Query 011224
Match_columns 490
No_of_seqs 486 out of 3547
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 03:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 4.7E-50 1.6E-54 395.0 42.4 297 135-489 101-410 (410)
2 1nr0_A Actin interacting prote 100.0 1.5E-48 5.2E-53 404.0 47.7 332 133-489 50-521 (611)
3 3ow8_A WD repeat-containing pr 100.0 2.1E-48 7.1E-53 370.3 42.8 289 136-489 26-320 (321)
4 1got_B GT-beta; complex (GTP-b 100.0 6.9E-48 2.4E-52 370.1 45.0 287 133-487 46-340 (340)
5 1r5m_A SIR4-interacting protei 100.0 7.3E-48 2.5E-52 380.4 45.4 333 140-489 43-424 (425)
6 2ymu_A WD-40 repeat protein; u 100.0 4.6E-47 1.6E-51 390.7 50.7 325 131-487 251-577 (577)
7 1nr0_A Actin interacting prote 100.0 1.3E-47 4.6E-52 396.9 46.7 327 135-489 140-566 (611)
8 2ynn_A Coatomer subunit beta'; 100.0 4.9E-47 1.7E-51 358.3 42.9 291 134-489 5-301 (304)
9 2pbi_B Guanine nucleotide-bind 100.0 9.1E-47 3.1E-51 364.1 43.3 288 133-446 55-354 (354)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-46 7.7E-51 360.2 42.1 294 135-489 8-334 (345)
11 3frx_A Guanine nucleotide-bind 100.0 1E-45 3.5E-50 351.6 45.2 289 136-489 11-316 (319)
12 4gqb_B Methylosome protein 50; 100.0 9.2E-47 3.1E-51 361.9 37.5 293 140-489 28-330 (344)
13 4g56_B MGC81050 protein; prote 100.0 8.1E-47 2.8E-51 364.8 37.1 288 139-489 39-342 (357)
14 2ymu_A WD-40 repeat protein; u 100.0 3.8E-45 1.3E-49 376.4 50.2 325 132-488 211-537 (577)
15 2hes_X YDR267CP; beta-propelle 100.0 8.4E-46 2.9E-50 354.0 41.4 296 134-489 6-327 (330)
16 3iz6_a 40S ribosomal protein R 100.0 4.2E-47 1.4E-51 370.3 32.0 292 134-451 58-377 (380)
17 4ery_A WD repeat-containing pr 100.0 1.1E-43 3.8E-48 336.5 45.4 289 134-489 15-311 (312)
18 1erj_A Transcriptional repress 100.0 5.9E-44 2E-48 349.7 44.8 298 140-489 62-388 (393)
19 1gxr_A ESG1, transducin-like e 100.0 9.3E-44 3.2E-48 339.9 44.0 321 141-490 8-337 (337)
20 2pbi_B Guanine nucleotide-bind 100.0 1.3E-43 4.3E-48 342.2 44.3 280 199-487 62-354 (354)
21 2xzm_R RACK1; ribosome, transl 100.0 4.5E-44 1.6E-48 343.9 39.6 295 133-450 12-341 (343)
22 2pm9_A Protein WEB1, protein t 100.0 3.7E-46 1.3E-50 367.8 24.6 325 141-489 11-413 (416)
23 4aow_A Guanine nucleotide-bind 100.0 4.5E-43 1.6E-47 335.9 43.1 294 135-451 31-339 (340)
24 3iz6_a 40S ribosomal protein R 100.0 2.8E-44 9.7E-49 350.3 33.9 282 199-489 64-374 (380)
25 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.7E-42 9.3E-47 343.7 46.9 318 134-489 110-441 (445)
26 1pgu_A Actin interacting prote 100.0 2.8E-42 9.6E-47 357.4 45.5 328 133-489 151-613 (615)
27 2oaj_A Protein SNI1; WD40 repe 100.0 1E-42 3.5E-47 373.6 43.5 330 137-489 12-604 (902)
28 3dm0_A Maltose-binding peripla 100.0 1.5E-42 5E-47 364.9 43.0 293 136-489 376-692 (694)
29 3zwl_B Eukaryotic translation 100.0 1.2E-41 4.2E-46 329.3 45.3 297 135-489 25-345 (369)
30 2xzm_R RACK1; ribosome, transl 100.0 1.6E-41 5.5E-46 326.2 41.5 280 197-489 17-339 (343)
31 3vl1_A 26S proteasome regulato 100.0 2.5E-42 8.6E-47 341.0 34.7 320 143-489 57-418 (420)
32 3ei3_B DNA damage-binding prot 100.0 6.1E-42 2.1E-46 334.2 37.0 285 135-489 66-381 (383)
33 1pgu_A Actin interacting prote 100.0 6.1E-41 2.1E-45 347.3 45.8 345 133-489 54-571 (615)
34 3v7d_B Cell division control p 100.0 8.3E-41 2.8E-45 334.7 43.9 318 135-487 114-460 (464)
35 3mkq_A Coatomer beta'-subunit; 100.0 4.5E-41 1.5E-45 360.1 44.6 327 135-489 6-385 (814)
36 3ow8_A WD repeat-containing pr 100.0 2.6E-41 8.9E-46 321.3 37.6 246 136-448 74-320 (321)
37 4gqb_B Methylosome protein 50; 100.0 2.1E-41 7E-46 324.7 36.2 252 139-452 79-334 (344)
38 1sq9_A Antiviral protein SKI8; 100.0 2.3E-41 7.8E-46 331.5 37.1 295 135-451 9-397 (397)
39 3sfz_A APAF-1, apoptotic pepti 100.0 9.1E-41 3.1E-45 373.6 46.3 336 135-489 608-1073(1249)
40 2oaj_A Protein SNI1; WD40 repe 100.0 4.2E-41 1.4E-45 361.1 41.6 333 135-488 92-659 (902)
41 3k26_A Polycomb protein EED; W 100.0 1.7E-41 5.9E-46 328.0 32.9 293 136-489 12-365 (366)
42 1k8k_C P40, ARP2/3 complex 41 100.0 6.1E-41 2.1E-45 325.2 36.4 291 137-489 3-360 (372)
43 4aow_A Guanine nucleotide-bind 100.0 2.8E-39 9.7E-44 309.5 45.9 284 196-490 33-337 (340)
44 3sfz_A APAF-1, apoptotic pepti 100.0 3.3E-42 1.1E-46 385.2 29.6 344 134-489 874-1248(1249)
45 2j04_B YDR362CP, TAU91; beta p 100.0 2E-42 6.9E-47 348.3 25.1 322 141-489 132-516 (524)
46 2pm7_B Protein transport prote 100.0 1.6E-40 5.3E-45 312.6 36.1 254 135-448 2-284 (297)
47 3odt_A Protein DOA1; ubiquitin 100.0 3.8E-40 1.3E-44 311.6 39.0 288 133-456 9-303 (313)
48 1sq9_A Antiviral protein SKI8; 100.0 4.6E-40 1.6E-44 322.2 39.8 281 197-489 12-394 (397)
49 4e54_B DNA damage-binding prot 100.0 3.2E-41 1.1E-45 334.8 30.9 287 136-489 113-429 (435)
50 2ynn_A Coatomer subunit beta'; 100.0 5.7E-40 1.9E-44 309.8 37.5 248 234-489 5-258 (304)
51 3i2n_A WD repeat-containing pr 100.0 1.7E-40 5.7E-45 320.1 34.1 293 135-452 11-356 (357)
52 1got_B GT-beta; complex (GTP-b 100.0 1.2E-39 4E-44 312.8 39.3 244 199-489 53-300 (340)
53 4a11_B DNA excision repair pro 100.0 2E-39 6.9E-44 318.3 41.1 342 134-489 35-404 (408)
54 1vyh_C Platelet-activating fac 100.0 4.9E-40 1.7E-44 323.6 36.2 247 234-489 100-368 (410)
55 1gxr_A ESG1, transducin-like e 100.0 1.1E-38 3.9E-43 304.6 43.9 285 138-447 47-335 (337)
56 3dwl_C Actin-related protein 2 100.0 1.3E-41 4.5E-46 331.0 22.8 288 137-488 6-377 (377)
57 3dw8_B Serine/threonine-protei 100.0 4E-40 1.4E-44 327.8 33.9 298 140-489 26-445 (447)
58 2pm7_B Protein transport prote 100.0 2.3E-39 7.9E-44 304.6 36.3 252 199-489 7-284 (297)
59 4g56_B MGC81050 protein; prote 100.0 7.1E-40 2.4E-44 316.2 33.2 252 137-450 89-344 (357)
60 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-39 9E-44 310.9 36.5 256 137-455 56-341 (345)
61 3frx_A Guanine nucleotide-bind 100.0 8.8E-39 3E-43 303.8 39.6 248 196-489 12-266 (319)
62 4aez_A CDC20, WD repeat-contai 100.0 5.3E-39 1.8E-43 315.5 38.6 287 136-489 85-379 (401)
63 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-38 7.8E-43 299.4 40.7 274 198-489 15-295 (313)
64 3gre_A Serine/threonine-protei 100.0 2.4E-40 8.2E-45 328.7 27.9 309 149-487 34-437 (437)
65 3bg1_A Protein SEC13 homolog; 100.0 4.2E-40 1.4E-44 312.5 27.9 255 136-448 7-292 (316)
66 2hes_X YDR267CP; beta-propelle 100.0 5.4E-39 1.8E-43 306.8 33.4 251 140-449 56-328 (330)
67 1yfq_A Cell cycle arrest prote 100.0 1.3E-38 4.5E-43 305.2 35.2 282 137-446 6-321 (342)
68 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-38 6E-43 340.0 39.5 324 134-487 47-420 (814)
69 2pm9_A Protein WEB1, protein t 100.0 9.9E-40 3.4E-44 321.8 26.8 279 203-489 14-336 (416)
70 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-38 4.1E-43 305.3 33.1 303 136-456 5-344 (351)
71 3i2n_A WD repeat-containing pr 100.0 2.1E-38 7.2E-43 305.4 34.1 281 199-489 16-352 (357)
72 4h5i_A Guanine nucleotide-exch 100.0 4.1E-39 1.4E-43 311.8 29.1 288 143-449 15-343 (365)
73 4gga_A P55CDC, cell division c 100.0 3.3E-37 1.1E-41 304.5 42.6 275 203-489 107-394 (420)
74 3gre_A Serine/threonine-protei 100.0 5.1E-39 1.8E-43 319.2 29.4 290 132-446 52-437 (437)
75 3mmy_A MRNA export factor; mRN 100.0 5.2E-38 1.8E-42 303.7 35.8 293 130-448 27-345 (368)
76 1erj_A Transcriptional repress 100.0 8.5E-38 2.9E-42 305.9 37.5 249 141-449 122-389 (393)
77 1r5m_A SIR4-interacting protei 100.0 7.7E-38 2.6E-42 308.6 36.5 278 200-489 44-360 (425)
78 3bg1_A Protein SEC13 homolog; 100.0 7.4E-39 2.5E-43 303.9 27.9 253 198-489 10-292 (316)
79 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-37 5.3E-42 308.4 35.0 293 137-468 128-433 (435)
80 4gga_A P55CDC, cell division c 100.0 1.7E-36 5.7E-41 299.5 41.9 297 130-453 89-399 (420)
81 4ggc_A P55CDC, cell division c 100.0 2.2E-36 7.6E-41 286.5 41.1 276 204-489 28-314 (318)
82 3v7d_B Cell division control p 100.0 9.3E-37 3.2E-41 305.3 40.1 269 204-489 125-420 (464)
83 3vl1_A 26S proteasome regulato 100.0 4.2E-38 1.4E-42 310.7 27.1 284 203-489 58-364 (420)
84 3jrp_A Fusion protein of prote 100.0 7.5E-37 2.6E-41 296.9 35.3 252 135-449 4-287 (379)
85 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-36 3.8E-41 302.2 37.0 268 200-489 132-413 (435)
86 2j04_B YDR362CP, TAU91; beta p 100.0 5.7E-38 1.9E-42 315.9 27.7 295 136-450 201-518 (524)
87 4h5i_A Guanine nucleotide-exch 100.0 6E-37 2.1E-41 296.5 32.4 276 201-489 14-342 (365)
88 1yfq_A Cell cycle arrest prote 100.0 8.2E-37 2.8E-41 292.7 32.6 269 199-482 9-315 (342)
89 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-35 4E-40 295.8 41.2 280 133-449 150-442 (445)
90 2j04_A TAU60, YPL007P, hypothe 100.0 2.7E-38 9.3E-43 310.8 21.4 300 140-479 13-350 (588)
91 4ggc_A P55CDC, cell division c 100.0 4.5E-35 1.5E-39 277.5 42.7 294 130-450 9-316 (318)
92 4ery_A WD repeat-containing pr 100.0 9.6E-36 3.3E-40 281.9 37.8 247 234-489 15-267 (312)
93 4a11_B DNA excision repair pro 100.0 1.7E-35 5.8E-40 290.3 38.3 281 199-489 41-364 (408)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-35 1.2E-39 292.8 40.2 300 142-489 4-390 (450)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-36 6.9E-41 297.2 29.1 281 144-489 36-341 (402)
96 3dm0_A Maltose-binding peripla 100.0 1.4E-35 4.8E-40 311.7 36.8 244 197-489 378-631 (694)
97 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-35 9.1E-40 285.5 34.9 241 200-489 7-273 (372)
98 4e54_B DNA damage-binding prot 100.0 2.3E-36 7.9E-41 299.9 26.3 265 135-453 157-434 (435)
99 3jrp_A Fusion protein of prote 100.0 5.6E-35 1.9E-39 283.7 33.4 256 234-489 3-286 (379)
100 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-34 4.6E-39 277.1 35.1 248 236-489 5-336 (351)
101 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-34 3.8E-39 279.7 34.6 273 198-489 16-335 (355)
102 3dwl_C Actin-related protein 2 100.0 9.1E-37 3.1E-41 296.8 20.0 239 201-488 11-279 (377)
103 3ei3_B DNA damage-binding prot 100.0 4.4E-35 1.5E-39 285.6 31.8 246 139-449 115-382 (383)
104 3mmy_A MRNA export factor; mRN 100.0 1.4E-34 4.8E-39 279.6 33.5 280 198-486 36-342 (368)
105 3dw8_B Serine/threonine-protei 100.0 9.7E-36 3.3E-40 296.2 25.6 274 200-489 27-372 (447)
106 3jro_A Fusion protein of prote 100.0 1.4E-35 4.8E-40 313.8 27.2 251 136-449 3-285 (753)
107 2xyi_A Probable histone-bindin 100.0 2.4E-34 8E-39 285.0 34.1 262 136-450 122-411 (430)
108 4aez_A CDC20, WD repeat-contai 100.0 3.9E-34 1.3E-38 280.8 34.7 247 140-456 132-387 (401)
109 3zwl_B Eukaryotic translation 100.0 2.3E-33 7.9E-38 271.1 38.6 240 199-489 30-303 (369)
110 3vu4_A KMHSV2; beta-propeller 100.0 3.2E-34 1.1E-38 276.4 32.3 278 135-449 12-336 (355)
111 3lrv_A PRE-mRNA-splicing facto 100.0 2E-35 6.8E-40 283.7 23.5 263 149-486 43-329 (343)
112 3k26_A Polycomb protein EED; W 100.0 1.1E-34 3.6E-39 280.4 27.9 266 141-448 68-365 (366)
113 3bws_A Protein LP49; two-domai 100.0 9.9E-33 3.4E-37 273.4 42.1 277 202-489 123-431 (433)
114 2xyi_A Probable histone-bindin 100.0 8.8E-34 3E-38 280.9 34.4 246 236-489 122-409 (430)
115 3jro_A Fusion protein of prote 100.0 2.4E-34 8.3E-39 304.3 25.9 253 198-489 6-284 (753)
116 4gq1_A NUP37; propeller, trans 100.0 2.7E-34 9.3E-39 280.9 23.0 234 204-488 92-387 (393)
117 4gq1_A NUP37; propeller, trans 100.0 8.1E-34 2.8E-38 277.6 25.3 283 137-448 84-388 (393)
118 2aq5_A Coronin-1A; WD40 repeat 100.0 7.7E-33 2.6E-37 271.6 29.7 243 204-489 37-298 (402)
119 2j04_A TAU60, YPL007P, hypothe 100.0 7.3E-34 2.5E-38 279.4 21.8 257 201-488 15-295 (588)
120 2w18_A PALB2, fancn, partner a 100.0 9.2E-32 3.2E-36 248.9 34.5 288 145-489 42-356 (356)
121 1l0q_A Surface layer protein; 100.0 3.8E-30 1.3E-34 251.2 43.9 273 155-459 3-285 (391)
122 3lrv_A PRE-mRNA-splicing facto 100.0 4.8E-33 1.7E-37 267.1 22.6 235 208-489 43-291 (343)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.4E-31 1.2E-35 263.9 34.6 237 202-488 5-337 (450)
124 1l0q_A Surface layer protein; 100.0 6.5E-30 2.2E-34 249.6 39.0 263 214-489 3-274 (391)
125 2w18_A PALB2, fancn, partner a 100.0 3.5E-31 1.2E-35 245.0 25.2 187 212-447 144-355 (356)
126 3bws_A Protein LP49; two-domai 100.0 7.7E-30 2.6E-34 252.6 36.6 286 137-449 118-432 (433)
127 1nir_A Nitrite reductase; hemo 100.0 2.5E-29 8.6E-34 254.9 37.6 312 149-489 144-513 (543)
128 2ecf_A Dipeptidyl peptidase IV 100.0 1.5E-28 5.1E-33 260.4 32.7 334 142-488 36-457 (741)
129 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.2E-28 4E-33 242.4 29.3 301 141-471 61-409 (415)
130 1k32_A Tricorn protease; prote 100.0 7.6E-27 2.6E-31 255.9 33.3 322 133-489 43-460 (1045)
131 1k32_A Tricorn protease; prote 100.0 1.7E-26 6E-31 253.1 33.1 337 134-488 91-500 (1045)
132 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-25 3.8E-30 237.0 30.3 321 145-489 28-434 (706)
133 1nir_A Nitrite reductase; hemo 99.9 1.1E-24 3.9E-29 220.7 35.9 294 135-459 172-524 (543)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.8E-25 6.1E-30 219.7 28.8 272 203-488 64-385 (415)
135 1xfd_A DIP, dipeptidyl aminope 99.9 7.2E-26 2.5E-30 239.0 25.4 313 144-479 18-429 (723)
136 3vgz_A Uncharacterized protein 99.9 1.5E-23 5.2E-28 201.2 35.2 268 202-480 41-334 (353)
137 3u4y_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 199.2 34.5 270 209-489 5-303 (331)
138 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-24 4.2E-29 230.3 29.2 277 201-489 36-412 (741)
139 2ojh_A Uncharacterized protein 99.9 1.7E-24 5.9E-29 201.8 25.2 253 218-481 17-293 (297)
140 1ri6_A Putative isomerase YBHE 99.9 1.7E-23 5.7E-28 199.9 32.6 291 156-472 7-335 (343)
141 3u4y_A Uncharacterized protein 99.9 2.1E-23 7.1E-28 198.6 31.9 277 148-452 3-307 (331)
142 1ri6_A Putative isomerase YBHE 99.9 1.3E-23 4.5E-28 200.6 30.2 265 215-489 7-307 (343)
143 2ojh_A Uncharacterized protein 99.9 1.1E-23 3.8E-28 196.3 27.0 240 134-440 33-293 (297)
144 3o4h_A Acylamino-acid-releasin 99.9 5.5E-24 1.9E-28 218.9 25.1 267 201-487 21-312 (582)
145 2z3z_A Dipeptidyl aminopeptida 99.9 3.3E-23 1.1E-27 218.1 31.0 279 142-451 81-437 (706)
146 1pby_B Quinohemoprotein amine 99.9 9.2E-23 3.2E-27 194.2 29.4 270 214-489 2-309 (337)
147 1xfd_A DIP, dipeptidyl aminope 99.9 3.9E-24 1.3E-28 225.8 21.8 275 203-489 18-392 (723)
148 3vgz_A Uncharacterized protein 99.9 2.1E-21 7.3E-26 186.1 36.0 271 141-440 39-335 (353)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 4.6E-22 1.6E-26 196.2 30.2 253 142-447 36-331 (434)
150 1pby_B Quinohemoprotein amine 99.9 6.6E-22 2.3E-26 188.3 29.8 272 155-458 2-319 (337)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 4.3E-22 1.5E-26 196.4 26.6 245 202-487 37-330 (434)
152 1jmx_B Amine dehydrogenase; ox 99.9 9.1E-22 3.1E-26 188.4 27.7 274 147-489 4-324 (349)
153 3hfq_A Uncharacterized protein 99.9 8.3E-21 2.9E-25 181.9 34.4 248 202-488 40-315 (347)
154 1z68_A Fibroblast activation p 99.9 1.9E-22 6.7E-27 212.7 24.8 314 147-488 20-441 (719)
155 3hfq_A Uncharacterized protein 99.9 6.4E-21 2.2E-25 182.7 31.7 252 140-454 37-324 (347)
156 3o4h_A Acylamino-acid-releasin 99.9 8.9E-22 3.1E-26 202.4 26.9 268 141-449 20-315 (582)
157 3scy_A Hypothetical bacterial 99.9 4.4E-20 1.5E-24 177.9 35.6 268 213-489 13-336 (361)
158 3pe7_A Oligogalacturonate lyas 99.9 1.1E-20 3.8E-25 183.8 29.0 308 135-488 23-380 (388)
159 4a5s_A Dipeptidyl peptidase 4 99.9 1.4E-20 4.8E-25 198.9 27.7 277 144-479 18-382 (740)
160 3scy_A Hypothetical bacterial 99.9 4.1E-19 1.4E-23 171.1 34.4 256 201-468 49-360 (361)
161 1z68_A Fibroblast activation p 99.9 1.9E-21 6.6E-26 205.0 18.5 271 206-489 20-390 (719)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-18 3.7E-23 168.5 29.9 249 141-452 38-344 (365)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.9E-18 1E-22 165.4 32.9 265 215-489 4-340 (365)
164 2oiz_A Aromatic amine dehydrog 99.8 1.3E-18 4.4E-23 167.4 29.4 289 153-472 14-360 (361)
165 3azo_A Aminopeptidase; POP fam 99.8 5.1E-19 1.8E-23 184.7 27.9 281 136-487 17-364 (662)
166 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-17 3.8E-22 158.9 31.7 247 201-489 23-321 (329)
167 1q7f_A NHL, brain tumor CG1071 99.8 3.1E-17 1.1E-21 152.5 33.3 236 200-489 28-279 (286)
168 3c5m_A Oligogalacturonate lyas 99.8 8.2E-19 2.8E-23 170.9 22.9 272 204-488 38-380 (396)
169 3fvz_A Peptidyl-glycine alpha- 99.8 1.6E-17 5.4E-22 157.9 29.9 249 142-448 23-321 (329)
170 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-16 4.3E-21 148.3 33.7 247 140-450 27-281 (286)
171 1jmx_B Amine dehydrogenase; ox 99.8 9.8E-18 3.4E-22 160.2 24.8 261 144-459 44-335 (349)
172 3c5m_A Oligogalacturonate lyas 99.8 8.1E-18 2.8E-22 163.8 23.7 277 143-451 36-386 (396)
173 2dg1_A DRP35, lactonase; beta 99.8 1.3E-16 4.5E-21 151.7 28.7 266 202-480 6-300 (333)
174 2gop_A Trilobed protease; beta 99.8 2.1E-16 7.3E-21 151.0 29.9 255 203-488 16-329 (347)
175 2gop_A Trilobed protease; beta 99.8 3E-16 1E-20 150.0 30.7 258 144-452 16-333 (347)
176 4a5s_A Dipeptidyl peptidase 4 99.8 2.5E-17 8.4E-22 174.0 25.1 318 135-487 49-446 (740)
177 1qks_A Cytochrome CD1 nitrite 99.8 1.8E-15 6.3E-20 152.9 37.6 310 152-489 165-537 (567)
178 3e5z_A Putative gluconolactona 99.8 5.4E-16 1.8E-20 144.9 28.1 233 202-487 28-283 (296)
179 2z2n_A Virginiamycin B lyase; 99.8 8E-14 2.7E-18 129.8 41.9 278 139-489 11-294 (299)
180 2oiz_A Aromatic amine dehydrog 99.8 1.3E-15 4.5E-20 146.3 30.2 270 136-431 45-360 (361)
181 3azo_A Aminopeptidase; POP fam 99.7 2E-16 6.9E-21 165.0 24.6 237 199-488 21-321 (662)
182 2dg1_A DRP35, lactonase; beta 99.7 1.6E-15 5.3E-20 144.2 27.7 266 143-440 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.7 2.6E-15 8.7E-20 157.9 31.8 254 202-489 125-413 (710)
184 2xdw_A Prolyl endopeptidase; a 99.7 3.4E-15 1.2E-19 156.9 30.0 244 140-451 122-416 (710)
185 3pe7_A Oligogalacturonate lyas 99.7 2.4E-15 8.2E-20 146.0 25.2 247 232-489 20-328 (388)
186 3e5z_A Putative gluconolactona 99.7 2E-14 6.8E-19 134.2 29.5 259 135-452 20-289 (296)
187 3dsm_A Uncharacterized protein 99.7 2.7E-14 9.3E-19 135.3 28.6 280 162-467 15-319 (328)
188 2bkl_A Prolyl endopeptidase; m 99.7 1.3E-15 4.5E-20 159.6 21.0 245 139-410 117-400 (695)
189 1rwi_B Serine/threonine-protei 99.7 1.5E-14 5.1E-19 132.9 25.7 235 244-489 25-263 (270)
190 2bkl_A Prolyl endopeptidase; m 99.7 2.7E-15 9.4E-20 157.2 22.4 240 200-489 119-396 (695)
191 3no2_A Uncharacterized protein 99.7 5.2E-14 1.8E-18 129.6 27.8 242 153-459 4-262 (276)
192 1rwi_B Serine/threonine-protei 99.7 2.3E-14 7.8E-19 131.6 25.3 239 203-451 25-266 (270)
193 3no2_A Uncharacterized protein 99.7 4.8E-14 1.7E-18 129.8 26.4 212 212-478 4-231 (276)
194 2qc5_A Streptogramin B lactona 99.6 3E-12 1E-16 119.1 37.2 271 202-489 20-299 (300)
195 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.9E-13 6.5E-18 128.4 28.7 239 202-489 18-298 (314)
196 3sjl_D Methylamine dehydrogena 99.6 2E-13 6.7E-18 129.8 28.3 291 150-470 40-384 (386)
197 3dsm_A Uncharacterized protein 99.6 2.4E-13 8.4E-18 128.7 28.9 253 221-488 15-300 (328)
198 2qc5_A Streptogramin B lactona 99.6 7.6E-12 2.6E-16 116.4 36.7 276 141-448 18-299 (300)
199 1qks_A Cytochrome CD1 nitrite 99.6 2E-12 6.7E-17 130.8 34.5 268 211-489 165-476 (567)
200 1yr2_A Prolyl oligopeptidase; 99.6 1.7E-13 6E-18 144.5 28.1 267 211-489 116-440 (741)
201 2mad_H Methylamine dehydrogena 99.6 4.7E-12 1.6E-16 121.7 35.5 275 150-456 28-357 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-12 3.6E-17 123.3 30.3 244 139-449 14-299 (314)
203 2z2n_A Virginiamycin B lyase; 99.6 9E-12 3.1E-16 115.8 35.1 234 202-488 15-253 (299)
204 3g4e_A Regucalcin; six bladed 99.6 6.5E-12 2.2E-16 117.1 29.7 229 203-479 14-261 (297)
205 2mad_H Methylamine dehydrogena 99.6 5.4E-11 1.8E-15 114.3 36.5 263 210-489 29-349 (373)
206 1yr2_A Prolyl oligopeptidase; 99.5 1.2E-12 4E-17 138.2 25.3 239 202-452 163-444 (741)
207 3hrp_A Uncharacterized protein 99.5 1.2E-11 4.1E-16 120.6 30.6 234 243-488 131-408 (409)
208 3c75_H MADH, methylamine dehyd 99.5 9.2E-12 3.1E-16 120.5 27.4 277 152-457 82-410 (426)
209 3hrp_A Uncharacterized protein 99.5 2.1E-11 7E-16 118.9 29.3 233 202-447 131-408 (409)
210 2ghs_A AGR_C_1268P; regucalcin 99.5 6.8E-11 2.3E-15 111.7 31.1 225 204-480 51-292 (326)
211 1xip_A Nucleoporin NUP159; bet 99.5 2.3E-12 7.9E-17 122.9 19.2 182 244-478 39-232 (388)
212 2qe8_A Uncharacterized protein 99.4 6.7E-12 2.3E-16 119.6 20.7 257 202-481 17-312 (343)
213 3dr2_A Exported gluconolactona 99.4 6.2E-11 2.1E-15 110.9 26.7 230 203-487 46-303 (305)
214 3sjl_D Methylamine dehydrogena 99.4 3.7E-11 1.3E-15 114.1 25.2 267 208-489 39-362 (386)
215 1xip_A Nucleoporin NUP159; bet 99.4 5.6E-12 1.9E-16 120.3 18.1 166 203-380 39-226 (388)
216 3g4e_A Regucalcin; six bladed 99.4 3.8E-10 1.3E-14 105.0 29.6 226 141-437 11-260 (297)
217 3c75_H MADH, methylamine dehyd 99.4 6.9E-11 2.4E-15 114.3 24.5 264 211-489 82-401 (426)
218 3iuj_A Prolyl endopeptidase; h 99.4 2.1E-11 7.3E-16 127.4 22.1 236 240-488 126-403 (693)
219 3iuj_A Prolyl endopeptidase; h 99.4 5.4E-11 1.9E-15 124.3 24.3 242 139-410 125-408 (693)
220 3dr2_A Exported gluconolactona 99.4 1.4E-10 4.7E-15 108.5 24.5 236 132-443 34-301 (305)
221 2ghs_A AGR_C_1268P; regucalcin 99.4 9.7E-10 3.3E-14 103.7 30.1 221 144-437 50-290 (326)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.4E-09 8.2E-14 103.2 32.3 304 153-487 52-375 (376)
223 3hxj_A Pyrrolo-quinoline quino 99.4 5.6E-11 1.9E-15 112.3 20.1 298 147-488 24-322 (330)
224 2hz6_A Endoplasmic reticulum t 99.3 2.5E-14 8.7E-19 137.7 -4.4 257 212-489 8-278 (369)
225 2qe8_A Uncharacterized protein 99.3 1.4E-10 4.9E-15 110.3 21.7 269 143-446 17-318 (343)
226 1yiq_A Quinohemoprotein alcoho 99.3 4.4E-10 1.5E-14 116.8 26.9 305 154-478 70-537 (689)
227 1mda_H Methylamine dehydrogena 99.3 1.3E-10 4.5E-15 110.6 20.4 246 206-470 69-367 (368)
228 1kb0_A Quinohemoprotein alcoho 99.3 6.3E-10 2.1E-14 115.4 27.0 302 154-476 77-536 (677)
229 1kb0_A Quinohemoprotein alcoho 99.3 3.9E-10 1.3E-14 117.0 24.1 269 213-489 77-506 (677)
230 1yiq_A Quinohemoprotein alcoho 99.3 7.3E-10 2.5E-14 115.2 25.8 269 213-489 70-504 (689)
231 2hz6_A Endoplasmic reticulum t 99.2 8.2E-12 2.8E-16 120.1 7.1 203 253-473 8-217 (369)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.9E-08 9.8E-13 95.6 27.8 260 213-489 53-336 (376)
233 1npe_A Nidogen, entactin; glyc 99.1 1.6E-07 5.4E-12 85.7 31.0 246 215-472 3-263 (267)
234 3hxj_A Pyrrolo-quinoline quino 99.1 1.2E-08 4E-13 96.2 22.0 218 213-449 107-324 (330)
235 1mda_H Methylamine dehydrogena 99.1 5E-09 1.7E-13 99.7 19.3 243 224-489 47-345 (368)
236 4a2l_A BT_4663, two-component 99.1 3.6E-06 1.2E-10 89.3 43.3 310 145-489 175-525 (795)
237 4a2l_A BT_4663, two-component 99.1 6.6E-06 2.3E-10 87.3 44.8 314 142-488 214-569 (795)
238 2ece_A 462AA long hypothetical 99.0 1.3E-07 4.6E-12 90.4 26.3 219 252-478 93-399 (462)
239 2iwa_A Glutamine cyclotransfer 99.0 1.3E-07 4.5E-12 85.0 23.6 192 245-489 23-236 (266)
240 1kv9_A Type II quinohemoprotei 99.0 6.1E-08 2.1E-12 100.4 24.0 269 213-489 66-487 (668)
241 2ad6_A Methanol dehydrogenase 98.9 9.3E-07 3.2E-11 89.7 28.2 252 213-477 115-524 (571)
242 1w6s_A Methanol dehydrogenase 98.9 6.6E-07 2.2E-11 90.8 27.0 269 214-489 63-502 (599)
243 1kv9_A Type II quinohemoprotei 98.9 3.5E-07 1.2E-11 94.8 25.2 307 154-479 66-521 (668)
244 2fp8_A Strictosidine synthase; 98.9 7E-07 2.4E-11 83.8 25.0 236 204-489 21-312 (322)
245 2ad6_A Methanol dehydrogenase 98.9 6.4E-07 2.2E-11 90.9 26.2 267 214-489 63-493 (571)
246 3nol_A Glutamine cyclotransfer 98.9 5.8E-07 2E-11 79.8 21.9 180 245-438 45-244 (262)
247 1w6s_A Methanol dehydrogenase 98.9 2.1E-06 7.2E-11 87.1 28.6 258 216-477 124-534 (599)
248 1fwx_A Nitrous oxide reductase 98.8 4.8E-07 1.6E-11 89.7 22.5 183 296-489 103-360 (595)
249 3v9f_A Two-component system se 98.8 3.5E-05 1.2E-09 81.5 38.6 321 143-487 258-608 (781)
250 3v9f_A Two-component system se 98.8 6.2E-05 2.1E-09 79.7 40.1 314 143-487 211-565 (781)
251 1npe_A Nidogen, entactin; glyc 98.8 1.5E-05 5E-10 72.5 30.6 222 256-488 3-236 (267)
252 2ece_A 462AA long hypothetical 98.8 4.8E-07 1.6E-11 86.7 20.8 183 296-488 97-350 (462)
253 2fp8_A Strictosidine synthase; 98.8 7.9E-06 2.7E-10 76.6 28.4 263 138-448 14-312 (322)
254 1fwx_A Nitrous oxide reductase 98.8 5E-07 1.7E-11 89.6 20.5 215 252-477 99-405 (595)
255 1flg_A Protein (quinoprotein e 98.8 4.1E-05 1.4E-09 77.7 34.2 80 397-477 465-547 (582)
256 2p4o_A Hypothetical protein; p 98.8 1.6E-05 5.5E-10 73.9 29.0 225 202-479 32-277 (306)
257 2xbg_A YCF48-like protein; pho 98.7 7E-05 2.4E-09 70.2 33.3 266 202-487 36-319 (327)
258 2iwa_A Glutamine cyclotransfer 98.7 8.6E-06 2.9E-10 73.2 25.4 193 203-407 22-237 (266)
259 3nok_A Glutaminyl cyclase; bet 98.7 5.3E-06 1.8E-10 73.7 23.5 177 288-478 58-253 (268)
260 3nok_A Glutaminyl cyclase; bet 98.7 2.6E-06 8.8E-11 75.7 21.1 179 244-437 56-253 (268)
261 3mbr_X Glutamine cyclotransfer 98.7 7.2E-06 2.4E-10 72.2 23.8 181 243-437 21-222 (243)
262 3nol_A Glutamine cyclotransfer 98.7 4.2E-06 1.4E-10 74.3 22.2 178 288-479 46-244 (262)
263 1k3i_A Galactose oxidase precu 98.7 1.1E-06 3.7E-11 91.1 20.7 269 147-438 190-530 (656)
264 1flg_A Protein (quinoprotein e 98.7 1.6E-05 5.3E-10 80.8 27.6 266 215-489 70-515 (582)
265 3v64_C Agrin; beta propeller, 98.7 0.00011 3.8E-09 69.5 31.8 243 204-457 36-283 (349)
266 3mbr_X Glutamine cyclotransfer 98.6 3E-05 1E-09 68.2 25.1 179 287-479 23-223 (243)
267 3v65_B Low-density lipoprotein 98.6 9.9E-05 3.4E-09 70.9 29.7 242 205-457 80-326 (386)
268 3tc9_A Hypothetical hydrolase; 98.5 9.1E-05 3.1E-09 72.2 28.6 237 203-489 138-429 (430)
269 2xe4_A Oligopeptidase B; hydro 98.5 3.1E-05 1.1E-09 81.3 25.0 196 139-354 169-398 (751)
270 1ijq_A LDL receptor, low-densi 98.5 0.00096 3.3E-08 62.0 33.6 225 223-457 10-246 (316)
271 1k3i_A Galactose oxidase precu 98.4 3E-05 1E-09 80.2 23.5 263 206-479 190-530 (656)
272 2p4o_A Hypothetical protein; p 98.4 0.0003 1E-08 65.1 27.7 217 143-380 32-270 (306)
273 3p5b_L Low density lipoprotein 98.4 0.0014 4.6E-08 63.2 32.5 242 215-466 85-338 (400)
274 3s94_A LRP-6, low-density lipo 98.4 0.0011 3.7E-08 67.7 32.8 327 142-488 39-421 (619)
275 4hw6_A Hypothetical protein, I 98.4 0.00015 5.1E-09 70.7 24.8 234 244-489 140-432 (433)
276 2xe4_A Oligopeptidase B; hydro 98.3 3.9E-05 1.3E-09 80.6 21.3 194 203-447 175-398 (751)
277 3sov_A LRP-6, low-density lipo 98.3 0.0013 4.4E-08 61.2 29.4 226 222-456 12-245 (318)
278 2xbg_A YCF48-like protein; pho 98.3 0.0022 7.4E-08 59.9 34.2 270 143-446 36-319 (327)
279 1ijq_A LDL receptor, low-densi 98.3 0.0021 7.3E-08 59.6 31.4 213 264-487 10-235 (316)
280 3v64_C Agrin; beta propeller, 98.3 0.0011 3.8E-08 62.5 29.2 214 263-487 52-272 (349)
281 3v65_B Low-density lipoprotein 98.3 0.00065 2.2E-08 65.2 27.3 221 256-487 89-315 (386)
282 3qqz_A Putative uncharacterize 98.2 0.0018 6.3E-08 57.6 27.1 200 237-447 21-251 (255)
283 3p5b_L Low density lipoprotein 98.2 0.0035 1.2E-07 60.3 30.8 221 256-487 85-317 (400)
284 4hw6_A Hypothetical protein, I 98.2 0.0029 1E-07 61.5 30.0 233 203-448 140-432 (433)
285 3kya_A Putative phosphatase; s 98.1 0.0032 1.1E-07 61.7 28.6 240 203-489 140-474 (496)
286 3m0c_C LDL receptor, low-densi 98.1 0.0052 1.8E-07 64.3 31.3 226 222-456 403-639 (791)
287 3amr_A 3-phytase; beta-propell 98.1 0.0029 9.9E-08 58.6 25.4 192 253-457 39-272 (355)
288 2ism_A Putative oxidoreductase 98.1 0.0038 1.3E-07 58.9 27.0 58 420-478 269-333 (352)
289 3amr_A 3-phytase; beta-propell 98.1 0.0012 4.2E-08 61.1 22.5 181 297-489 42-262 (355)
290 3sov_A LRP-6, low-density lipo 98.1 0.0071 2.4E-07 56.1 28.2 216 263-488 12-236 (318)
291 2p9w_A MAL S 1 allergenic prot 98.0 0.00091 3.1E-08 61.4 19.7 159 321-489 8-214 (334)
292 3qqz_A Putative uncharacterize 97.9 0.0068 2.3E-07 53.9 23.6 190 286-486 28-249 (255)
293 3m0c_C LDL receptor, low-densi 97.9 0.017 5.9E-07 60.4 30.0 216 262-487 402-629 (791)
294 3kya_A Putative phosphatase; s 97.9 0.023 7.8E-07 55.6 28.9 113 145-272 141-277 (496)
295 1n7d_A LDL receptor, low-densi 97.9 0.00012 4E-09 76.1 13.3 227 223-458 386-623 (699)
296 3tc9_A Hypothetical hydrolase; 97.8 0.00063 2.2E-08 66.2 16.8 152 327-489 138-300 (430)
297 3a9g_A Putative uncharacterize 97.8 0.021 7.1E-07 53.8 26.3 60 419-478 259-330 (354)
298 3ei3_A DNA damage-binding prot 97.7 0.091 3.1E-06 57.5 38.8 321 142-489 553-954 (1158)
299 4a0p_A LRP6, LRP-6, low-densit 97.7 0.07 2.4E-06 54.4 31.3 222 221-453 13-241 (628)
300 2g8s_A Glucose/sorbosone dehyd 97.6 0.054 1.9E-06 50.9 27.9 66 419-484 271-348 (353)
301 1n7d_A LDL receptor, low-densi 97.5 0.00043 1.5E-08 71.8 11.1 215 263-487 385-611 (699)
302 2p9w_A MAL S 1 allergenic prot 97.4 0.02 6.7E-07 52.6 19.2 188 289-485 17-260 (334)
303 2ism_A Putative oxidoreductase 97.3 0.11 3.6E-06 48.9 28.7 100 144-260 32-152 (352)
304 3sre_A PON1, serum paraoxonase 97.2 0.023 7.9E-07 53.2 18.2 154 328-489 52-251 (355)
305 3sre_A PON1, serum paraoxonase 97.2 0.083 2.8E-06 49.4 21.4 168 262-439 81-287 (355)
306 3s94_A LRP-6, low-density lipo 97.1 0.31 1.1E-05 49.5 39.4 307 143-476 84-452 (619)
307 4a0p_A LRP6, LRP-6, low-densit 97.0 0.4 1.4E-05 48.8 44.8 318 143-488 80-506 (628)
308 3pbp_A Nucleoporin NUP82; beta 96.9 0.11 3.7E-06 49.3 19.7 112 327-445 67-208 (452)
309 2vpj_A Kelch-like protein 12; 96.6 0.092 3.2E-06 47.9 17.1 209 264-489 31-277 (301)
310 2vpj_A Kelch-like protein 12; 96.6 0.14 4.6E-06 46.7 18.1 223 212-451 14-280 (301)
311 1cru_A Protein (soluble quinop 96.5 0.32 1.1E-05 47.3 20.7 110 325-438 26-163 (454)
312 3a9g_A Putative uncharacterize 96.5 0.55 1.9E-05 44.0 28.6 101 143-260 29-152 (354)
313 2xzh_A Clathrin heavy chain 1; 96.5 0.49 1.7E-05 43.2 31.4 225 249-483 73-325 (365)
314 3das_A Putative oxidoreductase 96.4 0.32 1.1E-05 45.3 19.0 152 321-477 27-219 (347)
315 3ii7_A Kelch-like protein 7; p 96.4 0.37 1.3E-05 43.8 19.5 221 214-451 13-274 (306)
316 2xn4_A Kelch-like protein 2; s 96.3 0.22 7.7E-06 45.3 17.6 223 213-451 16-278 (302)
317 4asc_A Kelch repeat and BTB do 96.2 0.58 2E-05 42.8 19.9 140 215-359 7-177 (315)
318 2xn4_A Kelch-like protein 2; s 96.2 0.26 8.9E-06 44.8 17.3 211 264-489 30-275 (302)
319 2g8s_A Glucose/sorbosone dehyd 96.2 0.86 3E-05 42.6 25.0 54 327-380 272-335 (353)
320 3ii7_A Kelch-like protein 7; p 96.0 0.35 1.2E-05 44.0 17.3 217 256-489 14-271 (306)
321 2be1_A Serine/threonine-protei 96.0 0.11 3.6E-06 48.3 13.2 193 255-454 11-236 (339)
322 1bpo_A Protein (clathrin); cla 96.0 1.2 4E-05 42.5 33.8 226 248-483 71-324 (494)
323 3ei3_A DNA damage-binding prot 95.9 2.6 9E-05 46.1 40.7 304 152-488 284-634 (1158)
324 1tl2_A L10, protein (tachylect 95.9 0.33 1.1E-05 41.6 14.7 139 327-483 42-203 (236)
325 3qhy_B Beta-lactamase inhibito 95.8 0.63 2.2E-05 41.9 17.3 220 203-449 25-246 (282)
326 4asc_A Kelch repeat and BTB do 95.5 0.6 2.1E-05 42.7 16.8 177 257-451 8-223 (315)
327 1xi4_A Clathrin heavy chain; a 95.4 2.4 8.3E-05 46.7 22.3 196 249-454 72-294 (1630)
328 1zgk_A Kelch-like ECH-associat 95.4 0.94 3.2E-05 41.2 17.5 225 211-451 23-289 (308)
329 3pbp_A Nucleoporin NUP82; beta 95.2 0.34 1.2E-05 46.0 13.6 124 144-269 67-208 (452)
330 2be1_A Serine/threonine-protei 95.2 0.69 2.4E-05 42.8 15.5 188 214-412 11-236 (339)
331 2woz_A Kelch repeat and BTB do 95.1 1.7 5.8E-05 39.6 18.3 140 215-359 18-187 (318)
332 1zgk_A Kelch-like ECH-associat 94.9 0.72 2.4E-05 42.0 15.0 210 264-489 39-286 (308)
333 2woz_A Kelch repeat and BTB do 94.8 1.7 5.6E-05 39.7 17.3 171 265-451 25-233 (318)
334 1tl2_A L10, protein (tachylect 94.6 1.6 5.4E-05 37.4 14.9 98 328-440 90-201 (236)
335 3ott_A Two-component system se 94.2 6 0.00021 41.1 44.5 266 201-487 145-445 (758)
336 3das_A Putative oxidoreductase 93.8 4.3 0.00015 37.6 28.0 71 203-273 33-116 (347)
337 2uvk_A YJHT; unknown function, 93.3 1.2 4.1E-05 41.5 13.3 39 441-480 286-326 (357)
338 1xi4_A Clathrin heavy chain; a 93.3 6 0.00021 43.7 19.6 205 148-374 71-307 (1630)
339 3ott_A Two-component system se 93.0 9.6 0.00033 39.5 42.0 312 143-488 146-500 (758)
340 2xzh_A Clathrin heavy chain 1; 92.7 5.9 0.0002 36.2 27.2 232 209-448 74-331 (365)
341 2zwa_A Leucine carboxyl methyl 92.4 3.5 0.00012 42.5 16.2 191 252-452 396-638 (695)
342 1cru_A Protein (soluble quinop 91.8 9.6 0.00033 36.8 28.4 103 243-345 27-163 (454)
343 2zwa_A Leucine carboxyl methyl 91.6 7.5 0.00026 40.0 17.7 148 211-358 396-579 (695)
344 2uvk_A YJHT; unknown function, 91.4 2.6 8.8E-05 39.1 13.0 49 264-312 168-224 (357)
345 3qhy_B Beta-lactamase inhibito 91.4 7.6 0.00026 34.7 21.6 220 144-407 25-246 (282)
346 1bpo_A Protein (clathrin); cla 90.8 12 0.00039 35.8 28.3 233 208-448 72-330 (494)
347 3sbq_A Nitrous-oxide reductase 90.8 0.6 2E-05 45.8 7.7 90 399-489 299-407 (638)
348 3sbq_A Nitrous-oxide reductase 89.8 1.1 3.8E-05 44.0 8.6 98 371-477 326-452 (638)
349 3s25_A Hypothetical 7-bladed b 88.8 13 0.00045 33.5 25.1 234 211-478 23-280 (302)
350 2wg3_C Hedgehog-interacting pr 86.5 24 0.00083 34.0 26.7 104 244-347 15-160 (463)
351 3s25_A Hypothetical 7-bladed b 81.2 31 0.001 31.1 22.2 139 208-357 59-217 (302)
352 4gq2_M Nucleoporin NUP120; bet 77.1 12 0.00042 39.9 10.8 37 420-456 237-273 (950)
353 3zwu_A Alkaline phosphatase PH 68.0 23 0.00079 35.3 9.6 58 420-477 477-548 (592)
354 3b7f_A Glycosyl hydrolase, BNR 67.0 81 0.0028 29.3 25.6 50 214-264 23-77 (394)
355 4a9v_A PHOX; hydrolase, beta-p 66.7 26 0.00088 34.7 9.3 60 419-478 476-549 (592)
356 4hvt_A Ritya.17583.B, post-pro 65.6 1.2E+02 0.0043 30.9 21.2 225 250-487 137-427 (711)
357 4gq2_M Nucleoporin NUP120; bet 60.2 12 0.00041 40.0 6.3 37 327-363 237-273 (950)
358 3f7f_A Nucleoporin NUP120; nuc 56.1 20 0.00069 36.5 6.7 38 419-458 222-259 (729)
359 4fhn_B Nucleoporin NUP120; pro 55.6 8.8 0.0003 42.1 4.4 38 420-457 239-276 (1139)
360 4fhn_B Nucleoporin NUP120; pro 49.1 14 0.00046 40.6 4.5 37 327-363 239-275 (1139)
361 3f7f_A Nucleoporin NUP120; nuc 45.2 30 0.001 35.3 5.9 36 327-364 223-258 (729)
362 3b7f_A Glycosyl hydrolase, BNR 44.7 1.9E+02 0.0065 26.6 26.3 75 202-277 55-151 (394)
363 2wg3_C Hedgehog-interacting pr 35.5 3E+02 0.01 26.3 27.4 51 203-253 15-79 (463)
364 4a9v_A PHOX; hydrolase, beta-p 34.4 1.4E+02 0.0049 29.5 8.6 38 399-436 510-548 (592)
365 3zwu_A Alkaline phosphatase PH 31.2 2E+02 0.0068 28.6 9.3 37 400-436 511-548 (592)
366 3q6k_A 43.2 kDa salivary prote 25.5 4.1E+02 0.014 24.6 23.2 163 265-437 124-342 (381)
367 3uc1_A DNA gyrase subunit A; D 24.0 4E+02 0.014 24.0 23.4 141 336-487 108-276 (327)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-50 Score=395.05 Aligned_cols=297 Identities=29% Similarity=0.503 Sum_probs=261.6
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...+.+|..+|++++|+|++.+|+||+.|++|++||+.++... +. ..+|...|.+++|+|+++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------~~----l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------RT----LKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------EE----ECCCSSCEEEEEECTTSS
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------EE----EeccCCcEEEEEEcCCCC
Confidence 4578899999999999999999999999999999999876421 11 234678899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+|++|+.|++|+|||... .....+.+|...|++++|+|++++|++|+.|++|++||++++.+
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~----------------- 226 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----------------- 226 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-----------------
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------------
Confidence 999999999999999875 45667889999999999999999999999999999999987643
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
+..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.+...+..|...|.++
T Consensus 227 ------------------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 227 ------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 282 (410)
T ss_dssp ------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred ------------------------EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEE
Confidence 23456788899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCC-----------CCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 011224 374 RWSPTGSGTN-----------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 374 ~~~p~g~~~~-----------~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
+|+|++.... ......+|++|+.||+|++||++++.++..+.+|...|++++|+|+|++|++|+.||+|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i 362 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 9999742100 00012379999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 443 HIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 443 ~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++||+.+++.+.++.++. .|++++|+|++.+||+|+.|++|+||++|
T Consensus 363 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999888887654 59999999999999999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-48 Score=404.04 Aligned_cols=332 Identities=23% Similarity=0.348 Sum_probs=280.3
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
....+|.+|...|++++|||+|++||||+.|++|+|||+.++... .... ...|...|.+++|+|+
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-----------~~~~----~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-----------LKTT----IPVFSGPVKDISWDSE 114 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-----------EEEE----EECSSSCEEEEEECTT
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-----------eeEe----ecccCCceEEEEECCC
Confidence 445788999999999999999999999999999999998654311 0111 2235678999999999
Q ss_pred CCEEEEEeCC----CeEEEEECCCceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 213 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 213 ~~~l~sg~~d----g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
|++|++++.+ +.|++|+.. .....+.+|...|++++|+|++. .|++|+.|++|++||..++++...+..|...+
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V 193 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 193 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred CCEEEEEECCCCceeEEEEeeCC-CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCce
Confidence 9999999875 489999853 44557889999999999999987 59999999999999999998888999999999
Q ss_pred EEEEccCC-ceEEEEcCCCeEEEEEcCCCcceeEec-------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 288 LDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 288 ~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
.++.|.++ ..+++++.|++|++|+...+..+..+. +|.+.|.+++|+|++++|++|+.|++|+|||+.++++
T Consensus 194 ~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 194 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 99999754 568899999999999999888887774 7999999999999999999999999999999987765
Q ss_pred ee-------------------------------------------eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 360 VH-------------------------------------------DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 360 ~~-------------------------------------------~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
