..+.+++++....+
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence 8884333222221111112222221111111111112222221100
Q ss_pred ---ceeEec----C-C---------CCCeeEEEEcCCCCE-E--EEEeCCC---------eEEEEecCCCceeeeecccc
Q 011224 317 ---PIKTFA----G-H---------QGEVNCVKWDPTGSL-L--ASCSDDV---------TAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 317 ---~~~~~~----~-h---------~~~v~~v~~~~~~~~-l--~s~~~dg---------~i~iwd~~~~~~~~~~~~~~ 367 (490)
.++.+. + | ...-..+.|++-|.- | ++..-|. ++.+.++....++..+. ..
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~ 270 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KE 270 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CC
Confidence 011110 0 0 011124556655542 2 2222232 45666655333333332 36
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC---CcEEE
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHI 444 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---g~i~i 444 (490)
++|+++.|+|.+. +..++.|..-..+.|||++ +.+++.+. .++-+++-|+|.|++|+.+|.+ |.|-|
T Consensus 271 GPVhdv~W~~s~~-------EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 271 GPVHDVTWSPSGR-------EFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred CCceEEEECCCCC-------EEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEE
Confidence 8999999999986 3456778888899999987 67777765 4677999999999999988865 78999
Q ss_pred EEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEEC------CCcEEEEEe
Q 011224 445 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA------NHTVCVLDF 488 (490)
Q Consensus 445 w~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~------d~~v~v~~~ 488 (490)
||+.+.+++..+... ..+-+.|+|||.++++|.. |..++||+.
T Consensus 341 wDv~n~K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EeccchhhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 999998888776543 3456789999999988743 567899985
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.9e-12 Score=122.70 Aligned_cols=296 Identities=17% Similarity=0.272 Sum_probs=201.6
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCC--CCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
...+|++|+....++|.||.||.+++-.+.+......... .+.++. ......+|+..|.-+.|+.+.+.|.+..
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLs----mNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLS----MNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccc----hhhhhccCcceEEEEEeccccccccccC
Confidence 3468999999999999999999999999876554332221 111111 1223456789999999999999999999
Q ss_pred CCCeEEEEECCCcee---EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 221 YDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
.+|.|.||-+-...- ..-...++-|.+++|+.+|..++....||.|.+=.+...
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN----------------------- 147 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN----------------------- 147 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-----------------------
Confidence 999999998643321 123345677899999999999999999998776544322
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc-------e-e---eeeccc
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-------Y-V---HDLREH 366 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~-~---~~~~~~ 366 (490)
++|.- .+.|. ....+.|++|.+.++.+-..|.+.+||....- + + ..+...
T Consensus 148 ----------RIwgK-------eLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~ 208 (1189)
T KOG2041|consen 148 ----------RIWGK-------ELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNF 208 (1189)
T ss_pred ----------eecch-------hcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCC
Confidence 22221 11110 12357899999888888888999999875321 1 1 011122
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCC------
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLD------ 439 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d------ 439 (490)
...+..+.|.........|+ ...|+.+..+|.+.|..-.+. .++..-.+ -.|..+.|+++|.+||.+|.|
T Consensus 209 ~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred CccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence 33456667754333233333 346889999999988755433 23322222 457889999999999998865
Q ss_pred ---CcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 440 ---KSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 440 ---g~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.|++|.. -|+.+.++..++ .|++++|-..|-.+|.+- |+.|.+=++|
T Consensus 286 ~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIR 337 (1189)
T KOG2041|consen 286 TDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIR 337 (1189)
T ss_pred cccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeec
Confidence 36777765 477888887655 499999999998877765 5677776765
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=8e-12 Score=123.85 Aligned_cols=206 Identities=20% Similarity=0.248 Sum_probs=138.6
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC---CeEEEEEccCcceeEeeeeeccCeEEEEccCCceEE
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
..|.+++..+.....+..+...+...+|+|+|++|+.++.+ ..|++||+.++....
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------- 228 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------- 228 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------------------
Confidence 46778887766556666777789999999999998876543 368888876653211
Q ss_pred EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCC--eEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 300 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
+..+.+.+.+++|+|||+.|+ +.+.++ .|.+|++.++... .+..+........|+
T Consensus 229 ---------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s 286 (417)
T TIGR02800 229 ---------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS 286 (417)
T ss_pred ---------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC
Confidence 112233455688999998765 444444 5888898876543 333344444567888
Q ss_pred CCCCCCCCCCCcEEEEEEECCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC---cEEEEEcCCCe
Q 011224 377 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGK 451 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg---~i~iw~~~~~~ 451 (490)
|++. .++++....+ .|.++|+.+++. ..+..+...+..++|+|+|++|+.++.++ .|.+|++.++.
T Consensus 287 ~dg~--------~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 287 PDGK--------SIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCC--------EEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 8875 2334443344 577788876654 34444555677889999999999888776 79999998765
Q ss_pred EEEEEecCCCEEEEEECCCCCEEEEEECCC
Q 011224 452 IVKTYTGNGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 452 ~~~~~~~~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
.. .+.........+|+|+|+.|+.+..++
T Consensus 358 ~~-~l~~~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 358 ER-VLTDTGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred eE-EccCCCCCCCceECCCCCEEEEEEeCC
Confidence 43 333223345678999999888876654
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=2.5e-11 Score=116.21 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=172.3
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe-CCCe
Q 011224 146 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQ 224 (490)
Q Consensus 146 ~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~-~dg~ 224 (490)
..+.|+|||+++++++.||.|.++|+.+.+.. +.++. ......+++|+||++++++. ..+.
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v-------------~~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV-------------ATIKV-----GGNPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE-------------EEEE------SSEEEEEEE--TTTEEEEEEEETTE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEE-------------EEEec-----CCCcceEEEcCCCCEEEEEecCCCc
Confidence 34779999999999999999999999876522 22211 23467899999999998775 5899
Q ss_pred EEEEECCC-ceeEEecC-------CCCCEEEEEecCCCCEEEEEeCC-CeEEEEEccCcceeE-eeeeeccCeEEEEccC
Q 011224 225 ARIWSTNG-DLKCTLSK-------HKGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRN 294 (490)
Q Consensus 225 i~iw~~~~-~~~~~~~~-------h~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~ 294 (490)
+.++|... +....+.. ....+.++..+|....++..-.| +.|.+-|........ ..........+..|.+
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 99999765 33333322 23467788888888867666555 777777866543322 2222233445566655
Q ss_pred Cc-e-EEEEcCCCeEEEEEcCCCcceeEec----CCCCCeeEEEEcCC----------CCEEEEEeCCCeEEEEecCCCc
Q 011224 295 NV-S-FATSSTDNMIYVCKIGENRPIKTFA----GHQGEVNCVKWDPT----------GSLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 295 ~~-~-~~~~~~d~~i~~~~~~~~~~~~~~~----~h~~~v~~v~~~~~----------~~~l~s~~~dg~i~iwd~~~~~ 358 (490)
+. . +++....+.+-+++..+.+.+..+. .|.++...+ .||. +...++.-....+.+||....+
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred ccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 43 3 3445667788899988876655432 133333222 1222 2222222223355678888899
Q ss_pred eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE----ECCCcEEEEeCCCCeEEEEeeCCC-CCEEEEEECCCCCEE
Q 011224 359 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA----SFDSTVKLWDVELGKLLYSLNGHR-EPVYSLAFSPTGEYL 433 (490)
Q Consensus 359 ~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg----s~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~spdg~~l 433 (490)
.+.++...... .-++.+|++. ++... ...++|.++|.++.+.+.++.... ..+..+.|+++|+++
T Consensus 261 vv~~I~~~G~g-lFi~thP~s~---------~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 261 VVKTIPTQGGG-LFIKTHPDSR---------YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp EEEEEE-SSSS---EE--TT-S---------EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred EEEEEECCCCc-ceeecCCCCc---------cEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEE
Confidence 99988876666 6677788875 44444 556899999999998887775322 248999999999976
Q ss_pred EEEeC--CCcEEEEEcCCCeEEEEEe
Q 011224 434 ASGSL--DKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 434 ~s~s~--dg~i~iw~~~~~~~~~~~~ 457 (490)
..+.. ++.|.+||..+.++++.++
T Consensus 331 ~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 331 WVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEECCCcEEEEEEE
Confidence 54433 3479999999999998876
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=2e-12 Score=114.61 Aligned_cols=315 Identities=17% Similarity=0.310 Sum_probs=193.2
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccc--------cCCCCeEEEEEcCCC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--------EKSKDVTTLDWNGEG 213 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~V~~~~~s~~~ 213 (490)
..-|.++.|...|.+||||..+|.|.++.-..... +...+.. .+..|.. .....|..+.|.+++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------~ey~~~t--~fqshepEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------GEYNFQT--EFQSHEPEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc------cceeeee--eeeccCcccchhhhhhhhhhhhhceecCCC
Confidence 34588999999999999999999999997543211 1111111 1111111 123457888898865
Q ss_pred --CEEEEEeCCCeEEEEECCCc---e------------------eEE----------------ecCCCCCEEEEEecCCC
Q 011224 214 --TLLATGSYDGQARIWSTNGD---L------------------KCT----------------LSKHKGPIFSLKWNKKG 254 (490)
Q Consensus 214 --~~l~sg~~dg~i~iw~~~~~---~------------------~~~----------------~~~h~~~V~~l~~~~~~ 254 (490)
..++..+.|.+|++|.+... . ... -..|+--|.++.++.+.
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 46777889999999964210 0 000 12477778999999999
Q ss_pred CEEEEEeCCCeEEEEEccCcc-eeEeeee-------eccCeEEEEccC--CceEEEEcCCCeEEEEEcCCCcce----eE
Q 011224 255 DYLLTGSCDKTAIVWDVKTEE-WKQQFEF-------HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPI----KT 320 (490)
Q Consensus 255 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~----~~ 320 (490)
..++++. |-.|.+|++.-.. .-..... -...+.+..|++ ...|+-++..|+|+++|++..... +.
T Consensus 177 Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 8888764 7889999885322 1111111 112234444543 456888899999999999853221 11
Q ss_pred e------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC-CCceeeeecccc------------ccE---EE
Q 011224 321 F------------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHS------------KEI---YT 372 (490)
Q Consensus 321 ~------------~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~ 372 (490)
| .+--..|..+.|+++|+++++=.. -+|++||++ ..+++.++..|. ..| ..
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1 112245788999999999987643 589999984 445555554443 112 44
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE-EEEeeCCCCC--EEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREP--VYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~--v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
++|+-++. +++||+.....++++...|.. -.++.+.... ...+ ..-+.+.+++......+|
T Consensus 335 c~~sg~~~---------~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~---- 398 (433)
T KOG1354|consen 335 CSWSGNDS---------YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEIS---- 398 (433)
T ss_pred EEEcCCcc---------eEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCCCccccccc----
Confidence 67776654 789999999999999765543 2333322222 1111 011234444444332222
Q ss_pred CeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 450 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 450 ~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+..+.-...++..+|+|.-+.+|.+..+. +.+|
T Consensus 399 ---vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 399 ---VDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ---cchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 22233334578889999999999887663 4443
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=5.5e-13 Score=124.55 Aligned_cols=242 Identities=21% Similarity=0.289 Sum_probs=160.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc--e----eEEecCCCCCEEEEEe-----cCCCCEEEEEeCCCeEEEE
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--L----KCTLSKHKGPIFSLKW-----NKKGDYLLTGSCDKTAIVW 269 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~--~----~~~~~~h~~~V~~l~~-----~~~~~~l~s~s~D~~v~iw 269 (490)
+..+....++..|.+|+-.- ...+++|+..+. . ...+..-+++ ++-.| .|.+.-++.|-.-|.|.+.
T Consensus 123 sg~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P-~cHdfn~~~a~~~g~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 123 SGIVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSP-TCHDFNSFTATPKGLDLLIGFTTGQVQLI 200 (636)
T ss_pred ccceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCC-ceecccccccCCCCcceEEeeccCceEEe
Confidence 34566666777777776543 246788876531 1 1111122222 23333 3456678888888899998
Q ss_pred EccCcceeEeee----eeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEE
Q 011224 270 DVKTEEWKQQFE----FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 270 d~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 343 (490)
|+...++...|. .....+.++.|. .+..|+.+..++.+++++..... +-+ -.+-...+++..++..
T Consensus 201 dp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~------~~t--~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 201 DPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC------GAT--APSYQALKDGDQFAIL 272 (636)
T ss_pred cchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc------cCC--CCcccccCCCCeeEEe
Confidence 876644333222 223567788885 45678888888888888762111 000 0111223344444322
Q ss_pred eCCCeEEEEec-CCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEE
Q 011224 344 SDDVTAKIWNM-KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 422 (490)
Q Consensus 344 ~~dg~i~iwd~-~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~ 422 (490)
.|-. .+..++..+..-...|..++|+|+|. +||+.|.||.+||||..+.+++..++..-+...
T Consensus 273 -------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~---------~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL 336 (636)
T KOG2394|consen 273 -------TSKSKKTRNPVARWHIGEGSINEFAFSPDGK---------YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL 336 (636)
T ss_pred -------eeeccccCCccceeEeccccccceeEcCCCc---------eEEEEecCceEEEeeccHHHHHHHHHhhccceE
Confidence 1211 11233444444456888999999997 899999999999999998888877777778899
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEEC
Q 011224 423 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468 (490)
Q Consensus 423 ~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~ 468 (490)
|++|||||+|||+|+.|-.|.||.+..++++..-++|. .|..|+|.
T Consensus 337 CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 337 CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 99999999999999999999999999999998877654 58888887
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=2e-11 Score=122.89 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=156.3
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
+.|....+.-+.+.++.+..+..+-+||...+......+...... .....-+-++++.-++++|+.-
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------------l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------------LYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------------EEeEEEEeccCcEEEEEecccc
Confidence 445556777788899999999999999987654333222211110 1122334457777899999999
Q ss_pred CeEEEEECCCceeE-EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeE-eeeeeccCeEEEEccCCceEEE
Q 011224 223 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSFAT 300 (490)
Q Consensus 223 g~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
+.|.+|........ .+.+|.+.|+.+.|+-+|.+++++|.|+++|+|++.+.+... ....|...+....+.++ .+++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t 233 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIIT 233 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEE
Confidence 99999997643333 589999999999999999999999999999999999987665 56678888888888777 8999
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCC-CeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
.+.|-+.++|.... ..+..+.+|.+ .+..++..++...++|++.|+.+++|++..
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999996543 33447888875 699999999999999999999999999754
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.9e-11 Score=121.10 Aligned_cols=212 Identities=18% Similarity=0.257 Sum_probs=135.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCC--eEEEEEccCcc
Q 011224 202 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTEE 275 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~~ 275 (490)
..+...+|+|||++|+.+... ..|++|++.+.....+..+.+.+.+++|+|+++.|+ +.+.++ .|.+||+.++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 457888999999999987654 479999987665555555667778899999998776 444444 46666665543
Q ss_pred eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC-C--eEEEE
Q 011224 276 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-V--TAKIW 352 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-g--~i~iw 352 (490)
.. .+..+........|+|+|+.|+.++.. + .|.++
T Consensus 270 ~~------------------------------------------~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 270 LT------------------------------------------RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred EE------------------------------------------ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEE
Confidence 21 112222334457899999988766543 3 57777
Q ss_pred ecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC---cEEEEeCCCCeEEEEeeCCCCCEEEEEECCC
Q 011224 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 353 d~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 429 (490)
++.+++.. .+..+...+..+.|+|++. +|+.++.++ .|.+||+.++... .+... ......+|+|+
T Consensus 308 d~~~~~~~-~l~~~~~~~~~~~~spdg~---------~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spd 375 (417)
T TIGR02800 308 DADGGEVR-RLTFRGGYNASPSWSPDGD---------LIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPN 375 (417)
T ss_pred ECCCCCEE-EeecCCCCccCeEECCCCC---------EEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCC
Confidence 87766533 3333445567788999886 455555554 7888998875442 23222 23455789999
Q ss_pred CCEEEEEeCCC---cEEEEEcCCCeEEEEEec-CCCEEEEEEC
Q 011224 430 GEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWN 468 (490)
Q Consensus 430 g~~l~s~s~dg---~i~iw~~~~~~~~~~~~~-~~~v~~~~~~ 468 (490)
|++|+.++.++ .+.+.+. +|+....+.. .+.+..++|+
T Consensus 376 g~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 376 GRMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred CCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCCC
Confidence 99988776654 3555554 3444444432 3445556663
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.9e-11 Score=118.78 Aligned_cols=222 Identities=17% Similarity=0.159 Sum_probs=136.7
Q ss_pred CeEEEEEcCCCCE---EEEEeCCC--eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeC-CC----eEEEEEcc
Q 011224 203 DVTTLDWNGEGTL---LATGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK----TAIVWDVK 272 (490)
Q Consensus 203 ~V~~~~~s~~~~~---l~sg~~dg--~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~----~v~iwd~~ 272 (490)
.+..-+|||||+. +++...+| .|.+.++.+.....+....+.....+|+|+|++|+..+. +| .+.+|++.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 4566799999974 22444444 566667776555555555566677899999998876542 22 22223332
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CCCeEEE
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKI 351 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~i 351 (490)
.+. .+.+.....++.+.....+|+|||+.|+..+ .+|...|
T Consensus 266 ~g~--------------------------------------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 266 TGA--------------------------------------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred cCC--------------------------------------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 210 0111112222223345689999999877665 4676666
Q ss_pred Eec--CC-CceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC--CcEEEEeCCCCeEEEEeeCCCCCEEEEEE
Q 011224 352 WNM--KQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 352 wd~--~~-~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 426 (490)
|.+ .. +.....+......+....|+|+|. .+++++..+ ..|.+||+.+++.. .+......+....|
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~--------~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~w 378 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK--------KIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSW 378 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCC--------EEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEE
Confidence 643 32 222333444445667889999986 233333333 46999999888764 33333345678999
Q ss_pred CCCCCEEEEEeC---CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCC
Q 011224 427 SPTGEYLASGSL---DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG 471 (490)
Q Consensus 427 spdg~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g 471 (490)
+|||++|+..+. ...|.+|++.+++........+.+...+|+|-.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 999998875432 357889999888766655556667889999865
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=9.8e-12 Score=112.09 Aligned_cols=238 Identities=17% Similarity=0.271 Sum_probs=165.7
Q ss_pred CCEEEEEecCCC--CEEEEEeCCCeEEEEEccCcceeEee------eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC
Q 011224 243 GPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQF------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 314 (490)
Q Consensus 243 ~~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 314 (490)
..|.+++|..++ ..|+.++.|..+..+.+....+.... .....++..+.. .+..+++|-.+|.+.+|....
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~ 134 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKS 134 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccC
Confidence 455666665444 34555556767776666555444332 111222322222 345677888899999998763
Q ss_pred C----cceeEecCCCCCeeEEEEcCCCC-EEEEEeCC--CeEEEEecCCCceeeeecccc---------ccEEEEEEcCC
Q 011224 315 N----RPIKTFAGHQGEVNCVKWDPTGS-LLASCSDD--VTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPT 378 (490)
Q Consensus 315 ~----~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~p~ 378 (490)
+ .+...+..+ ..+..+.-++..+ ++|+|+.. ..+.|||+.+.+.+.+-+.-. -.++.+.|-+.
T Consensus 135 ~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g 213 (412)
T KOG3881|consen 135 GDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEG 213 (412)
T ss_pred CccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCC
Confidence 2 222233323 3344555555544 46679988 889999998876554322211 23456666654
Q ss_pred CCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEE-E
Q 011224 379 GSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT-Y 456 (490)
Q Consensus 379 g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~-~ 456 (490)
.. ...||++..-+.+|+||.+.+ +++.++.--..+|+++...|+|++|++|..-|.+..||++.++++.. +
T Consensus 214 ~~-------~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~ 286 (412)
T KOG3881|consen 214 SP-------NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL 286 (412)
T ss_pred CC-------CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc
Confidence 21 246899999999999999866 46777777778999999999999999999999999999999998766 5
Q ss_pred ec-CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 457 TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 457 ~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+ .+.|.++--+|.+.+||+|+.|+.|+|+|++
T Consensus 287 kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred CCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 55 4568999999999999999999999999985
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.7e-11 Score=115.50 Aligned_cols=293 Identities=17% Similarity=0.331 Sum_probs=183.2
Q ss_pred ceeEEEECCCCCEEEEE-----ECCC-----cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 144 EVCACAWSPAGSLLASG-----SGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sg-----s~D~-----~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
.++++-|||-|.+|.|= ..++ .+++|++.++.... .+......-++..|+.|.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s-----------------~~q~k~Q~~W~~qfs~dE 137 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRS-----------------QIQKKMQNGWVPQFSIDE 137 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehh-----------------heehhhhcCcccccccch
Confidence 67899999999998762 1232 35688877632111 000111122577888886
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCC-C-EEE-----EEeCCCeEEEEEccCcceeEee---eee
Q 011224 214 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-D-YLL-----TGSCDKTAIVWDVKTEEWKQQF---EFH 283 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~-~-~l~-----s~s~D~~v~iwd~~~~~~~~~~---~~~ 283 (490)
.+.+ --..+.+.+|+........-.-|...|..+.++|.+ . .++ +.+.-..|+||-.......+.. .+-
T Consensus 138 sl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 138 SLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 5432 234578999998764444444567788899999873 2 333 2466678999976522211111 011
Q ss_pred ccCeEEEEccC--CceEE--EEcC---------CCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEE--EeCCCe
Q 011224 284 SGPTLDVDWRN--NVSFA--TSST---------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS--CSDDVT 348 (490)
Q Consensus 284 ~~~~~~~~~~~--~~~~~--~~~~---------d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s--~~~dg~ 348 (490)
...-..+.|.. ...++ ++.- ..++++..+........+ ...++|.++.|+|+++-|+. |-+-.+
T Consensus 217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAk 295 (566)
T KOG2315|consen 217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAK 295 (566)
T ss_pred ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccce
Confidence 11122334432 22222 2222 235666666633333222 24789999999999987654 445678
Q ss_pred EEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC---CCcEEEEeCCCCeEEEEeeCCCCCEEEEE
Q 011224 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSLNGHREPVYSLA 425 (490)
Q Consensus 349 i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 425 (490)
+.|||++ +.++..+ ..++-.++-|+|.|. +|+.++. -|.|-|||+.+.+++..+..-. -+-..
T Consensus 296 vtifnlr-~~~v~df--~egpRN~~~fnp~g~---------ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e 361 (566)
T KOG2315|consen 296 VTIFNLR-GKPVFDF--PEGPRNTAFFNPHGN---------IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE 361 (566)
T ss_pred EEEEcCC-CCEeEeC--CCCCccceEECCCCC---------EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence 9999986 4555544 346667889999986 4555544 4889999999988888776543 35679
Q ss_pred ECCCCCEEEEEeC------CCcEEEEEcCCCeEEEEEecCCCEEEEEECCC
Q 011224 426 FSPTGEYLASGSL------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 470 (490)
Q Consensus 426 ~spdg~~l~s~s~------dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~ 470 (490)
|+|||.+++|++. |+.++||+.. |.++....-....+.++|.|-
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhHhHhheeeeec
Confidence 9999999998864 6889999974 666554433335778888874
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.5e-11 Score=118.23 Aligned_cols=216 Identities=16% Similarity=0.199 Sum_probs=131.1
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEE---EEEeCCCe--EEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL---LTGSCDKT--AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l---~s~s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
..|.+.|..+.....+......+.+-+|+|+|+.+ ++...++. |.+.++.+++..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------------------- 224 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------------------- 224 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce--------------------
Confidence 35667777776555566666677788999999752 24444433 444455443211
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-----CCeEEEEecCCC---ceeeeecccccc
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQD---KYVHDLREHSKE 369 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----dg~i~iwd~~~~---~~~~~~~~~~~~ 369 (490)
.+..+ .+.....+|+|||+.|+..+. +..+.+|++..+ ............
T Consensus 225 -------------------~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~ 282 (428)
T PRK01029 225 -------------------KILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT 282 (428)
T ss_pred -------------------EeecC---CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC
Confidence 11112 223345799999988876553 223445776542 222222222233
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEe--CCC-CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC---CcEE
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD--VEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMH 443 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd--~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---g~i~ 443 (490)
.....|+|+|. .++.+...+|...||. +.. +.....+..+...+...+|||||++|+..+.+ ..|.
T Consensus 283 ~~~p~wSPDG~--------~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~ 354 (428)
T PRK01029 283 QGNPSFSPDGT--------RLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQIC 354 (428)
T ss_pred cCCeEECCCCC--------EEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEE
Confidence 45679999986 2344444567655654 432 23344455555567889999999999876543 4699
Q ss_pred EEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEEC---CCcEEEEEe
Q 011224 444 IWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA---NHTVCVLDF 488 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~---d~~v~v~~~ 488 (490)
+||+.+++..........+..+.|+|||+.|+.... ...|.++|+
T Consensus 355 v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 355 VYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 999998876544434345678999999998876533 235667665
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.4e-11 Score=118.14 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=135.4
Q ss_pred eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC---CeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEE
Q 011224 224 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 300 (490)
Q Consensus 224 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
.|.++|.++.....+..+...+....|+|+|++|+..+.+ ..|.+||+.+++...
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~---------------------- 237 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ---------------------- 237 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----------------------
Confidence 4777787776556666778889999999999998766543 357777776654211
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCC--eEEEEecCCCceeeeeccccccEEEEEEcC
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSP 377 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p 377 (490)
+....+.+....|+|||+.|+ +.+.+| .|.+||+.++... .+..+........|+|
T Consensus 238 --------------------l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 238 --------------------ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK 296 (430)
T ss_pred --------------------ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence 111122344688999999876 455555 5788898877543 3444444556678999
Q ss_pred CCCCCCCCCCcEEEEEEECCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC-C--cEEEEEcCCCeE
Q 011224 378 TGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-K--SMHIWSLKEGKI 452 (490)
Q Consensus 378 ~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-g--~i~iw~~~~~~~ 452 (490)
+|. .++++...+| .|.++++.+++.. .+..........+|+|+|++|+..+.+ + .|.+||+.+++.
T Consensus 297 Dg~--------~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 297 DGR--------TLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 886 2444444444 5777788776643 222112233457899999999876643 3 588899988765
Q ss_pred EEEEecCCCEEEEEECCCCCEEEEEECC-C--cEEEEEe
Q 011224 453 VKTYTGNGGIFEVCWNKEGDKIAACFAN-H--TVCVLDF 488 (490)
Q Consensus 453 ~~~~~~~~~v~~~~~~~~g~~la~~~~d-~--~v~v~~~ 488 (490)
.. +.........+|+|+|+.|+..+.+ + .|.++++
T Consensus 368 ~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 368 RI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 33 3222223356899999988876543 3 3444443
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.4e-11 Score=115.33 Aligned_cols=187 Identities=20% Similarity=0.385 Sum_probs=152.0
Q ss_pred CCCCEEEEEeCCCeEEEEEccCcceeEeeeeec---cCeEEEEcc---------------------CCceEEEEcCCCeE
Q 011224 252 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWR---------------------NNVSFATSSTDNMI 307 (490)
Q Consensus 252 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~---------------------~~~~~~~~~~d~~i 307 (490)
|...||+....||.+++||...++..+.|.... +...+..|. +...++.+...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 455789999999999999999888777664321 112222221 22357788889999
Q ss_pred EEEEcCCCcceeEec--CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCC
Q 011224 308 YVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 385 (490)
Q Consensus 308 ~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~ 385 (490)
.+++...+.....+. .|.+.|+++.++.+-..|.|++.|+.+..|+....+.++.+......+.+++.+|++.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~----- 157 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK----- 157 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC-----
Confidence 999998887666665 6889999999999999999999999999999999999998888888999999999986
Q ss_pred CCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCC-----CCEE-EEEeCCCcEEEEEcCC
Q 011224 386 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT-----GEYL-ASGSLDKSMHIWSLKE 449 (490)
Q Consensus 386 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd-----g~~l-~s~s~dg~i~iw~~~~ 449 (490)
+|++++ +.|++||+.+++.+..+.||.++|.+++|--+ |.++ .++..+..|.+|-+..
T Consensus 158 ----~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ----ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ----EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 677776 68999999999999999999999999999876 5554 4566677788887754
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6.6e-11 Score=117.50 Aligned_cols=216 Identities=17% Similarity=0.203 Sum_probs=133.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC---CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCC--eEEEEEccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~--~v~iwd~~~~ 274 (490)
...+....|+|||+.|+..+.+ ..|.+|++.+.....+....+.+....|+|+|+.|+ +.+.++ .|.+||+.++
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3568889999999998876654 368888987655545544455566789999999876 444444 4666666554
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CC--eEEE
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 351 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg--~i~i 351 (490)
... .+..+........|+|||+.|+..+. +| .|.+
T Consensus 278 ~~~------------------------------------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 278 QLS------------------------------------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYK 315 (430)
T ss_pred CeE------------------------------------------EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 321 12223333456789999998766654 33 5667
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECCC
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 429 (490)
+++.+++... +...........|+|+|. .++++...++ .|.+||+.+++.. .+.. ........|+||
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~Spdg~--------~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spd 384 (430)
T PRK00178 316 VNVNGGRAER-VTFVGNYNARPRLSADGK--------TLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPN 384 (430)
T ss_pred EECCCCCEEE-eecCCCCccceEECCCCC--------EEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCC
Confidence 7777665422 222222334568899886 2333333333 5888898877643 2321 222235689999
Q ss_pred CCEEEEEeCC---CcEEEEEcCCCeEEEEEec-CCCEEEEEECCC
Q 011224 430 GEYLASGSLD---KSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 470 (490)
Q Consensus 430 g~~l~s~s~d---g~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~ 470 (490)
|++|+..+.+ ..|.++++. |.....+.. .+.+...+|+|-
T Consensus 385 g~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 385 GTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 9998866543 346677764 443333433 345778889874
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=6.6e-09 Score=99.66 Aligned_cols=266 Identities=14% Similarity=0.229 Sum_probs=166.1
Q ss_pred EEEEeCC----CeEEEEEC--CCceeEEe--cCCCCCEEEEEecCCCCEEEEEeC----CCeEEEEEccCc--cee--Ee
Q 011224 216 LATGSYD----GQARIWST--NGDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTE--EWK--QQ 279 (490)
Q Consensus 216 l~sg~~d----g~i~iw~~--~~~~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd~~~~--~~~--~~ 279 (490)
++.|++. +.|.+|.. ........ ..-......|+++|++++|++... .+.|..|.+... .+. ..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556665 68888876 22222211 112334467889999999998876 578999987653 332 22
Q ss_pred eeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeE----ec----------CCCCCeeEEEEcCCCCEEEEE
Q 011224 280 FEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKT----FA----------GHQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~----~~----------~h~~~v~~v~~~~~~~~l~s~ 343 (490)
..........+... ....+++...++.+.++++.....+.. +. .-.....++.++|+|+++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 32223333445543 334455666899999999987432211 11 112346789999999988766
Q ss_pred eC-CCeEEEEecCCCc--ee--eeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC--CCeE--EEE
Q 011224 344 SD-DVTAKIWNMKQDK--YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKL--LYS 413 (490)
Q Consensus 344 ~~-dg~i~iwd~~~~~--~~--~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~--~~~~--~~~ 413 (490)
.. ...|.+|++.... +. ..+. .....-..+.|+|++. .+.++.-.++.|.++++. .+.. +..
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~--------~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGK--------YAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcC--------EEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 43 4579999987654 31 1222 2334567889999875 355666778899999987 4432 222
Q ss_pred eeCC------CCCEEEEEECCCCCEEEEEe-CCCcEEEEEcC--CCeE--EEEEecCC-CEEEEEECCCCCEEEEEE-CC
Q 011224 414 LNGH------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLK--EGKI--VKTYTGNG-GIFEVCWNKEGDKIAACF-AN 480 (490)
Q Consensus 414 ~~~h------~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~--~~~~--~~~~~~~~-~v~~~~~~~~g~~la~~~-~d 480 (490)
+... ......|+++|||++|.++. ..++|.+|++. +|++ +..+...+ ....++++|+|++|+++. .+
T Consensus 234 ~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred eeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 2211 12578899999999987655 56789999993 3544 44444433 489999999999888765 57
Q ss_pred CcEEEEEee
Q 011224 481 HTVCVLDFR 489 (490)
Q Consensus 481 ~~v~v~~~~ 489 (490)
+.|.+|++.
T Consensus 314 ~~v~vf~~d 322 (345)
T PF10282_consen 314 NTVSVFDID 322 (345)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 789999764
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.1e-10 Score=115.73 Aligned_cols=212 Identities=17% Similarity=0.211 Sum_probs=131.3
Q ss_pred eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeC-CC--eEEEEEccCcceeEeeeeeccCeEEEEccCCceEEE
Q 011224 224 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 300 (490)
Q Consensus 224 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
.+.++|..+.....+..+...+....|+|+|+.|+..+. ++ .|.+||+.+++...
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~---------------------- 256 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK---------------------- 256 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----------------------
Confidence 667778777655566677788999999999998876543 22 46677766543211
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEE-EeCCCe--EEEEecCCCceeeeeccccccEEEEEEcC
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS-CSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSP 377 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~p 377 (490)
+..+ .+.....+|+|||+.|+. .+.+|. |.+||+.++.. ..+..+........|+|
T Consensus 257 -----------------lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp 315 (448)
T PRK04792 257 -----------------VTSF---PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP 315 (448)
T ss_pred -----------------ecCC---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC
Confidence 0111 112335789999997764 566665 77778877654 33444444566788999
Q ss_pred CCCCCCCCCCcEEEEEEECCCc--EEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCeE
Q 011224 378 TGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKI 452 (490)
Q Consensus 378 ~g~~~~~~~~~~~l~sgs~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~-dg--~i~iw~~~~~~~ 452 (490)
+|. .++++...++. |.++|+.+++... +..........+|+|||++|+..+. ++ .|.++++.+++.
T Consensus 316 DG~--------~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 316 DGK--------SLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM 386 (448)
T ss_pred CCC--------EEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence 986 24444444444 6666777665432 2212222345799999999877654 34 456678777765
Q ss_pred EEEEecCCCEEEEEECCCCCEEEEEECCC-c--EEEEEe
Q 011224 453 VKTYTGNGGIFEVCWNKEGDKIAACFANH-T--VCVLDF 488 (490)
Q Consensus 453 ~~~~~~~~~v~~~~~~~~g~~la~~~~d~-~--v~v~~~ 488 (490)
.. +.........+|+|+|+.|+....++ . +.++++
T Consensus 387 ~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 387 QV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 33 22222233568999999888765433 2 555543
No 255
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.4e-10 Score=107.67 Aligned_cols=314 Identities=16% Similarity=0.300 Sum_probs=184.5
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC---
Q 011224 146 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--- 222 (490)
Q Consensus 146 ~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d--- 222 (490)
+-+.|||-|+||+|--.-| |.+|-=.+-. .+.. -....|..+.|||..+||+|-+..
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~----------------r~~R---F~Hp~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD----------------RIQR---FYHPGVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHH----------------HHHh---ccCCCceeeecCCccceEEEecCCccc
Confidence 5689999999999987766 7789522110 0000 113458999999999999987652
Q ss_pred --------CeEEEEECCCc-eeEEecC--CCCCEEE-EEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 223 --------GQARIWSTNGD-LKCTLSK--HKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 223 --------g~i~iw~~~~~-~~~~~~~--h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
..++|||+..+ ....|.. ....++- ..||.+++|++.-.. .+|.||+.....+...-...-..+...
T Consensus 274 ~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~F 352 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDF 352 (698)
T ss_pred cCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCc
Confidence 57899997643 4444443 3333443 589999999887665 578888765533322111112223344
Q ss_pred EccCCceEEE---EcCC---CeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEE----------eCCCeEEEEec
Q 011224 291 DWRNNVSFAT---SSTD---NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC----------SDDVTAKIWNM 354 (490)
Q Consensus 291 ~~~~~~~~~~---~~~d---~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~----------~~dg~i~iwd~ 354 (490)
.|.+...+++ -..+ ..+.+..+...+.+++-.-|.-.=..+-|-.+|.+|+.- +.-..+.|+.+
T Consensus 353 swsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 353 SWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred ccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 4443322111 1111 123334444444443333232222345555566665422 22224566666
Q ss_pred CCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCCC-C---eEEEEeeCCCCCEEEEEECCC
Q 011224 355 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-G---KLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~-~---~~~~~~~~h~~~v~~l~~spd 429 (490)
+..............|...+|-|.|. +..+++|- .-.++.+|.+.+ . +++..+. ....+.|.|+|.
T Consensus 433 reKdIpve~velke~vi~FaWEP~gd-------kF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPk 503 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGD-------KFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPK 503 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCC-------eEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCC
Confidence 65544333334456788999999986 23344443 245788887763 1 2233333 245788999999
Q ss_pred CCEEEEE---eCCCcEEEEEcCCCeEEEEE-ecCCCEEEEEECCCCCEEEEEECC------CcEEEEEee
Q 011224 430 GEYLASG---SLDKSMHIWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFAN------HTVCVLDFR 489 (490)
Q Consensus 430 g~~l~s~---s~dg~i~iw~~~~~~~~~~~-~~~~~v~~~~~~~~g~~la~~~~d------~~v~v~~~~ 489 (490)
|++++.+ |..|.+.++|..-..+..+- ..+...+.+.|.|.|+++++++.. ..-++|+|+
T Consensus 504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred CcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9999875 45788999998743332222 234557889999999999998654 345566654
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.8e-10 Score=114.21 Aligned_cols=216 Identities=16% Similarity=0.222 Sum_probs=130.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC-C--eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEE-EeCCCe--EEEEEccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYD-G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKT--AIVWDVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~d-g--~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~--v~iwd~~~~ 274 (490)
...+.+..|||||+.|+..+.+ + .|++|+..+.....+....+.....+|+|+|+.|+. .+.++. |.+||+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 3467889999999998876543 2 578888765544334333344457899999998764 455554 555555444
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CC--eEEE
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKI 351 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg--~i~i 351 (490)
+. ..+..+.......+|+|||+.|+..+. ++ .|.+
T Consensus 297 ~~------------------------------------------~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~ 334 (448)
T PRK04792 297 AL------------------------------------------TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYR 334 (448)
T ss_pred Ce------------------------------------------EECccCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence 32 112223334566889999998766554 44 4566
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc--EEEEeCCCCeEEEEeeCCCCCEEEEEECCC
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~spd 429 (490)
+|+.+++... +...........|+|+|. .++++...++. |.++|+.++... .+... .......|+||
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~--------~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spd 403 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLGGSITPDGR--------SMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPN 403 (448)
T ss_pred EECCCCCEEE-EecCCCCCcCeeECCCCC--------EEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCC
Confidence 6776665432 222222234568899886 34444444554 555677776543 23322 12234589999
Q ss_pred CCEEEEEeC-CC--cEEEEEcCCCeEEEEEec-CCCEEEEEECCC
Q 011224 430 GEYLASGSL-DK--SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKE 470 (490)
Q Consensus 430 g~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~ 470 (490)
|++|+..+. ++ .+.++++ +|+....+.. .+.+...+|+|-
T Consensus 404 G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 404 GTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCCC
Confidence 998876554 33 3677776 5655555543 345778899883
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.40 E-value=1.8e-12 Score=136.26 Aligned_cols=201 Identities=17% Similarity=0.331 Sum_probs=154.2
Q ss_pred ccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 138 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
++.|-..|.++.=||...+.+||+.||.|++|.+..+. ++.+.+. .+ ...|+.+.|+.+|+.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~----------~v~~~rt-----~g-~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ----------QVVCFRT-----AG-NSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCC----------eEEEeec-----cC-cchhhhhhhcccCCcee
Confidence 34455678888889999999999999999999987654 2233222 12 25689999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEe---CCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 218 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 218 sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
.+..||.+.+|..........+.|......++|-. ..+++++ .++.+.+||..-..
T Consensus 2268 i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~------------------- 2326 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP------------------- 2326 (2439)
T ss_pred eeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc-------------------
Confidence 99999999999999777777888988888888765 4455554 35678888742110
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 374 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 374 (490)
....+ -..|.+.++++++-|..++|++||.+|.|++||++..+.++.++.
T Consensus 2327 -------------------~~s~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------- 2376 (2439)
T KOG1064|consen 2327 -------------------MNSLV--HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------- 2376 (2439)
T ss_pred -------------------cccee--eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------
Confidence 00111 156889999999999999999999999999999999888877654
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee
Q 011224 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 415 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 415 (490)
+. . +.++++|+..|+|+||++.....+.++.
T Consensus 2377 ~~--~--------~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2377 LD--T--------REYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hh--h--------hheeeccCcccceEEEEccccchhhcCc
Confidence 11 1 1278999999999999998777666654
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.39 E-value=4.9e-08 Score=93.69 Aligned_cols=258 Identities=13% Similarity=0.232 Sum_probs=160.9
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCeEEEEECCCc---e--eEEecCCCCCEEEEEecCCCCEEEEEe-CCCeEEEEEc
Q 011224 202 KDVTTLDWNGEGTLLATGSY----DGQARIWSTNGD---L--KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDV 271 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~----dg~i~iw~~~~~---~--~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~ 271 (490)
.....++++|++++|++... ++.|..|..... + .............++++|++.+|+++. .+|+|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34667889999999999877 468888876542 2 222222334456789999999988776 5899999999
Q ss_pred cC-cceeEee--eee-----------ccCeEEEEccCC--ceEEEEcCCCeEEEEEcCCCcc-e---eEec-CCCCCeeE
Q 011224 272 KT-EEWKQQF--EFH-----------SGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRP-I---KTFA-GHQGEVNC 330 (490)
Q Consensus 272 ~~-~~~~~~~--~~~-----------~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~-~---~~~~-~h~~~v~~ 330 (490)
.. +.+.... ..+ ......+.+.++ ..+++.-....|+++++..... + ..+. .....-..
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 4333221 111 122455666544 3344455566888888876541 2 1222 22345678
Q ss_pred EEEcCCCCEEEE-EeCCCeEEEEecC--CCce--eeeeccc------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc
Q 011224 331 VKWDPTGSLLAS-CSDDVTAKIWNMK--QDKY--VHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDST 399 (490)
Q Consensus 331 v~~~~~~~~l~s-~~~dg~i~iwd~~--~~~~--~~~~~~~------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~ 399 (490)
++|+|+++++.. +-.+++|.++++. .+.. +..+... ......|+++|+|. .+.++.-..+.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~--------~lyvsnr~~~s 268 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR--------FLYVSNRGSNS 268 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS--------EEEEEECTTTE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC--------EEEEEeccCCE
Confidence 999999998754 4567889999987 3322 2222111 12567889999986 45566667889
Q ss_pred EEEEeCC--CCe--EEEEeeCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEc--CCCeEEEEE--ecCCCEEEEEE
Q 011224 400 VKLWDVE--LGK--LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEGKIVKTY--TGNGGIFEVCW 467 (490)
Q Consensus 400 i~iwd~~--~~~--~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~--~~~~~~~~~--~~~~~v~~~~~ 467 (490)
|.+|++. +++ .+..+......-..++++|+|++|+++. .++.|.+|++ .+|.+...- ..-....++.|
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999983 333 3334443334478999999999998776 5678999976 577765443 22344666665
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.5e-10 Score=107.47 Aligned_cols=274 Identities=17% Similarity=0.285 Sum_probs=171.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC-----------CeEEEEEcc
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----------KTAIVWDVK 272 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----------~~v~iwd~~ 272 (490)
-+-+.|||.|.||+|--.- -|.+|--..-..+.-..|.+ |.-+.|||..+||+|-|.- ..++|||+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4678999999999987664 47788644322222224654 6788999999999997642 579999999
Q ss_pred CcceeEeeeeeccC--e-EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC---
Q 011224 273 TEEWKQQFEFHSGP--T-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD--- 346 (490)
Q Consensus 273 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--- 346 (490)
+|.....|....++ + .-+.|+.+..+++.-..+.|.++....-.++..-.-.-..|....|+|.+++||-=+..
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 99998888763332 2 23467666666666555778888765422211100112457778899999888743321
Q ss_pred --CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEE----------EECCCcEEEEeCCCCeEEEEe
Q 011224 347 --VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS----------ASFDSTVKLWDVELGKLLYSL 414 (490)
Q Consensus 347 --g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~s----------gs~dg~i~iwd~~~~~~~~~~ 414 (490)
..+.|-.+.+++.+++-..+.-.-..+.|...|. +|+. .+.-.++-|+.++........
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd---------yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD---------YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred CcceEEEEecCccceeeeccceeeeccEEEeccCCc---------EEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 2455666666665555444333334456665554 3322 111223555555433322222
Q ss_pred eCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEcCC-C---eEEEEEecCCCEEEEEECCCCCEEEEE---ECCCcEE
Q 011224 415 NGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKE-G---KIVKTYTGNGGIFEVCWNKEGDKIAAC---FANHTVC 484 (490)
Q Consensus 415 ~~h~~~v~~l~~spdg~~l~s~s~---dg~i~iw~~~~-~---~~~~~~~~~~~v~~~~~~~~g~~la~~---~~d~~v~ 484 (490)
-.....|...+|-|.|..+++-+. -.++.+|.+++ . +++..+.. ...+.+.|+|.|..++++ +..|.+.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceE
Confidence 224567889999999987765443 25789998873 2 34555543 346899999999988765 5578888
Q ss_pred EEEee
Q 011224 485 VLDFR 489 (490)
Q Consensus 485 v~~~~ 489 (490)
++|..
T Consensus 521 F~D~~ 525 (698)
T KOG2314|consen 521 FYDTD 525 (698)
T ss_pred EEecc
Confidence 88753
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=2.9e-08 Score=93.10 Aligned_cols=239 Identities=13% Similarity=0.129 Sum_probs=145.1
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEECCCc-eeEEecCC-------CCCEEEEEecCCCCEEEEEe-C-CCeEEE
Q 011224 209 WNGEGTLLATGSY----------DGQARIWSTNGD-LKCTLSKH-------KGPIFSLKWNKKGDYLLTGS-C-DKTAIV 268 (490)
Q Consensus 209 ~s~~~~~l~sg~~----------dg~i~iw~~~~~-~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s-~-D~~v~i 268 (490)
+||||+.|+.+.. +..|.+||.... ....+.-- ......++++|+|++|+... . +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998888766 789999998653 33333311 12234788999999998766 3 789999
Q ss_pred EEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC-Ccc----eeEecCCCCCe-eEEEEcC-CCCEEE
Q 011224 269 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRP----IKTFAGHQGEV-NCVKWDP-TGSLLA 341 (490)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~----~~~~~~h~~~v-~~v~~~~-~~~~l~ 341 (490)
.|+.+++.+..+.... +...+...+.. +..-+.|+......+.. ++. ...|.+-..++ ..-.|.+ +|+++.
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCc-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999999888776422 11111111222 22223333333322221 110 01111100000 0013455 788776
Q ss_pred EEeCCCeEEEEecCCCc-----eeeeecc-------ccccEEEEEEcCCCCCCCCCCCcEEEEEEEC--------CCcEE
Q 011224 342 SCSDDVTAKIWNMKQDK-----YVHDLRE-------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVK 401 (490)
Q Consensus 342 s~~~dg~i~iwd~~~~~-----~~~~~~~-------~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~--------dg~i~ 401 (490)
.... |+|.+.|+.... ....+.. ......-++++|++. .+|++.-.. .+.|.
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~-------~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD-------RIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC-------EEEEEecCCccccccCCCCEEE
Confidence 6666 999999964432 2222111 112223367777764 233322111 25799
Q ss_pred EEeCCCCeEEEEeeCCCCCEEEEEECCCCC-EEEEEe-CCCcEEEEEcCCCeEEEEEec
Q 011224 402 LWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTG 458 (490)
Q Consensus 402 iwd~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s-~dg~i~iw~~~~~~~~~~~~~ 458 (490)
++|..+++.+..+.- ...+..|+|+||++ +|++.. .++.|.++|+.+++.++++..
T Consensus 283 ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 283 VVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred EEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 999999999988763 35789999999999 777665 678899999999999998844
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.35 E-value=2.5e-10 Score=99.49 Aligned_cols=234 Identities=18% Similarity=0.292 Sum_probs=150.8
Q ss_pred CCEEEEEecC---CCC-EEEEEeCCCeEEEEEccCcceeEeeeeec------cCeEEEEccC-CceEEEEcCCCeEEEEE
Q 011224 243 GPIFSLKWNK---KGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS------GPTLDVDWRN-NVSFATSSTDNMIYVCK 311 (490)
Q Consensus 243 ~~V~~l~~~~---~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~d~~i~~~~ 311 (490)
..+..+.|.. ++. .++-+..+|.|.++-.....-...+..-. ....+++|.. ...++++-.+|.+.+.+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3445555542 233 45566677888888544322222222111 1234556643 34566677777777554
Q ss_pred cCCCc--ceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecC-CCceeee-eccccccEEEEEEcCCCCCCCCCC
Q 011224 312 IGENR--PIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK-QDKYVHD-LREHSKEIYTIRWSPTGSGTNNPN 386 (490)
Q Consensus 312 ~~~~~--~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~-~~~~~~~-~~~~~~~i~~v~~~p~g~~~~~~~ 386 (490)
..... .++.+++|.-+++.+.|+... +++.+|++|+.+..||++ .+.++.. .+.|...|.+|.-+|.-.
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~------ 223 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKP------ 223 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCC------
Confidence 44333 234778999999999997644 588999999999999998 4444433 556778888888776532
Q ss_pred CcEEEEEEECCCcEEEEeCC-CCeEEEEeeCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEEcCCCeE-----EEEEec
Q 011224 387 QQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTG--EYLASGSLDKSMHIWSLKEGKI-----VKTYTG 458 (490)
Q Consensus 387 ~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spdg--~~l~s~s~dg~i~iw~~~~~~~-----~~~~~~ 458 (490)
.++++|+.|-+|++||.+ .+++++.-. -.+.|+.+.++|.- ..|+++-..| .+|-+..++.. ......