+. .+.+|...|.+++|+|++. +|++++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~---------~l~s~s~ 344 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK---------TLFSADA 344 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC---------EEEEEeC
Confidence 43 2346888999999999986 7899999
Q ss_pred CCcEEEEeCCCCeEEEEe-e------------------------------------------------------------
Q 011224 397 DSTVKLWDVELGKLLYSL-N------------------------------------------------------------ 415 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~-~------------------------------------------------------------ 415 (490)
|++|++||+.++.....+ .
T Consensus 345 D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 424 (611)
T 1nr0_A 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 424 (611)
T ss_dssp TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS
T ss_pred CCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCc
Confidence 999999998766443221 0
Q ss_pred ---------------------CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE--EEEEecCCCEEEEEECCCCC
Q 011224 416 ---------------------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYTGNGGIFEVCWNKEGD 472 (490)
Q Consensus 416 ---------------------~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~--~~~~~~~~~v~~~~~~~~g~ 472 (490)
.|...+++++|+|||++||+|+.|++|++|++.++.+ +....+...|++++|+|+|+
T Consensus 425 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~ 504 (611)
T 1nr0_A 425 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA 504 (611)
T ss_dssp CEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred EEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence 1234578899999999999999999999999988754 34434456799999999999
Q ss_pred EEEEEECCCcEEEEEee
Q 011224 473 KIAACFANHTVCVLDFR 489 (490)
Q Consensus 473 ~la~~~~d~~v~v~~~~ 489 (490)
+||+++.|++|++|++.
T Consensus 505 ~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 505 FLVATDQSRKVIPYSVA 521 (611)
T ss_dssp EEEEEETTSCEEEEEGG
T ss_pred EEEEEcCCCCEEEEEcC
Confidence 99999999999999974
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-48 Score=370.31 Aligned_cols=289 Identities=22% Similarity=0.388 Sum_probs=255.7
Q ss_pred eeccccccceeEEEECCC----CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 136 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~----~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
..+.+|.++|++++|+|+ +.+|+|||.|++|+||++.++.. .... ...+|...|.+++|++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-----------~~~~----~l~gh~~~v~~~~~~~ 90 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-----------DLQW----SLEGHQLGVVSVDISH 90 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-----------EEEE----EECCCSSCEEEEEECS
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-----------eeee----eeccCCCCEEEEEECC
Confidence 456799999999999985 56999999999999999865321 1111 2235678899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 212 EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
++.++++|+.|++|++||+.. .....+..|...+++++|+|++++|++|+.|++|++||++++...
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~------------- 157 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE------------- 157 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-------------
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-------------
Confidence 999999999999999999864 456678889999999999999999999999999999998876432
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccE
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 370 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 370 (490)
..+..|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|..+|
T Consensus 158 ----------------------------~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v 209 (321)
T 3ow8_A 158 ----------------------------YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209 (321)
T ss_dssp ----------------------------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC
T ss_pred ----------------------------EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce
Confidence 2344567789999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
.+++|+|++. +|++|+.||.|++||++.++.+..+.+|...|++++|+|++++|++|+.|++|++||+.++
T Consensus 210 ~~l~~spd~~---------~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 210 RSLTFSPDSQ---------LLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp CEEEECTTSC---------EEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred eEEEEcCCCC---------EEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 9999999986 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 451 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 451 ~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+++.++.++ ..|++++|+|+|++|++++.|++|+|||.-
T Consensus 281 ~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999998765 469999999999999999999999999963
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-48 Score=370.06 Aligned_cols=287 Identities=23% Similarity=0.391 Sum_probs=253.9
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
....+|++|.+.|++++|+|++++|+||+.|++|++||+.++.. +..+ ..+...|.+++|+|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-------------~~~~----~~~~~~v~~~~~s~~ 108 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-------------VHAI----PLRSSWVMTCAYAPS 108 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-------------EEEE----ECSSSCEEEEEECTT
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-------------ceEe----ecCCccEEEEEECCC
Confidence 34578999999999999999999999999999999999876531 1111 234678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCc-----eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 213 GTLLATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
+++|++|+.|+.|++|+.... ....+.+|.+.|.++.|++++ .+++++.|++|++||+.++..
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~----------- 176 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ----------- 176 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE-----------
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE-----------
Confidence 999999999999999997642 345678999999999999876 589999999999999887642
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
+..+.+|.+.|.+++|+|++++|++|+.|++|++||++++.++..+..|.
T Consensus 177 ------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~ 226 (340)
T 1got_B 177 ------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226 (340)
T ss_dssp ------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS
T ss_pred ------------------------------EEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc
Confidence 23466789999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC--CCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spdg~~l~s~s~dg~i~iw 445 (490)
..|.+++|+|++. +|++|+.||+|++||+++++.+..+.. +...|++++|+|+|++|++|+.|+.|++|
T Consensus 227 ~~v~~v~~~p~~~---------~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vw 297 (340)
T 1got_B 227 SDINAICFFPNGN---------AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297 (340)
T ss_dssp SCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCEEEEEEcCCCC---------EEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEE
Confidence 9999999999986 799999999999999999988877653 33579999999999999999999999999
Q ss_pred EcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 446 SLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 446 ~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
|+.+++.+..+.++ ..|.+++|+|+|.+||+|+.|++|+|||
T Consensus 298 d~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999998888775 4699999999999999999999999997
No 5
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-48 Score=380.43 Aligned_cols=333 Identities=26% Similarity=0.535 Sum_probs=292.4
Q ss_pred ccccceeEEEECCCCC-EEEEEECCCcEEEEec----CCCCCCCCCCCCCceeEEEEeeeccc------ccCCCCeEEEE
Q 011224 140 GHTSEVCACAWSPAGS-LLASGSGDSTARIWTI----ADGTSNGGAQNGPLNVLVLKHVKGRT------NEKSKDVTTLD 208 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~V~~~~ 208 (490)
.|.++|++++|+|+++ +||+|+.|+.|++|++ .++.... .......+.... ..|...|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW-------KLTIIAELRHPFALSASSGKTTNQVTCLA 115 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE-------EEEEEEEEECCCCCC------CBCEEEEE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc-------cccccccccccccccccccCCCCceEEEE
Confidence 4669999999999999 9999999999999999 6554210 000111111111 12466899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC--
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-- 286 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-- 286 (490)
|+|++++|++|+.||.|++|+..+.....+..|..+|++++|+|++++|++++.|+.|++||+.++.....+..+...
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 999999999999999999999888888889999999999999999999999999999999999999888888777665
Q ss_pred -------------eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEe
Q 011224 287 -------------TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353 (490)
Q Consensus 287 -------------~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd 353 (490)
+.++.|.++..+++++.++.|++|++....++..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 7778888788899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEE
Q 011224 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l 433 (490)
+.+++.+..+..|...+.+++|+|++ +|++++.||.|++||+++++.+..+..|..+|++++|+|++++|
T Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~~~~~----------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 345 (425)
T 1r5m_A 276 GGNGNSQNCFYGHSQSIVSASWVGDD----------KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKY 345 (425)
T ss_dssp SSSBSCSEEECCCSSCEEEEEEETTT----------EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEE
T ss_pred CCCCccceEecCCCccEEEEEECCCC----------EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEE
Confidence 99999999998999999999999976 58899999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCe--------------------EEEEEecC--C-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 434 ASGSLDKSMHIWSLKEGK--------------------IVKTYTGN--G-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 434 ~s~s~dg~i~iw~~~~~~--------------------~~~~~~~~--~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++|+.||.|++|++.+++ ++..+..+ . .|.+++|+|+|++||+++.|+.|+||+++
T Consensus 346 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999999999888 78888776 5 89999999999999999999999999985
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.6e-47 Score=390.68 Aligned_cols=325 Identities=30% Similarity=0.547 Sum_probs=291.5
Q ss_pred CCCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 131 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 131 ~~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
....+..+.+|...|++++|+|++++|++++.|+.|++|+.... .+..+ .+|...|.+++|+
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~h~~~v~~~~~~ 312 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVWGVAFS 312 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--------------EEEEE----CCCSSCEEEEEEC
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--------------EEEEE----ecCCCCeEEEEEC
Confidence 34456678899999999999999999999999999999996421 11222 3457789999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 211 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
|++++|++++.|+.|++|+..+.....+.+|..+|++++|+|++.+|++|+.|++|++||. +++....+..|..++.++
T Consensus 313 ~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~ 391 (577)
T 2ymu_A 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV 391 (577)
T ss_dssp TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEE
Confidence 9999999999999999999998888889999999999999999999999999999999995 567778888899999999
Q ss_pred EccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc
Q 011224 291 DWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 369 (490)
Q Consensus 291 ~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 369 (490)
.|.+ ...+++++.|+.|++|+. ..+.+..+.+|...|.+++|+|++++|++++.|++|++||. +++.+..+..|...
T Consensus 392 ~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~ 469 (577)
T 2ymu_A 392 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 469 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSC
T ss_pred EECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCC
Confidence 9865 456788999999999996 45677889999999999999999999999999999999996 56778888999999
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
|.+++|+|++. +|++++.|+.|++||. +++++..+.+|...|++|+|+|+|++||+|+.||.|+|||. +
T Consensus 470 v~~~~~spd~~---------~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~ 538 (577)
T 2ymu_A 470 VRGVAFSPDGQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 538 (577)
T ss_dssp EEEEEECTTSC---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEEEEEcCCCC---------EEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-C
Confidence 99999999986 8999999999999995 68889999999999999999999999999999999999996 6
Q ss_pred CeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 450 GKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 450 ~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
++++.++.++. .|++++|+|||++|++++.|++|+|||
T Consensus 539 ~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 78888887754 699999999999999999999999997
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-47 Score=396.92 Aligned_cols=327 Identities=19% Similarity=0.322 Sum_probs=271.3
Q ss_pred eeeccccccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...+.+|...|++++|+|++. +|+||+.|++|++||..++. .... ..+|...|.+++|+|+|
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-------------~~~~----l~~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-------------FKST----FGEHTKFVHSVRYNPDG 202 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-------------EEEE----ECCCSSCEEEEEECTTS
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-------------Eeee----eccccCceEEEEECCCC
Confidence 456889999999999999987 69999999999999975432 1122 23467889999999999
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEEec-------CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee--
Q 011224 214 TLLATGSYDGQARIWSTN-GDLKCTLS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-- 283 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~-~~~~~~~~-------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-- 283 (490)
++|++|+.|++|+||+.. +.....+. +|.+.|++++|+|++.+|++|+.|++|++||+.++++...+..+
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 999999999999999965 44444553 79999999999999999999999999999999999888777543
Q ss_pred -ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee
Q 011224 284 -SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 362 (490)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 362 (490)
......+.| ....+++++.|+.+++|+.....+...+.+|...|++++|+|+|++|++++.|++|++||+.++.....
T Consensus 283 ~~~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 283 IEDQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp GGGCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred ccceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 233455556 556788999999999999998888888999999999999999999999999999999999987655433
Q ss_pred e-cccccc------------------------------------------------------------------------
Q 011224 363 L-REHSKE------------------------------------------------------------------------ 369 (490)
Q Consensus 363 ~-~~~~~~------------------------------------------------------------------------ 369 (490)
+ ..|...
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 2 122222
Q ss_pred ---------EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE--EEEeeCCCCCEEEEEECCCCCEEEEEeC
Q 011224 370 ---------IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 370 ---------i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
+.+++|+|++. +|++|+.|++|++||+..+.. +.. .+|...|++|+|||+|++||+++.
T Consensus 442 ~~~~~~~~~v~~va~spdg~---------~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~ 511 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDKQ---------FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQ 511 (611)
T ss_dssp EEEEECSSCEEEEEECTTSC---------EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeecCCCceEEEEeCCCC---------EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcC
Confidence 34555555554 789999999999999987654 233 679999999999999999999999
Q ss_pred CCcEEEEEcCC-CeEEEE--Ee-cCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 439 DKSMHIWSLKE-GKIVKT--YT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 439 dg~i~iw~~~~-~~~~~~--~~-~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|++|++|++.+ ++++.. +. +...|++++|+|+|++||+|+.|++|+|||+.
T Consensus 512 d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECC
Confidence 99999999987 665443 23 34569999999999999999999999999974
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.9e-47 Score=358.26 Aligned_cols=291 Identities=23% Similarity=0.347 Sum_probs=249.7
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...+|.+|.+.|++++|||++++|+||+.||+|++||+.++.. ++.+ ..+..+|.+++|+|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------------~~~~----~~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------------VRSI----QVTETPVRAGKFIARK 67 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEE----ECCSSCEEEEEEEGGG
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------eEEe----eccCCcEEEEEEeCCC
Confidence 3467999999999999999999999999999999999876531 1222 2346789999999999
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 214 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
++|++|+.|+.|++|+.. +.....+.+|.+.|++++|+|++.+|++|+.|++|++||++++..
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---------------- 131 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---------------- 131 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE----------------
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc----------------
Confidence 999999999999999986 456678899999999999999999999999999999999876421
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeeec-cccccE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEI 370 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i 370 (490)
....+.+|...|.+++|+| ++.+|++|+.|++|++||+.+......+. .+...+
T Consensus 132 ------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v 187 (304)
T 2ynn_A 132 ------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187 (304)
T ss_dssp ------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCE
T ss_pred ------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcE
Confidence 1235678999999999999 67899999999999999998877665554 455788
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
..+.|+|.... .+|++|+.|++|++||+++++++.++.+|...|++++|+|++++|++|+.||+|++||+.++
T Consensus 188 ~~~~~~~~~~~-------~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 188 NYVDYYPLPDK-------PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEEECCSTTC-------CEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEEEcCCC-------CEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999875321 27999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecC-CCEEEEEECCCCC--EEEEEECCCcEEEEEee
Q 011224 451 KIVKTYTGN-GGIFEVCWNKEGD--KIAACFANHTVCVLDFR 489 (490)
Q Consensus 451 ~~~~~~~~~-~~v~~~~~~~~g~--~la~~~~d~~v~v~~~~ 489 (490)
++++++..+ ..+++++|+|+|. ++|+|+.|+ +.+|++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence 999998764 5699999999985 577777665 6677653
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9.1e-47 Score=364.14 Aligned_cols=288 Identities=24% Similarity=0.414 Sum_probs=257.2
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
....+|.+|.+.|++++|+|++++|+|||.|++|++||..++.. ...+ ..+...|.+++|+|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-------------~~~~----~~~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------------EHAV----TMPCTWVMACAYAPS 117 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------------EEEE----ECSSSCCCEEEECTT
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-------------ceEE----ecCCCCEEEEEECCC
Confidence 34578999999999999999999999999999999999865431 1111 124567999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC-------ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc
Q 011224 213 GTLLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~-------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 285 (490)
|.+|++|+.|+.+++|+... .....+.+|.+.|.+++|+|++.+|++|+.|++|++||+++++.+..+..|..
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~ 197 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA 197 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Confidence 99999999999999998643 23456778999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccC---CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee
Q 011224 286 PTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 362 (490)
Q Consensus 286 ~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 362 (490)
.+.++.+.. ...+++++.|+.|++|++..+.++..+.+|...|++++|+|++.+|++|+.|++|++||++.++.+..
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~ 277 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI 277 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 998888753 36899999999999999999999999999999999999999999999999999999999998877665
Q ss_pred eccc--cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC
Q 011224 363 LREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 363 ~~~~--~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
+..+ ...+.+++|+|++. +|++|+.|++|++||+.+++.+..+.+|...|++++|+|+|++||+|+.|+
T Consensus 278 ~~~~~~~~~~~~~~~s~~g~---------~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSLSGR---------LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ECCTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EcCCCcccceeEEEEeCCCC---------EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 5433 34789999999986 899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEE
Q 011224 441 SMHIWS 446 (490)
Q Consensus 441 ~i~iw~ 446 (490)
+|+||+
T Consensus 349 ~v~vW~ 354 (354)
T 2pbi_B 349 TLRVWA 354 (354)
T ss_dssp EEEEEC
T ss_pred CEEecC
Confidence 999995
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=360.22 Aligned_cols=294 Identities=29% Similarity=0.523 Sum_probs=245.5
Q ss_pred eeecccccc-ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTS-EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~-~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
+.+|.+|.. .|.+++|+|+|++||||+.|++|+||++.++.. .. .. ....+|...|.+++|+|++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-----------~~-~~--~~~~~h~~~v~~~~~sp~g 73 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----------IC-KS--VLSEGHQRTVRKVAWSPCG 73 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-----------EE-EE--EECSSCSSCEEEEEECTTS
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-----------ee-ee--eeccccCCcEEEEEECCCC
Confidence 467889988 999999999999999999999999999865421 00 00 1123567889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 214 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
++|++|+.|++++||+.... ....+.+|.++|++++|+|++++|++|+.|++|++||+.++...
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~------------- 140 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY------------- 140 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE-------------
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe-------------
Confidence 99999999999999997653 35678899999999999999999999999999999998764311
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc--eeeeeccccc
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSK 368 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~ 368 (490)
..+..+.+|...|.+++|+|++++|++|+.|++|++||..++. +...+.+|..
T Consensus 141 -------------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~ 195 (345)
T 3fm0_A 141 -------------------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195 (345)
T ss_dssp -------------------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred -------------------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC
Confidence 1123567899999999999999999999999999999998775 4567889999
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC---------------CeEEEEeeC-CCCCEEEEEECCCCCE
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL---------------GKLLYSLNG-HREPVYSLAFSPTGEY 432 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~---------------~~~~~~~~~-h~~~v~~l~~spdg~~ 432 (490)
.|.+++|+|++. +|++|+.||+|++|+... .+++..+.+ |...|++++|+|++.+
T Consensus 196 ~v~~l~~sp~g~---------~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 266 (345)
T 3fm0_A 196 TVWSLAFDPSGQ---------RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA 266 (345)
T ss_dssp CEEEEEECTTSS---------EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC
T ss_pred ceEEEEECCCCC---------EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE
Confidence 999999999986 899999999999999632 134555655 8889999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCe--------EEEE-Eec-CCCEEEEEECCCC-CEEEEEECCCcEEEEEee
Q 011224 433 LASGSLDKSMHIWSLKEGK--------IVKT-YTG-NGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 433 l~s~s~dg~i~iw~~~~~~--------~~~~-~~~-~~~v~~~~~~~~g-~~la~~~~d~~v~v~~~~ 489 (490)
|++++.|+.|++|+...+. +... ..+ ...|++++|+|++ .+||+|+.|++|++|+++
T Consensus 267 l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 267 LATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 9999999999999987542 1111 123 3469999999998 599999999999999986
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1e-45 Score=351.65 Aligned_cols=289 Identities=27% Similarity=0.459 Sum_probs=249.3
Q ss_pred eeccccccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 136 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
.+|.+|.+.|++++|+|++ .+|+|||.|++|++|++...... ....+.. ..+|...|.+++|+|+++
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~--------~~~~~~~----~~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK--------FGVPVRS----FKGHSHIVQDCTLTADGA 78 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE--------EEEEEEE----EECCSSCEEEEEECTTSS
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc--------ccccceE----EeCCcccEEEEEECCCCC
Confidence 5789999999999999975 89999999999999998642210 0111222 235678899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+|++|+.|++|+|||+.. .....+.+|..+|.+++|+|++.+|++|+.|++|++||++..
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~------------------- 139 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ------------------- 139 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-------------------
T ss_pred EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------
Confidence 999999999999999864 456688999999999999999999999999999999998532
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC------CCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT------GSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
.+..+.+|...|.+++|+|. +.+|++++.|++|++||+++.+....+.+|.
T Consensus 140 -----------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~ 196 (319)
T 3frx_A 140 -----------------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196 (319)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC
T ss_pred -----------------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC
Confidence 12345678888999999985 4589999999999999999999989999999
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
..|.+++|+|++. +|++|+.||.|++||+.+++.+..+..+ ..|.+++|+|++.+|++++.+ .|++|++
T Consensus 197 ~~v~~~~~sp~g~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~ 265 (319)
T 3frx_A 197 SNINTLTASPDGT---------LIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSL 265 (319)
T ss_dssp SCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEE
T ss_pred CcEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEe
Confidence 9999999999986 8999999999999999999999998854 689999999999999998865 5999999
Q ss_pred CCCeEEEEEec---------CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 448 KEGKIVKTYTG---------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 448 ~~~~~~~~~~~---------~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
..+.++..+.. ...+.+++|+|+|++|++|+.|++|+|||+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 266 DPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp TTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 98887776642 2458999999999999999999999999985
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.2e-47 Score=361.87 Aligned_cols=293 Identities=20% Similarity=0.304 Sum_probs=234.8
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
.|...|.+++|+|||++|++++ |+++++||........ ....+.. ........+...|.+++|+|++ .|++|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~v~~~~~s~d~-~l~~~ 99 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKD-PCAAPNE-----GFCSAGVQTEAGVADLTWVGER-GILVA 99 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESS-GGGTTCG-----GGCSEEEEESSCEEEEEEETTT-EEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecc-ccccCCc-----ceeeeeeccCCCEEEEEEeCCC-eEEEE
Confidence 4777899999999999999888 7888888732110000 0000000 0000011224579999999985 68899
Q ss_pred eCCCeEEEEECCCc-e----eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 220 SYDGQARIWSTNGD-L----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 220 ~~dg~i~iw~~~~~-~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
+.||+|+|||+... . ...+.+|.+.|++|+|+|++++|++|+.|++|++||+.+++.
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~------------------ 161 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV------------------ 161 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred ECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE------------------
Confidence 99999999997643 2 224568999999999999999999999999999999987643
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeeec--cccccEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIY 371 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~ 371 (490)
+..+.+|.+.|.+++|+|++. +|++|+.|++|+|||+++++.+..+. .+...+.
T Consensus 162 -----------------------~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 218 (344)
T 4gqb_B 162 -----------------------LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT 218 (344)
T ss_dssp -----------------------EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE
T ss_pred -----------------------EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce
Confidence 345678999999999999984 78999999999999999998887764 3556789
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCC
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~ 450 (490)
+++|+|++. .+|++|+.||+|++||+++++++.++.+|...|++|+|+|++ ++||+||.|++|+|||+.++
T Consensus 219 ~~~~~p~~~--------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 219 SLAWHPQQS--------EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp EEEECSSCT--------TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred eeeecCCCC--------cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 999999754 278999999999999999999999999999999999999998 68999999999999999999
Q ss_pred eEEEEEecCCCEEEEEECCCCC-EEEEEECCCcEEEEEee
Q 011224 451 KIVKTYTGNGGIFEVCWNKEGD-KIAACFANHTVCVLDFR 489 (490)
Q Consensus 451 ~~~~~~~~~~~v~~~~~~~~g~-~la~~~~d~~v~v~~~~ 489 (490)
+++....+...|++++|+|+|. +|++|+.|++|.+|++.
T Consensus 291 ~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 291 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 8776544456799999999986 67789999999999975
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.1e-47 Score=364.83 Aligned_cols=288 Identities=19% Similarity=0.311 Sum_probs=239.9
Q ss_pred cccccceeEEEECCCCCEEEEEEC------CCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 139 EGHTSEVCACAWSPAGSLLASGSG------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 139 ~~H~~~V~~~~~sp~~~~l~sgs~------D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
.+|...|++++|||||++|||||. |+.|++|+..++...... ......|...|++++|+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~-------------~~~~~~~~~~V~~~~~s~d 105 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL-------------CTAGVQTEAGVTDVAWVSE 105 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG-------------CSEEEECSSCEEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE-------------ecccCCCCCCEEEEEEcCC
Confidence 469999999999999999999998 778999987665422111 1112235677999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCce-----eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 213 GTLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
+. +++++.||+|+|||+.... .....+|.+.|++++|+|++++|++|+.|++|++||+++++.
T Consensus 106 ~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~----------- 173 (357)
T 4g56_B 106 KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV----------- 173 (357)
T ss_dssp TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-----------
T ss_pred CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-----------
Confidence 86 5567889999999975431 224558999999999999999999999999999999887643
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeee--c
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDL--R 364 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~--~ 364 (490)
+..+.+|...|++++|+|++. ++++++.||+|++||+++++.+..+ .
T Consensus 174 ------------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 174 ------------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp ------------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred ------------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 334667889999999999985 7899999999999999998876654 3
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEE
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMH 443 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~ 443 (490)
.+...+.+++|+|++. .+|++|+.|+.|++||+++++++..+.+|...|++|+|+|++ ++||+|+.|++|+
T Consensus 224 ~~~~~v~~v~~sp~~~--------~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKD--------DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp TCCSCEEEEEECTTST--------TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred cccccccchhhhhccc--------ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 4667899999999864 278999999999999999999999999999999999999987 6899999999999
Q ss_pred EEEcCCCeEEEEEecCCCEEEEEECC-CCCEEEEEECCCcEEEEEee
Q 011224 444 IWSLKEGKIVKTYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~~~v~~~~~~~-~g~~la~~~~d~~v~v~~~~ 489 (490)
|||+.+++++..+.+...|++++|+| ++++||+|+.|++|++|++.
T Consensus 296 iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 296 VLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 99999999988776667899999999 79999999999999999985
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.8e-45 Score=376.40 Aligned_cols=325 Identities=31% Similarity=0.559 Sum_probs=288.9
Q ss_pred CCceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 132 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 132 ~~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
......+.+|...|.+++|+|++.+|++|+.|+.|++|+.... .+..+ ..|...|.+++|+|
T Consensus 211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~--------------~~~~~----~~~~~~v~~v~~~~ 272 (577)
T 2ymu_A 211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------------LLQTL----TGHSSSVNGVAFRP 272 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------------EEEEE----CCCSSCEEEEEECT
T ss_pred CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCC--------------EEEEE----ecCCCCEEEEEEcC
Confidence 3445678899999999999999999999999999999995321 11122 24567899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 212 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
++++|++++.|+.|++|+.++.....+.+|..+|++++|+|++.+|++++.|++|++||+... ....+..|...+.++.
T Consensus 273 d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~ 351 (577)
T 2ymu_A 273 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVA 351 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEE
Confidence 999999999999999999998888889999999999999999999999999999999998654 4456677888899998
Q ss_pred ccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccE
Q 011224 292 WRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 370 (490)
Q Consensus 292 ~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i 370 (490)
+.+ ...+++++.++.+++|+. ....+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|
T Consensus 352 ~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v 429 (577)
T 2ymu_A 352 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 429 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCe
Confidence 865 456788899999999995 45677888999999999999999999999999999999995 567788889999999
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
++++|+|++. +|++++.|+.|++||. +++.+..+.+|...|++++|+|++++||+++.|+.|++|+. ++
T Consensus 430 ~~~~~s~d~~---------~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~ 498 (577)
T 2ymu_A 430 WGVAFSPDDQ---------TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 498 (577)
T ss_dssp EEEEECTTSS---------EEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TS
T ss_pred EEEEECCCCC---------EEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CC
Confidence 9999999986 7999999999999996 57788899999999999999999999999999999999995 68
Q ss_pred eEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 451 KIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 451 ~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
+++..+.++ ..|++++|+|+|++||+++.|++|+|||.
T Consensus 499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence 888888775 46999999999999999999999999984
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-46 Score=353.98 Aligned_cols=296 Identities=25% Similarity=0.415 Sum_probs=236.4
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
.+.+|.+|..+|.+++|+|+ +|+||+.|++|++|++..+.. . ....+ ....|...|.+++|+|++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------~--~~~~~--~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------T--LIDVL--DETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------E--EEEEE--CTTCCCSCEEEEEECTTS
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------E--EEEEE--ecCCccCCEEEEEECCCC
Confidence 35678999999999999998 999999999999999865321 0 11111 012367889999999999
Q ss_pred CEEEEEeCCCeEEEEECCC--------ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc
Q 011224 214 TLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 285 (490)
++|++|+.|++|+||+... .....+.+|.++|++++|+|++++|++|+.|++|++||++....
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~--------- 141 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE--------- 141 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC---------
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC---------
Confidence 9999999999999999742 34557889999999999999999999999999999999853210
Q ss_pred CeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC--ceeeee
Q 011224 286 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDL 363 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~ 363 (490)
...++..+.+|...|.+++|+|++.+|++|+.|++|++||..++ .++..+
T Consensus 142 ----------------------------~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~ 193 (330)
T 2hes_X 142 ----------------------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL 193 (330)
T ss_dssp ----------------------------CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred ----------------------------CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc
Confidence 01223457789999999999999999999999999999998766 577888
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC--------eEEEEeeC-CCCCEEEEEECCCCCEEE
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--------KLLYSLNG-HREPVYSLAFSPTGEYLA 434 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--------~~~~~~~~-h~~~v~~l~~spdg~~l~ 434 (490)
.+|...|.+++|+|++.. .+|++|+.|++|++||+..+ .+...+.+ |...|++++|++++ +|+
T Consensus 194 ~~h~~~v~~~~~~~~~~~-------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~ 265 (330)
T 2hes_X 194 NGHEGTVWSSDFDKTEGV-------FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIA 265 (330)
T ss_dssp CCCSSCEEEEEECCSSSS-------CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEE
T ss_pred cCCCCcEEEEEecCCCCe-------eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEE
Confidence 999999999999998421 27899999999999998654 34555555 89999999999765 899
Q ss_pred EEeCCCcEEEEEcCCCe--EEEEE-ecCC--CEEEEEECC--CCCEEEEEECCCcEEEEEee
Q 011224 435 SGSLDKSMHIWSLKEGK--IVKTY-TGNG--GIFEVCWNK--EGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 435 s~s~dg~i~iw~~~~~~--~~~~~-~~~~--~v~~~~~~~--~g~~la~~~~d~~v~v~~~~ 489 (490)
+|+.||.|+||+..++. ..... .++. .|.+++|+| ++++||+|+.|++|+||+++
T Consensus 266 s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 266 SVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 99999999999998874 33333 3343 699999999 78999999999999999985
No 16
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-47 Score=370.31 Aligned_cols=292 Identities=25% Similarity=0.471 Sum_probs=254.6
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...+|.+|.+.|++++|+|++++|+||+.|++|+|||+.++.. ...+ ..|...|.+++|+|+|
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~-------------~~~~----~~h~~~v~~~~~s~~g 120 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK-------------THAI----KLHCPWVMECAFAPNG 120 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE-------------EEEE----ECCCTTCCCCEECTTS
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc-------------ceEE----ecCCCCEEEEEECCCC
Confidence 3568999999999999999999999999999999999876531 1122 2356779999999999
Q ss_pred CEEEEEeCCCeEEEEECCCc--------eeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEee----
Q 011224 214 TLLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF---- 280 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~--------~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~---- 280 (490)
++|++|+.|+.+++|++... ....+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.++..+..+
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~ 200 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF 200 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence 99999999999999997531 234678999999999999974 57999999999999999999888776
Q ss_pred -eeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcC-CCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 281 -EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 281 -~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
..|...+.++.+. +...+++++.|+.|++|+++ ...++..+.+|.+.|++++|+|++++|++|+.||+|++||+++
T Consensus 201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence 4577788888874 45788999999999999997 4577889999999999999999999999999999999999999
Q ss_pred Cceeeeecccc-------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe----eCCCCCEEEEE
Q 011224 357 DKYVHDLREHS-------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL----NGHREPVYSLA 425 (490)
Q Consensus 357 ~~~~~~~~~~~-------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~ 425 (490)
+..+..+..+. ..+.+++|+|++. +|++|+.||.|++||+..++.+..+ .+|...|++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGR---------LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp TEEEEEECCCCSSSCCSSCSCSEEEECSSSS---------EEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE
T ss_pred CcEEEEecccccccccccCceEEEEECCCCC---------EEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE
Confidence 98877665432 2488999999986 8999999999999999999988877 68999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCe
Q 011224 426 FSPTGEYLASGSLDKSMHIWSLKEGK 451 (490)
Q Consensus 426 ~spdg~~l~s~s~dg~i~iw~~~~~~ 451 (490)
|+|+|++|++||.|++|+||++...+
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999999999999987653
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-43 Score=336.54 Aligned_cols=289 Identities=28% Similarity=0.521 Sum_probs=250.4
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...++.+|...|++++|+|++++|++|+.|+.|++|++.++.. ... ...|...|.+++|+|++
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-------------~~~----~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-------------EKT----ISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEE----ECCCSSCEEEEEECTTS
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-------------chh----hccCCCceEEEEEcCCC
Confidence 3567899999999999999999999999999999999876531 111 23456789999999999
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 214 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
++|++|+.|+.|++|+... .....+.+|...|.+++|+|++++|++|+.|++|++||+++++.
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------- 141 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC---------------- 141 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE----------------
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE----------------
Confidence 9999999999999999864 55667889999999999999999999999999999999987543
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec-cccccEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIY 371 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~ 371 (490)
+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .+...+.
T Consensus 142 -------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 196 (312)
T 4ery_A 142 -------------------------LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196 (312)
T ss_dssp -------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEE
T ss_pred -------------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceE
Confidence 23455688889999999999999999999999999999988877654 4566899
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEE---EEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY---SLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~---~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
.++|+|++. +|++++.||.|++||+++++.+..+.+|...+. .....+++.+|++|+.||.|++||+.
T Consensus 197 ~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 197 FVKFSPNGK---------YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp EEEECTTSS---------EEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred EEEECCCCC---------EEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999986 789999999999999999999999988876533 23344678999999999999999999
Q ss_pred CCeEEEEEecCC-CEEEEEECCCCCEEEEEE--CCCcEEEEEee
Q 011224 449 EGKIVKTYTGNG-GIFEVCWNKEGDKIAACF--ANHTVCVLDFR 489 (490)
Q Consensus 449 ~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~--~d~~v~v~~~~ 489 (490)
+++++..+.++. .|.+++|+|+++.|++++ .|++|++|+..
T Consensus 268 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999987654 599999999999999987 59999999864
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.9e-44 Score=349.65 Aligned_cols=298 Identities=25% Similarity=0.472 Sum_probs=242.4
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEee-ecccccCCCCeEEEEEcCCCCEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTLLAT 218 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~s~~~~~l~s 218 (490)
+|...|++++|||+|++||+|+ |+++++|++.++................... ......+...|.+++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 7899999998765321111000000000000 0000112335999999999999999
Q ss_pred EeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 219 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 219 g~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
|+.|+.|+|||... .....+.+|...|++++|+|++.+|++|+.|++|++||+++++....+
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----------------- 203 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----------------- 203 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------
Confidence 99999999999875 455678999999999999999999999999999999999887543221
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeee-------cccccc
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDL-------REHSKE 369 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~ 369 (490)
.+...+.+++|+| ++++|++|+.||.|++||+.++..+..+ .+|...
T Consensus 204 -------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 204 -------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp -------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred -------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC
Confidence 1344688999999 8999999999999999999998877666 568889
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC------------eEEEEeeCCCCCEEEEEECCCCCEEEEEe
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------------KLLYSLNGHREPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~------------~~~~~~~~h~~~v~~l~~spdg~~l~s~s 437 (490)
|.+++|+|++. +|++|+.||.|++||+++. .+...+.+|...|.+++|+|++.+|++|+
T Consensus 259 v~~v~~~~~g~---------~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 329 (393)
T 1erj_A 259 VYSVVFTRDGQ---------SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329 (393)
T ss_dssp EEEEEECTTSS---------EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE
T ss_pred EEEEEECCCCC---------EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe
Confidence 99999999986 7999999999999999753 35567889999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEEecCC-CEEEEEECC------CCCEEEEEECCCcEEEEEee
Q 011224 438 LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNK------EGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 438 ~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~------~g~~la~~~~d~~v~v~~~~ 489 (490)
.|+.|++||+.+++.+..+.++. .|.+++|++ ++++||+|+.|++|+||+++
T Consensus 330 ~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 330 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 99999999999999988887654 599999886 68899999999999999986
No 19
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.3e-44 Score=339.94 Aligned_cols=321 Identities=17% Similarity=0.257 Sum_probs=277.7
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
|..+|.+++|+|+|++++++..++.+.+|..... ...+. ...|...|++++|+|++++|++++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~------------~~~~~-----~~~h~~~v~~~~~~~~~~~l~~~~ 70 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH------------ARQIN-----TLNHGEVVCAVTISNPTRHVYTGG 70 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE------------EEEEE-----EECCSSCCCEEEECSSSSEEEEEC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc------------cccce-----eccCCCceEEEEEecCCcEEEEcC
Confidence 5678999999999999998887776666643221 11111 124578899999999999999999
Q ss_pred CCCeEEEEECCCc----eeEEec--CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc--eeEeeeeeccCeEEEEc
Q 011224 221 YDGQARIWSTNGD----LKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 221 ~dg~i~iw~~~~~----~~~~~~--~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~ 292 (490)
||.|++|+.... ....+. .|..+|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...+.++.|
T Consensus 71 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 71 -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp -BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred -CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 999999997642 222333 799999999999999999999999999999999887 55566778888999998
Q ss_pred cC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEE
Q 011224 293 RN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 371 (490)
Q Consensus 293 ~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 371 (490)
.+ ...+++++.++.|++|++....++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.
T Consensus 150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~ 228 (337)
T 1gxr_A 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIF 228 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceE
Confidence 75 4577889999999999999999999999999999999999999999999999999999999998877664 677899
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 451 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~ 451 (490)
+++|+|++. +|++++.+|.|++||+.+++. ..+..|..+|++++|+|++++|++++.||.|++|++.+++
T Consensus 229 ~~~~s~~~~---------~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 229 SLGYCPTGE---------WLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEECTTSS---------EEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEECCCCC---------EEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 999999986 789999999999999998775 4677899999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEeeC
Q 011224 452 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 452 ~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
.+........+.+++|+|+|++|++++.|+.|++|++..
T Consensus 299 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 299 SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEeC
Confidence 887777777899999999999999999999999999874
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-43 Score=342.19 Aligned_cols=280 Identities=20% Similarity=0.385 Sum_probs=253.1
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc---
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--- 274 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~--- 274 (490)
+|...|++++|+|++++|+||+.||+|+||+... .....+..|...|.+++|+|++.+|++|+.|+.+++|++...
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 4678899999999999999999999999999654 455677889999999999999999999999999999998643
Q ss_pred ---ceeEeeeeeccCeEEEEccCC-ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC--CCCEEEEEeCCCe
Q 011224 275 ---EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVT 348 (490)
Q Consensus 275 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~dg~ 348 (490)
.....+..|...+..+.|.++ ..+++++.|++|++|++..++++..+.+|...|.+++|+| ++++|++|+.||+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 345567788899999998754 5789999999999999999999999999999999999987 5789999999999
Q ss_pred EEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC--CCCEEEEEE
Q 011224 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAF 426 (490)
Q Consensus 349 i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~ 426 (490)
|++||+++++++..+..|...|.+++|+|++. +|++|+.|++|++||++.++.+..+..+ ...+++++|
T Consensus 222 v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 222 AMVWDMRSGQCVQAFETHESDVNSVRYYPSGD---------AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEeCCCC---------EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 99999999999999999999999999999886 7999999999999999998887766543 357899999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+|+|++|++|+.|++|++||+.+++.+..+.++ ..|.+++|+|+|++||+|+.|++|+||+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999988888765 4699999999999999999999999996
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.5e-44 Score=343.94 Aligned_cols=295 Identities=22% Similarity=0.317 Sum_probs=239.6
Q ss_pred CceeeccccccceeEEEE-----CC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEE
Q 011224 133 SDVTILEGHTSEVCACAW-----SP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 206 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~-----sp-~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 206 (490)
....+|.+|++.|++++| +| ++++|+||+.|++|++|++........ ....... ..+|...|.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------~~~~~~~----l~~h~~~V~~ 81 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------FGIPHKA----LTGHNHFVSD 81 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------SEEEEEE----ECCCSSCEEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------cccccch----hccCCCceEE
Confidence 345689999999999999 77 899999999999999999875432110 0011122 2356788999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee---e
Q 011224 207 LDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---F 282 (490)
Q Consensus 207 ~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~---~ 282 (490)
++|+|++.++++|+.|++|++||+.. .....+.+|..+|++++|+|++++|++|+.|++|++||+.... ..... .
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~ 160 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKEN 160 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTS
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccC
Confidence 99999999999999999999999864 5567889999999999999999999999999999999997433 22222 4
Q ss_pred eccCeEEEEccCC-----------ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 283 HSGPTLDVDWRNN-----------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 283 ~~~~~~~~~~~~~-----------~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
|...+.++.|.+. ..+++++.|+.|++|+. .......+.+|...|.+++|+|+|++|++|+.||+|++
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEE
Confidence 6677888888654 46899999999999994 45666788899999999999999999999999999999
Q ss_pred EecCCC-ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE--Eee-----------CC
Q 011224 352 WNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN-----------GH 417 (490)
Q Consensus 352 wd~~~~-~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~-----------~h 417 (490)
||+... .....+ .+...|.+++|+|++. +++ ++.|+.|++||+.+++... .+. +|
T Consensus 240 wd~~~~~~~~~~~-~~~~~v~~v~~sp~~~---------~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
T 2xzm_R 240 WDILNLTYPQREF-DAGSTINQIAFNPKLQ---------WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308 (343)
T ss_dssp EESSCCSSCSEEE-ECSSCEEEEEECSSSC---------EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred EECCCCcccceee-cCCCcEEEEEECCCCC---------EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence 999543 333333 3456799999999875 555 5568889999998765432 443 68
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
...|++++|+|+|++|++|+.||+|++|++.++
T Consensus 309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 309 NPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 889999999999999999999999999998754
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-46 Score=367.80 Aligned_cols=325 Identities=20% Similarity=0.379 Sum_probs=277.5
Q ss_pred cccceeEEEECCCCC-EEEEE----------ECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 141 HTSEVCACAWSPAGS-LLASG----------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 141 H~~~V~~~~~sp~~~-~l~sg----------s~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
+...|.+++|+|+++ +|++| +.|+.|++|++.++..... .....+...|.+++|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~---------------~~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP---------------IASLQVDSKFNDLDW 75 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC---------------SCCCCCSSCEEEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE---------------EEEEecCCceEEEEE
Confidence 445789999999987 99999 8999999999976532100 011134678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-----ceeEEecCCCCCEEEEEecCC-CCEEEEEeCCCeEEEEEccCcc------ee
Q 011224 210 NGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEE------WK 277 (490)
Q Consensus 210 s~~~~~l~sg~~dg~i~iw~~~~-----~~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~------~~ 277 (490)
+|++++|++|+.||.|++|+... .....+.+|..+|++++|+|+ +++|++++.|++|++||+.++. ..
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 99999999999999999999875 366788899999999999998 8999999999999999998876 22
Q ss_pred E---eeeeeccCeEEEEccCC--ceEEEEcCCCeEEEEEcCCCcceeEecCC------CCCeeEEEEcCCC-CEEEEEeC
Q 011224 278 Q---QFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTG-SLLASCSD 345 (490)
Q Consensus 278 ~---~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------~~~v~~v~~~~~~-~~l~s~~~ 345 (490)
. .+..|...+.++.|.++ ..+++++.|+.|++|++....++..+..| ...|.+++|+|++ .+|++++.
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 2 23567788899999754 67889999999999999999888888776 7889999999997 68999999
Q ss_pred CC---eEEEEecCCC-ceeeeec-cccccEEEEEEcC-CCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC
Q 011224 346 DV---TAKIWNMKQD-KYVHDLR-EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 419 (490)
Q Consensus 346 dg---~i~iwd~~~~-~~~~~~~-~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 419 (490)
|+ .|++||++++ ..+..+. .|...|.+++|+| ++. +|++++.||.|++||+++++.+..+.+|..
T Consensus 236 d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~ 306 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEH---------LLLSSGRDNTVLLWNPESAEQLSQFPARGN 306 (416)
T ss_dssp CSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSS---------CEEEEESSSEEEEECSSSCCEEEEEECSSS
T ss_pred CCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCC---------eEEEEeCCCCEEEeeCCCCccceeecCCCC
Confidence 99 9999999986 6677777 8999999999999 664 789999999999999999999999999999
Q ss_pred CEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEEEE---------------e---------------------cCCCE
Q 011224 420 PVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTY---------------T---------------------GNGGI 462 (490)
Q Consensus 420 ~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~---------------~---------------------~~~~v 462 (490)
.|++++|+|++ .+|++++.|+.|++|++.++...... . ....+
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS 386 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence 99999999999 89999999999999999876532110 0 12345
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 463 FEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 463 ~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+++|+|+|++||+++.|++|+||++.
T Consensus 387 ~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 387 PAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp CCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred cceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 689999999999999999999999874
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.5e-43 Score=335.89 Aligned_cols=294 Identities=24% Similarity=0.381 Sum_probs=248.6
Q ss_pred eeeccccccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
..+|+||++.|++|+|+|+ +++|||||.|++|+|||+.+..... ....+.+ .+|...|.+++|+|++
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~~~~l----~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIPQRAL----RGHSHFVSDVVISSDG 98 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEEEEEE----CCCSSCEEEEEECTTS
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------ceeeEEE----eCCCCCEEEEEECCCC
Confidence 3579999999999999998 6899999999999999997654211 1122222 3467889999999999
Q ss_pred CEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee-EeeeeeccCeEEEE
Q 011224 214 TLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVD 291 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~ 291 (490)
++|++|+.|+.|++|+.... .......+...+..+.+++.+.+|++|+.|+.+++||+...... .....|...+..+.
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred CEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 99999999999999998754 34456678888999999999999999999999999998765433 33455677777777
Q ss_pred ccC---CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccc
Q 011224 292 WRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 368 (490)
Q Consensus 292 ~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 368 (490)
+.. ...+++++.|+.|++|++.....+..+.+|.+.|++++|+|++++|++|+.||+|++||+++.+.+..+.. ..
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~ 257 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GD 257 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SS
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-Cc
Confidence 643 34678899999999999999999999999999999999999999999999999999999999998887765 45
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee---------CCCCCEEEEEECCCCCEEEEEeCC
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------GHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~---------~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
.+.++.|+|++. +++++.|+.|++||++.+..+..+. +|...|++|+|+|+|++||+|+.|
T Consensus 258 ~v~~~~~~~~~~----------~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 258 IINALCFSPNRY----------WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp CEEEEEECSSSS----------EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred eEEeeecCCCCc----------eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 799999999873 5677789999999999888776553 688899999999999999999999
Q ss_pred CcEEEEEcCCCe
Q 011224 440 KSMHIWSLKEGK 451 (490)
Q Consensus 440 g~i~iw~~~~~~ 451 (490)
|.|+||++.+|+
T Consensus 328 g~v~iW~~~tGt 339 (340)
T 4aow_A 328 NLVRVWQVTIGT 339 (340)
T ss_dssp SCEEEEEEEC--
T ss_pred CEEEEEeCCCcC
Confidence 999999999885
No 24
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.8e-44 Score=350.30 Aligned_cols=282 Identities=20% Similarity=0.368 Sum_probs=249.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc--
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-- 275 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-- 275 (490)
+|...|++++|+|++++|++|+.||+|+||+... .....+..|...|.+++|+|++++|++|+.|+++++||+.+..
T Consensus 64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 4678899999999999999999999999999764 5566888999999999999999999999999999999986532
Q ss_pred -----eeEeeeeeccCeEEEEccC--CceEEEEcCCCeEEEEEcCCCcceeEe-----cCCCCCeeEEEEcC-CCCEEEE
Q 011224 276 -----WKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGEVNCVKWDP-TGSLLAS 342 (490)
Q Consensus 276 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~-----~~h~~~v~~v~~~~-~~~~l~s 342 (490)
....+..|.+.+..+.|.+ ...+++++.|++|++|++.++..+..+ .+|...|.+++|+| ++.+|++
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 223 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS 223 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence 3345677888888887764 456999999999999999999888777 68999999999987 8899999
Q ss_pred EeCCCeEEEEecC-CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC---
Q 011224 343 CSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR--- 418 (490)
Q Consensus 343 ~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~--- 418 (490)
|+.|++|++||++ ....+..+.+|...|.+++|+|++. +|++|+.||+|++||+++++.+..+..+.
T Consensus 224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~---------~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~ 294 (380)
T 3iz6_a 224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ---------RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294 (380)
T ss_dssp EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS---------EEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC---------eEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence 9999999999998 4577888899999999999999986 79999999999999999999988876543
Q ss_pred ----CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE----ec-CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 419 ----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY----TG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 419 ----~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~----~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
..|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+ .+.|.+++|+|+|++||+|+.|++|+||++.
T Consensus 295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 24899999999999999999999999999999888776 23 3469999999999999999999999999975
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.7e-42 Score=343.71 Aligned_cols=318 Identities=25% Similarity=0.443 Sum_probs=281.0
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
....+.+|.+.|.. +++++|++|++|+.||+|++||+.++.. +.. ..+|...|.+++|+ +
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-------------~~~----~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-------------LRT----LVGHTGGVWSSQMR--D 169 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-------------EEE----CCCCSSCEEEEEEE--T
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-------------EEE----EcCCCCCEEEEEec--C
Confidence 34678999987643 2555799999999999999999876542 122 23467889999998 5
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 214 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
.++++|+.||.|++|+... .....+.+|...|.++.|+ ++.|++|+.|++|++||+.+++....+..|..++.++.+
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 6999999999999999864 5567888999999999996 568999999999999999999999999999999999999
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
+...+++++.|+.|++|++....++..+.+|...|.+++| ++.++++|+.||.|++||+.+++.+..+..|...+.+
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 324 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 324 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence 5677899999999999999999999999999999999999 7899999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC---CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
+.+++. +|++|+.||.|++||+++++.+..+.+ |..+|++++|+ +.+|++|+.||.|++|++.+
T Consensus 325 ~~~~~~-----------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 325 MELKDN-----------ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EEEeCC-----------EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 887542 789999999999999999999999886 88899999996 57999999999999999999
Q ss_pred CeEEEEE------ecCCCEEEEEECCCCCEEEEEECCCc----EEEEEee
Q 011224 450 GKIVKTY------TGNGGIFEVCWNKEGDKIAACFANHT----VCVLDFR 489 (490)
Q Consensus 450 ~~~~~~~------~~~~~v~~~~~~~~g~~la~~~~d~~----v~v~~~~ 489 (490)
++.+..+ ...+.|++++|+|+|..||+|+.||+ |.||||+
T Consensus 392 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 392 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 9998887 23456999999999999999999998 9999986
No 26
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.8e-42 Score=357.37 Aligned_cols=328 Identities=17% Similarity=0.291 Sum_probs=272.0
Q ss_pred CceeeccccccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCC---CeEEEE
Q 011224 133 SDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK---DVTTLD 208 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~V~~~~ 208 (490)
..+..+.+|...|++++|+|++. +|++|+.|+.|++||+.++. .+..+. .|.. .|.+++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-------------~~~~~~----~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-------------FSASDR----THHKQGSFVRDVE 213 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-------------EEEEEC----SSSCTTCCEEEEE
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-------------eeeeec----ccCCCCceEEEEE
Confidence 34567889999999999999998 89999999999999976542 112222 3455 899999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCC-ceeEEe-c---CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee
Q 011224 209 WNGE-GTLLATGSYDGQARIWSTNG-DLKCTL-S---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 209 ~s~~-~~~l~sg~~dg~i~iw~~~~-~~~~~~-~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
|+|+ +++|++|+.||.|++|+... .....+ . .|..+|.+++|+ ++.+|++++.|++|++||+++++....+..
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 9999 99999999999999999764 455566 5 899999999999 999999999999999999999998888877
Q ss_pred e----ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC----------------------
Q 011224 283 H----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---------------------- 336 (490)
Q Consensus 283 ~----~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---------------------- 336 (490)
+ ...+..+.+.+...+++++.++.|++|++....++..+.+|...|.+++| |+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~ 371 (615)
T 1pgu_A 293 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH 371 (615)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred CCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence 6 35666777777788899999999999998877777777666655555544 32
Q ss_pred -----------CCE------------------------------------------------------------------
Q 011224 337 -----------GSL------------------------------------------------------------------ 339 (490)
Q Consensus 337 -----------~~~------------------------------------------------------------------ 339 (490)
+..
T Consensus 372 ~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (615)
T 1pgu_A 372 SNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 451 (615)
T ss_dssp CSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred cCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceE
Confidence 334
Q ss_pred -------EEEEeC-CCeEEEEecCCCcee-eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE
Q 011224 340 -------LASCSD-DVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 410 (490)
Q Consensus 340 -------l~s~~~-dg~i~iwd~~~~~~~-~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~ 410 (490)
|++++. |+.|++||+.++... ..+..|...|.+++|+|++. +|++|+.||.|++||+.+++.
T Consensus 452 ~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---------~l~~~~~dg~i~iw~~~~~~~ 522 (615)
T 1pgu_A 452 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET---------YIAAGDVMGKILLYDLQSREV 522 (615)
T ss_dssp EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTTEE
T ss_pred EEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC---------EEEEcCCCCeEEEeeCCCCcc
Confidence 444444 555555555444333 45567888999999999986 899999999999999999999
Q ss_pred EEEeeC-CCCCEEEEEECC----------CCCEEEEEeCCCcEEEEEcCCC-eEEEEEecC-CCEEEEEECCCCCEEEEE
Q 011224 411 LYSLNG-HREPVYSLAFSP----------TGEYLASGSLDKSMHIWSLKEG-KIVKTYTGN-GGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 411 ~~~~~~-h~~~v~~l~~sp----------dg~~l~s~s~dg~i~iw~~~~~-~~~~~~~~~-~~v~~~~~~~~g~~la~~ 477 (490)
+..+.+ |...|++++|+| ++++||+|+.||.|++|++.++ +.+..+.++ ..|.+++|+|+|+ |+++
T Consensus 523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~ 601 (615)
T 1pgu_A 523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS 601 (615)
T ss_dssp EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence 999988 999999999999 9999999999999999999998 777777654 5699999999999 9999
Q ss_pred ECCCcEEEEEee
Q 011224 478 FANHTVCVLDFR 489 (490)
Q Consensus 478 ~~d~~v~v~~~~ 489 (490)
+.|++|++|++.
T Consensus 602 ~~d~~v~iw~~~ 613 (615)
T 1pgu_A 602 GADACIKRWNVV 613 (615)
T ss_dssp ETTSCEEEEEEC
T ss_pred cCCceEEEEeee
Confidence 999999999986
No 27
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=373.60 Aligned_cols=330 Identities=15% Similarity=0.214 Sum_probs=263.7
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
...||...|++++|+|++++||+|+.||+|+||+..... .... ..+...|.+++|+| |++|
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~-------------~~~~-----~~~~~~V~~l~fsp-g~~L 72 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVE-------------VVIK-----LEDRSAIKEMRFVK-GIYL 72 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCE-------------EEEE-----CSSCCCEEEEEEET-TTEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcE-------------EEEE-----cCCCCCEEEEEEcC-CCEE
Confidence 345899999999999999999999999999999975431 1111 12457899999999 8899
Q ss_pred EEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee-----------Eeeeeec
Q 011224 217 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-----------QQFEFHS 284 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----------~~~~~~~ 284 (490)
++++.|++|+|||+.. .....+. |.+.|++++|+|++++|++|+.||+|++||+.++.+. ..+..|.
T Consensus 73 ~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~ 151 (902)
T 2oaj_A 73 VVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARL 151 (902)
T ss_dssp EEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCC
T ss_pred EEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCC
Confidence 9999999999999865 4444554 7789999999999999999999999999999987753 1224477
Q ss_pred cCeEEEEccCC--ceEEEEcCCCeEEEEEcCCCcceeEecCC------------------CCCeeEEEEcCCCCEEEEEe
Q 011224 285 GPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------------------QGEVNCVKWDPTGSLLASCS 344 (490)
Q Consensus 285 ~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~l~s~~ 344 (490)
+++.++.|.+. ..+++++.|+.| +|++...+++..+.+| ...|++++|+|+|++|++|+
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 88999999864 578889999999 9999999888888766 47799999999999999999
Q ss_pred CCCeEEEEecCCCceeee--ec---c-------------ccccEEEEEEc----CCCC--------C------C------
Q 011224 345 DDVTAKIWNMKQDKYVHD--LR---E-------------HSKEIYTIRWS----PTGS--------G------T------ 382 (490)
Q Consensus 345 ~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~i~~v~~~----p~g~--------~------~------ 382 (490)
.||+|++||+++++++.. +. . +...|++++|+ |++. . .
T Consensus 231 ~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 231 EDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp TTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 999999999988776542 21 1 22356666663 2100 0 0
Q ss_pred ---------------------------------------------------C----------------------------
Q 011224 383 ---------------------------------------------------N---------------------------- 383 (490)
Q Consensus 383 ---------------------------------------------------~---------------------------- 383 (490)
.
T Consensus 311 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~ 390 (902)
T 2oaj_A 311 GYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKA 390 (902)
T ss_dssp EECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCG
T ss_pred CCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCccccc
Confidence 0
Q ss_pred -----------------------------------------------------CCCCcEEEEEEECCCcEEEEeCCCCeE
Q 011224 384 -----------------------------------------------------NPNQQLILASASFDSTVKLWDVELGKL 410 (490)
Q Consensus 384 -----------------------------------------------------~~~~~~~l~sgs~dg~i~iwd~~~~~~ 410 (490)
.| ...+|++|+.|++||+||+.++..
T Consensus 391 ~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~ 469 (902)
T 2oaj_A 391 SLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDI 469 (902)
T ss_dssp GGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTT
T ss_pred ccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccc
Confidence 00 123789999999999999887642
Q ss_pred ----EEEe--e-----CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe----------------------------
Q 011224 411 ----LYSL--N-----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK---------------------------- 451 (490)
Q Consensus 411 ----~~~~--~-----~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~---------------------------- 451 (490)
.+.+ . +|...|++|+|+|+|++||+|+.||+|+||++.+++
T Consensus 470 ~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (902)
T 2oaj_A 470 QDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGV 549 (902)
T ss_dssp TTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCS
T ss_pred cCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccc
Confidence 1221 2 788999999999999999999999999999998763
Q ss_pred -----------------EEEEEec-CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 452 -----------------IVKTYTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 452 -----------------~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+.++.+ .+.|++++|+|+| +||+|+.|++|+|||++
T Consensus 550 ~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 550 LVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp EEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred cccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 2556654 4569999999999 99999999999999974
No 28
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.5e-42 Score=364.86 Aligned_cols=293 Identities=25% Similarity=0.428 Sum_probs=247.5
Q ss_pred eeccccccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 136 TILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
..|++|++.|++|+|+|++ .+|+|||.|++|++|++....... ....+. ..+|...|.+++|+|+++
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------~~~~~~----~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------GVAQRR----LTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------CEEEEE----EECCSSCEEEEEECTTSS
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------ccccce----ecCCCCcEEEEEECCCCC
Confidence 4688999999999999975 799999999999999987543210 011122 235678899999999999
Q ss_pred EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 215 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+|++|+.||.|+|||+.. .....+.+|...|++++|+|++.+|++|+.|++|++||+....... +
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~-~------------- 509 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYT-I------------- 509 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-E-------------
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCccee-e-------------
Confidence 999999999999999865 4556788999999999999999999999999999999975432100 0
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC--CEEEEEeCCCeEEEEecCCCceeeeeccccccEE
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 371 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 371 (490)
.....+|...|.|++|+|++ .+|++|+.|++|++||+++.+++..+..|...|.
T Consensus 510 ------------------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~ 565 (694)
T 3dm0_A 510 ------------------------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565 (694)
T ss_dssp ------------------------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ------------------------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 00124688899999999987 6899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 451 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~ 451 (490)
+++|+|++. +|++|+.||+|++||+++++.+..+.. ...|++++|+|++.+|++++ ++.|+|||+.+++
T Consensus 566 ~v~~spdg~---------~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 566 TVAVSPDGS---------LCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS 634 (694)
T ss_dssp EEEECTTSS---------EEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEeCCCC---------EEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC
Confidence 999999986 899999999999999999999888874 46799999999999888776 5569999999998
Q ss_pred EEEEEecC--------------------CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 452 IVKTYTGN--------------------GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 452 ~~~~~~~~--------------------~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++..+..+ ..+.+++|+|+|++|++|+.||+|+||++.
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 88766421 126889999999999999999999999985
No 29
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-41 Score=329.28 Aligned_cols=297 Identities=19% Similarity=0.324 Sum_probs=256.6
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...|.+|...|++++|+|++++|++|+.||.|++|++.++.. +..+ ..|...|.+++|+|+++
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~~~~~ 87 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-------------LGTL----DGHTGTIWSIDVDCFTK 87 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-------------hhhh----hhcCCcEEEEEEcCCCC
Confidence 356899999999999999999999999999999999876532 1122 24567899999999999
Q ss_pred EEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCC-----CeEEEEEccCcceeEeeeeeccCeE
Q 011224 215 LLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
+|++++.||.|++|++... ....+. |..+|.+++|+|++.+|++++.+ +.|++||+........+..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------ 160 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------ 160 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc------
Confidence 9999999999999998754 344444 88999999999999999999999 9999999876543222211
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCC--CeeEEEEcCCCCEEEEEeCCCeEEEEecCC-Cceeeeecc
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLRE 365 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~ 365 (490)
....++..+.+|.+ .+.+++|+|++++|++++.||.|++||+.+ ...+..+..
T Consensus 161 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 161 ------------------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp ------------------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred ------------------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec
Confidence 11223445556666 899999999999999999999999999998 788888889
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC-----
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----- 440 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg----- 440 (490)
|...|.+++|+|++. +|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.++
T Consensus 217 ~~~~v~~~~~~~~~~---------~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 217 HEKSISDMQFSPDLT---------YFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp CSSCEEEEEECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred CCCceeEEEECCCCC---------EEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 999999999999886 78999999999999999999988888 778899999999999999999988
Q ss_pred ---------cEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 441 ---------SMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 441 ---------~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.|++|++.+++.+..+.++ ..|.+++|+|+|++|++|+.|++|+||+++
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence 8999999999998888764 569999999999999999999999999985
No 30
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.6e-41 Score=326.18 Aligned_cols=280 Identities=22% Similarity=0.358 Sum_probs=238.0
Q ss_pred cccCCCCeEEEEE-----cC-CCCEEEEEeCCCeEEEEECCC--------ceeEEecCCCCCEEEEEecCCCCEEEEEeC
Q 011224 197 TNEKSKDVTTLDW-----NG-EGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 262 (490)
Q Consensus 197 ~~~~~~~V~~~~~-----s~-~~~~l~sg~~dg~i~iw~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~ 262 (490)
..+|...|++++| ++ ++++|++|+.|++|+||+... .....+.+|..+|++++|+|++.+|++|+.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC
Confidence 3456889999999 76 999999999999999999753 234578899999999999999999999999
Q ss_pred CCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEe---cCCCCCeeEEEEcCCC-
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTF---AGHQGEVNCVKWDPTG- 337 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~---~~h~~~v~~v~~~~~~- 337 (490)
|++|++||+++++....+..|...+.++.|.+ ...+++++.|+.|++|++..... ..+ .+|...|.+++|+|++
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 175 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEKENHSDWVSCVRYSPIMK 175 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-EECCTTTSCSSCEEEEEECCCCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-eeeecccCCCceeeeeeeccccc
Confidence 99999999999999999999999999999975 45788999999999999974332 222 2788999999999987
Q ss_pred ---------CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-
Q 011224 338 ---------SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL- 407 (490)
Q Consensus 338 ---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~- 407 (490)
.+|++++.||+|++||. .......+..|...|.+++|+|++. +|++|+.||.|++||+..
T Consensus 176 ~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~---------~l~sgs~dg~v~iwd~~~~ 245 (343)
T 2xzm_R 176 SANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGK---------YIATGGKDKKLLIWDILNL 245 (343)
T ss_dssp SCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSS---------EEEEEETTCEEEEEESSCC
T ss_pred cccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCC---------EEEEEcCCCeEEEEECCCC
Confidence 78999999999999994 5566778889999999999999986 899999999999999953
Q ss_pred CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE--EEe-----------c-CCCEEEEEECCCCCE
Q 011224 408 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK--TYT-----------G-NGGIFEVCWNKEGDK 473 (490)
Q Consensus 408 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~--~~~-----------~-~~~v~~~~~~~~g~~ 473 (490)
......+. +...|++++|+|++++|++| .|+.|++|++.+++... .+. + ...+++++|+|+|++
T Consensus 246 ~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 246 TYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp SSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred cccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 33444443 45679999999999988765 57889999998876433 332 2 245899999999999
Q ss_pred EEEEECCCcEEEEEee
Q 011224 474 IAACFANHTVCVLDFR 489 (490)
Q Consensus 474 la~~~~d~~v~v~~~~ 489 (490)
||+|+.||+|++|++.
T Consensus 324 l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 324 LFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEecCCceEEEEEEE
Confidence 9999999999999985
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.5e-42 Score=341.01 Aligned_cols=320 Identities=13% Similarity=0.183 Sum_probs=264.8
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
..+++++|+|++++|++|+.|+.|++|++.++...... .. ...+....|++++++|++|+.|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~l~~~~~d 118 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-----------------KR-ADYTAVDTAKLQMRRFILGTTE 118 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-----------------CS-CCEEEEEEECSSSCEEEEEETT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-----------------ec-CCceEEEEEecCCCEEEEEECC
Confidence 44668999999999999999999999998765432111 11 1334555789999999999999
Q ss_pred CeEEEEECCCcee-EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEE
Q 011224 223 GQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFAT 300 (490)
Q Consensus 223 g~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 300 (490)
|.|++|+...... ..+.+|.+.|++++|+|++++|++|+.|++|++||+.+++....+..|...+.++.|.+ ...+++
T Consensus 119 g~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 198 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 198 (420)
T ss_dssp SCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEE
Confidence 9999999876544 45579999999999999999999999999999999999999999999999999999975 457889
Q ss_pred EcCCCeEEEEEcCCCcceeEecCC---C---------------------CCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGH---Q---------------------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h---~---------------------~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
++.|+.|++|++..++++..+..| . ..+.+++|+|++++|++|+.||.|++||+++
T Consensus 199 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 278 (420)
T 3vl1_A 199 ASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFS 278 (420)
T ss_dssp EETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTT
T ss_pred EcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999999888888753 3 3444455688999999999999999999999
Q ss_pred Cceeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE-EEEeeC-CCCCEEEEEECCCCCEE
Q 011224 357 DKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-LYSLNG-HREPVYSLAFSPTGEYL 433 (490)
Q Consensus 357 ~~~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~-h~~~v~~l~~spdg~~l 433 (490)
++.+..+. .|...+.+++|+|++. .+|++|+.||.|++||+++++. +..+.+ |..+|+++.| |++++|
T Consensus 279 ~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l 349 (420)
T 3vl1_A 279 KEQTIQLPSKFTCSCNSLTVDGNNA--------NYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALF 349 (420)
T ss_dssp CCEEEEECCTTSSCEEEEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEE
T ss_pred CceeEEcccccCCCceeEEEeCCCC--------CEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEE
Confidence 88776664 4788999999999875 2789999999999999998753 666666 6778888865 578899
Q ss_pred EEEeCCCcEEEEEcCCCe----------EEEEEecCCCEEEEEECCCCC---EEEEEECCCcEEEEEee
Q 011224 434 ASGSLDKSMHIWSLKEGK----------IVKTYTGNGGIFEVCWNKEGD---KIAACFANHTVCVLDFR 489 (490)
Q Consensus 434 ~s~s~dg~i~iw~~~~~~----------~~~~~~~~~~v~~~~~~~~g~---~la~~~~d~~v~v~~~~ 489 (490)
++++.|+.|++|++.+.. ..........|.+++|+|+|+ .|++++.+|.+.+|++.
T Consensus 350 ~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 350 VSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp EEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred EEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 999999999999987631 112223345689999999999 78888889999999874
No 32
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.1e-42 Score=334.19 Aligned_cols=285 Identities=15% Similarity=0.253 Sum_probs=239.2
Q ss_pred eeeccccccceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-C
Q 011224 135 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 212 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~-~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~ 212 (490)
...+.+|...|++++|+|++ ++|++|+.|+.|++|++.++... .. . ...+|...|.+++|+| +
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~--~--~~~~h~~~v~~~~~~~~~ 130 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-----------SF--I--QGMGPGDAITGMKFNQFN 130 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-----------EE--E--CCCSTTCBEEEEEEETTE
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-----------ee--e--ecCCcCCceeEEEeCCCC
Confidence 45788999999999999999 99999999999999999765421 01 1 1124678899999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEecCC---CCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 213 GTLLATGSYDGQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
+.+|++++.|+.|++|+..+.....+..| ...|.+++|+|++.+|++|+.|+.|++||++ +.