T Consensus 224 --~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~ 299 (339)
T KOG0280|consen 224 --TYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKI 299 (339)
T ss_pred --ceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeecccc
Confidence 489999999999999999 566666544 34789999999963 4566665555 66666655432 222222
Q ss_pred CC-CEEEEEECCCCCEEEEE-ECCCcEE-EE
Q 011224 459 NG-GIFEVCWNKEGDKIAAC-FANHTVC-VL 486 (490)
Q Consensus 459 ~~-~v~~~~~~~~g~~la~~-~~d~~v~-v~ 486 (490)
+. -++.-.|+.....||+| +.|+.+. +|
T Consensus 300 hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 300 HDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred ccceeeccccccccceeeeeeccccceeeee
Confidence 32 36777786666789987 5576643 66
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=4.5e-10 Score=106.91 Aligned_cols=197 Identities=20% Similarity=0.302 Sum_probs=143.0
Q ss_pred CCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE--------------------c
Q 011224 151 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW--------------------N 210 (490)
Q Consensus 151 sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--------------------s 210 (490)
.|-..++|....||.+|+|+...++.....+.. . .-++.-++..| +
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~-----------~---~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPI-----------A---SLSGTCTYTKWGLSADYSPMKWLSLEKAKKAS 67 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccc-----------h---hccCcceeEEEEEEeccchHHHHhHHHHhhcc
Confidence 345678999999999999998765432111100 0 00111222222 3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-eeEEe--cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 211 GEGTLLATGSYDGQARIWSTNGD-LKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~~-~~~~~--~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
.+-.+++-|...|.|.+|++.+. ....+ .+|-+.|.++.++.+-..|.|++.|+.+..|+.......+
T Consensus 68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~--------- 138 (541)
T KOG4547|consen 68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR--------- 138 (541)
T ss_pred CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---------
Confidence 45567888999999999997654 44444 4799999999999999999999999999999987654322
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
+|. +....+.+++++|||+.+++++ +.|++||+.+++.+..|.+|.
T Consensus 139 ---------------------~~~-----------~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~ 184 (541)
T KOG4547|consen 139 ---------------------IWK-----------EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHG 184 (541)
T ss_pred ---------------------eec-----------cCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCC
Confidence 222 2334467899999999999886 589999999999999999999
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
++|.++.|...-. .....++|.+...+..|.+|-++.
T Consensus 185 s~v~t~~f~~~~~---g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 185 SPVRTLSFTTLID---GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceEEEEEEEecc---ccccceeeeccccccceeEEEEEc
Confidence 9999999976611 112345777778888888997653
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.34 E-value=1.3e-08 Score=99.46 Aligned_cols=293 Identities=14% Similarity=0.129 Sum_probs=177.0
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 011224 153 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN- 231 (490)
Q Consensus 153 ~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~- 231 (490)
.+..++.++.++.|..+|..+|+....... ... .... .. .++..++.++.++.+..+|..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-----------~~~---~~~~---p~--v~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDL-----------DER---LSGG---VG--ADGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecC-----------CCC---cccc---eE--EcCCEEEEEcCCCEEEEEECCC
Confidence 366888888999999999888764321111 000 0011 11 246778888899999999974
Q ss_pred CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE-----EEEccCCceEEEEcCCCe
Q 011224 232 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-----DVDWRNNVSFATSSTDNM 306 (490)
Q Consensus 232 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~ 306 (490)
++....... .+.+.+.-.. .+..++.++.++.+..||+++++.+-.+........ .....+ ..++.+..++.
T Consensus 125 G~~~W~~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~-~~v~~~~~~g~ 201 (377)
T TIGR03300 125 GKELWRAKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIAD-GGVLVGFAGGK 201 (377)
T ss_pred CcEeeeecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEEC-CEEEEECCCCE
Confidence 555443322 1222211111 245778888899999999999887655443221110 001112 34566677888
Q ss_pred EEEEEcCCCcceeEecCCC--C-----C---e-eEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEE
Q 011224 307 IYVCKIGENRPIKTFAGHQ--G-----E---V-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 307 i~~~~~~~~~~~~~~~~h~--~-----~---v-~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
++.++..+++.+....... + . + .+..+ .+..++.++.+|.+..||..+++.+...... .......
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~ 277 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV 277 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE
Confidence 8888887776543322100 0 0 0 11112 2457778888999999999988766543311 0111111
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
.+ ..++.++.+|.|..+|..+++.++....... ...+... .+..|++++.+|.|.+++..+|+++.
T Consensus 278 --~~---------~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 278 --DD---------NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred --eC---------CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 11 1456677899999999999998877632221 1222222 36688999999999999999999998
Q ss_pred EEecCC-CE-EEEEECCCCCEEEEEECCCcEEEE
Q 011224 455 TYTGNG-GI-FEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 455 ~~~~~~-~v-~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
.+.... .+ .+.++ .++.|..++.||.|..+
T Consensus 345 ~~~~~~~~~~~sp~~--~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 345 RLKTDGSGIASPPVV--VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEcCCCccccCCEE--ECCEEEEEeCCceEEEe
Confidence 886544 22 22222 23468888889988654
No 264
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.33 E-value=2.3e-09 Score=115.94 Aligned_cols=249 Identities=12% Similarity=0.115 Sum_probs=159.8
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCceeEEecC--C------------CCCEEEEEecCCCCEEEEEe-CCCeEEE
Q 011224 205 TTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSK--H------------KGPIFSLKWNKKGDYLLTGS-CDKTAIV 268 (490)
Q Consensus 205 ~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~--h------------~~~V~~l~~~~~~~~l~s~s-~D~~v~i 268 (490)
..+++++ ++.++++-..++.|++|+..+.....+.+ . -....+|++.++++.|+.+. ..+.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 4577876 46677777888999999988765544332 1 11247889998888666554 4567888
Q ss_pred EEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCc--ceeEecCCCCCeeEEEEcC-CCCEEEEEeC
Q 011224 269 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSD 345 (490)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~ 345 (490)
+|+.++. +.++... +..+. +...+. .... -..-..++++| ++.++++.+.
T Consensus 651 id~~~~~-V~tlag~------------------G~~g~----~~~gg~~~~~~~----ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 651 IDFVNET-VRTLAGN------------------GTKGS----DYQGGKKGTSQV----LNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred EecCCCE-EEEEecc------------------CcccC----CCCCChhhhHhh----cCCCeEEEEecCCCeEEEEECC
Confidence 8876653 2222110 00000 000000 0000 11234789999 5677788888
Q ss_pred CCeEEEEecCCCceeeeeccc---------------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE
Q 011224 346 DVTAKIWNMKQDKYVHDLREH---------------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 410 (490)
Q Consensus 346 dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 410 (490)
++.|++||..++... .+.+. -.....++++|++. .++++-+.++.|++||+.++..
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--------~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--------ELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCC--------EEEEEECCCCeEEEEECCCCcE
Confidence 999999998766432 11110 11234577777764 3556667789999999987653
Q ss_pred EEEeeC-------------C--------CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC----------
Q 011224 411 LYSLNG-------------H--------REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---------- 459 (490)
Q Consensus 411 ~~~~~~-------------h--------~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~---------- 459 (490)
.....+ + ...-..|+|+++|.++++-+.+++|++||..++.+.......
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 211100 0 012358999999999999999999999999887765432110
Q ss_pred ----CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 460 ----GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 460 ----~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.....++++++|+.+++-+.|++|++||++
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 135789999999999999999999999975
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=1e-10 Score=101.76 Aligned_cols=176 Identities=18% Similarity=0.289 Sum_probs=128.9
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCC------CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeeecccccc
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKE 369 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~ 369 (490)
++.....|.|.++..........+.+-. ....++.|++.+.-++++-.+|.+.+-+...... ++..+.|.-+
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 3444556666666655433333333221 1245789999999999999999998665544433 3477889999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-CCeEEEE-eeCCCCCEEEEEECCC-CCEEEEEeCCCcEEEEE
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS-LNGHREPVYSLAFSPT-GEYLASGSLDKSMHIWS 446 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~-~~~h~~~v~~l~~spd-g~~l~s~s~dg~i~iw~ 446 (490)
++...|+.... .++.+|+.||.+..||++ .++.++. .+-|...|.+|.-||. +.+|+||+.|-.|++||
T Consensus 168 ~Wta~f~~~~p--------nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 168 AWTAKFSDKEP--------NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred eeeeecccCCC--------ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 99998876542 489999999999999999 4455655 5568889999988864 68999999999999999
Q ss_pred cCC-CeEEEEEecCCCEEEEEECCC--CCEEEEEECCC
Q 011224 447 LKE-GKIVKTYTGNGGIFEVCWNKE--GDKIAACFANH 481 (490)
Q Consensus 447 ~~~-~~~~~~~~~~~~v~~~~~~~~--g~~la~~~~d~ 481 (490)
.+. ++.+..-...++|+.+.|+|. +..|++|..+|
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G 277 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG 277 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcC
Confidence 984 555555445578999999996 34677777776
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.32 E-value=1.7e-08 Score=107.37 Aligned_cols=319 Identities=14% Similarity=0.295 Sum_probs=195.6
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEE----ecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIW----TIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~W----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
..+.|-++.|-++...|+.+..+|.|.+. +..+.. ...... -...|.+++||||+..|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-----------~E~VG~-------vd~GI~a~~WSPD~Ell 135 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-----------IEIVGS-------VDSGILAASWSPDEELL 135 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-----------eEEEEE-------EcCcEEEEEECCCcCEE
Confidence 45679999999999888888889999888 332211 111111 14579999999999999
Q ss_pred EEEeCCCeEEEEECCC------------------------ceeEEecC------------------------CCCCEEEE
Q 011224 217 ATGSYDGQARIWSTNG------------------------DLKCTLSK------------------------HKGPIFSL 248 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~------------------------~~~~~~~~------------------------h~~~V~~l 248 (490)
+....++++.+-+.+- +....|.| +...-..+
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I 215 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI 215 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence 9999999888754210 01111111 11133568
Q ss_pred EecCCCCEEEEEeC------CCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcC---C-CeEEEEEcCCCcce
Q 011224 249 KWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST---D-NMIYVCKIGENRPI 318 (490)
Q Consensus 249 ~~~~~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d-~~i~~~~~~~~~~~ 318 (490)
+|..||.+|++.+- -+.+|||+-+ |.+..+-+.-.+--..+.|.+...++++.. + ..|.++.. ++-.-
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrh 293 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRH 293 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEe
Confidence 89999999988764 2679999854 555444443333345678987766655532 2 23333332 22222
Q ss_pred eEec----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee--eeeccc-cccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 319 KTFA----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREH-SKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 319 ~~~~----~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~-~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
..|. .....|..+.|++|+..||..-.|. |.+|-..+.... +++... ...+..+.|+|... +.|
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p--------~~L 364 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP--------LRL 364 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC--------CEE
Confidence 2222 3456789999999999999887665 999987665432 233322 22344588988643 234
Q ss_pred EEEECCCcEEEEeC----CCC--------eEEEEee-----------------------CCCCCEEEEEECCCCCEEEEE
Q 011224 392 ASASFDSTVKLWDV----ELG--------KLLYSLN-----------------------GHREPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 392 ~sgs~dg~i~iwd~----~~~--------~~~~~~~-----------------------~h~~~v~~l~~spdg~~l~s~ 436 (490)
.....+|.+..+++ ..+ ..+..+. ....+|.+++|++++..+|+-
T Consensus 365 ~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl 444 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL 444 (928)
T ss_pred EEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE
Confidence 44444455544432 111 1112111 134679999999999889999
Q ss_pred eCCCcEEEEEcCCCe--------EEEEEe-----------cCCCEEEEEECCCCCEEEEEECC---CcEEEEEe
Q 011224 437 SLDKSMHIWSLKEGK--------IVKTYT-----------GNGGIFEVCWNKEGDKIAACFAN---HTVCVLDF 488 (490)
Q Consensus 437 s~dg~i~iw~~~~~~--------~~~~~~-----------~~~~v~~~~~~~~g~~la~~~~d---~~v~v~~~ 488 (490)
..||.|.+|...... +...+. ....+..++|-.+...++....+ ..+.++++
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 999999999854321 111111 12346788898888766666554 45555554
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=130.34 Aligned_cols=246 Identities=18% Similarity=0.291 Sum_probs=176.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc-CeEEE
Q 011224 212 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDV 290 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~ 290 (490)
.++.+.....+++..-|...+.-. .+..+-..|..+.-||...+.+||+.||.|++|....+..+..++.... .+...
T Consensus 2179 ~s~~~~~~n~~~~~~tq~~~~~~~-~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2179 FSNRFTPSNLPWLGSTQTSRGASV-MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred ccccCCcccCCccccceeccccee-EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 345555556666666666544322 3344556788888899999999999999999998877766655543322 23333
Q ss_pred Ec-cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe---CCCeEEEEecCC--C-ceeeee
Q 011224 291 DW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQ--D-KYVHDL 363 (490)
Q Consensus 291 ~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~dg~i~iwd~~~--~-~~~~~~ 363 (490)
.| .....|..+..||.+.+|... +++......|......+.|-. .++++++ .++.+.+||..- + .+++
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--
Confidence 33 355678888899999999987 677778888888888888764 5667665 467899999642 2 2344
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
..|.+.++++++.|... +|++|+.+|.|++||++..++++.+.. +. ...++++|+..|.|+
T Consensus 2333 ~~H~~gaT~l~~~P~~q---------llisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ik 2393 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQ---------LLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIK 2393 (2439)
T ss_pred eecCCCceEEEEcCcce---------EEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceE
Confidence 67999999999999875 789999999999999998777655543 34 567899999999999
Q ss_pred EEEcCCCeEEEEEecCC---CE---EEEEECC-CCCEEEEEECCCc
Q 011224 444 IWSLKEGKIVKTYTGNG---GI---FEVCWNK-EGDKIAACFANHT 482 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~~---~v---~~~~~~~-~g~~la~~~~d~~ 482 (490)
||++..-.++++++... ++ ......- ..++|.+|+.|++
T Consensus 2394 Iw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2394 IWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred EEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 99999888888776532 21 1122211 2467777877764
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=5.9e-09 Score=110.78 Aligned_cols=272 Identities=14% Similarity=0.256 Sum_probs=171.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEE----ECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcce
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIW----STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw----~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 276 (490)
...|.++.|-++...++.+..+|.|.+. +...........-...|.+++|+||+..|+....++++.+-+ ++.+.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceE
Confidence 4679999999999999999999999999 544444433444567899999999999999999999988874 34444
Q ss_pred eEeeeeec-----cCeEEEEccCC-ceEEEEcCCCeEEEEEcCC-Ccc---eeEecCCCCCeeEEEEcCCCCEEEEEeC-
Q 011224 277 KQQFEFHS-----GPTLDVDWRNN-VSFATSSTDNMIYVCKIGE-NRP---IKTFAGHQGEVNCVKWDPTGSLLASCSD- 345 (490)
Q Consensus 277 ~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~-~~~---~~~~~~h~~~v~~v~~~~~~~~l~s~~~- 345 (490)
+.....+. .....+.|... ..|=.+.....-+ .... ..+ ...+. +...-..++|..||.+||+.+-
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~--~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAAR--QLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhh--hccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 43333221 12233444221 1111000000000 0000 000 01122 3334567999999999998875
Q ss_pred --C---CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC---CCcEEEEeCCCCeEEEEe---
Q 011224 346 --D---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKLLYSL--- 414 (490)
Q Consensus 346 --d---g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~~~~~--- 414 (490)
. ..||||+-. |....+...-.+--.+++|.|.|. ++|+.-. .-.|.+|. ++|-.-..+
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~---------lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~ 299 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGN---------LIASSQRLPDRHDVVFFE-RNGLRHGEFTLR 299 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCC---------EEEEEEEcCCCcEEEEEe-cCCcEeeeEecC
Confidence 3 479999854 554433333334446789999996 6666543 24466665 334333332
Q ss_pred -eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe--EEEEE--ecCCCEEEEEECCCC-CEEEEEECCCcEEEEEe
Q 011224 415 -NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK--IVKTY--TGNGGIFEVCWNKEG-DKIAACFANHTVCVLDF 488 (490)
Q Consensus 415 -~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~--~~~~~--~~~~~v~~~~~~~~g-~~la~~~~d~~v~v~~~ 488 (490)
......|..|.|++|+..||..-.|. |.+|-..+.. +-+.+ .....+..+.|+|.. ..|.....++.+..+++
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 23456799999999999999977665 9999998865 22333 333445569999964 57777777788877765
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=4.2e-08 Score=92.02 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=142.6
Q ss_pred CeEEEEECCCce-eEEecCCCCCEEEEEecCCCCEEEEEeC----------CCeEEEEEccCcceeEeeeeeccC-----
Q 011224 223 GQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSC----------DKTAIVWDVKTEEWKQQFEFHSGP----- 286 (490)
Q Consensus 223 g~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~----- 286 (490)
+.|.+.|..... +..+..-..+- .+ ++|+++.|+.+.. +..|.+||+.+.+.+..+.....|
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999976543 34444333332 34 8999999887766 789999999999988777643221
Q ss_pred --eEEEEccCC--ceEEEEcC-CCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEE--------eCCCeEEEEe
Q 011224 287 --TLDVDWRNN--VSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC--------SDDVTAKIWN 353 (490)
Q Consensus 287 --~~~~~~~~~--~~~~~~~~-d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~--------~~dg~i~iwd 353 (490)
...+.+.++ ..++..-. ++.|.+.|+...+.+..+.- |++.+++.. +.||......
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEEEE
Confidence 112233322 23333323 67778888777776655432 333333322 2333333222
Q ss_pred cCC-Cce-eeeecc-cc--ccEEE-EEEcC-CCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-----eEEEEeeC-----
Q 011224 354 MKQ-DKY-VHDLRE-HS--KEIYT-IRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG-----KLLYSLNG----- 416 (490)
Q Consensus 354 ~~~-~~~-~~~~~~-~~--~~i~~-v~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-----~~~~~~~~----- 416 (490)
+.. ++. ...... +. .++.. -.|.+ ++. .+++ ... |+|.+.|+... .....+..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~--------~~~v-s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR--------LVWP-TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCc--------EEEE-ecC-CeEEEEecCCCcceecceeeecccccccc
Confidence 211 110 000000 00 00000 01222 332 3333 333 99999996432 22222211
Q ss_pred --CCCCEEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCC-EEEEEE-CCCc
Q 011224 417 --HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAACF-ANHT 482 (490)
Q Consensus 417 --h~~~v~~l~~spdg~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~-~la~~~-~d~~ 482 (490)
..+.+.-++++|+++.|..+.. .+.|.++|..+++.+..+.....+..++++|||+ +|.+.. .++.
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc
Confidence 1233455999999988877432 2579999999999999988777899999999999 777654 5788
Q ss_pred EEEEEee
Q 011224 483 VCVLDFR 489 (490)
Q Consensus 483 v~v~~~~ 489 (490)
|.|+|+.
T Consensus 324 VsViD~~ 330 (352)
T TIGR02658 324 LYIFDAE 330 (352)
T ss_pred EEEEECc
Confidence 9999974
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=5.2e-09 Score=101.58 Aligned_cols=224 Identities=18% Similarity=0.358 Sum_probs=152.8
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
.+|.||+..|..+.|+.+.+.|-|...+|.|.+|-+..+....... .+...+-|.+++|+.||..
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi---------------NnRnKSvV~SmsWn~dG~k 129 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI---------------NNRNKSVVVSMSWNLDGTK 129 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh---------------hCcCccEEEEEEEcCCCcE
Confidence 5899999999999999999999999999999999988765321110 1122456899999999999
Q ss_pred EEEEeCCCeEEEEECCCceeE--EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc-------e-eEe---eee
Q 011224 216 LATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-------W-KQQ---FEF 282 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~-~~~---~~~ 282 (490)
+.....||.|.|=.+++..+. .+.+ .-...+.|+++...++.+-..|.+.+||.+..- + +.. +..
T Consensus 130 IcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~ 207 (1189)
T KOG2041|consen 130 ICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN 207 (1189)
T ss_pred EEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence 999999999988777664332 1222 122467899999999989899999999865321 1 110 000
Q ss_pred eccCeEEEEcc---------CCceEEEEcCCCeEEEEEcCC-CcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC-----
Q 011224 283 HSGPTLDVDWR---------NNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----- 347 (490)
Q Consensus 283 ~~~~~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg----- 347 (490)
....+..+.|. +...++.+..+|.+.+..-.. ..|+..-.| -.+..+.|+++|..||.|+.+.
T Consensus 208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCc
Confidence 00112334442 234678888888877765433 334332222 4678899999999999998753
Q ss_pred ----eEEEEecCCCceeeeeccccccEEEEEEcCCC
Q 011224 348 ----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379 (490)
Q Consensus 348 ----~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g 379 (490)
.|.+|.. -|..+.+++.....|++++|-..|
T Consensus 286 ~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 286 TDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred cccceEEEecc-chhheEEEecCCceeeeeEEcCCc
Confidence 4555543 456667777777778887775433
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=2e-11 Score=114.63 Aligned_cols=210 Identities=19% Similarity=0.338 Sum_probs=145.8
Q ss_pred eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC
Q 011224 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 314 (490)
Q Consensus 235 ~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 314 (490)
.+.+.+|+..|..++--.+.+.|++++.|++|++|.++...- .+++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------------------------------~~~t 773 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------------------------------EIGT 773 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------------------------------cccc
Confidence 456789999988887777788899999999999998864310 0111
Q ss_pred CcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc--ccccEEEEEEcCCCCCCCCCCCcEEEE
Q 011224 315 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 315 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
..+..+|..|..+|..+.|-.+.++++++ ||.|.+||.--++++..+.. ..+.+..+..-|+- +...+++
T Consensus 774 saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv------~~~iliA 845 (1034)
T KOG4190|consen 774 SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV------DRHILIA 845 (1034)
T ss_pred ceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccC------cchheee
Confidence 22345678899999999999888888776 88999999877776654321 11222222222221 1223566
Q ss_pred EEECCCcEEEEeCCCCeEEEEee-----CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEE
Q 011224 393 SASFDSTVKLWDVELGKLLYSLN-----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVC 466 (490)
Q Consensus 393 sgs~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~ 466 (490)
.++...+|+++|.+.+.-..+++ +-..-+.+++..|.|++||.|=..|.|.+.|.++|+++..+.... ....++
T Consensus 846 gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla 925 (1034)
T KOG4190|consen 846 GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA 925 (1034)
T ss_pred eccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc
Confidence 66889999999999876554443 233458899999999999999999999999999999988775432 122222
Q ss_pred ECCCCCEEEEEECCCcEEE-EE
Q 011224 467 WNKEGDKIAACFANHTVCV-LD 487 (490)
Q Consensus 467 ~~~~g~~la~~~~d~~v~v-~~ 487 (490)
-|..+.||....|+++.| |.
T Consensus 926 -apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 926 -APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred -CchhHHHHhhcccceeEeeeh
Confidence 244455666666666666 53
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=2.4e-08 Score=108.23 Aligned_cols=266 Identities=11% Similarity=0.101 Sum_probs=159.8
Q ss_pred eEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecc-cccCCCCeEEEEEcCCCCEEEEEe-CC
Q 011224 146 CACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGS-YD 222 (490)
Q Consensus 146 ~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~~~~s~~~~~l~sg~-~d 222 (490)
..+++++. +.++++-+..+.|++||............+.... ..+. ....-.....+++.+++..|+.+. .+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~-----~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGL-----RDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCC-----CCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 46788875 6677777888999999975321100000000000 0000 001112357789999888666554 45
Q ss_pred CeEEEEECCCceeEEecCC-----------------CCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 223 GQARIWSTNGDLKCTLSKH-----------------KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h-----------------~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+.|++++..+....++.+- -..-+.++|+| ++..+++.+.++.|++||..++... .+..
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G-- 722 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG-- 722 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec--
Confidence 7899999876655544321 01236799999 5556677778899999998765421 1110
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeee
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
++.....+ +.. .....-.....++++|+++ ++++-+.++.|++||+.++......
T Consensus 723 -------------------~G~~~~~~---g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 723 -------------------DGYERNLN---GSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred -------------------CCccccCC---CCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 00000000 000 0000112456799999998 5667777899999998876432100
Q ss_pred cc-------------c--------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-------
Q 011224 364 RE-------------H--------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------- 415 (490)
Q Consensus 364 ~~-------------~--------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~------- 415 (490)
.+ . ......++++++|. ++++-+.++.|++||..++.......
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---------LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~ 849 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---------IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK 849 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---------EEEEECCCCEEEEEECCCCeEEEEeccCCcCCC
Confidence 00 0 01124566666664 56777889999999998776543221
Q ss_pred ------CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 416 ------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 416 ------~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
+.-.....|+++++|+++++-+.++.|++|++.+++.
T Consensus 850 dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 850 DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1112467899999999999999999999999998865
No 273
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=4.6e-09 Score=98.27 Aligned_cols=264 Identities=16% Similarity=0.221 Sum_probs=160.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCC---------------
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--------------- 264 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--------------- 264 (490)
..-++..++|||.|.+|++... ..|.+|.....-......| ..|.-+.|+|.++||.+-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 3567889999999999998765 4588887654333322234 4589999999999999976543
Q ss_pred eEEEEEccCcceeEeeeeeccC--eE-EEEccCCceEEEEcCCCeEEEEEcCCCc---ceeEecCCCCCeeEEEEcCCCC
Q 011224 265 TAIVWDVKTEEWKQQFEFHSGP--TL-DVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGS 338 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~~~v~~v~~~~~~~ 338 (490)
.+.+||..++.++..+.....+ .. -+.|..+..+++=--...++++++..+. +...++ ...|....|+|-++
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCC
Confidence 4899999999988887765554 11 2334332222221233456777753221 122221 24577788888643
Q ss_pred --EEE-----EEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE--------ECCCcEEEE
Q 011224 339 --LLA-----SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA--------SFDSTVKLW 403 (490)
Q Consensus 339 --~l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg--------s~dg~i~iw 403 (490)
.|| .++.+++++||.+..++.+.+.......-..+.|.+.|... ++++-- ....++.|+
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~l------l~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYL------LVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceE------EEEEEEeeecccceeccceEEEE
Confidence 233 24567899999998766654433222333567888877521 011111 113567788
Q ss_pred eCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE--eCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEE
Q 011224 404 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 476 (490)
Q Consensus 404 d~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~--s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~ 476 (490)
++....+ .......++|.+.+|+|.++.+++. -.+..+.+++++.. +...+ ..+.=+.+.|+|.+++++.
T Consensus 261 ~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~-Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 261 RITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF-PEQKRNTIFFSPHERYILF 332 (561)
T ss_pred eeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec-CCcccccccccCcccEEEE
Confidence 7763333 2222567899999999998776654 47888999998754 33332 2222234455555554443
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=3.9e-10 Score=98.90 Aligned_cols=267 Identities=20% Similarity=0.406 Sum_probs=167.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc------eeEEecCCCC------------CEEEEEecCCC--CEEEEE
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------LKCTLSKHKG------------PIFSLKWNKKG--DYLLTG 260 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~------~~~~~~~h~~------------~V~~l~~~~~~--~~l~s~ 260 (490)
...|+++.|...|.||++|...|.|.++..+.. ....+++|.- .|..+.|..++ ..|+..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 356899999999999999999999999975432 2234566642 46778887654 357777
Q ss_pred eCCCeEEEEEccCcceeEe--------eeee-ccCeEEEEccCCceEE-EEcCCCeEEEEEcCCCcceeEe-cCCCCCee
Q 011224 261 SCDKTAIVWDVKTEEWKQQ--------FEFH-SGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 329 (490)
Q Consensus 261 s~D~~v~iwd~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~ 329 (490)
+.|++|++|-+....+.-. +... .+++.+..- ..+- .+..|..|.. .|.+.+ ..|...|+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iiaa------~p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIAA------KPCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHH---hhcccccccceEEEe------ccceeccccceeEee
Confidence 8899999998866532111 1100 112111100 0000 0001111111 233334 46888899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCCce---eeeeccc-----cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEE
Q 011224 330 CVKWDPTGSLLASCSDDVTAKIWNMKQDKY---VHDLREH-----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 401 (490)
Q Consensus 330 ~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 401 (490)
++.++.|...++++ .|=.|.+|++.--.. +..++.| ...|++..|+|... +++...+..|.|+
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c--------n~fmYSsSkG~Ik 247 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC--------NVFMYSSSKGEIK 247 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc--------ceEEEecCCCcEE
Confidence 99999998888765 577899998753211 2222222 23466667777643 4666777889999
Q ss_pred EEeCCCCe------EEEE--ee--------CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC-eEEEEEec------
Q 011224 402 LWDVELGK------LLYS--LN--------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KIVKTYTG------ 458 (490)
Q Consensus 402 iwd~~~~~------~~~~--~~--------~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~-~~~~~~~~------ 458 (490)
+-|++... .++. +. +-...|..+.|+++|+||++-+. -+|+|||+... ..+++++-
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence 99998432 1221 11 12346888999999999998654 48999999764 34666522
Q ss_pred -------CCCE---EEEEECCCCCEEEEEECCCcEEEE
Q 011224 459 -------NGGI---FEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 459 -------~~~v---~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+..| ..+.||.|.+++.+|+.+...-+|
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 1233 468899999999999877655544
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=9.8e-11 Score=110.10 Aligned_cols=291 Identities=16% Similarity=0.255 Sum_probs=185.8
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCC-CCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT-SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...+.||+..|++++--.+.+-++++|.|.+|++|.+.... ..++. .+.-.+..|.++|.++.|-.+-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-----------aCQfTY~aHkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-----------ACQFTYQAHKKPIHDIGFLADL 796 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-----------eeeeEhhhccCcccceeeeecc
Confidence 34578999999998877778889999999999999985421 11110 1122345678899999999998
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEEe--cCCCCCEEEEEecC--CCCEEEE-EeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 214 TLLATGSYDGQARIWSTN-GDLKCTL--SKHKGPIFSLKWNK--KGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~-~~~~~~~--~~h~~~V~~l~~~~--~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
+++++ .||.|.+||.- +...... ....+++..+..-+ +.+.++. |+...+|+++|.+..+|...+....
T Consensus 797 r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn--- 871 (1034)
T KOG4190|consen 797 RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN--- 871 (1034)
T ss_pred ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEecc---
Confidence 88775 57899999953 2221111 11122233333333 3344444 4788999999999988776554211
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
-.+..+.+.|++.-+.|+.++.+-..|.|.+.|.++++.+...+...
T Consensus 872 ---------------------------------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 872 ---------------------------------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred ---------------------------------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc
Confidence 12234567899999999999999999999999999999887766543
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE-EeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL-WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i-wd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.....++- |... .|+....|.++.+ |....+...++.+.-..+..-+ -.-|.-|+++.....+.+|-
T Consensus 919 cdllqlaa-psdq---------~L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 919 CDLLQLAA-PSDQ---------ALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred chhhhhcC-chhH---------HHHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 33333321 2221 4666667888888 8877777666655332222111 12355677776666777774
Q ss_pred cCCC-e------EEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 447 LKEG-K------IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 447 ~~~~-~------~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
-... . .++.-+-.+..++++--|-..-+.+|...|.|.+.
T Consensus 987 d~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 987 DSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred cchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceeec
Confidence 2110 0 11111123456788888888777788888888764
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.9e-07 Score=83.30 Aligned_cols=259 Identities=14% Similarity=0.186 Sum_probs=165.4
Q ss_pred CCeEEEEECCCc----eeEEecCCCCCEEEEEecCCCCEEEEEeCC---CeEEEEEccC--ccee--EeeeeeccCeEEE
Q 011224 222 DGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KTAIVWDVKT--EEWK--QQFEFHSGPTLDV 290 (490)
Q Consensus 222 dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~v~iwd~~~--~~~~--~~~~~~~~~~~~~ 290 (490)
+..|++|+++.. ....+..+.+.++-|+|+|++++|+++..+ |.|..|.+.. +.+. ........+..-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 468999987632 112344566778899999999999988665 6666665543 4432 2222223333445
Q ss_pred EccCCc--eEEEEcCCCeEEEEEcCCCcce---eEecCCCCC----------eeEEEEcCCCCEEEEEeC-CCeEEEEec
Q 011224 291 DWRNNV--SFATSSTDNMIYVCKIGENRPI---KTFAGHQGE----------VNCVKWDPTGSLLASCSD-DVTAKIWNM 354 (490)
Q Consensus 291 ~~~~~~--~~~~~~~d~~i~~~~~~~~~~~---~~~~~h~~~----------v~~v~~~~~~~~l~s~~~-dg~i~iwd~ 354 (490)
+...+. .|++....+.|.++.++....+ .....|.+. +-+..+.|++++|+++.- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 554444 3445556788999988653221 122234444 778999999999988763 237899999
Q ss_pred CCCceeeee---ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeC---------CCCCE
Q 011224 355 KQDKYVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNG---------HREPV 421 (490)
Q Consensus 355 ~~~~~~~~~---~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~---------h~~~v 421 (490)
..+++...- ......-.-|.|+|++. ..-+..=-+++|-+|..... ..+..+.. -....
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k--------~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGK--------YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCc--------EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 876543211 12334457788988886 33345567899999998763 22222211 12356
Q ss_pred EEEEECCCCCEEEEEeC-CCcEEEEEcCC--CeE--EEEEecCCC-EEEEEECCCCCEEEEEEC-CCcEEEEEe
Q 011224 422 YSLAFSPTGEYLASGSL-DKSMHIWSLKE--GKI--VKTYTGNGG-IFEVCWNKEGDKIAACFA-NHTVCVLDF 488 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~-dg~i~iw~~~~--~~~--~~~~~~~~~-v~~~~~~~~g~~la~~~~-d~~v~v~~~ 488 (490)
-+|..+|||+||.++.. ...|-+|.+.. |++ +.....++. .-++.|+|.|++|+++.. +.+|.||-.
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 78999999999988643 23788888753 443 233334444 678999999999988866 456777754
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=6.1e-10 Score=108.28 Aligned_cols=292 Identities=20% Similarity=0.335 Sum_probs=182.3
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC--CEEEEE
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLATG 219 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~--~~l~sg 219 (490)
.+++.++.++|.|+-+|.++.-|.+ +-|+...-. .+ ..+.+. ..-.|-...|++.. .+-++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~------pp---r~l~h~------tpw~vad~qws~h~a~~~wiVs 87 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFT------PP---RWLHHI------TPWQVADVQWSPHPAKPYWIVS 87 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCC------Cc---eeeecc------CcchhcceecccCCCCceeEEe
Confidence 4578899999999988888876643 445543210 00 011111 12336667777643 344444
Q ss_pred eCCCeEEEEECC----CceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcce-eEeeeeeccCeEEEEcc
Q 011224 220 SYDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 220 ~~dg~i~iw~~~----~~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 293 (490)
.......+|++. ......+.+|+.+|+.+.|+|+. ..+++++.|-.+..||+++... +..+.........+.|.
T Consensus 88 ts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwn 167 (1081)
T KOG0309|consen 88 TSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWN 167 (1081)
T ss_pred cCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeec
Confidence 455666788853 23445678999999999999976 4688999999999999987542 22222222233345553
Q ss_pred C-CceEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEEecCCCcee-eeecccccc
Q 011224 294 N-NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV-HDLREHSKE 369 (490)
Q Consensus 294 ~-~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~ 369 (490)
. +..+.+++..+-|++|+++.+ .|+..+++|...|+.++|..- ...+.+++.||+|++||....... ........+
T Consensus 168 yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p 247 (1081)
T KOG0309|consen 168 YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP 247 (1081)
T ss_pred ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCc
Confidence 2 223444556678999998865 467788899999999998753 345789999999999997643211 111223456
Q ss_pred EEEEEEcCCCCCCCC-CC-CcEEEEEEECCCcEEEEeCCC-CeEEEEeeCCCCCEEEEEECCCC----------CEEEEE
Q 011224 370 IYTIRWSPTGSGTNN-PN-QQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTG----------EYLASG 436 (490)
Q Consensus 370 i~~v~~~p~g~~~~~-~~-~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg----------~~l~s~ 436 (490)
+..-++-|-|.+... |. +..++.---.+.....|+..+ .+.++++.||.+.|....|-..+ --|+|=
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTW 327 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTW 327 (1081)
T ss_pred ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEe
Confidence 666667776653210 00 000111111122233344432 36789999999988776664322 258999
Q ss_pred eCCCcEEEEEcCC
Q 011224 437 SLDKSMHIWSLKE 449 (490)
Q Consensus 437 s~dg~i~iw~~~~ 449 (490)
|.|.++++|-+.+
T Consensus 328 SkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 328 SKDQTLRLWPIDS 340 (1081)
T ss_pred ecCCceEeeeccH
Confidence 9999999998764
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=1.6e-06 Score=78.68 Aligned_cols=268 Identities=14% Similarity=0.214 Sum_probs=162.8
Q ss_pred ccccceeEEEECCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D---~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
.+...++=++|+|+++.|+++-.+ |.|.-|.+.... |.+.. .++......+-+.++++++|+++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-------G~Lt~------ln~~~~~g~~p~yvsvd~~g~~v 103 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-------GRLTF------LNRQTLPGSPPCYVSVDEDGRFV 103 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-------CeEEE------eeccccCCCCCeEEEECCCCCEE
Confidence 455667889999999999998654 667777665310 11111 11111112233788999999999
Q ss_pred EEEeCC-CeEEEEECCC--ce--eEEecCCCCC----------EEEEEecCCCCEEEEEeC-CCeEEEEEccCcceeEee
Q 011224 217 ATGSYD-GQARIWSTNG--DL--KCTLSKHKGP----------IFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 217 ~sg~~d-g~i~iw~~~~--~~--~~~~~~h~~~----------V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~ 280 (490)
+++.+. |.|.++-+.. .+ ......|.++ +....+.|++++|+++.- --.|.+|++..+.+...-
T Consensus 104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~ 183 (346)
T COG2706 104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD 183 (346)
T ss_pred EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc
Confidence 998875 7888887642 21 1233445555 888999999999988753 125777777655432111
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEecCCC-c
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQD-K 358 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iwd~~~~-~ 358 (490)
.. .+ .-...-.-|.|||++++....+ -+++|.+|..+.. .
T Consensus 184 ~~-------------------------------------~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 184 PA-------------------------------------EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred cc-------------------------------------cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 00 01 1122345689999999876555 4899999998763 2
Q ss_pred eeeeecc---------ccccEEEEEEcCCCCCCCCCCCcEEEEEE-ECCCcEEEEeCCC--CeEE--EEeeCCCCCEEEE
Q 011224 359 YVHDLRE---------HSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL--GKLL--YSLNGHREPVYSL 424 (490)
Q Consensus 359 ~~~~~~~---------~~~~i~~v~~~p~g~~~~~~~~~~~l~sg-s~dg~i~iwd~~~--~~~~--~~~~~h~~~v~~l 424 (490)
.+..++. .......|..+|+|+ +|.++ -....|-+|.+.. +++. .....+...-...
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr---------FLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F 296 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGR---------FLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF 296 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCC---------EEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc
Confidence 2222221 123566788889886 34333 2334677776653 3322 1222233335788
Q ss_pred EECCCCCEEEEEeCC-CcEEEEEcC--CCeEEEEEe--cCCCEEEEEE
Q 011224 425 AFSPTGEYLASGSLD-KSMHIWSLK--EGKIVKTYT--GNGGIFEVCW 467 (490)
Q Consensus 425 ~~spdg~~l~s~s~d-g~i~iw~~~--~~~~~~~~~--~~~~v~~~~~ 467 (490)
.|+|+|++|++++.+ ..|.+|.+. +|++..... ......++.|
T Consensus 297 ~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f 344 (346)
T COG2706 297 NINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKF 344 (346)
T ss_pred eeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEE
Confidence 999999999988765 468888775 566543322 1223455555
No 279
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.1e-09 Score=97.14 Aligned_cols=267 Identities=16% Similarity=0.262 Sum_probs=183.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC----ceeEEecCCCCCEEEEEecCCCCEEEEEeC-CCeEEEEEccCcceeEeeeee
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~ 283 (490)
+....+++++++.||.++.|-... .....+..|.+.|.+++.+-++-.+.|.+. |..++++|+.+-..+.-+...
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~ 95 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV 95 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc
Confidence 344568999999999999998654 233345678889999999999988899777 999999998776544322211
Q ss_pred ccCeEEEEcc--CC---ceE-EEEcCCCeEEEEEcCCCc-ceeEe-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 284 SGPTLDVDWR--NN---VSF-ATSSTDNMIYVCKIGENR-PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 284 ~~~~~~~~~~--~~---~~~-~~~~~d~~i~~~~~~~~~-~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
-- .-.+.|. .+ ..+ ++.-.++.+.++|-.... +...+ .-|..+|.++.++|.+..+++....|.|.-|...
T Consensus 96 ~l-Pg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 96 DL-PGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cC-CCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 11 1112221 11 123 334467888888865543 33333 3488999999999999999999999999999876
Q ss_pred C------Ccee---------eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-----
Q 011224 356 Q------DKYV---------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----- 415 (490)
Q Consensus 356 ~------~~~~---------~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~----- 415 (490)
. .+.. ..+........++.|+|++. .+++-+.|..|++++..+|+.++.+.
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---------qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA---------QISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccC---------cccccCcccEEEEEEeccchhhhhhhccchh
Confidence 2 1111 11122334567899999986 46777799999999999887654432
Q ss_pred ---------------------------CCC-CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCE-----
Q 011224 416 ---------------------------GHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI----- 462 (490)
Q Consensus 416 ---------------------------~h~-~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v----- 462 (490)
.|. ..-+.+.|...|++|+-|+.=| |++.++.++.+++.+.....+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~ 324 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRL 324 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhH
Confidence 111 1235688999999999888776 999999999988876332111
Q ss_pred ---------------------EEEEECCCCCEEEEEECCCcEEEE
Q 011224 463 ---------------------FEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 463 ---------------------~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
..+.+.+|-.++++++....+.++
T Consensus 325 sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 325 SLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred HHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 124466677777777776666655
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.09 E-value=1.2e-07 Score=92.64 Aligned_cols=259 Identities=10% Similarity=0.053 Sum_probs=157.9
Q ss_pred CCEEEEEeCCCeEEEEEC-CCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 213 GTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~-~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+..++.++.+|.+..+|. +++....+.-......+.. .++..++.++.++.+..+|..+++..-....... +...-
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE-VLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce-eecCC
Confidence 567888888999999995 4555544332222111222 2467888899999999999999886654433221 11110
Q ss_pred ccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCe-----eEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc
Q 011224 292 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 366 (490)
Q Consensus 292 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 366 (490)
...+..++.+..++.++.++..+++.+..+......+ .+.... +..++.+..+|.+..+|..+++.+......
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 1123345566778999999998877665544322111 111121 246778888999999999888765432211
Q ss_pred cc----cE---EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 367 SK----EI---YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 367 ~~----~i---~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
.. .+ ..+.-+|. . .. -.+..++.+|.++.||..+++.++..... .....+ .++..|+.++.|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~----~--~~-~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~ 288 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPV----V--DG-GQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDAD 288 (377)
T ss_pred cCCCCCchhhhhccCCccE----E--EC-CEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCC
Confidence 00 00 00000010 0 01 14566778999999999999988876521 112222 246678888899
Q ss_pred CcEEEEEcCCCeEEEEEec-CC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 440 KSMHIWSLKEGKIVKTYTG-NG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~~-~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|.|..+|..+|+.+..... .. ...+... .+..|.++..+|.|.++|.+
T Consensus 289 G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 289 GVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred CeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 9999999999988766532 11 1222222 46788888999999998864
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=1e-07 Score=93.31 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=120.0
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCE-EEEEeCC---CeEEEEEccCcceeEeeeeeccCeEEEEccCCceE
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 298 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~-l~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
..|.+-|.++.....+.... .+....|+|+|+. ++..+.+ ..|.++|+.+++...
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-------------------- 227 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-------------------- 227 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------
Confidence 34555555555444343333 7788999999985 5533333 456666766554221
Q ss_pred EEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCC--CeEEEEecCCCceeeeeccccccEEEEEE
Q 011224 299 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDD--VTAKIWNMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
+....+......|+|||+.++ +.+.+ ..|.++|+.++... .+..+........|
T Consensus 228 ----------------------lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~ 284 (419)
T PRK04043 228 ----------------------IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNF 284 (419)
T ss_pred ----------------------EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEE
Confidence 111233445678999998665 34334 45777788776533 33333333345679
Q ss_pred cCCCCCCCCCCCcEEEEEEECCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC---------CcEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---------KSMHI 444 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---------g~i~i 444 (490)
+|+|. .++++....| .|.+.|+..++...... ... ....|||||++|+..+.. ..|.+
T Consensus 285 SPDG~--------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v 353 (419)
T PRK04043 285 VEDDK--------RIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYL 353 (419)
T ss_pred CCCCC--------EEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEE
Confidence 99986 2444443334 57777887776532221 111 224899999998766543 36888
Q ss_pred EEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECC
Q 011224 445 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 445 w~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d 480 (490)
.++.++... .+...+.....+|+|||+.|+.....
T Consensus 354 ~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 354 ISTNSDYIR-RLTANGVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EECCCCCeE-ECCCCCCcCCeEECCCCCEEEEEEcc
Confidence 888887653 33333333468999999988876543
No 282
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.08 E-value=6.2e-09 Score=92.80 Aligned_cols=241 Identities=14% Similarity=0.253 Sum_probs=161.7
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CceeE--EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEc---
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV--- 271 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~--- 271 (490)
.++...|+..-.-|-..-+++.+.|.++|||-.. ..... ....-..+++++.+++....|+.|-..|++.-+.+
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed 100 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED 100 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh
Confidence 3445566666666767778999999999999532 22111 12223567899999999999999999999988854
Q ss_pred -cCcceeEeeeeeccCeEEEEccCC-ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeE
Q 011224 272 -KTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349 (490)
Q Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 349 (490)
+.....+.+..|...+..+-|.-. ..+++.+.|..+.---.+.+..+..+. -....+++.+.-. +...|...|.|
T Consensus 101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqv 177 (404)
T KOG1409|consen 101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDHSGQI 177 (404)
T ss_pred hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEecccccce
Confidence 445566677778888877776533 334444444433211111111111000 0001111222111 44455556666
Q ss_pred EEEec--CCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEeeCCCCCEEEEEE
Q 011224 350 KIWNM--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLNGHREPVYSLAF 426 (490)
Q Consensus 350 ~iwd~--~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~ 426 (490)
.+-.+ ..-.++.++.+|...+++++|.|... +|.+|..|..+.+||+.-.+ ....+.+|...|..+.+
T Consensus 178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~---------~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR---------LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred EEEEEeecCCceEEEEcCcccceEEEEEcCCCc---------EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 55443 33456778899999999999998764 89999999999999987544 34678889999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
-+--+.|.+++.||.|.+|+....
T Consensus 249 ~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhheeeeeccCCCeEEEEeccce
Confidence 888899999999999999998643
No 283
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.07 E-value=1.7e-06 Score=78.96 Aligned_cols=222 Identities=15% Similarity=0.176 Sum_probs=143.6
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 206 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 206 ~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+.+|.+ ++.++++-...+.|+.|+..+.....+.... ..++++...+..|+.+...+. .++|+.+++.........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccC
Confidence 457887 6777777777899999998877655443333 677788733356666665544 555888775433221100
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC-CCCCeeEEEEcCCCCEEEEEeCC--------CeEEEEecC
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNMK 355 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d--------g~i~iwd~~ 355 (490)
.. .....+.+++.|+|++.++.... |.|..++..
T Consensus 81 -------------------------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 81 -------------------------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp -------------------------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred -------------------------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 01 12346788999999988777654 456666655
Q ss_pred CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC--C-----eEEEEeeCCCCCEEEEEECC
Q 011224 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--G-----KLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--~-----~~~~~~~~h~~~v~~l~~sp 428 (490)
++ +..+...-.....++|+|++. .++++-+..+.|..+++.. . +....+....+....+++.+
T Consensus 124 -~~-~~~~~~~~~~pNGi~~s~dg~--------~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~ 193 (246)
T PF08450_consen 124 -GK-VTVVADGLGFPNGIAFSPDGK--------TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS 193 (246)
T ss_dssp -SE-EEEEEEEESSEEEEEEETTSS--------EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT
T ss_pred -Ce-EEEEecCcccccceEECCcch--------heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC
Confidence 33 222333345568899999986 3556777888899988852 2 11222333333478899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEE-CCCCCEEEEEE
Q 011224 429 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCW-NKEGDKIAACF 478 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~-~~~g~~la~~~ 478 (490)
+|++.++.-..+.|.+++.. |+++..+... ..+++++| -|+.+.|...+
T Consensus 194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99998888889999999987 8888877654 57999999 46767665543
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=3.9e-07 Score=80.09 Aligned_cols=236 Identities=18% Similarity=0.239 Sum_probs=124.3
Q ss_pred EEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 011224 148 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 227 (490)
Q Consensus 148 ~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~i 227 (490)
++.+++|++||.- .|..|-|=...+.=. ..+..+.- .......=.-++||||+.+||.+...|+|++
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~-----------si~~kcqV-pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFS-----------SIIGKCQV-PKDPNPQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCch-----------heeEEEec-CCCCCchheEEEECCCCcEEEEEcCCCeEEE
Confidence 4667888888765 566665544322100 00111111 1111233467899999999999999999999
Q ss_pred EECCCceeEEecCC-------CCCEEEEEecCCC------CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 228 WSTNGDLKCTLSKH-------KGPIFSLKWNKKG------DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 228 w~~~~~~~~~~~~h-------~~~V~~l~~~~~~------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
+|+.+.....+..- ..+|-++.|.+-. ..|++-..+|.++-|-+..
T Consensus 70 fdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~--------------------- 128 (282)
T PF15492_consen 70 FDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV--------------------- 128 (282)
T ss_pred EecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc---------------------
Confidence 99887655444321 1344444443211 0122222233332222110
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecC-CCCCeeEEEEcCCCCEEEEEeCCCe-----------EEEEecCCCceeee
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVT-----------AKIWNMKQDKYVHD 362 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~dg~-----------i~iwd~~~~~~~~~ 362 (490)
+...+.... ....|.. +...|+++.++|..++|+.||.... +.-|.+-.+.+.
T Consensus 129 ------gt~q~y~e~-------hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py-- 193 (282)
T PF15492_consen 129 ------GTNQGYQEN-------HSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY-- 193 (282)
T ss_pred ------ccCCcceee-------EEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCc--
Confidence 001111100 0112222 3567999999999888877764321 222222221111
Q ss_pred eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc------EEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE
Q 011224 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 363 ~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~------i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~ 436 (490)
+..++.+.|+. ..+|.+-+.+...........|..|..||||++||+.
T Consensus 194 --------------------------yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i 247 (282)
T PF15492_consen 194 --------------------------YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI 247 (282)
T ss_pred --------------------------EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence 11112221211 1233322222211122245679999999999999999
Q ss_pred eCCCcEEEEEcCCCeEEEEEec
Q 011224 437 SLDKSMHIWSLKEGKIVKTYTG 458 (490)
Q Consensus 437 s~dg~i~iw~~~~~~~~~~~~~ 458 (490)
..+|.|.+|++..-++...+..
T Consensus 248 h~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 248 HFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EcCCeEEEEecCcchhhcccch
Confidence 9999999999988777666643
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.01 E-value=4e-07 Score=84.84 Aligned_cols=215 Identities=14% Similarity=0.179 Sum_probs=149.7
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCcceeEeeee-ec-----cCeE--------EEEccCCceEEEEcCCCeEEEEEcCCC
Q 011224 250 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-HS-----GPTL--------DVDWRNNVSFATSSTDNMIYVCKIGEN 315 (490)
Q Consensus 250 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~-----~~~~--------~~~~~~~~~~~~~~~d~~i~~~~~~~~ 315 (490)
.+.+|+.++-. .-|.|.+||+.+..+...-.. .. .+.. .....+...++..+ -|..++.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCC
Confidence 35577776643 457899999987654331100 00 0000 01112223333333 344555554444
Q ss_pred cceeEecCCCCCeeEEEEcCCCCEEEEEeCCC-eEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
-.++ .+|.+.|.-..+.-+++-++.|..|| .+-|+|..++.. ..+...-+.|.+++.+|+|. .++.+
T Consensus 352 ~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK---------~~vva 419 (668)
T COG4946 352 YSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGK---------KVVVA 419 (668)
T ss_pred eeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCc---------EEEEE
Confidence 3333 36777788888888888899999999 899999987753 34455667899999999997 67778
Q ss_pred ECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC----CcEEEEEcCCCeEEEEEecCCCEEEEEECCC
Q 011224 395 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 470 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d----g~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~ 470 (490)
.....|-+.|+.++.....-+...+-|+..+|||++++||-+--+ ..|+++|..++++....+..+.=++.+|.||
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d 499 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPD 499 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCC
Confidence 888889999999998766555556779999999999999976554 4799999999998877665555678899999
Q ss_pred CCEEEEEE
Q 011224 471 GDKIAACF 478 (490)
Q Consensus 471 g~~la~~~ 478 (490)
|++|-.-+
T Consensus 500 ~ryLYfLs 507 (668)
T COG4946 500 GRYLYFLS 507 (668)
T ss_pred CcEEEEEe
Confidence 99766443
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=2.5e-07 Score=91.12 Aligned_cols=329 Identities=19% Similarity=0.241 Sum_probs=201.3
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC---------
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--------- 212 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~--------- 212 (490)
...-.++.|+|.|- +|-|+. ..|.+-|..+-+.+ ....-|...|+.+.|.|-
T Consensus 15 ~sN~~A~Dw~~~GL-iAygsh-slV~VVDs~s~q~i-----------------qsie~h~s~V~~VrWap~~~p~~llS~ 75 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGL-IAYGSH-SLVSVVDSRSLQLI-----------------QSIELHQSAVTSVRWAPAPSPRDLLSP 75 (1062)
T ss_pred cccccccccCccce-EEEecC-ceEEEEehhhhhhh-----------------hccccCccceeEEEeccCCCchhccCc
Confidence 33367889998873 444443 45666665432211 111224567888888652
Q ss_pred ---CCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecC---CC-CEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 213 ---GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK---KG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 213 ---~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~---~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
..+|+++...|.|.+||.- ......+..|.++|..++|-+ +. ..|++-..-.++.+||..+|+..-.+....
T Consensus 76 ~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~ 155 (1062)
T KOG1912|consen 76 SSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH 155 (1062)
T ss_pred cccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCC
Confidence 2367788888999999965 344567788899999999865 33 456777777899999999998665555444
Q ss_pred cCeEEEEc--cCCceEEEEcCCCeEEEEEcCC------------------------------------------------
Q 011224 285 GPTLDVDW--RNNVSFATSSTDNMIYVCKIGE------------------------------------------------ 314 (490)
Q Consensus 285 ~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~------------------------------------------------ 314 (490)
....++.+ .+...|...+..|.+.+++.-.
T Consensus 156 ~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 156 EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 43333333 2344555555555555554311
Q ss_pred --------------------------CcceeEecCCCCCeeEEEEcCCC--CEEEEEeCCCeEEEEecCC----------
Q 011224 315 --------------------------NRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQ---------- 356 (490)
Q Consensus 315 --------------------------~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~dg~i~iwd~~~---------- 356 (490)
..++....--.+.+.-+.+-|++ ..+++...||.+.||--+.
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence 00001111112223345566665 4688999999999996443
Q ss_pred ------Cceeeeeccccc--c--------------------------EE-----------------E-------------
Q 011224 357 ------DKYVHDLREHSK--E--------------------------IY-----------------T------------- 372 (490)
Q Consensus 357 ------~~~~~~~~~~~~--~--------------------------i~-----------------~------------- 372 (490)
+..++.++.... + +. .
T Consensus 316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~ 395 (1062)
T KOG1912|consen 316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT 395 (1062)
T ss_pred hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc
Confidence 111111110000 0 00 0
Q ss_pred --EEEcCCCCC-----------------------CCCC-CCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEE
Q 011224 373 --IRWSPTGSG-----------------------TNNP-NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 373 --v~~~p~g~~-----------------------~~~~-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 426 (490)
+..+.+|.. .+.| .-..++|.|...|+|.++|+.++..-..+..|...|.++-|
T Consensus 396 ~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW 475 (1062)
T KOG1912|consen 396 SLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEW 475 (1062)
T ss_pred cccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeee
Confidence 000111100 0000 01236899999999999999999888888899999999999
Q ss_pred CCCCCEEE---------EEeCCCcEEEEEcCCCeEE--EEEec--CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 427 SPTGEYLA---------SGSLDKSMHIWSLKEGKIV--KTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 427 spdg~~l~---------s~s~dg~i~iw~~~~~~~~--~~~~~--~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
-....++- +|+.-+.+.+-++++|.-. +..++ ..+|..+.-|..|.+||..+.+.-+.+||+|
T Consensus 476 ~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 476 LGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred ccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 76655432 2223356788889888542 22222 3468899999999999999999999999985
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=99.00 E-value=7.9e-07 Score=92.09 Aligned_cols=272 Identities=12% Similarity=0.224 Sum_probs=154.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
..|.++.|..+..-++.+...|.|.+-|.+.........-.+.|.+++|+|++..++..+..+++.+-+- +...+....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccc
Confidence 5799999999999999999999999998776655555556678999999999999998888888776431 111111111
Q ss_pred ee-----ccCeEEEEccCC-ceEEEEcCCCeEEEEE-cCCCcceeEecCCCCCeeEEEEcCCCCEEEEE-----eCCCeE
Q 011224 282 FH-----SGPTLDVDWRNN-VSFATSSTDNMIYVCK-IGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-----SDDVTA 349 (490)
Q Consensus 282 ~~-----~~~~~~~~~~~~-~~~~~~~~d~~i~~~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-----~~dg~i 349 (490)
.+ .+....+.|... ..|- ++... ...-. +...+......-+ ..=++|.|--||+++|+. ..-..|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfr-gs~gr-~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFR-GSEGR-QAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccceecccccceeee-cchhh-hcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 10 011222223211 1110 00000 00000 0000000000011 123469999999999873 233799
Q ss_pred EEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE---ECCCcEEEEeCC---CCeEEEEeeCCCCCEEE
Q 011224 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVE---LGKLLYSLNGHREPVYS 423 (490)
Q Consensus 350 ~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg---s~dg~i~iwd~~---~~~~~~~~~~h~~~v~~ 423 (490)
+|||-. +.+-..-......-.+++|-|.|. ++++- ..|+.|.+|.-. -|.....+......|..
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs---------~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGS---------LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCC---------eEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 999976 433222222233446789999886 44443 345678888632 22222222323345899
Q ss_pred EEECCCCCEEEE---EeCCCcEEEEEcCCCe--EEEEEecCCCEEEEEECCCCC-EEEEEECCCcEEEEEe
Q 011224 424 LAFSPTGEYLAS---GSLDKSMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDF 488 (490)
Q Consensus 424 l~~spdg~~l~s---~s~dg~i~iw~~~~~~--~~~~~~~~~~v~~~~~~~~g~-~la~~~~d~~v~v~~~ 488 (490)
|+|+.++..||+ ......|++|-+.+.. +-+.+.-.... -+-|+|--. .|..-..+|.+.|++|
T Consensus 295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence 999999999987 4445569999988754 22222222211 177888432 2222225666666655
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=4.8e-07 Score=88.57 Aligned_cols=192 Identities=13% Similarity=0.044 Sum_probs=113.8
Q ss_pred CeEEEEEcCCCCE-EEEEeCC---CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEE-EeCC--CeEEEEEccCcc
Q 011224 203 DVTTLDWNGEGTL-LATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCD--KTAIVWDVKTEE 275 (490)
Q Consensus 203 ~V~~~~~s~~~~~-l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D--~~v~iwd~~~~~ 275 (490)
.+....|+|||+. ++..+.+ ..|.++++.+.....+....+.+....|+|+|..++. .+.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 5678899999984 5544443 5688888876655555555666777889999987654 3333 234444544432
Q ss_pred eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CC--eEEEE
Q 011224 276 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV--TAKIW 352 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg--~i~iw 352 (490)
.. .+..+.+......|+|||+.|+-.+. .+ .|.+.
T Consensus 269 ~~------------------------------------------~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 269 LT------------------------------------------QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EE------------------------------------------EcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 11 11212222234579999987765553 33 56777
Q ss_pred ecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC--------CcEEEEeCCCCeEEEEeeCCCCCEEEE
Q 011224 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--------STVKLWDVELGKLLYSLNGHREPVYSL 424 (490)
Q Consensus 353 d~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~l 424 (490)
|+.++...+.... .. ....|+|+|. .++++.... ..|.+.|+..+.. ..+... ......
T Consensus 307 dl~~g~~~rlt~~-g~--~~~~~SPDG~--------~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p 373 (419)
T PRK04043 307 KLNSGSVEQVVFH-GK--NNSSVSTYKN--------YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFP 373 (419)
T ss_pred ECCCCCeEeCccC-CC--cCceECCCCC--------EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCe
Confidence 8877665332211 11 1248999986 233443332 3688888887754 334332 233458
Q ss_pred EECCCCCEEEEEeCC-C--cEEEEEcCC
Q 011224 425 AFSPTGEYLASGSLD-K--SMHIWSLKE 449 (490)
Q Consensus 425 ~~spdg~~l~s~s~d-g--~i~iw~~~~ 449 (490)
.|+|||++|+-.+.+ + .+.+.++..
T Consensus 374 ~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 374 RFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 999999988765533 2 356666643
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.98 E-value=2.5e-07 Score=80.09 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=141.2
Q ss_pred EEEEecC-----CCCEEEEEeCCCeEEEEEccCcceeEee-eeeccCeEEE--EccCCceEEEEcCCCeEEEEEcCCCcc
Q 011224 246 FSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDV--DWRNNVSFATSSTDNMIYVCKIGENRP 317 (490)
Q Consensus 246 ~~l~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~d~~i~~~~~~~~~~ 317 (490)
.++.|-| ...+|+.|+.-|...+|.+.+.+....+ ..+...+.-. .......+..++.|.++.+.++..+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 3455555 3358999999999999999876543322 2222211111 011233455677777777666654332
Q ss_pred eeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce-eee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 318 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 318 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
-.......-.++++++++|++++++.+....|..|.+..... +.. .......-.+..|+... ..+|++
T Consensus 151 ~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~---------~~FAv~ 221 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND---------LQFAVV 221 (344)
T ss_pred cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc---------ceEEEE
Confidence 211111112378999999999999999999999998865432 221 12222334556666554 378999
Q ss_pred ECCCcEEEEeCCCCeEEE-----EeeCCCCCEEEEEECCCCC--EEEEEeCCCcEEEEEcCCCeEEEEEec--------C
Q 011224 395 SFDSTVKLWDVELGKLLY-----SLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKTYTG--------N 459 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~spdg~--~l~s~s~dg~i~iw~~~~~~~~~~~~~--------~ 459 (490)
+.||++.|||++...... +-..|.+.|..+.|+|-|. +|.-.-.-+.+++-|+++++-.+.+.. .
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~ 301 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHN 301 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccc
Confidence 999999999998654322 2345889999999998763 555556678899999999875444321 1
Q ss_pred -CCEEEEEECCCCCEEEEE
Q 011224 460 -GGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 460 -~~v~~~~~~~~g~~la~~ 477 (490)
..++...|+.++..+-+.
T Consensus 302 tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 302 TQHIFGTNFNNENESNDVK 320 (344)
T ss_pred ccccccccccCCCcccccc
Confidence 236777777777544443
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=9.7e-09 Score=93.56 Aligned_cols=166 Identities=14% Similarity=0.182 Sum_probs=104.8
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 011224 146 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 225 (490)
Q Consensus 146 ~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i 225 (490)
..+..+|.+++||.+..+....++++...... ...+...+... ....+..+..+.........+....+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~----~kl~~~~~v~~-------~~~ai~~~~~~~sv~v~dkagD~~~~ 134 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG----AKLLDVSCVPK-------RPTAISFIREDTSVLVADKAGDVYSF 134 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc----ceeeeEeeccc-------CcceeeeeeccceEEEEeecCCceee
Confidence 34455666677776666666555554432210 00011111110 12234444444444444445555667
Q ss_pred EEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCC
Q 011224 226 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 305 (490)
Q Consensus 226 ~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 305 (490)
.+|.........+-+|-+-++.|+|+|++.+++++..|..||+-....--
T Consensus 135 di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f------------------------------ 184 (390)
T KOG3914|consen 135 DILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF------------------------------ 184 (390)
T ss_pred eeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc------------------------------
Confidence 77765533334566899999999999999999999999999986432211
Q ss_pred eEEEEEcCCCccee-EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 306 MIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 306 ~i~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
.+. -+-||+..|..++.-+ +..|++||.|+++++||+.+++.++++.
T Consensus 185 -----------~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 185 -----------VIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -----------chhhhccccHhheeeeeecc-CceeeecCCCCcEEEEecccCCcccccc
Confidence 011 1347999999998875 4568999999999999999999887654
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.97 E-value=3.6e-06 Score=78.67 Aligned_cols=168 Identities=16% Similarity=0.174 Sum_probs=120.1
Q ss_pred EcC-CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCC-eEEEEEccCcceeEeeeeeccC
Q 011224 209 WNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-TAIVWDVKTEEWKQQFEFHSGP 286 (490)
Q Consensus 209 ~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~ 286 (490)
|++ +|.+++..+. |.+.|.+........ .+|.+.|.-..+..+++-++.|..|| .+-|+|..+++.. .+....+.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~ 403 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGN 403 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccc
Confidence 443 6788887775 677776655443322 35777788888888888899999999 8999999887643 34455566
Q ss_pred eEEEEccCCc-eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC----eEEEEecCCCceee
Q 011224 287 TLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----TAKIWNMKQDKYVH 361 (490)
Q Consensus 287 ~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~ 361 (490)
+..+....+. .++.+.....+++.++.++.+...=....+-|+.++|||+++++|-+--+| .|+++|+.+++...
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 7777776664 466667777899999998877655445567799999999999999876665 68999999887653
Q ss_pred eeccccccEEEEEEcCCCC
Q 011224 362 DLREHSKEIYTIRWSPTGS 380 (490)
Q Consensus 362 ~~~~~~~~i~~v~~~p~g~ 380 (490)
.. ....-=++-+|.|++.
T Consensus 484 vT-T~ta~DfsPaFD~d~r 501 (668)
T COG4946 484 VT-TPTAYDFSPAFDPDGR 501 (668)
T ss_pred ec-CCcccccCcccCCCCc
Confidence 22 2222224456666664
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=1.1e-09 Score=108.57 Aligned_cols=263 Identities=17% Similarity=0.286 Sum_probs=169.2
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
+.+++.|+..-+|++||-+.++|+.|+-.|.|+++++.+|.. .++++.|..+|+-+.=+-+|.
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------e~s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------EESVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------cccccccccccccccccCCcc
Confidence 457788999999999999999999999999999999988742 345677888999998888988
Q ss_pred EEEEEeCC-C-eEEEEECCC--ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 215 LLATGSYD-G-QARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 215 ~l~sg~~d-g-~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
.+++.+.- . ...+|+... +..+++. .-.++.|+.....-+.|..-....+||++|+....++....
T Consensus 1157 ~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~------ 1226 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT------ 1226 (1516)
T ss_pred eeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc------
Confidence 77665443 2 567898653 2233332 23567787654443444444567888888876444321100
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccE
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 370 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 370 (490)
.+.+..-+++.|+|+..+|+ +|| .+||.+...-++.|.... ..
T Consensus 1227 -------------------------------~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~ 1269 (1516)
T KOG1832|consen 1227 -------------------------------VTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DY 1269 (1516)
T ss_pred -------------------------------hhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-ec
Confidence 01111235677888887776 455 378887766665554322 11
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEe------CC-----
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS------LD----- 439 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s------~d----- 439 (490)
..-.|+|.|. -+++ - --|||+++.+.+....... -..|.|+..|..+...- .|
T Consensus 1270 ~~G~FHP~g~--------eVII-N-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmYa~~~~~d~~sdvh~~r 1333 (1516)
T KOG1832|consen 1270 GGGGFHPSGN--------EVII-N-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMYAMLNIEDVMSDVHTRR 1333 (1516)
T ss_pred ccccccCCCc--------eEEe-e-----chhhhhHHHHHHhcCcccc--ceEEEeccCccchhhhhhhhhhhhhhcccc
Confidence 1223555553 2222 2 2478888877765554322 25677877776554322 00
Q ss_pred ------CcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEE
Q 011224 440 ------KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 440 ------g~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~ 477 (490)
...+-|+..+.+-+.++.....+.++|-+|...+|+.-
T Consensus 1334 ~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1334 VKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 23556677777788888888888899988888777654
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.93 E-value=3.9e-06 Score=82.32 Aligned_cols=305 Identities=12% Similarity=0.076 Sum_probs=171.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEECC-
Q 011224 154 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN- 231 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~~~~~l~sg~~dg~i~iw~~~- 231 (490)
+..++.++.++.+.-+|..+|+........... ..... .....+. .+.. .+..++.++.+|.+..+|..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~~~--~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t 139 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKD-----GWFSK--NKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED 139 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc-----ccccc--ccccccccccEE--ECCEEEEEcCCCEEEEEECCC
Confidence 567777778888888888777643321111000 00000 0000000 0111 34567778889999999975
Q ss_pred CceeEEecCCCCCEEE-EEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe-----EEEEccCCceEEEEcCCC
Q 011224 232 GDLKCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDWRNNVSFATSSTDN 305 (490)
Q Consensus 232 ~~~~~~~~~h~~~V~~-l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~ 305 (490)
++........ +.+.+ ... .+..++.++.++.+..+|+.+++..-.+....... ..-... ...++.+..++
T Consensus 140 G~~~W~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g 215 (394)
T PRK11138 140 GEVAWQTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNG 215 (394)
T ss_pred CCCcccccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCC
Confidence 4544443322 22221 111 24567778889999999999998765554321100 000001 22355566778
Q ss_pred eEEEEEcCCCcceeEecCCC----C---CeeEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEc
Q 011224 306 MIYVCKIGENRPIKTFAGHQ----G---EVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 306 ~i~~~~~~~~~~~~~~~~h~----~---~v~~v~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
.++..+..+++.+-.+.... . ....+..+| .+..++.++.+|.+..+|..+++.+-..... ....+...
T Consensus 216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~ 293 (394)
T PRK11138 216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVD 293 (394)
T ss_pred EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEE
Confidence 88888877766543332100 0 001111122 2456667778999999999988765432211 11111110
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC-CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 455 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~ 455 (490)
.+ .|..++.+|.+..+|..+++.++....... ...+... .+.+|+.++.||.|.+.|..+|+++..
T Consensus 294 -~~----------~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 294 -GG----------RIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred -CC----------EEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 11 355677899999999999988876532111 1122222 245778889999999999999999877
Q ss_pred EecC-CCEEE-EEECCCCCEEEEEECCCcEEEEEe
Q 011224 456 YTGN-GGIFE-VCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 456 ~~~~-~~v~~-~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
+... ..+.+ ... .+..|..++.+|.|..+.+
T Consensus 361 ~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 361 QKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 6542 22322 222 3568888899999887753
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=1.8e-06 Score=78.40 Aligned_cols=216 Identities=19% Similarity=0.158 Sum_probs=134.3
Q ss_pred CCeEEEEEC-CCceeEEecC---CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 222 DGQARIWST-NGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 222 dg~i~iw~~-~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
+|+|..||. .+.......- ....+ .. ..+.+.++++++.++.+..||..+++..-.+.......... ......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 577888887 4555544432 22222 11 23356778888999999999999998776666522111111 222333
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEe-cCCC---CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc----
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTF-AGHQ---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE---- 369 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~-~~h~---~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---- 369 (490)
++....++.++.++..+++.+... .... ..........++..++.+..++.|..+|.++++.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 444446779999998888877663 3221 11122223334788888888999999999999987666543211
Q ss_pred E-------EEEEEcCCCCCCCCCCCcEEEEEEECCCc-EEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCc
Q 011224 370 I-------YTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 441 (490)
Q Consensus 370 i-------~~v~~~p~g~~~~~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~ 441 (490)
+ ..+.+ .++ .+..++.++. +.+ |+.+++.++... . ..+..+ ..+++..|+.++.++.
T Consensus 159 ~~~~~~~~~~~~~-~~~----------~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~~-~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 159 ISSFSDINGSPVI-SDG----------RVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYSL-PSVDGGTLYVTSSDGR 223 (238)
T ss_dssp EEEETTEEEEEEC-CTT----------EEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECEC-EECCCTEEEEEETTTE
T ss_pred eeeecccccceEE-ECC----------EEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccCC-ceeeCCEEEEEeCCCE
Confidence 1 11111 111 3555666775 555 999999877554 2 223331 3467788888889999
Q ss_pred EEEEEcCCCeEEEE
Q 011224 442 MHIWSLKEGKIVKT 455 (490)
Q Consensus 442 i~iw~~~~~~~~~~ 455 (490)
|.+||+.+|+.+..
T Consensus 224 l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 224 LYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEEECCCCCEEeE
Confidence 99999999998754
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=3.7e-08 Score=89.85 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=70.2
Q ss_pred eEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee-ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC
Q 011224 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397 (490)
Q Consensus 319 ~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d 397 (490)
....||-..+..|+|+||+++|+++..|..||+-.+..--.+..+ -+|..-|.+++.-++- .|+|||.|
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~----------~LlS~sGD 214 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY----------LLLSGSGD 214 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc----------eeeecCCC
Confidence 345689999999999999999999999999999776554444444 3588888888876653 58999999
Q ss_pred CcEEEEeCCCCeEEEEe
Q 011224 398 STVKLWDVELGKLLYSL 414 (490)
Q Consensus 398 g~i~iwd~~~~~~~~~~ 414 (490)
++|++||+.+|+.+.++
T Consensus 215 ~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTC 231 (390)
T ss_pred CcEEEEecccCCccccc
Confidence 99999999999988654
No 296
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=5.6e-09 Score=64.90 Aligned_cols=37 Identities=49% Similarity=0.917 Sum_probs=35.0
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEe
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 170 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd 170 (490)
.+.++++|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4578999999999999999999999999999999997
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=1e-07 Score=84.05 Aligned_cols=278 Identities=17% Similarity=0.277 Sum_probs=164.1
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCC-----CCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC--C
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-----GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--T 214 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~--~ 214 (490)
..-|+++.|...|.+|++|...|.|.+|.-.....-. ..|........++.+ .....|..+.|..++ .
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl-----eieEKin~I~w~~~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL-----EIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc-----cHHHHhhheeeecCCCcc
Confidence 3558999999999999999999999999754322000 011111000001100 112347778887654 4
Q ss_pred EEEEEeCCCeEEEEECCCceeEEe----------cCCCCCEEEEEe--cC--CCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 215 LLATGSYDGQARIWSTNGDLKCTL----------SKHKGPIFSLKW--NK--KGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~~~~----------~~h~~~V~~l~~--~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
.++..+.|.+|++|.+........ ....+++++..- -| ..+..+.+..- .|+|.
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p--~rvya---------- 168 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP--CRVYA---------- 168 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc--ceecc----------
Confidence 577778999999998643311110 112334433210 01 01112222211 22331
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCc---ceeEecCCC-----CCeeEEEEcCCC-CEEEEEeCCCeEEE
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQ-----GEVNCVKWDPTG-SLLASCSDDVTAKI 351 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~---~~~~~~~h~-----~~v~~v~~~~~~-~~l~s~~~dg~i~i 351 (490)
..|...+.++.+..+..+..+.+|-.|-+|.+...- .+..+..|. ..|++..|+|.. ..+.-.+..|.|++
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 224445667777777778888888888888875432 233344453 347889999965 56677788899999
Q ss_pred EecCCCcee------e----------eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEe
Q 011224 352 WNMKQDKYV------H----------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSL 414 (490)
Q Consensus 352 wd~~~~~~~------~----------~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~ 414 (490)
-|++...+. . -+......|..+.|++.|+ ++++-+. -+|+|||++.. .++.++
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---------yIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---------YILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---------EEEEecc-ceEEEEecccccCCceee
Confidence 999843221 0 1122335678889999986 6666554 58999999854 456666
Q ss_pred eCCC------------CCE---EEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 415 NGHR------------EPV---YSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 415 ~~h~------------~~v---~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.-|. ..| ..+.||-|.+.+.+||..+..-+|-
T Consensus 319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred chHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 4332 234 3478888888888887766555554
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=1.2e-08 Score=63.44 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=36.8
Q ss_pred CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 408 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 408 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
++++.++.+|..+|++|+|+|++.+|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 299
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.82 E-value=7.9e-08 Score=93.96 Aligned_cols=277 Identities=18% Similarity=0.333 Sum_probs=179.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCC--CEEEEEecCCC--CEEEEEeCCCeEEEEEccCc--
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKG--PIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTE-- 274 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~--~V~~l~~~~~~--~~l~s~s~D~~v~iwd~~~~-- 274 (490)
+++..+..+|.|+-++.++.-|.. +-|+... .....-.|.. .|-.+.|+|.. .+-++......-.+|++...
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 457778889999988888876644 4444321 1111222332 24556777654 33333344455678887432
Q ss_pred -ceeEeeeeeccCeEEEEccC--CceEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 011224 275 -EWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350 (490)
Q Consensus 275 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 350 (490)
...-.+.+|...+.++.|.. ...+++++.|..+..|+++.. .++..+..-......|+|+.....+...+..+.|+
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 22234456778889998864 456789999999999999864 46666555555677899998766666677778899
Q ss_pred EEecCCC-ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE--EEeeCCCCCEEEEEEC
Q 011224 351 IWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFS 427 (490)
Q Consensus 351 iwd~~~~-~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~s 427 (490)
+||++.+ .++..+++|...++.+.|..... ..+.+++.||+|++||......- +.+ ....+|+.-.|-
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~ 254 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------SEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYL 254 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhh--------hhhcccCCCCceeeecccccccccceec-cccCcceecccc
Confidence 9999876 45778888888888887764322 14778999999999998754321 222 234567777777
Q ss_pred CCCCEEEE----Ee-------CCCcEEEEEcCCC-eEEEEEecCCC-EEEEEECCCCC----------EEEEEECCCcEE
Q 011224 428 PTGEYLAS----GS-------LDKSMHIWSLKEG-KIVKTYTGNGG-IFEVCWNKEGD----------KIAACFANHTVC 484 (490)
Q Consensus 428 pdg~~l~s----~s-------~dg~i~iw~~~~~-~~~~~~~~~~~-v~~~~~~~~g~----------~la~~~~d~~v~ 484 (490)
|-|.-..+ |+ -+.....|++.++ +.+++|.||.. |..+.|...+. .|++=+.|.+++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 75532221 11 1223334554443 45788888764 66777766432 789999999999
Q ss_pred EEEe
Q 011224 485 VLDF 488 (490)
Q Consensus 485 v~~~ 488 (490)
+|-+
T Consensus 335 lWpI 338 (1081)
T KOG0309|consen 335 LWPI 338 (1081)
T ss_pred eeec
Confidence 9965
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=2.5e-08 Score=89.12 Aligned_cols=158 Identities=15% Similarity=0.228 Sum_probs=107.3
Q ss_pred cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC----ceeeeeccccccEEEEEEcC
Q 011224 302 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD----KYVHDLREHSKEIYTIRWSP 377 (490)
Q Consensus 302 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~v~~~p 377 (490)
+.+..+.+.++.++.. +.| ...+.|.++.|...++++..|...|.|..+|++.+ ........|...|+++..-.
T Consensus 231 G~sqqv~L~nvetg~~-qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq 308 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGHQ-QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQ 308 (425)
T ss_pred cccceeEEEEeecccc-ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhc
Confidence 3334444555444321 122 24567889999998999999999999999999865 11122224666666654322
Q ss_pred CCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE---EEEeeCCCCCEEEE--EECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 378 TGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSL--AFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 378 ~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l--~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
. .++ +|++.+.+|+|++||++.-++ +.+..||...-.-+ -..+....++++|.|...+||.++.|.+
T Consensus 309 ~-------s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 309 F-------SQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred c-------ccc-eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 1 112 567778999999999997776 88888885432222 2345667889999999999999999999
Q ss_pred EEEEecCC-----CEEEEEECC
Q 011224 453 VKTYTGNG-----GIFEVCWNK 469 (490)
Q Consensus 453 ~~~~~~~~-----~v~~~~~~~ 469 (490)
+.+++... .+.+++|..
T Consensus 381 l~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 381 LCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeccCCCCccccccccceehhc
Confidence 98876432 345566544
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.78 E-value=3.4e-06 Score=74.30 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=109.0
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC------CCEEEE
Q 011224 145 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE------GTLLAT 218 (490)
Q Consensus 145 V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~------~~~l~s 218 (490)
=+-++||||+.+||.+...|+|+++|+..... ..+.........-..+|..|.|-.- ...|+.
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-----------f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-----------FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccccee-----------EEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 36789999999999999999999999864221 1111111111122455666666432 124556
Q ss_pred EeCCCeEEEEECC-----C-ceeEE--ec-CCCCCEEEEEecCCCCEEEEEeCCCe-----------EEEEEccCcceeE
Q 011224 219 GSYDGQARIWSTN-----G-DLKCT--LS-KHKGPIFSLKWNKKGDYLLTGSCDKT-----------AIVWDVKTEEWKQ 278 (490)
Q Consensus 219 g~~dg~i~iw~~~-----~-~~~~~--~~-~h~~~V~~l~~~~~~~~l~s~s~D~~-----------v~iwd~~~~~~~~ 278 (490)
-.+.|.++=|-+. + ..... +. .+...|.++.|+|..+.|+.|+.... +..|-+-.+.
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~--- 191 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS--- 191 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC---
Confidence 6777777766531 1 12222 22 34778999999999888877765322 2222221111
Q ss_pred eeeeeccCeEEEEccCCceEEEEcCCCe------EEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 279 QFEFHSGPTLDVDWRNNVSFATSSTDNM------IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~------i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iw 352 (490)
+....++...+.. ..++.+-..+...........|..+..||||++||+.+.+|.|.+|
T Consensus 192 ---------------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 192 ---------------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred ---------------CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 1111112222211 1112211111000011234578899999999999999999999999
Q ss_pred ecCCCceeeeec
Q 011224 353 NMKQDKYVHDLR 364 (490)
Q Consensus 353 d~~~~~~~~~~~ 364 (490)
++.+-++.....
T Consensus 257 ~iPsL~~~~~W~ 268 (282)
T PF15492_consen 257 EIPSLRLQRSWK 268 (282)
T ss_pred ecCcchhhcccc
Confidence 998766655544
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=3.3e-06 Score=73.23 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=143.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCc--eeEEecCCCCCEEEEEec-CCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 212 EGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
..-+|+.||..|...+|..... .......|...|+-+.=. ...-.+..++.|.++++.++..+..........-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4468999999999999987643 223334455544332211 1123477889999999998876543332222212255
Q ss_pred EEEccCCceEE-EEcCCCeEEEEEcCCCc--ceeEe-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee--
Q 011224 289 DVDWRNNVSFA-TSSTDNMIYVCKIGENR--PIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-- 362 (490)
Q Consensus 289 ~~~~~~~~~~~-~~~~d~~i~~~~~~~~~--~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-- 362 (490)
...+.++..+. +.++...|+.+.+.... .+.++ ...+..-.+..|+.....+|++..||++.|||++.......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 56666666554 44566778888776532 22222 22334456788999999999999999999999987543321
Q ss_pred ---eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC-------CC-CCEEEEEECCCCC
Q 011224 363 ---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-------HR-EPVYSLAFSPTGE 431 (490)
Q Consensus 363 ---~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-------h~-~~v~~l~~spdg~ 431 (490)
-..|.+.+..+.|++-|.. . +|+-.-.-+.+.+-|+++++....+.. |. ..|..-.|+.++.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~l------D-LLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLL------D-LLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cccCCCCCCceEEEEecCCCcc------e-EEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 1247789999999986642 2 344444567899999998876544321 22 2367777877776
Q ss_pred EEEEEeCCCcEEEEEcC
Q 011224 432 YLASGSLDKSMHIWSLK 448 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~ 448 (490)
-+.+.+.+ .+.-|++.
T Consensus 316 s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 316 SNDVKNEL-QGAEYNIL 331 (344)
T ss_pred ccccccch-hhheeecc
Confidence 65555544 24445544
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=1e-05 Score=73.44 Aligned_cols=211 Identities=16% Similarity=0.157 Sum_probs=133.3
Q ss_pred CCeEEEEEccCcceeEeeeeec--cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEE
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 340 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 340 (490)
+++|..||+++++.+-...... ..........+..+++++.++.++.++..+++.+..+.. .+.+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 6889999999988776665421 222211232445556667899999999988887766654 22221111 2235566
Q ss_pred EEEeCCCeEEEEecCCCceeeee-cccc---ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC
Q 011224 341 ASCSDDVTAKIWNMKQDKYVHDL-REHS---KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 416 (490)
Q Consensus 341 ~s~~~dg~i~iwd~~~~~~~~~~-~~~~---~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 416 (490)
+.++.++.+..+|..+++.+... .... ...........+. .++.+..++.|..+|..+|+.++....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD---------RLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT---------EEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecC---------EEEEEeccCcEEEEecCCCcEEEEeec
Confidence 67778889999999999887663 2211 0011111111121 466777799999999999999988876
Q ss_pred CCCC----------E-EEEEECCCCCEEEEEeCCCc-EEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEE
Q 011224 417 HREP----------V-YSLAFSPTGEYLASGSLDKS-MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 484 (490)
Q Consensus 417 h~~~----------v-~~l~~spdg~~l~s~s~dg~-i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~ 484 (490)
.... + ..+.+. ++ .+..++.++. +.+ |+.+|+.+.... ...+.. ...+++..|+.+..++.|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~ 225 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLY 225 (238)
T ss_dssp STT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEE
T ss_pred CCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEE
Confidence 4422 1 233333 44 6777777775 555 999999765333 333333 2457778888887999999
Q ss_pred EEEee
Q 011224 485 VLDFR 489 (490)
Q Consensus 485 v~~~~ 489 (490)
.||++
T Consensus 226 ~~d~~ 230 (238)
T PF13360_consen 226 ALDLK 230 (238)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99975
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=6.5e-08 Score=86.50 Aligned_cols=156 Identities=13% Similarity=0.256 Sum_probs=121.7
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc----ceeEeee
Q 011224 208 DWNG--EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFE 281 (490)
Q Consensus 208 ~~s~--~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~ 281 (490)
+|+- .|-. ++.+.+-.|-+-+.++.....|. .++.|.++.|+..++.++.|...|.|..+|++.+ .+..+..
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 5653 2333 56667778888888877666665 6788999999999999999999999999999876 4555556
Q ss_pred eeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcc---eeEecCCCCCe--eEEEEcCCCCEEEEEeCCCeEEEEec
Q 011224 282 FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEV--NCVKWDPTGSLLASCSDDVTAKIWNM 354 (490)
Q Consensus 282 ~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~h~~~v--~~v~~~~~~~~l~s~~~dg~i~iwd~ 354 (490)
.|...+.++... ....+++++.+|.|.+||++--+. +..+.||.+.- .-+-.++....|++++.|-..|||.+
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 677777776543 456778889999999999987666 88999996533 23445667788999999999999999
Q ss_pred CCCceeeeecc
Q 011224 355 KQDKYVHDLRE 365 (490)
Q Consensus 355 ~~~~~~~~~~~ 365 (490)
+.+.++.++..
T Consensus 376 ~~ghLl~tipf 386 (425)
T KOG2695|consen 376 DSGHLLCTIPF 386 (425)
T ss_pred ccCceeeccCC
Confidence 99988777654
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=4.1e-07 Score=91.22 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=136.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEE
Q 011224 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK 332 (490)
Q Consensus 253 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~ 332 (490)
++..++-|+....+..+|+++.+..+......+.+.-+. .++..+..+...|+|.+-|....+++.++..|++.|..++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 345678888888888999999887777666554443333 3556677888999999999999999999999999997765
Q ss_pred EcCCCCEEEEEeCC---------CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEE
Q 011224 333 WDPTGSLLASCSDD---------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403 (490)
Q Consensus 333 ~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 403 (490)
. .|++|++||.. .-|+|||++..+.+.-+..+.++ .-+.|.|.-. ..++.+|..|...+-
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~--------t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT--------TRLAVTSQSGQFQFV 293 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc--------ceEEEEecccceeec
Confidence 5 68999999864 45789999887766555544433 3455666543 257888888999998
Q ss_pred e---CCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 404 D---VELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 404 d---~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
| +.+. ..++.+......|..+.+|++|+.||.|..+|.|.+|.-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 8 3332 123334444455999999999999999999999999973
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=9.1e-07 Score=76.33 Aligned_cols=164 Identities=15% Similarity=0.188 Sum_probs=97.5
Q ss_pred EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc-eeEeeeeeccCeEEEEccCCceEEEEcC------CCeEE
Q 011224 236 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSST------DNMIY 308 (490)
Q Consensus 236 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~i~ 308 (490)
..+..|+.+-..-..+--++.+++++.||.+.+.+.+.-. .............+...-....++.+.. -+..+
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFY 162 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecccee
Confidence 3444555543333334456789999999999999876411 0111110000001111111122232222 22344
Q ss_pred EEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCce-eeeeccccccEEEEEEcCCCCCCCCCC
Q 011224 309 VCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPN 386 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~v~~~p~g~~~~~~~ 386 (490)
.|+++..+....-.-....|.+++-+|.. +++++|+.||.+-+||++.... +..+..|..++..+.|+|....
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~----- 237 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPE----- 237 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCch-----
Confidence 55554332221111112348999999975 4567888999999999987744 4556789999999999997542
Q ss_pred CcEEEEEEECCCcEEEEeCCC
Q 011224 387 QQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 387 ~~~~l~sgs~dg~i~iwd~~~ 407 (490)
-|++++.||.+--||..+
T Consensus 238 ---~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 ---HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ---heeEecCCCcEEEEcCCC
Confidence 478999999999999763
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=8e-07 Score=87.65 Aligned_cols=159 Identities=19% Similarity=0.336 Sum_probs=123.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCC--CCC-CCcEEEEEEECCCcEEEE
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT--NNP-NQQLILASASFDSTVKLW 403 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~--~~~-~~~~~l~sgs~dg~i~iw 403 (490)
--.+++|+|.| +||-|+. ..|.+-|..+-+.++.+..|...|+.++|.|....- ..| ..+++||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678999876 6666665 468888999999999999999999999999875432 222 256789999999999999
Q ss_pred eCCCCeEEEEeeCCCCCEEEEEECC---CC-CEEEEEeCCCcEEEEEcCCCeEEEEEecCCC-EEEEEECC-CCCEEEEE
Q 011224 404 DVELGKLLYSLNGHREPVYSLAFSP---TG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNK-EGDKIAAC 477 (490)
Q Consensus 404 d~~~~~~~~~~~~h~~~v~~l~~sp---dg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~-v~~~~~~~-~g~~la~~ 477 (490)
|...+..+..+..|..+|.+++|-| +. .+|++-....+|.+|+..+|+....+.-... ..++.+.| |.+++..-
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 9999988888998999999999865 33 4666667778999999999998877754333 55688888 45666665
Q ss_pred ECCCcEEEEE
Q 011224 478 FANHTVCVLD 487 (490)
Q Consensus 478 ~~d~~v~v~~ 487 (490)
+..|.|.+-+
T Consensus 175 ~s~g~vl~~~ 184 (1062)
T KOG1912|consen 175 GSKGFVLSCK 184 (1062)
T ss_pred ccCceEEEEe
Confidence 5556555443
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=0.00021 Score=65.10 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=141.2
Q ss_pred eeEEEECCC-CCEEEEEECCC-cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC-
Q 011224 145 VCACAWSPA-GSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY- 221 (490)
Q Consensus 145 V~~~~~sp~-~~~l~sgs~D~-~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~- 221 (490)
.++++.+|. ...++.+---| .+.+||..++......... .-+++.+| -.||+||++|++.-.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~-----~gRHFyGH----------g~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP-----PGRHFYGH----------GVFSPDGRLLYTTEND 71 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC-----CCCEEecC----------EEEcCCCCEEEEeccc
Confidence 346788884 55666676555 4778898776532211100 01222222 479999999998744
Q ss_pred ----CCeEEEEECCC--ceeEEecCCCCCEEEEEecCCCCEEEEEeCC-------CeEEEEEccCcceeEeeeeeccCeE
Q 011224 222 ----DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-------KTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 222 ----dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
.|.|-|||... ..+..+..|.-.-..+.+.|++..|+.+-.- |..++ |+.+++
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~------------- 137 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQ------------- 137 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcC-------------
Confidence 48999999873 3445677777666888999999888776321 11111 122211
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeE--e--cCCCCCeeEEEEcCCCCEEEEEeCCCe-------EEEEecCCC
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKT--F--AGHQGEVNCVKWDPTGSLLASCSDDVT-------AKIWNMKQD 357 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~--~--~~h~~~v~~v~~~~~~~~l~s~~~dg~-------i~iwd~~~~ 357 (490)
-.+...+..++..+.. + .-|...|.-+++.++|..++.+-..|- +-+++. +
T Consensus 138 ----------------psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g 199 (305)
T PF07433_consen 138 ----------------PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--G 199 (305)
T ss_pred ----------------CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--C
Confidence 1122222233333222 2 235667888888888876666554442 223322 2
Q ss_pred ceeeee-------ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC
Q 011224 358 KYVHDL-------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 430 (490)
Q Consensus 358 ~~~~~~-------~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg 430 (490)
..+..+ ......+-+|++++++. .+.+|+-.-|.+.+||..+++.+....- ..+..|+-.+++
T Consensus 200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~--------~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 200 GALRLLPAPEEQWRRLNGYIGSIAADRDGR--------LIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred CcceeccCChHHHHhhCCceEEEEEeCCCC--------EEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence 222212 12346688999998875 3567777888999999999998866542 236777777776
Q ss_pred CEEEEEeC
Q 011224 431 EYLASGSL 438 (490)
Q Consensus 431 ~~l~s~s~ 438 (490)
|++|.+.
T Consensus 270 -f~~ssG~ 276 (305)
T PF07433_consen 270 -FLVSSGQ 276 (305)
T ss_pred -eEEeCCC
Confidence 6666553
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.1e-05 Score=80.45 Aligned_cols=180 Identities=19% Similarity=0.271 Sum_probs=121.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
++|++++ +++|+-|..+|.|++.+.++.. .+...|... ...|.+++|||.||+|.|-.+-+.+...++.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df- 111 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF- 111 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec-
Confidence 4455554 5789999999999999987765 333345443 56789999999999999887655443222211
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-----CCEEEEEeCCCeEEEEecC---
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----GSLLASCSDDVTAKIWNMK--- 355 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~~~dg~i~iwd~~--- 355 (490)
..++.+++++|+ .+.+++|+.-| +.++.-+
T Consensus 112 -----------------------------------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlg 149 (846)
T KOG2066|consen 112 -----------------------------------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLG 149 (846)
T ss_pred -----------------------------------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhc
Confidence 235778888887 46789999988 6665421
Q ss_pred CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCC------EEEEEECCC
Q 011224 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP------VYSLAFSPT 429 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~------v~~l~~spd 429 (490)
....+ .+....++|+++.|.-+ ++|=++.+| |++||+.+++.+..+..-... -..+.|.++
T Consensus 150 nk~~v-~l~~~eG~I~~i~W~g~-----------lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~ 216 (846)
T KOG2066|consen 150 NKDSV-VLSEGEGPIHSIKWRGN-----------LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE 216 (846)
T ss_pred Cccce-eeecCccceEEEEecCc-----------EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC
Confidence 11112 34556789999999643 677676665 999999988877666433222 245788777
Q ss_pred CCEEEEEeCCCcEEEEEcCCC
Q 011224 430 GEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 430 g~~l~s~s~dg~i~iw~~~~~ 450 (490)
.+++ .| +.-+|+|..++++
T Consensus 217 ~~LV-IG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 217 DRLV-IG-WGDSVKICSIKKR 235 (846)
T ss_pred CeEE-Ee-cCCeEEEEEEecc
Confidence 5544 33 4457999988743
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.1e-05 Score=80.40 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=119.8
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 374 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 374 (490)
...|+.++-+|.+++.+..... .+...|... .-+|.+++|||.||+|.|-.+.+.+..+++. ...++.+|+
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia 119 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA 119 (846)
T ss_pred cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence 3456777778888887765443 222233332 5579999999999999999988877665443 346889999
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC--CCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
++|+-... +...+++|+.-| +.++.-+ ..+.-..+..-.++|.++.|. |.+||-++.+| |+|||+.+++.
T Consensus 120 l~Pd~~~~----~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 120 LHPDFSRQ----QSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred eccchhhh----hhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce
Confidence 99982211 112578898888 7776422 111111345556899999995 67999999888 99999999888
Q ss_pred EEEEecCC-------CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 453 VKTYTGNG-------GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 453 ~~~~~~~~-------~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+..++... -...+.|.++. .|+.|-.| +|.|.-+|
T Consensus 192 l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 192 LTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred eeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 77664421 13578898875 55566554 67777665
No 311
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=2.4e-05 Score=76.95 Aligned_cols=149 Identities=15% Similarity=0.242 Sum_probs=103.5
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
|...|.--+++..+++++-|+.-|.+.+|+-..+..... . ..+....+..+..|++..++|.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~------------~----~~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL------------K----NEGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc------------c----ccCccceEEEEEecchhHhhhhhc
Confidence 455566667778899999999999999998665432110 0 011234566677899999999999
Q ss_pred CCCeEEEEECCCc----eeEE---ecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc----eeEeeeeeccCeEE
Q 011224 221 YDGQARIWSTNGD----LKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLD 289 (490)
Q Consensus 221 ~dg~i~iw~~~~~----~~~~---~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~----~~~~~~~~~~~~~~ 289 (490)
..|.|.++..+.. .... -..|+..|++++|++++..+++|...|+|.+--+.+.. ..+.+..-.++|..
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence 9999999976532 1111 12478899999999999999999999999988877621 12233333456777
Q ss_pred EEccCCceEEEEcCCC
Q 011224 290 VDWRNNVSFATSSTDN 305 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~ 305 (490)
+++.....+++...-.