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~-------------- 195 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH-------------- 195 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--------------
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--------------
Confidence 89999999999999999987766666544 4889999999999999999999999999984 22
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCC----Cceeeeec
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ----DKYVHDLR 364 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~ 364 (490)
++..+.+|...|.+++|+|+++ +|++|+.|+.|++||+++ +.++..+
T Consensus 196 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 247 (383)
T 3ei3_B 196 ---------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM- 247 (383)
T ss_dssp ---------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-
T ss_pred ---------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-
Confidence 2334567889999999999999 999999999999999987 5556555
Q ss_pred cccccEEEEEEcC-CCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-----------------CCEEEEEE
Q 011224 365 EHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------------EPVYSLAF 426 (490)
Q Consensus 365 ~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----------------~~v~~l~~ 426 (490)
.|...+.+++|+| ++. +|++++.||.|++||+++++.+..+.+|. ..+..++|
T Consensus 248 ~~~~~v~~~~~s~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 248 PHEKPVNAAYFNPTDST---------KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp ECSSCEEEEEECTTTSC---------EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred cCCCceEEEEEcCCCCC---------EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 6889999999999 876 78999999999999999887766665442 34555777
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC---CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~---~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+|++++ +|+.|+.|++||+.+++++..+.++ +.+..++|+|+|++||+|+ |++|+|||++
T Consensus 319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 788777 7889999999999999999998752 3466779999999999997 8999999985
No 33
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-41 Score=347.32 Aligned_cols=345 Identities=17% Similarity=0.261 Sum_probs=282.4
Q ss_pred Cceeeccccccc-eeEEEECC--CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 133 SDVTILEGHTSE-VCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 133 ~~~~~l~~H~~~-V~~~~~sp--~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
.....+.+|... |++++|+| ++++|++|+.||.|++|++.++.... ........ ....+...|.+++|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----~~~~~~~~----~~~~~~~~v~~~~~ 124 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN-----SVEVNVKS----EFQVLAGPISDISW 124 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT-----EEEEEEEE----EEECCSSCEEEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc-----cccccccc----hhhcccccEEEEEE
Confidence 456788999999 99999999 99999999999999999986431100 00011112 22345678999999
Q ss_pred cCCCCEEEEEeCC----CeEEEEECCCceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 210 NGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 210 s~~~~~l~sg~~d----g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+|++++|++++.+ +.|++|+ .+.....+.+|...|++++|+|++. .|++++.|+.|++||+.+++....+..|.
T Consensus 125 s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 125 DFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 203 (615)
T ss_dssp CTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred eCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence 9999999999988 7999999 4556778889999999999999998 79999999999999999999999998888
Q ss_pred c---CeEEEEccCC--ceEEEEcCCCeEEEEEcCCCcceeEe-c---CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 285 G---PTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF-A---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 285 ~---~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~-~---~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
. .+.++.|.++ ..+++++.|+.|++|++..++.+..+ . +|...|.+++|+ ++++|++++.||.|++||+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 8 8999999755 56888999999999999999999888 6 899999999999 99999999999999999998
Q ss_pred CCceeeeec---------------------------------------------cccccEEEEEEcCC------------
Q 011224 356 QDKYVHDLR---------------------------------------------EHSKEIYTIRWSPT------------ 378 (490)
Q Consensus 356 ~~~~~~~~~---------------------------------------------~~~~~i~~v~~~p~------------ 378 (490)
+++.+..+. .|...|.+++| |+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~ 361 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIME 361 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEE
T ss_pred CCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEE
Confidence 765544332 23333333333 21
Q ss_pred ---------------------CCCC-----------CC----------------C-------------------CC----
Q 011224 379 ---------------------GSGT-----------NN----------------P-------------------NQ---- 387 (490)
Q Consensus 379 ---------------------g~~~-----------~~----------------~-------------------~~---- 387 (490)
+... .. | ..
T Consensus 362 w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (615)
T 1pgu_A 362 WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 441 (615)
T ss_dssp TTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee
Confidence 1100 00 0 00
Q ss_pred --------------cEEEEEEEC-CCcEEEEeCCCCeEE-EEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 011224 388 --------------QLILASASF-DSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 451 (490)
Q Consensus 388 --------------~~~l~sgs~-dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~ 451 (490)
..+|++++. ||.|++||+..++.. ..+.+|...|++++|+|++++|++|+.||.|++|++.+++
T Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 442 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp EEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence 225778888 999999999877665 6678899999999999999999999999999999999999
Q ss_pred EEEEEec--CCCEEEEEECC----------CCCEEEEEECCCcEEEEEee
Q 011224 452 IVKTYTG--NGGIFEVCWNK----------EGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 452 ~~~~~~~--~~~v~~~~~~~----------~g~~la~~~~d~~v~v~~~~ 489 (490)
.+..+.+ ...|.+++|+| +|++||+|+.|++|+|||++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 9888764 45699999999 99999999999999999985
No 34
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.3e-41 Score=334.75 Aligned_cols=318 Identities=22% Similarity=0.349 Sum_probs=267.0
Q ss_pred eeeccccccce-eEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTSEV-CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~~V-~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...+.+|...| +++.| ++.+|+||+.||+|++||+.++.. +..+ .+|...|++++|++++
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~-------------~~~~----~~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-------------LLQL----SGHDGGVWALKYAHGG 174 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEECSTT
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE-------------EEEE----eCCCcCEEEEEEcCCC
Confidence 45788999885 66665 678999999999999999876531 1222 3467899999999988
Q ss_pred CEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEec--CCCCEEEEEeCCCeEEEEEccCcce--------------
Q 011224 214 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVKTEEW-------------- 276 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~--~~~~~l~s~s~D~~v~iwd~~~~~~-------------- 276 (490)
+|++|+.||+|++|+... .....+.+|.++|.+++|+ +++.+|++|+.|++|++||+.++..
T Consensus 175 -~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred -EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 999999999999999864 4566788999999999998 5778999999999999999987653
Q ss_pred ---------eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC
Q 011224 277 ---------KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 347 (490)
Q Consensus 277 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg 347 (490)
...+..|...+.++.. +...+++++.|+.|++|++....++..+.+|...|.+++|+|++++|++|+.||
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg 332 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred eccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 3345556666776654 345788899999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEEC
Q 011224 348 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427 (490)
Q Consensus 348 ~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s 427 (490)
.|++||+.+++++..+..|...|.+++|++. +|++|+.||.|++||+.++....... |...+..++|+
T Consensus 333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-----------~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~ 400 (464)
T 3v7d_B 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDK-----------FLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY 400 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred cEEEEECCCCcEEEEEeCCCCcEEEEEEcCC-----------EEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence 9999999999999999999999999999742 79999999999999999988777665 66778889999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEE--ecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 428 PTGEYLASGSLDKSMHIWSLKEGKIVKTY--TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 428 pdg~~l~s~s~dg~i~iw~~~~~~~~~~~--~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
|++++|++|+ ||.|++||+.+++++..+ .+...|.+++|+ ....+++++.++.+.+|-
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9999999999 899999999999998763 234569999997 334555556677655543
No 35
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.5e-41 Score=360.11 Aligned_cols=327 Identities=23% Similarity=0.331 Sum_probs=281.8
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
.+.+.+|.+.|++++|||++++||+|+.||.|+|||+.++.. +..+ ..|..+|.+++|+|+++
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------VRSI----QVTETPVRAGKFIARKN 68 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEE----ECCSSCEEEEEEEGGGT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------EEEE----ecCCCcEEEEEEeCCCC
Confidence 467899999999999999999999999999999999876531 1222 24567899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc-ceeEeeeeeccCeEEEEc
Q 011224 215 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~ 292 (490)
+|++|+.||.|++|+.. +.....+.+|.+.|++++|+|++.+|++|+.||+|++||+.++ .....+..|..++.++.|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 99999999999999976 4566788899999999999999999999999999999999887 667788889999999999
Q ss_pred cC--CceEEEEcCCCeEEEEEcCCCcceeEecCCC-CCeeEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 293 RN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 293 ~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-~~v~~v~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
.+ ...+++++.|+.|++|++....+...+..+. ..+.+++|+| ++.+|++|+.||.|++||+.++..+..+..|.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~ 228 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM 228 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence 76 4578899999999999998888777776655 8899999999 99999999999999999999999999999999
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC--EEEEEeCCCcEEEE
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIW 445 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~--~l~s~s~dg~i~iw 445 (490)
..+.+++|+|++. +|++|+.||.|++||+.+++.+..+..|...|++++|+|+|. ++++++ ++.+.+|
T Consensus 229 ~~v~~~~~~~~~~---------~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~ 298 (814)
T 3mkq_A 229 SNVSFAVFHPTLP---------IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVL 298 (814)
T ss_dssp SCEEEEEECSSSS---------EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEE
T ss_pred CCEEEEEEcCCCC---------EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEE
Confidence 9999999999986 799999999999999999999999999999999999999987 455554 6678889
Q ss_pred EcCCCe----------EEEEE---------------------------------e-cCCCEEEEEECCCCCEEEEEECCC
Q 011224 446 SLKEGK----------IVKTY---------------------------------T-GNGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 446 ~~~~~~----------~~~~~---------------------------------~-~~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
++..+. .+... . ....+.+++|+|+|++|++++ ++
T Consensus 299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~ 377 (814)
T 3mkq_A 299 SLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DG 377 (814)
T ss_dssp ECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TT
T ss_pred EcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CC
Confidence 876432 22110 0 011357899999999999988 88
Q ss_pred cEEEEEee
Q 011224 482 TVCVLDFR 489 (490)
Q Consensus 482 ~v~v~~~~ 489 (490)
.+.||+++
T Consensus 378 ~~~i~~~~ 385 (814)
T 3mkq_A 378 EYVIYTAL 385 (814)
T ss_dssp EEEEEETT
T ss_pred EEEEEECc
Confidence 99999864
No 36
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=321.33 Aligned_cols=246 Identities=25% Similarity=0.458 Sum_probs=221.7
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
..+.+|...|.+++|+|++.+++||+.|++|++||+.++.. +..+. .+...+.+++|+|++++
T Consensus 74 ~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~-------------~~~~~----~~~~~~~~~~~spdg~~ 136 (321)
T 3ow8_A 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-------------IKSID----AGPVDAWTLAFSPDSQY 136 (321)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEEE----CCTTCCCCEEECTTSSE
T ss_pred eeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCE-------------EEEEe----CCCccEEEEEECCCCCE
Confidence 46889999999999999999999999999999999976532 11221 23466889999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 216 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
|++|+.||.|++|+... .....+..|...|.+++|+|++++|++|+.|++|++||+++++.
T Consensus 137 l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~------------------ 198 (321)
T 3ow8_A 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL------------------ 198 (321)
T ss_dssp EEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE------------------
T ss_pred EEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE------------------
Confidence 99999999999999864 45567788999999999999999999999999999999987643
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 374 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 374 (490)
+..+.+|...|.+++|+|++++|++|+.|++|+|||++++..+..+.+|...|.+++
T Consensus 199 -----------------------~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~ 255 (321)
T 3ow8_A 199 -----------------------LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA 255 (321)
T ss_dssp -----------------------EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -----------------------EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence 234567888999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
|+|++. +|++|+.|++|++||+.+++++.++.+|...|++++|+|++++|++++.||+|+|||..
T Consensus 256 ~sp~~~---------~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 256 FCPDDT---------HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ECTTSS---------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ECCCCC---------EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999986 79999999999999999999999999999999999999999999999999999999963
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-41 Score=324.68 Aligned_cols=252 Identities=19% Similarity=0.264 Sum_probs=208.4
Q ss_pred cccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEE
Q 011224 139 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 218 (490)
Q Consensus 139 ~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 218 (490)
..|..+|++++|+|++ .|++|+.||+|+|||+.++.... . ......+|...|++++|+|+|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~----------~---~~~~~~~H~~~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI----------V---SKFCKYEHDDIVSTVSVLSSGTQAVS 144 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE----------E---EEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee----------E---eeccccCCCCCEEEEEECCCCCEEEE
Confidence 3467889999999985 67899999999999998765321 1 11112356788999999999999999
Q ss_pred EeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc
Q 011224 219 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296 (490)
Q Consensus 219 g~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
|+.|++|+|||+.. .....+.+|.+.|++++|+|++. .|++|+.|++|++||+++++....+.
T Consensus 145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--------------- 209 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG--------------- 209 (344)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC---------------
T ss_pred EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeee---------------
Confidence 99999999999864 55678899999999999999885 68999999999999998876543321
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEE
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
...|...+.+++|+|+ +++|++|+.||+|+|||+++++++..+.+|...|++++|
T Consensus 210 ------------------------~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 210 ------------------------CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp ----------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred ------------------------cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 1234556889999995 578899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEEcCCCeE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iw~~~~~~~ 452 (490)
+|++. .+|++|+.|++|+|||+.+++++ .+.+|...|++|+|+|+++ +|++||.|++|++|++.+..+
T Consensus 266 sp~g~--------~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 266 SPHSV--------PFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CSSSS--------CCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred ccCCC--------eEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99874 27899999999999999988754 6789999999999999986 577999999999999987554
No 38
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.3e-41 Score=331.47 Aligned_cols=295 Identities=21% Similarity=0.322 Sum_probs=253.8
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC--
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 212 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-- 212 (490)
..++.+|.+.|++++|+| .+|++|+.||.|++|++.++..... ... ... ...|...|++++|+|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----~~~--~~~----~~~h~~~v~~~~~~~~~~ 75 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----KDK--SYS----HFVHKSGLHHVDVLQAIE 75 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----GGG--EEE----EECCTTCEEEEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----CCc--ceE----EecCCCcEEEEEEecccc
Confidence 467889999999999999 8999999999999999987542111 000 111 1245778999999999
Q ss_pred --C---CEEEEEeCCCeEEEEECCCce------eEEecCC-----CCCEEEEEec----CCCCE-EEEEeCCCeEEEEEc
Q 011224 213 --G---TLLATGSYDGQARIWSTNGDL------KCTLSKH-----KGPIFSLKWN----KKGDY-LLTGSCDKTAIVWDV 271 (490)
Q Consensus 213 --~---~~l~sg~~dg~i~iw~~~~~~------~~~~~~h-----~~~V~~l~~~----~~~~~-l~s~s~D~~v~iwd~ 271 (490)
+ ++|++++.||.|++|+..... ...+..| ...|++++|+ |++.+ |++|+.|+.|++||+
T Consensus 76 ~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 76 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp TTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 9 999999999999999976443 6678888 5999999999 99999 999999999999999
Q ss_pred cC------cceeE-----eeee-------eccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC---C---CCC
Q 011224 272 KT------EEWKQ-----QFEF-------HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---H---QGE 327 (490)
Q Consensus 272 ~~------~~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~---h---~~~ 327 (490)
.+ +.... .+.. |...+.++.|.++..+++++.|+.|++|++....++..+.+ | ...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 98 66555 5633 67788899887544888899999999999999999999998 9 999
Q ss_pred eeEEEEcCCCCEEEEEeCC---CeEEEEecCCCceeeeecc-------------ccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 328 VNCVKWDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLRE-------------HSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 328 v~~v~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~-------------~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
|.+++|+|++++|++++.| |.|++||+.+++.+..+.. |...|.+++|+|++. +|
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l 306 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---------TL 306 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---------EE
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---------EE
Confidence 9999999999999999999 9999999999999999988 999999999999886 79
Q ss_pred EEEECCCcEEEEeCCCCeEEEEee------CC---------------CCCEEEEEECCCC----------CEEEEEeCCC
Q 011224 392 ASASFDSTVKLWDVELGKLLYSLN------GH---------------REPVYSLAFSPTG----------EYLASGSLDK 440 (490)
Q Consensus 392 ~sgs~dg~i~iwd~~~~~~~~~~~------~h---------------~~~v~~l~~spdg----------~~l~s~s~dg 440 (490)
++|+.||.|++||+.+++.+..+. +| ..+|++++|+|++ ++|++|+.||
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 999999999999999999999999 88 9999999999998 7999999999
Q ss_pred cEEEEEcCCCe
Q 011224 441 SMHIWSLKEGK 451 (490)
Q Consensus 441 ~i~iw~~~~~~ 451 (490)
.|++|++.+|+
T Consensus 387 ~i~iw~~~~g~ 397 (397)
T 1sq9_A 387 SIRWFREAGGK 397 (397)
T ss_dssp EEEEEEEEC--
T ss_pred cEEEEEcCCCC
Confidence 99999998764
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.1e-41 Score=373.58 Aligned_cols=336 Identities=21% Similarity=0.345 Sum_probs=284.4
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...+.+|.+.|++++|+|+|++|++|+.||+|++|++.++.. +..+ ..|...|.+++|+|+++
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-------------~~~~----~~h~~~v~~~~~s~~~~ 670 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-------------LLDI----KAHEDEVLCCAFSSDDS 670 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEECTTSS
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-------------EEEe----ccCCCCEEEEEEecCCC
Confidence 457889999999999999999999999999999999987642 1122 24678899999999999
Q ss_pred EEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecC--CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 215 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+|++|+.||.|+|||.. +.....+.+|...|++++|+| ++.++++|+.|++|++||+.++.....+..|..++.++.
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~ 750 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR 750 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence 99999999999999986 456678889999999999999 456899999999999999999999999999999999999
Q ss_pred ccC-CceEEEEcCCCeEEEEEcCCCcceeEe-------------------------------------------------
Q 011224 292 WRN-NVSFATSSTDNMIYVCKIGENRPIKTF------------------------------------------------- 321 (490)
Q Consensus 292 ~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~------------------------------------------------- 321 (490)
|.+ ...+++++.|+.|++|++........+
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~ 830 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCC
T ss_pred EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCC
Confidence 965 457889999999999998655322211
Q ss_pred ------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCC-------------
Q 011224 322 ------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT------------- 382 (490)
Q Consensus 322 ------~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~------------- 382 (490)
.+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|.+++|+|++...
T Consensus 831 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 2678889999999999999999999999999999999999999999999999999987510
Q ss_pred ----------------------------------------------------------CCCCCcEEEEEEECCCcEEEEe
Q 011224 383 ----------------------------------------------------------NNPNQQLILASASFDSTVKLWD 404 (490)
Q Consensus 383 ----------------------------------------------------------~~~~~~~~l~sgs~dg~i~iwd 404 (490)
..|.. .++++|+.+|.|++|+
T Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g-~~l~~g~~~g~i~i~d 989 (1249)
T 3sfz_A 911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIE 989 (1249)
T ss_dssp HHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTS-SEEEEEETTSCCEEEE
T ss_pred ccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCC-CEEEEEcCCCCEEEEE
Confidence 00111 1355566666666666
Q ss_pred CCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEE
Q 011224 405 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVC 484 (490)
Q Consensus 405 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~ 484 (490)
+.+++.+..+.+|...|++++|+|+|++|++++.||.|++|++.+++.+....+...+.+++|+|++ .+++++.|++|+
T Consensus 990 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVK 1068 (1249)
T ss_dssp TTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEE
T ss_pred cCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEE
Confidence 6667777777889999999999999999999999999999999999887655556679999999976 678899999999
Q ss_pred EEEee
Q 011224 485 VLDFR 489 (490)
Q Consensus 485 v~~~~ 489 (490)
+||++
T Consensus 1069 vwd~~ 1073 (1249)
T 3sfz_A 1069 VWNVI 1073 (1249)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99974
No 40
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-41 Score=361.10 Aligned_cols=333 Identities=9% Similarity=0.086 Sum_probs=249.9
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeee---cccccCCCCeEEEEEcC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~V~~~~~s~ 211 (490)
+..+. |...|++++|+|++.+|++|+.||+|++||+.++... .+.+.... .....|...|.+++|+|
T Consensus 92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~---------~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS---------SFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE---------EEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc---------cceeccccccccccccCCCCeEEEEEcc
Confidence 34454 7789999999999999999999999999999765310 00110000 12245678999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCc-eeEEecCC------------------CCCEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011224 212 E-GTLLATGSYDGQARIWSTNGD-LKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 212 ~-~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h------------------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 271 (490)
+ +.+|++|+.||.| +||+... ....+..| ...|++++|+|++.+|++|+.|++|++||+
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 6 5789999999999 9998754 34445444 578999999999999999999999999999
Q ss_pred cCcceeEe--ee---e-------------eccCeEEEEcc----CC--c-------------------------------
Q 011224 272 KTEEWKQQ--FE---F-------------HSGPTLDVDWR----NN--V------------------------------- 296 (490)
Q Consensus 272 ~~~~~~~~--~~---~-------------~~~~~~~~~~~----~~--~------------------------------- 296 (490)
++++.+.. +. . +..++..+.|. ++ .
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 88765442 10 0 12234444441 10 1
Q ss_pred ---------------------------------------------eEEEEcCCCeEEEEEcCCCcceeE-----------
Q 011224 297 ---------------------------------------------SFATSSTDNMIYVCKIGENRPIKT----------- 320 (490)
Q Consensus 297 ---------------------------------------------~~~~~~~d~~i~~~~~~~~~~~~~----------- 320 (490)
.+++.+.|+.|++|++.++.+...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 123333455666666544322111
Q ss_pred ------------------------------ecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee--ee----c
Q 011224 321 ------------------------------FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DL----R 364 (490)
Q Consensus 321 ------------------------------~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~----~ 364 (490)
+.||...+.+++|+|++++|+||+.|++|++||+.++.... .+ .
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~ 480 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS 480 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence 22344445556668999999999999999999998774321 11 1
Q ss_pred -----cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-------------------------------
Q 011224 365 -----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------------------------------- 408 (490)
Q Consensus 365 -----~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~------------------------------- 408 (490)
.|...|.+++|+|++. +||+|+.||+|+|||+.++
T Consensus 481 ~~~~~~h~~~V~svafspdg~---------~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (902)
T 2oaj_A 481 RTLNKAKELAVDKISFAAETL---------ELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLV 551 (902)
T ss_dssp HHTTCSSSCCEEEEEEETTTT---------EEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEE
T ss_pred hhcCCCCCCceeEEEecCCCC---------eEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccc
Confidence 6788999999999997 8999999999999998765
Q ss_pred --------------eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe------cC-CCEEEEEE
Q 011224 409 --------------KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------GN-GGIFEVCW 467 (490)
Q Consensus 409 --------------~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~------~~-~~v~~~~~ 467 (490)
+++..+.+|.++|++|+||||| +||+|+.|++|+|||+.++.++.... ++ ..|++++|
T Consensus 552 ~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~F 630 (902)
T 2oaj_A 552 DVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEF 630 (902)
T ss_dssp ECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEE
T ss_pred cccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEE
Confidence 3467788999999999999999 99999999999999998887764321 33 45999999
Q ss_pred C-----CCC---CEEEEEECCCcEEEEEe
Q 011224 468 N-----KEG---DKIAACFANHTVCVLDF 488 (490)
Q Consensus 468 ~-----~~g---~~la~~~~d~~v~v~~~ 488 (490)
+ ||| .+|++|+.|++|++||+
T Consensus 631 s~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 631 VIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9 886 89999999999999998
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.7e-41 Score=328.04 Aligned_cols=293 Identities=19% Similarity=0.344 Sum_probs=243.2
Q ss_pred eeccccccceeEEEECCC----CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 136 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~----~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
..+.+|..+|++++|+|+ ...+++++.++.|++|++.++... ..+.... ...+...|++++|+|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~----------~~~~~~~--~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI----------RLLQSYV--DADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE----------EEEEEEE--CSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE----------Eeeeecc--ccCCCCcEEEEEecc
Confidence 345689999999999994 456777777789999998765321 1111111 123567899999999
Q ss_pred C----CCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcceeEeeeeecc
Q 011224 212 E----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 212 ~----~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 285 (490)
+ +.+|++|+.||.|++|+.. +.....+.+|..+|++++|+| ++++|++|+.|++|++||+++++....+.
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---- 155 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFG---- 155 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEEC----
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEec----
Confidence 8 6799999999999999976 456677889999999999999 89999999999999999998765332211
Q ss_pred CeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc
Q 011224 286 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 365 (490)
.+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+..
T Consensus 156 ----------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 201 (366)
T 3k26_A 156 ----------------------------------GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201 (366)
T ss_dssp ----------------------------------STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH
T ss_pred ----------------------------------ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce
Confidence 1257889999999999999999999999999999998766554443
Q ss_pred ----------------------------ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--------
Q 011224 366 ----------------------------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK-------- 409 (490)
Q Consensus 366 ----------------------------~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-------- 409 (490)
|...|.+++|+ +. +|++++.||.|++||+.++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---------~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD---------LILSKSCENAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT---------EEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC---------EEEEEecCCEEEEEeCCCcccccccccc
Confidence 88899999998 32 78999999999999988763
Q ss_pred ------EEEEeeCCCCCEEEEEECCC--CCEEEEEeCCCcEEEEEcCCCe----EEEEEecC---CCEEEEEECCCCCEE
Q 011224 410 ------LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWSLKEGK----IVKTYTGN---GGIFEVCWNKEGDKI 474 (490)
Q Consensus 410 ------~~~~~~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iw~~~~~~----~~~~~~~~---~~v~~~~~~~~g~~l 474 (490)
.+..+.+|...|++++|+|+ +++|++|+.||.|++|++.+++ ....+.++ ..|.+++|+|+|++|
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 350 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL 350 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence 47788899999999999999 9999999999999999999875 44466654 679999999999999
Q ss_pred EEEECCCcEEEEEee
Q 011224 475 AACFANHTVCVLDFR 489 (490)
Q Consensus 475 a~~~~d~~v~v~~~~ 489 (490)
++|+.|+.|+|||+.
T Consensus 351 ~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 351 IAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEeCCCEEEEEEec
Confidence 999999999999985
No 42
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6.1e-41 Score=325.24 Aligned_cols=291 Identities=16% Similarity=0.242 Sum_probs=244.0
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
.+..|..+|++++|+|++++|++|+.|+.|++|++.++. ......+ ..|...|.+++|+|++++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----------~~~~~~~----~~h~~~v~~~~~~~~~~~l 67 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----------WVQVHEL----KEHNGQVTGVDWAPDSNRI 67 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----------EEEEEEE----ECCSSCEEEEEEETTTTEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----------EEeeeee----cCCCCcccEEEEeCCCCEE
Confidence 345699999999999999999999999999999987642 0112222 2457789999999999999
Q ss_pred EEEeCCCeEEEEECCCce---eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 217 ATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
++|+.||.|++|+..... ...+..|...|.+++|+|++++|++|+.|+.|++||+..+......
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~------------- 134 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC------------- 134 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceee-------------
Confidence 999999999999986543 3345779999999999999999999999999999998765421100
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEec------------------C
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM------------------K 355 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~------------------~ 355 (490)
.....+|...|.+++|+|++++|++|+.||.|++||+ .
T Consensus 135 ------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 135 ------------------------KHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 190 (372)
T ss_dssp ------------------------EEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred ------------------------eeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence 1123567889999999999999999999999999995 3
Q ss_pred CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
.+..+..+..|...+.+++|+|++. +|++++.||.|++||+++++.+..+..|..+|++++|+|++.+|++
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 261 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFSANGS---------RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA 261 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSS---------EEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE
T ss_pred hhhheEecCCCCCeEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE
Confidence 6778888889999999999999886 7999999999999999999999999999999999999999999888
Q ss_pred EeCCCcEEEEEcCC--CeE--E------------------------------------EEE-ec-CCCEEEEEEC-CCC-
Q 011224 436 GSLDKSMHIWSLKE--GKI--V------------------------------------KTY-TG-NGGIFEVCWN-KEG- 471 (490)
Q Consensus 436 ~s~dg~i~iw~~~~--~~~--~------------------------------------~~~-~~-~~~v~~~~~~-~~g- 471 (490)
| .|+.|++|++.+ ++. + ..+ .+ ...|++++|+ ++|
T Consensus 262 ~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~ 340 (372)
T 1k8k_C 262 G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA 340 (372)
T ss_dssp E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT
T ss_pred E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc
Confidence 7 899999999987 531 0 111 13 3469999977 677
Q ss_pred --CEEEEEECCCcEEEEEee
Q 011224 472 --DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 472 --~~la~~~~d~~v~v~~~~ 489 (490)
++|++|+.||+|+||+++
T Consensus 341 ~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 341 KCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp SCSEEEEEETTSEEEEEEHH
T ss_pred ceeeEEEecCCCceEEEEec
Confidence 999999999999999975
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.8e-39 Score=309.46 Aligned_cols=284 Identities=25% Similarity=0.419 Sum_probs=246.1
Q ss_pred ccccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCc------eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEE
Q 011224 196 RTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 268 (490)
Q Consensus 196 ~~~~~~~~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~------~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i 268 (490)
...+|.+.|++++|+|+ +++|+||+.|++|+||++... ....+.+|..+|.+++|+|++.+|++|+.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 34567899999999997 689999999999999997532 34578899999999999999999999999999999
Q ss_pred EEccCcceeEeeeeeccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcc-eeEecCCCCCeeEEEEcCCC--CEEEEEe
Q 011224 269 WDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTG--SLLASCS 344 (490)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~--~~l~s~~ 344 (490)
|+............+...+....+. ....+++++.|+.+++|+...... ...+.+|...+.+++|++++ .++++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 9999888777777777666666664 456788999999999999876543 34456899999999998875 5789999
Q ss_pred CCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEE
Q 011224 345 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424 (490)
Q Consensus 345 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 424 (490)
.|+.|++||+.+++.+..+.+|...|.+++|+|++. +|++|+.||.|++||+++.+.+..+..+ ..|.++
T Consensus 193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~ 262 (340)
T 4aow_A 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------LCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINAL 262 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------EEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEE
T ss_pred CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------EEEEEeCCCeEEEEEeccCceeeeecCC-ceEEee
Confidence 999999999999999999999999999999999986 8999999999999999999999988855 689999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec----------CCCEEEEEECCCCCEEEEEECCCcEEEEEeeC
Q 011224 425 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----------NGGIFEVCWNKEGDKIAACFANHTVCVLDFRM 490 (490)
Q Consensus 425 ~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~----------~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~~ 490 (490)
+|+|++.++ +++.|+.|++||+.++..+..+.. ...|++++|+|+|++||+|+.||+|+|||++.
T Consensus 263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 263 CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 999987655 556799999999999887766532 34699999999999999999999999999863
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.3e-42 Score=385.23 Aligned_cols=344 Identities=22% Similarity=0.302 Sum_probs=292.3
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCC-ce------------------eEEEEeee
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP-LN------------------VLVLKHVK 194 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~-~~------------------~~~~~~~~ 194 (490)
.+..+.+|...|++++|+|+|++|+|++.|+.|++|++.+........... .. ........
T Consensus 874 ~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1249)
T 3sfz_A 874 KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 953 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESS
T ss_pred eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCc
Confidence 345678999999999999999999999999999999976432111100000 00 00000000
Q ss_pred -cccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc
Q 011224 195 -GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 195 -~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~ 272 (490)
.........|.+++|+|+++++++|+.+|.|++|+... .....+.+|...|++++|+|++++|++++.|++|++||+.
T Consensus 954 ~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 954 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp CCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT
T ss_pred ceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 00112346799999999999999999999999999764 4566788999999999999999999999999999999999
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iw 352 (490)
++.... +..|...+.++.+.++..+++++.|+.+++|++.++..+..+.+|.+.|.+++|+|+++++++++.||+|++|
T Consensus 1034 ~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1034 TGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp TTEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred CCceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 987653 4567888999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe---------eCCCCCEEE
Q 011224 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL---------NGHREPVYS 423 (490)
Q Consensus 353 d~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~---------~~h~~~v~~ 423 (490)
|+.++.++..+..|...|.+++|+|++. +|++|+.||.|++||+.+++.+..+ .+|...|++
T Consensus 1113 d~~~~~~~~~l~~h~~~v~~~~~s~dg~---------~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1183 (1249)
T 3sfz_A 1113 SFDLLSPLHELKGHNGCVRCSAFSLDGI---------LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTD 1183 (1249)
T ss_dssp CSSSSSCSBCCCCCSSCEEEEEECSSSS---------EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCE
T ss_pred ECCCcceeeeeccCCCcEEEEEECCCCC---------EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEE
Confidence 9999999999999999999999999986 8999999999999999998876654 678899999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 424 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 424 l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++|+|+|++|++++ |.|++|++.+++.+..+..+ ..|.+++|+|+|++|++++.+|.|++|++-
T Consensus 1184 l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1184 VCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred EEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 99999999999986 89999999999988777644 458999999999999999999999999873
No 45
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=348.33 Aligned_cols=322 Identities=15% Similarity=0.131 Sum_probs=240.4
Q ss_pred cccceeEEEECCCC---------CEEE-------------------EEECCCcEEEEecCCCCCCCCCCCCCceeEEEEe
Q 011224 141 HTSEVCACAWSPAG---------SLLA-------------------SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH 192 (490)
Q Consensus 141 H~~~V~~~~~sp~~---------~~l~-------------------sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~ 192 (490)
+.+.|.+|+|+|++ ++|| ||+.|++|+||++.++... ......
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~---------~~~~~~ 202 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH---------CVKVQT 202 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC---------EEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC---------ceEEEE
Confidence 56677777777765 4454 4668899999998765321 000011
Q ss_pred eecccccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEECCCce------------eEEecCCCCCEEEEEecCCC
Q 011224 193 VKGRTNEKSKDVTTLDWNGE------GTLLATGSYDGQARIWSTNGDL------------KCTLSKHKGPIFSLKWNKKG 254 (490)
Q Consensus 193 ~~~~~~~~~~~V~~~~~s~~------~~~l~sg~~dg~i~iw~~~~~~------------~~~~~~h~~~V~~l~~~~~~ 254 (490)
+ ..+...|.+++|+|+ +.+|++|+.||+|+||++.... ...+.+|...|++++|+++
T Consensus 203 l----~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~- 277 (524)
T 2j04_B 203 I----VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP- 277 (524)
T ss_dssp E----EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-
T ss_pred E----EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-
Confidence 1 123567999999996 5799999999999999986431 2367889999999999986
Q ss_pred CEEEEEeCCCeEEEEEccCcc-eeEeeeeeccCeEEE--EccCC--ceEEEEcCCCeEEEEEcCCCcceeEecCCCC--C
Q 011224 255 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDV--DWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--E 327 (490)
Q Consensus 255 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~--~ 327 (490)
..|++|+.||+|++||++++. ....+..|..+|.++ .|.++ ..+++++.|++|++||++..+++..+.+|.. .
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 489999999999999998764 445678899999998 45554 5789999999999999998887777777764 5
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 328 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 328 v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
|.+++|+|+++.+++++.|++|++||++++.++..+.+|...|++++|+|++. +|++|+.||+|++||+..
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~---------~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP---------MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC---------BCEEEETTTEEECCBSCS
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC---------eEEEEECCCEEEEEechH
Confidence 88999999999999999999999999999998888999999999999999986 689999999999999864
Q ss_pred CeEEEEeeC-----CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeEEEEEecC-CCEEEEEECCCCC---EEEEE
Q 011224 408 GKLLYSLNG-----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTGN-GGIFEVCWNKEGD---KIAAC 477 (490)
Q Consensus 408 ~~~~~~~~~-----h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~-~~~~~~~~~~~-~~v~~~~~~~~g~---~la~~ 477 (490)
+ .+..++. +...|++++|+|+|..+. ... .+++|... ++.++.++.++ ..|++++|+|++. .||+|
T Consensus 429 ~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg 504 (524)
T 2j04_B 429 R-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFS 504 (524)
T ss_dssp S-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEE
T ss_pred h-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhh
Confidence 3 2111111 122578999999998653 222 23444433 45666666654 5699999999964 99999
Q ss_pred ECCCcEEEEEee
Q 011224 478 FANHTVCVLDFR 489 (490)
Q Consensus 478 ~~d~~v~v~~~~ 489 (490)
+.+|.|+||+++
T Consensus 505 ~~~g~vrlw~l~ 516 (524)
T 2j04_B 505 NSAGLLTLEYLS 516 (524)
T ss_dssp CTTSEEEEEECS
T ss_pred ccCceEEEEEcc
Confidence 999999999986
No 46
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-40 Score=312.61 Aligned_cols=254 Identities=25% Similarity=0.408 Sum_probs=209.2
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC--
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 212 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-- 212 (490)
+.++.+|...|++++|+|+|++||||+.|++|+||++...... .+. ...+|..+|.+++|+++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~-----------~~~----~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK-----------LID----TLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC-----------CCE----EECCCSSCEEEEEECCGGG
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE-----------EEE----EEccccCCeEEEEecCCCc
Confidence 3568899999999999999999999999999999998643110 011 22356789999999874
Q ss_pred CCEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 213 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
+++|++|+.|++|+||+.... ....+.+|...|.+++|+|+ +.+|++|+.|++|++||+++....
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---------- 136 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---------- 136 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----------
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----------
Confidence 899999999999999998653 44567889999999999997 889999999999999998764210
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-------------CCEEEEEeCCCeEEEEec
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-------------GSLLASCSDDVTAKIWNM 354 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-------------~~~l~s~~~dg~i~iwd~ 354 (490)
....+.+|...|.+++|+|+ +++|++|+.|++|+|||+
T Consensus 137 -----------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 137 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp -----------------------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEE
T ss_pred -----------------------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEE
Confidence 01234578888888899886 579999999999999999
Q ss_pred CCCc----eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe---EEEEe--eCCCCCEEEEE
Q 011224 355 KQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSL--NGHREPVYSLA 425 (490)
Q Consensus 355 ~~~~----~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---~~~~~--~~h~~~v~~l~ 425 (490)
+++. ....+.+|...|.+++|+|++. ...+|++|+.|++|+|||++... ....+ .+|...|++++
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDVAWSPTVL------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCS------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEE
T ss_pred cCCCceEEEEEEecCCCCceEEEEECCCCC------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEE
Confidence 8765 5667889999999999999851 01389999999999999987642 22233 56788999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcC
Q 011224 426 FSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 426 ~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
|+|+|++||+|+.|++|+||+..
T Consensus 262 ~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 262 WSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCCCEEEEEcCCCcEEEEEEC
Confidence 99999999999999999999976
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-40 Score=311.64 Aligned_cols=288 Identities=26% Similarity=0.367 Sum_probs=250.5
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
....++.+|.+.|++++| |++.+|++|+.||.|++|++.++.. .... ..+...|.+++|+|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~~~~ 70 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL-------------GTVV----YTGQGFLNSVCYDSE 70 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE-------------EEEE----EECSSCEEEEEEETT
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE-------------EEEe----ecCCccEEEEEECCC
Confidence 345788999999999999 9999999999999999999865421 1111 234678999999999
Q ss_pred CCEEEEEeCCCeEEEEECCC----ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 213 GTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
+++|++|+.||.|++|++.. .....+.+|...|.+++| ++++|++++.|++|++|| .+.....+..|..++.
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVW 146 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEE
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCcee
Confidence 99999999999999999753 345677899999999999 567999999999999999 6667778888889998
Q ss_pred EEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc
Q 011224 289 DVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 289 ~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 365 (490)
.+.+. +...+++++.|+.|++|+ ....+..+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc
Confidence 88874 577889999999999999 4556667777 899999999999998 89999999999999999999999999
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 445 (490)
|...+.+++|+|++. |++++.||.|++||+.+++.+..+..|..+|++++|+|+++ +++++.||.|++|
T Consensus 224 ~~~~i~~~~~~~~~~----------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 224 HESFVYCIKLLPNGD----------IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp CSSCEEEEEECTTSC----------EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred CCceEEEEEEecCCC----------EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence 999999999999873 78999999999999999999999999999999999999998 5678999999999
Q ss_pred EcCCCeEEEEE
Q 011224 446 SLKEGKIVKTY 456 (490)
Q Consensus 446 ~~~~~~~~~~~ 456 (490)
++.+++.+...
T Consensus 293 ~~~~~~~~~~~ 303 (313)
T 3odt_A 293 SQEKSRWASED 303 (313)
T ss_dssp ESCGGGCCC--
T ss_pred eCCCCceeehh
Confidence 99988765443
No 48
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.6e-40 Score=322.21 Aligned_cols=281 Identities=18% Similarity=0.306 Sum_probs=253.6
Q ss_pred cccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-------eeEEecCCCCCEEEEEecCC----C---CEEEEEeC
Q 011224 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-------LKCTLSKHKGPIFSLKWNKK----G---DYLLTGSC 262 (490)
Q Consensus 197 ~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-------~~~~~~~h~~~V~~l~~~~~----~---~~l~s~s~ 262 (490)
..+|...|++++|+| ++|++|+.||.|++|+.... ....+.+|..+|++++|+|+ + .+|++++.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~ 89 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 89 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence 346788999999999 89999999999999998754 36778899999999999999 9 99999999
Q ss_pred CCeEEEEEccCcce-----eEeeeee-----ccCeEEEEcc----C-Cce-EEEEcCCCeEEEEEcCC------Cccee-
Q 011224 263 DKTAIVWDVKTEEW-----KQQFEFH-----SGPTLDVDWR----N-NVS-FATSSTDNMIYVCKIGE------NRPIK- 319 (490)
Q Consensus 263 D~~v~iwd~~~~~~-----~~~~~~~-----~~~~~~~~~~----~-~~~-~~~~~~d~~i~~~~~~~------~~~~~- 319 (490)
|+.|++||+.++.. ...+..| ...+.++.|. + ... +++++.|+.|++|++.. ...+.