T Consensus 176 lD~~q~~LLVStl~r~ 191 (726)
T KOG3621|consen 176 LDYLQSYLLVSTLTRC 191 (726)
T ss_pred eecccceehHhhhhhh
Confidence 7776666655554433
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=0.00012 Score=76.62 Aligned_cols=197 Identities=14% Similarity=0.256 Sum_probs=123.8
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
+.|.++.|..++.-++.+..+|.|.+-|..+... ... + .....|.+++||||+..++..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------eiv----g---~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-----------EIV----G---NVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-----------eee----e---eccCceEEEeecCCCcEEEEEeCC
Confidence 6799999999999888899999999887665421 111 1 124579999999999999999988
Q ss_pred CeEEEEECC------------------------CceeEEecCCCC---------------------CEEEEEecCCCCEE
Q 011224 223 GQARIWSTN------------------------GDLKCTLSKHKG---------------------PIFSLKWNKKGDYL 257 (490)
Q Consensus 223 g~i~iw~~~------------------------~~~~~~~~~h~~---------------------~V~~l~~~~~~~~l 257 (490)
+++.+-... +.....|.+..+ .=+++.|.-+|.+|
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence 888765321 001112222111 11358999999998
Q ss_pred EE-----EeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEE----cCCCeEEEEEcCC---CcceeEecCCC
Q 011224 258 LT-----GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS----STDNMIYVCKIGE---NRPIKTFAGHQ 325 (490)
Q Consensus 258 ~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~i~~~~~~~---~~~~~~~~~h~ 325 (490)
++ ...-+.|++||-+ +.+...-....+.-.++.|.+...++++ +.++.|.++.... +.-...+....
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 87 2333899999976 4433322222333456777665443332 2445566655322 11111222234
Q ss_pred CCeeEEEEcCCCCEEEE---EeCCCeEEEEecCCCc
Q 011224 326 GEVNCVKWDPTGSLLAS---CSDDVTAKIWNMKQDK 358 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s---~~~dg~i~iwd~~~~~ 358 (490)
.++..++|+.++.+||. +.....|++|-+.+..
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 45899999999999887 5555569999876543
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.4e-05 Score=70.90 Aligned_cols=246 Identities=14% Similarity=0.142 Sum_probs=131.8
Q ss_pred cCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCcee-EEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcc
Q 011224 199 EKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~ 275 (490)
.+...|..++|||..+ ++..++.+..|+|.|++.... ..+..| .++++++|.-+. ++++.|-..|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 4567799999999877 788999999999999887544 344555 889999998765 689999999999999997543
Q ss_pred -eeEeee--eeccCeEEEEccC-------CceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcCCCCEE-EEE
Q 011224 276 -WKQQFE--FHSGPTLDVDWRN-------NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLL-ASC 343 (490)
Q Consensus 276 -~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l-~s~ 343 (490)
....+. ....|+..+.... ...++.+..+-..+-.......+..++. +..+...++++++-.+.+ +|-
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEe
Confidence 111111 1223444444321 1222222222211111111111111111 123344455555544443 333
Q ss_pred eCCCe---EE---E-EecCCCceeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee
Q 011224 344 SDDVT---AK---I-WNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 415 (490)
Q Consensus 344 ~~dg~---i~---i-wd~~~~~~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 415 (490)
-.+.+ ++ . -|...+.++...+ .+.+. .....+....-...+....++..|...+.+.+||..+.+.++++.
T Consensus 350 Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs-~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~ 428 (463)
T KOG1645|consen 350 RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGS-KQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA 428 (463)
T ss_pred cCCCCCccceeeeeeeccccCceeeeecccccCC-cccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc
Confidence 22110 11 0 0111222221111 11000 000000000000112224567778888899999999999998886
Q ss_pred CCCCCEEEEEECCC--CCEEEEEeCCCcEEEEEcC
Q 011224 416 GHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 416 ~h~~~v~~l~~spd--g~~l~s~s~dg~i~iw~~~ 448 (490)
...+|.+++...- +.||++-. |..++||..+
T Consensus 429 -~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 429 -LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred -cCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 4588888876542 45777665 4568887653
No 314
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.46 E-value=5.8e-05 Score=75.07 Aligned_cols=172 Identities=10% Similarity=0.139 Sum_probs=104.1
Q ss_pred CeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCC
Q 011224 305 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNN 384 (490)
Q Consensus 305 ~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~ 384 (490)
+.+.+.|..+.....++.- .+....++++|+|+++++.+.+. ..+..+..+...... ..+.|++.+.....
T Consensus 215 ~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni~~iea~v 285 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNIARIEEAV 285 (635)
T ss_pred EEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEchHHHHHhh
Confidence 4455556555444333321 12335678899999987776322 112122222111111 33444433211111
Q ss_pred CCCcEEEEEEECCCcEEEEeCCC-----CeEEEEeeCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEcCCCe-------
Q 011224 385 PNQQLILASASFDSTVKLWDVEL-----GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------- 451 (490)
Q Consensus 385 ~~~~~~l~sgs~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~~~------- 451 (490)
++.+..++ .++.|.+.|..+ ...+..+. -......+++||||+++++++ .+.+|.|.|+.+.+
T Consensus 286 kdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 KAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hCCCEEEE---CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 22222333 257899999988 34555554 334568899999999887654 58999999998754
Q ss_pred -----EEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 452 -----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 452 -----~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++....-.-+....+|.++|+...+.+.|..|..||+.
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 24444434456789999999988899999999999963
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=6e-06 Score=83.20 Aligned_cols=178 Identities=18% Similarity=0.190 Sum_probs=128.5
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
..++.++-...+..+|+.+.+..+...-..+.|.-+. .+++++.+|...|+|.+-|.++.+.++++.+|.+.+..+..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 3455566666677777777665555443343444444 46899999999999999999999999999999998877654
Q ss_pred cCCCCCCCCCCCcEEEEEEEC---------CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEE
Q 011224 376 SPTGSGTNNPNQQLILASASF---------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIW 445 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~---------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw 445 (490)
.|. +|++++. |..|++||++.-+.+..+.-+.++ .=+.|+|.- ..+|.+|..|...+-
T Consensus 226 --~GN---------lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 226 --QGN---------LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred --cCC---------eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeec
Confidence 332 5677765 556899999987776555544444 446788863 567888889999998
Q ss_pred EcC---CCe-EEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 446 SLK---EGK-IVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 446 ~~~---~~~-~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
|.. +-. -+......+ .+.++++++.|+.||.|-.+|.|.+|-
T Consensus 294 d~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 832 221 122222333 489999999999999999999999993
No 316
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.45 E-value=0.00024 Score=69.70 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=144.6
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-C
Q 011224 154 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-G 232 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~ 232 (490)
+..++.++.++.+.-+|..+|+......... ...+.++. .+..++.+..++.+..+|.. +
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-------------~~~ssP~v------~~~~v~v~~~~g~l~ald~~tG 180 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-------------EALSRPVV------SDGLVLVHTSNGMLQALNESDG 180 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-------------ceecCCEE------ECCEEEEECCCCEEEEEEccCC
Confidence 4566778889999999998887544322110 00111211 13456667778888888875 4
Q ss_pred ceeEEecCCCCCEEEE--EecC--CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC-------eEEEEc---cCCceE
Q 011224 233 DLKCTLSKHKGPIFSL--KWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-------TLDVDW---RNNVSF 298 (490)
Q Consensus 233 ~~~~~~~~h~~~V~~l--~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~ 298 (490)
+....+.... +...+ .-+| .+..++.++.++.+..+|+.+++..-.+...... ...+.. ..+..+
T Consensus 181 ~~~W~~~~~~-~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 181 AVKWTVNLDV-PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred CEeeeecCCC-CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 4444433211 10000 0011 1245777888999999999888754433211100 000000 012334
Q ss_pred EEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc-EEEEEEcC
Q 011224 299 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSP 377 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~p 377 (490)
..++.++.++.++..+++.+-... .+....+.. .+..|+.++.+|.+..+|..+++.+-........ ..+....
T Consensus 260 y~~~~~g~l~ald~~tG~~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~- 334 (394)
T PRK11138 260 YALAYNGNLVALDLRSGQIVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY- 334 (394)
T ss_pred EEEEcCCeEEEEECCCCCEEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-
Confidence 445567888888888776553322 111111222 4566777888999999999888765432211111 1111110
Q ss_pred CCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEE-EEECCCCCEEEEEeCCCcEEEEEc
Q 011224 378 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 378 ~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
++ .|+.++.+|.|.+.|..+|+.+....-....+.+ ..+ .+..|+.++.||.|..+++
T Consensus 335 ~g----------~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NG----------YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CC----------EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11 5677899999999999999998877543333322 222 2447888899999888764
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.45 E-value=0.00089 Score=61.02 Aligned_cols=205 Identities=12% Similarity=0.145 Sum_probs=130.7
Q ss_pred EEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc-CCCCEEEEEeCCCe
Q 011224 147 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-GEGTLLATGSYDGQ 224 (490)
Q Consensus 147 ~~~~sp-~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-~~~~~l~sg~~dg~ 224 (490)
+.+|.+ ++.++++--..+.|..|+..++... . .. ......+++. +++. |+.+...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-----------~---~~------~~~~~G~~~~~~~g~-l~v~~~~~- 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-----------V---ID------LPGPNGMAFDRPDGR-LYVADSGG- 61 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----------E---EE------SSSEEEEEEECTTSE-EEEEETTC-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-----------E---Ee------cCCCceEEEEccCCE-EEEEEcCc-
Confidence 578888 6777778778899999998765310 0 00 1115666777 5655 45555544
Q ss_pred EEEEECCCceeEEecC------CCCCEEEEEecCCCCEEEEEeCC--------CeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 225 ARIWSTNGDLKCTLSK------HKGPIFSLKWNKKGDYLLTGSCD--------KTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 225 i~iw~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
+.++|........+.. .......+++.|+|+..++.... +.|..++.. ++.... .........+
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi 139 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGI 139 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccce
Confidence 4555866543332211 23456889999999977766543 557777776 443332 2334445667
Q ss_pred EccCC--ceEEEEcCCCeEEEEEcCCCcc----eeE---ecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee
Q 011224 291 DWRNN--VSFATSSTDNMIYVCKIGENRP----IKT---FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 361 (490)
Q Consensus 291 ~~~~~--~~~~~~~~d~~i~~~~~~~~~~----~~~---~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 361 (490)
.|.++ ..+++-+..+.|+.+++..... ... +..-.+....+++..+|++.++....+.|.+++.. ++.+.
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 77544 3556778889999998864322 122 22223457899999999999888889999999987 88877
Q ss_pred eeccccccEEEEEEc
Q 011224 362 DLREHSKEIYTIRWS 376 (490)
Q Consensus 362 ~~~~~~~~i~~v~~~ 376 (490)
.+......+++++|.
T Consensus 219 ~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 219 EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSEEEEEEE
T ss_pred EEcCCCCCEEEEEEE
Confidence 777665688999994
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=1.6e-05 Score=79.54 Aligned_cols=106 Identities=25% Similarity=0.430 Sum_probs=80.8
Q ss_pred EEECCCCCEEEEEE----CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCC
Q 011224 148 CAWSPAGSLLASGS----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 223 (490)
Q Consensus 148 ~~~sp~~~~l~sgs----~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 223 (490)
.+|+|...++|.++ .-|+|-||- .+|.+.. .....-.+++++|+|..-.|++|-.-|
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr------------------~Vt~P~hatSLCWHpe~~vLa~gwe~g 81 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR------------------DVTYPVHATSLCWHPEEFVLAQGWEMG 81 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc------------------ccccceehhhhccChHHHHHhhccccc
Confidence 46888888888776 346777773 2232110 001123467899999999999999999
Q ss_pred eEEEEECCCceeE-EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011224 224 QARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 224 ~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 272 (490)
.+.+|..+..... ....|+.+|..+.|+++|+.++++..-|.|.+|...
T Consensus 82 ~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 82 VSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999998765544 446799999999999999999999999999999654
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.7e-05 Score=71.56 Aligned_cols=241 Identities=12% Similarity=0.148 Sum_probs=139.5
Q ss_pred EecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcC
Q 011224 237 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIG 313 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~ 313 (490)
.+.+|...|..++|+|..+ .+..++.+.+|+|.|+++...+..+..+ .++.+..|. +...+..|-..|.|+++|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5678888999999999887 6788999999999999999998888877 667777774 33455677789999999998
Q ss_pred CCc-ceeEecC--CCCCeeEE------EEcCCCCEEEEEeCCCeEEEEecCC--Cceeeeec-cccccEEEEEEcCCCCC
Q 011224 314 ENR-PIKTFAG--HQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQ--DKYVHDLR-EHSKEIYTIRWSPTGSG 381 (490)
Q Consensus 314 ~~~-~~~~~~~--h~~~v~~v------~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~-~~~~~i~~v~~~p~g~~ 381 (490)
... ++..+.+ ...+|..+ ...+.|.+++..+.+ +..|.+.. +.....+. ...+.+.+..+.+...
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn- 343 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN- 343 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc-
Confidence 653 2222222 12233332 234445566555543 45565432 11111111 1123333444333221
Q ss_pred CCCCCCcEEEEEEECCCc---EE----EEeCCCCeEEEEe-eCCCC-------CEEEEEECCCCCEEE-EEeCCCcEEEE
Q 011224 382 TNNPNQQLILASASFDST---VK----LWDVELGKLLYSL-NGHRE-------PVYSLAFSPTGEYLA-SGSLDKSMHIW 445 (490)
Q Consensus 382 ~~~~~~~~~l~sgs~dg~---i~----iwd~~~~~~~~~~-~~h~~-------~v~~l~~spdg~~l~-s~s~dg~i~iw 445 (490)
.+|+|.-.+-+ ++ --|-.+|..+... .++.+ .-..+.-.++.++|+ .|..-+.+.+|
T Consensus 344 -------h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~ 416 (463)
T KOG1645|consen 344 -------HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQ 416 (463)
T ss_pred -------eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEe
Confidence 12333221100 00 0111223222211 11100 011222245556665 45566899999
Q ss_pred EcCCCeEEEEEecCCCEEEEEE-CCCCCEEEEEECCCcEEEEEe
Q 011224 446 SLKEGKIVKTYTGNGGIFEVCW-NKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 446 ~~~~~~~~~~~~~~~~v~~~~~-~~~g~~la~~~~d~~v~v~~~ 488 (490)
|+.++.+++++.....|.+++- ...|+-+.+...|..++||-.
T Consensus 417 D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 417 DPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred ccchhheeeecccCcceeecceeecCCcchhhheecceEEEEec
Confidence 9999999999998888988874 445554444445567888753
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.39 E-value=0.00062 Score=65.67 Aligned_cols=288 Identities=16% Similarity=0.201 Sum_probs=147.4
Q ss_pred CCCCCEEEEEE---------CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 151 SPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 151 sp~~~~l~sgs---------~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
|||+++++... ..+.+.|||+.++... .+.. ....+....|||+|+.++-..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~--------------~l~~----~~~~~~~~~~sP~g~~~~~v~- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEIT--------------PLTP----PPPKLQDAKWSPDGKYIAFVR- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEE--------------ESS-----EETTBSEEEE-SSSTEEEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceE--------------ECcC----CccccccceeecCCCeeEEEe-
Confidence 67888776632 2356778888765311 1100 034578899999999998875
Q ss_pred CCeEEEEECCCceeEEecCCC------------------CCEEEEEecCCCCEEEEEeCC-CeEEEEEcc---CcceeEe
Q 011224 222 DGQARIWSTNGDLKCTLSKHK------------------GPIFSLKWNKKGDYLLTGSCD-KTAIVWDVK---TEEWKQQ 279 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~------------------~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~---~~~~~~~ 279 (490)
++.|.+++..+.....+.... +.-.++-|+|++++|+....| ..|+.+.+- ...- .
T Consensus 62 ~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--~ 139 (353)
T PF00930_consen 62 DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--Q 139 (353)
T ss_dssp TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE--S
T ss_pred cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc--c
Confidence 578999986544333222111 112467899999998876544 334444321 1100 0
Q ss_pred eeeeccCeEEEEccCCceEEEEcC--CCeEEEEEcCCCcceeE--e---cCCCCCeeEEEEcCCCCEEE--EEeCCC---
Q 011224 280 FEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGENRPIKT--F---AGHQGEVNCVKWDPTGSLLA--SCSDDV--- 347 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~~--~---~~h~~~v~~v~~~~~~~~l~--s~~~dg--- 347 (490)
-..+..+.+.. .|.. .-.++++++.+++.... . ..-...+..+.|.++++.|+ ....+.
T Consensus 140 ----yp~~~~~~YPk-----~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~ 210 (353)
T PF00930_consen 140 ----YPEVESIRYPK-----AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRL 210 (353)
T ss_dssp ----S-EEEEEE--B-----TTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEE
T ss_pred ----CCcccccccCC-----CCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEE
Confidence 00011111110 0001 11356677766654221 1 22345688999999998333 333333
Q ss_pred eEEEEecCCCceeeeeccc-ccc---EEEEEEc-CCCCCCCCCCCcEEEEEEECCCcEEEE--eCCCCeEEEEeeCCCCC
Q 011224 348 TAKIWNMKQDKYVHDLREH-SKE---IYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLW--DVELGKLLYSLNGHREP 420 (490)
Q Consensus 348 ~i~iwd~~~~~~~~~~~~~-~~~---i~~v~~~-p~g~~~~~~~~~~~l~sgs~dg~i~iw--d~~~~~~~~~~~~h~~~ 420 (490)
.+.++|..++.....+... ... .....|. +++. .+|.....+|.-+|+ +...+. ...+....-.
T Consensus 211 ~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~--------~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~ 281 (353)
T PF00930_consen 211 DLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN--------EFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWE 281 (353)
T ss_dssp EEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS--------EEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-
T ss_pred EEEEEECCCCceeEEEEecCCcceeeecccccccCCCC--------EEEEEEEcCCCcEEEEEcccccc-eeccccCcee
Confidence 3566777666543222211 111 1123332 4432 244445588765554 555444 3456655566
Q ss_pred EEE-EEECCCCCEE-EEEeCC--C--cEEEEEcCCCeEEEEEecCCCE-EEEEECCCCCEEEEE
Q 011224 421 VYS-LAFSPTGEYL-ASGSLD--K--SMHIWSLKEGKIVKTYTGNGGI-FEVCWNKEGDKIAAC 477 (490)
Q Consensus 421 v~~-l~~spdg~~l-~s~s~d--g--~i~iw~~~~~~~~~~~~~~~~v-~~~~~~~~g~~la~~ 477 (490)
|+. +.|+++++.| .+|..+ . .|..-++..+..+..++..... ..++|||+|++++..
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 755 6788887755 455543 2 4544555523334444443332 699999999987754
No 321
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.39 E-value=2.1e-06 Score=74.11 Aligned_cols=164 Identities=13% Similarity=0.158 Sum_probs=99.6
Q ss_pred ceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee-eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE
Q 011224 317 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 395 (490)
Q Consensus 317 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs 395 (490)
+...+.-|+++-.+-+.+..++-++++..||.+.+++.+....+. .+........+.++...+. ++.++.
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~---------~i~s~~ 151 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGN---------SILSGG 151 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeeccc---------EEecCC
Confidence 344555566665566666677889999999999999876521111 0000000011111111111 222221
Q ss_pred -----CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEEEE--ecCCCEEEEEE
Q 011224 396 -----FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY--TGNGGIFEVCW 467 (490)
Q Consensus 396 -----~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~--~~~~~v~~~~~ 467 (490)
.-+..+.|+++..+.+..-..-...|++++-+|.- ..+++|+.||.+-+||.+.......+ .++..++.+-|
T Consensus 152 ~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~F 231 (319)
T KOG4714|consen 152 CGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHF 231 (319)
T ss_pred cceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheec
Confidence 12345566665433222211122348999999965 56678899999999999987543322 23456899999
Q ss_pred CCC-CCEEEEEECCCcEEEEEee
Q 011224 468 NKE-GDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 468 ~~~-g~~la~~~~d~~v~v~~~~ 489 (490)
+|. +..|.+|+.||.+.-||..
T Consensus 232 Hpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cCCCchheeEecCCCcEEEEcCC
Confidence 996 6799999999999999863
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00016 Score=72.84 Aligned_cols=212 Identities=11% Similarity=0.093 Sum_probs=133.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCC-EEEEEecCCCCEEEEEeCCC-----eEEEEEccCcceeEeee
Q 011224 208 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 208 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~ 281 (490)
+|++.+..++.|+.+|.|.+.+..-.....+..+... |..+....+.++|++-+.|+ .++||++...+--.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~--- 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN--- 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC---
Confidence 4688899999999999999988665665667777766 55554444446788877765 48999986432000
Q ss_pred eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC--CCce
Q 011224 282 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK--QDKY 359 (490)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~--~~~~ 359 (490)
.| .++ +..+++... +.....++.+++.|.+-+.+|+|-.+|.|.++.-+ ..+-
T Consensus 107 ---sP-~c~--------------~~~ri~~~~-------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 107 ---SP-QCL--------------YEHRIFTIK-------NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred ---Cc-cee--------------eeeeeeccC-------CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 00 000 001111110 11134578899999999999999999999988421 1111
Q ss_pred --eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE-EEEeeCCCCCEEEEEECCCCCEEEEE
Q 011224 360 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 360 --~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spdg~~l~s~ 436 (490)
..-......+|+.+++..++.. .++.+ ....|.+|.+....+ +..+..|..+++|.+|++...-+++|
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s--------~lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKS--------VLFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCce--------eEEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 1111223568999999887752 22222 245799999884442 34477788889999999876634444
Q ss_pred eCCCcEEEEEcCCCeEEEEEe
Q 011224 437 SLDKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 437 s~dg~i~iw~~~~~~~~~~~~ 457 (490)
+. ..|.+|+....+.-.++.
T Consensus 233 ~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 233 GS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cC-ceEEEEcCCCcceeeeec
Confidence 43 459999987655555554
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=3.5e-06 Score=78.25 Aligned_cols=199 Identities=16% Similarity=0.102 Sum_probs=136.5
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCC---cceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEecCCCce
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKY 359 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~iwd~~~~~~ 359 (490)
...+..+.......+.+++.|+.+..|.-..- .-++.+..|.+.|.+++.+.++.++.|.+. |..++++|+..-..
T Consensus 9 rd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dm 88 (558)
T KOG0882|consen 9 RDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDM 88 (558)
T ss_pred cceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccch
Confidence 33344444444456788899999999975431 234456678889999999999999999888 99999999876544
Q ss_pred eeeeccc--cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 360 VHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 360 ~~~~~~~--~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
+.-++.. .+.+. .-.+|... . ..+-++.-.+|.|.++|-.... ..+.-.-|..+|..+.++|-+..+++
T Consensus 89 inmiKL~~lPg~a~-wv~skGd~-~-----s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 89 INMIKLVDLPGFAE-WVTSKGDK-I-----SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred hhhcccccCCCceE-EecCCCCe-e-----eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 4322221 11111 11122111 0 1233444567899999976433 34445568999999999999999999
Q ss_pred EeCCCcEEEEEcCC------CeEEEEE----------ecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 436 GSLDKSMHIWSLKE------GKIVKTY----------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 436 ~s~dg~i~iw~~~~------~~~~~~~----------~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
....|.|.-|.... .++...+ .......++.|+|+|..+++-..|..|++++++
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 88899999999872 2221111 123346799999999999999999999999886
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00036 Score=70.31 Aligned_cols=271 Identities=11% Similarity=0.075 Sum_probs=148.0
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEEecCCCC------CEE--EEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 214 TLLATGSYDGQARIWSTN-GDLKCTLSKHKG------PIF--SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~------~V~--~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
..++.++.++.+...|.. ++....+..... .+. .+... ++..++.++.++.|..+|.++++.+-.+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 456666777888888864 333333322111 110 11111 22678888899999999999998765554322
Q ss_pred cC-----e-EEEEccCCceEEEE--------cCCCeEEEEEcCCCcceeEecCCCC--------------------Ce-e
Q 011224 285 GP-----T-LDVDWRNNVSFATS--------STDNMIYVCKIGENRPIKTFAGHQG--------------------EV-N 329 (490)
Q Consensus 285 ~~-----~-~~~~~~~~~~~~~~--------~~d~~i~~~~~~~~~~~~~~~~h~~--------------------~v-~ 329 (490)
.. + ..........++.+ ..++.++.+|..+++.+-.+..... .+ .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 10 0 00111123333322 2357788888877776655432110 11 1
Q ss_pred EEEEcCCCCEEEEEeCCC------------------eEEEEecCCCceeeeeccccccEE--EEEEcCCCCCC--CCCCC
Q 011224 330 CVKWDPTGSLLASCSDDV------------------TAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGT--NNPNQ 387 (490)
Q Consensus 330 ~v~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~i~--~v~~~p~g~~~--~~~~~ 387 (490)
..++.+.+.+++.++.++ .|.-+|..+++.+-.++....... .....|.-... .....
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 345555566777777665 688889988887765432111111 00000000000 00011
Q ss_pred cEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE-----------------EeCCCcEEEEEcCCC
Q 011224 388 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS-----------------GSLDKSMHIWSLKEG 450 (490)
Q Consensus 388 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s-----------------~s~dg~i~iw~~~~~ 450 (490)
..+++.++.+|.+...|.++|+.++..... ...++.+| +..++. ...+|.|.-.|+.+|
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 135777889999999999999999876421 12234455 222221 124678999999999
Q ss_pred eEEEEEecC---------CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 451 KIVKTYTGN---------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 451 ~~~~~~~~~---------~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.+...... .....-.....+..|.+++.||.|+.+|.+
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence 988766433 111110111245778888889998888763
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.34 E-value=0.0027 Score=64.00 Aligned_cols=295 Identities=14% Similarity=0.155 Sum_probs=158.7
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE--EEEEcCCCCEEEEEeCCCeEEEEECC
Q 011224 154 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT--TLDWNGEGTLLATGSYDGQARIWSTN 231 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~s~~~~~l~sg~~dg~i~iw~~~ 231 (490)
+..++.++.++.|.-.|..+++.......... .......+. .++.. ++..++.++.++.|+.+|..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~-----------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLP-----------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAE 128 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCC-----------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECC
Confidence 45667777889999999888765432211100 000000000 01111 22577778889999999975
Q ss_pred -CceeEEecCCCC--CEEEEEecC--CCCEEEEEe---------CCCeEEEEEccCcceeEeeeeeccCe----------
Q 011224 232 -GDLKCTLSKHKG--PIFSLKWNK--KGDYLLTGS---------CDKTAIVWDVKTEEWKQQFEFHSGPT---------- 287 (490)
Q Consensus 232 -~~~~~~~~~h~~--~V~~l~~~~--~~~~l~s~s---------~D~~v~iwd~~~~~~~~~~~~~~~~~---------- 287 (490)
++....+..... .-..+.-+| .+..++.++ .++.+..+|..+++..-.+.......
T Consensus 129 TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 129 TGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc
Confidence 454444432211 000111111 123454543 36889999999998766554421100
Q ss_pred -------------EEEEccCCceEEEEcCCC------------------eEEEEEcCCCcceeEecC--CCC----CeeE
Q 011224 288 -------------LDVDWRNNVSFATSSTDN------------------MIYVCKIGENRPIKTFAG--HQG----EVNC 330 (490)
Q Consensus 288 -------------~~~~~~~~~~~~~~~~d~------------------~i~~~~~~~~~~~~~~~~--h~~----~v~~ 330 (490)
..++.. ...++.++.++ .++-.|..+++.+-.+.. |.. ....
T Consensus 209 ~~~~~~g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~ 287 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQ 287 (488)
T ss_pred ceecCCCCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCC
Confidence 011111 22333343332 688888888777655431 210 0000
Q ss_pred EEEc----CCCC---EEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEE----------
Q 011224 331 VKWD----PTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS---------- 393 (490)
Q Consensus 331 v~~~----~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~s---------- 393 (490)
..+. -++. .++.++.+|.+...|..+++.+-...... ..+..+| + ..++.+
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~--------~vyv~~~~~~~~~~~~ 355 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-G--------LVYLGAFHIPLGLPPQ 355 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-c--------eEEEccccccccCccc
Confidence 0111 1333 57788899999999999998775543210 0111222 1 111111
Q ss_pred ------EECCCcEEEEeCCCCeEEEEeeCCC--------CCE--EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe
Q 011224 394 ------ASFDSTVKLWDVELGKLLYSLNGHR--------EPV--YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 394 ------gs~dg~i~iwd~~~~~~~~~~~~h~--------~~v--~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~ 457 (490)
...+|.|.-.|+.+|+.+++..... .+. ..++. .+.+|+.++.||.|+.+|..+|+++..+.
T Consensus 356 ~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 356 KKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred ccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 1246788889999999988765321 111 11222 45688888999999999999999998876
Q ss_pred cCCCEEE--EEECCCCCEEE
Q 011224 458 GNGGIFE--VCWNKEGDKIA 475 (490)
Q Consensus 458 ~~~~v~~--~~~~~~g~~la 475 (490)
....+.+ +.+..+|++.+
T Consensus 434 ~~~~~~a~P~~~~~~g~~yv 453 (488)
T cd00216 434 TPSGIQATPMTYEVNGKQYV 453 (488)
T ss_pred CCCCceEcCEEEEeCCEEEE
Confidence 6544432 33455665333
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.29 E-value=0.0023 Score=58.47 Aligned_cols=227 Identities=13% Similarity=0.139 Sum_probs=132.4
Q ss_pred EEEEecCC-CCEEEEEeCCCe-EEEEEccCcceeEeeeeeccCeE--EEEcc-CCceEEEE-----cCCCeEEEEEcC-C
Q 011224 246 FSLKWNKK-GDYLLTGSCDKT-AIVWDVKTEEWKQQFEFHSGPTL--DVDWR-NNVSFATS-----STDNMIYVCKIG-E 314 (490)
Q Consensus 246 ~~l~~~~~-~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~-----~~d~~i~~~~~~-~ 314 (490)
..++.+|. ...++.+-.-|+ ..+||.++++....+....+.-. ...|. +...+.++ ...|.|-|||.. .
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 45677784 445556666655 56889988887665533222111 11232 22333333 345789999998 5
Q ss_pred CcceeEecCCCCCeeEEEEcCCCCEEEEEe------------------CCCeEEEEecCCCceeeeec----cccccEEE
Q 011224 315 NRPIKTFAGHQGEVNCVKWDPTGSLLASCS------------------DDVTAKIWNMKQDKYVHDLR----EHSKEIYT 372 (490)
Q Consensus 315 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~----~~~~~i~~ 372 (490)
-..+..|..|.-.--.+.+.|||+.|+.+- ++-.+.+-|..++..+.... .|...+.-
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 566777776655555678899997666542 12234455667777765532 36667888
Q ss_pred EEEcCCCCCCC-------CCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEE-EEeCCCcEEE
Q 011224 373 IRWSPTGSGTN-------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHI 444 (490)
Q Consensus 373 v~~~p~g~~~~-------~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~-s~s~dg~i~i 444 (490)
+++.++|.... ......+++.-..++.++........ ......-|-+|++++++.+++ |+-.-+.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~----~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQ----WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHH----HHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 88888875100 00011123333333333333222111 112234588999999998775 5557789999
Q ss_pred EEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEE
Q 011224 445 WSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 445 w~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~ 478 (490)
||..+|+++....- ..+..++-.+++ ++++.+
T Consensus 244 ~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 244 WDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EECCCCCEeecccc-CceeeeeecCCc-eEEeCC
Confidence 99999998876543 235666766776 444433
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00024 Score=71.69 Aligned_cols=188 Identities=12% Similarity=0.192 Sum_probs=118.4
Q ss_pred eeccccccceeEEEECCCC-CEEEEEECCC-----cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 136 TILEGHTSEVCACAWSPAG-SLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~-----~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
+-++.|..+|-..-+.-++ .+|++-+.|. .|++|++..-..+.. |..+...+.+....+....++.+++.
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~V 133 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAV 133 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC----cceeeeeeeeccCCCCCCCcceEEEE
Confidence 3456666663333344444 6888888765 499999875432211 33333333333222334678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECC-----CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc-eeEeeeee
Q 011224 210 NGEGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFH 283 (490)
Q Consensus 210 s~~~~~l~sg~~dg~i~iw~~~-----~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~ 283 (490)
|.+-+.++.|-.+|.|..+.-+ +...........+|+++.+..++..++-...-..|.+|.+.... ....+..+
T Consensus 134 s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~ 213 (933)
T KOG2114|consen 134 SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN 213 (933)
T ss_pred EccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC
Confidence 9999999999999999998532 11122233456799999999888773434445689999987554 23445666
Q ss_pred ccCeEEEEccCCce-EEEEcCCCeEEEEEcCCCcceeEec-CCCCCe
Q 011224 284 SGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-GHQGEV 328 (490)
Q Consensus 284 ~~~~~~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v 328 (490)
..+..+..+.+... |+. .....+++|+....++...|. ||...+
T Consensus 214 G~~lnCss~~~~t~qfIc-a~~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFIC-AGSEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred CccceeeecCCCCccEEE-ecCceEEEEcCCCcceeeeecCCCeEEE
Confidence 66777776655444 444 344568888877766666665 555443
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=1.6e-06 Score=86.78 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=116.4
Q ss_pred cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 395 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs 395 (490)
++.++|..|....+|++|+-+.++|+.|+..|.|++|+..+|........|...++-+.-+.+|+ ++|.+++
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs--------~~Ltsss 1163 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGS--------TQLTSSS 1163 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcc--------eeeeecc
Confidence 45567788889999999999999999999999999999999998888889999999998887776 3455554
Q ss_pred CCC-cEEEEeCCC-CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe-cC----CCEEEEEEC
Q 011224 396 FDS-TVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GN----GGIFEVCWN 468 (490)
Q Consensus 396 ~dg-~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~----~~v~~~~~~ 468 (490)
+.. -..+|++.. +...+++.+ -.++.|+...++-+.|..-..+.+||+.++..+.++- +. ..=+...|+
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 444 678898753 344444443 4678898876665666655679999999998776642 21 112456688
Q ss_pred CCCCEEEEEECCCcEEEEEeeC
Q 011224 469 KEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 469 ~~g~~la~~~~d~~v~v~~~~~ 490 (490)
|..+++. .|| -+||+|.
T Consensus 1240 P~D~LIl---ndG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRI 1256 (1516)
T ss_pred CCcceEe---eCc--eeeeecc
Confidence 8877664 233 2677763
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=0.00057 Score=68.22 Aligned_cols=132 Identities=15% Similarity=0.150 Sum_probs=89.3
Q ss_pred cCCCCEEEEEeCCCeEEEEecCC----C-ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC
Q 011224 334 DPTGSLLASCSDDVTAKIWNMKQ----D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG 408 (490)
Q Consensus 334 ~~~~~~l~s~~~dg~i~iwd~~~----~-~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 408 (490)
.++|++... .+++|.+.|..+ + ..+..+ .-......+.++|+|. ++++++..+.+|.|.|+.+.
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGk--------ylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGK--------YFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCC--------EEEEeCCCCCcEEEEEChhh
Confidence 457776655 367899999987 3 333333 3445667888899886 57777888999999999875
Q ss_pred eE------------EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC----------CeEEEEEecCCCEEEEE
Q 011224 409 KL------------LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGGIFEVC 466 (490)
Q Consensus 409 ~~------------~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~----------~~~~~~~~~~~~v~~~~ 466 (490)
+. +.+..--.+| ...+|.++|....|--.|..|..|++.+ ..++..+.-+..+-.+.
T Consensus 354 k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~ 432 (635)
T PRK02888 354 DDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH 432 (635)
T ss_pred hhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence 53 2333222233 4578999999888889999999999876 23444443322222222
Q ss_pred ------ECCCCCEEEEE
Q 011224 467 ------WNKEGDKIAAC 477 (490)
Q Consensus 467 ------~~~~g~~la~~ 477 (490)
-.|||++|++.
T Consensus 433 ~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 433 ASMGETKEADGKWLVSL 449 (635)
T ss_pred ecCCCcCCCCCCEEEEc
Confidence 37899988876
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00089 Score=65.45 Aligned_cols=141 Identities=21% Similarity=0.242 Sum_probs=83.8
Q ss_pred eEEEEcCCCCEEE-EEeCCCeEEE--EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE--E
Q 011224 329 NCVKWDPTGSLLA-SCSDDVTAKI--WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL--W 403 (490)
Q Consensus 329 ~~v~~~~~~~~l~-s~~~dg~i~i--wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i--w 403 (490)
...+|+|||+.|+ +...||...| .|+.++... .+....+.-..-.|+|+|+ .++++.+..|.-.| .
T Consensus 241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~--------~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGS--------KIVFTSDRGGRPQIYLY 311 (425)
T ss_pred CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCC--------EEEEEeCCCCCcceEEE
Confidence 3468999998765 5556776554 566655532 2333333333456777775 46666667776444 4
Q ss_pred eCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC-Cc--EEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEEC
Q 011224 404 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-KS--MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 404 d~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-g~--i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~ 479 (490)
++..+.. ..+......-..-.|||||++|+..+.. |. |.+.++.++.-++.+.........+|.|+|+.+...+.
T Consensus 312 ~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 312 DLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 5554433 3333222222367899999999877643 44 67777766554555544444556678888876665443
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.05 E-value=3.7e-05 Score=74.60 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=61.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.....|.+.+++|+...|+.|+.||+|.+||...+....+ ...-.++.++|||+|..+++|+..|.+.+||.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 3667899999999999999999999999999877643322 33345789999999999999999999999996
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.04 E-value=0.0036 Score=61.50 Aligned_cols=219 Identities=15% Similarity=0.186 Sum_probs=116.2
Q ss_pred CCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe
Q 011224 242 KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 321 (490)
Q Consensus 242 ~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 321 (490)
......+.++|+|++++.+ .||...|+......- . ..+....+.|.....|++-.....|.++.--.+...+.+
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~--k---~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN--K---AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE--E---EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc--c---ccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence 3446789999999988884 578888887332221 1 123334566766777888777788888643222222222
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEE
Q 011224 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 401 (490)
Q Consensus 322 ~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 401 (490)
... ..+..+- + |.+|+..+.+ .|.+||+.+++.+..+... .|..+.|++++. +++-.+ +..+.
T Consensus 106 ~~~-~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~---------~val~t-~~~i~ 168 (443)
T PF04053_consen 106 KLP-FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGE---------LVALVT-KDSIY 168 (443)
T ss_dssp --S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSS---------EEEEE--S-SEE
T ss_pred cCC-cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCC---------EEEEEe-CCeEE
Confidence 211 1233332 2 8888777665 8999999999999887643 389999999986 455554 44788
Q ss_pred EEeCCCC-----------eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCC
Q 011224 402 LWDVELG-----------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 470 (490)
Q Consensus 402 iwd~~~~-----------~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~ 470 (490)
|++.... ..+..+......|.+.+|..+ -+|.|.. . .|+- +..|.......-...++=+...|.
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~ 243 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-HLKY--LVNGETGIIAHLDKPLYLLGYLPK 243 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-EEEE--EETTEEEEEEE-SS--EEEEEETT
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-eEEE--EEcCCcceEEEcCCceEEEEEEcc
Confidence 8765432 011222222456888889776 4444433 3 7776 344543222222445677777887
Q ss_pred CCEEEEEECCCcEEEEEe
Q 011224 471 GDKIAACFANHTVCVLDF 488 (490)
Q Consensus 471 g~~la~~~~d~~v~v~~~ 488 (490)
.+.+...-.++.|..+.+
T Consensus 244 ~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp TTEEEEE-TT--EEEEE-
T ss_pred CCEEEEEECCCCEEEEEE
Confidence 788888888888877754
No 333
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.03 E-value=0.021 Score=57.92 Aligned_cols=76 Identities=17% Similarity=0.389 Sum_probs=50.4
Q ss_pred CcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEE--EEECCCCCEE
Q 011224 398 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE--VCWNKEGDKI 474 (490)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~--~~~~~~g~~l 474 (490)
|.|.-+|+.+++.+++........-+. ..-.+.+++.++.+|.++.+|.++|+.+..+...+.+.+ +.+.-+|++.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 568888999999888765322111111 111445677788899999999999999988765554433 4445677633
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00028 Score=68.96 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=91.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEe---CC-CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc
Q 011224 324 HQGEVNCVKWDPTGSLLASCS---DD-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 399 (490)
Q Consensus 324 h~~~v~~v~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~ 399 (490)
-...+...+|+|+++.++.-+ .. ..+.++++.+++....+. ..+.-...+|+|+|. .++++...||.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~--------~l~f~~~rdg~ 261 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS--------KLAFSSSRDGS 261 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC--------EEEEEECCCCC
Confidence 344567788999998765442 22 358889998876543332 222334557888885 47777778887
Q ss_pred EE--EEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeC-CC--cEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEE
Q 011224 400 VK--LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-DK--SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKI 474 (490)
Q Consensus 400 i~--iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~-dg--~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~l 474 (490)
.. +.|+..+. +..+..-.+.-+.=.|+|||++|+-.+. .| .|.+.+...+.........+.-....|+|||++|
T Consensus 262 ~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 262 PDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred ccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEE
Confidence 54 45666555 3335433333345689999999886554 44 4666666655542222222223377899999999
Q ss_pred EEEECC
Q 011224 475 AACFAN 480 (490)
Q Consensus 475 a~~~~d 480 (490)
+..+..
T Consensus 341 ~~~~~~ 346 (425)
T COG0823 341 VFESSS 346 (425)
T ss_pred EEEecc
Confidence 988753
No 335
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.00 E-value=0.015 Score=54.96 Aligned_cols=271 Identities=15% Similarity=0.193 Sum_probs=123.0
Q ss_pred EEcCCCCEEEEEe-CCC--eEEEEECCCceeEEecCCCCC-EEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 208 DWNGEGTLLATGS-YDG--QARIWSTNGDLKCTLSKHKGP-IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 208 ~~s~~~~~l~sg~-~dg--~i~iw~~~~~~~~~~~~h~~~-V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
+|.++|+.|+.++ .|| ++.+.|+.......+..+.+. ..+..++|+++.++-....++|+-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 5788997666554 455 555557777776666654422 335667788888765555678999999998766655544
Q ss_pred ccCeEEEEcc---CCceEEEE---c-------------------CCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC
Q 011224 284 SGPTLDVDWR---NNVSFATS---S-------------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 338 (490)
Q Consensus 284 ~~~~~~~~~~---~~~~~~~~---~-------------------~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 338 (490)
..-+....|. +...++.. . ....|+..++.++..-..+. -...+.-+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 3322222221 11111111 0 01234444554444322222 234566788898765
Q ss_pred E-EEEEeC---CC-eEEEEecCCC-ceeeeecccc--ccEEEEEEcCCCCCCCCCCCcEEEEEE---ECCCcEEEEeCCC
Q 011224 339 L-LASCSD---DV-TAKIWNMKQD-KYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVEL 407 (490)
Q Consensus 339 ~-l~s~~~---dg-~i~iwd~~~~-~~~~~~~~~~--~~i~~v~~~p~g~~~~~~~~~~~l~sg---s~dg~i~iwd~~~ 407 (490)
. |+-|.+ +. .-|||-+++. .....+..+. ..+.-=-|.|+|.. ++..+. +.+..|.-+|+.+
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~-------i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST-------IWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS--------EEEEEEETTT--EEEEEE-TTT
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE-------EEEEeecCCCCceEEEeeCCCC
Confidence 4 445543 22 2367765432 2222222222 22333358888863 111122 1233566677777
Q ss_pred CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC----------------cEEEEEcCCCeEEEEEecCC---------C-
Q 011224 408 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------------SMHIWSLKEGKIVKTYTGNG---------G- 461 (490)
Q Consensus 408 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg----------------~i~iw~~~~~~~~~~~~~~~---------~- 461 (490)
++...... ..+...+--++||+++|-=|.|. .|.++++..+.......+.. .
T Consensus 274 ~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 274 GERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp --EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred CCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 65432211 12345566689999887644432 56678888776543332211 1
Q ss_pred -EEEEEECCCCCEEEEE-ECCCcEEEEEe
Q 011224 462 -IFEVCWNKEGDKIAAC-FANHTVCVLDF 488 (490)
Q Consensus 462 -v~~~~~~~~g~~la~~-~~d~~v~v~~~ 488 (490)
=..+.|+|||+.++.. ...|...||=+
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 1468999999977754 55777777744
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.98 E-value=0.0084 Score=55.57 Aligned_cols=252 Identities=13% Similarity=0.169 Sum_probs=137.7
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEECCCcee-E--EecC-CCC----CEEEEEecCCCCEEEEE--eCCCe
Q 011224 206 TLDWNGEGTLLATGSY----------DGQARIWSTNGDLK-C--TLSK-HKG----PIFSLKWNKKGDYLLTG--SCDKT 265 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~----------dg~i~iw~~~~~~~-~--~~~~-h~~----~V~~l~~~~~~~~l~s~--s~D~~ 265 (490)
.+..+|+++.++++.. .-.|.+||...-.. . .+.. |.. ....++++.++++++.. +--.+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 4567899998886532 34788999765321 1 2222 111 12345678888887664 44567
Q ss_pred EEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC-CcceeE----ecCCCC-CeeEEEEcCCCCE
Q 011224 266 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKT----FAGHQG-EVNCVKWDPTGSL 339 (490)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~----~~~h~~-~v~~v~~~~~~~~ 339 (490)
|.|-|+..++.+..+.... ...+-...+..|.+-+.||.+....+.. ++.... |..-.. .+..-++...+..
T Consensus 120 VtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 8899999888877654321 1222223456788888999988888773 333221 111112 2233444445555
Q ss_pred EEEEeCCCeEEEEecCCCcee--eeeccccccEEEEEEcCCCCCC---CCCCCcEEE-EEEECCC-------cEEEEeCC
Q 011224 340 LASCSDDVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGT---NNPNQQLIL-ASASFDS-------TVKLWDVE 406 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~v~~~p~g~~~---~~~~~~~~l-~sgs~dg-------~i~iwd~~ 406 (490)
++--+..|.|+--|+...... ..+......-..-.|.|.|-.. +.+.+.+|+ .--+.+| .|-++|+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 555778888888777654321 1111000000001233433211 011222332 2222233 37788999
Q ss_pred CCeEEEEeeCCCCCEEEEEECCCCC-EEEEE-eCCCcEEEEEcCCCeEEEEEecCC
Q 011224 407 LGKLLYSLNGHREPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNG 460 (490)
Q Consensus 407 ~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~ 460 (490)
+++.+.++.. ..++.+|+.+.+.+ +|++. ..++.|.+||..+|++++....-+
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---S
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccC
Confidence 9999988873 34688999998764 66554 458999999999999998886543
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.98 E-value=0.00042 Score=67.90 Aligned_cols=143 Identities=17% Similarity=0.269 Sum_probs=83.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 323 ~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
...-....+.++|+|++++.+ .||...|+.....+... .+....++|.+.+ -+|+-...++|+|
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n----------~yAv~~~~~~I~I 93 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN----------RYAVLESSSTIKI 93 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS----------EEEEE-TTS-EEE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecCc----------cEEEEECCCeEEE
Confidence 344457889999999999885 56777777643332211 2344567888855 3667777888999
Q ss_pred EeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCc
Q 011224 403 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT 482 (490)
Q Consensus 403 wd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~ 482 (490)
+.--.......+.. ...+..|-. |.+|+..+.+ .|.+||+.+++++..+.... |..+-|+++|+++|..+.+ +
T Consensus 94 ~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~ 166 (443)
T PF04053_consen 94 YKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-S 166 (443)
T ss_dssp EETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--S
T ss_pred EEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-e
Confidence 73222222112221 123455543 8888877655 89999999999999987543 8899999999999999865 6
Q ss_pred EEEEEe
Q 011224 483 VCVLDF 488 (490)
Q Consensus 483 v~v~~~ 488 (490)
+.|++.
T Consensus 167 i~il~~ 172 (443)
T PF04053_consen 167 IYILKY 172 (443)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777764
No 338
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.94 E-value=0.016 Score=56.10 Aligned_cols=90 Identities=12% Similarity=0.140 Sum_probs=58.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCC---------CCCCC-CCcEEEEEEE
Q 011224 326 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS---------GTNNP-NQQLILASAS 395 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~---------~~~~~-~~~~~l~sgs 395 (490)
..+.++..+|++++.|+...=|.|.++|+.++..++-+++....-..-...+... ....+ ...++++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 4577899999999999988889999999999887776665433211110011110 00001 1123445567
Q ss_pred CCCcEEEEeCCCCeEEEEee
Q 011224 396 FDSTVKLWDVELGKLLYSLN 415 (490)
Q Consensus 396 ~dg~i~iwd~~~~~~~~~~~ 415 (490)
.-|.|-||.+++|..+..+.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCCCCEEEEEE
Confidence 78999999999888876665
No 339
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.025 Score=55.54 Aligned_cols=189 Identities=19% Similarity=0.269 Sum_probs=103.5
Q ss_pred eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee----ccCeE-----EEEccC
Q 011224 224 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----SGPTL-----DVDWRN 294 (490)
Q Consensus 224 ~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~-----~~~~~~ 294 (490)
.|+||+..|.....+.--.+.+.++.|..+ ..|+.-..||+++++|+.... ++... ...+. ...+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence 599999998877765544489999999885 556677789999999986433 22111 11111 112222
Q ss_pred CceEEEEcCCCeEEEEE-cCCCcceeEe---cC-----CCC-CeeE-EEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 295 NVSFATSSTDNMIYVCK-IGENRPIKTF---AG-----HQG-EVNC-VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~-~~~~~~~~~~---~~-----h~~-~v~~-v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
+..++. ..++.+++.. .......+.+ .+ |.. .... ..++.+....+....++.+.+.+-...+. +
T Consensus 138 ~GivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 138 NGIVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CCEEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 333333 3334444332 2222111111 11 100 0001 23444555555555555665443222111 1
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC-CCCEEEEEECCCC
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTG 430 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spdg 430 (490)
...+++..++.||++. ++|.-..+|.+.+....-.+.+..+... ......+.|.-+.
T Consensus 214 -~~~~~i~~iavSpng~---------~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 -DSDGPIIKIAVSPNGK---------FIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred -cCCCCeEEEEECCCCC---------EEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 1246799999999987 6777788899999887766666665533 2344566665443
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.87 E-value=8e-05 Score=72.32 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=63.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 275 (490)
....|.|++++|+...|+.|..||.|.+||....... +..+.-..+.++|||+|..|++|+..|.+.+||+.-..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 4567999999999999999999999999998766443 33444556899999999999999999999999986543
No 341
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.87 E-value=0.023 Score=52.69 Aligned_cols=226 Identities=16% Similarity=0.136 Sum_probs=122.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee-----------
Q 011224 212 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF----------- 280 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~----------- 280 (490)
.++.|+.|..+| +.+++...........+..+|..+...|.-+.|++-+ |+++.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 567899998888 8888873222222222344599999998877766654 599999998754433211
Q ss_pred --e-eeccCeEEEE---ccCCceEEEEcCCCeEEEEEcCCC-----cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeE
Q 011224 281 --E-FHSGPTLDVD---WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349 (490)
Q Consensus 281 --~-~~~~~~~~~~---~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 349 (490)
. .....+..+. .......+.....+.|.++..... +..+.+.- ...+.+++|. ++.|+.|..+ ..
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~-~f 159 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK-GF 159 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-ce
Confidence 0 0011122222 122233333444447777665542 33344332 3567888888 5567666654 47
Q ss_pred EEEecCCCceeeeecccc------------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE--Eee
Q 011224 350 KIWNMKQDKYVHDLREHS------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN 415 (490)
Q Consensus 350 ~iwd~~~~~~~~~~~~~~------------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~ 415 (490)
.+.|+.++....-+.... .++..+.... + .+|++ .|..-.+.|. .|+... .+.
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-e~Ll~--~~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD---------N-EFLLC--YDNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC---------c-eEEEE--ecceEEEEcC-CCCcCcccEEE
Confidence 788888665432221111 1122222211 1 13332 2333333333 333222 222
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 460 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 460 (490)
-.....++++. ..||+..+.+ .|.||++.++++++++....
T Consensus 227 -W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 227 -WSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred -cCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 12234566663 4588776654 59999999999999987543
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00049 Score=68.10 Aligned_cols=120 Identities=16% Similarity=0.212 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEec--CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
..|.--++...+.+++.|+.-|.+++|+..+.....+. +-.+.+..+..++...+++.|+..|.|.++-++......
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~- 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD- 112 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-
Confidence 34555667788999999999999999998765443333 345566777788888888889989999988765532100
Q ss_pred eeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 280 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
..+++. .| ..|...|+|++|++++..|.+|..-|+|.+-.+.+
T Consensus 113 ----------------~~~~t~-~d-----------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 ----------------LDYVTP-CD-----------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ----------------ceeecc-cc-----------------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 001100 00 12778899999999999999999999998887766
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.84 E-value=5.6e-06 Score=80.36 Aligned_cols=234 Identities=21% Similarity=0.300 Sum_probs=138.3
Q ss_pred CCeEEEEEcCCC--CEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCC-CEEEEEe----CCCeEEEEEc
Q 011224 202 KDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG-DYLLTGS----CDKTAIVWDV 271 (490)
Q Consensus 202 ~~V~~~~~s~~~--~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~-~~l~s~s----~D~~v~iwd~ 271 (490)
..+.|++++-+. .+++.|..+|.|-+-..... -.....+|..+.++++|++-. +.|++|- .|-.+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 457788776543 47888999999998865432 233567788999999999864 4455442 2457899998
Q ss_pred cCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
.++-. .|- ....|.+ +.....++++|-.+.+++.+|.....+.+
T Consensus 137 ~s~lt--------vPk------e~~~fs~----------------------~~l~gqns~cwlrd~klvlaGm~sr~~~i 180 (783)
T KOG1008|consen 137 NSLLT--------VPK------ESPLFSS----------------------STLDGQNSVCWLRDTKLVLAGMTSRSVHI 180 (783)
T ss_pred ccccC--------CCc------ccccccc----------------------ccccCccccccccCcchhhcccccchhhh
Confidence 76521 000 0000100 01223447888889999999999999999
Q ss_pred EecCCCce-eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEe-CCCCeE-EEEeeCCC----CCEEEE
Q 011224 352 WNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD-VELGKL-LYSLNGHR----EPVYSL 424 (490)
Q Consensus 352 wd~~~~~~-~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd-~~~~~~-~~~~~~h~----~~v~~l 424 (490)
+|++.... ...+ ....+..+...|-.. .++++-+ ||.|.+|| .++-+. +..+.... ..+..+
T Consensus 181 fdlRqs~~~~~sv--nTk~vqG~tVdp~~~--------nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 181 FDLRQSLDSVSSV--NTKYVQGITVDPFSP--------NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred hhhhhhhhhhhhh--hhhhcccceecCCCC--------Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence 99874321 1111 122333444445221 2666554 99999999 443332 22222111 248999
Q ss_pred EECCCCC-EEEEEeCC-CcEEEEEcCC----C----eEEEE------EecC---CCEEEEEECCCC--CEEEEEECCCc
Q 011224 425 AFSPTGE-YLASGSLD-KSMHIWSLKE----G----KIVKT------YTGN---GGIFEVCWNKEG--DKIAACFANHT 482 (490)
Q Consensus 425 ~~spdg~-~l~s~s~d-g~i~iw~~~~----~----~~~~~------~~~~---~~v~~~~~~~~g--~~la~~~~d~~ 482 (490)
+|.|... .|++.+.| ++|+++++.. + ..... ++.. ..|..++||+.. .....+..+.+
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~ 328 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQ 328 (783)
T ss_pred EeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCC
Confidence 9999753 45566554 7899998752 1 11111 1222 357888899976 24444444433
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.018 Score=50.58 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=47.7
Q ss_pred CCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCE-EEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 213 GTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
|.+++.|.+.|.+++-+.... +...+..- +.| ......+++..+..|+.|++....|.++..++-...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 677999999999999887654 33333221 112 122346788899999999999999999887665443
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00075 Score=68.06 Aligned_cols=259 Identities=20% Similarity=0.231 Sum_probs=149.0
Q ss_pred EEEEcCCCCEEEEEeC----CCeEEEEECCCceeE--EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 206 TLDWNGEGTLLATGSY----DGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~----dg~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
-..|+|...+|+.++. .|.|.||--.+.+.. +..-| +++++|||..-.|+.|=.-|.+-+|...+.+....
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3478999889888765 478888865554321 22222 46799999988888888889999999988888777
Q ss_pred eeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeE--ecCCC----CCeeEEEEcCCCC------EEEEEeCC
Q 011224 280 FEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKT--FAGHQ----GEVNCVKWDPTGS------LLASCSDD 346 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~--~~~h~----~~v~~v~~~~~~~------~l~s~~~d 346 (490)
...|..++..++|.. ...++++..-|.+..|.......++. +..|. -...|...++++. ..+..+++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 788999999999975 45677888889999998764322221 12232 1245666677642 12333333
Q ss_pred CeEE-EEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC--------
Q 011224 347 VTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-------- 417 (490)
Q Consensus 347 g~i~-iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-------- 417 (490)
..+- .++++....-..+. +.+ .|.|. .+..++.+|+|+..|-. |++....+..
T Consensus 177 ~alD~~fnwk~~~a~rs~~-ksg-------v~~g~---------~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~ 238 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDE-KSG-------VPKGT---------EFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFM 238 (1416)
T ss_pred hhhcccccCccchhhcccc-ccC-------CCCCc---------EEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHh
Confidence 3332 44443211111110 100 13332 45567789999888743 4443333211
Q ss_pred --CCCEEE--------EEECC-CCCE---------EEEEeCCCcEEEEEcCCCeEEE----EEecCCCEEEEEECCCCCE
Q 011224 418 --REPVYS--------LAFSP-TGEY---------LASGSLDKSMHIWSLKEGKIVK----TYTGNGGIFEVCWNKEGDK 473 (490)
Q Consensus 418 --~~~v~~--------l~~sp-dg~~---------l~s~s~dg~i~iw~~~~~~~~~----~~~~~~~v~~~~~~~~g~~ 473 (490)
...|.. +-|.+ .|.. --.|+..|.|-+=... |-+.+ .+.....++++|+...+..
T Consensus 239 ~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-GvLr~~eKyg~e~ge~~~c~cY~~~~~~ 317 (1416)
T KOG3617|consen 239 GYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-GVLRKSEKYGLELGEGILCMCYGEKEIR 317 (1416)
T ss_pred cccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-ccccCCcchhhhcCCceEEEEEeccceE
Confidence 112211 11211 1110 0012223332222211 11111 1122346899999999999
Q ss_pred EEEEECCCcEEEE
Q 011224 474 IAACFANHTVCVL 486 (490)
Q Consensus 474 la~~~~d~~v~v~ 486 (490)
|++|...|.+.+|
T Consensus 318 l~agt~~gnv~~w 330 (1416)
T KOG3617|consen 318 LWAGTKEGNVTIW 330 (1416)
T ss_pred EEecccCCcEEEe
Confidence 9999999999998
No 346
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00012 Score=71.27 Aligned_cols=93 Identities=20% Similarity=0.408 Sum_probs=78.0
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEE-EEEECCCCCEEEEEeCCCcEEEE
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~spdg~~l~s~s~dg~i~iw 445 (490)
...+..+.|+|.-. ++|.+..+|.|-+..+. .+.++++.-|...++ +++|.|||++||.|=.||+|++.
T Consensus 20 ~~~i~~~ewnP~~d---------LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD---------LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccc---------hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 34577888988764 78999999999999887 788889987777777 99999999999999999999999
Q ss_pred EcCCCeEEEE--EecCCCEEEEEECC
Q 011224 446 SLKEGKIVKT--YTGNGGIFEVCWNK 469 (490)
Q Consensus 446 ~~~~~~~~~~--~~~~~~v~~~~~~~ 469 (490)
|+.+|..+.. +.....|..+-|.|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 9999988776 44455677777764
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.79 E-value=0.028 Score=52.21 Aligned_cols=253 Identities=14% Similarity=0.138 Sum_probs=140.8
Q ss_pred CeEEEEECCCce-eEEecCCCCCEEEEEecCCCCEEEEEe----------CCCeEEEEEccCcceeEeeeeecc-CeEEE
Q 011224 223 GQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQFEFHSG-PTLDV 290 (490)
Q Consensus 223 g~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~ 290 (490)
+.+.|.|.+... +-.+.. +-.-.+..+|+++.+++++ ..-.|.+||..+-.....+..... ....+
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 367777765432 222221 1122355689999888754 234688999998877666554433 11111
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCee-------EEEEcCCC-CEEEEEeCCCeEEEEecC-CCceee
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-------CVKWDPTG-SLLASCSDDVTAKIWNMK-QDKYVH 361 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~-------~v~~~~~~-~~l~s~~~dg~i~iwd~~-~~~~~~ 361 (490)
.....+..+.+++.+++++......+....-....+. |.-.-|.+ .-|.+-+.||++.-..+. .++...
T Consensus 95 --~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 --PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp ----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred --ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 1233455666777778877766555444433332221 33333433 457788899999888877 444332
Q ss_pred eeccccccEEEEEEcCCCCCCC-CC-----CCcEEEEEEECCCcEEEEeCCCCeEEE--EeeCC----------CCCEEE
Q 011224 362 DLREHSKEIYTIRWSPTGSGTN-NP-----NQQLILASASFDSTVKLWDVELGKLLY--SLNGH----------REPVYS 423 (490)
Q Consensus 362 ~~~~~~~~i~~v~~~p~g~~~~-~~-----~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~h----------~~~v~~ 423 (490)
.. +-.|.++..... ++ ...+++ -+.+|.|+--|+....... .+.-. .+.-.-
T Consensus 173 ~~--------t~~F~~~~dp~f~~~~~~~~~~~~~F--~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~ 242 (342)
T PF06433_consen 173 KS--------TKVFDPDDDPLFEHPAYSRDGGRLYF--VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL 242 (342)
T ss_dssp EE--------EEESSTTTS-B-S--EEETTTTEEEE--EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred ee--------ccccCCCCcccccccceECCCCeEEE--EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence 11 112333221110 10 112222 5688888888876554322 12110 012334
Q ss_pred EEECCCCCEEEEEe---CCC-------cEEEEEcCCCeEEEEEecCCCEEEEEECCCCC-EEEEE-ECCCcEEEEEee
Q 011224 424 LAFSPTGEYLASGS---LDK-------SMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 424 l~~spdg~~l~s~s---~dg-------~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~-~la~~-~~d~~v~v~~~~ 489 (490)
+++++....|..-- .++ .|.++|+.+++.+..+.....+.+++.+.+.+ +|.+. ..++.+.|||.+
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 78887655544322 222 48889999999999998766788999999887 55444 457899999974
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=5.4e-05 Score=45.79 Aligned_cols=36 Identities=44% Similarity=0.793 Sum_probs=32.8
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEe
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 170 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd 170 (490)
+..+..|...|.+++|+|.+.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778999999999999999999999999999996
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=0.019 Score=50.44 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=107.2
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeEeee----eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCee
Q 011224 254 GDYLLTGSCDKTAIVWDVKTEEWKQQFE----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN 329 (490)
Q Consensus 254 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~ 329 (490)
..+++.||..+.+..-|..++...-.-. ....++. -+..++.+...+.+++.+..++..+..|..-..--.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 3567788888888888888876543211 1111222 123367788889999999988877766653322223
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcC-CCCCCCCCCCcEEEEEEECCCcEEEEeCCCC
Q 011224 330 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG 408 (490)
Q Consensus 330 ~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~ 408 (490)
.....+++.++..|+.|++....|.++..++...+-......+-+..| ++ . |..+...|.+---.....
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~--------s--ly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDG--------S--LYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCc--------e--EEEEeccceEEEEccCCC
Confidence 345678999999999999999999999988877554333222223333 22 1 222333343333222222
Q ss_pred --eEEEEeeCCCCCEEE--EEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCE
Q 011224 409 --KLLYSLNGHREPVYS--LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 462 (490)
Q Consensus 409 --~~~~~~~~h~~~v~~--l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v 462 (490)
..++... ..+||.+ +. -++++..+.-||.+.-++ ..|+.+..+...++|
T Consensus 168 ~~~~~w~~~-~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpI 220 (354)
T KOG4649|consen 168 SSTEFWAAT-RFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPI 220 (354)
T ss_pred Ccceehhhh-cCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeecCCCce
Confidence 1111111 1123211 11 134555566677777777 556666666555554
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.041 Score=54.04 Aligned_cols=197 Identities=11% Similarity=0.178 Sum_probs=92.3
Q ss_pred eEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe-------cCCCCCeeEEEEcCCC
Q 011224 265 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-------AGHQGEVNCVKWDPTG 337 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-------~~h~~~v~~v~~~~~~ 337 (490)
.|.+|+.. |..+..+....+.+..+.|..+..++.-..||.+++++..... ...+ .-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 35666543 3334444444477889999888888888999999999986443 1111 0011112222333345
Q ss_pred CEEEEEeCCCeEEEEecCCCc-eeeeeccccccEEEEEEcCCCCCC--CCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe
Q 011224 338 SLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGT--NNPNQQLILASASFDSTVKLWDVELGKLLYSL 414 (490)
Q Consensus 338 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~v~~~p~g~~~--~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 414 (490)
-.+.+ .++.+.+-.-.... ....+...........+.+..... ...... +.+....++.+.+.+-...+. +
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcccccc---c
Confidence 33333 34444443222211 111111000000001111110000 000000 112222233343222111101 1
Q ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC--CCEEEEEECCC
Q 011224 415 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKE 470 (490)
Q Consensus 415 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~--~~v~~~~~~~~ 470 (490)
. ..+++..++.||+|++||.-..+|.+.|.+..-.+.+..+... .....+.|=-+
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 1 2357999999999999999999999999886544444444332 33444445433
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.049 Score=53.04 Aligned_cols=234 Identities=15% Similarity=0.144 Sum_probs=144.1
Q ss_pred EEEEEecCCCCEEEEEe-CCCeEEEEEccCcceeEeeeee-ccC-eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe
Q 011224 245 IFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFH-SGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 321 (490)
Q Consensus 245 V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 321 (490)
...+...+.+..++... ....+..-+............. ..+ -..+.......++....++.|.+.+......+...
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~ 112 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI 112 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence 34666777775443332 2224555444421111111111 111 11222334456777777888888886665544433
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeC---CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC
Q 011224 322 AGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS 398 (490)
Q Consensus 322 ~~h~~~v~~v~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg 398 (490)
.-- .....++++|+++.+..+.. ++++.+.|..+.+.+.....-..+ ..+++.|+|. .++++-..++
T Consensus 113 ~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~--------~vyv~~~~~~ 182 (381)
T COG3391 113 PVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGN--------KVYVTNSDDN 182 (381)
T ss_pred eec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCC--------eEEEEecCCC
Confidence 211 14567999999977655544 688999999888887775433334 7888999886 2445556889
Q ss_pred cEEEEeCCCCeEEE-E----eeCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEcCCCeEEEE-EecCC-CEEEEEEC
Q 011224 399 TVKLWDVELGKLLY-S----LNGHREPVYSLAFSPTGEYLASGSL---DKSMHIWSLKEGKIVKT-YTGNG-GIFEVCWN 468 (490)
Q Consensus 399 ~i~iwd~~~~~~~~-~----~~~h~~~v~~l~~spdg~~l~s~s~---dg~i~iw~~~~~~~~~~-~~~~~-~v~~~~~~ 468 (490)
.|.+.|........ . +.-+ ..-..++++|+|.++...-. ++.+...|..++.+... +.... ....+..+
T Consensus 183 ~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~ 261 (381)
T COG3391 183 TVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVD 261 (381)
T ss_pred eEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeEC
Confidence 99999977655542 1 1112 22367899999986655433 36999999999887765 33323 46788999
Q ss_pred CCCCEEEEE-ECCCcEEEEEee
Q 011224 469 KEGDKIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 469 ~~g~~la~~-~~d~~v~v~~~~ 489 (490)
|+|+.+-.. +..+.+.+.|.+
T Consensus 262 p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 262 PAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCCCEEEEEecCCCeEEEEeCC
Confidence 999977776 445778877643
No 352
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.73 E-value=0.00012 Score=44.11 Aligned_cols=38 Identities=53% Similarity=0.928 Sum_probs=33.8
Q ss_pred eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 409 KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 409 ~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
+++..+..|...|+++.|+|.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 353
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.71 E-value=0.015 Score=56.33 Aligned_cols=269 Identities=13% Similarity=0.103 Sum_probs=135.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC---cc----
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EE---- 275 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---~~---- 275 (490)
.|+.+.|+++..-|+.|...|.|-||......... ..-..+-....+.+- ...++.-.+-|+.. ..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc------cccCCCcceEEehhhCCcccccc
Confidence 48899999999999999999999998643211100 000001111111110 00111222223221 11
Q ss_pred --eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe--cC------CCCCeeEEEEcC-----CC---
Q 011224 276 --WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF--AG------HQGEVNCVKWDP-----TG--- 337 (490)
Q Consensus 276 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~------h~~~v~~v~~~~-----~~--- 337 (490)
....+....+++.++...+-..++.+..+|.+.+.|++.+..+..- .. ....++++.|.. |+
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred cCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 1122334467888888877777788999999999999887765441 12 234577888762 33
Q ss_pred CEEEEEeCCCeEEEEecCC---Cceeee----eccccccEEEEE-EcCC-CCCCC------------CCCCcEEEEEEEC
Q 011224 338 SLLASCSDDVTAKIWNMKQ---DKYVHD----LREHSKEIYTIR-WSPT-GSGTN------------NPNQQLILASASF 396 (490)
Q Consensus 338 ~~l~s~~~dg~i~iwd~~~---~~~~~~----~~~~~~~i~~v~-~~p~-g~~~~------------~~~~~~~l~sgs~ 396 (490)
-.+++|+..|.+.+|.+.- +.+... ...+..++..+. ++.+ |.... ...+. +++.+ .
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g-~vVvv-S 233 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG-YVVVV-S 233 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E-EEEEE--
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc-EEEEE-c
Confidence 4688999999999997641 222211 123455665554 3222 21100 01112 33333 4
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCCCEEEEEE-----CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-----CEEEEE
Q 011224 397 DSTVKLWDVELGKLLYSLNGHREPVYSLAF-----SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-----GIFEVC 466 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-----~v~~~~ 466 (490)
+..||++...+.+...........+..+.+ ...+..|++-..+|.|++|.+..-+.+....... .+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 678999999887776554422223344455 2356788888999999999999877776665422 133567
Q ss_pred ECCCCCEEEEEECC
Q 011224 467 WNKEGDKIAACFAN 480 (490)
Q Consensus 467 ~~~~g~~la~~~~d 480 (490)
++++|..+.-.+..
T Consensus 314 is~~Gdi~~~~gps 327 (395)
T PF08596_consen 314 ISRNGDIFYWTGPS 327 (395)
T ss_dssp E-TTS-EEEE-SSS
T ss_pred ECCCCCEEEEeCcc
Confidence 78899877665443
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.71 E-value=0.032 Score=53.87 Aligned_cols=280 Identities=18% Similarity=0.240 Sum_probs=130.2
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeec-ccc-cCCCCeEEEEEcCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTN-EKSKDVTTLDWNGE 212 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~V~~~~~s~~ 212 (490)
+..+......+....|||+|+.+|-.. ++.|.++++.++....-...+.-.+. ..... .+. +.-..-..+.||||
T Consensus 35 ~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~--nG~~dwvyeEEv~~~~~~~~WSpd 111 (353)
T PF00930_consen 35 ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY--NGVPDWVYEEEVFDRRSAVWWSPD 111 (353)
T ss_dssp EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE--ESB--HHHHHHTSSSSBSEEE-TT
T ss_pred eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE--cCccceeccccccccccceEECCC
Confidence 333333366788999999999988775 57899998765532111111100000 00000 000 00122356899999
Q ss_pred CCEEEEEeCC-CeEEEEECCCceeEEecCCCC---CEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee-e----ee
Q 011224 213 GTLLATGSYD-GQARIWSTNGDLKCTLSKHKG---PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-E----FH 283 (490)
Q Consensus 213 ~~~l~sg~~d-g~i~iw~~~~~~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~----~~ 283 (490)
|++|+....| ..|+.+.. ........ .+..+.+-.-|.-... -.+.++|+.+++....- . ..
T Consensus 112 ~~~la~~~~d~~~v~~~~~-----~~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~ 182 (353)
T PF00930_consen 112 SKYLAFLRFDEREVPEYPL-----PDYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQ 182 (353)
T ss_dssp SSEEEEEEEE-TTS-EEEE-----EEESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTS
T ss_pred CCEEEEEEECCcCCceEEe-----eccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCC
Confidence 9999876654 33333321 01111111 2344444222221111 13556777776643211 1 11
Q ss_pred ccCeEEEEccCCce-EEEE--cCC---CeEEEEEcCCCcceeEecC-CCCC---eeEEEEc-CCCC-EEEEEeCCCeEEE
Q 011224 284 SGPTLDVDWRNNVS-FATS--STD---NMIYVCKIGENRPIKTFAG-HQGE---VNCVKWD-PTGS-LLASCSDDVTAKI 351 (490)
Q Consensus 284 ~~~~~~~~~~~~~~-~~~~--~~d---~~i~~~~~~~~~~~~~~~~-h~~~---v~~v~~~-~~~~-~l~s~~~dg~i~i 351 (490)
..-+..+.|.++.. ++.. ..+ ..+.+++..++.....+.. ..+. .....+. +++. +|.....||.-+|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 12245566754433 3332 221 2355666655443222221 1222 2355554 5554 4555557776555
Q ss_pred E--ecCCCceeeeeccccccEEE-EEEcCCCCCCCCCCCcEEEEEEECCC----cEEEEeCCCCeEEEEeeCCCCCEEEE
Q 011224 352 W--NMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDS----TVKLWDVELGKLLYSLNGHREPVYSL 424 (490)
Q Consensus 352 w--d~~~~~~~~~~~~~~~~i~~-v~~~p~g~~~~~~~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l 424 (490)
| +...+. ...+....-.|.. +.|++.+. .+.+++..++ .|..-++..+..+..+......-..+
T Consensus 263 y~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~--------~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~ 333 (353)
T PF00930_consen 263 YLYDLDGGK-PRQLTSGDWEVTSILGWDEDNN--------RIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSA 333 (353)
T ss_dssp EEEETTSSE-EEESS-SSS-EEEEEEEECTSS--------EEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEE
T ss_pred EEEcccccc-eeccccCceeecccceEcCCCC--------EEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEE
Confidence 4 554444 3344444455644 56777654 3555555432 44444555234455666444433699
Q ss_pred EECCCCCEEEE
Q 011224 425 AFSPTGEYLAS 435 (490)
Q Consensus 425 ~~spdg~~l~s 435 (490)
.|||+|++++-
T Consensus 334 ~~Spdg~y~v~ 344 (353)
T PF00930_consen 334 SFSPDGKYYVD 344 (353)
T ss_dssp EE-TTSSEEEE
T ss_pred EECCCCCEEEE
Confidence 99999998864
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.042 Score=51.32 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=90.2
Q ss_pred CCeeEEEEcCCCCEEEEEeC-----C----CeEEEEecC-CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE
Q 011224 326 GEVNCVKWDPTGSLLASCSD-----D----VTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 395 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs 395 (490)
...+.+...|+|.+.++... . ..-.||.+. .+..+..+..+-..-..++|||+++ .+.++=+
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~--------tly~aDT 182 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK--------TLYVADT 182 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC--------EEEEEeC
Confidence 35677888899987665444 0 112455555 3444444444344457899999986 2455555
Q ss_pred CCCcEEEEeCCC--C----eE-EEEeeCCCCCEEEEEECCCCCEEEEEeCCC-cEEEEEcCCCeEEEEEecC-CCEEEEE
Q 011224 396 FDSTVKLWDVEL--G----KL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK-SMHIWSLKEGKIVKTYTGN-GGIFEVC 466 (490)
Q Consensus 396 ~dg~i~iwd~~~--~----~~-~~~~~~h~~~v~~l~~spdg~~l~s~s~dg-~i~iw~~~~~~~~~~~~~~-~~v~~~~ 466 (490)
..+.|.-|++.. + +. ...+....+..-.++...+|.+-+++-.+| .|.+|+.. |+++..+.-. ..+.+++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 667787777652 1 11 122222334455677777888776555554 89999988 9988888765 5678888
Q ss_pred EC-CCCCEEEEEECC
Q 011224 467 WN-KEGDKIAACFAN 480 (490)
Q Consensus 467 ~~-~~g~~la~~~~d 480 (490)
|- |+.+.|...+..
T Consensus 262 FgG~~~~~L~iTs~~ 276 (307)
T COG3386 262 FGGPDLNTLYITSAR 276 (307)
T ss_pred EeCCCcCEEEEEecC
Confidence 84 456655554443
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.65 E-value=0.028 Score=53.45 Aligned_cols=208 Identities=14% Similarity=0.144 Sum_probs=118.8
Q ss_pred eEEEEEccCcceeEeeeeeccC-eE---EEEccC-----CceEEEEcC----------CCeEEEEEcCCC----cceeEe
Q 011224 265 TAIVWDVKTEEWKQQFEFHSGP-TL---DVDWRN-----NVSFATSST----------DNMIYVCKIGEN----RPIKTF 321 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~-~~---~~~~~~-----~~~~~~~~~----------d~~i~~~~~~~~----~~~~~~ 321 (490)
.|++.|..+.+.+..+...... +. .+.+.. ...++.|.. .|.++++.+... ..+...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5777777777766666554432 22 223332 334444321 288999998874 222222
Q ss_pred --cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc-eeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECC
Q 011224 322 --AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397 (490)
Q Consensus 322 --~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d 397 (490)
....++|.+++-- .+. |+.+. .+.|.+|++...+ ....-. .....+.++....+ +++.|..-
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-----------~I~vgD~~ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-----------YILVGDAM 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-----------EEEEEESS
T ss_pred EEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-----------EEEEEEcc
Confidence 2346789888766 444 44333 4789999998777 432211 12235566654322 67788888
Q ss_pred CcEEEEeCCC-CeEEEEe--eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC-------C--eEE--EEEecCCCEE
Q 011224 398 STVKLWDVEL-GKLLYSL--NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE-------G--KIV--KTYTGNGGIF 463 (490)
Q Consensus 398 g~i~iwd~~~-~~~~~~~--~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~-------~--~~~--~~~~~~~~v~ 463 (490)
..+.++.++. ...+..+ ......++++.|-+++..++.+..+|.|.++.... + ++. ..+.-...|+
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~ 228 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN 228 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence 8888775442 2322222 22345689999987777899999999999998762 2 232 3334445577
Q ss_pred EE---EECC--CCC------EEEEEECCCcEEEE
Q 011224 464 EV---CWNK--EGD------KIAACFANHTVCVL 486 (490)
Q Consensus 464 ~~---~~~~--~g~------~la~~~~d~~v~v~ 486 (490)
++ ++.| .+. .++.++.+|.|.++
T Consensus 229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 77 5556 222 48888899998743
No 357
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0002 Score=69.86 Aligned_cols=69 Identities=17% Similarity=0.367 Sum_probs=60.7
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe-cCCCEE-EEEECCCCCEEEEEECCCcEEEEEee
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIF-EVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~~~v~-~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.|.-+.|+|.-.+||.+..+|.|.+..+. .+.+.+++ ++..+. +++|.|||+.||.|..||+|.+.|+-
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 47788999999999999999999999988 77778887 444565 99999999999999999999999974
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.52 E-value=0.033 Score=54.02 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=117.0
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCC-CCCC--------------CCceeEEEEe---------e--eccc
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-GAQN--------------GPLNVLVLKH---------V--KGRT 197 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~-~~~~--------------~~~~~~~~~~---------~--~~~~ 197 (490)
.|+.+.|.++..-|+.|-..|.|.||.+....... .... ++-.+..+.. + ..-.
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999999876543322 0000 0100111100 0 0011
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeE---EecC------CCCCEEEEEecC-----CC---CEEEEE
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC---TLSK------HKGPIFSLKWNK-----KG---DYLLTG 260 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~---~~~~------h~~~V~~l~~~~-----~~---~~l~s~ 260 (490)
....++|++++.| |=-+++.|..+|.+.|.|..+..+. .+.. ....|+++.|.. ++ -.|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1236789999997 5569999999999999999775332 1222 234678888862 22 468899
Q ss_pred eCCCeEEEEEccC---cceeEeee----eeccCeEEEEccC----------------------CceEEEEcCCCeEEEEE
Q 011224 261 SCDKTAIVWDVKT---EEWKQQFE----FHSGPTLDVDWRN----------------------NVSFATSSTDNMIYVCK 311 (490)
Q Consensus 261 s~D~~v~iwd~~~---~~~~~~~~----~~~~~~~~~~~~~----------------------~~~~~~~~~d~~i~~~~ 311 (490)
...|.+.+|.+.- +.+...+. .+.+++..+..-+ -..++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999997641 33333332 2334444433210 01245555567788887
Q ss_pred cCCCcceeEecCCCCCeeEEEE-----cCCCCEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 312 IGENRPIKTFAGHQGEVNCVKW-----DPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 312 ~~~~~~~~~~~~h~~~v~~v~~-----~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
....+.........-....+.+ ...+..|++-..+|.|++|.+-.-+.+..+.
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 7665544333211112223334 2356678888999999999998766665543
No 359
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.51 E-value=2.4e-05 Score=76.13 Aligned_cols=182 Identities=16% Similarity=0.275 Sum_probs=111.9
Q ss_pred ceEEEEcCCCeEEEEEcCCCcc--eeEecCCCCCeeEEEEcCC-CCEEEEEe----CCCeEEEEecCCCc--eee--eec
Q 011224 296 VSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPT-GSLLASCS----DDVTAKIWNMKQDK--YVH--DLR 364 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~-~~~l~s~~----~dg~i~iwd~~~~~--~~~--~~~ 364 (490)
..++.|..+|.|-+...+.... -....+|..+.++++|++- .++||.|- .|..+.|||+.++- +.. .|.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs 150 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS 150 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence 3455667778887777665332 2234567788999999985 45566653 35679999998762 111 111
Q ss_pred c-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECC-CCCEEEEEeCCCc
Q 011224 365 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKS 441 (490)
Q Consensus 365 ~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~sp-dg~~l~s~s~dg~ 441 (490)
. ......+++|-.+.. ++.+|.....++++|++.. .....+. +..+..+..+| .+.|+++-. ||.
T Consensus 151 ~~~l~gqns~cwlrd~k---------lvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs~~-dg~ 218 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTK---------LVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCSNS-DGD 218 (783)
T ss_pred cccccCccccccccCcc---------hhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceeccc-cCc
Confidence 1 122233556553332 6778888899999998832 1112221 22455677778 677888766 999
Q ss_pred EEEEE-cCCCe-EEEEEecC-----CCEEEEEECCCCC-EEEEEEC-CCcEEEEEee
Q 011224 442 MHIWS-LKEGK-IVKTYTGN-----GGIFEVCWNKEGD-KIAACFA-NHTVCVLDFR 489 (490)
Q Consensus 442 i~iw~-~~~~~-~~~~~~~~-----~~v~~~~~~~~g~-~la~~~~-d~~v~v~~~~ 489 (490)
|.+|| .++-+ .+..+... ..+..++|.|--. .++++.. .++|+.|+++
T Consensus 219 iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 219 IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 99999 33322 22222221 2489999999654 5555544 5688888875
No 360
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.51 E-value=0.12 Score=52.50 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=141.5
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEEecCCC-CCEE----------EEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 214 TLLATGSYDGQARIWSTN-GDLKCTLSKHK-GPIF----------SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~-~~V~----------~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
..++.++.++.|+-.|.. ++.+..+.... ..+. .+++ .+..++.++.|+.+...|..+++.+-.+.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 455556666777777754 33333332110 0111 1122 23467788899999999999998765543
Q ss_pred eecc----CeEE-EEccCCceEEEEc-----CCCeEEEEEcCCCcceeEecCC---------------------------
Q 011224 282 FHSG----PTLD-VDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGH--------------------------- 324 (490)
Q Consensus 282 ~~~~----~~~~-~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h--------------------------- 324 (490)
.... .+.+ -...++..++..+ .++.|+.++..+++.+-.+..-
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 2110 0000 0011333343322 2577888887776654332210
Q ss_pred ----CCCe-eEEEEcCCCCEEEEEeCC-----C-----------eEEEEecCCCceeeeeccccccEEEE---------E
Q 011224 325 ----QGEV-NCVKWDPTGSLLASCSDD-----V-----------TAKIWNMKQDKYVHDLREHSKEIYTI---------R 374 (490)
Q Consensus 325 ----~~~v-~~v~~~~~~~~l~s~~~d-----g-----------~i~iwd~~~~~~~~~~~~~~~~i~~v---------~ 374 (490)
.+.+ ..+++.|...+|..+... + .|.-.|+++++..-.++.....+... .
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 0111 134666666666555422 2 45556778887765554422222111 1
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe------------eCCC-CCE--------------------
Q 011224 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL------------NGHR-EPV-------------------- 421 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~------------~~h~-~~v-------------------- 421 (490)
...+|. ...+++.+..+|.+.+.|-++|+.+... .... .++
T Consensus 308 ~~~~G~------~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~P 381 (527)
T TIGR03075 308 LKKDGK------PRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCP 381 (527)
T ss_pred eccCCc------EEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECC
Confidence 111221 1247888999999999999999886321 0000 000
Q ss_pred --------EEEEECCCCCEEEEEeC---------------------------------CCcEEEEEcCCCeEEEEEecCC
Q 011224 422 --------YSLAFSPTGEYLASGSL---------------------------------DKSMHIWSLKEGKIVKTYTGNG 460 (490)
Q Consensus 422 --------~~l~~spdg~~l~s~s~---------------------------------dg~i~iw~~~~~~~~~~~~~~~ 460 (490)
..++|+|...++..... -|.|.-+|+.+|+++.......
T Consensus 382 g~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~ 461 (527)
T TIGR03075 382 GFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF 461 (527)
T ss_pred CCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC
Confidence 12566666555443222 2468888888888877665332
Q ss_pred CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 461 GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 461 ~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
....-.....|.++..+..+|.++.+|.+
T Consensus 462 p~~~~~l~t~g~lvf~g~~~G~l~a~D~~ 490 (527)
T TIGR03075 462 PLWGGVLATAGDLVFYGTLEGYFKAFDAK 490 (527)
T ss_pred CCCCcceEECCcEEEEECCCCeEEEEECC
Confidence 21111122355677777889999988865
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.51 E-value=0.0032 Score=65.37 Aligned_cols=136 Identities=13% Similarity=0.176 Sum_probs=94.1
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCC-eeEEEEcC-----CCCEEEEEeCCCeEEEEecCCCc--eeee-ec--ccccc
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDP-----TGSLLASCSDDVTAKIWNMKQDK--YVHD-LR--EHSKE 369 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~-v~~v~~~~-----~~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~--~~~~~ 369 (490)
....+.|+-.|+..++.+..+..|... |..++-.. +..-.+.|-.+..+..||.+-.. ++.. .. .....
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~ 579 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN 579 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence 345678999999999999999877643 54443221 12345678888899999987542 3311 11 12334
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
..|++-+.+| +||.|+.+|.||+||--..+....+.+...||..|..+.||+||++.+ +..|.+++.
T Consensus 580 Fs~~aTt~~G----------~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDG----------YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ceEEEecCCc----------eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5666666666 699999999999999432233334667789999999999999988765 456777764
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.50 E-value=0.0065 Score=62.14 Aligned_cols=157 Identities=12% Similarity=0.159 Sum_probs=84.6
Q ss_pred CCeeEEEEcCCCCEEEEEe------CCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCC--CCcEEEEE-EEC
Q 011224 326 GEVNCVKWDPTGSLLASCS------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP--NQQLILAS-ASF 396 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~--~~~~~l~s-gs~ 396 (490)
..+..++++|+|+.++... .|+.-.||=...+.....+.. ......-.|+|+|.....- .....+++ ...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4678899999999887665 244444443222221122221 2236778899997521100 00011111 112
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEE---EEcCCCeE-E---EEE-ecCCC-EEEEEE
Q 011224 397 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI---WSLKEGKI-V---KTY-TGNGG-IFEVCW 467 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~i---w~~~~~~~-~---~~~-~~~~~-v~~~~~ 467 (490)
.+.+.+.++..+.... .....|..+.|||||..||... ++.|.+ -....|.. + ..+ ...+. +.+++|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 3344444554443322 2345799999999999887655 477777 33344541 1 111 22233 588999
Q ss_pred CCCCCEEEEEECCCcEEEEEe
Q 011224 468 NKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~~ 488 (490)
.+++.++ .+..++...||-+
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred ecCCEEE-EEecCCCCceEEE
Confidence 9999865 4444444445544
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.45 E-value=0.023 Score=43.41 Aligned_cols=90 Identities=11% Similarity=0.152 Sum_probs=64.3
Q ss_pred EEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEEC
Q 011224 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 468 (490)
Q Consensus 389 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~ 468 (490)
.-|+.||.|..||+|+-. ..+.++... ..|++|+-... ..++-|-.+|+|-+|+-. ..+........+.++++-
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCeEEEEEE
Confidence 468899999999999753 677777744 56788877766 557888899999999753 334444444456665543
Q ss_pred ---CCC-CEEEEEECCCcEE
Q 011224 469 ---KEG-DKIAACFANHTVC 484 (490)
Q Consensus 469 ---~~g-~~la~~~~d~~v~ 484 (490)
.|| ..|++|-.+|.|-
T Consensus 90 D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCCCCceEEEEEecCCeEE
Confidence 344 3899999999774
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.41 E-value=0.089 Score=47.40 Aligned_cols=198 Identities=13% Similarity=0.213 Sum_probs=110.8
Q ss_pred EecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeec-cCeEEEEccCCceEEEEc-CCCeEEEEEcC
Q 011224 237 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIG 313 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~i~~~~~~ 313 (490)
.+.+-...+.+|+|+|+.+ .+++....+.|...++ .++.+..+.... +..-.+.+..+..|+... .++.++++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4556666799999999866 4556677788888886 467777776553 556777787777776655 57888888874
Q ss_pred CCc---c---eeEec-----CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC---Cceee--ee------ccccccEE
Q 011224 314 ENR---P---IKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVH--DL------REHSKEIY 371 (490)
Q Consensus 314 ~~~---~---~~~~~-----~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~--~~------~~~~~~i~ 371 (490)
... . +..+. .+...+-.++|+|.++.|+.+-+..-..||.++. ...+. .. ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 11121 2345689999999887777777776677776653 11111 10 11223467
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC---------CCEEEEEECCCCCEEEEEeCCCcE
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR---------EPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
++.++|... .+++.......|..+| ..|+.+..+.-.. ..-..|+|.++|++.++ |.-+..
T Consensus 175 ~l~~~p~t~--------~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlf 244 (248)
T PF06977_consen 175 GLSYDPRTG--------HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLF 244 (248)
T ss_dssp EEEEETTTT--------EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEE
T ss_pred ceEEcCCCC--------eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceE
Confidence 778877653 3566677788899999 5677655432111 23678999999976655 455555
Q ss_pred EEE
Q 011224 443 HIW 445 (490)
Q Consensus 443 ~iw 445 (490)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.15 Score=49.63 Aligned_cols=217 Identities=18% Similarity=0.169 Sum_probs=139.8
Q ss_pred EEEEecCCCCEE-EEEeCCCeEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEc--CCCeEEEEEcCCCcceeEe
Q 011224 246 FSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSS--TDNMIYVCKIGENRPIKTF 321 (490)
Q Consensus 246 ~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~ 321 (490)
.++..++.+..+ ++...+..|.+.|..+............+ -..+++.....+++-. .++.+.+.+..+.+.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 467778888754 45555689999998777666555433322 2334444555666665 4788888888888777664
Q ss_pred cCCCCCeeEEEEcCCCCEEEEE-eCCCeEEEEecCCCceee-e---eccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 322 AGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVH-D---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 322 ~~h~~~v~~v~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~---~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
..-..+ ..+++.|+|+.+..+ ..++.|.+.|........ . .......-..+.++|+|. .+.++...
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~--------~~yV~~~~ 227 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGN--------RVYVANDG 227 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCC--------EEEEEecc
Confidence 433334 789999999965544 478899999976655442 1 111122335677888875 12233322
Q ss_pred --CCcEEEEeCCCCeEEEE-eeCCCCCEEEEEECCCCCEEEEEeC-CCcEEEEEcCCCeEEEEEecCC----CEEEEEEC
Q 011224 397 --DSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL-DKSMHIWSLKEGKIVKTYTGNG----GIFEVCWN 468 (490)
Q Consensus 397 --dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~----~v~~~~~~ 468 (490)
++.+...|..++..... ...-...-..+.++|+|.++.+... .+.+.+-|..+..+........ .++.+++.
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~ 307 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAIS 307 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccce
Confidence 36899999888777654 2211113466899999999887744 4889999998888877654322 25666666
Q ss_pred CCC
Q 011224 469 KEG 471 (490)
Q Consensus 469 ~~g 471 (490)
+..
T Consensus 308 ~~~ 310 (381)
T COG3391 308 PLY 310 (381)
T ss_pred eec
Confidence 654
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.005 Score=59.29 Aligned_cols=140 Identities=11% Similarity=0.217 Sum_probs=93.0
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCE-------EEEEeCCCeEEEEecCCCce--eeeecc
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-------LASCSDDVTAKIWNMKQDKY--VHDLRE 365 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-------l~s~~~dg~i~iwd~~~~~~--~~~~~~ 365 (490)
+..+..+.....++-.|+..++.+..+.-|.. |+-+.+.|+.+. -+.|-.|..|.-||.+-... +...+.
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~ 424 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQS 424 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeec
Confidence 34455566667788889988988888887766 777778877542 23466778888899873321 111111
Q ss_pred cc----ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE-EEEeeCCCCCEEEEEECCCCCEEEEEeCCC
Q 011224 366 HS----KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 366 ~~----~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
|+ ....|++-..+| +++.||.+|.||+||- .+.. ...+.+...+|..|..+.+|++|+..+ +.
T Consensus 425 kqy~~k~nFsc~aTT~sG----------~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~t 492 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG----------YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KT 492 (644)
T ss_pred cccccccccceeeecCCc----------eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-cc
Confidence 11 112333333333 7899999999999996 3433 345778889999999999999987655 44
Q ss_pred cEEEEEc
Q 011224 441 SMHIWSL 447 (490)
Q Consensus 441 ~i~iw~~ 447 (490)
.+.+-++
T Consensus 493 yLlLi~t 499 (644)
T KOG2395|consen 493 YLLLIDT 499 (644)
T ss_pred EEEEEEE
Confidence 5655554
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.38 E-value=0.0078 Score=62.59 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=91.4
Q ss_pred eCCCeEEEEecCCCceeeeecccccc-EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEE-ee--CC
Q 011224 344 SDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS-LN--GH 417 (490)
Q Consensus 344 ~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~-~~--~h 417 (490)
.....|.-.|+..|+.+.+...+... |..+ .|+.........+. +.|-.+..|..||.|... ++.. .. ..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~t--flGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQT--FLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCce--EEEECCCceEEeccCCCCCceeecccccccc
Confidence 34577888899999999998877643 4444 45544322222333 347778899999998532 3321 11 12
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE-EEec-CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-TYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~-~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
....+|++-+.+| +||.||.+|.|++||. .|+.-+ .+++ ..+|.+++.+.||++|++.+. ..+-+++.
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 2346777777766 6899999999999994 343333 3344 457999999999998776654 35666654
No 368
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.0011 Score=56.91 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeeeccc-cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee
Q 011224 337 GSLLASCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 415 (490)
Q Consensus 337 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 415 (490)
+.-+++|+.+|.|.+|.+............ ...|-+. -|.+. ...+..+++.||.||.|++.-.+.+-...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~--Ip~~~------~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG--IPNGR------DSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec--ccccc------ccceeEEeccCCceeeeccccCceeeeec
Confidence 456889999999999987632221111111 1111111 13332 12378899999999999999988888888
Q ss_pred CCC-CCEEEEEECCCCCEEEEE--eCCCcEEEEEcCC
Q 011224 416 GHR-EPVYSLAFSPTGEYLASG--SLDKSMHIWSLKE 449 (490)
Q Consensus 416 ~h~-~~v~~l~~spdg~~l~s~--s~dg~i~iw~~~~ 449 (490)
.|. .++..+..+..+.+|+.+ |.|..++.|++..
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 887 677777777778888888 8888999998764
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.17 Score=47.31 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=106.8
Q ss_pred EcCCCC-EEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec---
Q 011224 209 WNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS--- 284 (490)
Q Consensus 209 ~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--- 284 (490)
|.++.. ++.+--..+.|.-|+........+.. .+.+.++.....+..|+++. .-+.++++.++..+..+....
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCC
Confidence 555555 44455566788888876444444432 23334444444444565553 345666765555422221110
Q ss_pred --cCeEEEEccCCceEEEEcCC----------CeEEEEEcC-CCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEE
Q 011224 285 --GPTLDVDWRNNVSFATSSTD----------NMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK 350 (490)
Q Consensus 285 --~~~~~~~~~~~~~~~~~~~d----------~~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~ 350 (490)
...++........|..+... ..-.+|.+. .+..++.+..+-..-+.|+||||++.+..+.. .+.|.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 11122222223333332222 011344444 34445555555556789999999977665544 47777
Q ss_pred EEecCC-CceeeeeccccccEEEEE-----EcCCCCCCCCCCCcEEEEEEECCC-cEEEEeCCCCeEEEEeeCCCCCEEE
Q 011224 351 IWNMKQ-DKYVHDLREHSKEIYTIR-----WSPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHREPVYS 423 (490)
Q Consensus 351 iwd~~~-~~~~~~~~~~~~~i~~v~-----~~p~g~~~~~~~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~h~~~v~~ 423 (490)
-|++.. ...+ .. ....+. -.|+|... ..+..++. ++-.+| .|..|+.. ++++..+.-....+++
T Consensus 189 r~~~d~~~g~~-----~~-~~~~~~~~~~~G~PDG~~v-DadG~lw~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 189 RYDLDPATGPI-----GG-RRGFVDFDEEPGLPDGMAV-DADGNLWV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred EEecCcccCcc-----CC-cceEEEccCCCCCCCceEE-eCCCCEEE-ecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 777652 1100 00 000111 12333211 11122332 444443 89999988 8888887766567788
Q ss_pred EEEC-CCCCEEEE
Q 011224 424 LAFS-PTGEYLAS 435 (490)
Q Consensus 424 l~~s-pdg~~l~s 435 (490)
++|- |+.+.|..
T Consensus 260 ~~FgG~~~~~L~i 272 (307)
T COG3386 260 PAFGGPDLNTLYI 272 (307)
T ss_pred ceEeCCCcCEEEE
Confidence 8884 44444443
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.23 E-value=0.25 Score=48.82 Aligned_cols=241 Identities=16% Similarity=0.253 Sum_probs=122.0
Q ss_pred cceeEEEECCCCCEEEEE-ECCC----cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 143 SEVCACAWSPAGSLLASG-SGDS----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sg-s~D~----~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
..+..+++||+|++||-+ +..| .|++.|+.+++... ..+... .-..+.|.++++.|+
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------d~i~~~---------~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------DGIENP---------KFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------EEEEEE---------ESEEEEECTTSSEEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------Cccccc---------ccceEEEeCCCCEEE
Confidence 345578899999977743 3333 59999998874210 011110 012389999988877
Q ss_pred EEeCCC-----------eEEEEECCCce---eEEecCCCCC--EEEEEecCCCCEEEEEeCC----CeEEEEEccCc---
Q 011224 218 TGSYDG-----------QARIWSTNGDL---KCTLSKHKGP--IFSLKWNKKGDYLLTGSCD----KTAIVWDVKTE--- 274 (490)
Q Consensus 218 sg~~dg-----------~i~iw~~~~~~---~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~--- 274 (490)
-...+. .|+.|.+.... ...+...... ...+..++++++|+..+.. ..+.+.++..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 665443 36777765432 2344443333 5678889999987643332 23666677664
Q ss_pred --ceeEeeeeeccCeEEEEccCCceEEEEc---CCCeEEEEEcCCCcc---eeEecCCCCC--eeEEEEcCCCC-EEEEE
Q 011224 275 --EWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP---IKTFAGHQGE--VNCVKWDPTGS-LLASC 343 (490)
Q Consensus 275 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~---~~~~~~h~~~--v~~v~~~~~~~-~l~s~ 343 (490)
.+........+....+....+..++.+. ..+.|...++..... ...+..+... +..+.. .+. +++.-
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~ 343 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSY 343 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEE
Confidence 3333222222333344444444444442 345666677766542 2245555553 444444 344 44555
Q ss_pred eCCC--eEEEEecCCCceeeeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEEC--CCcEEEEeCCCCeE
Q 011224 344 SDDV--TAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDVELGKL 410 (490)
Q Consensus 344 ~~dg--~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~--dg~i~iwd~~~~~~ 410 (490)
..++ .|+++++..+.....+.. ..+.+..+...+.+. .+++...|. -+++.-||+.+++.