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 169 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 169 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeec
Confidence 99999999998886 7777777 5889999987 4 445 88899999999999988 66665
Q ss_pred ----Ee-------cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc---c---cccEEEEEEcCCCCCC
Q 011224 320 ----TF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---H---SKEIYTIRWSPTGSGT 382 (490)
Q Consensus 320 ----~~-------~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~---~~~i~~v~~~p~g~~~ 382 (490)
.+ ..|...|.+++|+|++ +|++|+.||.|++||+++++.+..+.. | ...+.+++|+|++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-- 246 (397)
T 1sq9_A 170 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-- 246 (397)
T ss_dssp CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT--
T ss_pred cCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC--
Confidence 66 4488999999999999 999999999999999999999999888 8 99999999999886
Q ss_pred CCCCCcEEEEEEECC---CcEEEEeCCCCeEEEEeeC-------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 383 NNPNQQLILASASFD---STVKLWDVELGKLLYSLNG-------------HREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 383 ~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~-------------h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
+|++++.| |.|++||+++++.+..+.+ |...|++++|+|++++|++|+.||.|++|+
T Consensus 247 -------~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 247 -------LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp -------EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred -------EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 78999999 9999999999999999998 999999999999999999999999999999
Q ss_pred cCCCeEEEEEe------c----------------CCCEEEEEECCCC----------CEEEEEECCCcEEEEEee
Q 011224 447 LKEGKIVKTYT------G----------------NGGIFEVCWNKEG----------DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 447 ~~~~~~~~~~~------~----------------~~~v~~~~~~~~g----------~~la~~~~d~~v~v~~~~ 489 (490)
+.+++.+..+. . ...|.+++|+|+| ++|++|+.|+.|+||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 99999999888 4 4569999999999 799999999999999986
No 49
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.2e-41 Score=334.84 Aligned_cols=287 Identities=18% Similarity=0.290 Sum_probs=231.7
Q ss_pred eeccccccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CC
Q 011224 136 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG 213 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~ 213 (490)
..+.+|...|+||+|||. +.+||+|+.||.|+|||+.++... ... ...+|...|++++|+| ++
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-----------~~~----~~~gH~~~V~~l~f~p~~~ 177 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-----------TFI----KGIGAGGSITGLKFNPLNT 177 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-----------EEE----CCCSSSCCCCEEEECSSCT
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-----------eEE----EccCCCCCEEEEEEeCCCC
Confidence 456689999999999994 679999999999999998765321 111 2235678999999998 78
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEecC---CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 214 TLLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
.+|++|+.||+|+|||+.+.....+.. +...+.+++|+|++.+|++|+.||+|++||++...
T Consensus 178 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~--------------- 242 (435)
T 4e54_B 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE--------------- 242 (435)
T ss_dssp TEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB---------------
T ss_pred CEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce---------------
Confidence 999999999999999998765544433 34467899999999999999999999999985421
Q ss_pred EccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeee---eccc
Q 011224 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHD---LREH 366 (490)
Q Consensus 291 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~---~~~~ 366 (490)
+..+.+|...|++++|+|++. +|++|+.|++|+|||+++.+.... ...|
T Consensus 243 ---------------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h 295 (435)
T 4e54_B 243 ---------------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPH 295 (435)
T ss_dssp ---------------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBC
T ss_pred ---------------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeec
Confidence 234668999999999999986 788999999999999987765433 3568
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC------CEEEEEECCCCCEEEEEe---
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEYLASGS--- 437 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~spdg~~l~s~s--- 437 (490)
...|.+++|+|++. +|++|+.||.|+|||+.++.....+..|.. .+..+.|+|++.++++++
T Consensus 296 ~~~v~~~~~spdg~---------~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 366 (435)
T 4e54_B 296 RHPVNAACFSPDGA---------RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPD 366 (435)
T ss_dssp SSCEEECCBCTTSS---------EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCC
T ss_pred cccccceeECCCCC---------eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCC
Confidence 89999999999986 899999999999999999888777766542 234457778777777664
Q ss_pred ---------CCCcEEEEEcCCCeEEEEEec--CCCEEEE-EECCCCCEEEEEECCCcEEEEEee
Q 011224 438 ---------LDKSMHIWSLKEGKIVKTYTG--NGGIFEV-CWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 438 ---------~dg~i~iw~~~~~~~~~~~~~--~~~v~~~-~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.++.|++|+..+|+++..+.. ...|.++ +|+|+|++||+|+ |++|+|||++
T Consensus 367 ~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 367 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp TTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred CCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence 236799999999999887743 3457776 6999999999876 7899999975
No 50
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.7e-40 Score=309.82 Aligned_cols=248 Identities=19% Similarity=0.323 Sum_probs=224.7
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEc
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKI 312 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~ 312 (490)
...++.+|.+.|++++|+|++.+|++|+.||+|++||+.++.....+..|..++.++.|.+ ...+++++.|+.|++|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 4567889999999999999999999999999999999999999999999999999998864 567889999999999999
Q ss_pred CCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC-ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 313 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 313 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
.++..+..+.+|...|.+++|+|++++|++|+.|++|++||+.++ .....+.+|...|.+++|+|... .+|
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~--------~~l 156 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP--------STF 156 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCT--------TEE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCC--------CEE
Confidence 999999999999999999999999999999999999999999877 45567889999999999999532 279
Q ss_pred EEEECCCcEEEEeCCCCeEEEEee-CCCCCEEEEEECC--CCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEE
Q 011224 392 ASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCW 467 (490)
Q Consensus 392 ~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp--dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~ 467 (490)
++|+.||+|++||++.+.....+. +|...|..++|+| ++++|++|+.|++|++||+.+++++.++.++. .|..++|
T Consensus 157 ~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 157 ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 999999999999998877666654 5668899999987 77899999999999999999999999998764 5999999
Q ss_pred CCCCCEEEEEECCCcEEEEEee
Q 011224 468 NKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+|++.+||+|+.|++|+|||++
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999999999999975
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=320.14 Aligned_cols=293 Identities=19% Similarity=0.335 Sum_probs=242.1
Q ss_pred eeeccccccceeEEEECCCCCEE-EEEEC---CCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 135 VTILEGHTSEVCACAWSPAGSLL-ASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l-~sgs~---D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
..++.+|...|++++|+|++..+ ++|+. |+.|++|++.++... .... ..|...|.+++|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-----------~~~~-----~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-----------LLRE-----IEKAKPIKCGTFG 74 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-----------EEEE-----EEESSCEEEEECT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-----------ceee-----ecccCcEEEEEEc
Confidence 35678899999999999998654 56665 999999999765311 1111 1346789999999
Q ss_pred CC---CCEEEEEeCCCeEEEEECCCc--eeEEecCCCCCEEEEE------ecCCCCEEEEEeCCCeEEEEEccCcc-eeE
Q 011224 211 GE---GTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLK------WNKKGDYLLTGSCDKTAIVWDVKTEE-WKQ 278 (490)
Q Consensus 211 ~~---~~~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l~------~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~ 278 (490)
|+ +.+|++|+.||.|++|+.... ....+.+|...|.++. |+|++++|++|+.|++|++||++++. ...
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 98 799999999999999998743 5678889999999995 56889999999999999999999886 666
Q ss_pred eeeeecc----CeEEEE----c-cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC---CCCEEEEEeCC
Q 011224 279 QFEFHSG----PTLDVD----W-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP---TGSLLASCSDD 346 (490)
Q Consensus 279 ~~~~~~~----~~~~~~----~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~d 346 (490)
.+..+.+ .+.++. | .+...+++++.++.|++|++....... ...|...|.+++|+| ++.+|++|+.|
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLE 233 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence 6665554 677776 3 355678889999999999999887643 467889999999999 99999999999
Q ss_pred CeEEEEecCCCceeeeec-----cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC-------------
Q 011224 347 VTAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------------- 408 (490)
Q Consensus 347 g~i~iwd~~~~~~~~~~~-----~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~------------- 408 (490)
|.|++||+++++.+..+. .|...|++++|+|++. .+|++|+.||.|++||++.+
T Consensus 234 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR--------ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE--------EEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC--------cEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 999999998877665554 8999999999999874 37999999999999998753
Q ss_pred ------eEEEEeeCCCCCEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeE
Q 011224 409 ------KLLYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 409 ------~~~~~~~~h~~~v~~l~~spdg~~l~-s~s~dg~i~iw~~~~~~~ 452 (490)
+.+..+.+|..+|++++|+|++++|+ +|+.||.|++|++.+..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 46778899999999999999999998 899999999999987654
No 52
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-39 Score=312.76 Aligned_cols=244 Identities=23% Similarity=0.489 Sum_probs=220.3
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
+|...|++++|+|++++|++|+.||+|+||+.. +.....+..|...|.+++|+|++++|++|+.|+.|++||+.+....
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 467889999999999999999999999999975 4556678899999999999999999999999999999998764310
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
......+.+|.+.|.++.|++++. +++++.|++|++||+.++
T Consensus 133 -------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~ 174 (340)
T 1got_B 133 -------------------------------------VRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG 174 (340)
T ss_dssp -------------------------------------CEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT
T ss_pred -------------------------------------ceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC
Confidence 012345678999999999998875 889999999999999999
Q ss_pred ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEe
Q 011224 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 358 ~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s 437 (490)
+.+..+.+|...|.+++|+|++. +|++|+.||.|++||++++.++..+.+|...|++++|+|++++|++|+
T Consensus 175 ~~~~~~~~h~~~v~~~~~~~~~~---------~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 245 (340)
T 1got_B 175 QQTTTFTGHTGDVMSLSLAPDTR---------LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTSS---------EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEcCCCCceEEEEECCCCC---------EEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc
Confidence 99999999999999999999886 899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEEecC---CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 438 LDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 438 ~dg~i~iw~~~~~~~~~~~~~~---~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.||+|++||+++++.+..+... ..|.+++|+|+|++|++|+.|+.|+|||++
T Consensus 246 ~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 9999999999999888777643 369999999999999999999999999975
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=318.30 Aligned_cols=342 Identities=17% Similarity=0.223 Sum_probs=244.4
Q ss_pred ceeeccccccceeEEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-
Q 011224 134 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 211 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~- 211 (490)
....+++|.+.|++++|+| ++++|++|+.||.|++|++.++......... ........+...|...|.+++|+|
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECTT
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEccC
Confidence 3467889999999999999 9999999999999999999876543221100 000111122345788999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCC---CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 212 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
++.+|++++.||.|++|+...........+...+.++.|+|.+ .++++++.|+.|++||++++.....+..|..++.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 7889999999999999998876555445588899999999854 4999999999999999999999999999999999
Q ss_pred EEEccCCc--eEEEEcCCCeEEEEEcCCCc-ceeEe---------------cCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Q 011224 289 DVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTF---------------AGHQGEVNCVKWDPTGSLLASCSDDVTAK 350 (490)
Q Consensus 289 ~~~~~~~~--~~~~~~~d~~i~~~~~~~~~-~~~~~---------------~~h~~~v~~v~~~~~~~~l~s~~~dg~i~ 350 (490)
++.|.++. .+++++.|+.|++|++.... ++..+ .+|...|.+++|+|++++|++++.||.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 99997654 58899999999999997654 33333 57889999999999999999999999999
Q ss_pred EEecCCCceeeeeccccc----cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEE
Q 011224 351 IWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 351 iwd~~~~~~~~~~~~~~~----~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 426 (490)
+||+.+++....+..+.. ....+.+..... ..+++++.++.|++||+.+++.+..+.+|...|++++|
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 342 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS--------SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVF 342 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSS--------SCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCC--------ceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEE
Confidence 999998876544332211 011111111111 13566778999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCC-CEEEEEECCCcEEEEEee
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEG-DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g-~~la~~~~d~~v~v~~~~ 489 (490)
+|++++|++|+.||.|++|++.+++.+....... ....++|.. ...+++..++.+.+|+..
T Consensus 343 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 343 QSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT--TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred cCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE--eccccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999988765543322 223344433 355567778999999764
No 54
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-40 Score=323.56 Aligned_cols=247 Identities=27% Similarity=0.468 Sum_probs=232.6
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEc
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKI 312 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~ 312 (490)
....+.+|.++|++++|+|++.+|++|+.|++|++||+.+++....+..|...+.++.|.+ ...+++++.|+.|++|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 3456789999999999999999999999999999999999999999999999999999965 457889999999999999
Q ss_pred CCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEE
Q 011224 313 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 313 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
.....+..+.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+.+|...+.++.|+|++. +|+
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---------~l~ 250 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---------LIA 250 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------EEE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------EEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 899
Q ss_pred EEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCC--------------------CCEEEEEeCCCcEEEEEcCCCeE
Q 011224 393 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT--------------------GEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 393 sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd--------------------g~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
+|+.||+|++||+.++++...+.+|...|++++|+|+ |.+|++|+.|++|++||+.++..
T Consensus 251 s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 251 SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 9999999999999999999999999999999999996 67899999999999999999999
Q ss_pred EEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 453 VKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 453 ~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.++.++. .|.+++|+|+|++|++|+.|++|+|||++
T Consensus 331 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 98887754 59999999999999999999999999975
No 55
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-38 Score=304.61 Aligned_cols=285 Identities=18% Similarity=0.334 Sum_probs=249.5
Q ss_pred ccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 138 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
..+|...|++++|+|++++|++++ |+.|++|++.++...... . .. ....+...|.+++|+|++++|+
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~-------~---~~--~~~~~~~~v~~~~~~~~~~~l~ 113 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV-------S---QL--DCLNRDNYIRSCKLLPDGCTLI 113 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS-------E---EE--ECSCTTSBEEEEEECTTSSEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee-------e---cc--cccCCCCcEEEEEEcCCCCEEE
Confidence 447999999999999999999999 999999999765422110 0 01 1123567899999999999999
Q ss_pred EEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 218 TGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 218 sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
+++.|+.|++|+.... ....+..|...|++++|+|++++|++++.|+.|++||+++++....+..|...+.++.|.+
T Consensus 114 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence 9999999999998754 3456788999999999999999999999999999999999998888888999999999975
Q ss_pred -CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 295 -NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 295 -~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
...+++++.|+.|++|++.....+..+. |...+.+++|+|++++|++++.|+.|++||+.++... .+..|...+.++
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~ 271 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL 271 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE
Confidence 4578889999999999999888777664 7788999999999999999999999999999887654 567889999999
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
+|+|++. +|++++.||.|++||+.+++.+.... |...|++++|+|++++|++++.||.|++|++
T Consensus 272 ~~~~~~~---------~l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 272 KFAYCGK---------WFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EECTTSS---------EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCC---------EEEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999986 78999999999999999998886554 7889999999999999999999999999996
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-41 Score=330.99 Aligned_cols=288 Identities=16% Similarity=0.186 Sum_probs=227.2
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
.+..|..+|++++|+|++++|++|+.|+.|++|++.++.. ........|...|.+++|+|++++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~s~~~~~l 70 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDWAPKSNRI 70 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEECTTTCCE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEEeCCCCEE
Confidence 3445778999999999999999999999999999875410 1112233567889999999999999
Q ss_pred EEEeCCCeEEEEECCCce----eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 217 ATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~~~----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
++|+.|+.|++|+..... ...+.+|...|++++|+|++++|++|+.|++|++||++++...
T Consensus 71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------------- 135 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--------------- 135 (377)
T ss_dssp EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---------------
T ss_pred EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---------------
Confidence 999999999999987543 5677889999999999999999999999999999998765310
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC----------------
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK---------------- 355 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~---------------- 355 (490)
.....+.+ |...|.+++|+|++++|++|+.|++|++||+.
T Consensus 136 -----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 136 -----------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp -----------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred -----------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 11234555 89999999999999999999999999999985
Q ss_pred --CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE----EEEeeCCCCCEEEEEECCC
Q 011224 356 --QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL----LYSLNGHREPVYSLAFSPT 429 (490)
Q Consensus 356 --~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spd 429 (490)
.+.++..+ .|...|.+++|+|++. +|++|+.||.|++||+.+++. +..+.+|..+|++++|+|+
T Consensus 193 ~~~~~~~~~~-~~~~~v~~~~~sp~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 262 (377)
T 3dwl_C 193 LPFNTVCAEY-PSGGWVHAVGFSPSGN---------ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE 262 (377)
T ss_dssp CCEEEEEECC-CCSSSEEEEEECTTSS---------CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET
T ss_pred cchhhhhhcc-cCCceEEEEEECCCCC---------EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC
Confidence 34556666 8899999999999986 799999999999999998876 7788999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCe--E-------------------------E---------EEEe----------------
Q 011224 430 GEYLASGSLDKSMHIWSLKEGK--I-------------------------V---------KTYT---------------- 457 (490)
Q Consensus 430 g~~l~s~s~dg~i~iw~~~~~~--~-------------------------~---------~~~~---------------- 457 (490)
+++|++|+.++.+ +|+...+. . . ..+.
T Consensus 263 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 341 (377)
T 3dwl_C 263 SAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT 341 (377)
T ss_dssp TEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred CCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence 9999999877766 66654211 0 0 0010
Q ss_pred -cCCCEEEEEECCCC-C---EEEEEECCCcEEEEEe
Q 011224 458 -GNGGIFEVCWNKEG-D---KIAACFANHTVCVLDF 488 (490)
Q Consensus 458 -~~~~v~~~~~~~~g-~---~la~~~~d~~v~v~~~ 488 (490)
+...|+++++.+.. . .|++|+.||.|+|||+
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 33468999976643 3 6999999999999986
No 57
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=327.82 Aligned_cols=298 Identities=14% Similarity=0.277 Sum_probs=233.9
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCC------------CCeEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS------------KDVTTL 207 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~V~~~ 207 (490)
.|.+.|++++|+|+|.+||+|+.||.|+||++.++.......... ......+. +|. ..|+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~~~----~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGE--YNVYSTFQ----SHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCC--EEEEEEEE----CCCCEEEGGGTEEECCCCCEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccc--eeEecccc----cccccccccccccccCceEEE
Confidence 378899999999999999999999999999998764321111111 11222222 234 779999
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEECCCcee-----------------------------------------EEecCCCCC
Q 011224 208 DWNGEG--TLLATGSYDGQARIWSTNGDLK-----------------------------------------CTLSKHKGP 244 (490)
Q Consensus 208 ~~s~~~--~~l~sg~~dg~i~iw~~~~~~~-----------------------------------------~~~~~h~~~ 244 (490)
+|+|++ .+|++++.|+.|++|+...... ....+|...
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 999998 8999999999999999754211 113679999
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEEccCcc-eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC
Q 011224 245 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 323 (490)
Q Consensus 245 V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 323 (490)
|++++|+|++++|++| .|++|++||+++.. .... .... ...+.+
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~------------------------------~~~~----~~~~~~ 224 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNI------------------------------VDIK----PANMEE 224 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEE------------------------------EECC----CSSGGG
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeee------------------------------eecc----cccccc
Confidence 9999999999999998 79999999997432 1111 1111 113568
Q ss_pred CCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCce----eeeeccccc------------cEEEEEEcCCCCCCCCCC
Q 011224 324 HQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY----VHDLREHSK------------EIYTIRWSPTGSGTNNPN 386 (490)
Q Consensus 324 h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~------------~i~~v~~~p~g~~~~~~~ 386 (490)
|...|.+++|+|++ ++|++|+.||+|++||++++.. +..+..|.. .|.+++|+|++.
T Consensus 225 ~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~------ 298 (447)
T 3dw8_B 225 LTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR------ 298 (447)
T ss_dssp CCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS------
T ss_pred cCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC------
Confidence 99999999999998 9999999999999999998886 677777765 899999999986
Q ss_pred CcEEEEEEECCCcEEEEeCCC-CeEEEEeeCCCCC---------------EEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 387 QQLILASASFDSTVKLWDVEL-GKLLYSLNGHREP---------------VYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 387 ~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
+|++++. +.|++||+++ ++++..+.+|... +..++|+|++++|++|+.||.|++||+.++
T Consensus 299 ---~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 299 ---YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp ---EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ---EEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 7888988 9999999997 8888888888642 334999999999999999999999999998
Q ss_pred eEEEEEe---------------------------------cCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 451 KIVKTYT---------------------------------GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 451 ~~~~~~~---------------------------------~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.+.... ....|..++|+|+|++||+++.++ +.+|..+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 375 RDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 8764221 123578899999999999998875 8888755
No 58
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.3e-39 Score=304.60 Aligned_cols=252 Identities=24% Similarity=0.436 Sum_probs=207.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---ceeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEccC
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~ 273 (490)
+|...|.+++|+|+|++|++|+.|++|+||+..+ .....+.+|.++|++++|+|. +++|++|+.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 4678899999999999999999999999999863 456788999999999999863 88999999999999999876
Q ss_pred cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEE
Q 011224 274 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKI 351 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~i 351 (490)
+.+ ..+..+.+|...|.+++|+|+ +.+|++|+.|++|++
T Consensus 87 ~~~---------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 87 GRW---------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127 (297)
T ss_dssp SCB---------------------------------------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred Cce---------------------------------------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence 532 112345678899999999998 899999999999999
Q ss_pred EecCCCce--eeeeccccccEEEEEEcCCCCCCC----CCCCcEEEEEEECCCcEEEEeCCCCe----EEEEeeCCCCCE
Q 011224 352 WNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTN----NPNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPV 421 (490)
Q Consensus 352 wd~~~~~~--~~~~~~~~~~i~~v~~~p~g~~~~----~~~~~~~l~sgs~dg~i~iwd~~~~~----~~~~~~~h~~~v 421 (490)
||+++... ...+..|...|.+++|+|++.... .+....+|++|+.|++|++||++++. ....+.+|...|
T Consensus 128 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp EEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred EEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 99987632 355678999999999999742100 00012379999999999999998765 667889999999
Q ss_pred EEEEECCCC---CEEEEEeCCCcEEEEEcCCCe--E-EEEE--e-cCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 422 YSLAFSPTG---EYLASGSLDKSMHIWSLKEGK--I-VKTY--T-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 422 ~~l~~spdg---~~l~s~s~dg~i~iw~~~~~~--~-~~~~--~-~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++|+|+|++ .+||+|+.|++|+||++.++. . ...+ . ....|++++|+|+|++||+++.|++|+||+..
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999995 899999999999999998643 1 2222 1 23569999999999999999999999999875
No 59
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.1e-40 Score=316.23 Aligned_cols=252 Identities=21% Similarity=0.287 Sum_probs=207.3
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
...+|...|++++|+|++. +++++.||+|+|||+.++...... .....+|...|++++|+|++++|
T Consensus 89 ~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~-------------~~~~~~h~~~V~~v~~spdg~~l 154 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVN-------------KFAKYEHDDIVKTLSVFSDGTQA 154 (357)
T ss_dssp EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCC-------------CEEECCCSSCEEEEEECSSSSEE
T ss_pred ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEE-------------eeccCCCCCCEEEEEECCCCCEE
Confidence 4457999999999999986 456889999999999776432110 01123467889999999999999
Q ss_pred EEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 217 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
++|+.|+.|++||... .....+.+|...|++++|+|++. +|++++.|++|++||+++++....+
T Consensus 155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-------------- 220 (357)
T 4g56_B 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-------------- 220 (357)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC--------------
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee--------------
Confidence 9999999999999875 45668899999999999999875 7899999999999999876532211
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
.+..|...+.+++|+|++ .+|++|+.|+.|++||+++++++..+..|...|+++
T Consensus 221 -------------------------~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 221 -------------------------DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp -------------------------CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred -------------------------eeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 233466789999999984 689999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEEcCCC
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iw~~~~~ 450 (490)
+|+|++. .+|++|+.||+|+|||+++++++..+ +|...|++|+||| ++.+|||||.||+|++|++...
T Consensus 276 ~~sp~~~--------~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 276 AYSYHSS--------PFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSS--------CCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEcCCCC--------CEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999874 27899999999999999998877655 7999999999999 7999999999999999998653
No 60
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-39 Score=310.92 Aligned_cols=256 Identities=29% Similarity=0.515 Sum_probs=207.5
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
...+|...|++++|+|++++|++|+.|++|++|++..+. ...+.. ..+|...|.+++|+|++++|
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-----------~~~~~~----~~~h~~~v~~v~~sp~~~~l 120 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-----------FECVTT----LEGHENEVKSVAWAPSGNLL 120 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC------------EEEEEE----ECCCSSCEEEEEECTTSSEE
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-----------eEEEEE----ccCCCCCceEEEEeCCCCEE
Confidence 347899999999999999999999999999999986532 111222 23467889999999999999
Q ss_pred EEEeCCCeEEEEECCCc----eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 217 ATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
++|+.|+.|++|++... ....+.+|...|.+++|+|++.+|++|+.|++|++||++++.+.
T Consensus 121 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~--------------- 185 (345)
T 3fm0_A 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV--------------- 185 (345)
T ss_dssp EEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---------------
T ss_pred EEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---------------
Confidence 99999999999997643 34567899999999999999999999999999999998765321
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC---------------
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--------------- 357 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~--------------- 357 (490)
++..+.+|...|.+++|+|++++|++|+.|++|+||+....
T Consensus 186 ------------------------~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 186 ------------------------CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp ------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred ------------------------EEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 12356789999999999999999999999999999996322
Q ss_pred ceeeeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe---------EEEEeeCCCCCEEEEEEC
Q 011224 358 KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFS 427 (490)
Q Consensus 358 ~~~~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~s 427 (490)
+++..+.. |...|++++|+|++. +|++++.|+.|++|+...+. ......+|...|++|+|+
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~---------~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTG---------ALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTC---------CEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred ceeEEecCCCCCcEEEEEEecCCC---------EEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence 22333443 778999999999886 68999999999999986542 122346899999999999
Q ss_pred CCC-CEEEEEeCCCcEEEEEcCCCeEEEE
Q 011224 428 PTG-EYLASGSLDKSMHIWSLKEGKIVKT 455 (490)
Q Consensus 428 pdg-~~l~s~s~dg~i~iw~~~~~~~~~~ 455 (490)
|++ .+||+||.||+|++|++.+++.+..
T Consensus 313 p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 313 PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp SSSTTEEEEEETTSCEEEEEECC------
T ss_pred CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 998 5999999999999999998776544
No 61
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.8e-39 Score=303.80 Aligned_cols=248 Identities=26% Similarity=0.400 Sum_probs=217.2
Q ss_pred ccccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC------ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEE
Q 011224 196 RTNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 268 (490)
Q Consensus 196 ~~~~~~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i 268 (490)
...+|...|++++|+|++ ++|++|+.|++|++|+... .....+.+|...|.+++|+|++.+|++|+.|++|++
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 345678899999999965 8999999999999999753 234578899999999999999999999999999999
Q ss_pred EEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCe
Q 011224 269 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348 (490)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 348 (490)
||+.+++. +..+.+|...|.+++|+|++.+|++|+.|++
T Consensus 92 wd~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~ 130 (319)
T 3frx_A 92 WDVATGET-----------------------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130 (319)
T ss_dssp EETTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTSC
T ss_pred EECCCCCe-----------------------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 99987643 2346689999999999999999999999999
Q ss_pred EEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 349 i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
|++||++ +.++..+.+|...+.+++|.|..... ....+|++|+.|+.|++||+++++....+.+|..+|++++|+|
T Consensus 131 i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 131 IKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD---DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP 206 (319)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEECCC---------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT
T ss_pred EEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC---CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC
Confidence 9999996 45677888999999999999865321 1123789999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 429 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+|++|++|+.||+|++||+.+++.+..+..+..|.+++|+|+|.+|+++..+ .+.||++.
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 9999999999999999999999999999888889999999999999988765 59999864
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.3e-39 Score=315.45 Aligned_cols=287 Identities=20% Similarity=0.369 Sum_probs=240.0
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
....+|...+.+.++++++..+++++.|+.|++|++.++... .... ..+...|++++|+|++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~-------------~~~~---~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVS-------------ALAE---TDESTYVASVKWSHDGSF 148 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEE-------------EEEE---CCTTCCEEEEEECTTSSE
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEe-------------Eeee---cCCCCCEEEEEECCCCCE
Confidence 344578776555444444466889999999999999776421 1111 125678999999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 216 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
|++|+.||.|++|+... .....+.+|...|.+++|+ +++|++|+.|++|++||++...
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~------------------- 207 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN------------------- 207 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS-------------------
T ss_pred EEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc-------------------
Confidence 99999999999999764 5667888999999999994 5799999999999999987432
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 374 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 374 (490)
..+..+.+|.+.|.+++|+|++++|++|+.||.|++||++++..+..+..|...|.+++
T Consensus 208 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~ 266 (401)
T 4aez_A 208 ---------------------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266 (401)
T ss_dssp ---------------------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred ---------------------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence 12345667999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCcEEEEEEE--CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEE--eCCCcEEEEEcCCC
Q 011224 375 WSPTGSGTNNPNQQLILASAS--FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG--SLDKSMHIWSLKEG 450 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~--s~dg~i~iw~~~~~ 450 (490)
|+|++. .++++|+ .|+.|++||+.+++.+..+. +...|++++|+|++++|+++ +.||.|++|++.++
T Consensus 267 ~~p~~~--------~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 267 WCPWQS--------NLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp ECTTST--------TEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred ECCCCC--------CEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 999875 2677766 79999999999999998887 56789999999999999995 48999999999997
Q ss_pred eEEEE--Eec-CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 451 KIVKT--YTG-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 451 ~~~~~--~~~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.... +.+ ...|.+++|+|+|++|++++.|++|++|++.
T Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 76554 334 4569999999999999999999999999985
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-38 Score=299.39 Aligned_cols=274 Identities=23% Similarity=0.323 Sum_probs=244.8
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc--
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-- 274 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-- 274 (490)
.+|...|++++| +++.+|++|+.||.|++|+.... ....+..|...|.+++|+|++.+|++|+.|+.|++|++...
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 93 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG 93 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence 456789999999 99999999999999999998654 45677889999999999999999999999999999998654
Q ss_pred -ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEE
Q 011224 275 -EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIW 352 (490)
Q Consensus 275 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iw 352 (490)
.....+..|..++.++.| +...+++++.|+.|++|+ ....+..+.+|...+.+++|+| ++.++++++.||.|++|
T Consensus 94 ~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 94 EDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 456667788899999999 566889999999999999 6677888899999999999998 89999999999999999
Q ss_pred ecCCCceeeeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC
Q 011224 353 NMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE 431 (490)
Q Consensus 353 d~~~~~~~~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~ 431 (490)
| ....+..+.. |...+.+++|+|++ .+++++.||.|++||+++++.+..+.+|..+|++++|+|++
T Consensus 171 d--~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 237 (313)
T 3odt_A 171 Q--NDKVIKTFSGIHNDVVRHLAVVDDG----------HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG- 237 (313)
T ss_dssp E--TTEEEEEECSSCSSCEEEEEEEETT----------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-
T ss_pred e--cCceEEEEeccCcccEEEEEEcCCC----------eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-
Confidence 9 4556666666 88999999999987 38899999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 432 YLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 432 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.|++++.||.|++||+.+++.+..+..+. .|.+++|+|+|+ +++++.|+.|++|+++
T Consensus 238 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 238 DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence 68999999999999999999988887654 699999999998 6679999999999985
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-40 Score=328.75 Aligned_cols=309 Identities=14% Similarity=0.212 Sum_probs=248.8
Q ss_pred EECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 011224 149 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARI 227 (490)
Q Consensus 149 ~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l~sg~~dg~i~i 227 (490)
.|+|++..+++++ .|+.. +. .+..+ ...|...|++++|+| ++.+|++|+.||.|+|
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~-------------~~~~~---~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~v 90 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GK-------------LIATL---MENEPNSITSSAVSPGETPYLITGSDQGVIKI 90 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CC-------------EEEEE---CTTTTSCEEEEEEECSSSCEEEEEETTSEEEE
T ss_pred hcCCccccccccc------ccccc-ce-------------EEeee---ccCCCCceEEEEECCCCCCEEEEecCCceEEE
Confidence 3788888887765 37633 11 11122 134678999999999 9999999999999999
Q ss_pred EECCC---c--e--eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc---CcceeEeeeee------------cc
Q 011224 228 WSTNG---D--L--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFEFH------------SG 285 (490)
Q Consensus 228 w~~~~---~--~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~---~~~~~~~~~~~------------~~ 285 (490)
|+... . . ...+ .|.++|++++|+|++++|++|+.|++|++||+. ++.....+..+ ..
T Consensus 91 wd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (437)
T 3gre_A 91 WNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169 (437)
T ss_dssp EEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCC
T ss_pred eECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccccc
Confidence 99643 2 1 2222 599999999999999999999999999999995 55554443332 12
Q ss_pred CeEEEEc---cCCceEEEEcCCCeEEEEEcCCCcceeEecC--CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee
Q 011224 286 PTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 360 (490)
Q Consensus 286 ~~~~~~~---~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 360 (490)
.+.++.+ .+...+++++.|+.|++|++....++..+.+ |.+.|++++|+|++++|++|+.||+|++||+++++++
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 2333332 2356788999999999999999999999988 8899999999999999999999999999999999998
Q ss_pred eeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC-----------------------
Q 011224 361 HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG----------------------- 416 (490)
Q Consensus 361 ~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----------------------- 416 (490)
..+. .|...|.+++|+|... + ...+|++|+.||.|++||+++++++..+.+
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s----~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYG----K-NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTC----T-TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEEecCCCCceEEEEeccccC----C-CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 8876 7778999998887532 1 124789999999999999999998887764
Q ss_pred ---CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe------------------------------------
Q 011224 417 ---HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT------------------------------------ 457 (490)
Q Consensus 417 ---h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~------------------------------------ 457 (490)
|...|++++|+ ++++|++|+.|+.|++||+.+++.+..+.
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS 403 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence 44558888998 77999999999999999999988666554
Q ss_pred --cCCCEEEEEECCC--CCEEEEEECCCcEEEEE
Q 011224 458 --GNGGIFEVCWNKE--GDKIAACFANHTVCVLD 487 (490)
Q Consensus 458 --~~~~v~~~~~~~~--g~~la~~~~d~~v~v~~ 487 (490)
+...|++++|+++ +.+|++|+.||.|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3456999999998 77999999999999995
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.2e-40 Score=312.50 Aligned_cols=255 Identities=24% Similarity=0.366 Sum_probs=201.7
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC--CC
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 213 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~ 213 (490)
.++.+|.+.|++++|+|+|++||||+.|++|+|||+.++.. ..+..+ .+|...|.+++|++ ++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----------~~~~~l----~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----------ILIADL----RGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----------EEEEEE----ECCSSCEEEEEECCGGGS
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----------EEEEEE----cCCCccEEEEEeCCCCCC
Confidence 45779999999999999999999999999999999875421 111222 34678899999986 48
Q ss_pred CEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 214 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
++|++|+.|++|+||+.... ....+.+|...|.+++|+|+ +.+|++|+.|++|++||+++.....
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~---------- 141 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE---------- 141 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE----------
T ss_pred CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc----------
Confidence 99999999999999998653 44567899999999999998 7899999999999999987642100
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-----------------CCEEEEEeCCCeEEE
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----------------GSLLASCSDDVTAKI 351 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-----------------~~~l~s~~~dg~i~i 351 (490)
....+.+|...|.+++|+|+ +++|++|+.|++|+|
T Consensus 142 ----------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 193 (316)
T 3bg1_A 142 ----------------------------VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193 (316)
T ss_dssp ----------------------------ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred ----------------------------eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence 01234567777777888776 478999999999999
Q ss_pred EecCCC---ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC---e-EEEEeeCCCCCEEEE
Q 011224 352 WNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---K-LLYSLNGHREPVYSL 424 (490)
Q Consensus 352 wd~~~~---~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~---~-~~~~~~~h~~~v~~l 424 (490)
||+... +.+..+.+|...|.+++|+|++.. ...+|++|+.||+|++|++... . ....+..|...|+++
T Consensus 194 Wd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~-----~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v 268 (316)
T 3bg1_A 194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL-----PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHV 268 (316)
T ss_dssp EEECTTSCEEEEECCBCCSSCEEEEECCCCSSC-----SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEE
T ss_pred EEeCCCCccceeeecccCCCceEEEEecCCCCC-----CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEE
Confidence 999755 466788899999999999998621 0127999999999999998762 1 123456688999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEcC
Q 011224 425 AFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 425 ~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
+|+|++++||+|+.|++|+||+..
T Consensus 269 ~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 269 SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999975
No 66
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-39 Score=306.77 Aligned_cols=251 Identities=27% Similarity=0.501 Sum_probs=197.5
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
+|...|++++|+|++++|++|+.|++|+||++....... .....+.. ..+|...|.+++|+|++++|++|
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~------~~~~~~~~----~~~h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT------FEMDLLAI----IEGHENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------CCCEEEEE----EC----CEEEEEECTTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc------ccceeEEE----EcCCCCcEEEEEECCCCCEEEEE
Confidence 399999999999999999999999999999985421100 00011122 23467889999999999999999
Q ss_pred eCCCeEEEEECC-C----ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 220 SYDGQARIWSTN-G----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 220 ~~dg~i~iw~~~-~----~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
+.|++|+||++. . .....+.+|...|.+++|+|++.+|++|+.|++|++||+.++..
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~------------------ 187 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW------------------ 187 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE------------------
T ss_pred eCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe------------------
Confidence 999999999983 2 23457889999999999999999999999999999999765421
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEEecCCC--------ceeeeec
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQD--------KYVHDLR 364 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~ 364 (490)
.++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+..+ .+...+.
T Consensus 188 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 246 (330)
T 2hes_X 188 ---------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP 246 (330)
T ss_dssp ---------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC
T ss_pred ---------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecc
Confidence 123467789999999999999 678999999999999998754 3344454
Q ss_pred c-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEE-eeCCCC-CEEEEEECC--CCCEEEEEe
Q 011224 365 E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS-LNGHRE-PVYSLAFSP--TGEYLASGS 437 (490)
Q Consensus 365 ~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~-~~~h~~-~v~~l~~sp--dg~~l~s~s 437 (490)
. |...|++++|++.+ +|++|+.||.|++|+..++. .+.. +.+|.. .|++++|+| ++++||+||
T Consensus 247 ~~h~~~v~~v~~s~~~----------~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s 316 (330)
T 2hes_X 247 DVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGG 316 (330)
T ss_dssp SCCSSCEEEEEECTTS----------CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEE
T ss_pred cccccceEEEEEcCCC----------EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEec
Confidence 4 88899999999765 58999999999999998774 3333 367877 899999999 789999999
Q ss_pred CCCcEEEEEcCC
Q 011224 438 LDKSMHIWSLKE 449 (490)
Q Consensus 438 ~dg~i~iw~~~~ 449 (490)
.||+|+||++.+
T Consensus 317 ~Dg~v~~W~~~~ 328 (330)
T 2hes_X 317 DDGIVNFWSLEK 328 (330)
T ss_dssp TTSEEEEEEC--
T ss_pred CCCcEEEEEecc
Confidence 999999999864
No 67
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.3e-38 Score=305.19 Aligned_cols=282 Identities=14% Similarity=0.120 Sum_probs=245.3
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC-E
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-L 215 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~-~ 215 (490)
+..+|.+.|++++|+|++.+|++|+.|+.|++|++.++... ...... ..|...|++++|+|+++ +
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~~~----~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLLQS----LRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEEEE----EECSSCEEEEEEEESSSEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccceee----eecCCceEEEEECCCCCcE
Confidence 45689999999999999999999999999999998765310 011111 13567899999999999 9
Q ss_pred EEEEeCCCeEEEEEC-CCceeEEecC--CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC---------cceeEeeeee
Q 011224 216 LATGSYDGQARIWST-NGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---------EEWKQQFEFH 283 (490)
Q Consensus 216 l~sg~~dg~i~iw~~-~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~---------~~~~~~~~~~ 283 (490)
|++|+.||.|++|+. .......+.+ |...|++++|+| +.+|++++.|+.|++||+++ ++....+. +
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 999999999999999 8777788888 999999999999 99999999999999999987 66666665 7
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCC-Cc--ceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCC--
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-- 357 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~--~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~-- 357 (490)
...+.++.|.++. +++++.++.|++|++.. .. .......|...+.+++|+| ++++|++++.||.|++|++...
T Consensus 150 ~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 150 KNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp CCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred CCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 7888999998776 88999999999999987 43 3344557888999999999 9999999999999999999887
Q ss_pred ----ceeeeeccccc---------cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC-CCCEEE
Q 011224 358 ----KYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYS 423 (490)
Q Consensus 358 ----~~~~~~~~~~~---------~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~ 423 (490)
.....+..|.. .|.+++|+|++. +|++|+.||.|++||+.+++.+..+.+| ..+|++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK---------FLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK 299 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCC---------EEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence 77777777755 999999999886 6899999999999999999999999998 999999
Q ss_pred EEECCCCCEEEEEeCCCc-EEEEE
Q 011224 424 LAFSPTGEYLASGSLDKS-MHIWS 446 (490)
Q Consensus 424 l~~spdg~~l~s~s~dg~-i~iw~ 446 (490)
++ |++++|++|+.||+ .+.|.
T Consensus 300 ~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 300 IA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EE--ECSSEEEEEEECTHHHHCSS
T ss_pred ec--CCCCeEEEEecCCccccccc
Confidence 99 99999999999998 55555
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-38 Score=339.99 Aligned_cols=324 Identities=19% Similarity=0.270 Sum_probs=272.3
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
.+..+.+|..+|++++|+|++++|++|+.||.|++|++.++.. +..+ ..|...|++++|+|++
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-------------~~~~----~~~~~~v~~~~~s~~~ 109 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-------------VVDF----EAHPDYIRSIAVHPTK 109 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-------------EEEE----ECCSSCEEEEEECSSS
T ss_pred eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-------------EEEE----ecCCCCEEEEEEeCCC
Confidence 4567889999999999999999999999999999999976542 1112 2356789999999999
Q ss_pred CEEEEEeCCCeEEEEECCC--ceeEEecCCCCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcceeEeeeeec-cCeEE
Q 011224 214 TLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLD 289 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~ 289 (490)
++|++|+.||.|++|+... .....+.+|..+|.+++|+| ++..|++++.||+|++||+.++.....+..+. ..+..
T Consensus 110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~ 189 (814)
T 3mkq_A 110 PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189 (814)
T ss_dssp SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCE
T ss_pred CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEE
Confidence 9999999999999999764 34567889999999999999 88899999999999999998887777666554 67788
Q ss_pred EEcc---CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc
Q 011224 290 VDWR---NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 366 (490)
Q Consensus 290 ~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 366 (490)
+.|. +...+++++.++.|++|++..+.++..+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..+
T Consensus 190 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 8886 4567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe----------EEE------------------------
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK----------LLY------------------------ 412 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~----------~~~------------------------ 412 (490)
...+.+++|+|++.. .++++++ ++.+.+|++.... .+.
T Consensus 270 ~~~v~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (814)
T 3mkq_A 270 LERSWCIATHPTGRK-------NYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQ 341 (814)
T ss_dssp SSSEEEEEECTTCGG-------GEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCS
T ss_pred CCcEEEEEEccCCCc-------eEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeeccccccccc
Confidence 999999999999752 2355554 6678888875432 222
Q ss_pred ---------EeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcE
Q 011224 413 ---------SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 413 ---------~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v 483 (490)
.+..+...+.+++|+|+|++|++++ |+.+.+|++........ +.+.+++|+|+|++||+++.+++|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~----~~i~~~~~spdg~~la~~~~~g~v 416 (814)
T 3mkq_A 342 DEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAF----GKCQDFVWGPDSNSYALIDETGQI 416 (814)
T ss_dssp SSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEE----EECSEEEECTTSSCEEEECTTCCE
T ss_pred CccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCC----CceEEEEEeCCCCeEEEEeCCCcE
Confidence 1123445678999999999999998 89999999876554332 346789999999999999999999
Q ss_pred EEEE
Q 011224 484 CVLD 487 (490)
Q Consensus 484 ~v~~ 487 (490)
.+|+
T Consensus 417 ~l~~ 420 (814)
T 3mkq_A 417 KYYK 420 (814)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-40 Score=321.76 Aligned_cols=279 Identities=19% Similarity=0.358 Sum_probs=245.5
Q ss_pred CeEEEEEcCCCC-EEEEE----------eCCCeEEEEECCCce---eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEE
Q 011224 203 DVTTLDWNGEGT-LLATG----------SYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 268 (490)
Q Consensus 203 ~V~~~~~s~~~~-~l~sg----------~~dg~i~iw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~i 268 (490)
.|.+++|+|+++ +|++| +.|+.|+||+..... ......|...|++++|+|++.+|++|+.|+.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 478899999987 99999 889999999987542 2223468999999999999999999999999999
Q ss_pred EEccC----cceeEeeeeeccCeEEEEccC--CceEEEEcCCCeEEEEEcCCCc------cee---EecCCCCCeeEEEE
Q 011224 269 WDVKT----EEWKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR------PIK---TFAGHQGEVNCVKW 333 (490)
Q Consensus 269 wd~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~------~~~---~~~~h~~~v~~v~~ 333 (490)
||+.+ ......+..|...+.++.|.+ ...+++++.|+.|++|++.... ... .+.+|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 447777888999999999975 5688999999999999998775 322 34678999999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEecCCCceeeeeccc------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCC---cEEEE
Q 011224 334 DPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREH------SKEIYTIRWSPTGSGTNNPNQQLILASASFDS---TVKLW 403 (490)
Q Consensus 334 ~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg---~i~iw 403 (490)
+|+ +.+|++++.||.|++||+++++.+..+..+ ...+.+++|+|++. .+|++++.|+ .|++|
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--------TRVATATGSDNDPSILIW 245 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--------TEEEEEECCSSSCCCCEE
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--------CEEEEEECCCCCceEEEE
Confidence 999 789999999999999999999988888776 78899999999874 2789999999 99999
Q ss_pred eCCCC-eEEEEee-CCCCCEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCC-CEEEEEE
Q 011224 404 DVELG-KLLYSLN-GHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEG-DKIAACF 478 (490)
Q Consensus 404 d~~~~-~~~~~~~-~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g-~~la~~~ 478 (490)
|++++ ..+..+. +|...|++++|+| ++.+|++++.||.|++||+.+++.+..+..+ ..|.+++|+|++ .+|++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 99986 6677787 8999999999999 9999999999999999999999999888764 459999999999 8999999
Q ss_pred CCCcEEEEEee
Q 011224 479 ANHTVCVLDFR 489 (490)
Q Consensus 479 ~d~~v~v~~~~ 489 (490)
.|+.|+||+++
T Consensus 326 ~d~~i~iw~~~ 336 (416)
T 2pm9_A 326 FDNKIEVQTLQ 336 (416)
T ss_dssp SSSEEEEEESC
T ss_pred cCCcEEEEEcc
Confidence 99999999985
No 70
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-38 Score=305.32 Aligned_cols=303 Identities=19% Similarity=0.301 Sum_probs=223.4
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC--CC
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 213 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--~~ 213 (490)
..+.+|...|++++|+|++++|++|+.||.|++|++.++... ...... ...|...|++++|+| ++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~----~~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------WELSDS----WRAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------EEEEEE----EECCSSCEEEEEECCGGGC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------ceecce----eccCCCcEEEEEEcCCCCC
Confidence 567899999999999999999999999999999998764311 111122 234678899999999 69
Q ss_pred CEEEEEeCCCeEEEEECCC----------ceeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 214 TLLATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~----------~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
.+|++|+.||.|++|+... .....+..|..+|++++|+|+ +.+|++++.|++|++||++++.....+.
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 9999999999999999865 335678899999999999999 9999999999999999998877554433
Q ss_pred -------------eeccCeEEEEccC----CceEEEEcCCCeEEEEEcCCCcc--eeEecCCCCCeeEEEEcCCC----C
Q 011224 282 -------------FHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTG----S 338 (490)
Q Consensus 282 -------------~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~----~ 338 (490)
.+...+.++.|.+ ...+++++.++.+.+|....... +..+.+|...|.+++|+|++ +
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 3455677787764 56788899999998887776654 67788999999999999998 8
Q ss_pred EEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC
Q 011224 339 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 418 (490)
Q Consensus 339 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~ 418 (490)
+|++|+.||.|++||++.+........+........+++...... .....+.....+.+|+....+.+..+.+|.
T Consensus 232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDA-----QGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEETTSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTS
T ss_pred EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccc-----ccccccccceeeeecccccccEEEEEeccc
Confidence 999999999999999987654433322222222222222221000 012233445567777777778889999999
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 419 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
..|++++|+|++++|++|+.||.|+||++.+++.+..+
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999999999999987655443
No 71
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=305.40 Aligned_cols=281 Identities=14% Similarity=0.245 Sum_probs=237.0
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeC---CCeEEEEECCCcee--EEecCCCCCEEEEEecCC---CCEEEEEeCCCeEEEE
Q 011224 199 EKSKDVTTLDWNGEGTLL-ATGSY---DGQARIWSTNGDLK--CTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVW 269 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l-~sg~~---dg~i~iw~~~~~~~--~~~~~h~~~V~~l~~~~~---~~~l~s~s~D~~v~iw 269 (490)
+|...|.+++|+|++..+ ++|+. |+.|+||+...... ....+|..+|++++|+|+ +.+|++|+.|+.|++|
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 467889999999999655 55665 99999999876433 233479999999999998 6999999999999999
Q ss_pred EccCcc-eeEeeeeeccCeEEEEcc-------CCceEEEEcCCCeEEEEEcCCCc-ceeEecCCCC----CeeEEE----
Q 011224 270 DVKTEE-WKQQFEFHSGPTLDVDWR-------NNVSFATSSTDNMIYVCKIGENR-PIKTFAGHQG----EVNCVK---- 332 (490)
Q Consensus 270 d~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~h~~----~v~~v~---- 332 (490)
|+.++. ....+..|...+.++.|. +...+++++.|+.|++|++.... ++..+..|.+ .+.+++
T Consensus 96 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA 175 (357)
T ss_dssp CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence 999888 788888999999998653 35578899999999999999876 7778876655 788888
Q ss_pred EcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcC---CCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe
Q 011224 333 WDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---TGSGTNNPNQQLILASASFDSTVKLWDVELGK 409 (490)
Q Consensus 333 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p---~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 409 (490)
|+|++++|++++.||.|++||+++++.... ..|...+.+++|+| ++. +|++|+.||.|++||+++++
T Consensus 176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 176 YNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMN---------KLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp CC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCC---------EEEEEESTTEEEEEEEEEEE
T ss_pred cCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCC---------EEEEECCCCeEEEEeCcCCC
Confidence 789999999999999999999998887543 56788999999999 664 78999999999999998765
Q ss_pred EEEEe-----eCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEEcCCC-------------------eEEEEEecC-CCEE
Q 011224 410 LLYSL-----NGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEG-------------------KIVKTYTGN-GGIF 463 (490)
Q Consensus 410 ~~~~~-----~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iw~~~~~-------------------~~~~~~~~~-~~v~ 463 (490)
.+..+ .+|...|++++|+|+++ +|++|+.||.|++|++.++ +.+..+.++ ..|.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 54333 48999999999999998 8999999999999999754 345556554 4699
Q ss_pred EEEECCCCCEEE-EEECCCcEEEEEee
Q 011224 464 EVCWNKEGDKIA-ACFANHTVCVLDFR 489 (490)
Q Consensus 464 ~~~~~~~g~~la-~~~~d~~v~v~~~~ 489 (490)
+++|+|+|++|+ +++.|+.|+|||+.
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999998 79999999999986
No 72
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.1e-39 Score=311.79 Aligned_cols=288 Identities=14% Similarity=0.130 Sum_probs=220.9
Q ss_pred cceeEEEECCCCCEEEEEECCC-------cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE
Q 011224 143 SEVCACAWSPAGSLLASGSGDS-------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~-------~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
.+|+|++|+||+++|++||.|. .|++|++......... ....... .....+...|.+++++ +..
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-----~~~~~~~--~~l~~~~~~v~s~~~~--~~~ 85 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-----QFHILSE--FALEDNDDSPTAIDAS--KGI 85 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-----HEEEEEE--EECCTTSCCCCEEEEE--TTE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-----eeeeeeE--EEccCCCCceEEEEeC--CCE
Confidence 4799999999999999998654 5999998754321100 0011111 1123445667777765 456
Q ss_pred EEEE-----------eCCCeEEEEECCCc--eeE---E-----ecCCCCCEEEEEecCCCCEEEE--EeCCCeEEEEEcc
Q 011224 216 LATG-----------SYDGQARIWSTNGD--LKC---T-----LSKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVK 272 (490)
Q Consensus 216 l~sg-----------~~dg~i~iw~~~~~--~~~---~-----~~~h~~~V~~l~~~~~~~~l~s--~s~D~~v~iwd~~ 272 (490)
+++| +.|+.+++|+.... ... . ...+...+.+++|+|+|+++++ ++.|++|+|||+.
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~ 165 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS 165 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC
Confidence 6655 45778999986432 111 1 1234456899999999999765 4478999999999
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCccee--EecCCCCCeeEEEEcCCCCEEEEEeCCC---
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDDV--- 347 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~dg--- 347 (490)
+++.+..+. |...+.++.|.++..++.++.++.+.+|+...+..+. ...+|...|.+++|+|+++++++++.|+
T Consensus 166 ~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 166 DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred CCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 998887775 6678999999876655554456667777766665543 3457888999999999999999999887
Q ss_pred -eEEEEecCCCce----eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCCE
Q 011224 348 -TAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPV 421 (490)
Q Consensus 348 -~i~iwd~~~~~~----~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v 421 (490)
.+++|++..... ...+..|...|++++|+|+|. +||+|+.|++|+|||+++++++..+ .+|..+|
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~---------~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE---------LAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI 315 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC---------EEEEEETTSCEEEEETTTTEEEEEETTSSSSCE
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCC---------ceEEEcCCCEEEEEECCCCcEEEEecCcccCCE
Confidence 688899876543 345677889999999999997 8999999999999999999999885 7899999
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 422 YSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
++|+|||||++|||||.|++|+||++..
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999999864
No 73
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.3e-37 Score=304.54 Aligned_cols=275 Identities=23% Similarity=0.466 Sum_probs=239.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeE--EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~--~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
.+..|+||++ ++|++|. |++|+|||.... ... .+.+|...|++|+|+|+|++|++|+.|++|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999976 5777664 999999998754 333 3457888999999999999999999999999999999999999
Q ss_pred eeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCc
Q 011224 280 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 358 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~ 358 (490)
+..|...+.++.+. ...+++++.|+.+++|+.... ..+..+.+|...+.++.|+|+++++++++.|+.+++|+..+++
T Consensus 185 ~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 185 MTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp ECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred EeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 99999999998885 457889999999999998764 4567789999999999999999999999999999999998764
Q ss_pred e----eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEE--EECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCE
Q 011224 359 Y----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432 (490)
Q Consensus 359 ~----~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~ 432 (490)
. +.....|...|.+++|+|.+.. ++++ |+.|++|++||+.+++++..+..| ..|.++.|+|++..
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~--------~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSN--------VLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTT--------EEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred ccceeeeeecccCCceeeeeeCCCccc--------EEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 3 4556778899999999998752 4544 457999999999999999988865 56899999999999
Q ss_pred EEEEe--CCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 433 LASGS--LDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 433 l~s~s--~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|++++ .|+.|+|||+.+++++.++.+|. .|++++|+|+|++||+|+.|++|+|||+.
T Consensus 335 lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 394 (420)
T ss_dssp EEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 88765 79999999999999999998764 59999999999999999999999999974
No 74
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-39 Score=319.18 Aligned_cols=290 Identities=18% Similarity=0.227 Sum_probs=237.0
Q ss_pred CCceeec-cccccceeEEEECC-CCCEEEEEECCCcEEEEecCC---CCCCCCCCCCCceeEEEEeeecccccCCCCeEE
Q 011224 132 NSDVTIL-EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIAD---GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 206 (490)
Q Consensus 132 ~~~~~~l-~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~~Wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 206 (490)
...+..+ .+|.+.|++++|+| ++.+|+||+.||+|++||+.+ +.... . . ....|...|++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-----~--~--------~~~~h~~~v~~ 116 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS-----S--S--------LTYDCSSTVTQ 116 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS-----C--S--------EEEECSSCEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc-----e--e--------eeccCCCCEEE
Confidence 3445667 89999999999999 999999999999999999865 22100 0 0 01135678999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECC----CceeEEec----------C--CCCCEEEEE--ecCCCCEEEEEeCCCeEEE
Q 011224 207 LDWNGEGTLLATGSYDGQARIWSTN----GDLKCTLS----------K--HKGPIFSLK--WNKKGDYLLTGSCDKTAIV 268 (490)
Q Consensus 207 ~~~s~~~~~l~sg~~dg~i~iw~~~----~~~~~~~~----------~--h~~~V~~l~--~~~~~~~l~s~s~D~~v~i 268 (490)
++|+|++.+|++|+.||.|++|++. +.....+. . +...+.++. +++++.+|++|+.|++|++
T Consensus 117 ~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 196 (437)
T 3gre_A 117 ITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVII 196 (437)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEE
T ss_pred EEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999999973 32222222 1 556677776 5678999999999999999
Q ss_pred EEccCcceeEeeee--eccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcC----CCCEE
Q 011224 269 WDVKTEEWKQQFEF--HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP----TGSLL 340 (490)
Q Consensus 269 wd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~----~~~~l 340 (490)
||+++++.+..+.. |...+.++.|.+ ...+++++.|+.|++|++....++..+. +|...|.+++|+| ++.+|
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l 276 (437)
T 3gre_A 197 FDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276 (437)
T ss_dssp EETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEE
T ss_pred EeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEE
Confidence 99999999998887 788999999965 4567889999999999999999888886 7888999996654 67899
Q ss_pred EEEeCCCeEEEEecCCCceeeeecccc--------------------------ccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 341 ASCSDDVTAKIWNMKQDKYVHDLREHS--------------------------KEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 341 ~s~~~dg~i~iwd~~~~~~~~~~~~~~--------------------------~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
++|+.||.|++||+.+++++..+..|. ..|.+++|+ ++ .+|++|
T Consensus 277 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~---------~~l~s~ 346 (437)
T 3gre_A 277 VGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND---------KILLTD 346 (437)
T ss_dssp EEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT---------EEEEEE
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc---------eEEEec
Confidence 999999999999999998877776544 345556665 33 379999
Q ss_pred ECCCcEEEEeCCCCeEEEEeeC-------------------------------------CCCCEEEEEECCC--CCEEEE
Q 011224 395 SFDSTVKLWDVELGKLLYSLNG-------------------------------------HREPVYSLAFSPT--GEYLAS 435 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~v~~l~~spd--g~~l~s 435 (490)
+.||.|++||+.+++.+..+.+ |...|++|+|+++ +.+|++
T Consensus 347 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s 426 (437)
T 3gre_A 347 EATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426 (437)
T ss_dssp GGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred CCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence 9999999999998877666655 8899999999998 789999
Q ss_pred EeCCCcEEEEE
Q 011224 436 GSLDKSMHIWS 446 (490)
Q Consensus 436 ~s~dg~i~iw~ 446 (490)
|+.||.|+||+
T Consensus 427 ~~~dG~I~iw~ 437 (437)
T 3gre_A 427 CDNSGLIGIFQ 437 (437)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCceEEEeC
Confidence 99999999995
No 75
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=303.66 Aligned_cols=293 Identities=18% Similarity=0.299 Sum_probs=241.7
Q ss_pred cCCCceeeccccccceeEEEECCC---CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEE
Q 011224 130 IPNSDVTILEGHTSEVCACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 206 (490)
Q Consensus 130 ~~~~~~~~l~~H~~~V~~~~~sp~---~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 206 (490)
.|...+..+.+|...|++++|+|+ |.+|++|+.||.|++|++.+... ..... ...|...|++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~----~~~h~~~v~~ 91 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-----------TIPKA----QQMHTGPVLD 91 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-----------EEEEE----EEECSSCEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-----------eeEEE----eccccCCEEE
Confidence 455667789999999999999999 69999999999999999875211 01111 2235778999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEe--cCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 207 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW--NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 207 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~--~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
++|+|++++|++|+.||.|++|+........+..|..+|++++| +|++.+|++++.|++|++||+++++....+..+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 99999999999999999999999988777778889999999999 8999999999999999999999998888777654
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe--cCCCCCeeEEEEcCCCCE----EEEEeCCCeEEEEecCCC-
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSL----LASCSDDVTAKIWNMKQD- 357 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~----l~s~~~dg~i~iwd~~~~- 357 (490)
.+.++.+... .+++++.++.+.+|++......... ..+...+.++++.++... +++|+.||.|++|+++..
T Consensus 172 -~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 172 -RCYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp -CEEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred -CceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 4556666544 5667777889999999775433222 233456677777666654 999999999999999887
Q ss_pred --ceeeeeccccc------------cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEE
Q 011224 358 --KYVHDLREHSK------------EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 423 (490)
Q Consensus 358 --~~~~~~~~~~~------------~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 423 (490)
..+..+..|.. .|.+++|+|++. +|++|+.||.|++||+.+++++..+.+|..+|++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 320 (368)
T 3mmy_A 250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG---------TLATVGSDGRFSFWDKDARTKLKTSEQLDQPISA 320 (368)
T ss_dssp HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC---------CEEEEETTSCEEEEETTTTEEEEECCCCSSCEEE
T ss_pred ccccceeeeeeecccccccccccccceEEEEEecCCC---------EEEEEccCCeEEEEECCCCcEEEEecCCCCCceE
Confidence 45666666665 799999999986 7899999999999999999999999999999999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 424 LAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 424 l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
++|+|+|++|++|+.|+..+.|++.
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEECCCCCeEEEEeccccccccccc
Confidence 9999999999999998866655543
No 76
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.5e-38 Score=305.92 Aligned_cols=249 Identities=26% Similarity=0.420 Sum_probs=208.4
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
|...|++++|+|+|++|++|+.|++|++||+.++.. ... ..+|...|.+++|+|++.+|++|+
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~-------------~~~----~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-------------VMI----LQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------EEE----ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------EEE----EccCCCCEEEEEEcCCCCEEEEec
Confidence 334599999999999999999999999999876531 112 234577899999999999999999
Q ss_pred CCCeEEEEECCCceeEEecCCCCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEE
Q 011224 221 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (490)
.|++|++||+..........+...|.+++|+| ++.+|++|+.|++|++||++++.....+..
T Consensus 185 ~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~----------------- 247 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS----------------- 247 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------------
T ss_pred CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-----------------
Confidence 99999999987654433334677899999999 889999999999999999988765443321
Q ss_pred EEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC------------ceeeeecccc
Q 011224 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------------KYVHDLREHS 367 (490)
Q Consensus 300 ~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~ 367 (490)
......+|...|.+++|+|++++|++|+.|++|++||+.+. .+...+.+|.
T Consensus 248 -----------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~ 310 (393)
T 1erj_A 248 -----------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 310 (393)
T ss_dssp ----------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS
T ss_pred -----------------cccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc
Confidence 01123578999999999999999999999999999998753 3455677899
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC------CCCEEEEEeCCCc
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP------TGEYLASGSLDKS 441 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp------dg~~l~s~s~dg~ 441 (490)
..|.+++|+|++. +|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++||+||.||+
T Consensus 311 ~~v~~~~~~~~~~---------~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 311 DFVLSVATTQNDE---------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp SCEEEEEECGGGC---------EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred CcEEEEEECCCCC---------EEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 9999999999886 899999999999999999999999999999999999986 6889999999999
Q ss_pred EEEEEcCC
Q 011224 442 MHIWSLKE 449 (490)
Q Consensus 442 i~iw~~~~ 449 (490)
|+||++.+
T Consensus 382 i~iW~~~~ 389 (393)
T 1erj_A 382 ARIWKYKK 389 (393)
T ss_dssp EEEEEEEE
T ss_pred EEECcccc
Confidence 99999864
No 77
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-38 Score=308.61 Aligned_cols=278 Identities=21% Similarity=0.363 Sum_probs=246.5
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEC----CCce-------eEEecC----------CCCCEEEEEecCCCCEE
Q 011224 200 KSKDVTTLDWNGEGT-LLATGSYDGQARIWST----NGDL-------KCTLSK----------HKGPIFSLKWNKKGDYL 257 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~----~~~~-------~~~~~~----------h~~~V~~l~~~~~~~~l 257 (490)
|...|++++|+|+++ +|++|+.||.|++|+. .... ...+.. |.+.|++++|+|++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 356899999999999 9999999999999998 5433 333333 68899999999999999
Q ss_pred EEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCC---------
Q 011224 258 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE--------- 327 (490)
Q Consensus 258 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~--------- 327 (490)
++|+.|+.|++|| .++.....+..|..++.++.|.+ ...+++++.|+.|++|++.....+..+..+...
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 9999999999999 66777888888999999999965 456888999999999999999988888888776
Q ss_pred ------eeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEE
Q 011224 328 ------VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 401 (490)
Q Consensus 328 ------v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 401 (490)
+.+++|+|++ .+++++.||.|++||+.+++.+..+..|...+.+++|+|++. +|++++.||.|+
T Consensus 203 ~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~d~~i~ 272 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK---------LLLSASDDGTLR 272 (425)
T ss_dssp ---CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEE
T ss_pred cCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC---------EEEEEcCCCEEE
Confidence 9999999975 588999999999999999999988999999999999999886 789999999999
Q ss_pred EEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCCEEEEEECC
Q 011224 402 LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 402 iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d 480 (490)
+||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++|++.+++.+..+.. ...+.+++|+|+|++|++++.|
T Consensus 273 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 273 IWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp EECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence 99999999999999999999999999999 999999999999999999999888876 4579999999999999999999
Q ss_pred CcEEEEEee
Q 011224 481 HTVCVLDFR 489 (490)
Q Consensus 481 ~~v~v~~~~ 489 (490)
+.|.|||++
T Consensus 352 g~i~i~~~~ 360 (425)
T 1r5m_A 352 GQVNVYDLK 360 (425)
T ss_dssp SCEEEEECH
T ss_pred CeEEEEECC
Confidence 999999985
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.4e-39 Score=303.91 Aligned_cols=253 Identities=25% Similarity=0.419 Sum_probs=205.5
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecC--CCCEEEEEeCCCeEEEEEcc
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~ 272 (490)
.+|...|++++|+|+|++|++|+.|++|+||++... ....+.+|.++|++++|+| ++++|++|+.|++|++||++
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 356789999999999999999999999999998643 3457889999999999976 48899999999999999987
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEE
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAK 350 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~ 350 (490)
++.+. .+..+.+|...|++++|+|+ +.+|++|+.|++|+
T Consensus 90 ~~~~~---------------------------------------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~ 130 (316)
T 3bg1_A 90 NGTWE---------------------------------------KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130 (316)
T ss_dssp SSCCC---------------------------------------EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEE
T ss_pred CCcce---------------------------------------EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEE
Confidence 65321 22346789999999999998 78999999999999
Q ss_pred EEecCCCce---eeeeccccccEEEEEEcCCCCCC--------CCCCCcEEEEEEECCCcEEEEeCCCC---eEEEEeeC
Q 011224 351 IWNMKQDKY---VHDLREHSKEIYTIRWSPTGSGT--------NNPNQQLILASASFDSTVKLWDVELG---KLLYSLNG 416 (490)
Q Consensus 351 iwd~~~~~~---~~~~~~~~~~i~~v~~~p~g~~~--------~~~~~~~~l~sgs~dg~i~iwd~~~~---~~~~~~~~ 416 (490)
+||++.... ...+..|...+.+++|+|+.... ..+....+|++|+.|++|++||++.. +++..+.+
T Consensus 131 lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~ 210 (316)
T 3bg1_A 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210 (316)
T ss_dssp EEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC
T ss_pred EEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc
Confidence 999987632 34566788899999999974210 00111236899999999999999755 46778899
Q ss_pred CCCCEEEEEECCCC----CEEEEEeCCCcEEEEEcCCC---e-EEEEE-ecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 417 HREPVYSLAFSPTG----EYLASGSLDKSMHIWSLKEG---K-IVKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 417 h~~~v~~l~~spdg----~~l~s~s~dg~i~iw~~~~~---~-~~~~~-~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
|..+|++++|+|++ .+||+|+.|++|+||++.+. . ....+ .....|++++|+|+|++||+|+.|++|+||+
T Consensus 211 h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 99999999999987 89999999999999998762 1 11222 2345799999999999999999999999999
Q ss_pred ee
Q 011224 488 FR 489 (490)
Q Consensus 488 ~~ 489 (490)
..
T Consensus 291 ~~ 292 (316)
T 3bg1_A 291 ES 292 (316)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 79
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-37 Score=308.38 Aligned_cols=293 Identities=22% Similarity=0.402 Sum_probs=238.3
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
...+|...|.|++| ++.+|++|+.||.|++||+.++.. ...+ .+|...|.+++| ++++|
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~-------------~~~~----~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC-------------KRIL----TGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE-------------EEEE----CCCSSCEEEEEC--CSSEE
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE-------------EEEE----cCCCCcEEEEEE--CCCEE
Confidence 34567888999887 799999999999999999876532 1122 245778999999 78899
Q ss_pred EEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee---EeeeeeccCeEEEEc
Q 011224 217 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVDW 292 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~ 292 (490)
++|+.||.|++|+.. +.....+.+|...|.+++|++ .+|++|+.|++|++||+.++... ..+..|...+.++.+
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 999999999999976 456678889999999999974 59999999999999999887655 566778889999998
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
+...+++++.|+.|++|++.+...+..+.+|...|.+++|+ +.++++|+.||.|++||+++++++..+..|...|.+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 341 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 341 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEE
Confidence 56678899999999999999999999999999999999994 789999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe---------EEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
++| ++. +|++|+.||.|++||+.++. ++..+.+|..+|++++| ++.+|++|+.||+|+
T Consensus 342 ~~~--~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 342 IRF--DNK---------RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp EEC--CSS---------EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred EEe--cCC---------EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 998 332 79999999999999987665 88899999999999999 788999999999999
Q ss_pred EEEcCCCeEEEEEecCCCEEEEEEC
Q 011224 444 IWSLKEGKIVKTYTGNGGIFEVCWN 468 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~~~v~~~~~~ 468 (490)
+|++.+...............+.|.
T Consensus 409 iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 409 IWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp EEC----------------------
T ss_pred EEECCCCCCcccCCCCCCccceeee
Confidence 9999887655444433344455443
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.7e-36 Score=299.52 Aligned_cols=297 Identities=25% Similarity=0.464 Sum_probs=239.0
Q ss_pred cCCCceeeccccc----cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE
Q 011224 130 IPNSDVTILEGHT----SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 205 (490)
Q Consensus 130 ~~~~~~~~l~~H~----~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 205 (490)
+|..+..+|.+-. --++.|+||++ ++||+| .|++|+|||+.++... ..+. ...|...|+
T Consensus 89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~-------------~~~~--~~~~~~~V~ 151 (420)
T 4gga_A 89 IPSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYIS 151 (420)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEE
T ss_pred cCCCCceEEECCCCcccccceeEEECCC-CEEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCcEE
Confidence 4444455554422 23678999976 466666 5999999999876421 1111 124567899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc-eeEeeeee
Q 011224 206 TLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFH 283 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~ 283 (490)
+++|+|+|++|++|+.||.|+||+... .....+.+|...|.++.|+ +..|++|+.|+.+++||..... .+..+..|
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h 229 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGH 229 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccc
Confidence 999999999999999999999999864 5567889999999998875 5799999999999999987644 55677888
Q ss_pred ccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCc----ceeEecCCCCCeeEEEEcCCCC-EEEE--EeCCCeEEEEecC
Q 011224 284 SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMK 355 (490)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~-~l~s--~~~dg~i~iwd~~ 355 (490)
...+..+.+.. ...+++++.|+.+++|+..... .+..+..|.+.|.+++|+|.+. ++++ |+.|++|+|||+.
T Consensus 230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 88888888864 5678889999999999987654 4566788999999999999765 4554 4579999999999
Q ss_pred CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
++.++..+..+ ..+.++.|+|++. .+++++|+.||.|+|||+.+++++.++.+|...|++|+|+|+|++|||
T Consensus 310 t~~~~~~~~~~-~~v~~~~~~~~~~-------~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S 381 (420)
T 4gga_A 310 SGACLSAVDAH-SQVCSILWSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381 (420)
T ss_dssp TTEEEEEEECS-SCEEEEEEETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred ccccceeeccc-cceeeeeecCCCC-------eEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 99988877654 5788999999875 122233447999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCeEE
Q 011224 436 GSLDKSMHIWSLKEGKIV 453 (490)
Q Consensus 436 ~s~dg~i~iw~~~~~~~~ 453 (490)
||.|++|+||++.+....
T Consensus 382 ~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 382 AAADETLRLWRCFELDPA 399 (420)
T ss_dssp EETTTEEEEECCSCSSCC
T ss_pred EecCCeEEEEECCCCCcc
Confidence 999999999999765443
No 81
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=286.50 Aligned_cols=276 Identities=22% Similarity=0.457 Sum_probs=235.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEE--ecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCT--LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~--~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
..+|+||+++ +|++| .|++|+|||... ..... +.+|...|++++|+|++++|++|+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5679999986 66665 599999999865 44443 4578889999999999999999999999999999999999999
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
..|...+..+.+.. ..+++++.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.||+|++||+.+++.
T Consensus 106 ~~h~~~~~~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 106 TSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp ECCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred cCccceEEEeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence 99988888776654 46788999999999988765 45677889999999999999999999999999999999987653
Q ss_pred ----eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 360 ----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 360 ----~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
......+...+.++.++|.+.. ...+++++.+++|++||........... +...+..+.|+|++..+++
T Consensus 185 ~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 185 GWVPLQTFTQHQGAVKAVAWCPWQSN------VLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BSCCSEEECCCCSCEEEEEECTTSTT------EEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred cccceeeecccCCceEEEEecCCCCc------EEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 3344567788999999987642 2345677889999999999888776655 6678999999999998877
Q ss_pred Ee--CCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 436 GS--LDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 436 ~s--~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++ .|+.|+|||+.+++++.++.+| ..|++++|+|+|++||+|+.|++|+|||+.
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 65 7999999999999999999875 469999999999999999999999999985
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.3e-37 Score=305.30 Aligned_cols=269 Identities=28% Similarity=0.439 Sum_probs=241.9
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
+.++.+ ++.+|++|+.||.|++|+... .....+.+|.++|++++|+|++ +|++|+.||+|++||+.+++....+..
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~ 201 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG 201 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence 566666 567999999999999999764 5667888999999999999988 999999999999999999999999999
Q ss_pred eccCeEEEEcc---CCceEEEEcCCCeEEEEEcCCCcc-----------------------eeEecCCCCCeeEEEEcCC
Q 011224 283 HSGPTLDVDWR---NNVSFATSSTDNMIYVCKIGENRP-----------------------IKTFAGHQGEVNCVKWDPT 336 (490)
Q Consensus 283 ~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~-----------------------~~~~~~h~~~v~~v~~~~~ 336 (490)
|..++.++.+. +...+++++.|+.|++|++..... +..+.+|...+.++ +++
T Consensus 202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~ 279 (464)
T 3v7d_B 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH 279 (464)
T ss_dssp CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE
T ss_pred CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC
Confidence 99999998875 446789999999999999987542 45677898888887 577
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC
Q 011224 337 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 416 (490)
Q Consensus 337 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 416 (490)
++++++|+.||.|++||+.+++.+..+..|...|.+++|+|++. +|++|+.||.|++||+++++++..+.+
T Consensus 280 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~sg~~dg~i~vwd~~~~~~~~~~~~ 350 (464)
T 3v7d_B 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK---------RCISASMDTTIRIWDLENGELMYTLQG 350 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT---------EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCC---------EEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence 89999999999999999999999999999999999999999886 799999999999999999999999999
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 417 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 417 h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|...|.+++|+ +.+|++|+.||.|++||+.++.....+.....+..++|+|++++|++|+ |+.|.|||++
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence 99999999997 5799999999999999999988777776666788899999999999998 8999999975
No 83
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.2e-38 Score=310.73 Aligned_cols=284 Identities=13% Similarity=0.125 Sum_probs=239.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCcee-EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
.+++++|+|++++|++|+.|+.|++|+...... ..+..| ..+....|+|++++|++|+.|+.|++||+.++.....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 356789999999999999999999999875432 233344 444555789999999999999999999999998888888
Q ss_pred eeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee
Q 011224 282 FHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 360 (490)
Q Consensus 282 ~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 360 (490)
.|...+.++.|.+ ...+++++.|+.|++|++.....+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 8999999999975 457889999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeecc---ccccEEEEEEcCCCCC-------------CCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-CCCCCEEE
Q 011224 361 HDLRE---HSKEIYTIRWSPTGSG-------------TNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYS 423 (490)
Q Consensus 361 ~~~~~---~~~~i~~v~~~p~g~~-------------~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~ 423 (490)
..+.. +...+.+++|.|.+.. ..+|+. .+|++|+.||.|++||+++++.+..+. +|...|++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 295 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS 295 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence 88764 5667888888654321 122333 378999999999999999998877764 58889999
Q ss_pred EEECCCCC-EEEEEeCCCcEEEEEcCCCeE-EEEEec--CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 424 LAFSPTGE-YLASGSLDKSMHIWSLKEGKI-VKTYTG--NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 424 l~~spdg~-~l~s~s~dg~i~iw~~~~~~~-~~~~~~--~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++|+|+++ +|++|+.||.|++||+.+++. +..+.. ...+..+.| +++++|++++.|++|++|+++
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence 99999998 999999999999999998753 555554 345777755 678899999999999999975
No 84
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-37 Score=296.92 Aligned_cols=252 Identities=26% Similarity=0.420 Sum_probs=211.9
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC--
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 212 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~-- 212 (490)
+.++.+|...|++++|+|++++|++|+.||.|++|++.... ...... ...|...|++++|+++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~----~~~h~~~v~~~~~~~~~~ 68 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDT----LTGHEGPVWRVDWAHPKF 68 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEE----ECCCSSCEEEEEECCGGG
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeE----ecCCCCcEEEEEeCCCCC
Confidence 46789999999999999999999999999999999986321 111122 2346788999999987
Q ss_pred CCEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 213 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
+.+|++|+.||.|++|+.... ....+..|...|++++|+|+ +.+|++++.|++|++||+++....
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------- 138 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------- 138 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC----------
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce----------
Confidence 999999999999999998764 55677889999999999999 999999999999999999765321
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-------------CCCEEEEEeCCCeEEEEec
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNM 354 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-------------~~~~l~s~~~dg~i~iwd~ 354 (490)
....+.+|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus 139 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 139 -----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp -----------------------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred -----------------------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 1123457888899999999 6999999999999999999
Q ss_pred CCCc----eeeeeccccccEEEEEEcCC---CCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-----EEEEeeCCCCCEE
Q 011224 355 KQDK----YVHDLREHSKEIYTIRWSPT---GSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVY 422 (490)
Q Consensus 355 ~~~~----~~~~~~~~~~~i~~v~~~p~---g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-----~~~~~~~h~~~v~ 422 (490)
+++. .+..+..|...|.+++|+|+ +. +|++++.||.|++||++.+. .+.....|...|+
T Consensus 190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~---------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 260 (379)
T 3jrp_A 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS---------YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 260 (379)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE---------EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred cCCCcceeeEEEEecccCcEeEEEECCCCCCCC---------eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEE
Confidence 8764 44667789999999999998 53 89999999999999998763 2222344888999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 423 SLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 423 ~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
+++|+|+|++|++++.||.|++|++..
T Consensus 261 ~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 261 RASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999999999999999999874
No 85
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=302.20 Aligned_cols=268 Identities=29% Similarity=0.541 Sum_probs=240.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeE
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 278 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~ 278 (490)
+...|++++| ++++|++|+.||.|++|+... .....+.+|.++|++++| ++++|++|+.||+|++||+.+++...
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~ 207 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN 207 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 4567888877 789999999999999999764 566788899999999999 67899999999999999999999999
Q ss_pred eeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcce---eEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 279 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
.+..|...+.++.|.+ ..+++++.|+.|++|++.....+ ..+.+|...|.+++| ++++|++|+.||.|++||+.
T Consensus 208 ~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 208 TLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp EECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred EEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence 9999999999999964 48899999999999999887665 677899999999999 78899999999999999999
Q ss_pred CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
+++.+..+..|...+.++.|++. ++++|+.||.|++||+++++++..+.+|...|++++| ++.+|++
T Consensus 285 ~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 285 TCEFVRTLNGHKRGIACLQYRDR-----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp TCCEEEEEECCSSCEEEEEEETT-----------EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred cCcEEEEEcCCCCcEEEEEeCCC-----------EEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE
Confidence 99999999999999999998532 7999999999999999999999999999999999999 7889999
Q ss_pred EeCCCcEEEEEcCCCe---------EEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 436 GSLDKSMHIWSLKEGK---------IVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 436 ~s~dg~i~iw~~~~~~---------~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|+.||.|++||+.++. .+..+.++ +.|++++| ++++|++|+.||+|+|||+.