T Consensus 344 ~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~-------~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 344 RENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSD-------ELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-S-------EEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCC-------EEEEEEeCCCCCCEEEEEECCCCCE
Confidence 5555 477888873333333222 223334433223221 233333333 24566667766654
No 371
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.016 Score=60.55 Aligned_cols=76 Identities=24% Similarity=0.430 Sum_probs=59.5
Q ss_pred CCEEEEEeCCCeEEEEECCCceeE--EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 213 GTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
+..++.|+..|.+...|..+.... .-....++|++++|+.+|..++.|-.+|.|.+||+..+...+.+..+..|..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456778888888888777664332 2233567999999999999999999999999999999888887776665543
No 372
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.17 E-value=0.054 Score=41.45 Aligned_cols=91 Identities=23% Similarity=0.335 Sum_probs=62.0
Q ss_pred CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC
Q 011224 338 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417 (490)
Q Consensus 338 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h 417 (490)
+.|+.||.|..||+|+- ...+.++... ..+.++.-...+ .++.+..+|+|-+|+- ...++.++..
T Consensus 16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~~----------~F~Y~l~NGTVGvY~~--~~RlWRiKSK 80 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGGG----------RFAYALANGTVGVYDR--SQRLWRIKSK 80 (111)
T ss_pred ceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCCC----------EEEEEecCCEEEEEeC--cceeeeeccC
Confidence 56899999999999974 4556666543 456666655544 5888999999999975 4556666644
Q ss_pred CCCEEEEEE-CCCC---CEEEEEeCCCcEEE
Q 011224 418 REPVYSLAF-SPTG---EYLASGSLDKSMHI 444 (490)
Q Consensus 418 ~~~v~~l~~-spdg---~~l~s~s~dg~i~i 444 (490)
.. ++++++ ..++ +-|++|=.+|.|-+
T Consensus 81 ~~-~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 81 NQ-VTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred CC-eEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 44 555544 3333 36788878887643
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.00 E-value=0.16 Score=52.17 Aligned_cols=191 Identities=15% Similarity=0.175 Sum_probs=101.8
Q ss_pred CCeEEEEEcCCCCEEEEEe------CCC--eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCe-EEEEEcc
Q 011224 202 KDVTTLDWNGEGTLLATGS------YDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT-AIVWDVK 272 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~------~dg--~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~-v~iwd~~ 272 (490)
..+...++||+|+.++..- .|. .+.+++..+.......+. ..+.-.|+|+|..|.+.+.... +++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~- 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD- 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc-
Confidence 4577889999999877655 244 444445444333223332 3677889999888877653212 222211
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE-
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI- 351 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i- 351 (490)
...+.+++..+..+.... ...+.|..+.|||||..++... +|.|.+
T Consensus 427 -----------------------------~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 427 -----------------------------PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred -----------------------------CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 112334444444333322 2345699999999999887665 467766
Q ss_pred --EecCCCce-e---eeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEEEeeC--CCCCE
Q 011224 352 --WNMKQDKY-V---HDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNG--HREPV 421 (490)
Q Consensus 352 --wd~~~~~~-~---~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~--h~~~v 421 (490)
-....+.. + ..+.. ....+..+.|.+++. |+.+..++...+|-+.- |.....+.+ ...++
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~----------L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v 543 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS----------LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPV 543 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEecCCE----------EEEEecCCCCceEEEecCCccccccCCCCccCce
Confidence 33333331 1 11211 223357788988874 33444444444554331 221111122 24567
Q ss_pred EEEEECCCCCEEEEEeCCC
Q 011224 422 YSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~dg 440 (490)
.+|+=+++ -|+....++
T Consensus 544 ~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 544 VAVAASPS--TVYVTDARA 560 (591)
T ss_pred EEEecCCc--eEEEEcCCc
Confidence 77777763 333444455
No 374
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.82 E-value=0.41 Score=44.29 Aligned_cols=225 Identities=15% Similarity=0.211 Sum_probs=115.3
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011224 153 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 232 (490)
Q Consensus 153 ~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~ 232 (490)
.+..|+.|..+| +.++++..... + ... .+...|..+...++-+.|++-+ |+.++++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~-------~------~~i-----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSK-------P------TRI-----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcc-------c------eeE-----eecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 578899999998 88888722110 0 000 0123388888888777666554 59999998653
Q ss_pred ceeEE---------------ecCCCCCEEEEE--ecCCCCEEEEEeCCCeEEEEEccCc-----ceeEeeeeeccCeEEE
Q 011224 233 DLKCT---------------LSKHKGPIFSLK--WNKKGDYLLTGSCDKTAIVWDVKTE-----EWKQQFEFHSGPTLDV 290 (490)
Q Consensus 233 ~~~~~---------------~~~h~~~V~~l~--~~~~~~~l~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~~~~~~ 290 (490)
-.... .......+...+ -.+.+...+.....++|.+|..... ...+.+.. ...+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence 11111 111223344433 1234444555556679998877653 22333332 2556777
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCC------------CCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~ 358 (490)
.|..+..++.. .+...+.++.+..+...+... ..++..+... ++.+|++- |..-.+.|. .|.
T Consensus 145 ~~~~~~i~v~~--~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~ 218 (275)
T PF00780_consen 145 AFLGNKICVGT--SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGE 218 (275)
T ss_pred EEeCCEEEEEe--CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCC
Confidence 77755444433 233556666654443332211 1233333433 45555543 222233333 333
Q ss_pred eee--eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC
Q 011224 359 YVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417 (490)
Q Consensus 359 ~~~--~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h 417 (490)
..+ .+.- ......+++... +|+..+ ++.|.||++.+++.++++...
T Consensus 219 ~~r~~~i~W-~~~p~~~~~~~p-----------yli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 219 PSRKSTIQW-SSAPQSVAYSSP-----------YLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred cCcccEEEc-CCchhEEEEECC-----------EEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 222 1111 112233333221 444444 466999999999998888743
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.80 E-value=0.31 Score=50.09 Aligned_cols=222 Identities=15% Similarity=0.244 Sum_probs=110.3
Q ss_pred CCCEEEEEeCCC------eEEEEECCCceeEEecC--CCCCEEEEEecCCCCEEEEEeCC------CeEEEEEccCccee
Q 011224 212 EGTLLATGSYDG------QARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWK 277 (490)
Q Consensus 212 ~~~~l~sg~~dg------~i~iw~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~ 277 (490)
.+.+++.||.++ .+..+|.....-..+.. +...-.+++.. ++...++|+.| .++..||+.+.+|.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 455667777763 56677765442222111 12223344443 34667788888 46788999998887
Q ss_pred Eeeeeecc-CeEEEEccCCceEEEEcCCCe-----EEEEEcCCCcc--eeEecCCCCCeeEEEEcCCCCEEEEEeCCC--
Q 011224 278 QQFEFHSG-PTLDVDWRNNVSFATSSTDNM-----IYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-- 347 (490)
Q Consensus 278 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~-----i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-- 347 (490)
..-..... .-..+...++..++.|+.|+. +-.||..+++- +..+.......-.+ .-+|.+.+.||.++
T Consensus 363 ~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSS 440 (571)
T ss_pred ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCc
Confidence 63222111 112333446677888887754 44455443321 11111111111122 23688888888665
Q ss_pred ----eEEEEecCCCceee--eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc-----EEEEeCCCCeE--EEEe
Q 011224 348 ----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-----VKLWDVELGKL--LYSL 414 (490)
Q Consensus 348 ----~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~-----i~iwd~~~~~~--~~~~ 414 (490)
++..||..++.... .+........ ++. -++ .+.+.|+.|+. |..||..+.+- +..+
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~---------~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNG---------KIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEE-ECC---------EEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 45678876654422 2211111111 111 111 35677777763 66677765432 2222
Q ss_pred eCCCCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcCC
Q 011224 415 NGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKE 449 (490)
Q Consensus 415 ~~h~~~v~~l~~spdg~~l~s~s~dg-----~i~iw~~~~ 449 (490)
......+..+.. ++...|.|+.|| +|..||..+
T Consensus 510 ~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 510 TSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ccccccccEEEE--CCEEEEEecccCccccceeEEcCCCC
Confidence 222222222222 456778888775 355555443
No 376
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.79 E-value=0.21 Score=45.52 Aligned_cols=143 Identities=15% Similarity=0.219 Sum_probs=84.0
Q ss_pred CeeEEEEcCCCCEEEEEe---CCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEE
Q 011224 327 EVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 403 (490)
.+.+++++++++.+|... ....+.++.. +.....+. ....+..-.|++++. +.+....+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~---------~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGW---------VWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCC---------EEEEEcCCCceEEE
Confidence 678899999999876655 2234555543 33222221 223566677888764 44555556666666
Q ss_pred e-CCCCeEE-EEee--CCCCCEEEEEECCCCCEEEEEe---CCCcEEEEEcC---CC---eEE---EEEec-CCCEEEEE
Q 011224 404 D-VELGKLL-YSLN--GHREPVYSLAFSPTGEYLASGS---LDKSMHIWSLK---EG---KIV---KTYTG-NGGIFEVC 466 (490)
Q Consensus 404 d-~~~~~~~-~~~~--~h~~~v~~l~~spdg~~l~s~s---~dg~i~iw~~~---~~---~~~---~~~~~-~~~v~~~~ 466 (490)
. ...+... ..+. .-...|+++.+||||..+|.-. .++.|.+=-+. .| .+. ..... ...+.+++
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence 3 2333221 1121 1112799999999998776544 35677776543 23 111 11111 34688999
Q ss_pred ECCCCCEEEEEECCC
Q 011224 467 WNKEGDKIAACFANH 481 (490)
Q Consensus 467 ~~~~g~~la~~~~d~ 481 (490)
|.+++.+++.+...+
T Consensus 173 W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 173 WSDDSTLVVLGRSAG 187 (253)
T ss_pred ecCCCEEEEEeCCCC
Confidence 999999888775544
No 377
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.023 Score=54.94 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=94.2
Q ss_pred EEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEEeeCC
Q 011224 340 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGH 417 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~h 417 (490)
+.++..-..++-.|+..|+.+.+...+.. |.-+.+.|+.........+.+ .|-.|..|.=||.+... .+....+|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~Tl--vGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTL--VGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccE--EeecCCceEEecccccCcceeeeeecc
Confidence 34555556788889999999988887765 677777887764333222222 46678889999987432 22222222
Q ss_pred C----CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE-EEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 418 R----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV-KTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 418 ~----~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~-~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
. ..-.|.+-..+| +||.||.+|.|++||. .+..- ..+++- .+|..+.-+.+|++|++.+. ..+-+.+.+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 1 223445544444 7999999999999997 44433 344553 46999999999998766553 466666653
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0071 Score=63.08 Aligned_cols=93 Identities=23% Similarity=0.285 Sum_probs=70.7
Q ss_pred EEEEEECCCcEEEEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec----CCCEEE
Q 011224 390 ILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFE 464 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~----~~~v~~ 464 (490)
.++.|+.-|.+-..|+... .....-..-.++|++++|+.+|.+++.|=.+|.|.+||...++.++.+.. +.++..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 5788888899988887642 11122222357899999999999999999999999999999998887754 335777
Q ss_pred EEECCCCCEEEEEECCCc
Q 011224 465 VCWNKEGDKIAACFANHT 482 (490)
Q Consensus 465 ~~~~~~g~~la~~~~d~~ 482 (490)
+-|..++..+.++...|.
T Consensus 181 v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEeCCCcEEEEccCCCc
Confidence 788888886767666664
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.70 E-value=0.21 Score=48.50 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=52.3
Q ss_pred EeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC--EEEEE-ECCC----------------CCE
Q 011224 413 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG--IFEVC-WNKE----------------GDK 473 (490)
Q Consensus 413 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~--v~~~~-~~~~----------------g~~ 473 (490)
.+......+.+|+.+|++++.|+...=|+|.++|+.++.+++.+.+... +.-+. ..+. ...
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 3444455689999999999888876669999999999998888876432 11111 1111 123
Q ss_pred E-EEEECCCcEEEEEee
Q 011224 474 I-AACFANHTVCVLDFR 489 (490)
Q Consensus 474 l-a~~~~d~~v~v~~~~ 489 (490)
| +.+-..|.|.||.+|
T Consensus 382 LvIyaprRg~lEvW~~~ 398 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMR 398 (415)
T ss_pred EEEEeccCCeEEEEecC
Confidence 3 345668889999886
No 380
>PHA02713 hypothetical protein; Provisional
Probab=96.70 E-value=0.19 Score=51.59 Aligned_cols=184 Identities=3% Similarity=0.071 Sum_probs=89.6
Q ss_pred CCCEEEEEeCC------CeEEEEEccCcceeEeeeeecc-CeEEEEccCCceEEEEcCCC-----eEEEEEcCCCcc--e
Q 011224 253 KGDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENRP--I 318 (490)
Q Consensus 253 ~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~--~ 318 (490)
++..++.||.+ .++..||+.+..|...-..... .-..+...++..++.|+.++ .+..|+..++.- +
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45556666643 3577899988877543211111 01122334556667666543 366677654321 1
Q ss_pred eEecCCCCCeeEEEEcCCCCEEEEEeCCC-----------------------eEEEEecCCCcee--eeeccccccEEEE
Q 011224 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDV-----------------------TAKIWNMKQDKYV--HDLREHSKEIYTI 373 (490)
Q Consensus 319 ~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-----------------------~i~iwd~~~~~~~--~~~~~~~~~i~~v 373 (490)
..+.........+. -+|++.+.||.++ .+..||..+.+.. ..+.........+
T Consensus 383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 11111111111222 2677778887653 3566776655432 1111100000011
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECC------CcEEEEeCCC-C--eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC--cE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFD------STVKLWDVEL-G--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SM 442 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~d------g~i~iwd~~~-~--~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg--~i 442 (490)
. -+ +. +.+.|+.+ ..+..||..+ . ..+..+.........+++ +|+..++||.++ ++
T Consensus 461 ~--~~--------~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 461 S--HK--------DD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred E--EC--------CE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeeh
Confidence 1 11 12 33445543 2366788775 2 333444433333333444 678889999888 67
Q ss_pred EEEEcCCCe
Q 011224 443 HIWSLKEGK 451 (490)
Q Consensus 443 ~iw~~~~~~ 451 (490)
..||..+.+
T Consensus 528 e~yd~~~~~ 536 (557)
T PHA02713 528 DTFNVYTYE 536 (557)
T ss_pred hhcCccccc
Confidence 777776543
No 381
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.66 E-value=0.47 Score=42.81 Aligned_cols=179 Identities=15% Similarity=0.223 Sum_probs=91.7
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCceeEEecCC-CCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc--ce
Q 011224 201 SKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKH-KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--EW 276 (490)
Q Consensus 201 ~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--~~ 276 (490)
...+..++|.|+ +.++++....+.|...+.++.....+.-. -+..-+|++..++.++++--.++.+.++++... ..
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 345999999997 45677777888998889888766554332 255788999888877777767899999988332 11
Q ss_pred ----eEeee--ee---ccCeEEEEccC-CceEEEEcCCCeEEEEEcCC---Cccee--E------ecCCCCCeeEEEEcC
Q 011224 277 ----KQQFE--FH---SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGE---NRPIK--T------FAGHQGEVNCVKWDP 335 (490)
Q Consensus 277 ----~~~~~--~~---~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~---~~~~~--~------~~~h~~~v~~v~~~~ 335 (490)
...+. .. ....-.+.|.. ...+..+-...-..++.+.. ...+. . .......+.+++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 11121 11 11233455532 23333333333333333221 11111 0 011234578899998
Q ss_pred CC-CEEEEEeCCCeEEEEecCCCceeeeecccc---------ccEEEEEEcCCCC
Q 011224 336 TG-SLLASCSDDVTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPTGS 380 (490)
Q Consensus 336 ~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~p~g~ 380 (490)
.. ++++....+..|.++| .+++.+..+.-.. ...-.|+|.++|.
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 64 5667777888899998 5566554432211 2456777777774
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.51 E-value=0.01 Score=37.75 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
...|..++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5543
No 383
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.50 E-value=1.4 Score=46.41 Aligned_cols=321 Identities=13% Similarity=0.167 Sum_probs=163.4
Q ss_pred ccceeEEEECCCC------CEEEEEECCCcEEEEe-cCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 142 TSEVCACAWSPAG------SLLASGSGDSTARIWT-IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 142 ~~~V~~~~~sp~~------~~l~sgs~D~~i~~Wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...|.|+.++|-| ++++.|..+..+.+-- +.+... .......+ ......|...+|-.|..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~-----------~~~~~l~~--~~iPRSIl~~~~e~d~~ 596 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL-----------ITHEQLSG--EIIPRSILLTTFEGDIH 596 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce-----------eeeeccCC--CccchheeeEEeeccce
Confidence 4679999999842 2678887666554433 222211 01111111 11234577778888899
Q ss_pred EEEEEeCCCeEEEEECC--CceeEEe---cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 215 LLATGSYDGQARIWSTN--GDLKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~--~~~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
+|+++..||.+..+... ....... .--+.|+.=-.|+..+..-+-|.+|+-..+|--+..-+...+.. ..+..
T Consensus 597 yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~--kev~~ 674 (1096)
T KOG1897|consen 597 YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL--KEVNH 674 (1096)
T ss_pred EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch--HHhhh
Confidence 99999999999877543 2221111 11234555556666555444444566666665332211111110 00111
Q ss_pred EE-ccC--CceEEEEcCCCeEEEEEcCCCc--ceeEecCCCCCeeEEEEcCCCCEEEEEeCC--------------CeEE
Q 011224 290 VD-WRN--NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD--------------VTAK 350 (490)
Q Consensus 290 ~~-~~~--~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--------------g~i~ 350 (490)
+. |.+ -...+.....+.+.+..+..-+ .+++..- ......+++.+...++++.+.- ..++
T Consensus 675 ~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~ 753 (1096)
T KOG1897|consen 675 MCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLR 753 (1096)
T ss_pred hcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEE
Confidence 11 111 1112233334445554443321 2222221 2234455665544444433321 1356
Q ss_pred EEecCCCceeeeeccc-c---ccEEEEEEcCCCCCCCCCCCcEEEEEEEC----------CCcEEEEeCCCCeEEEEeeC
Q 011224 351 IWNMKQDKYVHDLREH-S---KEIYTIRWSPTGSGTNNPNQQLILASASF----------DSTVKLWDVELGKLLYSLNG 416 (490)
Q Consensus 351 iwd~~~~~~~~~~~~~-~---~~i~~v~~~p~g~~~~~~~~~~~l~sgs~----------dg~i~iwd~~~~~~~~~~~~ 416 (490)
++|-++-..++..... . ..+.++.|..+.. .+++.|.. .|.|.+|....++.+..+..
T Consensus 754 vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~--------t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e 825 (1096)
T KOG1897|consen 754 VLDQNTFEVLSSHEFERNETALSIISCKFTDDPN--------TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE 825 (1096)
T ss_pred EecCCceeEEeeccccccceeeeeeeeeecCCCc--------eEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence 6776665544322211 1 1233444544321 24444432 46677776655333322221
Q ss_pred --CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE-ecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 417 --HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 417 --h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~-~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
-.+.+.++.- -+|++||. -...|++|++.+++.++.- .....+..+.....|+.+|+|..=+++.+.-+|
T Consensus 826 ~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 826 TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 2355666543 25777764 5678999999988655443 334568889999999999999777777776554
No 384
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.50 E-value=0.8 Score=43.49 Aligned_cols=139 Identities=11% Similarity=0.105 Sum_probs=84.9
Q ss_pred CCEEEEEeC---------C-CeEEEEECCCc-----eeE--EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc
Q 011224 213 GTLLATGSY---------D-GQARIWSTNGD-----LKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 213 ~~~l~sg~~---------d-g~i~iw~~~~~-----~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 275 (490)
..+|+.|.. . |.|.+++.... ... .-....++|++++-- +.+|+.+. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc
Confidence 467777644 2 88999987652 221 123457899999765 33455444 5899999998887
Q ss_pred -eeEeeeeec-cCeEEEEccCCceEEEEcCCCeEEEEEcCC-CcceeEecC--CCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 011224 276 -WKQQFEFHS-GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAK 350 (490)
Q Consensus 276 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~dg~i~ 350 (490)
+...-..+. ..+.++....+ .++.+.....+.++.... ...+..+.. ....++++.+-++++.++.+..+|.+.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 554433322 34556655555 555666556666654443 222322222 234578888886777999999999999
Q ss_pred EEecC
Q 011224 351 IWNMK 355 (490)
Q Consensus 351 iwd~~ 355 (490)
++...
T Consensus 198 ~l~~~ 202 (321)
T PF03178_consen 198 VLRYN 202 (321)
T ss_dssp EEEE-
T ss_pred EEEEC
Confidence 99875
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.50 E-value=0.01 Score=37.81 Aligned_cols=30 Identities=27% Similarity=0.624 Sum_probs=27.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 326 GEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
..|.+++|+|...+||.++.+|.|.+|.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 468999999999999999999999999983
No 386
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.48 E-value=0.21 Score=48.46 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=78.5
Q ss_pred CeeEEEEcCCCCEEEEEe-----------CCC-eEEEEecCC--Cce--eeeeccccccEEEEEEcCCCCCCCCCCCcEE
Q 011224 327 EVNCVKWDPTGSLLASCS-----------DDV-TAKIWNMKQ--DKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~ 390 (490)
....++|.++|+++++-. ..+ .|.+++-.. ++. ...+.........+++.+++ +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G----------l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG----------V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC----------E
Confidence 355788899988877653 223 666665432 221 12222222334667776665 2
Q ss_pred EEEEECCCcEEEEeCCC-------CeEEEE-eeC----CCCCEEEEEECCCCCEEEEEeCC-------------------
Q 011224 391 LASASFDSTVKLWDVEL-------GKLLYS-LNG----HREPVYSLAFSPTGEYLASGSLD------------------- 439 (490)
Q Consensus 391 l~sgs~dg~i~iwd~~~-------~~~~~~-~~~----h~~~v~~l~~spdg~~l~s~s~d------------------- 439 (490)
+++ +.....++.|... .+.+.. +.. +....+.++|.|||.+.++-+..
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 332 3333333444421 122222 222 12447889999999877654421
Q ss_pred CcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCC
Q 011224 440 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
|.|.-++..++++.....+....+.++|+|+|+++++-..++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 456666666555433333444578999999999887654333
No 387
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.46 E-value=0.13 Score=44.64 Aligned_cols=138 Identities=13% Similarity=0.223 Sum_probs=84.0
Q ss_pred EEEEcCCCCEEEEEeCC---------CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEE--ccC
Q 011224 206 TLDWNGEGTLLATGSYD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWD--VKT 273 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~d---------g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd--~~~ 273 (490)
.-..+|+|++++-...| |.++.|-...+...... .-+--.+|+|+.+.+.+ +.-+.+-+|..|| ..+
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~-~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN-CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeeh-hccCCccccccccCcEEEEEccCceEEeeeecCCCc
Confidence 33457899985433222 34555544333222211 11222567887766654 4556677787777 444
Q ss_pred cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEe
Q 011224 274 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd 353 (490)
+.... .-.+++++..++...+ .-..+++..+|++.+++-..++|...|
T Consensus 192 G~~sn---------------------------r~~i~dlrk~~~~e~~-----~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 192 GDLSN---------------------------RKVIFDLRKSQPFESL-----EPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccC---------------------------cceeEEeccCCCcCCC-----CCCcceEccCCcEEEEEecCcEEEEEC
Confidence 43211 1123444443332211 123455566899999999999999999
Q ss_pred cCCCceeeeeccccccEEEEEEc
Q 011224 354 MKQDKYVHDLREHSKEIYTIRWS 376 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~v~~~ 376 (490)
..+++.+.++.-....+++++|-
T Consensus 240 p~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEec
Confidence 99999999999889999999985
No 388
>PHA02713 hypothetical protein; Provisional
Probab=96.45 E-value=0.25 Score=50.81 Aligned_cols=209 Identities=9% Similarity=0.051 Sum_probs=96.0
Q ss_pred eEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEcCC------CeEEEEEcCCCcc--eeEecCCCCCeeEEEEcC
Q 011224 265 TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDP 335 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~ 335 (490)
.+..||+.+..|...-...... -..+...++..++.|+.+ ..+..++...+.- +..+.........+ .-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EE
Confidence 5677888887765422111110 112233355566666643 2466666655421 11111111111122 23
Q ss_pred CCCEEEEEeCCC-----eEEEEecCCCceee--eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC----------
Q 011224 336 TGSLLASCSDDV-----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS---------- 398 (490)
Q Consensus 336 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg---------- 398 (490)
+|++.+.||.++ ++..||..+..... .+.........+.. ++ .+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g---------~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ---------YIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC---------EEEEEeCCCccccccccccc
Confidence 678888888764 47788877654322 11111111111111 22 2444555442
Q ss_pred -------------cEEEEeCCCCe--EEEEeeCCCCCEEEEEECCCCCEEEEEeCC------CcEEEEEcCC-C--eEEE
Q 011224 399 -------------TVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLASGSLD------KSMHIWSLKE-G--KIVK 454 (490)
Q Consensus 399 -------------~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spdg~~l~s~s~d------g~i~iw~~~~-~--~~~~ 454 (490)
.+..||..+.+ .+..+.........++ -+|+..+.||.+ ..|..||..+ . ..+.
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 36667766542 1222211111111122 246666777754 2467898876 3 3333
Q ss_pred EEecCCCEEEEEECCCCCEEEEEECCC--cEEEEEee
Q 011224 455 TYTGNGGIFEVCWNKEGDKIAACFANH--TVCVLDFR 489 (490)
Q Consensus 455 ~~~~~~~v~~~~~~~~g~~la~~~~d~--~v~v~~~~ 489 (490)
.+.......+++ .-+|++.++|+.++ ++..||..
T Consensus 498 ~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 498 TTESRLSALHTI-LHDNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred ccCcccccceeE-EECCEEEEEeeecceeehhhcCcc
Confidence 332211111111 12678888888887 56666653
No 389
>PRK13684 Ycf48-like protein; Provisional
Probab=96.44 E-value=0.89 Score=43.38 Aligned_cols=148 Identities=15% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEE-EEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEE
Q 011224 325 QGEVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403 (490)
Q Consensus 325 ~~~v~~v~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 403 (490)
.+.+.++.+.|++.+++++. .|.+. .++-...............++++.+.|++. +++. +..|.+++=
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~---------~~~v-g~~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN---------LWML-ARGGQIRFN 240 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC---------EEEE-ecCCEEEEc
Confidence 45688999999987776654 45443 222211112222223345678888888775 3343 456766542
Q ss_pred eCCCCeEEEEeeC----CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe---c-CCCEEEEEECCCCCEEE
Q 011224 404 DVELGKLLYSLNG----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT---G-NGGIFEVCWNKEGDKIA 475 (490)
Q Consensus 404 d~~~~~~~~~~~~----h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~---~-~~~v~~~~~~~~g~~la 475 (490)
....+..-..... -...+.+++|.|++..+++| .+|.|. .....|+--.... . ....+.+.|..+++.+|
T Consensus 241 s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 241 DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred cCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 2333332211111 12357889999988866654 566554 3444444322211 1 12477888877776655
Q ss_pred EEECCCcEEEE
Q 011224 476 ACFANHTVCVL 486 (490)
Q Consensus 476 ~~~~d~~v~v~ 486 (490)
+ +..|.|-.+
T Consensus 319 ~-G~~G~il~~ 328 (334)
T PRK13684 319 L-GQRGVLLRY 328 (334)
T ss_pred E-CCCceEEEe
Confidence 4 445666554
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.39 E-value=1.2 Score=44.13 Aligned_cols=237 Identities=15% Similarity=0.178 Sum_probs=117.8
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----eEEEEECCCceeE--EecCCCCCEEEEEecCCCCEEEEEeCCC-----------e
Q 011224 204 VTTLDWNGEGTLLATG-SYDG----QARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDK-----------T 265 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg-~~dg----~i~iw~~~~~~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~-----------~ 265 (490)
+..+.+||+|++++.+ +..| .++++|+...... .+..- .-..+.|.++++.|+-...+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467889999998865 3334 5899998765332 12211 112399999988776554332 3
Q ss_pred EEEEEccCccee--EeeeeeccC--eEEEEccCCc--eEEEEc--CC-CeEEEEEcCCC----cceeEecCCCCCe-eEE
Q 011224 266 AIVWDVKTEEWK--QQFEFHSGP--TLDVDWRNNV--SFATSS--TD-NMIYVCKIGEN----RPIKTFAGHQGEV-NCV 331 (490)
Q Consensus 266 v~iwd~~~~~~~--~~~~~~~~~--~~~~~~~~~~--~~~~~~--~d-~~i~~~~~~~~----~~~~~~~~h~~~v-~~v 331 (490)
|+.|.+.+..-. ..|.....+ ...+....+. .++.+. .+ ..+++.++... .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 778887665432 334333333 3344443332 233332 23 45777777664 2223333232223 333
Q ss_pred EEcCCCCEEEEEeC---CCeEEEEecCCCce---eeeeccccc--cEEEEEEcCCCCCCCCCCCcEEEEEEECCC--cEE
Q 011224 332 KWDPTGSLLASCSD---DVTAKIWNMKQDKY---VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDS--TVK 401 (490)
Q Consensus 332 ~~~~~~~~l~s~~~---dg~i~iwd~~~~~~---~~~~~~~~~--~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg--~i~ 401 (490)
... .+.+++.... .+.|.-.++..... ...+..+.. .+..+.. .+. .++++...++ .|+
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~--------~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKD--------YLVLSYRENGSSRLR 352 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETT--------EEEEEEEETTEEEEE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECC--------EEEEEEEECCccEEE
Confidence 333 3444443322 34555556655432 123333333 2333332 221 3555555555 478
Q ss_pred EEeCCCCeEEEEeeC-CCCCEEEEEECCCCCEE-E-EEeC--CCcEEEEEcCCCeEE
Q 011224 402 LWDVELGKLLYSLNG-HREPVYSLAFSPTGEYL-A-SGSL--DKSMHIWSLKEGKIV 453 (490)
Q Consensus 402 iwd~~~~~~~~~~~~-h~~~v~~l~~spdg~~l-~-s~s~--dg~i~iw~~~~~~~~ 453 (490)
++++..+.....+.. -.+.|..+...+++..+ + ..|. -++|..||+.++++.
T Consensus 353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 888884444444432 23446677666666533 2 2333 367888888888753
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.29 E-value=0.0076 Score=51.92 Aligned_cols=100 Identities=10% Similarity=0.082 Sum_probs=62.8
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEE-eeCCCCCE-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC--CEEEE
Q 011224 390 ILASASFDSTVKLWDVELGKLLYS-LNGHREPV-YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG--GIFEV 465 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v-~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~--~v~~~ 465 (490)
-++.|+.+|.|.+|+...--.... +..-..+| +.|.--.++.+..+++.||.|+.|++.-++.+.....+. .+..+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ 151 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEEL 151 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCccee
Confidence 377899999999998762111111 11111222 223333455688899999999999998888766544332 34444
Q ss_pred EECCCCCEEEEE--ECCCcEEEEEee
Q 011224 466 CWNKEGDKIAAC--FANHTVCVLDFR 489 (490)
Q Consensus 466 ~~~~~g~~la~~--~~d~~v~v~~~~ 489 (490)
.-+..+..|+.+ +.|..+..|++.
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchh
Confidence 455556667766 777788888763
No 392
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.28 E-value=1.6 Score=46.37 Aligned_cols=201 Identities=15% Similarity=0.237 Sum_probs=109.0
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeEeeeeeccC--------eEEEEc-----------------cCCceEEEEcCCCeEE
Q 011224 254 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP--------TLDVDW-----------------RNNVSFATSSTDNMIY 308 (490)
Q Consensus 254 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~--------~~~~~~-----------------~~~~~~~~~~~d~~i~ 308 (490)
+..++.++.++.|.-.|..+++.+-.+...... ...+.+ ....+++.++.|+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777778888888777765544332210 000111 1123566777899999
Q ss_pred EEEcCCCcceeEecCCCCCee-------------EEEEcC--CCCEEEEEeC----------CCeEEEEecCCCceeeee
Q 011224 309 VCKIGENRPIKTFAGHQGEVN-------------CVKWDP--TGSLLASCSD----------DVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~h~~~v~-------------~v~~~~--~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~ 363 (490)
-.|..+++.+..|.. .+.|. .+.-.| .+..++.|+. +|.|+-+|.++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999988888766532 22110 011111 1334555542 688999999999887654
Q ss_pred ccc---------cccEEE---------EEEc--------CCCCCCCC--CCCcEEEEEEECCCcEEEEeCCCCeEEEEee
Q 011224 364 REH---------SKEIYT---------IRWS--------PTGSGTNN--PNQQLILASASFDSTVKLWDVELGKLLYSLN 415 (490)
Q Consensus 364 ~~~---------~~~i~~---------v~~~--------p~g~~~~~--~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 415 (490)
..- .+..+. .++. |.|..... .... ........+.|.-.|.++|+..+.+.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r-~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDR-TPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCcc-ccCcccccceEEEEeCCCCceEEEec
Confidence 321 011110 1111 11111000 0000 00001234567778889999988775
Q ss_pred CCCCCEEE---------EEECC-CCC---EEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 416 GHREPVYS---------LAFSP-TGE---YLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 416 ~h~~~v~~---------l~~sp-dg~---~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
.....+++ +.+.- +|+ .++.++.+|.+.++|.++|+.+...
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 41111111 12222 563 7889999999999999999987653
No 393
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.25 E-value=0.84 Score=41.15 Aligned_cols=179 Identities=14% Similarity=0.145 Sum_probs=108.9
Q ss_pred EEEEEecCCCCEEEEEeCCC--eEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe
Q 011224 245 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 321 (490)
Q Consensus 245 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 321 (490)
..++.|..++..+-|.+.-| .|+.+|+.+++..........- --.+...++..+...=.++..+++|..+-+.+..|
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 45788877777778887776 6899999999877655433211 11233335555666667778889999888877776
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc--c---ccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--S---KEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 322 ~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~---~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
.- .++=+.++ .+++.|+.......+.++|..+.+....+... . ..+.-+.|. +| .+.|-.-.
T Consensus 127 ~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G---------~IyANVW~ 193 (264)
T PF05096_consen 127 PY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG---------KIYANVWQ 193 (264)
T ss_dssp E--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT---------EEEEEETT
T ss_pred ec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC---------EEEEEeCC
Confidence 53 34556666 35666666666778999998877666554332 1 123445553 33 24455555
Q ss_pred CCcEEEEeCCCCeEEEEeeC------------C---CCCEEEEEECCCCC-EEEEE
Q 011224 397 DSTVKLWDVELGKLLYSLNG------------H---REPVYSLAFSPTGE-YLASG 436 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~------------h---~~~v~~l~~spdg~-~l~s~ 436 (490)
...|...|..+|+.+..+.- + ....+.|||.|... +++||
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66777889999988776531 1 24578999988765 45555
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.25 E-value=0.0017 Score=66.07 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=72.1
Q ss_pred eeccccccceeEEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc---C
Q 011224 136 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN---G 211 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s---~ 211 (490)
..++|-.++|-.++|-. +...++ -.-|.+.+|++.- ..+..+.. +. -+....+ ...+.-+.|. +
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~--l~G~iq~~----l~-v~~~~p~---gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDV--LQGEIQPQ----LE-VTPITPY---GSDPQLVSWCPIAV 193 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHh--hccccccc----eE-EeecCcC---CCCcceeeeccccc
Confidence 46778888898888843 222222 2235688998753 11111111 11 1111111 2223444444 4
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEE-----------ecCCCCEEEEEeCCCeEEEEEc
Q 011224 212 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-----------WNKKGDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~-----------~~~~~~~l~s~s~D~~v~iwd~ 271 (490)
+.-++..+-.++.+++...+......+.+|...++.++ .+|||..|+.++.||.++.|.+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 66777788888999887665544444555765544443 4788888888888888888864
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.04 E-value=1.3 Score=41.30 Aligned_cols=268 Identities=14% Similarity=0.181 Sum_probs=118.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEe---cCC---CCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL---SKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~---~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 274 (490)
..++..++|..+..-+++|. .+.| +-..++...... ... .-...+|.|... ..+++ +..+.|. .....+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~ll-~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGLLL-HTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTEEE-EESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCceEE-EecCCC
Confidence 45789999996666666654 4543 222333222111 111 112456777543 34444 4445433 322333
Q ss_pred -ceeEeeee--eccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 275 -EWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 275 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
.+...... ..+....+...........+..+.|+.-.-....=.....+-.+.+..+.-+++|+++++++.-..+.-
T Consensus 91 ~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s 170 (302)
T PF14870_consen 91 KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSS 170 (302)
T ss_dssp SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEE
T ss_pred CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEE
Confidence 23322110 111222222222223333334454443322111111222344567888889999999988877666677
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-CCeEEEE----eeCCCCCEEEEEE
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYS----LNGHREPVYSLAF 426 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~----~~~h~~~v~~l~~ 426 (490)
||--.......-+.....|.++.|.|++. +.+ ....|.|++=+.. ....... +..-.-.+.+++|
T Consensus 171 ~~~G~~~w~~~~r~~~~riq~~gf~~~~~---------lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 171 WDPGQTTWQPHNRNSSRRIQSMGFSPDGN---------LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp E-TT-SS-EEEE--SSS-EEEEEE-TTS----------EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred ecCCCccceEEccCccceehhceecCCCC---------EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 87543323333344567899999999974 323 3478888887722 2221111 1112234899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec----CCCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~----~~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
.+++...|+|+.. . .+.....|+-=+.-.. ...++.+.|.+..+-+|. +.+|.|--|
T Consensus 241 ~~~~~~wa~gg~G-~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 241 RPPNEIWAVGGSG-T-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp SSSS-EEEEESTT---EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCEEEEeCCc-c-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 9998888877644 3 3344455543222211 335788888766555544 456665433
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.99 E-value=0.58 Score=48.09 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=92.8
Q ss_pred CCEEEEEeCC------CeEEEEEccCcceeEeeeeec-cCeEEEEccCCceEEEEcCC-C-----eEEEEEcCCCccee-
Q 011224 254 GDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSSTD-N-----MIYVCKIGENRPIK- 319 (490)
Q Consensus 254 ~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d-~-----~i~~~~~~~~~~~~- 319 (490)
+..++.|+.+ .++..+|+.++.|........ ....++...++..+++|+.+ + .+..||...+.=..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~ 364 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV 364 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence 3445566665 468889998887765433221 12334445567778888877 2 45566655443111
Q ss_pred -EecCCCCCeeEEEEcCCCCEEEEEeCCCe-----EEEEecCCCcee--eeeccccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 320 -TFAGHQGEVNCVKWDPTGSLLASCSDDVT-----AKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 320 -~~~~h~~~v~~v~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~--~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
.+.......-... -+|.+.|.||.||. +..||..+.+.- ..+.......-.+.+ .| .+.
T Consensus 365 a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g---------~iY 431 (571)
T KOG4441|consen 365 APMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GG---------KLY 431 (571)
T ss_pred CCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CC---------EEE
Confidence 1111111111111 26888999999974 677887665432 211111111111111 22 245
Q ss_pred EEEECCC------cEEEEeCCCCe--EEEEeeCCCCCEEEEEECCCCCEEEEEeCCCc-----EEEEEcCCCe
Q 011224 392 ASASFDS------TVKLWDVELGK--LLYSLNGHREPVYSLAFSPTGEYLASGSLDKS-----MHIWSLKEGK 451 (490)
Q Consensus 392 ~sgs~dg------~i~iwd~~~~~--~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~-----i~iw~~~~~~ 451 (490)
+.|+.++ ++..||..+++ .+..+..-+....... -++.+.+.||.|+. |..||..+.+
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 5666554 35667766543 2222221111112222 25677788887763 7778876644
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.97 E-value=0.31 Score=48.29 Aligned_cols=149 Identities=17% Similarity=0.329 Sum_probs=88.3
Q ss_pred CCeeEEEEcCCCCEEEEEe---CCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 326 GEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
.++..++|. ||+.++-.. ..|.+++=|. +.+ +.-..|+.+.|.|-+.... . .|++..+...|.+
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~----p-aLLAVQHkkhVtV 86 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADT----P-ALLAVQHKKHVTV 86 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCC----C-ceEEEeccceEEE
Confidence 468889997 666544322 2333333221 122 2234688999999865321 1 3445567789999
Q ss_pred EeCC-----CCeEEEEeeCCC---CCE--EEEEECCCCCEEEEEeCCCcEEEEEcCC--CeEEEEEecCCCEEEEEECCC
Q 011224 403 WDVE-----LGKLLYSLNGHR---EPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGGIFEVCWNKE 470 (490)
Q Consensus 403 wd~~-----~~~~~~~~~~h~---~~v--~~l~~spdg~~l~s~s~dg~i~iw~~~~--~~~~~~~~~~~~v~~~~~~~~ 470 (490)
|-+. .++.+.....+- -+| ..+.|+|....|+.-.....-.+++++. .++...+.+.+-|.+.+|.+|
T Consensus 87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKD 166 (671)
T ss_pred EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCc
Confidence 9864 233333322211 122 3568999999887765554445566542 234444566777999999999
Q ss_pred CCEEEEEECC-CcEEEEE
Q 011224 471 GDKIAACFAN-HTVCVLD 487 (490)
Q Consensus 471 g~~la~~~~d-~~v~v~~ 487 (490)
|++|+.+-.+ -.-++||
T Consensus 167 G~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred CCEEEEEeCCeEEEEEec
Confidence 9988877544 2335554
No 398
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.81 E-value=0.32 Score=49.70 Aligned_cols=92 Identities=18% Similarity=0.370 Sum_probs=63.6
Q ss_pred EECCCcEEEEeCCCCeEEEEee-CCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEEcCC---------CeEEEEEe----
Q 011224 394 ASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFS--PTGEYLASGSLDKSMHIWSLKE---------GKIVKTYT---- 457 (490)
Q Consensus 394 gs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~s--pdg~~l~s~s~dg~i~iw~~~~---------~~~~~~~~---- 457 (490)
-+....+.|||.+.+..-++-. ...+.|.++.|. |+|+.+++.|..+.|.+|.-.. ...++.+.
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~ 126 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSH 126 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecC
Confidence 3344579999999887554432 346789999885 7899999999999999996421 12233321
Q ss_pred cCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 458 GNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 458 ~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
....|.+.+|-++|..+++++ ..+.|++
T Consensus 127 T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 127 TPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred CCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 124688999999997766654 2576664
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.52 E-value=1.8 Score=39.10 Aligned_cols=181 Identities=13% Similarity=0.186 Sum_probs=95.3
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEECCCc--eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEE--------Ecc
Q 011224 208 DWNGEGTLLATGSYD-----GQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW--------DVK 272 (490)
Q Consensus 208 ~~s~~~~~l~sg~~d-----g~i~iw~~~~~--~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iw--------d~~ 272 (490)
.||+||.+|+..-.| |.|=|||.... ..-.+..|.-.-..+.|.++|..++.+. |-|... |+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence 589999999876544 78899997643 3346677777778899999999888764 333332 223
Q ss_pred CcceeEeeee-eccCeEEE-Ecc-----CCceEEEEcCCCeEEE-EEcCC--------------CcceeEec-------C
Q 011224 273 TEEWKQQFEF-HSGPTLDV-DWR-----NNVSFATSSTDNMIYV-CKIGE--------------NRPIKTFA-------G 323 (490)
Q Consensus 273 ~~~~~~~~~~-~~~~~~~~-~~~-----~~~~~~~~~~d~~i~~-~~~~~--------------~~~~~~~~-------~ 323 (490)
+++..-.+-. ..+..+.- ... ...+-+.-+.||+|+. +.... ++++..+. .
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~ 277 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAA 277 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHH
Confidence 3322111111 11111000 000 1112233344555433 22111 11221111 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 324 HQGEVNCVKWDPTGSLLASCSDD-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 324 h~~~v~~v~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
...+|-+++.+.+..+++..+-. +...+||..++..+..-... .+..++-...| ++..+.+|.|.+
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~~~~g-----------f~vssg~G~~~~ 344 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAAAKGG-----------FAVSSGQGRIIF 344 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccceeccCc-----------eEEecCCceEEe
Confidence 23457788888777777666554 46789999999876543211 11222222222 455667788877
Q ss_pred E
Q 011224 403 W 403 (490)
Q Consensus 403 w 403 (490)
+
T Consensus 345 ~ 345 (366)
T COG3490 345 Y 345 (366)
T ss_pred c
Confidence 6
No 400
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.29 E-value=2.1 Score=38.61 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=99.2
Q ss_pred eeEEEECCCCCEEEEEECCC--cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 145 VCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 145 V~~~~~sp~~~~l~sgs~D~--~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
...+.|..+|.++-|.|.-| .|+.+|+.+++... ...+....- --.++... +++..-.-.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~-----------~~~l~~~~F-----gEGit~~~-d~l~qLTWk~ 109 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ-----------SVPLPPRYF-----GEGITILG-DKLYQLTWKE 109 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE-----------EEE-TTT-------EEEEEEET-TEEEEEESSS
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE-----------EEECCcccc-----ceeEEEEC-CEEEEEEecC
Confidence 45688877888888888655 79999998875321 111111100 01122222 2334444567
Q ss_pred CeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec-----cCeEEEEccCCc
Q 011224 223 GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-----GPTLDVDWRNNV 296 (490)
Q Consensus 223 g~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 296 (490)
+...+||...- ...++. ..+.=++|+ .++..|+.......+.++|+.+.+....+.... .....+.|.+..
T Consensus 110 ~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~ 186 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGK 186 (264)
T ss_dssp SEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTE
T ss_pred CeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCE
Confidence 89999998753 333332 345668887 456677776667789999998877666554322 123455565555
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEec------------CC---CCCeeEEEEcCCCCEEEEEe
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFA------------GH---QGEVNCVKWDPTGSLLASCS 344 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~------------~h---~~~v~~v~~~~~~~~l~s~~ 344 (490)
.++-.=....|...|..++..+..+. .+ ..-.+.+|+.|....|...+
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 55555445556666666665544331 01 34578999998776554443
No 401
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.15 E-value=0.016 Score=59.38 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=64.6
Q ss_pred EcCCCCEEEEEeCCCeEEEEecC-----CCceeeeeccccc-cEEEEEEcCCCCC-CCCCCCcEEEEEEECCCcEEEEeC
Q 011224 333 WDPTGSLLASCSDDVTAKIWNMK-----QDKYVHDLREHSK-EIYTIRWSPTGSG-TNNPNQQLILASASFDSTVKLWDV 405 (490)
Q Consensus 333 ~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~-~i~~v~~~p~g~~-~~~~~~~~~l~sgs~dg~i~iwd~ 405 (490)
.+|||+.||+.+.||.+++|.+. ..++++..+.|.+ +-.|..+..+... ...+...+++-+...+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 79999999999999999988753 3345556666663 2222222221111 111112233444445667999998
Q ss_pred CCCeEEEEeeCCCCCEEEEEECCCCC------------EEEEEeCCCcEEEEEcC
Q 011224 406 ELGKLLYSLNGHREPVYSLAFSPTGE------------YLASGSLDKSMHIWSLK 448 (490)
Q Consensus 406 ~~~~~~~~~~~h~~~v~~l~~spdg~------------~l~s~s~dg~i~iw~~~ 448 (490)
...+|+..+ .-..|..|. -++|. .+++-+-++.|++|.-.
T Consensus 323 a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 777766221 223344444 33332 23456778899999644
No 402
>PHA03098 kelch-like protein; Provisional
Probab=94.83 E-value=1.2 Score=45.66 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=43.2
Q ss_pred eEEEEEccCcceeEeeeeecc-CeEEEEccCCceEEEEcCC-----CeEEEEEcCCCccee--EecCCCCCeeEEEEcCC
Q 011224 265 TAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPT 336 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~ 336 (490)
.+..||+.+..|...-..... .-..+...++..++.|+.+ ..+..|+..++.-.. .+...... .+++ .-+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EEC
Confidence 567788888777542211100 0112222345566666544 235556654432111 11101111 1122 235
Q ss_pred CCEEEEEeCC------CeEEEEecCCCce
Q 011224 337 GSLLASCSDD------VTAKIWNMKQDKY 359 (490)
Q Consensus 337 ~~~l~s~~~d------g~i~iwd~~~~~~ 359 (490)
+++++.||.+ ..+..||..+.+.
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 6777777732 3577888776543
No 403
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.69 Score=49.39 Aligned_cols=140 Identities=13% Similarity=0.086 Sum_probs=84.9
Q ss_pred CeeEEEEcCCCCEEE--EEeCCCeEEEEecCCCce--------ee---eeccccccEEEEEEcCCCCCCCCCCCcEEEEE
Q 011224 327 EVNCVKWDPTGSLLA--SCSDDVTAKIWNMKQDKY--------VH---DLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 393 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~--s~~~dg~i~iwd~~~~~~--------~~---~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~s 393 (490)
.+..+.+.+|+...+ ..+.+-.|..||+++-.. +. ..........++.|.|.-. ...+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--------~n~av 173 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--------LNSAV 173 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--------chhhh
Confidence 344555566765543 333434678889864321 11 1111122334556666532 34567
Q ss_pred EECCCcEEEEeCCCCeE-EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-----CCCEEEEEE
Q 011224 394 ASFDSTVKLWDVELGKL-LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCW 467 (490)
Q Consensus 394 gs~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-----~~~v~~~~~ 467 (490)
+..|+.|++..+..... +..+ .....+++++|+|-|+-|+.|-..|++.-|... +.+...+.+ +..|.+++|
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 78899998887653222 1222 244568999999999999999999999998764 333333322 457999999
Q ss_pred CCCCCEEEE
Q 011224 468 NKEGDKIAA 476 (490)
Q Consensus 468 ~~~g~~la~ 476 (490)
-....+|+.
T Consensus 252 l~t~eflvv 260 (1405)
T KOG3630|consen 252 LSTQEFLVV 260 (1405)
T ss_pred ecceeEEEE
Confidence 877666554
No 404
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.36 E-value=0.17 Score=31.23 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCEEEEEECCCC---CEEEEEeCCCcEEEEEcCC
Q 011224 419 EPVYSLAFSPTG---EYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 419 ~~v~~l~~spdg---~~l~s~s~dg~i~iw~~~~ 449 (490)
+.|.++.|||.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 5899999999999999985
No 405
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.30 E-value=4.6 Score=37.68 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHI 444 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~i 444 (490)
.....+..+.-+++|. ++++++.-....-||--...=...-..-...|.++.|+|++.+.+.+ ..|.|++
T Consensus 142 ~~~gs~~~~~r~~dG~---------~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSDGR---------YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TTS----------EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred CCcceeEeEEECCCCc---------EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEE
Confidence 3446677788788885 66666544445567654211111112245789999999998876654 7788887
Q ss_pred EEc-CCCeEE-EE-Ee---cCCCEEEEEECCCCCEEEEEECCCcEE
Q 011224 445 WSL-KEGKIV-KT-YT---GNGGIFEVCWNKEGDKIAACFANHTVC 484 (490)
Q Consensus 445 w~~-~~~~~~-~~-~~---~~~~v~~~~~~~~g~~la~~~~d~~v~ 484 (490)
=+. ..+..- .. .. ..-.+.+++|.+++...|+|+ +|++.
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL 256 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE
Confidence 762 211111 11 11 122489999999987777655 44443
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.85 E-value=4.2 Score=39.43 Aligned_cols=102 Identities=15% Similarity=0.249 Sum_probs=53.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCC-----c---eeeeecc----ccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----K---YVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~-----~---~~~~~~~----~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
..+.+++.++| ++++ +.....++.|.... + .+..+.. +......++|.|+|. +|+..|
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~--------LYv~~G 142 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW--------LYFNHG 142 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC--------EEEecc
Confidence 45678888888 5544 34433334444321 1 1112222 123456788888875 455444
Q ss_pred EC------------------CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 395 SF------------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 395 s~------------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
+. .|.|.-++...++......++ ...+.++|+|+|.++++-..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 32 134445555544432222333 334789999999988764433
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=0.32 Score=51.74 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=90.9
Q ss_pred cceeEEEECCCCCE--EEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC-CEEEEE
Q 011224 143 SEVCACAWSPAGSL--LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATG 219 (490)
Q Consensus 143 ~~V~~~~~sp~~~~--l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~-~~l~sg 219 (490)
-+|..+..++|++. ++..+.+-.|..||+..-.........++... ........-+.++.|+|.- ...+..
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s------~ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNS------ATSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccc------cchhccccccccccccCCccchhhhh
Confidence 35566666778664 44455656788999865432211111111100 0011223446788898853 345667
Q ss_pred eCCCeEEEEECCCce-eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee---e-eccCeEEEEccC
Q 011224 220 SYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---F-HSGPTLDVDWRN 294 (490)
Q Consensus 220 ~~dg~i~iw~~~~~~-~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~-~~~~~~~~~~~~ 294 (490)
..|+.|++..+.... .+.-...+..+++++|+|.|.+++.|-..|++..|-..-. .+..+. . ....+.++.|..
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEec
Confidence 788999888764321 1111234567899999999999999999999999976432 222111 1 134578888977
Q ss_pred CceEEEE
Q 011224 295 NVSFATS 301 (490)
Q Consensus 295 ~~~~~~~ 301 (490)
...|+..
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 7666544
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.79 E-value=11 Score=40.04 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=27.7
Q ss_pred CCCCeeEEEEcCC---CCEEEEEeCCCeEEEEecCC
Q 011224 324 HQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 324 h~~~v~~v~~~~~---~~~l~s~~~dg~i~iwd~~~ 356 (490)
+...|..+.|||. +..|+.-..|+++|+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 3457889999997 47888899999999999864
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.78 E-value=4.4 Score=35.61 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=77.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc--------ccEEEEEEcCCCCCCCCCCCcEEEEEEECC
Q 011224 326 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS--------KEIYTIRWSPTGSGTNNPNQQLILASASFD 397 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d 397 (490)
...+.-..+|+|++++-.-.|-.- ++....+.+..-+.+|. .--..++|+.+ ++.+...-+.+
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d--------~K~fY~iDsln 179 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD--------AKKFYYIDSLN 179 (310)
T ss_pred cccccCccCCCCceeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc--------CcEEEEEccCc
Confidence 456667789999985432222111 11111222222222222 11234555533 23455667777
Q ss_pred CcEEEEe--CCCC-----eEEEEeeCC---CC-CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEE
Q 011224 398 STVKLWD--VELG-----KLLYSLNGH---RE-PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEV 465 (490)
Q Consensus 398 g~i~iwd--~~~~-----~~~~~~~~h---~~-~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~ 465 (490)
-.|.-|| +.+| +.++.+... .. .--.++..-+|.+.++.=..++|...|..+|+++..+.-. ..++++
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 8888887 4444 334444321 01 1123444567777777777889999999999999888654 459999
Q ss_pred EECCC
Q 011224 466 CWNKE 470 (490)
Q Consensus 466 ~~~~~ 470 (490)
||--.
T Consensus 260 cFgGk 264 (310)
T KOG4499|consen 260 CFGGK 264 (310)
T ss_pred EecCC
Confidence 99665
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.73 E-value=11 Score=40.17 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=85.9
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeeeccccccEE-EEE--EcCCCC--CCCCC--CCcEEEEEEEC----------CCc
Q 011224 337 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-TIR--WSPTGS--GTNNP--NQQLILASASF----------DST 399 (490)
Q Consensus 337 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~v~--~~p~g~--~~~~~--~~~~~l~sgs~----------dg~ 399 (490)
+..|+.++.|+.+.-.|.++++.+..+... +.+. ... -.+.+. ....| ... .++.|+. +|.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcE
Confidence 347778889999999999999888665321 1110 000 000000 00000 011 3444432 688
Q ss_pred EEEEeCCCCeEEEEeeCC---------C--------CCE-EEEEECCCCCEEEEEe------------------CCCcEE
Q 011224 400 VKLWDVELGKLLYSLNGH---------R--------EPV-YSLAFSPTGEYLASGS------------------LDKSMH 443 (490)
Q Consensus 400 i~iwd~~~~~~~~~~~~h---------~--------~~v-~~l~~spdg~~l~s~s------------------~dg~i~ 443 (490)
|+-+|..+|+.++.+..- . ..+ ...++.|....+..+. ..+.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999999886421 0 011 2234555443333211 235677
Q ss_pred EEEcCCCeEEEEEec-CCCEEE---------EEECC-CCC---EEEEEECCCcEEEEEee
Q 011224 444 IWSLKEGKIVKTYTG-NGGIFE---------VCWNK-EGD---KIAACFANHTVCVLDFR 489 (490)
Q Consensus 444 iw~~~~~~~~~~~~~-~~~v~~---------~~~~~-~g~---~la~~~~d~~v~v~~~~ 489 (490)
-.|+.+|++...++. +..+++ +.+.. +|+ .++.+..+|.+.++|-+
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~ 477 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR 477 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence 888999998877754 222221 22333 664 78888999999999864
No 411
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.63 E-value=6.9 Score=37.33 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=44.5
Q ss_pred EEEeeCCCCCEEEEEECC-------CCCEEEEEeCCCcEEEEEcCCCe-EE--EEEe-cCC-CEEEEEECCCCCEEEEEE
Q 011224 411 LYSLNGHREPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGK-IV--KTYT-GNG-GIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 411 ~~~~~~h~~~v~~l~~sp-------dg~~l~s~s~dg~i~iw~~~~~~-~~--~~~~-~~~-~v~~~~~~~~g~~la~~~ 478 (490)
+..+..| ..++.+.|-+ .|.+|++.-..+.|....+..+. +. ..+. ... .+.++++.|||.+.++-.
T Consensus 246 ~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 246 VFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred ceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 3344444 4567777754 34466665556788888887543 22 2222 223 689999999999998888
Q ss_pred CCCcEE
Q 011224 479 ANHTVC 484 (490)
Q Consensus 479 ~d~~v~ 484 (490)
.+|.|.
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 888874
No 412
>PHA03098 kelch-like protein; Provisional
Probab=93.28 E-value=4.7 Score=41.44 Aligned_cols=144 Identities=10% Similarity=0.087 Sum_probs=66.6
Q ss_pred CCCEEEEEeCCC------eEEEEECCCceeEEecCC---CCCEEEEEecCCCCEEEEEeCC-----CeEEEEEccCccee
Q 011224 212 EGTLLATGSYDG------QARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWK 277 (490)
Q Consensus 212 ~~~~l~sg~~dg------~i~iw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~ 277 (490)
++.+++.||.++ .+..||.....-..+... ......+. -++..++.||.+ ..+..||+.+..|.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456666776543 456666554332222211 11111122 245566667654 35778999888776
Q ss_pred EeeeeeccC-eEEEEccCCceEEEEcCC------CeEEEEEcCCCcce--eEecCCCCCeeEEEEcCCCCEEEEEeCCC-
Q 011224 278 QQFEFHSGP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDDV- 347 (490)
Q Consensus 278 ~~~~~~~~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~~~dg- 347 (490)
..-...... -.+....++..++.|+.. +.+..|+..++.-. ..+....... ++. ..++.+++.|+.++
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCC
Confidence 432211110 111222345555655521 34667776543211 1111011111 222 23566777776432
Q ss_pred -------eEEEEecCCCce
Q 011224 348 -------TAKIWNMKQDKY 359 (490)
Q Consensus 348 -------~i~iwd~~~~~~ 359 (490)
.+.+||..+.+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCCcccceEEEecCCCCce
Confidence 377888776544
No 413
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.24 E-value=3.9 Score=37.29 Aligned_cols=114 Identities=10% Similarity=0.280 Sum_probs=77.6
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee--CCCCCEEEEEECCCCCEEEEEeCCCcE
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
+....+.++.|+|+.. .|++-.....--+|=...|..+.++. +..+ -..|.|..+++|.++--.++.+
T Consensus 83 g~~~nvS~LTynp~~r---------tLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 83 GETANVSSLTYNPDTR---------TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccceeeCCCcc---------eEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceE
Confidence 3344588999999876 34444445555566556688877754 3222 3568888899999998889999
Q ss_pred EEEEcCCCeEE----------EEEec-CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 443 HIWSLKEGKIV----------KTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 443 ~iw~~~~~~~~----------~~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.++.+.....+ ....+ +.+.-.++|.|....|..+-...=+.||-+
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 99988755221 11112 556789999999988888766666666544
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.16 E-value=0.61 Score=41.34 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=48.5
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE---------------ecCCCEEEEEECCCCCEEEEEECCCcEEEEEeeC
Q 011224 426 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTY---------------TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 426 ~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~---------------~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
+..++.+|++-+.+|.+++||+.+++.+... .....|..+..+..|.-|++- .||..++|+..+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 4457889999999999999999998864332 123458889999999876654 467889987653
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=93.13 E-value=6.8 Score=39.60 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=50.2
Q ss_pred CCEEEEEeCC-----CeEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEcCC--CeEEEEEcCCCc--ceeEecC
Q 011224 254 GDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD--NMIYVCKIGENR--PIKTFAG 323 (490)
Q Consensus 254 ~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~--~~~~~~~ 323 (490)
+..++.|+.+ .++..||+.+..|...-...... .......++..++.|+.+ ..+..|+...+. .+..+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 3344556543 35777888887765533221111 112222355566666643 345666654332 1111111
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCC---eEEEEecCCCce
Q 011224 324 HQGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQDKY 359 (490)
Q Consensus 324 h~~~v~~v~~~~~~~~l~s~~~dg---~i~iwd~~~~~~ 359 (490)
.......+. -+|++.+.||.++ .+..||..+...
T Consensus 352 ~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 352 PRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 111111222 2677778887654 466788766544
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.03 E-value=3.7 Score=41.10 Aligned_cols=148 Identities=16% Similarity=0.307 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCeEEEEECCCceeEEecCCCCCEEEEEecCCC----CEEEEEeCCCeEEEEEcc---
Q 011224 202 KDVTTLDWNGEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG----DYLLTGSCDKTAIVWDVK--- 272 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~--~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~----~~l~s~s~D~~v~iwd~~--- 272 (490)
.+|..++|....+.+++.- .+|.+++=|. ..-+.-.-|+++.|.|-+ ..|++....+.|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 4688899985555555543 2333332221 122333468999999853 367777788999999875
Q ss_pred --CcceeEeeeeecc---Ce--EEEEccCCceE--EEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEE
Q 011224 273 --TEEWKQQFEFHSG---PT--LDVDWRNNVSF--ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 273 --~~~~~~~~~~~~~---~~--~~~~~~~~~~~--~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 343 (490)
..++.....++-. |+ ...-|++...+ +....|-.|+.--...+..++.=-...+.|.|.+|.+||+.|+.+
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence 2333322222211 11 12346554433 334444444322111222232222346789999999999876554
Q ss_pred e-CCCeEEEEecC
Q 011224 344 S-DDVTAKIWNMK 355 (490)
Q Consensus 344 ~-~dg~i~iwd~~ 355 (490)
- ..=.-.|||-.
T Consensus 174 vGSsLHSyiWd~~ 186 (671)
T PF15390_consen 174 VGSSLHSYIWDSA 186 (671)
T ss_pred eCCeEEEEEecCc
Confidence 3 33345788853
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.86 E-value=7.3 Score=35.47 Aligned_cols=139 Identities=15% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCeEEEEEcCCCCEEEEEe---CCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEE-ccCccee
Q 011224 202 KDVTTLDWNGEGTLLATGS---YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD-VKTEEWK 277 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~---~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd-~~~~~~~ 277 (490)
..+...+++++++.++... ....++++...+.....+.+ ..+..-.|.+++...+....+...+++. ...+...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688899999998776655 33456666555444433332 2667778888876666555555555552 1221110
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe---CCCeEEEEec
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNM 354 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~dg~i~iwd~ 354 (490)
. ..++ ...-.+.|..+.+||||..+|.-. .++.|.+=-+
T Consensus 102 ~---------~~v~-----------------------------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 102 P---------VEVD-----------------------------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred e---------EEec-----------------------------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 0 0000 001112799999999999876555 3466666543
Q ss_pred C---CC--ce----eeeeccccccEEEEEEcCCCC
Q 011224 355 K---QD--KY----VHDLREHSKEIYTIRWSPTGS 380 (490)
Q Consensus 355 ~---~~--~~----~~~~~~~~~~i~~v~~~p~g~ 380 (490)
. .+ .. +.........+..+.|.+++.
T Consensus 144 ~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 144 VRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred EeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 2 22 11 111112345788999998875
No 418
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.80 E-value=10 Score=36.94 Aligned_cols=195 Identities=12% Similarity=0.151 Sum_probs=90.5
Q ss_pred CCCEEEEEE-CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeeccc-ccC--CCCeEEEEEcCCCCEEEEEeCC------
Q 011224 153 AGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT-NEK--SKDVTTLDWNGEGTLLATGSYD------ 222 (490)
Q Consensus 153 ~~~~l~sgs-~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~V~~~~~s~~~~~l~sg~~d------ 222 (490)
+.++|+..+ ..+.|.|.|+.+..... ...+.+.... ..+ -..-..+.--|+|++++|+-.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P---------~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP---------RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC---------ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 346777777 66789999987532211 1111111100 000 0001112224688888886332
Q ss_pred CeEEEEECCC-ceeEEecC---CCCCEEEEEecCCCCEEEEEeC--------------------CCeEEEEEccCcceeE
Q 011224 223 GQARIWSTNG-DLKCTLSK---HKGPIFSLKWNKKGDYLLTGSC--------------------DKTAIVWDVKTEEWKQ 278 (490)
Q Consensus 223 g~i~iw~~~~-~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~--------------------D~~v~iwd~~~~~~~~ 278 (490)
|.+.+.|-++ ........ ...--+.+-|.|..+.++|... -.++.+||+.+.+.++
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 4556666553 22222221 1223467778888888888753 3689999999999999
Q ss_pred eeeeec--cCeEEEEcc----CCceEEEEcCCCeEEEEEcC-CCc----ceeEec-----CC------------CCCeeE
Q 011224 279 QFEFHS--GPTLDVDWR----NNVSFATSSTDNMIYVCKIG-ENR----PIKTFA-----GH------------QGEVNC 330 (490)
Q Consensus 279 ~~~~~~--~~~~~~~~~----~~~~~~~~~~d~~i~~~~~~-~~~----~~~~~~-----~h------------~~~v~~ 330 (490)
++.... ..++.+.|. ...-|+.+.....|+.|-.. .+. .+..+. +- ..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 887654 345677763 23457777777777776542 221 111111 00 234788
Q ss_pred EEEcCCCCEEEEEe-CCCeEEEEecCC
Q 011224 331 VKWDPTGSLLASCS-DDVTAKIWNMKQ 356 (490)
Q Consensus 331 v~~~~~~~~l~s~~-~dg~i~iwd~~~ 356 (490)
+.+|.|.++|..+. .+|.||.||+..
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCC
Confidence 99999999886554 689999999864
No 419
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.78 E-value=3 Score=40.28 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=82.4
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCC---ceeEEe-cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe----e
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNG---DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ----F 280 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~---~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----~ 280 (490)
|-.|.+..+.+-..|.+.=|-+.+ +....+ ....++|.+++|++|.+.|+.--.+++|.+.+....+.... .
T Consensus 29 FfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c 108 (657)
T KOG2377|consen 29 FFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC 108 (657)
T ss_pred eeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh
Confidence 334445555555566666675433 222222 23567999999999999999999999999998743332221 1
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEE
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 343 (490)
......+....|..+..++.-.+.|.=..--....+.++....|...|+=..|.++-+.+.-+
T Consensus 109 k~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 109 KTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred ccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 222344778888877777666555532222222233344455677777777888877765433
No 420
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.74 E-value=4 Score=42.01 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=68.0
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-
Q 011224 329 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE- 406 (490)
Q Consensus 329 ~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~- 406 (490)
.-+.-+.-++..+.-+...++.|||.+.+....+-. .....|..+.|...+. .+.+|+ -+....|.++--.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d------~qsiLa-VGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPD------GQSILA-VGFPHHVLLYTQLR 105 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCC------CCEEEE-EEcCcEEEEEEccc
Confidence 334444445554444455679999998876543322 4567899999975433 334555 4567788887431
Q ss_pred ----CC----eEEEE--eeCCC-CCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 407 ----LG----KLLYS--LNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 407 ----~~----~~~~~--~~~h~-~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
+. ..+.. +..|+ .+|.+..|.++|.+++.+| +.+.|++-
T Consensus 106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11 22222 33344 5799999999998776554 56888874
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=14 Score=38.29 Aligned_cols=51 Identities=20% Similarity=0.328 Sum_probs=38.7
Q ss_pred CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011224 222 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 273 (490)
--.|+|++..|.....+.-..+++.++.|+.+. .|+.-..+|++.+|++-.
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 356899998887766554444478899999764 577778999999999754
No 422
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=5.4 Score=38.61 Aligned_cols=125 Identities=16% Similarity=0.305 Sum_probs=78.1
Q ss_pred cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce----eeeeccccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 316 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
.|+..-....|+|.++.||+|.+.+|.--.+.+|.+++...... .++.+.....|....|+.... +
T Consensus 57 VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e----------~ 126 (657)
T KOG2377|consen 57 VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE----------I 126 (657)
T ss_pred CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee----------E
Confidence 34433334567999999999999999999999999998743332 223334455688889976532 3
Q ss_pred EEEECCCcEEEEeCCC-CeEEEEeeCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEcCCCe
Q 011224 392 ASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIWSLKEGK 451 (490)
Q Consensus 392 ~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s--~dg~i~iw~~~~~~ 451 (490)
|--+..| +-+|-+.. .+.+...+.|...|+--.|.++.+.+.-++ ..+++.=+.++++.
T Consensus 127 A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred EEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 3333333 56665442 233444566777888888988876543332 33444444444443
No 423
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.54 E-value=8 Score=35.13 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=86.8
Q ss_pred EEEEcCCCC-EEEEEeCCCe-EEEEecCCCceeeeeccccccEE--EEEEcCCCCCCCCCCCcEEEEEEE----CCCcEE
Q 011224 330 CVKWDPTGS-LLASCSDDVT-AKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPNQQLILASAS----FDSTVK 401 (490)
Q Consensus 330 ~v~~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~--~v~~~p~g~~~~~~~~~~~l~sgs----~dg~i~ 401 (490)
.++++|... -++.+-.-|+ ..++|........++......-+ .-.|||+|. ++.+|-. .-|.|-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~--------~LYATEndfd~~rGViG 143 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGR--------LLYATENDFDPNRGVIG 143 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCc--------EEEeecCCCCCCCceEE
Confidence 477777654 3566666665 46788877766555433222211 125777775 2333321 136799
Q ss_pred EEeCCCC-eEEEEeeCCCCCEEEEEECCCCCEEEEEeC------C------------CcEEEEEcCCCeEEEEEec----
Q 011224 402 LWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSL------D------------KSMHIWSLKEGKIVKTYTG---- 458 (490)
Q Consensus 402 iwd~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~------d------------g~i~iw~~~~~~~~~~~~~---- 458 (490)
|||.+.+ +.+.++..|.-.-..+.|.+||+.|+.+.. | -++.+-+..+|.++....-
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 9998854 456678888877789999999999987643 1 1344555556665433221
Q ss_pred -CCCEEEEEECCCCCEEEEE
Q 011224 459 -NGGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 459 -~~~v~~~~~~~~g~~la~~ 477 (490)
.-.+-.++..+||..++.|
T Consensus 224 ~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hhcceeeeeeCCCCcEEEEE
Confidence 1246788888888877776
No 424
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.50 E-value=1.9 Score=42.11 Aligned_cols=148 Identities=16% Similarity=0.180 Sum_probs=84.3
Q ss_pred CCCEE-EEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEEE
Q 011224 336 TGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYS 413 (490)
Q Consensus 336 ~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~ 413 (490)
+..+| ..|+.-..+.--|+..|+.+.+...|... -+.|.|..........+. | .|-.+..|.=.|.+. |..+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqt-l-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQT-L-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccce-E-EeecccceEEecccccCCceee
Confidence 34444 34555556666678888888877766654 456677654322222222 2 344455554456542 322221
Q ss_pred eeCCCCCEEEEEECC----CCCEEEEEeCCCcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 414 LNGHREPVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 414 ~~~h~~~v~~l~~sp----dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.. ...-++--.||. ...|+|.||.-|-|++||.-.-+.-..+++ ...|-.+.-+.+|+++.+.+.+ .+-+.|+
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 11 112223333433 345899999999999999654333333444 3358889999999977766554 5656565
Q ss_pred e
Q 011224 489 R 489 (490)
Q Consensus 489 ~ 489 (490)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 4
No 425
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.42 E-value=10 Score=36.12 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=34.1
Q ss_pred EEEEEECCCcEEEEeCCCCeEEE---E-eeCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 390 ILASASFDSTVKLWDVELGKLLY---S-LNGHREPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~~~~~~~---~-~~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
++++.-..+.|....+..+..+. . +......+.+|++.|||.++++-..+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 44444445677777776443322 1 233444799999999999888877888764
No 426
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.41 E-value=11 Score=36.60 Aligned_cols=128 Identities=12% Similarity=0.225 Sum_probs=64.4
Q ss_pred eCCCeEEEEecCCCceeeeecccc--ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeC-CCCe----EEEEeeC
Q 011224 344 SDDVTAKIWNMKQDKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV-ELGK----LLYSLNG 416 (490)
Q Consensus 344 ~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~-~~~~----~~~~~~~ 416 (490)
..-.++.+||+.+.+.++++.-.. .....|+|..+.. ...-++.+...++|..|-- ..++ .+..+..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~------~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPD------ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCC------ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 345689999999999988876432 3355677765432 2223444444455544432 3332 2223321
Q ss_pred C-----------------CCCEEEEEECCCCCEEEEEe-CCCcEEEEEcCCC---eEEEEEe-c----------------
Q 011224 417 H-----------------REPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEG---KIVKTYT-G---------------- 458 (490)
Q Consensus 417 h-----------------~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~~---~~~~~~~-~---------------- 458 (490)
- ..-|++|..|.|.++|.... ..|.|+.||+.+- +++.... +
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 1 13379999999999997655 5899999999764 3443221 1
Q ss_pred CCCEEEEEECCCCCEEEEE
Q 011224 459 NGGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 459 ~~~v~~~~~~~~g~~la~~ 477 (490)
.++..=+..|.||++|-..
T Consensus 373 ~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -S----EEE-TTSSEEEEE
T ss_pred CCCCCeEEEccCCeEEEEE
Confidence 1233557788899877654
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.02 E-value=0.55 Score=29.01 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.5
Q ss_pred CCEEEEEECCC-C--CEEEEEECCCcEEEEEee
Q 011224 460 GGIFEVCWNKE-G--DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 460 ~~v~~~~~~~~-g--~~la~~~~d~~v~v~~~~ 489 (490)
+.+-++.|+|. + ++||.+-..+.|+|+|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 35778999985 4 599999999999999998
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.86 E-value=2.6 Score=41.29 Aligned_cols=140 Identities=13% Similarity=0.181 Sum_probs=82.7
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC--------CEEEEEeCCCeEEEEecCCC--ce-eeeecc
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--------SLLASCSDDVTAKIWNMKQD--KY-VHDLRE 365 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--------~~l~s~~~dg~i~iwd~~~~--~~-~~~~~~ 365 (490)
.+..+.....++-.|+..++.+..+.-|..- -|.|.|+. +.|+.-|..+..| .|.+-. +. +...+
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gNKi~v~esK- 557 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGNKIKVVESK- 557 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEE-ecccccCCceeeeeeh-
Confidence 3445666677888888888888888777654 46777753 3344444444333 344322 11 11111
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 445 (490)
...+.-.|+..+. ...-++|.||.-|.||+||--..+....+.+....|-.|..+.+|++|++.+. ..+.+-
T Consensus 558 --dY~tKn~Fss~~t-----TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~ 629 (776)
T COG5167 558 --DYKTKNKFSSGMT-----TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLT 629 (776)
T ss_pred --hcccccccccccc-----ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEE
Confidence 1112222322211 11127999999999999995433333446677788999999999998776553 356666
Q ss_pred EcC
Q 011224 446 SLK 448 (490)
Q Consensus 446 ~~~ 448 (490)
++.
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 653
No 429
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.62 E-value=13 Score=35.67 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=46.3
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC--------
Q 011224 331 VKWDPTGSLLASCS-----DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------- 397 (490)
Q Consensus 331 v~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-------- 397 (490)
=-|.|||..|.--+ .+..|.-+|..++....... .....-+--+++|. +++.=+.|
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~---------L~vGDG~d~p~~v~~~ 311 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGK---------LFVGDGGDAPVDVADA 311 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSS---------EEEEEE----------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCC---------EEEecCCCCCcccccc
Confidence 35788987654322 23356666777665432211 12333444456664 22221222
Q ss_pred --------CcEEEEeCCCCeEEEE---------eeCCCC-CEEEEEECCCCCEEE-EEeCCCcEEEEEc
Q 011224 398 --------STVKLWDVELGKLLYS---------LNGHRE-PVYSLAFSPTGEYLA-SGSLDKSMHIWSL 447 (490)
Q Consensus 398 --------g~i~iwd~~~~~~~~~---------~~~h~~-~v~~l~~spdg~~l~-s~s~dg~i~iw~~ 447 (490)
--|+++++..+....- +.++.. .=-...|||||++++ ++...|...||-+
T Consensus 312 ~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 312 GGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 2466788876654311 111111 114579999999876 5556777777644
No 430
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.56 E-value=1.2 Score=27.21 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=29.4
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCCeEEEEEecCCCEEEEEEC
Q 011224 428 PTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 468 (490)
Q Consensus 428 pdg~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~ 468 (490)
|++++|.++. .+++|.++|..+++.+..+........++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 5777666544 5789999999999888877654445555553
No 431
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.37 E-value=23 Score=37.97 Aligned_cols=309 Identities=13% Similarity=0.170 Sum_probs=156.6
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 011224 145 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 224 (490)
Q Consensus 145 V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~ 224 (490)
|-...|--|..+|+.+..||.+.-+-+....-.. ...+.. .-...|+.--.|+..++.-+-+..|+-
T Consensus 586 Il~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l------------sd~Kk~-~lGt~P~~Lr~f~sk~~t~vfa~sdrP 652 (1096)
T KOG1897|consen 586 ILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL------------SDRKKV-TLGTQPISLRTFSSKSRTAVFALSDRP 652 (1096)
T ss_pred eeeEEeeccceEEEEEcCCceEEEEEEEcccceE------------cccccc-ccCCCCcEEEEEeeCCceEEEEeCCCC
Confidence 4445566678899999999999887664332100 000000 011345666667766655555666777
Q ss_pred EEEEECCCceeEEecCCCCCEE-EEEecCC--CCEEEEEeCCCeEEEEEccCcc--eeEeeeeeccCeEEEEccC-CceE
Q 011224 225 ARIWSTNGDLKCTLSKHKGPIF-SLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRN-NVSF 298 (490)
Q Consensus 225 i~iw~~~~~~~~~~~~h~~~V~-~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 298 (490)
..+|..++....+--.-+ .+. ...|+.+ ...|+++. .+.+++--+..-. .+++...+ .....+.+.+ ...+
T Consensus 653 ~viY~~n~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~ 729 (1096)
T KOG1897|consen 653 TVIYSSNGKLVYSPLSLK-EVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTF 729 (1096)
T ss_pred EEEEecCCcEEEeccchH-HhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEE
Confidence 777766665443211111 111 1123222 13355544 3455655443211 11121111 1122233332 1222
Q ss_pred EEEcC-----------CC---eEEEEEcCCCcceeEecCCC-------CCeeEEEEcCC-CCEEEEEeC----------C
Q 011224 299 ATSST-----------DN---MIYVCKIGENRPIKTFAGHQ-------GEVNCVKWDPT-GSLLASCSD----------D 346 (490)
Q Consensus 299 ~~~~~-----------d~---~i~~~~~~~~~~~~~~~~h~-------~~v~~v~~~~~-~~~l~s~~~----------d 346 (490)
.+.+. .. .++++|-.+ ...+..|. ..+.++.|..| +.+++.|.. .
T Consensus 730 ~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT---f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~ 806 (1096)
T KOG1897|consen 730 GVLSNRIESSAEYYGEEYEVSFLRVLDQNT---FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVN 806 (1096)
T ss_pred EEEecccccchhhcCCcceEEEEEEecCCc---eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCccc
Confidence 22211 11 133333322 22333332 23556668777 677777752 4
Q ss_pred CeEEEEecCCCceeeeecc--ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEE
Q 011224 347 VTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424 (490)
Q Consensus 347 g~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 424 (490)
|.|.+|.+...+.+..... -.+.++++.- -+|. +| ++-+..|++|++.+.+.++.-..|..++..|
T Consensus 807 GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngk---------ll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL 874 (1096)
T KOG1897|consen 807 GRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGK---------LL--AGINQSVRLYEWTTERELRIECNISNPIIAL 874 (1096)
T ss_pred ceEEEEEEecCCceeeeeeeeeccceeehhh-hCCe---------EE--EecCcEEEEEEccccceehhhhcccCCeEEE
Confidence 6677776655222222111 1233444432 1221 33 4566789999999887777777788899999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCC--CeEEEEEe--cCCCEEEEEECCCCCEEEEEECCCcEEE
Q 011224 425 AFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYT--GNGGIFEVCWNKEGDKIAACFANHTVCV 485 (490)
Q Consensus 425 ~~spdg~~l~s~s~dg~i~iw~~~~--~~~~~~~~--~~~~v~~~~~~~~g~~la~~~~d~~v~v 485 (490)
...-.|..++.|..-++|.+-..+. |.....-. ....+.++.+-. +..++.+-.+|.+.+
T Consensus 875 ~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~-~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 875 DLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD-DDTYLGAENSGNLFT 938 (1096)
T ss_pred EEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEec-CceEEeecccccEEE
Confidence 9999999999998888777665543 33432221 122345555433 344444545555544
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.30 E-value=4 Score=40.17 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=54.1
Q ss_pred CEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC
Q 011224 244 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 323 (490)
Q Consensus 244 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 323 (490)
.|..+..++.|..++-.+.+|.+.++=.+....-..|......+.|-.+.-...|.+++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss--------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS--------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC---------------------
Confidence 56778889999988888888877765433221111222111122222221111111111
Q ss_pred CCCCeeEEEEcCCC---CEEEEEeCCCeEEEEecCCCc
Q 011224 324 HQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 324 h~~~v~~v~~~~~~---~~l~s~~~dg~i~iwd~~~~~ 358 (490)
..-.+..++|||+. ..+..-+.|.+||+||+....
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 11245678999986 567778889999999986544
No 433
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.26 E-value=1.9 Score=36.66 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
.+..++|||.|.+ ++..++||+...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~---~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG---PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC---CCCceEEEEEcCCCeEEEEecCC
Confidence 6788999998863 44678999999999999997653
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=91.13 E-value=17 Score=36.68 Aligned_cols=142 Identities=10% Similarity=0.034 Sum_probs=64.1
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCceeEEecCCCCC--EEEEEecCCCCEEEEEeCC--CeEEEEEccCcceeEeeee
Q 011224 212 EGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 212 ~~~~l~sg~~dg-----~i~iw~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~ 282 (490)
++.+++.||.++ .+..||.....-..+..-..+ -.+++ .-++...+.|+.+ .++..||+.+..|...-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 345666777543 455666554322222111100 01122 1245555666653 4688899887777543222
Q ss_pred eccC-eEEEEccCCceEEEEcCCC---eEEEEEcCCCccee--EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 283 HSGP-TLDVDWRNNVSFATSSTDN---MIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
.... -......++..++.|+.++ .+..|+..++.-.. .+....... +++ .-++++.+.|+ .+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecCCC
Confidence 1111 1122233455666665432 34555544332110 010011111 222 23566667664 467788776
Q ss_pred Cce
Q 011224 357 DKY 359 (490)
Q Consensus 357 ~~~ 359 (490)
++.
T Consensus 425 ~~W 427 (480)
T PHA02790 425 NTW 427 (480)
T ss_pred CcE
Confidence 544
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.07 E-value=15 Score=38.45 Aligned_cols=109 Identities=10% Similarity=0.163 Sum_probs=71.9
Q ss_pred cCCceEEEEcCCCeEEEEEcCC-------C-------------cceeEecCCCCCeeEEEEc--CCCCEEEEEeCCCeEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGE-------N-------------RPIKTFAGHQGEVNCVKWD--PTGSLLASCSDDVTAK 350 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~-------~-------------~~~~~~~~h~~~v~~v~~~--~~~~~l~s~~~dg~i~ 350 (490)
.+...++.+.+||.|.+|.+.. . +|...+. -...+++++++ ...++||.++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence 3445678899999999997521 0 1111121 23478999999 8889999999999998
Q ss_pred EEecCCC--ce-eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeC
Q 011224 351 IWNMKQD--KY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405 (490)
Q Consensus 351 iwd~~~~--~~-~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~ 405 (490)
||-+... +. ...-..+..-|.+|.|-++... +.....|++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d---~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLD---PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCCC---CccceEEEEEeccCcEEEEEE
Confidence 8865431 11 1111124556888888776532 222247888999999999887
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=12 Score=37.14 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=53.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 406 (490)
.|..+..++.|..++-.|.+|.+.++=.+....-..+......|+| |.+.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~C----------------------------Rt~~i- 155 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNC----------------------------RTTPV- 155 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEE----------------------------Eeecc-
Confidence 5778889999999999999997766532221111111111111111 11111
Q ss_pred CCeEEEEeeCCCCCEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCeEE
Q 011224 407 LGKLLYSLNGHREPVYSLAFSPTG---EYLASGSLDKSMHIWSLKEGKIV 453 (490)
Q Consensus 407 ~~~~~~~~~~h~~~v~~l~~spdg---~~l~s~s~dg~i~iw~~~~~~~~ 453 (490)
+..+++-..| -.+..++|+|+. ..|..-+.|+.|++|++..-..+
T Consensus 156 -~~~~ftss~~-ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 156 -AERFFTSSTS-LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred -cceeeccCCc-eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 1222222212 235667888875 56666677888888887654433
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.60 E-value=26 Score=37.21 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=54.7
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCC-CCCCCCCCCCCceeEEEEeee---cccccCCCCeEEEEEcCC---CCE
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGE---GTL 215 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~~~~s~~---~~~ 215 (490)
-.|+-|.+||+|++||-.|..|.+.+ .+.. .........+.....+..... -+....+..|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 36899999999999998888665444 3332 111111122222222111110 112234567999999986 588
Q ss_pred EEEEeCCCeEEEEECC
Q 011224 216 LATGSYDGQARIWSTN 231 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~ 231 (490)
|+.=..|+++|+||..
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999975
No 438
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.28 E-value=14 Score=33.76 Aligned_cols=119 Identities=14% Similarity=0.247 Sum_probs=80.1
Q ss_pred ecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec-cCeEEEEccCCceEEEE-cCCCeEEEEEcCCC
Q 011224 238 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATS-STDNMIYVCKIGEN 315 (490)
Q Consensus 238 ~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~ 315 (490)
+.+-+..|.++.|+|+.+.|++......-.+|=...|+++.++.... ...-.+.+..+..|+.+ -.++.+++..+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34455569999999999999998888888888667788777665332 22334556555556544 46677777666544
Q ss_pred cceeE----------ecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 316 RPIKT----------FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 316 ~~~~~----------~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
..+.. ..........++|.|..+.|..+-+-.-+.||.+..
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 22111 111244577899999999888888877788877653
No 439
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=90.27 E-value=20 Score=35.27 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=81.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCce-----eEEecCCCCCEEEEEecC---C-CCEEEEEeCCCeEEEEEccCc--c-----
Q 011224 212 EGTLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNK---K-GDYLLTGSCDKTAIVWDVKTE--E----- 275 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~~-----~~~~~~h~~~V~~l~~~~---~-~~~l~s~s~D~~v~iwd~~~~--~----- 275 (490)
+...++.|+..|.++||+..... ...-..-..||..|..-+ . ....++.=.-+.+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999975321 111123456887776532 1 222333345577788876321 1
Q ss_pred ---eeEeeeeecc----CeEEEEcc---CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC
Q 011224 276 ---WKQQFEFHSG----PTLDVDWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 345 (490)
Q Consensus 276 ---~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 345 (490)
+...+..+-. ......|. ....+..-+.||.+.+++-+.-.-...+.+ .--.-.+.+.+.-..|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1112222111 11122232 135677889999999998655332222222 112234677788888999999
Q ss_pred CCeEEEEec
Q 011224 346 DVTAKIWNM 354 (490)
Q Consensus 346 dg~i~iwd~ 354 (490)
+..+..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 999998875
No 440
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.26 E-value=15 Score=33.91 Aligned_cols=243 Identities=16% Similarity=0.201 Sum_probs=125.2
Q ss_pred eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC-----------
Q 011224 146 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT----------- 214 (490)
Q Consensus 146 ~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~----------- 214 (490)
..|+|+|.+.+.++...-+...+||.......... .++.+ .+....+ .......+.+.|+....
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~~L~v-tiP~~~~--~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--DPLVV-VIPAPPP--LAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCc--cceEE-EecCCCC--CCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 57999999999999888899999997522111111 01111 1110000 01123456666664322
Q ss_pred -EEEEEeCCCeEEEEECCCcee------EEec-CCCCCEE-EEEecC--CCCEEEEE-eCCCeEEEEEccCccee--Eee
Q 011224 215 -LLATGSYDGQARIWSTNGDLK------CTLS-KHKGPIF-SLKWNK--KGDYLLTG-SCDKTAIVWDVKTEEWK--QQF 280 (490)
Q Consensus 215 -~l~sg~~dg~i~iw~~~~~~~------~~~~-~h~~~V~-~l~~~~--~~~~l~s~-s~D~~v~iwd~~~~~~~--~~~ 280 (490)
.++.++.||+|.-|...-... ..+. ...+.|+ .+++.. .+++|+.+ -..++|.++|-.-.... ..|
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 367889999999998532211 2222 2235553 455553 35666654 35688888874322111 001
Q ss_pred eeec----cCeEEEEccCCceEE-------------EEcCCCeEEEEEcCCCcceeEec--CCCCCeeEEEEcC------
Q 011224 281 EFHS----GPTLDVDWRNNVSFA-------------TSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDP------ 335 (490)
Q Consensus 281 ~~~~----~~~~~~~~~~~~~~~-------------~~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~v~~~~------ 335 (490)
.... .....+.-.....++ .+..-|.|-+++... ..++.+. +.-..-+.|+.-|
T Consensus 181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0000 000011111111222 222335666666643 3333332 2233455666644
Q ss_pred CCCEEEEEeCCCeEEEEecCCCceeeeeccccc------cEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 336 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK------EIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 336 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
.|.+|+----||+|..||..+++.+..+....+ .++.+.|..... ..+.+.+++++|-.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~--~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVS--GGSANYLYFTAGPD 324 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcC--CCCcceEEEEeCCC
Confidence 567888777899999999999988877765433 245666644322 12223455555443
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.05 E-value=0.05 Score=52.30 Aligned_cols=132 Identities=14% Similarity=0.267 Sum_probs=87.8
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecC
Q 011224 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAG 323 (490)
Q Consensus 246 ~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 323 (490)
....|.|.+..++.++.+..+..||-..... .... ..+...+++|. .+..++.+...+.+++|++......+.-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVI-LELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhccee-cccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 4567888888889899999999998433221 1111 11222344443 344556677888999999876543221112
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCC
Q 011224 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379 (490)
Q Consensus 324 h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g 379 (490)
....-.-+.|++-+..++.|-..|.++|++..+.+.+..+-.|...+++++|.+.+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 22222227899988888999899999999988777665555588899999998876
No 442
>PRK10115 protease 2; Provisional
Probab=89.55 E-value=32 Score=36.60 Aligned_cols=193 Identities=9% Similarity=0.070 Sum_probs=96.7
Q ss_pred cceeEEEECCCCCEEEEEE-CCC----cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 143 SEVCACAWSPAGSLLASGS-GDS----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs-~D~----~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
-.+..+.+||||++|+-+. .+| .|++-|+.++...... + ...-..++|++|++.|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------i-------~~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------L-------DNVEPSFVWANDSWTFY 187 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------c-------cCcceEEEEeeCCCEEE
Confidence 4577889999999877543 222 5777777655321100 0 00114589999988766
Q ss_pred EEeCC------CeEEEEECCCc---eeEEecCCCCCEE-EEEecCCCCEEEEEeC---CCeEEEEEcc--CcceeEeeee
Q 011224 218 TGSYD------GQARIWSTNGD---LKCTLSKHKGPIF-SLKWNKKGDYLLTGSC---DKTAIVWDVK--TEEWKQQFEF 282 (490)
Q Consensus 218 sg~~d------g~i~iw~~~~~---~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~---D~~v~iwd~~--~~~~~~~~~~ 282 (490)
-...+ ..|+.+++... ....+.......+ .+..+.++.+++..+. +..+.+|+.. ++.+...+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 65443 35666676543 2223333333333 2233447777654433 3468888842 3332222222
Q ss_pred eccCeEEEEccCCceEEEEcC---CCeEEEEEcCCCcceeEecCC-C-CCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 283 HSGPTLDVDWRNNVSFATSST---DNMIYVCKIGENRPIKTFAGH-Q-GEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~---d~~i~~~~~~~~~~~~~~~~h-~-~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
..+....+....+..++.... ...|...++........+..+ . ..+..+.+. .+.++++...+|.-+++-+.
T Consensus 268 ~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 268 RKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 222222222112223333221 223444444421222334444 3 367778887 44567777778876665443
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.45 E-value=9.5 Score=30.47 Aligned_cols=120 Identities=17% Similarity=0.118 Sum_probs=70.2
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCCCc--------eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 331 VKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 331 v~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
-.|......|++++.-|+|.|++..... .+..+ .....|++++-.+-.. . ...-.|+.|+ ..+|..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~---~-~~~D~LliGt-~t~lla 77 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKP---D-DGRDCLLIGT-QTSLLA 77 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCC---C-CCcCEEEEec-cceEEE
Confidence 4555556678888888899998765332 12222 2345667765444321 0 1112455555 457999
Q ss_pred EeCCCCeEEEEeeCCCCCEEEEEECC---CCCEEEEEeCCCcEEEEEcCCCeEEEEEe
Q 011224 403 WDVELGKLLYSLNGHREPVYSLAFSP---TGEYLASGSLDKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 403 wd~~~~~~~~~~~~h~~~v~~l~~sp---dg~~l~s~s~dg~i~iw~~~~~~~~~~~~ 457 (490)
||+.....++... -.+.|+++.+-. ...-|+..+.+..|.-||....++..+..
T Consensus 78 YDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 78 YDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred EEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 9998877765444 336688887632 12234444557788888876656555543
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.15 E-value=2.7 Score=36.52 Aligned_cols=59 Identities=15% Similarity=0.338 Sum_probs=43.4
Q ss_pred CEEEEEeCCCcEEEEEcC--CCeEEEEEecCCCEEEEEECCCCCEEEEEECC---C---cEEEE-Eee
Q 011224 431 EYLASGSLDKSMHIWSLK--EGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN---H---TVCVL-DFR 489 (490)
Q Consensus 431 ~~l~s~s~dg~i~iw~~~--~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d---~---~v~v~-~~~ 489 (490)
.+|..+...+.|.+|++. ...++.++..-+.|..+..+..|++|++--.+ . .+++| |||
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 344444556789999988 34567888888889999999999999986322 2 45666 665
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.74 E-value=2.4 Score=36.05 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.2
Q ss_pred CEEEEEECCCC------CEEEEEECCCcEEEEE
Q 011224 461 GIFEVCWNKEG------DKIAACFANHTVCVLD 487 (490)
Q Consensus 461 ~v~~~~~~~~g------~~la~~~~d~~v~v~~ 487 (490)
.+..++|||.| .+||+...++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 57789999965 4899999999999985
No 446
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.61 E-value=8.9 Score=39.85 Aligned_cols=124 Identities=15% Similarity=0.222 Sum_probs=64.7
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCC----CCCCCCC----CCCceeEE---EEeeeccc------------
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADG----TSNGGAQ----NGPLNVLV---LKHVKGRT------------ 197 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~----~~~~~~~----~~~~~~~~---~~~~~~~~------------ 197 (490)
-..+|-+.+||.|.+.++....+..|.+.+-.-. ....... +..+.+-- -.++++..