T Consensus 352 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence 9999999999997765 67777654 45899999 78899999999999999985
No 86
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-38 Score=315.91 Aligned_cols=295 Identities=12% Similarity=0.082 Sum_probs=220.9
Q ss_pred eeccccccceeEEEECCC------CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 136 TILEGHTSEVCACAWSPA------GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~------~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
.++.+|.+.|.+++|+|+ +.+||||+.||+|+||++..+...... .............|...|++++|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------~~~~~~p~~~l~~h~~~v~sv~~ 274 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------FKMCEKPSLTLSLADSLITTFDF 274 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------EECCCSCSEEECCTTTCEEEEEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------ceeecCceEEEEcCCCCEEEEEe
Confidence 346778999999999997 579999999999999999765422100 00000000112345688999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCc--eeEEecCCCCCEEEE--EecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 210 NGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSL--KWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 210 s~~~~~l~sg~~dg~i~iw~~~~~--~~~~~~~h~~~V~~l--~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+++ .+|++|+.||+|++||+... ....+.+|.++|++| .|+|++ ++|+|||.|++|+|||++++++...+..|.
T Consensus 275 s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 275 LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp SSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred cCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence 986 48999999999999998742 345688999999999 578887 899999999999999999988777776665
Q ss_pred c--CeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee
Q 011224 285 G--PTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 361 (490)
Q Consensus 285 ~--~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 361 (490)
. .+.++.|.+ ...+++++.|++|++|+++....+..+.+|.+.|++|+|+|+|++|++|+.||+|+|||+..+ .+.
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~ 432 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLH 432 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTT
T ss_pred ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hcc
Confidence 3 466788876 457888899999999999998888889999999999999999999999999999999998654 333
Q ss_pred eecc-----ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-CCeEEEEeeCCCCCEEEEEECCCC---CE
Q 011224 362 DLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTG---EY 432 (490)
Q Consensus 362 ~~~~-----~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spdg---~~ 432 (490)
.++. +...+++++|+|++. ++ .. .+ .+++|+.. ++.++..+.+|..+|++|+|+|++ .+
T Consensus 433 ~~~~~~~~~~~~~v~~v~~sp~g~---------~~-~~-~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~ 500 (524)
T 2j04_B 433 GIKNSSATQKSLRLWKWDYSIKDD---------KY-RI-DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKC 500 (524)
T ss_dssp CC------CCCCEEEECBCCSSSC---------EE-EE-CC-CCCCCC-------------CCCSCCCEEECCSTTTTTE
T ss_pred ccccCccceeeeEEEEeccCCCCC---------eE-Ec-cC-CceecccccCCcceeeecCCCceEEEEECCCCCCccHH
Confidence 2221 112467899999875 22 22 22 34455443 467788899999999999999996 49
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 011224 433 LASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 433 l~s~s~dg~i~iw~~~~~ 450 (490)
||+|+.||.|+||++.-.
T Consensus 501 lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 501 YAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEEECTTSEEEEEECSCC
T ss_pred HHhhccCceEEEEEcccc
Confidence 999999999999998743
No 87
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6e-37 Score=296.54 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=216.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCC-------eEEEEECCCce-----------eEEecCCCCCEEEEEecCCCCEEEEE--
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDG-------QARIWSTNGDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTG-- 260 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg-------~i~iw~~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~-- 260 (490)
..||++++|+|++++|++||.+. .|++|+..... ...+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 46899999999999999998643 59999975321 13467888888888765 4556654
Q ss_pred ---------eCCCeEEEEEccCcceeEeeee---------eccCeEEEEccCCc-eE--EEEcCCCeEEEEEcCCCccee
Q 011224 261 ---------SCDKTAIVWDVKTEEWKQQFEF---------HSGPTLDVDWRNNV-SF--ATSSTDNMIYVCKIGENRPIK 319 (490)
Q Consensus 261 ---------s~D~~v~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~--~~~~~d~~i~~~~~~~~~~~~ 319 (490)
+.|+++++|++.+......+.. +...+..+.|.++. .+ ++++.|++|++|++.+..++.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 4578899999876542221111 11235567776543 33 345578999999999998888
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee--eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC
Q 011224 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397 (490)
Q Consensus 320 ~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d 397 (490)
.+. |.+.|.+++|+|+|+++++++.+ .+++|+..++..+. ....|...+.+++|+|++. ++++++.|
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~---------~l~~~s~d 240 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT---------VLIAASLK 240 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE---------EEEEEEES
T ss_pred EeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC---------EEEEEecC
Confidence 775 77889999999999999999865 56666666665543 3456788899999999986 78888888
Q ss_pred C----cEEEEeCCCCeE----EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE-ecC-CCEEEEEE
Q 011224 398 S----TVKLWDVELGKL----LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TGN-GGIFEVCW 467 (490)
Q Consensus 398 g----~i~iwd~~~~~~----~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~-~~~-~~v~~~~~ 467 (490)
+ .+++|++..... ...+.+|..+|++++|||+|++||+|+.|++|+|||+.+++++.++ .+| ..|++++|
T Consensus 241 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 241 KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred CcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 7 688899876653 3567889999999999999999999999999999999999999886 444 56999999
Q ss_pred CCCCCEEEEEECCCcEEEEEee
Q 011224 468 NKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+|||++||+|+.|++|+||++.
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEEcC
Confidence 9999999999999999999984
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.2e-37 Score=292.70 Aligned_cols=269 Identities=14% Similarity=0.193 Sum_probs=237.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCce----eEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEc-c
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDV-K 272 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~----~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~-~ 272 (490)
+|...|++++|+|++++|++|+.|+.|+||+..... ...+..|..+|++++|+|+++ +|++|+.|+.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 567889999999999999999999999999976543 456668999999999999999 9999999999999999 7
Q ss_pred CcceeEeeee--eccCeEEEEccCCceEEEEcCCCeEEEEEcCC---------CcceeEecCCCCCeeEEEEcCCCCEEE
Q 011224 273 TEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------NRPIKTFAGHQGEVNCVKWDPTGSLLA 341 (490)
Q Consensus 273 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---------~~~~~~~~~h~~~v~~v~~~~~~~~l~ 341 (490)
++.. ..+.. |...+.++.|.+...+++++.|+.|++|++.. ..++..+. |...|.+++|+|++ ++
T Consensus 89 ~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~ 164 (342)
T 1yfq_A 89 SPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LI 164 (342)
T ss_dssp SSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EE
T ss_pred CCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EE
Confidence 7765 56666 88899999987677889999999999999987 66666666 88999999999987 89
Q ss_pred EEeCCCeEEEEecCC-Cce--eeeeccccccEEEEEEcC-CCCCCCCCCCcEEEEEEECCCcEEEEeCCCC------eEE
Q 011224 342 SCSDDVTAKIWNMKQ-DKY--VHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELG------KLL 411 (490)
Q Consensus 342 s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~------~~~ 411 (490)
+++.|+.|++||+++ +.. ......+...+.+++|+| ++. +|++|+.||.|++|+++.. +.+
T Consensus 165 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~---------~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE---------GYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC---------EEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC---------EEEEEecCCcEEEEEEcCCCcccccccc
Confidence 999999999999988 543 334456778999999999 875 7999999999999999876 777
Q ss_pred EEeeCCCC---------CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC--CCEEEEEECCCCCEEEEEECC
Q 011224 412 YSLNGHRE---------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 412 ~~~~~h~~---------~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~--~~v~~~~~~~~g~~la~~~~d 480 (490)
..+.+|.. +|++++|+|++++|++|+.||.|++||+.+++++..+.++ ..|.+++ |+|++|++|+.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~D 313 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSD 313 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEEC
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecC
Confidence 88888865 9999999999999999999999999999999999888765 4588998 999999999999
Q ss_pred Cc
Q 011224 481 HT 482 (490)
Q Consensus 481 ~~ 482 (490)
++
T Consensus 314 g~ 315 (342)
T 1yfq_A 314 DT 315 (342)
T ss_dssp TH
T ss_pred Cc
Confidence 98
No 89
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-35 Score=295.76 Aligned_cols=280 Identities=24% Similarity=0.442 Sum_probs=248.1
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
..+..+.+|...|.+++|+ +.+|++|+.||+|++||+.++.. ...+ ..|...|.+++|+
T Consensus 150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~-------------~~~~----~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC-------------IHTL----YGHTSTVRCMHLH-- 208 (445)
T ss_dssp CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE-------------EEEE----CCCSSCEEEEEEE--
T ss_pred cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE-------------EEEE----CCCCCcEEEEEec--
Confidence 3456788999999999997 67999999999999999876531 1222 2456789999996
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 213 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
+.++++|+.||.|++|+.. +.....+.+|..+|.+++| ++.+|++|+.|++|++||+++++....+..|...+.++.
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 286 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence 5789999999999999976 4566788899999999999 678999999999999999999999999999999999999
Q ss_pred ccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc---ccc
Q 011224 292 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSK 368 (490)
Q Consensus 292 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~ 368 (490)
+ +...+++++.|+.|++|++.++..+..+.+|...+.++.++ ++++++|+.||.|++||+.+++.+..+.. |..
T Consensus 287 ~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 363 (445)
T 2ovr_B 287 F-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS 363 (445)
T ss_dssp E-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred E-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCC
Confidence 9 66788999999999999999999999999999999988874 67999999999999999999999888876 888
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-----eCCCCCEEEEEECCCCCEEEEEeCCCc--
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLDKS-- 441 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~spdg~~l~s~s~dg~-- 441 (490)
.|.+++|++. +|++|+.||.|++||+.+++.+..+ .+|...|++++|+|++.+||+|+.||+
T Consensus 364 ~v~~~~~~~~-----------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 364 AVTCLQFNKN-----------FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 432 (445)
T ss_dssp CEEEEEECSS-----------EEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred CEEEEEECCC-----------EEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCc
Confidence 9999999642 7999999999999999999998888 468889999999999999999999998
Q ss_pred --EEEEEcCC
Q 011224 442 --MHIWSLKE 449 (490)
Q Consensus 442 --i~iw~~~~ 449 (490)
|.+||+..
T Consensus 433 ~~l~v~df~~ 442 (445)
T 2ovr_B 433 TKLLVLDFDV 442 (445)
T ss_dssp CEEEEEECCC
T ss_pred cEEEEEECCC
Confidence 99999864
No 90
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=310.82 Aligned_cols=300 Identities=12% Similarity=0.134 Sum_probs=239.0
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEee-------------e---cccccCCCC
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-------------K---GRTNEKSKD 203 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~ 203 (490)
.-..+|.+++|||||+++||||.|++|+ +...+.... .++..+..+... . .....+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~---gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDIN---CNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY 87 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCS---SBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccceec---CCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence 3457899999999999999999999999 655554332 222222222110 0 011134678
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCC-----CEEEEEecCCCCEEEEEeCCCeEEEEEccCcce--
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-- 276 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~-----~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~-- 276 (490)
|.+++|||+|.+|++++.||.|+||+..+ ....+. |.. .|.+++|+|+|++|++|+.||+|++||+.++..
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~ 165 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT 165 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence 99999999999999999999999999665 555566 665 499999999999999999999999999998753
Q ss_pred -----eEee----eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcc---eeEe-cCCCCCeeEEEEcCCCCEEEEE
Q 011224 277 -----KQQF----EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTF-AGHQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 277 -----~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~-~~h~~~v~~v~~~~~~~~l~s~ 343 (490)
+.++ ..|...|.+++|.++. +++++.|+++++|++..+.. ...+ .+|...|.+++|+ |+.||++
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa 242 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLT 242 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEE
T ss_pred ccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEE
Confidence 4555 4456789999999888 99999999999999988763 3456 4888999999999 6899988
Q ss_pred eCCCeEEEEecCCCceeeeeccccccEEEEEE--cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCE
Q 011224 344 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 421 (490)
Q Consensus 344 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~--~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v 421 (490)
+ +++|++||+.+++......+|...+..++| +|++. .|++++.||+ ++|...
T Consensus 243 ~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~---------~La~a~edG~-klw~~d--------------- 296 (588)
T 2j04_A 243 C-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST---------ILLMSNKTSY-KVLLED--------------- 296 (588)
T ss_dssp C-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE---------EEEECSSCEE-EEEESS---------------
T ss_pred e-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC---------EEEEEcCCCC-EEEeec---------------
Confidence 7 699999999988774444479999999999 88885 7899999999 999876
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEEC
Q 011224 422 YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~ 479 (490)
.++|+|++..+++. |+++++|+...+. ...+.+...|++++|||+|+.+|+++.
T Consensus 297 -~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 -ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred -cEEECCCceEEEEc--CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEe
Confidence 26699999988875 9999999975444 334444445899999999999998853
No 91
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=277.49 Aligned_cols=294 Identities=24% Similarity=0.443 Sum_probs=233.9
Q ss_pred cCCCceeeccc--ccc--ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE
Q 011224 130 IPNSDVTILEG--HTS--EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 205 (490)
Q Consensus 130 ~~~~~~~~l~~--H~~--~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 205 (490)
+|..+.++|.+ ..+ -.++|+||+++ +||+| .|++|+|||+.+++.. +.+. ...|...|+
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~-------------~~~~--~~~~~~~V~ 71 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL-------------QLLQ--MEQPGEYIS 71 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE-------------EEEE--CCSTTCCEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE-------------EEEE--ecCCCCeEE
Confidence 45555555542 222 25789999986 66655 5999999999876521 1111 234567899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc-eeEeeeee
Q 011224 206 TLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFH 283 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~ 283 (490)
+++|+|++++|++|+.||+|++|+... .....+.+|...+.++.+ .+..+++|+.++.+++|+..... ....+..|
T Consensus 72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence 999999999999999999999999875 456678899998887655 56789999999999999987654 45667778
Q ss_pred ccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcc----eeEecCCCCCeeEEEEcCCCCE---EEEEeCCCeEEEEecC
Q 011224 284 SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSL---LASCSDDVTAKIWNMK 355 (490)
Q Consensus 284 ~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~~---l~s~~~dg~i~iwd~~ 355 (490)
...+..+.+. ....+++++.|+.|++|++..++. ......|.+.|.+++++|++.. +++++.+++|++||..
T Consensus 150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 8888888775 456788999999999999987543 3455678889999999998764 3467789999999998
Q ss_pred CCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
........ .+...+..+.|+|.+. .+++++|+.|+.|++||+++++++.++.+|..+|++|+|+|+|++|||
T Consensus 230 ~~~~~~~~-~~~~~v~~~~~~~~~~-------~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 230 SGACLSAV-DAHSQVCSILWSPHYK-------ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp TCCEEEEE-ECSSCEEEEEEETTTT-------EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred cccccccc-cceeeeeeeeeccccc-------ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 87766544 4567789999999875 223344558999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEcCCC
Q 011224 436 GSLDKSMHIWSLKEG 450 (490)
Q Consensus 436 ~s~dg~i~iw~~~~~ 450 (490)
||.||+|+|||+.+.
T Consensus 302 ~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 302 AAADETLRLWRCFEL 316 (318)
T ss_dssp EETTTEEEEECCSCC
T ss_pred EecCCeEEEEECCCC
Confidence 999999999998754
No 92
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.6e-36 Score=281.90 Aligned_cols=247 Identities=28% Similarity=0.558 Sum_probs=223.9
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEcCCCeEEEEEc
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKI 312 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~ 312 (490)
....+.+|.++|++++|+|++++|++|+.|+.|++|++.+++....+..|...+.++.|.+ ...+++++.|+.|++|++
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 4557889999999999999999999999999999999999999999999999999999965 467889999999999999
Q ss_pred CCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEE
Q 011224 313 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 313 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
.....+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...+.+++|+|++. +|+
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~ 165 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIV 165 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------EEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC---------EEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999886 789
Q ss_pred EEECCCcEEEEeCCCCeEEEEee-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCC----EEEEEE
Q 011224 393 SASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG----IFEVCW 467 (490)
Q Consensus 393 sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~----v~~~~~ 467 (490)
+|+.||.|++||+++++.+..+. .+..+|..++|+|++++|++++.|+.|++||+.+++.+..+.++.. +.....
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 99999999999999998887764 4667899999999999999999999999999999999988876432 233334
Q ss_pred CCCCCEEEEEECCCcEEEEEee
Q 011224 468 NKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+++.+|++|+.|+.|+|||++
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETT
T ss_pred eCCCcEEEEECCCCEEEEEECC
Confidence 4678999999999999999975
No 93
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=290.32 Aligned_cols=281 Identities=16% Similarity=0.295 Sum_probs=233.2
Q ss_pred cCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCcee-EEe-------------cCCCCCEEEEEecC-CCCEEEEEeC
Q 011224 199 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-CTL-------------SKHKGPIFSLKWNK-KGDYLLTGSC 262 (490)
Q Consensus 199 ~~~~~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~-~~~-------------~~h~~~V~~l~~~~-~~~~l~s~s~ 262 (490)
.|...|++++|+| ++++|++|+.||.|++|+...... ..+ .+|..+|++++|+| ++.+|++++.
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 4678999999999 999999999999999999865321 111 25999999999999 7789999999
Q ss_pred CCeEEEEEccCcceeEeeeeeccCeEEEEccC----CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 338 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 338 (490)
|++|++||+.++.....+. +...+..+.+.. ...+++++.++.|++|++.....+..+.+|.+.|.+++|+|+++
T Consensus 121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC
Confidence 9999999999988777765 455666766643 34788999999999999999999999999999999999999998
Q ss_pred -EEEEEeCCCeEEEEecCCCc-eeeee---------------ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEE
Q 011224 339 -LLASCSDDVTAKIWNMKQDK-YVHDL---------------REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 401 (490)
Q Consensus 339 -~l~s~~~dg~i~iwd~~~~~-~~~~~---------------~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 401 (490)
+|++|+.||.|++||+++.. .+..+ ..|...|.+++|+|++. +|++++.||.|+
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~dg~i~ 270 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL---------HLLTVGTDNRMR 270 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS---------EEEEEETTSCEE
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC---------EEEEecCCCeEE
Confidence 58999999999999998765 23333 56888999999999886 799999999999
Q ss_pred EEeCCCCeEEEEeeCCC-----CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEE
Q 011224 402 LWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIA 475 (490)
Q Consensus 402 iwd~~~~~~~~~~~~h~-----~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la 475 (490)
+||+.+++....+.++. ..+........+..+++++.|+.|++|++.+++.+..+.++ ..|.+++|+|+|++|+
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 350 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY 350 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE
Confidence 99999887655443321 12222222334566777788999999999999999998765 5699999999999999
Q ss_pred EEECCCcEEEEEee
Q 011224 476 ACFANHTVCVLDFR 489 (490)
Q Consensus 476 ~~~~d~~v~v~~~~ 489 (490)
+|+.||.|+|||++
T Consensus 351 s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 351 SGSRDCNILAWVPS 364 (408)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EECCCCeEEEEeCC
Confidence 99999999999986
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=292.81 Aligned_cols=300 Identities=13% Similarity=0.053 Sum_probs=231.7
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCC---CCCCCCCCCc------e---------eEE-------E------
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGT---SNGGAQNGPL------N---------VLV-------L------ 190 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~---~~~~~~~~~~------~---------~~~-------~------ 190 (490)
..+|++++|+|+|++|+++ .++.|++||+.++. .......... . ... .
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999976665 57899999998876 2111000000 0 000 0
Q ss_pred ---------EeeecccccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECC--C-ceeEEec--CCCCCEEEEEecCCCC
Q 011224 191 ---------KHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN--G-DLKCTLS--KHKGPIFSLKWNKKGD 255 (490)
Q Consensus 191 ---------~~~~~~~~~~~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~--~-~~~~~~~--~h~~~V~~l~~~~~~~ 255 (490)
.........+...|.+++|+|++++| ++|+.||.|+||+.. . .....+. .|...|++++|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 00000112345679999999999996 899999999999976 3 4444554 6778999999999999
Q ss_pred EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC
Q 011224 256 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 335 (490)
Q Consensus 256 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 335 (490)
+|++|+.|+.|++|++.++.... .++..+.+|...|.+++|+|
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~~~~sp 205 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEK-------------------------------------FTQEPILGHVSMLTDVHLIK 205 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSS-------------------------------------CCCCCSEECSSCEEEEEEEE
T ss_pred EEEEEeCCCcEEEEecCCccccc-------------------------------------ccceeeecccCceEEEEEcC
Confidence 99999999999999987654211 02234567889999999999
Q ss_pred C---CCEEEEEeCCCeEEEEecCCCceeee-eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE
Q 011224 336 T---GSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 411 (490)
Q Consensus 336 ~---~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~ 411 (490)
+ +++|++|+.|++|++||+.++..+.. +.+|...|.+++|+ ++. +|++|+.|+.|++||+.+++++
T Consensus 206 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~---------~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 206 DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY---------LLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT---------EEEEEESSSEEEEEETTTCCEE
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC---------EEEEEeCCCeEEEEECCCCcEe
Confidence 9 99999999999999999999988877 55899999999999 775 8999999999999999999988
Q ss_pred EEeeC-------------------------CCCCEEEEEECCCCCEEEEEe-CCCcEEEEEc--CCC---eEEEEEecCC
Q 011224 412 YSLNG-------------------------HREPVYSLAFSPTGEYLASGS-LDKSMHIWSL--KEG---KIVKTYTGNG 460 (490)
Q Consensus 412 ~~~~~-------------------------h~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~--~~~---~~~~~~~~~~ 460 (490)
..+.. +...|.+|+|+|++++|++++ .|+.|+||++ .++ +.+..+..++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~ 355 (450)
T 2vdu_B 276 STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY 355 (450)
T ss_dssp EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS
T ss_pred eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC
Confidence 88763 235799999999999999998 8999999999 565 6677787778
Q ss_pred CEEEEEECCCCCEEEEEEC------CCcEEEEEee
Q 011224 461 GIFEVCWNKEGDKIAACFA------NHTVCVLDFR 489 (490)
Q Consensus 461 ~v~~~~~~~~g~~la~~~~------d~~v~v~~~~ 489 (490)
.|.+++|+|++.+++++.. +..|.||.++
T Consensus 356 ~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 356 NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred ceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8999999996534433343 4558888764
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2e-36 Score=297.19 Aligned_cols=281 Identities=18% Similarity=0.293 Sum_probs=228.4
Q ss_pred ceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCCEEEEEeC
Q 011224 144 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSY 221 (490)
Q Consensus 144 ~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~l~sg~~ 221 (490)
....++++|+.. ++++|+.||.|+||++....... .......+|...|++++|+| ++.+|++|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 455689999875 55578999999999985432110 01112345678999999999 9999999999
Q ss_pred CCeEEEEECCC--------ceeEEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 222 DGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 222 dg~i~iw~~~~--------~~~~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
||.|+||+... .....+.+|...|++++|+|++ ++|++|+.|++|++||+.+++..
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------- 167 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV--------------- 167 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE---------------
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc---------------
Confidence 99999999764 3456788999999999999998 69999999999999999876432
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEe--cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee-cccccc
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTF--AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-REHSKE 369 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~ 369 (490)
..+ .+|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|...
T Consensus 168 --------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 221 (402)
T 2aq5_A 168 --------------------------LTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT 221 (402)
T ss_dssp --------------------------EEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS
T ss_pred --------------------------EEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC
Confidence 234 568889999999999999999999999999999999998888 677665
Q ss_pred -EEEEEEcCCCCCCCCCCCcEEEEEE---ECCCcEEEEeCCCCeE-EEEe-eCCCCCEEEEEECCCCCEEEE-EeCCCcE
Q 011224 370 -IYTIRWSPTGSGTNNPNQQLILASA---SFDSTVKLWDVELGKL-LYSL-NGHREPVYSLAFSPTGEYLAS-GSLDKSM 442 (490)
Q Consensus 370 -i~~v~~~p~g~~~~~~~~~~~l~sg---s~dg~i~iwd~~~~~~-~~~~-~~h~~~v~~l~~spdg~~l~s-~s~dg~i 442 (490)
+.++.|+|++. +|++| +.|+.|++||++++.. +... ..|...|.+++|+|++++|++ |+.||.|
T Consensus 222 ~~~~~~~~~~~~---------~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 222 RPVHAVFVSEGK---------ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp SCCEEEECSTTE---------EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred cceEEEEcCCCc---------EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 89999999875 78888 6899999999987654 2222 246778999999999999975 5579999
Q ss_pred EEEEcCCCe----EEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 443 HIWSLKEGK----IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 443 ~iw~~~~~~----~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++|++.+++ .+..+.+...+.+++|+|++.++++ .++.+++|++.
T Consensus 293 ~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 293 RYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp EEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred EEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 999999887 2334444567999999999998775 56689999874
No 96
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=311.73 Aligned_cols=244 Identities=26% Similarity=0.405 Sum_probs=213.6
Q ss_pred cccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC------ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEE
Q 011224 197 TNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269 (490)
Q Consensus 197 ~~~~~~~V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~------~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iw 269 (490)
...|...|++++|++++ .+|+||+.|++|+||++.. .....+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 44678999999999864 7999999999999999753 2345788999999999999999999999999999999
Q ss_pred EccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeE
Q 011224 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349 (490)
Q Consensus 270 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i 349 (490)
|+.++.. +..+.+|...|.+++|+|++++|++|+.|++|
T Consensus 458 d~~~~~~-----------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i 496 (694)
T 3dm0_A 458 DLAAGVS-----------------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496 (694)
T ss_dssp ETTTTEE-----------------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred ECCCCcc-----------------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEE
Confidence 9977542 23456899999999999999999999999999
Q ss_pred EEEecCCCceeee---eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEE
Q 011224 350 KIWNMKQDKYVHD---LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 350 ~iwd~~~~~~~~~---~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 426 (490)
+|||......... ...|...|.+++|+|++.. .+|++|+.|++|++||+++++++..+.+|...|++++|
T Consensus 497 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~ 569 (694)
T 3dm0_A 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ-------PTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAV 569 (694)
T ss_dssp EEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS-------CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc-------ceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 9999865543322 2467888999999998631 27899999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+|+|++|++|+.||+|++||+.+++.+..+..+..+.+++|+|++.+|+++. ++.|+|||++
T Consensus 570 spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 570 SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp CTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETT
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECC
Confidence 9999999999999999999999999988888788899999999999888776 4569999975
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-35 Score=285.48 Aligned_cols=241 Identities=20% Similarity=0.388 Sum_probs=213.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcce
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 276 (490)
|..+|++++|+|++++|++|+.|+.|++|+.... ....+.+|...|.+++|+|++++|++++.|++|++||+.++++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 5678999999999999999999999999998765 6678889999999999999999999999999999999977653
Q ss_pred eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
... ..+.+|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 87 ~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 87 KPT---------------------------------------LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp EEE---------------------------------------EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred eee---------------------------------------EEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence 221 12356788899999999999999999999999999988
Q ss_pred Cce---e-eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeC------------------CCCeEEEEe
Q 011224 357 DKY---V-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV------------------ELGKLLYSL 414 (490)
Q Consensus 357 ~~~---~-~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~------------------~~~~~~~~~ 414 (490)
+.. . .....|...+.+++|+|++. +|++|+.||.|++||+ ..++.+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 128 ENDWWVCKHIKKPIRSTVLSLDWHPNSV---------LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp TTTEEEEEEECTTCCSCEEEEEECTTSS---------EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred CCcceeeeeeecccCCCeeEEEEcCCCC---------EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 763 2 23356788999999999885 7999999999999995 467888999
Q ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 415 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 415 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+..+. .+.+++|+|+|.+|++| .|+.|.+|+++
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 9999999999999999999999999999999999999988887654 69999999999988888 89999999986
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.3e-36 Score=299.89 Aligned_cols=265 Identities=20% Similarity=0.291 Sum_probs=202.5
Q ss_pred eeeccccccceeEEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
...+.+|.+.|++|+|+| ++.+|+|||.|++|++||+.++.. ..+. ....+...+.+++|+|++
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~ 221 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL--------------RVFA-SSDTINIWFCSLDVSASS 221 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE--------------EEEE-CCSSCSCCCCCEEEETTT
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce--------------eEEe-ccCCCCccEEEEEECCCC
Confidence 345679999999999998 689999999999999999865321 1111 112234568899999999
Q ss_pred CEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 214 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
.+|++|+.||.|++|++.+.....+.+|...|++++|+|++. +|++|+.|++|++||+++.....
T Consensus 222 ~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~-------------- 287 (435)
T 4e54_B 222 RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA-------------- 287 (435)
T ss_dssp TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS--------------
T ss_pred CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc--------------
Confidence 999999999999999998888888899999999999999886 67899999999999998754221
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccc----
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK---- 368 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---- 368 (490)
.+....+|...|++++|+|+|++|++|+.||+|+|||+.++.....+..|..
T Consensus 288 ------------------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 288 ------------------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp ------------------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred ------------------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence 1122357899999999999999999999999999999999887766655432
Q ss_pred --cEEEEEEcCCCCCC---CCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-CCCCCEEEE-EECCCCCEEEEEeCCCc
Q 011224 369 --EIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSL-AFSPTGEYLASGSLDKS 441 (490)
Q Consensus 369 --~i~~v~~~p~g~~~---~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l-~~spdg~~l~s~s~dg~ 441 (490)
.+....|+|.+... ..++...+++++..++.|++||..+++.+..+. +|...|.++ +|||+|++||+|+ |+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~ 422 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYH 422 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSE
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCc
Confidence 23345666665410 001111122223345689999999999988864 688889887 6999999999886 789
Q ss_pred EEEEEcCCCeEE
Q 011224 442 MHIWSLKEGKIV 453 (490)
Q Consensus 442 i~iw~~~~~~~~ 453 (490)
|+||++.+|+..
T Consensus 423 i~iW~~~~gk~r 434 (435)
T 4e54_B 423 ILIWSQQEARTR 434 (435)
T ss_dssp EEECCCC-----
T ss_pred EEEEECCcCeee
Confidence 999999988753
No 99
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-35 Score=283.69 Aligned_cols=256 Identities=25% Similarity=0.398 Sum_probs=215.1
Q ss_pred eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc--CcceeEeeeeeccCeEEEEcc-C--CceEEEEcCCCeEE
Q 011224 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWR-N--NVSFATSSTDNMIY 308 (490)
Q Consensus 234 ~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~d~~i~ 308 (490)
....+.+|.++|++++|+|++++|++|+.|++|++||+. +......+..|..++.++.|. + ...+++++.|+.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 345678999999999999999999999999999999998 556677788899999999995 3 57889999999999
Q ss_pred EEEcCCCc--ceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEEecCCCc--eeeeeccccccEEEEEEcCCCCCC
Q 011224 309 VCKIGENR--PIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSGT 382 (490)
Q Consensus 309 ~~~~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~v~~~p~g~~~ 382 (490)
+|++..+. .+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+.. ....+..|...|.+++|+|.....
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99999886 77788899999999999999 9999999999999999998874 344566889999999999942100
Q ss_pred CC----CCCcEEEEEEECCCcEEEEeCCCCe----EEEEeeCCCCCEEEEEECCC---CCEEEEEeCCCcEEEEEcCCCe
Q 011224 383 NN----PNQQLILASASFDSTVKLWDVELGK----LLYSLNGHREPVYSLAFSPT---GEYLASGSLDKSMHIWSLKEGK 451 (490)
Q Consensus 383 ~~----~~~~~~l~sgs~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd---g~~l~s~s~dg~i~iw~~~~~~ 451 (490)
.. .....+|++|+.||.|++||++++. .+..+.+|..+|++++|+|+ +.+|++++.||.|++|++.++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 00 0001278999999999999997653 55678899999999999999 8999999999999999998864
Q ss_pred ---EEEEEe---cCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 452 ---IVKTYT---GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 452 ---~~~~~~---~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
....+. ....|.+++|+|+|++|++++.|+.|+||+++
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 222222 34569999999999999999999999999986
No 100
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-34 Score=277.09 Aligned_cols=248 Identities=19% Similarity=0.362 Sum_probs=215.8
Q ss_pred EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc----ceeEeeeeeccCeEEEEccC---CceEEEEcCCCeEE
Q 011224 236 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIY 308 (490)
Q Consensus 236 ~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~ 308 (490)
..+.+|.++|++++|+|++++|++|+.||+|++||+.++ .....+..|..++.++.|.+ ...+++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356799999999999999999999999999999999876 35667778999999999975 67889999999999
Q ss_pred EEEcCCC---------cceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEEEEecCCCceeeeec-------------
Q 011224 309 VCKIGEN---------RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLR------------- 364 (490)
Q Consensus 309 ~~~~~~~---------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------- 364 (490)
+|++... .++..+.+|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 557788899999999999999 9999999999999999998887654433
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE--EEEeeCCCCCEEEEEECCCC----CEEEEEeC
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTG----EYLASGSL 438 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg----~~l~s~s~ 438 (490)
.+...+.++.|+|+... ..+|++++.++.+.+|+...++. +..+.+|...|++++|+|++ ++|++|+.
T Consensus 165 ~~~~~~~~~~~~p~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFS------PEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp SCSCCCEEEEECCCSSS------CCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred CcccceeEEEeccCCCC------CcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 56778999999997211 12789999999999998887765 67788999999999999998 89999999
Q ss_pred CCcEEEEEcCCC----------------------------------------------eEEEEEecC-CCEEEEEECCCC
Q 011224 439 DKSMHIWSLKEG----------------------------------------------KIVKTYTGN-GGIFEVCWNKEG 471 (490)
Q Consensus 439 dg~i~iw~~~~~----------------------------------------------~~~~~~~~~-~~v~~~~~~~~g 471 (490)
||.|++|++.++ +.+..+.++ ..|++++|+|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 999999999875 455666654 469999999999
Q ss_pred CEEEEEECCCcEEEEEee
Q 011224 472 DKIAACFANHTVCVLDFR 489 (490)
Q Consensus 472 ~~la~~~~d~~v~v~~~~ 489 (490)
++||+|+.|+.|+||++.
T Consensus 319 ~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 319 TILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp CCEEEEETTSCEEEEEEC
T ss_pred CEEEEecCCCcEEEEecC
Confidence 999999999999999985
No 101
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-34 Score=279.73 Aligned_cols=273 Identities=15% Similarity=0.215 Sum_probs=217.0
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEccCcce
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~ 276 (490)
..|...|++++|+|+|++|++|+.++ ++||+......... .+...+..+++.++++.+ ++++.|++|++||+.+++.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 34678899999999999999988775 78999875433222 222357788888888877 5788899999999999998
Q ss_pred eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCC-cceeEecCCCCCeeEEEEcCCCCEEEE--EeCCCeEEEEe
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLAS--CSDDVTAKIWN 353 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s--~~~dg~i~iwd 353 (490)
+..+. +..++.++.+..+..+++ .++.|++|++... +.+..+.. ....+++++ .+++. |+.||.|++||
T Consensus 94 ~~~~~-~~~~v~~v~~~~~~~~~~--~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd 165 (355)
T 3vu4_A 94 VSRIK-VDAPVKDLFLSREFIVVS--YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITK 165 (355)
T ss_dssp EEEEE-CSSCEEEEEECSSEEEEE--ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEE
T ss_pred EEEEE-CCCceEEEEEcCCEEEEE--EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEE
Confidence 88776 456888888877654443 4789999999887 66655554 445566777 56665 68999999999
Q ss_pred cCCCc----------------eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc-EEEEeCCCCeEEEEee-
Q 011224 354 MKQDK----------------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST-VKLWDVELGKLLYSLN- 415 (490)
Q Consensus 354 ~~~~~----------------~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~- 415 (490)
+.++. .+..+.+|...|.+++|+|++. +|++|+.||+ |++||+++++++..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~---------~l~s~s~d~~~v~iwd~~~~~~~~~~~~ 236 (355)
T 3vu4_A 166 LQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD---------MVATCSQDGTIIRVFKTEDGVLVREFRR 236 (355)
T ss_dssp CCC------------------CCEEECCCSSCEEEEEECTTSS---------EEEEEETTCSEEEEEETTTCCEEEEEEC
T ss_pred CCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC---------EEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 98765 2677889999999999999986 8999999998 9999999999999998
Q ss_pred C-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE--EE--------------------Eec--CCCEEEEEECCC
Q 011224 416 G-HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV--KT--------------------YTG--NGGIFEVCWNKE 470 (490)
Q Consensus 416 ~-h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~--~~--------------------~~~--~~~v~~~~~~~~ 470 (490)
+ |..+|++++|+|+|++|++|+.|++|++|++.++... .. +.. ......++|+|+
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 5 9999999999999999999999999999999765311 11 000 112356899999
Q ss_pred CCEEEEEECCCcEEEEEee
Q 011224 471 GDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 471 g~~la~~~~d~~v~v~~~~ 489 (490)
|+.|++++.||.+.+|+++
T Consensus 317 ~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp SEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEEEE
Confidence 9999999999999999875
No 102
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-37 Score=296.77 Aligned_cols=239 Identities=19% Similarity=0.282 Sum_probs=199.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~---~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
..+|++++|+|++++|++|+.|+.|+||+... .....+.+|..+|++++|+|++++|++|+.|++|++||+.++..
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~- 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT- 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-
Confidence 46799999999999999999999999999875 34567889999999999999999999999999999999876530
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
..+...+.+|...|.+++|+|++++|++|+.|+.|++||+.++
T Consensus 90 -------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 132 (377)
T 3dwl_C 90 -------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132 (377)
T ss_dssp -------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred -------------------------------------eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence 1123456678999999999999999999999999999999987
Q ss_pred c---eeeeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC------------------CCeEEEEee
Q 011224 358 K---YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE------------------LGKLLYSLN 415 (490)
Q Consensus 358 ~---~~~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~------------------~~~~~~~~~ 415 (490)
. ....+.. |...|.+++|+|++. +|++|+.||.|++||+. .++++..+
T Consensus 133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 202 (377)
T 3dwl_C 133 NDWWVSKHLKRPLRSTILSLDWHPNNV---------LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY- 202 (377)
T ss_dssp --CCCCEEECSSCCSCEEEEEECTTSS---------EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-
T ss_pred ccceeeeEeecccCCCeEEEEEcCCCC---------EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-
Confidence 6 4667777 899999999999886 89999999999999985 35566667
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE----EEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI----VKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~----~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
+|...|++++|+|++++|++|+.||.|++||+.+++. +..+.++ ..|.+++|+|+|++|++|+.++.+ +|+.
T Consensus 203 ~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 203 PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 8999999999999999999999999999999999876 5666654 459999999999999998876655 7654
No 103
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.4e-35 Score=285.63 Aligned_cols=246 Identities=19% Similarity=0.273 Sum_probs=202.1
Q ss_pred cccccceeEEEECC-CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE
Q 011224 139 EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217 (490)
Q Consensus 139 ~~H~~~V~~~~~sp-~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~ 217 (490)
.+|...|.+++|+| ++.+|++|+.|+.|++||+.+.. ...+.. ...+...|.+++|+|++++|+
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--------------~~~~~~-~~~~~~~v~~~~~~~~~~~l~ 179 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV--------------IQVFAK-TDSWDYWYCCVDVSVSRQMLA 179 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE--------------EEEEEC-CCCSSCCEEEEEEETTTTEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc--------------eEEEec-cCCCCCCeEEEEECCCCCEEE
Confidence 47999999999999 68999999999999999987421 111111 123457799999999999999
Q ss_pred EEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc
Q 011224 218 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296 (490)
Q Consensus 218 sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
+|+.|+.|++|++.+.....+.+|...|.+++|+|++. +|++|+.|++|++||+++....
T Consensus 180 ~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------------- 240 (383)
T 3ei3_B 180 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------------------- 240 (383)
T ss_dssp EEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-------------------
T ss_pred EECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-------------------
Confidence 99999999999998888888999999999999999998 8999999999999999864210
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeeecccc--------
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-------- 367 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------- 367 (490)
...+..+ +|...|.+++|+| ++++|++++.|+.|++||++++..+..+..|.