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~ 190 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPY 190 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcc
Confidence 4578999999999997777777788888763210 0000000 00000000 00000000
Q ss_pred c-------cCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCC
Q 011224 198 N-------EKSKDVTTLDWNGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 264 (490)
Q Consensus 198 ~-------~~~~~V~~~~~s~~~~~l~sg~~d----g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~ 264 (490)
. .-...-.-+.|-.|..|++.+... +.+++|..++.+-......++.-..+.|-|+|..++|-+.||
T Consensus 191 ~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~ 268 (1243)
T COG5290 191 MVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDG 268 (1243)
T ss_pred cccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCC
Confidence 0 001112345677777777766543 346667655543322222333335589999999999877554
No 447
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.40 E-value=5.5 Score=29.44 Aligned_cols=48 Identities=6% Similarity=-0.050 Sum_probs=32.4
Q ss_pred EeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEE-ECCCcE
Q 011224 436 GSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTV 483 (490)
Q Consensus 436 ~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~-~~d~~v 483 (490)
+..+|.+.-||..+++......+-.-.+.++.+||++.|+.+ +....|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceE
Confidence 445688999999998865555555567999999999977766 333334
No 448
>PRK10115 protease 2; Provisional
Probab=87.94 E-value=40 Score=35.82 Aligned_cols=235 Identities=7% Similarity=0.043 Sum_probs=110.7
Q ss_pred CeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCce--eEEecCCCCCEEEEEecCCCCEEEEEeCC------CeEEEE
Q 011224 203 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVW 269 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~d-----g~i~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D------~~v~iw 269 (490)
.+..+.|||||++|+.+... ..|++-++.+.. ...+.+ .-..++|.++++.|+-...+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899999988865332 356777775432 112221 11569999999876655432 357777
Q ss_pred EccCc--ceeEeeeeeccCeE-EEEcc-CCc-eEEEE--cCCCeEEEEEcC--CCcceeEecCCCCCeeEEEEcCCCCEE
Q 011224 270 DVKTE--EWKQQFEFHSGPTL-DVDWR-NNV-SFATS--STDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLL 340 (490)
Q Consensus 270 d~~~~--~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~--~~d~~i~~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~l 340 (490)
++.+. +-...+........ ..... +.. .++.+ ..++.+++++.. ...+...+..-.+....+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88776 33333332222222 11112 222 23222 234567777742 2222212211112222222 3233333
Q ss_pred EEEeCC-CeEEEE--ecCCCceeeeeccc-c-ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEEEe
Q 011224 341 ASCSDD-VTAKIW--NMKQDKYVHDLREH-S-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSL 414 (490)
Q Consensus 341 ~s~~~d-g~i~iw--d~~~~~~~~~~~~~-~-~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~ 414 (490)
+....+ ...+|. ++........+..+ . ..+..+.+..+ .++++...+|.-+++-+.. +..+..+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD----------WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC----------EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 333221 233333 33311111223333 2 35666666532 3677777787766654432 2233443
Q ss_pred e-CCCCCEEEEEEC--CCC-CEEEEEeC---CCcEEEEEcCCCe
Q 011224 415 N-GHREPVYSLAFS--PTG-EYLASGSL---DKSMHIWSLKEGK 451 (490)
Q Consensus 415 ~-~h~~~v~~l~~s--pdg-~~l~s~s~---dg~i~iw~~~~~~ 451 (490)
. .....+..+.++ +++ .++++.+. -+.+..+|+.+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 354 AFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred cCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3 222223334455 443 35544432 3678888887765
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=87.84 E-value=26 Score=33.47 Aligned_cols=174 Identities=9% Similarity=0.060 Sum_probs=88.0
Q ss_pred EeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeE-ecCCCCCeeEEEEcCCCC
Q 011224 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGS 338 (490)
Q Consensus 260 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~ 338 (490)
++..|.|..=+-....|........+.+..+...++..++..+..|.++.-....+..-.. ..+-...+.++.+.++++
T Consensus 148 ~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~ 227 (334)
T PRK13684 148 ATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN 227 (334)
T ss_pred eeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC
Confidence 3444544333222233443322223445566665566666666666665431111111111 122345788999999998
Q ss_pred EEEEEeCCCeEEEEecCCCceeeeecc----ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe
Q 011224 339 LLASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL 414 (490)
Q Consensus 339 ~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~ 414 (490)
+++.| ..|.+++=....+..-..... ....++.+.+.|++. ++ .++.+|.|.. ....++.-...
T Consensus 228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~---------~~-~~G~~G~v~~-S~d~G~tW~~~ 295 (334)
T PRK13684 228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE---------IW-AGGGNGTLLV-SKDGGKTWEKD 295 (334)
T ss_pred EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC---------EE-EEcCCCeEEE-eCCCCCCCeEC
Confidence 87765 457665422333221111111 123467788887654 33 4455675543 33433332222
Q ss_pred e---CCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 415 N---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 415 ~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
. +-....+.+.|..+++.+++ +..|.|.-|+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 296 PVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 2 22235788888877766664 5577777665
No 450
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.66 E-value=38 Score=35.24 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=26.1
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIAD 173 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~ 173 (490)
-++++.-+|.|+-+++|+.||+|++|++..
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 367788889999999999999999999754
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.00 E-value=7.6 Score=34.43 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=51.3
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCceeE--------Eec-------CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNGDLKC--------TLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~~~~~--------~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~ 273 (490)
+...+.+|+.-..+|.+++||+...... .+. .....|..+.++.+|.-+++-+ +|....|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999998653221 111 3456788888888887776655 57889999887
Q ss_pred cceeEee
Q 011224 274 EEWKQQF 280 (490)
Q Consensus 274 ~~~~~~~ 280 (490)
+.|+...
T Consensus 97 ~~W~~vs 103 (219)
T PF07569_consen 97 GCWIRVS 103 (219)
T ss_pred ceeEEec
Confidence 7776543
No 452
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.89 E-value=3.8 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=19.4
Q ss_pred CCCCCEEEEEECCCCCEEEEE-eCC--CcEEEE
Q 011224 416 GHREPVYSLAFSPTGEYLASG-SLD--KSMHIW 445 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~-s~d--g~i~iw 445 (490)
.....-...+|||||++|+-+ ..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567788999999888754 445 565555
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.84 E-value=35 Score=33.95 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeeec-----cccccEEEEEEcCCC
Q 011224 325 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLR-----EHSKEIYTIRWSPTG 379 (490)
Q Consensus 325 ~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~i~~v~~~p~g 379 (490)
-...+.|+|.|||++|++--..|.|++++..++.. +..+. ........|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34567899999999888776679999997654422 21111 124567889999875
No 454
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.83 E-value=33 Score=33.70 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=37.9
Q ss_pred EEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCE--EEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPV--YSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 389 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
..++.++.++++.||. ..++++...-...|| .-..|..-...|++-+.+|.+.+-=+.|
T Consensus 301 ~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 3577889999999984 346666655444443 2223333356788888888888765543
No 455
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.76 E-value=43 Score=34.92 Aligned_cols=185 Identities=11% Similarity=0.198 Sum_probs=87.9
Q ss_pred CCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeE---ecCCCCCeeEEEEcCCCCE
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT---FAGHQGEVNCVKWDPTGSL 339 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~~ 339 (490)
--.|+|++... ..........+.+..+.|..+..++.-..+|+++++++-....-.. +......|.-+.+..+|-.
T Consensus 63 ~~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 63 RPYIRIFNISG-QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred ceeEEEEeccc-cchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 34677887643 3333333334477889999999999999999999998754321110 0111222333333335543
Q ss_pred EEEEeCCCeEEEEecCCCceeeeecc-ccccEEEEEEc--CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-EEEEee
Q 011224 340 LASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWS--PTGSGTNNPNQQLILASASFDSTVKLWDVELGK-LLYSLN 415 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~--p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-~~~~~~ 415 (490)
+.+ .+|.+.+-.-.....+..+.. ........+|. +.+.. ...+|...-..+ ..+.-...+. ....+.
T Consensus 142 vlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~-----~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~ 213 (829)
T KOG2280|consen 142 VLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQ-----STILLDVDVAVG-LHICQVEESRVQLHALS 213 (829)
T ss_pred EEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCc-----ceeEEeechhhh-hcccceecccccccccC
Confidence 333 344444432222111222211 11111112222 11110 001111110000 0111111110 011111
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
.-...+..++.||++++||--..+|.|.+-+....+....+
T Consensus 214 ~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~ 254 (829)
T KOG2280|consen 214 WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEF 254 (829)
T ss_pred CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhcc
Confidence 12245778899999999999999999998887765554444
No 456
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.70 E-value=38 Score=34.20 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=59.5
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc---EEEEEEcCCCCCCCCCCCcEEEEEEEC-----------
Q 011224 331 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE---IYTIRWSPTGSGTNNPNQQLILASASF----------- 396 (490)
Q Consensus 331 v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---i~~v~~~p~g~~~~~~~~~~~l~sgs~----------- 396 (490)
+..-++|.+++..+ ..+..+|+. |+.+......... -+.+..-|+|. +|+.+..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn---------~L~l~~~~~~~~~~~~~~ 220 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN---------LLILASETKYVDEDKDVD 220 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS----------EEEEEEETTEE-TS-EE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC---------EEEEEeecccccCCCCcc
Confidence 56678898886655 778888875 4444333221111 23444556653 3333330
Q ss_pred --CCcEEEEeCCCCeEEEEee--CCC-------------------------CCEEEEEECC-CCCEEEEEeCCCcEEEEE
Q 011224 397 --DSTVKLWDVELGKLLYSLN--GHR-------------------------EPVYSLAFSP-TGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 397 --dg~i~iwd~~~~~~~~~~~--~h~-------------------------~~v~~l~~sp-dg~~l~s~s~dg~i~iw~ 446 (490)
...|..+| .+|+.+..+. .|- -.+++|.+.+ ++.+|+|+-....|...|
T Consensus 221 ~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id 299 (477)
T PF05935_consen 221 TVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKID 299 (477)
T ss_dssp --S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred EecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEE
Confidence 12355556 6676665532 110 1389999998 566666666667899999
Q ss_pred cCCCeEEEEEecC
Q 011224 447 LKEGKIVKTYTGN 459 (490)
Q Consensus 447 ~~~~~~~~~~~~~ 459 (490)
.+++++...+..+
T Consensus 300 ~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 300 YRTGKIKWILGPP 312 (477)
T ss_dssp -TTS-EEEEES-S
T ss_pred CCCCcEEEEeCCC
Confidence 9999988887554
No 457
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.93 E-value=43 Score=37.19 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.8
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEec
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTI 171 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~ 171 (490)
....++|+|.-+++|-|...|.|+++-.
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecc
Confidence 4567899999999999999999999964
No 458
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=85.62 E-value=9.9 Score=35.58 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCcEEEEeCCCCeEEEEee---------------------------CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 397 DSTVKLWDVELGKLLYSLN---------------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~---------------------------~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
|+.+.-.|+.+++.+++.. ..---|++|...++|.+|+|.-.-.+|.+.+..+
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Q ss_pred CeEEEEEecC-CCEEE-----EEECCCCCEEEEEECCCcEEEEE
Q 011224 450 GKIVKTYTGN-GGIFE-----VCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 450 ~~~~~~~~~~-~~v~~-----~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
|+++..+.+. ..-+. ++|.-+-+.+-.+..+++|.|+|
T Consensus 175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEc
No 459
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.61 E-value=9.3 Score=39.88 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=67.6
Q ss_pred EEEEEECCCcEEEEeCCC-------C-------------eEEEEeeCCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEEc
Q 011224 390 ILASASFDSTVKLWDVEL-------G-------------KLLYSLNGHREPVYSLAFS--PTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~~-------~-------------~~~~~~~~h~~~v~~l~~s--pdg~~l~s~s~dg~i~iw~~ 447 (490)
+|+.|..||.|.+|.+.. . ++.+.+. ....+++|+++ ...++||+++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 788899999999996521 0 0112222 23478999998 77888888888888888765
Q ss_pred CC--CeE--EEEEecCCCEEEEEECCCC---C---EEEEEECCCcEEEEEe
Q 011224 448 KE--GKI--VKTYTGNGGIFEVCWNKEG---D---KIAACFANHTVCVLDF 488 (490)
Q Consensus 448 ~~--~~~--~~~~~~~~~v~~~~~~~~g---~---~la~~~~d~~v~v~~~ 488 (490)
.. .+. .........|.+++|-++. . .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 43 221 1122334568888887743 2 7888999999999987
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.24 E-value=31 Score=31.91 Aligned_cols=223 Identities=15% Similarity=0.171 Sum_probs=120.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECC-----C---ceeEEecC-----CCCCEEEEEecCCCC------------E
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-----G---DLKCTLSK-----HKGPIFSLKWNKKGD------------Y 256 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-----~---~~~~~~~~-----h~~~V~~l~~~~~~~------------~ 256 (490)
..-+.|+++|.+.+-++....+...+|+.+ + .+..++.. -....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 345778999999988888888999999976 2 12223332 224567888874332 3
Q ss_pred EEEEeCCCeEEEEEccCcce---e--Eeeeee-ccCeE-EEEc----cCCceEEEEcCCCeEEEEEcCCCccee--Eec-
Q 011224 257 LLTGSCDKTAIVWDVKTEEW---K--QQFEFH-SGPTL-DVDW----RNNVSFATSSTDNMIYVCKIGENRPIK--TFA- 322 (490)
Q Consensus 257 l~s~s~D~~v~iwd~~~~~~---~--~~~~~~-~~~~~-~~~~----~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~- 322 (490)
|+.++.||+|.-|...-... . ..+... .+.+. .+.. ..+..+++--..++|-++|-.-.++.. .|.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 68889999999998532221 1 111111 12221 1111 123344444456666666532221100 000
Q ss_pred ---------------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec--cccccEEEEEEcCCCCCCCCC
Q 011224 323 ---------------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNP 385 (490)
Q Consensus 323 ---------------~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~p~g~~~~~~ 385 (490)
+..-.|+-..-.++.+.=+.|..-|.|-+||+. +.+++.+. +.-..-+.++..|..-+....
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000011112222333222334445788899875 55555552 223344556665643322111
Q ss_pred CCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC------CCEEEEEECC
Q 011224 386 NQQLILASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSP 428 (490)
Q Consensus 386 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~sp 428 (490)
-+|+---.||+|..||..+++.+-.+..-. ...+.|+|..
T Consensus 262 ---~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ---ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ---CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 155555679999999999998877765432 2457888865
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.39 E-value=5.6 Score=41.01 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=43.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-----cee-EE-e---------cC-----------CCCCEEEEEecC----CCCEEEE
Q 011224 211 GEGTLLATGSYDGQARIWSTNG-----DLK-CT-L---------SK-----------HKGPIFSLKWNK----KGDYLLT 259 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~-----~~~-~~-~---------~~-----------h~~~V~~l~~~~----~~~~l~s 259 (490)
++...++.+..||.+....... ... .. + .+ -.+.+..++.+. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888888887765432 111 10 0 00 123455666666 6689999
Q ss_pred EeCCCeEEEEEccCcceeEeee
Q 011224 260 GSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 260 ~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
-+.|+++|+||+.++.++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866553
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.12 E-value=3.9 Score=24.50 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=18.8
Q ss_pred CCCEEEEEECCCCCEEEEEEC-C--CcEEEE
Q 011224 459 NGGIFEVCWNKEGDKIAACFA-N--HTVCVL 486 (490)
Q Consensus 459 ~~~v~~~~~~~~g~~la~~~~-d--~~v~v~ 486 (490)
...-...+|+|||++|+.++. + |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345678899999999887654 3 555444
No 463
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.02 E-value=45 Score=32.68 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=78.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 328 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 328 v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
...+..++++.+++.+..-..++-||--..-....-......+..+.|.+++. +++ .+..|.+. |....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~---------l~l-~g~~G~l~-~S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGG---------LWL-LTRGGGLY-VSKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCC---------EEE-EeCCceEE-EecCC
Confidence 44566678888777665544444454321111111123345678888888875 333 44566654 33333
Q ss_pred Ce-----EEEEeeC--CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe--c--CCCEEEEEECCCCCEEEE
Q 011224 408 GK-----LLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--G--NGGIFEVCWNKEGDKIAA 476 (490)
Q Consensus 408 ~~-----~~~~~~~--h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~--~--~~~v~~~~~~~~g~~la~ 476 (490)
++ ....+.. -...++++.|.+++..+++| ..|.|.... ..|+.=.... . ...++.+.|.++++.+++
T Consensus 310 G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 310 GLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred CCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 43 2222221 12358999999888866655 567666553 3343211111 1 235889999887766665
Q ss_pred EECCCcEEEE
Q 011224 477 CFANHTVCVL 486 (490)
Q Consensus 477 ~~~d~~v~v~ 486 (490)
| .+|.|-.|
T Consensus 388 G-~~G~il~~ 396 (398)
T PLN00033 388 G-NDGVLLRY 396 (398)
T ss_pred e-CCcEEEEe
Confidence 5 45665443
No 464
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.21 E-value=6.4 Score=40.57 Aligned_cols=37 Identities=35% Similarity=0.516 Sum_probs=29.2
Q ss_pred CEEEEEECC----CCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 420 PVYSLAFSP----TGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 420 ~v~~l~~sp----dg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
.+.+++.++ +..+|++.+.|+++|+||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 456667776 6789999999999999999999996665
No 465
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.82 E-value=84 Score=35.00 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG 232 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~ 232 (490)
.....++|.|.-.+++.|...|.|+++-..+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3456788999999999999999999997554
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.23 E-value=36 Score=29.62 Aligned_cols=171 Identities=12% Similarity=0.163 Sum_probs=78.7
Q ss_pred CCCEEEEEeCC--CeEEEEEccCcceeEeeeeeccCeE--EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCe
Q 011224 253 KGDYLLTGSCD--KTAIVWDVKTEEWKQQFEFHSGPTL--DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 328 (490)
Q Consensus 253 ~~~~l~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v 328 (490)
+|+++.+.+.- ..|++||+.+++....-......+. .+.-..+..+...=.++.-+.+|..+-+.+..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 44566666543 3689999998875543322211110 0001122223333445555666655544443332 22333
Q ss_pred eEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc--cccc---EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEE
Q 011224 329 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKE---IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403 (490)
Q Consensus 329 ~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~---i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 403 (490)
+.++. |++.|+.+....+++.-|.++-....++.. ...+ +.-+.|- +| .+.|---.+..|...
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG---------~lyANVw~t~~I~rI 201 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG---------ELYANVWQTTRIARI 201 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-cc---------EEEEeeeeecceEEE
Confidence 44443 455555555555666656544322222111 0111 1112221 11 122322233344445
Q ss_pred eCCCCeEEEEee------------CCCCCEEEEEECCCC-CEEEEE
Q 011224 404 DVELGKLLYSLN------------GHREPVYSLAFSPTG-EYLASG 436 (490)
Q Consensus 404 d~~~~~~~~~~~------------~h~~~v~~l~~spdg-~~l~s~ 436 (490)
+..+|+.+..+. .|....+.|++.|++ ++++||
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 666666554332 244567889999987 666665
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.16 E-value=11 Score=22.81 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=25.8
Q ss_pred cEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEE
Q 011224 388 QLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 388 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 426 (490)
+.++++.-.++.|.++|..+++.+..+.-... -..++|
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 34566666789999999998888777664322 234444
No 468
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.28 E-value=70 Score=33.75 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=24.5
Q ss_pred CCCCCEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011224 240 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 270 (490)
Q Consensus 240 ~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 270 (490)
.-.+.|...+|+.+...++....+..|.+++
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 3456788889999999777777788888876
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=79.07 E-value=18 Score=35.16 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=86.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeE--E-ecCCCC----CEE-EEEecCCCCEEEEEeCCCeEEEE-Ec
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC--T-LSKHKG----PIF-SLKWNKKGDYLLTGSCDKTAIVW-DV 271 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~--~-~~~h~~----~V~-~l~~~~~~~~l~s~s~D~~v~iw-d~ 271 (490)
...|..+-..|||+.+..-+. .++.|++....... . .....+ .|+ .+..-..|..++.++.||-|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 345677778899998877665 67888876543221 1 111111 111 12223355678899999999999 44
Q ss_pred cCcc-----eeEeeeeeccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC
Q 011224 272 KTEE-----WKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 345 (490)
Q Consensus 272 ~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 345 (490)
+... .++.+.....++.-+... +...|++-...|++.++.....+++.. ..--..+.-+++||.+.++++- +
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-~ 376 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSE-D 376 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheee-c
Confidence 3321 112222222233223222 334566667777776655444443322 1112245668999999988754 4
Q ss_pred CCeEEEEecCCCc
Q 011224 346 DVTAKIWNMKQDK 358 (490)
Q Consensus 346 dg~i~iwd~~~~~ 358 (490)
.|.|+++.+.+..
T Consensus 377 ~gki~~~~l~Nr~ 389 (733)
T COG4590 377 QGKIRLAQLENRN 389 (733)
T ss_pred CCceEEEEecCCC
Confidence 5789998876543
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=77.92 E-value=35 Score=30.71 Aligned_cols=124 Identities=20% Similarity=0.327 Sum_probs=62.4
Q ss_pred EEEEcCCCCEEEEEeC-C--CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC
Q 011224 330 CVKWDPTGSLLASCSD-D--VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406 (490)
Q Consensus 330 ~v~~~~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~ 406 (490)
+-.+-+||++|.+|+. + ..+++++...................-+|.|... ..++.+.+++.|....+..+|.-.
T Consensus 71 gg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~--~L~DG~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 71 GGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT--TLPDGRVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce--ECCCCCEEEEeCcCCCcccccCCc
Confidence 3456789999999886 2 3477777543100011111111122223443221 122334556656665566677643
Q ss_pred C-CeEEEEe--eCC---C---CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe
Q 011224 407 L-GKLLYSL--NGH---R---EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 407 ~-~~~~~~~--~~h---~---~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~ 457 (490)
. ......+ -.. . .----+...|+|++++.+..+ -.|||..+.+.++.+.
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 2 1111111 100 0 001135567999999988865 4566888887766664
No 471
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=77.12 E-value=63 Score=30.06 Aligned_cols=162 Identities=15% Similarity=0.256 Sum_probs=82.2
Q ss_pred eEEEEEccCcceeEeeeeeccC------eEE--EEccCC-----ceEEEEcCCCeEEEEEcCCCcceeEecCCC------
Q 011224 265 TAIVWDVKTEEWKQQFEFHSGP------TLD--VDWRNN-----VSFATSSTDNMIYVCKIGENRPIKTFAGHQ------ 325 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~------~~~--~~~~~~-----~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~------ 325 (490)
.|.+||+.+.+.++++...... ... ++..+. ..+++-+....+.++++.+++.-+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6778899888888877655322 222 333222 345566667789999988876544433221
Q ss_pred -------------CCeeEEEEcC---CCCEEEEEeCCCeEEEEecCCC-----ce---------eeeeccccccEEEEEE
Q 011224 326 -------------GEVNCVKWDP---TGSLLASCSDDVTAKIWNMKQD-----KY---------VHDLREHSKEIYTIRW 375 (490)
Q Consensus 326 -------------~~v~~v~~~~---~~~~l~s~~~dg~i~iwd~~~~-----~~---------~~~~~~~~~~i~~v~~ 375 (490)
..+..++.+| +++.|.-+...+ -++|.+.+. .. +..+-........++.
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 1255556554 555555444332 123333221 00 0111011123344555
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-----CeEEEEeeCC-CCCEEEEEECC--CCCEEEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVEL-----GKLLYSLNGH-REPVYSLAFSP--TGEYLASG 436 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-----~~~~~~~~~h-~~~v~~l~~sp--dg~~l~s~ 436 (490)
++.|. ++++--..+.|..|+... ...+...... -..+.++++.+ +|.+.+..
T Consensus 194 D~~G~---------ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGN---------LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTE---------EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCc---------EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 56553 556666788899999875 2222222222 45788899998 77665554
No 472
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.02 E-value=50 Score=28.81 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=78.5
Q ss_pred CCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEE
Q 011224 153 AGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWS 229 (490)
Q Consensus 153 ~~~~l~sgs--~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~ 229 (490)
+|+++.|.| ....|++|++.+++........+ ...-...++.+ |.++ .-.-.+|...++|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~------------~~~FgEGit~~-----gd~~y~LTw~egvaf~~d 117 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP------------DTVFGEGITKL-----GDYFYQLTWKEGVAFKYD 117 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC------------ccccccceeec-----cceEEEEEeccceeEEEC
Confidence 567777776 34579999998775322111000 00000111111 1111 1223466677777
Q ss_pred CCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee--eccC---eEEEEccCCceEEEEcCC
Q 011224 230 TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGP---TLDVDWRNNVSFATSSTD 304 (490)
Q Consensus 230 ~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~d 304 (490)
...-...--....+.=++++. ++..|+.+....+++.-|+.+.....+... ...| ...+.|.+...++--=..
T Consensus 118 ~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t 195 (262)
T COG3823 118 ADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQT 195 (262)
T ss_pred hHHhhhhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeee
Confidence 553221111123345566653 455566666566777777766544333221 1122 233344444333322222
Q ss_pred CeEEEEEcCCCcceeEe------------cCCCCCeeEEEEcCCC-CEEEEE
Q 011224 305 NMIYVCKIGENRPIKTF------------AGHQGEVNCVKWDPTG-SLLASC 343 (490)
Q Consensus 305 ~~i~~~~~~~~~~~~~~------------~~h~~~v~~v~~~~~~-~~l~s~ 343 (490)
..|...+..+++.+..+ ..|....+.+++.|++ ++++||
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22222222233322211 1244567889998887 555555
No 473
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.91 E-value=29 Score=36.07 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=45.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEE
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 270 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd 270 (490)
.++++.-+|.|+-++++..||.|++|+........+.....|-..+.|... -|+++.+|+.+.-|.
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnh--gl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNH--GLVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeecc--ceEEEeccchhheee
Confidence 467777789999999999999999998654322222222233344555433 478888888888885
No 474
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=76.66 E-value=93 Score=32.69 Aligned_cols=159 Identities=24% Similarity=0.331 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCe--EEEEecCCCceeeeeccccccEEEEEEcCCCCCC
Q 011224 305 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 382 (490)
Q Consensus 305 ~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~ 382 (490)
..+++.+... ..+..+...+..+.|+|+|..++..+.++. ..+|-+..+. .+..+...+....|+|.+.
T Consensus 43 ~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~-- 113 (620)
T COG1506 43 SSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGD-- 113 (620)
T ss_pred cceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCC--
Q ss_pred CCCCCcEEEE---------EEE-----------------CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE
Q 011224 383 NNPNQQLILA---------SAS-----------------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 383 ~~~~~~~~l~---------sgs-----------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~ 436 (490)
.++. .+. ....+.+.|... ...........+...++++++..++..
T Consensus 114 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (620)
T COG1506 114 ------RIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASI 185 (620)
T ss_pred ------eEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEe
Q ss_pred eCCCc-------EEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECC
Q 011224 437 SLDKS-------MHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 437 s~dg~-------i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d 480 (490)
..+.. ..++...++.+.....+...+..+.|.++|+.++..+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~ 236 (620)
T COG1506 186 RLDDDADPWVTNLYVLIEGNGELESLTPGEGSISKLAFDADGKSIALLGTE 236 (620)
T ss_pred eeccccCCceEeeEEEecCCCceEEEcCCCceeeeeeeCCCCCeeEEeccC
No 475
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=76.27 E-value=1.3e+02 Score=33.09 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.2
Q ss_pred ccceeEEEECCCC------CEEEEEECCCcEEEEecC
Q 011224 142 TSEVCACAWSPAG------SLLASGSGDSTARIWTIA 172 (490)
Q Consensus 142 ~~~V~~~~~sp~~------~~l~sgs~D~~i~~Wd~~ 172 (490)
...|.|+++.++. ++++.|+.|+.+++..+.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~ 618 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLD 618 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEec
Confidence 4578899998875 479999999999999876
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=75.76 E-value=74 Score=30.21 Aligned_cols=142 Identities=22% Similarity=0.338 Sum_probs=77.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCe------EEEEecCC--C--cee-----eeeccccc--------cEEEEEEcCCCCCC
Q 011224 326 GEVNCVKWDPTGSLLASCSDDVT------AKIWNMKQ--D--KYV-----HDLREHSK--------EIYTIRWSPTGSGT 382 (490)
Q Consensus 326 ~~v~~v~~~~~~~~l~s~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~v~~~p~g~~~ 382 (490)
+.+..+.+.|++..+++.+++|. +..+.+.. + ..+ ..++...+ -.-+|++.+++.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-- 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC--
Confidence 45678888866666777777777 55444432 1 001 01111111 122455544443
Q ss_pred CCCCCcEEEEEEECC------CcEEEEeCCCCeEEEEee---------------CCCCCEEEEEECCCCCEEEEEeC---
Q 011224 383 NNPNQQLILASASFD------STVKLWDVELGKLLYSLN---------------GHREPVYSLAFSPTGEYLASGSL--- 438 (490)
Q Consensus 383 ~~~~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~---------------~h~~~v~~l~~spdg~~l~s~s~--- 438 (490)
++++.=.+ ..|+-++.. |+.+..+. .......+|+++|+|+.|.++..
T Consensus 98 -------~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l 169 (326)
T PF13449_consen 98 -------FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL 169 (326)
T ss_pred -------EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence 44444444 567777765 55443321 12356889999999996655432
Q ss_pred --CC--c-------EEEE--EcCC-CeEEE--EEe--------cCCCEEEEEECCCCCEEEEE
Q 011224 439 --DK--S-------MHIW--SLKE-GKIVK--TYT--------GNGGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 439 --dg--~-------i~iw--~~~~-~~~~~--~~~--------~~~~v~~~~~~~~g~~la~~ 477 (490)
|+ . ++|+ +..+ +.... .|. ....+..+++-+++++|+.-
T Consensus 170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 1 4444 4444 32222 222 23468899999999977764
No 477
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.57 E-value=0.22 Score=48.10 Aligned_cols=140 Identities=16% Similarity=0.254 Sum_probs=87.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 328 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 328 v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
.....|-|.+.-++.++.+..+..||-.... .... ..++....++|..++. ..++.+-..+.+.+||+.+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~-n~tg~aldm~wDkegd--------vlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILEL-NPTGKALDMAWDKEGD--------VLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcce-eccc-CCchhHhhhhhccccc--------hhhhhhhcCCCeeechhhh
Confidence 3356788888778888888888888844322 2221 1233445566766554 2445566788999999864
Q ss_pred CeEE-EEeeC-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe-cCCCEEEEEECCCCCEEEEEECC
Q 011224 408 GKLL-YSLNG-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 408 ~~~~-~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~~g~~la~~~~d 480 (490)
..-- ..+.+ |.... +.|++.+..++.|-..|.+.|++-.+.+.+-... +-..+..++|.+.+.. +.++.+
T Consensus 107 eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd 179 (615)
T KOG2247|consen 107 EYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCD 179 (615)
T ss_pred hhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcH
Confidence 3211 11111 22222 6899999999999999999999977654433222 2345889999998743 444433
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=75.15 E-value=90 Score=30.89 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=18.3
Q ss_pred EEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 462 IFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 462 v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|..++..+..+.|.+...++.|.+|++.
T Consensus 192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 192 IVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred eeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 6666666666777777777777777763
No 479
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.99 E-value=49 Score=36.89 Aligned_cols=142 Identities=18% Similarity=0.298 Sum_probs=81.9
Q ss_pred EeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC----CCeE-----EEE
Q 011224 343 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE----LGKL-----LYS 413 (490)
Q Consensus 343 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~----~~~~-----~~~ 413 (490)
-+-|+.+.+|++.++.....+.+....|..|..-....+.+.|.-+++|+.+. --.|.++-+. ++.. .++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~~~ 173 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTSFK 173 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCccccccccee
Confidence 44588899999999777777766667777765543333344444333443332 2234444322 1111 123
Q ss_pred eeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC----CC---e-EEE-------------EE---e--cCCCEEEEEE
Q 011224 414 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK----EG---K-IVK-------------TY---T--GNGGIFEVCW 467 (490)
Q Consensus 414 ~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~----~~---~-~~~-------------~~---~--~~~~v~~~~~ 467 (490)
+.-....|++|....+|+.+.+|- || .+|.+. +| + +-+ ++ . ...+|..++.
T Consensus 174 i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 333345689999888998877765 55 455432 11 1 111 11 1 1235677777
Q ss_pred CCCCCEEEEEECCCcEEEEEe
Q 011224 468 NKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~~ 488 (490)
...-+.|-+=+.-++|.+|++
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred ccccceeeeeccCceEEEEEc
Confidence 666667777777888999986
No 480
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=74.54 E-value=8.1 Score=21.90 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 432 YLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
.++.++.+|.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999887653
No 481
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=74.46 E-value=7.9 Score=21.33 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.1
Q ss_pred EEEEEECCCCCEEEEEECCCcEEEE
Q 011224 462 IFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 462 v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
..+++.+++|+.+++=+.++.|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5678888888888888888888765
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.23 E-value=51 Score=36.76 Aligned_cols=139 Identities=14% Similarity=0.208 Sum_probs=83.1
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEE--------cCCCCEEEEEeCCCeEEEEecCCCce-------e--eee
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW--------DPTGSLLASCSDDVTAKIWNMKQDKY-------V--HDL 363 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~--------~~~~~~l~s~~~dg~i~iwd~~~~~~-------~--~~~ 363 (490)
-+-|+.+++|+...+.....+.+-...|..|.. .|.=++++.-..--.|.|+-+.-... . ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 356788999999987777777777777766653 22223333333334455554321110 0 111
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEe--CCCC---e-E----------------EEEee-CCCCC
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD--VELG---K-L----------------LYSLN-GHREP 420 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd--~~~~---~-~----------------~~~~~-~h~~~ 420 (490)
....-.|.++....+|+ ++-++.||.|.=.- ...+ + + +..+. .+..+
T Consensus 175 ~~dg~~V~~I~~t~nGR----------IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGR----------IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ecCCceEEEEEeccCCc----------EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 12244577777667775 34456677443221 1111 1 0 11233 56779
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 421 VYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 421 v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
|..|+.......|.+-+.-|+|.+|++..
T Consensus 245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeEeccccceeeeeccCceEEEEEccC
Confidence 99999999889999999999999999976
No 483
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=73.53 E-value=1.4e+02 Score=32.34 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=23.9
Q ss_pred CeeEEEEcCC-CCEEEEEeCCCeEEEEec
Q 011224 327 EVNCVKWDPT-GSLLASCSDDVTAKIWNM 354 (490)
Q Consensus 327 ~v~~v~~~~~-~~~l~s~~~dg~i~iwd~ 354 (490)
+...|+|+|. ...||.....|...||++
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEe
Confidence 4667999985 467999999999999998
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=72.61 E-value=1.1e+02 Score=30.85 Aligned_cols=150 Identities=17% Similarity=0.272 Sum_probs=65.9
Q ss_pred CCCEEEEE---eCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC--
Q 011224 212 EGTLLATG---SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-- 286 (490)
Q Consensus 212 ~~~~l~sg---~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-- 286 (490)
++-+|+++ ...+...+.|.+|.....+.........+...++|++++..+ ..+..+|+. |+.+..+....+.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 44456655 345667777777776655443222211156678888776554 677777764 3333333322211
Q ss_pred -eEEEEccCC-ceEE-----------------------EEcCCCeEEEEEcCCCc-ceeE----------ecC---CC--
Q 011224 287 -TLDVDWRNN-VSFA-----------------------TSSTDNMIYVCKIGENR-PIKT----------FAG---HQ-- 325 (490)
Q Consensus 287 -~~~~~~~~~-~~~~-----------------------~~~~d~~i~~~~~~~~~-~~~~----------~~~---h~-- 325 (490)
-.++...++ ..++ .-.....++.|++..-- +... ..+ ..
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Confidence 111211111 1111 11233345556654321 1110 000 00
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 326 GEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 326 ~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
-.++++.+.+ ++.+++|+-.-..|...|.++++..-.+-
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 1378999998 55666666555588888877776654443
No 485
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.61 E-value=51 Score=26.46 Aligned_cols=118 Identities=11% Similarity=0.106 Sum_probs=64.7
Q ss_pred EEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEE---EcC--CCCEEEEEeC
Q 011224 147 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD---WNG--EGTLLATGSY 221 (490)
Q Consensus 147 ~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~---~s~--~~~~l~sg~~ 221 (490)
.-.|.....-|+.++.-|.|.|++..........+..++..+.+ .+.|++++ |.| +...|+.|+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi----------n~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI----------NQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC----------CCceEEEEEEecCCCCCcCEEEEecc
Confidence 34566666678888888999999876543222212222222221 34577765 332 3445666655
Q ss_pred CCeEEEEECCCceeEEecCCCCCEEEEEec---CCCCEEEEEeCCCeEEEEEccCcc
Q 011224 222 DGQARIWSTNGDLKCTLSKHKGPIFSLKWN---KKGDYLLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~---~~~~~l~s~s~D~~v~iwd~~~~~ 275 (490)
..+..||.....-...+.-.+.|.++.+- ....-++..+.+..|.-+|....+
T Consensus 73 -t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 73 -TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred -ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 57889997654333333344566666553 222234444445667766655443
No 486
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=71.25 E-value=1e+02 Score=29.85 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=97.0
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE--EEEEe-CC---CeEE
Q 011224 153 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL--LATGS-YD---GQAR 226 (490)
Q Consensus 153 ~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~--l~sg~-~d---g~i~ 226 (490)
...+++...+.+-+.+||+...... ....+..+...+ ...+.+ .|+. |+.++ .+ ..|+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq-~~~~Gr~NNVDv-------------rygf~l--~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQ-SLPVGRPNNVDV-------------RYGFPL--NGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEE-EE-SS-EEEEEE-------------EEEEEE--TTEEEEEEEEEE-CCCT-EEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEE-eecCCCcceeee-------------ecceec--CCceEEEEEEecCcCCCCeEE
Confidence 4567888888889999998643211 111111111111 112222 2222 33333 22 4689
Q ss_pred EEECCC--ceeEEec-------CCCCCEEEEEec--C-CCC-EEEEEeCCCeEEEEEcc---Cc----ceeEeeeeeccC
Q 011224 227 IWSTNG--DLKCTLS-------KHKGPIFSLKWN--K-KGD-YLLTGSCDKTAIVWDVK---TE----EWKQQFEFHSGP 286 (490)
Q Consensus 227 iw~~~~--~~~~~~~-------~h~~~V~~l~~~--~-~~~-~l~s~s~D~~v~iwd~~---~~----~~~~~~~~~~~~ 286 (490)
+|.+.. .....+. .-...++++|+- | +|. +++....+|.+..|-+. .+ +.++.|.....+
T Consensus 131 ~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~ 210 (381)
T PF02333_consen 131 LFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQP 210 (381)
T ss_dssp EEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-E
T ss_pred EEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcc
Confidence 997643 2222221 112357888873 3 343 67778889999988774 22 234455443322
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCc-----ceeEecC--CCCCeeEEEEc--CCC--CEEEEEeCCCeEEEEecC
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENR-----PIKTFAG--HQGEVNCVKWD--PTG--SLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-----~~~~~~~--h~~~v~~v~~~--~~~--~~l~s~~~dg~i~iwd~~ 355 (490)
--|+.-.....+..+-.+.-|+.++..... .+....+ ....|..|++- .++ -+|+|.-.+++..||+..
T Consensus 211 EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 211 EGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred eEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 222222334556667777778888776432 1212222 24567777774 333 356666678899999976
Q ss_pred C-Cceeeee
Q 011224 356 Q-DKYVHDL 363 (490)
Q Consensus 356 ~-~~~~~~~ 363 (490)
. ..++..|
T Consensus 291 ~~~~~~g~f 299 (381)
T PF02333_consen 291 GPNAYVGSF 299 (381)
T ss_dssp TT--EEEEE
T ss_pred CCCcccceE
Confidence 4 3444433
No 487
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=70.98 E-value=73 Score=27.96 Aligned_cols=47 Identities=26% Similarity=0.472 Sum_probs=34.2
Q ss_pred CEEEEEeCCCeEEEEECCC---ceeEEecCCCCCEEEEEecCCCCEEEEEe
Q 011224 214 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGS 261 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s 261 (490)
..|+.+.....|.+|++.. ...++|..- +.|..+.++..|+||+|--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 4444446667899999763 334555543 8899999999999999853
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.32 E-value=64 Score=29.88 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=48.9
Q ss_pred CcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEe------CCCcEEEEEcCCCeEEEEEec-----CCCEEEEE
Q 011224 398 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS------LDKSMHIWSLKEGKIVKTYTG-----NGGIFEVC 466 (490)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s------~dg~i~iw~~~~~~~~~~~~~-----~~~v~~~~ 466 (490)
..|.+||..+.+=..--.+-.+.|++|.|..+.+++++|. ....+..||+.+..-...-.+ .+.+..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 3588899876543333334557899999987777888775 355788999877643221111 24566666
Q ss_pred ECC-CCC-EEEEE
Q 011224 467 WNK-EGD-KIAAC 477 (490)
Q Consensus 467 ~~~-~g~-~la~~ 477 (490)
+.. |+. ..++|
T Consensus 96 ~~~~d~~~~~~aG 108 (281)
T PF12768_consen 96 FISNDGSNFWVAG 108 (281)
T ss_pred eeccCCceEEEec
Confidence 532 443 44444
No 489
>PRK13613 lipoprotein LpqB; Provisional
Probab=70.12 E-value=1.4e+02 Score=31.05 Aligned_cols=156 Identities=11% Similarity=0.075 Sum_probs=78.3
Q ss_pred cCCCC-CeeEEEEcCCCCEEEEEeCCC-eEEEEecCCCce----eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE
Q 011224 322 AGHQG-EVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 395 (490)
Q Consensus 322 ~~h~~-~v~~v~~~~~~~~l~s~~~dg-~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs 395 (490)
.+... .+.+++.++++..+|..+.++ .+.+..+..+.. ..... ....++.-.|.+.+. ...+-++
T Consensus 358 ~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~~g~--------vWtvd~~ 428 (599)
T PRK13613 358 LGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDGRGD--------LWVVDRD 428 (599)
T ss_pred cCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcCCCC--------EEEecCC
Confidence 34434 678899999999988777666 455544322221 00110 112234444555442 1222111
Q ss_pred CCC--cEEEEeCCCCeEEE-EeeCCCC-CEEEEEECCCCCEEEEEeC---CCcEEEEEcC---CCe--EEE--EE-ecCC
Q 011224 396 FDS--TVKLWDVELGKLLY-SLNGHRE-PVYSLAFSPTGEYLASGSL---DKSMHIWSLK---EGK--IVK--TY-TGNG 460 (490)
Q Consensus 396 ~dg--~i~iwd~~~~~~~~-~~~~h~~-~v~~l~~spdg~~l~s~s~---dg~i~iw~~~---~~~--~~~--~~-~~~~ 460 (490)
.++ .+++..- .++... ......+ .|..+..|+||-.+|.-.. .++|.|=-+. .|. +.. .+ ....
T Consensus 429 ~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~ 507 (599)
T PRK13613 429 PADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELE 507 (599)
T ss_pred CCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCC
Confidence 122 1444432 233221 1112223 7999999999976654332 3455554442 232 111 11 2234
Q ss_pred CEEEEEECCCCCEEEEEE-CCCcEEEEE
Q 011224 461 GIFEVCWNKEGDKIAACF-ANHTVCVLD 487 (490)
Q Consensus 461 ~v~~~~~~~~g~~la~~~-~d~~v~v~~ 487 (490)
.+.+++|..++.+++.+. .++..-+|-
T Consensus 508 ~v~~~~W~~~~sL~Vlg~~~~~~~~v~~ 535 (599)
T PRK13613 508 DVTDMSWAGDSQLVVLGREEGGVQQARY 535 (599)
T ss_pred ccceeEEcCCCEEEEEeccCCCCcceEE
Confidence 588999999999877653 333444443
No 490
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=69.49 E-value=28 Score=25.56 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCEEEEEe-CCCcEEEEEcCC
Q 011224 419 EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE 449 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~ 449 (490)
..-+.|.++|++++|..++ ..+.|++|...+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 3458899999999886655 568899998653
No 491
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=68.71 E-value=12 Score=21.08 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEe
Q 011224 390 ILASASFDSTVKLWDVELGKLLYSL 414 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~~~~~~~~~ 414 (490)
.++.++.+|.+..+|..+|+.++.+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4667888999999999999888764
No 492
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.07 E-value=14 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.2
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEEecC
Q 011224 432 YLASGSLDKSMHIWSLKEGKIVKTYTGN 459 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 459 (490)
.+..++.+|.|.-.|.++|+++..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3556699999999999999999887653
No 493
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=65.71 E-value=1.3e+02 Score=29.01 Aligned_cols=218 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCeEEEEEccCcceeEeeeeec--cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCC-CCeeE
Q 011224 254 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNC 330 (490)
Q Consensus 254 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~ 330 (490)
+..++.+..+|.|.-.|+.++..+-...... ..+..-....+..+..++.++.++..+..++..+-.+.... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc---ccccEEEEEEcCCCCCCCCCCCcEEEEEEEC--CCcEEEEeC
Q 011224 331 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDV 405 (490)
Q Consensus 331 v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~--dg~i~iwd~ 405 (490)
.....++..++.. .++.+...+..++..+-.... ....+..-....++ .+..+.. ++.+.-.|.
T Consensus 148 ~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----------~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 148 PPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG----------TVYVGSDGYDGILYALNA 216 (370)
T ss_pred CcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecc----------eEEEecCCCcceEEEEEc
Q ss_pred CCCeEEEE----eeCCCCCE--EEEEECCC---CCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEE
Q 011224 406 ELGKLLYS----LNGHREPV--YSLAFSPT---GEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAA 476 (490)
Q Consensus 406 ~~~~~~~~----~~~h~~~v--~~l~~spd---g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~ 476 (490)
.+|...+. ...-...+ +.....+. +.-+..++.++.+...+..+|+.+..+... ..-...+-+...
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~-----~~~~~~~~~~~~ 291 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG-----GSVQGSGLYTTP 291 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc-----cEeccCCeeEEe
Q ss_pred EEC-CCcEEEEE
Q 011224 477 CFA-NHTVCVLD 487 (490)
Q Consensus 477 ~~~-d~~v~v~~ 487 (490)
-.. ||.+.++.
T Consensus 292 ~~~~dG~v~~~~ 303 (370)
T COG1520 292 VAGADGKVYIGF 303 (370)
T ss_pred ecCCCccEEEEE
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=65.65 E-value=18 Score=32.52 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=46.8
Q ss_pred EEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeC-C--CcEEEEEcCC--C--eEE---EEEecCCCEEEEEECC
Q 011224 400 VKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL-D--KSMHIWSLKE--G--KIV---KTYTGNGGIFEVCWNK 469 (490)
Q Consensus 400 i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~-d--g~i~iw~~~~--~--~~~---~~~~~~~~v~~~~~~~ 469 (490)
-.+||+.+++...--......+.+-+|-|||++|.+||. + ..|++|+..+ + .-. ..+......-+..--|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 356888776543221122233444567899999999875 2 3588888654 1 111 1112222233555678
Q ss_pred CCCEEEEEECC
Q 011224 470 EGDKIAACFAN 480 (490)
Q Consensus 470 ~g~~la~~~~d 480 (490)
||+.|+.|+..
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 99988888765
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.26 E-value=1.2e+02 Score=28.05 Aligned_cols=115 Identities=11% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCeEEEEEccCcceeEeeeeeccCeEEEEccCCc-eEEEEc------CCCeEEEEEcCCCcceeEecCC-----CCCeeE
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSS------TDNMIYVCKIGENRPIKTFAGH-----QGEVNC 330 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~d~~i~~~~~~~~~~~~~~~~h-----~~~v~~ 330 (490)
-..|.+||..+.+|...-..-.+.|.++.|.++. .++.+. ....+..|+..... ...+.+- .++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 3568999999988877665666788999987444 444432 34456677776543 2223331 367777
Q ss_pred EEEcC-CC-CEEEEEe-CCC--eEEEEecCCCceeee-eccccccEEEEEEcCC
Q 011224 331 VKWDP-TG-SLLASCS-DDV--TAKIWNMKQDKYVHD-LREHSKEIYTIRWSPT 378 (490)
Q Consensus 331 v~~~~-~~-~~l~s~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~p~ 378 (490)
+.+.. |+ ++.+.|. .+| .|..||-.+...+.. .......|..+.+-|-
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 76632 33 3444444 333 466676555444433 2233456666665554
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=63.35 E-value=50 Score=32.92 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=38.3
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE--EEEE------ecCCCEEEEEECCCC
Q 011224 419 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTY------TGNGGIFEVCWNKEG 471 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~--~~~~------~~~~~v~~~~~~~~g 471 (490)
..-+.|+|.|||++|++--..|.|++++..++.. +..+ .+.+++..|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4468899999999888766579999998655432 2111 135678999999984
No 497
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=62.85 E-value=21 Score=19.62 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=19.8
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.|.+|+.++. +++.+..-+.+++|.
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 4777887654 888888889999884
No 498
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=61.40 E-value=51 Score=24.17 Aligned_cols=48 Identities=13% Similarity=0.050 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEE-ECCCcEEEEEee
Q 011224 440 KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~-~~d~~v~v~~~~ 489 (490)
+.|..|+..+-+ ....+-...+.+..+|++++|..+ ...+.|+||..+
T Consensus 36 ~~Vvyyd~~~~~--~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVK--VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeE--EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 345556543322 222333456789999999977765 567899999865
No 499
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=61.03 E-value=2.5e+02 Score=30.97 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=61.7
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecC---CCCCeeEEEEcCCC------CEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTG------SLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
+...++.+-.++.+..+.......+..+.. -+..+.|+++.++. ++++.++.|++++++.+....++..+.
T Consensus 548 nr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls 627 (1205)
T KOG1898|consen 548 NRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLS 627 (1205)
T ss_pred cceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcc
Confidence 344455555555554444433322333322 24568899998765 679999999999999988666655443
Q ss_pred --cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 365 --EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 365 --~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
+-..++.++.+-+..........+++|.+|-.+|.+.=
T Consensus 628 ~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR 667 (1205)
T KOG1898|consen 628 VQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLR 667 (1205)
T ss_pred ccccCCCccceEEEEecccCCccceeEEEEecccccEEEE
Confidence 23334444443332221111122567888888876543
No 500
>PLN02193 nitrile-specifier protein
Probab=60.91 E-value=1.9e+02 Score=29.16 Aligned_cols=94 Identities=13% Similarity=0.128 Sum_probs=43.2
Q ss_pred eEEEEEccCcceeEeeeeeccC-----eEEEEccCCceEEEEcCC-----CeEEEEEcCCCccee--Eec--CCCCCeeE
Q 011224 265 TAIVWDVKTEEWKQQFEFHSGP-----TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIK--TFA--GHQGEVNC 330 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~~--~~~--~h~~~v~~ 330 (490)
.+.+||+.+..|...-.....| -.++....+..++.++.+ +.++.+|..+..-.. .+. .....-.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 4778899888776421110011 111222344555655543 346677765543111 110 00001112
Q ss_pred EEEcCCCCEEEEEeCCC-----eEEEEecCCCce
Q 011224 331 VKWDPTGSLLASCSDDV-----TAKIWNMKQDKY 359 (490)
Q Consensus 331 v~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~ 359 (490)
++. -++++++.|+.++ .+..||+.+...
T Consensus 274 ~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 274 MAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 222 2466777777543 356677665543
Done!