T Consensus 241 ------------------~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 241 ------------------NSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp ------------------TCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred ------------------cceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 1112233 5888999999999 99999999999999999999888776665443
Q ss_pred ---------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC--CCCCEEEEEECCCCCEEEEE
Q 011224 368 ---------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 368 ---------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spdg~~l~s~ 436 (490)
..+..++|+|++. + +|+.||.|++||+.+++.+..+.+ |...+..++|+|++++|++|
T Consensus 302 ~~~~~~~p~~~~~~~~~s~dg~---------~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYPDDQ---------L--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp CCCCEECSSSSEEEEECBCCTT---------T--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred ceEEeccCCCCceEEEecCCcc---------c--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 2233344555543 2 677999999999999999999987 45778888999999999999
Q ss_pred eCCCcEEEEEcCC
Q 011224 437 SLDKSMHIWSLKE 449 (490)
Q Consensus 437 s~dg~i~iw~~~~ 449 (490)
+ |+.|+||++.+
T Consensus 371 s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 371 M-GFNILIWNRED 382 (383)
T ss_dssp E-TTEEEEEECC-
T ss_pred c-CCcEEEEecCC
Confidence 8 99999999864
No 104
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=279.56 Aligned_cols=280 Identities=19% Similarity=0.314 Sum_probs=230.1
Q ss_pred ccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEECCC--cee-EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011224 198 NEKSKDVTTLDWNGE---GTLLATGSYDGQARIWSTNG--DLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~---~~~l~sg~~dg~i~iw~~~~--~~~-~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 271 (490)
..|...|++++|+|+ |++|++|+.||.|+||+... ... ..+.+|.++|++++|+|++++|++|+.|++|++||+
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 356788999999999 69999999999999999864 333 678899999999999999999999999999999999
Q ss_pred cCcceeEeeeeeccCeEEEEc--cCC-ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCe
Q 011224 272 KTEEWKQQFEFHSGPTLDVDW--RNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~ 348 (490)
.++.... +..|..++.++.| ..+ ..+++++.|+.|++|++...+++..+..|. .+.++.+. ...+++++.++.
T Consensus 116 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~ 191 (368)
T 3mmy_A 116 SSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERG 191 (368)
T ss_dssp TTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGC
T ss_pred CCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCc
Confidence 9988665 5568889999998 544 568899999999999999999888888765 56666665 458889999999
Q ss_pred EEEEecCCCceeeee--ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC---eEEEEeeCCCC----
Q 011224 349 AKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHRE---- 419 (490)
Q Consensus 349 i~iwd~~~~~~~~~~--~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~---~~~~~~~~h~~---- 419 (490)
+++|++......... ..+...+.++.+.+.... ....+++|+.||.|++|+++.. ..+..+.+|..
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred EEEEEeccccchhhhccccccCCCceEEEcccCCC-----CCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 999999876443221 123344555555554321 1234899999999999999987 56777888876
Q ss_pred --------CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 420 --------PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 420 --------~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+|++++|+|++++|++|+.||.|++||+.+++++..+..+ ..|.+++|+|+|++||+|+.|+....|
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 7999999999999999999999999999999999888764 569999999999999999988754433
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.7e-36 Score=296.16 Aligned_cols=274 Identities=20% Similarity=0.384 Sum_probs=208.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCce------------eEEecCCC------------CCEEEEEecCCC-
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------------KCTLSKHK------------GPIFSLKWNKKG- 254 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~------------~~~~~~h~------------~~V~~l~~~~~~- 254 (490)
+...|++++|+|+|++|++|+.||.|+||+..... ...+.+|. .+|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 45789999999999999999999999999976432 56788998 889999999998
Q ss_pred -CEEEEEeCCCeEEEEEccCcceeEee---eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe-cCCCCCee
Q 011224 255 -DYLLTGSCDKTAIVWDVKTEEWKQQF---EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVN 329 (490)
Q Consensus 255 -~~l~s~s~D~~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~ 329 (490)
.+|++++.|++|++||+.++...... ..+.+............+......+ +.. ...+...+ .+|...|.
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMD----LMV-EASPRRIFANAHTYHIN 181 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEE----EEE-EEEEEEEECSCCSSCCC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchh----eee-eccceEEeccCCCcceE
Confidence 79999999999999999775532211 0000100000000000000000000 000 01122333 68999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCC-Cceee-------eeccccccEEEEEEcCCC-CCCCCCCCcEEEEEEECCCcE
Q 011224 330 CVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVH-------DLREHSKEIYTIRWSPTG-SGTNNPNQQLILASASFDSTV 400 (490)
Q Consensus 330 ~v~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~i~~v~~~p~g-~~~~~~~~~~~l~sgs~dg~i 400 (490)
+++|+|++++|++| .|+.|++||+.+ +..+. .+..|...|.+++|+|++ . +|++|+.||.|
T Consensus 182 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~---------~l~s~~~dg~i 251 (447)
T 3dw8_B 182 SISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN---------TFVYSSSKGTI 251 (447)
T ss_dssp EEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT---------EEEEEETTSCE
T ss_pred EEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc---------EEEEEeCCCeE
Confidence 99999999999999 899999999984 44443 356889999999999987 4 79999999999
Q ss_pred EEEeCCCCeE----EEEeeCCCC------------CEEEEEECCCCCEEEEEeCCCcEEEEEcCC-CeEEEEEecCCC--
Q 011224 401 KLWDVELGKL----LYSLNGHRE------------PVYSLAFSPTGEYLASGSLDKSMHIWSLKE-GKIVKTYTGNGG-- 461 (490)
Q Consensus 401 ~iwd~~~~~~----~~~~~~h~~------------~v~~l~~spdg~~l~s~s~dg~i~iw~~~~-~~~~~~~~~~~~-- 461 (490)
++||+++++. +..+.+|.. .|++++|+|+|++|++++. +.|++||+.+ ++.+..+.++..
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9999998886 678888876 8999999999999999999 9999999997 887777776543
Q ss_pred --------------EEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 462 --------------IFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 462 --------------v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++.++|+|+|++|++|+.|+.|+|||++
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 3349999999999999999999999975
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=313.76 Aligned_cols=251 Identities=26% Similarity=0.415 Sum_probs=209.7
Q ss_pred eeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC--C
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--G 213 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~--~ 213 (490)
.++.+|.++|++++|+|++++|++|+.||.|++|++.++. ..... ...+|..+|++++|+++ +
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~----~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLID----TLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----------EEEEE----EECCCSSCEEEEEECCTTSC
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----------Cccce----eccCCcCceEEEEecCCCCC
Confidence 5688999999999999999999999999999999986421 11112 22346788999999988 9
Q ss_pred CEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 214 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
++|++|+.||.|++|+.... ....+.+|..+|++++|+|+ +++|++|+.||+|++||++++...
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~----------- 136 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT----------- 136 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-----------
T ss_pred CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-----------
Confidence 99999999999999998765 45677889999999999999 999999999999999999765321
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-------------CCCEEEEEeCCCeEEEEecC
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-------------TGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-------------~~~~l~s~~~dg~i~iwd~~ 355 (490)
....+.+|...|.+++|+| ++.+|++|+.||+|++||++
T Consensus 137 ----------------------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 137 ----------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp ----------------------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred ----------------------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 1223457888899999999 58999999999999999998
Q ss_pred CC----ceeeeeccccccEEEEEEcCC---CCCCCCCCCcEEEEEEECCCcEEEEeCCCCe-----EEEEeeCCCCCEEE
Q 011224 356 QD----KYVHDLREHSKEIYTIRWSPT---GSGTNNPNQQLILASASFDSTVKLWDVELGK-----LLYSLNGHREPVYS 423 (490)
Q Consensus 356 ~~----~~~~~~~~~~~~i~~v~~~p~---g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~ 423 (490)
++ .+...+..|...|.+++|+|+ +. +|++|+.||.|++||+.++. .+....+|...|++
T Consensus 189 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~---------~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS---------YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp TTTTEEEEEEEECCCSSCEEEEEECCCCSSSE---------EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred CCcccceeeeeecCCCCcEEEEEeccCCCCCC---------EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 77 456677889999999999998 53 89999999999999998764 33344568889999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 424 LAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 424 l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
++|+|+|++|++|+.||.|++|++..
T Consensus 260 l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 260 ASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99999999999999999999999874
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.4e-34 Score=284.95 Aligned_cols=262 Identities=24% Similarity=0.481 Sum_probs=215.7
Q ss_pred eeccccccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 136 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
..+.+|.+.|++++|+|+ +.+|++|+.||.|++|++.............. .+. ....|...|++++|+|++.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~---~~~----~~~~h~~~v~~l~~~~~~~ 194 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ---PDL----RLRGHQKEGYGLSWNPNLN 194 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCC---CSE----EEECCSSCCCCEEECTTST
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCC---CcE----EecCCCCCeEEEEeCCCCC
Confidence 456789999999999998 68999999999999999975322111000000 011 1224567899999999998
Q ss_pred -EEEEEeCCCeEEEEECCCc--------eeEEecCCCCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 215 -LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 215 -~l~sg~~dg~i~iw~~~~~--------~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+|++|+.||.|++|++... ....+.+|...|.+++|+| ++..|++++.|+.|++||++++..
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------- 266 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------- 266 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--------
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--------
Confidence 9999999999999998651 1346678999999999999 678899999999999999986521
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEEecCC-Cceeee
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ-DKYVHD 362 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~ 362 (490)
..++..+.+|...|++++|+|++. +|++|+.||.|++||+++ ...+..
T Consensus 267 ------------------------------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 267 ------------------------------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp ------------------------------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred ------------------------------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 123345567889999999999997 689999999999999997 567888
Q ss_pred eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC--------------CeEEEEeeCCCCCEEEEEECC
Q 011224 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--------------GKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 363 ~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~sp 428 (490)
+..|...|.+++|+|++. .+|++++.||.|++||+.. ...+..+.+|...|++++|+|
T Consensus 317 ~~~h~~~v~~i~~sp~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 317 FESHKDEIFQVQWSPHNE--------TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp EECCSSCEEEEEECSSCT--------TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECS
T ss_pred eecCCCCEEEEEECCCCC--------CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECC
Confidence 888999999999999875 2789999999999999986 367888899999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEEcCCC
Q 011224 429 TGE-YLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 429 dg~-~l~s~s~dg~i~iw~~~~~ 450 (490)
+++ +|++++.||.|+||++.+.
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCEEEEEECCCCEEEeEcccc
Confidence 999 8999999999999998753
No 108
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-34 Score=280.80 Aligned_cols=247 Identities=25% Similarity=0.463 Sum_probs=205.3
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
.|...|++++|+|++++|++|+.||.|++|++.++.. +..+ ..|...|.+++| ++.+|++|
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~----~~~~~~v~~~~~--~~~~l~~~ 192 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-------------LRTM----AGHQARVGCLSW--NRHVLSSG 192 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-------------EEEE----CCCSSCEEEEEE--ETTEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-------------EEEe----cCCCCceEEEEE--CCCEEEEE
Confidence 3899999999999999999999999999999876531 1122 245778999999 46799999
Q ss_pred eCCCeEEEEECC--CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 220 SYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 220 ~~dg~i~iw~~~--~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
+.||.|++|+.. ......+.+|.+.|.+++|+|++.+|++|+.|++|++||++++..
T Consensus 193 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--------------------- 251 (401)
T 4aez_A 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--------------------- 251 (401)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE---------------------
T ss_pred cCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc---------------------
Confidence 999999999986 345667889999999999999999999999999999999876532
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEe--CCCeEEEEecCCCceeeeeccccccEEEEE
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIR 374 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~ 374 (490)
+..+.+|...|.+++|+|++ .++++|+ .|+.|++||+.+++.+..+. +...+.+++
T Consensus 252 --------------------~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~ 310 (401)
T 4aez_A 252 --------------------KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLI 310 (401)
T ss_dssp --------------------EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred --------------------cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE
Confidence 23456788899999999977 4666665 79999999999999888775 567899999
Q ss_pred EcCCCCCCCCCCCcEEEEE--EECCCcEEEEeCCCCeEE--EEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 375 WSPTGSGTNNPNQQLILAS--ASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~s--gs~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
|+|++. +|++ |+.||.|++||+.++... ..+.+|...|++++|+|+|++|++|+.||.|++|++.++
T Consensus 311 ~s~~~~---------~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 311 WSPHSK---------EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp ECSSSS---------EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ECCCCC---------eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999986 5666 448999999999986554 457799999999999999999999999999999999998
Q ss_pred eEEEEE
Q 011224 451 KIVKTY 456 (490)
Q Consensus 451 ~~~~~~ 456 (490)
+.+...
T Consensus 382 ~~~~~~ 387 (401)
T 4aez_A 382 DHVKRP 387 (401)
T ss_dssp ------
T ss_pred cccccc
Confidence 876544
No 109
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=271.12 Aligned_cols=240 Identities=21% Similarity=0.351 Sum_probs=213.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCccee
Q 011224 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
+|...|++++|+|++++|++|+.||.|++|+.. +.....+.+|.+.|++++|+|++++|++++.|++|++||+.+++..
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 467889999999999999999999999999975 4566788899999999999999999999999999999999876543
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC-----CeEEEE
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIW 352 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----g~i~iw 352 (490)
.. +. |...|.+++|+|++++|++++.+ |.|++|
T Consensus 110 ~~-----------------------------------------~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 110 AT-----------------------------------------WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp EE-----------------------------------------EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred EE-----------------------------------------ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 22 22 55678999999999999999999 999999
Q ss_pred ecCCCce-----------eeeeccccc--cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEEEeeCCC
Q 011224 353 NMKQDKY-----------VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHR 418 (490)
Q Consensus 353 d~~~~~~-----------~~~~~~~~~--~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~ 418 (490)
|+..... +..+..+.. .+.+++|+|++. +|++++.||.|++||+++ +..+..+..|.
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 218 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK---------YIIAGHKDGKISKYDVSNNYEYVDSIDLHE 218 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC---------EEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC---------EEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence 9876542 333444554 899999999886 789999999999999998 78889999999
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCC--------------cEE
Q 011224 419 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANH--------------TVC 484 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~--------------~v~ 484 (490)
..|.+++|+|++++|++++.|+.|++||+.+++.+..+.....+..++|+|+++++++++.++ .+.
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 999999999999999999999999999999999999998888899999999999999999988 788
Q ss_pred EEEee
Q 011224 485 VLDFR 489 (490)
Q Consensus 485 v~~~~ 489 (490)
+||++
T Consensus 299 ~~d~~ 303 (369)
T 3zwl_B 299 FYHKI 303 (369)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 88864
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.2e-34 Score=276.43 Aligned_cols=278 Identities=12% Similarity=0.150 Sum_probs=209.6
Q ss_pred eeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
+..+.+|...|++++|||||++|++|+.|+ +++|++.++.. ... .. ...+..++|.++++
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-------------~~~--~~----~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-------------IMS--QE----MRHLSKVRMLHRTN 71 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-------------EEE--EE----CSCCCEEEECTTSS
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-------------eee--ee----cCCeEEEEEcCCCC
Confidence 345678999999999999999999998775 78999764321 001 11 12477888898888
Q ss_pred EE-EEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc-ceeEeeeeeccCeEEEE
Q 011224 215 LL-ATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 215 ~l-~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~ 291 (490)
++ ++|+.|+.|+|||.... ....+. |..+|.+++|+++. ++++ .|++|++||+.++ +.+..+.. ...+..+.
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s 146 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFS 146 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEE
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEE
Confidence 77 56788899999997654 444454 77799999998863 4443 4889999999987 55555544 22233333
Q ss_pred ccCCceEEE--EcCCCeEEEEEcCCCc---------------c-eeEecCCCCCeeEEEEcCCCCEEEEEeCCCe-EEEE
Q 011224 292 WRNNVSFAT--SSTDNMIYVCKIGENR---------------P-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIW 352 (490)
Q Consensus 292 ~~~~~~~~~--~~~d~~i~~~~~~~~~---------------~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~-i~iw 352 (490)
+ ..++. ++.++.|++|++.... + +..+.+|.+.|.+++|+|+|++|++|+.|++ |+||
T Consensus 147 ~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 147 N---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp T---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred c---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 3 33443 6889999999998754 3 7889999999999999999999999999998 9999
Q ss_pred ecCCCceeeeec-c-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE--EEEe--------------
Q 011224 353 NMKQDKYVHDLR-E-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSL-------------- 414 (490)
Q Consensus 353 d~~~~~~~~~~~-~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~-------------- 414 (490)
|+++++++..+. + |...|.+++|+|++. +|++|+.|++|++||+..+.. ...+
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~---------~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGS---------KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS 294 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSC---------EEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCC---------EEEEEECCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence 999999999998 5 899999999999986 899999999999999975421 1111
Q ss_pred ------e-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 415 ------N-GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 415 ------~-~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
. .+..+...++|+|++++|++++.||.+++|++..
T Consensus 295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 1 1122346799999999999999999999999754
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-35 Score=283.70 Aligned_cols=263 Identities=10% Similarity=0.061 Sum_probs=204.9
Q ss_pred EECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 149 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 228 (490)
Q Consensus 149 ~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw 228 (490)
.+.+++.+|+||+.||+|++||+.++.... .+. ...|.++.|+|+ +++|+.|++|++|
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~----------~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT----------TIT---------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE----------EEE---------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE----------EEe---------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 455688999999999999999998765321 111 234777788888 9999999999999
Q ss_pred ECCCce----------eEE-ecCCCCCEEEEEecC--CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC
Q 011224 229 STNGDL----------KCT-LSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 295 (490)
Q Consensus 229 ~~~~~~----------~~~-~~~h~~~V~~l~~~~--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (490)
+..+.. ... ..+|.++|.+++|+| ++++|++|+.|++|++||+++++....+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--------------- 165 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH--------------- 165 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE---------------
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE---------------
Confidence 866432 222 236778999999999 9999999999999999999876542211
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee-eeecc-ccccEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV-HDLRE-HSKEIYTI 373 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~v 373 (490)
...|...|.+++|+|++.+|++|+.||.|+|||+++++.+ ..+.. |...|.++
T Consensus 166 -------------------------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l 220 (343)
T 3lrv_A 166 -------------------------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV 220 (343)
T ss_dssp -------------------------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE
T ss_pred -------------------------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE
Confidence 1124457999999999999999999999999999999887 77887 99999999
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC---CCCCEE--EEEECCCCCEEEEEeC-CCcEEEEEc
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG---HREPVY--SLAFSPTGEYLASGSL-DKSMHIWSL 447 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---h~~~v~--~l~~spdg~~l~s~s~-dg~i~iw~~ 447 (490)
+|+|++. +|++++ |+.|++||+++++.+..+.. |...+. +++|+|+|++|++++. |+.|+||++
T Consensus 221 ~fs~~g~---------~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 221 KFADNGY---------WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp EECTTSS---------EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEeCCCC---------EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence 9999986 788888 55999999998876554443 434444 6999999999999998 999999999
Q ss_pred CCCeEEEEEecCCCEEEEEECC---CCCEEEEEECCCcEEEE
Q 011224 448 KEGKIVKTYTGNGGIFEVCWNK---EGDKIAACFANHTVCVL 486 (490)
Q Consensus 448 ~~~~~~~~~~~~~~v~~~~~~~---~g~~la~~~~d~~v~v~ 486 (490)
.++...... ..+..++|+| +++.|++++.|+.+.++
T Consensus 291 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 291 DKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp CTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred cccccceEe---cCceeEecCccccccceeEEEecCCceEEE
Confidence 765432222 3467788988 88899999999988776
No 112
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.1e-34 Score=280.37 Aligned_cols=266 Identities=20% Similarity=0.329 Sum_probs=210.4
Q ss_pred cccceeEEEECCC----CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-CCCE
Q 011224 141 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTL 215 (490)
Q Consensus 141 H~~~V~~~~~sp~----~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-~~~~ 215 (490)
|...|++++|+|+ +.+|++|+.||.|++||+.++.. +..+ ..|...|.+++|+| ++.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------------~~~~----~~~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-------------IKHY----VGHGNAINELKFHPRDPNL 130 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-------------EEEE----ESCCSCEEEEEECSSCTTE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-------------eeee----cCCCCcEEEEEECCCCCCE
Confidence 6688999999999 67999999999999999876531 1122 24578899999999 9999
Q ss_pred EEEEeCCCeEEEEECCCc-eeEEe---cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 216 LATGSYDGQARIWSTNGD-LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~~-~~~~~---~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
|++|+.||.|++|+.... ....+ ..|...|++++|+|++++|++++.|+.|++||+++++....+.... .
T Consensus 131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~ 204 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY------D 204 (366)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH------T
T ss_pred EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE------E
Confidence 999999999999998754 44455 6899999999999999999999999999999998876543332110 0
Q ss_pred ccCCc-eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce-----------
Q 011224 292 WRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----------- 359 (490)
Q Consensus 292 ~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------- 359 (490)
+..+. .+.... .. ........+.+|...|.+++|+ +++|++++.||.|++||+.+...
T Consensus 205 ~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 205 YNPNKTNRPFIS----QK----IHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp CCGGGCSSCCCC----EE----ECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred ecCCCCcccccc----ee----eccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 00000 000000 00 0112234556799999999998 77999999999999999987644
Q ss_pred ---eeeeccccccEEEEEEcCC--CCCCCCCCCcEEEEEEECCCcEEEEeCCCCe----EEEEeeCC--CCCEEEEEECC
Q 011224 360 ---VHDLREHSKEIYTIRWSPT--GSGTNNPNQQLILASASFDSTVKLWDVELGK----LLYSLNGH--REPVYSLAFSP 428 (490)
Q Consensus 360 ---~~~~~~~~~~i~~v~~~p~--g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~----~~~~~~~h--~~~v~~l~~sp 428 (490)
+..+..|...+.+++|+|+ +. +|++|+.||.|++||+.+++ ....+.+| ..+|++++|+|
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~---------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQK---------MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSS---------EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred hheeccccccCCcEEEEEEcCCCCCc---------EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 6667778888999999998 65 89999999999999999875 45577777 78999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 011224 429 TGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~ 448 (490)
++++|++|+.||.|++||+.
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC-
T ss_pred CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999999985
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=9.9e-33 Score=273.40 Aligned_cols=277 Identities=13% Similarity=0.100 Sum_probs=237.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeE-----EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcc
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKC-----TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~-----~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~ 275 (490)
..+.+++|+|++.++++++.++.|++|+.... ... .+.+|.+.|.+++|+|++..+++++.|++|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 34668999998888888888999999998753 333 345788999999999999999999999999999999999
Q ss_pred eeEeeeeeccCeEEEEccCCc--eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe--------C
Q 011224 276 WKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--------D 345 (490)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--------~ 345 (490)
....+..+...+..+.|.++. .+++++.++.|++|++..+..+..+..+ ..+.+++|+|+++++++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccC
Confidence 888888888888888886543 4456668999999999988887777654 4589999999999999888 5
Q ss_pred CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEE
Q 011224 346 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 425 (490)
Q Consensus 346 dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 425 (490)
||.|++||+.+++.+..+ .+...+..++|+|++. .++++++.|+.|++||+.+++.+..+. +...+.+++
T Consensus 282 dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~--------~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~ 351 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN--------KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA 351 (433)
T ss_dssp CEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred CCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC--------EEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence 899999999988776654 4556788999999875 367788999999999999999888876 667899999
Q ss_pred ECCCCCEEEEEeC---------------CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEEC-CCcEEEEEee
Q 011224 426 FSPTGEYLASGSL---------------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFA-NHTVCVLDFR 489 (490)
Q Consensus 426 ~spdg~~l~s~s~---------------dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~-d~~v~v~~~~ 489 (490)
|+|+|++|++++. ||.|++||+.+++.+..+.....+.+++|+|+|++|++++. |++|.||++.
T Consensus 352 ~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 352 LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 9999999988876 57999999999999998888778999999999999988775 9999999975
No 114
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=8.8e-34 Score=280.85 Aligned_cols=246 Identities=24% Similarity=0.440 Sum_probs=214.3
Q ss_pred EEecCCCCCEEEEEecCC-CCEEEEEeCCCeEEEEEccC----------cceeEeeeeeccCeEEEEccCC-c-eEEEEc
Q 011224 236 CTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKT----------EEWKQQFEFHSGPTLDVDWRNN-V-SFATSS 302 (490)
Q Consensus 236 ~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 302 (490)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ ......+..|...+.++.|.+. . .+++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345679999999999997 67899999999999999986 5667778889999999999754 3 788999
Q ss_pred CCCeEEEEEcCCCc-------ceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCC---ceeeeeccccccEE
Q 011224 303 TDNMIYVCKIGENR-------PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD---KYVHDLREHSKEIY 371 (490)
Q Consensus 303 ~d~~i~~~~~~~~~-------~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~ 371 (490)
.|+.|++|++.... +...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 99999999998732 1456779999999999999 6789999999999999999987 56777888999999
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEEEeeCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEEcCC
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iw~~~~ 449 (490)
+++|+|++. .+|++|+.||.|++||+++ ...+..+.+|...|++|+|+|++. +|++++.|+.|+||++..
T Consensus 282 ~i~~~p~~~--------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSE--------FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCT--------TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCCC--------CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 999999875 3789999999999999997 567888999999999999999995 689999999999999987
Q ss_pred --------------CeEEEEEecCC-CEEEEEECCCCC-EEEEEECCCcEEEEEee
Q 011224 450 --------------GKIVKTYTGNG-GIFEVCWNKEGD-KIAACFANHTVCVLDFR 489 (490)
Q Consensus 450 --------------~~~~~~~~~~~-~v~~~~~~~~g~-~la~~~~d~~v~v~~~~ 489 (490)
..++..+.++. .|.+++|+|++. +|++++.|+.|.||+++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 25666666554 599999999999 99999999999999985
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-34 Score=304.27 Aligned_cols=253 Identities=25% Similarity=0.441 Sum_probs=209.1
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC---ceeEEecCCCCCEEEEEecCC--CCEEEEEeCCCeEEEEEcc
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~---~~~~~~~~h~~~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~ 272 (490)
.+|...|++++|+|++++|++|+.||.|+||+..+ .....+.+|.++|++++|+|+ +++|++|+.||+|++||+.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~ 85 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE 85 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC
Confidence 35678999999999999999999999999999753 345678899999999999988 8999999999999999987
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC--CCEEEEEeCCCeEE
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAK 350 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~dg~i~ 350 (490)
++.+. .+..+.+|...|.+++|+|+ ++++++|+.||.|+
T Consensus 86 ~~~~~---------------------------------------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 126 (753)
T 3jro_A 86 NGRWS---------------------------------------QIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126 (753)
T ss_dssp TTEEE---------------------------------------EEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred CCccc---------------------------------------ccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence 75421 22345678999999999999 99999999999999
Q ss_pred EEecCCCc--eeeeeccccccEEEEEEcCCCCCCCC----CCCcEEEEEEECCCcEEEEeCCCC----eEEEEeeCCCCC
Q 011224 351 IWNMKQDK--YVHDLREHSKEIYTIRWSPTGSGTNN----PNQQLILASASFDSTVKLWDVELG----KLLYSLNGHREP 420 (490)
Q Consensus 351 iwd~~~~~--~~~~~~~~~~~i~~v~~~p~g~~~~~----~~~~~~l~sgs~dg~i~iwd~~~~----~~~~~~~~h~~~ 420 (490)
+||++++. ....+..|...|.+++|+|....... .....+|++|+.||.|++||++++ ..+..+.+|..+
T Consensus 127 vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 99998873 34456688999999999995210000 001126899999999999999876 566788899999
Q ss_pred EEEEEECCC---CCEEEEEeCCCcEEEEEcCCCeE-----EEEE-ecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 421 VYSLAFSPT---GEYLASGSLDKSMHIWSLKEGKI-----VKTY-TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 421 v~~l~~spd---g~~l~s~s~dg~i~iw~~~~~~~-----~~~~-~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|++++|+|+ +.+|++|+.||.|++|++.++.. +... .....|++++|+|+|++|++|+.||.|+||+++
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 999999999 89999999999999999988631 1111 134568999999999999999999999999975
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2.7e-34 Score=280.93 Aligned_cols=234 Identities=13% Similarity=0.143 Sum_probs=165.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCcee------EEecCCCCCEEEEEecC--------CCCEEEEEeCCCeEEEE
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLK------CTLSKHKGPIFSLKWNK--------KGDYLLTGSCDKTAIVW 269 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~------~~~~~h~~~V~~l~~~~--------~~~~l~s~s~D~~v~iw 269 (490)
+....+++++.+|++|+.|++|+||+...... ..+.+|.+.|++|+|+| ++++|+|||.|++|+||
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 33444556778899999999999999765422 24678999999999998 78899999999999999
Q ss_pred EccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-EEEEEeCCCe
Q 011224 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVT 348 (490)
Q Consensus 270 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~dg~ 348 (490)
|+.++.. +..+.+|...|.+++|+|++. +|++|+.||+
T Consensus 172 d~~~~~~-----------------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 172 RLTDEGP-----------------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp EEETTEE-----------------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ECCCCce-----------------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence 9876532 223446778899999999874 7999999999
Q ss_pred EEEEecCCCceeeee-------------------------ccccccEEEEEEc-CCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 349 AKIWNMKQDKYVHDL-------------------------REHSKEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 349 i~iwd~~~~~~~~~~-------------------------~~~~~~i~~v~~~-p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
|++||+++++..... ..|...+.++.|+ |++. .|++++.|+++++
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~---------~l~s~s~d~~i~v 281 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS---------GILAMCKSGAWLR 281 (393)
T ss_dssp EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC---------EEEEECTTSEEEE
T ss_pred EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC---------EEEEEeCCCCEEE
Confidence 999999876543221 2355667777776 5664 7899999999999
Q ss_pred EeCCCCeEEEEeeCCCCCEEEEEECC--------------------CCCEEEEEeCCCcEEEEEcCCCeEEEEEe-cCCC
Q 011224 403 WDVELGKLLYSLNGHREPVYSLAFSP--------------------TGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGG 461 (490)
Q Consensus 403 wd~~~~~~~~~~~~h~~~v~~l~~sp--------------------dg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~~~ 461 (490)
||+..+.....+..|...+..+.++| ++.++++|+.||+|++||+.+++.+.... +...
T Consensus 282 wd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~ 361 (393)
T 4gq1_A 282 WNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP 361 (393)
T ss_dssp EEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC
T ss_pred EECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc
Confidence 99998877777766665555544443 33467888999999999999988765554 4567
Q ss_pred EEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 462 IFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 462 v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
|.+++|+|||++||+++.+| +.+|.+
T Consensus 362 V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 99999999999999998776 555543
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=8.1e-34 Score=277.57 Aligned_cols=283 Identities=13% Similarity=0.099 Sum_probs=186.6
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC-----
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG----- 211 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~----- 211 (490)
....|...+....+++++.+|++|+.|++|+|||+.++.. ..........+|...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~------------~~~~~~~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI------------ITQHVLGGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEE------------EEEEEECTTTSCSSCEEEEEEEEEECTT
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc------------ceeeeecccCCCCCceEEEEEccccccc
Confidence 3445666777777788889999999999999999876531 11122344567889999999997
Q ss_pred ---CCCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCC-EEEEEeCCCeEEEEEccCcceeEeeeeeccC
Q 011224 212 ---EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 286 (490)
Q Consensus 212 ---~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 286 (490)
++++|+||+.|++|+|||+. +.....+..|..+|.+++|+|++. +|++|+.|++|++||++++........+...
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence 88999999999999999975 445667778999999999999874 7999999999999999987655443322211
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEc-CCCCEEEEEeCCCeEEEEecCCCceeeeecc
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 365 (490)
.... +.-.............+|...+.++.|+ |+++.|++++.|+++++||+..+.....+..
T Consensus 232 ~~~~----------------~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~ 295 (393)
T 4gq1_A 232 KNPW----------------LLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD 295 (393)
T ss_dssp SCCC----------------SEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------
T ss_pred ccce----------------EEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee
Confidence 1000 0000111111122345788899999987 8999999999999999999998887777777
Q ss_pred ccccEEEEEEcCCCCCC-----------CCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEE
Q 011224 366 HSKEIYTIRWSPTGSGT-----------NNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA 434 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~-----------~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 434 (490)
|...+..+.+.|+.... ..+....++++|+.||.|+|||+.++..+..+.+|..+|++|+|||||++||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp --------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEE
T ss_pred ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 77666666666553210 1122446788999999999999999998888888999999999999999999
Q ss_pred EEeCCCcEEEEEcC
Q 011224 435 SGSLDKSMHIWSLK 448 (490)
Q Consensus 435 s~s~dg~i~iw~~~ 448 (490)
+++.+| +.+|.+.
T Consensus 376 ~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 376 IATEGS-VLLTRLM 388 (393)
T ss_dssp EEESSE-EEEEEEG
T ss_pred EEeCCC-eEEEEEe
Confidence 999776 6666543
No 118
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.7e-33 Score=271.64 Aligned_cols=243 Identities=19% Similarity=0.383 Sum_probs=206.4
Q ss_pred eEEEEEcCCCCEE-EEEeCCCeEEEEECCCc-----eeEEecCCCCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCcce
Q 011224 204 VTTLDWNGEGTLL-ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 204 V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~-----~~~~~~~h~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~ 276 (490)
...++++|+...+ ++++.||.|+||+.... ....+.+|.++|++++|+| ++++|++|+.||+|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 4457888876544 45789999999997542 3345788999999999999 899999999999999999987642
Q ss_pred eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecC
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~ 355 (490)
... ...++..+.+|...|.+++|+|++ .+|++|+.||.|++||+.
T Consensus 117 ~~~----------------------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 117 VLP----------------------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp SSC----------------------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred ccc----------------------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence 210 113456778999999999999998 699999999999999999
Q ss_pred CCceeeee--ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCC-EEEEEECCCCC
Q 011224 356 QDKYVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREP-VYSLAFSPTGE 431 (490)
Q Consensus 356 ~~~~~~~~--~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~-v~~l~~spdg~ 431 (490)
+++.+..+ ..|...|.+++|+|++. +|++++.||.|++||+++++.+..+ .+|... +.+++|+|++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 163 TGAAVLTLGPDVHPDTIYSVDWSRDGA---------LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp TTEEEEEECTTTCCSCEEEEEECTTSS---------CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred CCCccEEEecCCCCCceEEEEECCCCC---------EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence 99999888 78999999999999886 6899999999999999999999998 788776 89999999999
Q ss_pred EEEEE---eCCCcEEEEEcCCCeE---EEEEecCCCEEEEEECCCCCEEEEE-ECCCcEEEEEee
Q 011224 432 YLASG---SLDKSMHIWSLKEGKI---VKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 432 ~l~s~---s~dg~i~iw~~~~~~~---~~~~~~~~~v~~~~~~~~g~~la~~-~~d~~v~v~~~~ 489 (490)
+|++| +.|+.|++||+.+++. ...+.....+..++|+|+|++|+++ +.|+.|++||++
T Consensus 234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 99999 7999999999988754 2333445679999999999999754 579999999986
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-34 Score=279.44 Aligned_cols=257 Identities=14% Similarity=0.088 Sum_probs=210.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
...|.+++|+|||+++||++.|++|+ +. .....+.+|...|++++|+|+| .++++.+|+.+..... .+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~--~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~-~~ 82 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QP--KYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL-NS 82 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EE--CCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS-TT
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cc--cccceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe-ec
Confidence 46799999999999999999999999 53 3334557999999999999998 5666666665433222 11
Q ss_pred eeeccCeEEEEccCC-ceEEEEcCCCeEEEEEcCCCcceeEecCCCC-----CeeEEEEcCCCCEEEEEeCCCeEEEEec
Q 011224 281 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNM 354 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~l~s~~~dg~i~iwd~ 354 (490)
.+...+.++.|.++ ..+++++.|+.+++|+... .+..+. |.. .|.+++|||||++||+|+.||+|+|||+
T Consensus 83 -~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 -QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp -SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred -CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 33677999999754 5689999999999999544 555666 665 4999999999999999999999999999
Q ss_pred CCCce-------eeee----ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE---EEEe-eCCCC
Q 011224 355 KQDKY-------VHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSL-NGHRE 419 (490)
Q Consensus 355 ~~~~~-------~~~~----~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~-~~h~~ 419 (490)
.++.. +.++ .+|...|.+++|+|+| +++++.|++|++||+..+.. ..++ .+|..
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~ 227 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRR 227 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSS
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc-----------EEEEeCCCeEEEEECCCCccccceeeecccccC
Confidence 98763 5665 5677899999999974 67889999999999987763 3566 47889
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE-ecCCCEEEEEE--CCCCCEEEEEECCCcEEEEEe
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY-TGNGGIFEVCW--NKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~-~~~~~v~~~~~--~~~g~~la~~~~d~~v~v~~~ 488 (490)
.|.+++|+ |++||+++ +++|++|++.+++..... .+...+++++| +|+|..|++++.+|+ +||.+
T Consensus 228 ~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 228 KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 99999999 68999998 699999999988874333 33456999999 999999999999999 99975
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=9.2e-32 Score=248.85 Aligned_cols=288 Identities=14% Similarity=0.098 Sum_probs=207.3
Q ss_pred eeEEEECCCCC---EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 145 VCACAWSPAGS---LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 145 V~~~~~sp~~~---~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
|.++.|-.-|- -++++++ ..|++|+..++. ....+... ..+..+|..+.+.||..-|+....
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~----------~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~ 106 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAW----------QWEKLYTW----HFAEVPVLQIVPVPDVYNLVCVAL 106 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSS----------BEEEEEEE----ECCSSCEEEECCCTTCCSCEEEEE
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCc----------cceeeEEE----eccCceeEEEEEcCcccceeeeee
Confidence 56676755443 5677765 689999987642 11222222 234668999999997543322111
Q ss_pred CCeEEEEECCCceeEEecCCCCCEEEEEecCC----CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 222 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK----GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
-.-+...|.+|+|+|+ +.++++++.+ +++|++.+++
T Consensus 107 ----------------~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~---------------------- 146 (356)
T 2w18_A 107 ----------------GNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRR---------------------- 146 (356)
T ss_dssp ----------------CSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTE----------------------
T ss_pred ----------------ccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCc----------------------
Confidence 1125568899999999 8899998854 7889876543
Q ss_pred EEEEc---CCCeEEEEEcCC-CcceeEecCCCCCeeEEEEcC---CCCEEEEEeCCCeEEEEecCCCceeeeecccc---
Q 011224 298 FATSS---TDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDP---TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS--- 367 (490)
Q Consensus 298 ~~~~~---~d~~i~~~~~~~-~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--- 367 (490)
++.++ .|+.|++|++.+ ++.+..+.+|...+..++|+| ++.+|++|+.|++|+|||++++++++++..|.
T Consensus 147 lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v 226 (356)
T 2w18_A 147 LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ 226 (356)
T ss_dssp EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence 23232 488999999954 677778889999999999999 78999999999999999999999999997654
Q ss_pred ccEEEEEEcCCCCCC---CCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-----eCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 368 KEIYTIRWSPTGSGT---NNPNQQLILASASFDSTVKLWDVELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~---~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-----~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
..+.+++|+|+|... .++.....+++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++|+|+.|
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~D 304 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTS 304 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETT
T ss_pred eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCC
Confidence 356778999988521 00111113588999999999999999987765 4776665555554 8899999999
Q ss_pred CcEEEEEcCCCeEEEEEecCC-CE-EEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 440 KSMHIWSLKEGKIVKTYTGNG-GI-FEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~~~~-~v-~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++|+|||+.+|+++.++.++. .+ ..++|+|+|++||+|+.|++|+|||++
T Consensus 305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 999999999999999998654 34 468999999999999999999999974
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.8e-30 Score=251.24 Aligned_cols=273 Identities=12% Similarity=0.135 Sum_probs=219.5
Q ss_pred CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEECCCc
Q 011224 155 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNGD 233 (490)
Q Consensus 155 ~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~~ 233 (490)
.++++++.|+.|++||+.+++. +..+.. ...+.+++|+|+++++ ++++.|+.|++|+....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~-------------~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~ 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV-------------TATIPV-----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-------------EEEEEC-----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEEcCCCCEEEEEECCCCeE-------------EEEeec-----CCCcceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence 4678899999999999876531 112221 2458999999999976 67779999999998654
Q ss_pred -eeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc--eEEEEcCCCeEEE
Q 011224 234 -LKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFATSSTDNMIYV 309 (490)
Q Consensus 234 -~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~ 309 (490)
....+..+. .+.+++|+|++++|+ +++.++.|++||+.+++....+..+ ..+..+.|.++. .+++++.++.|++
T Consensus 65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 444554444 899999999999875 5556799999999999887776654 356778886543 3468888999999
Q ss_pred EEcCCCcceeEecCCCCCeeEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCc
Q 011224 310 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 388 (490)
Q Consensus 310 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~ 388 (490)
|++.+++.+..+..|. .+.+++|+|+++++ ++++.++.|++||+.+++.+..+. +...+.+++|+|++.
T Consensus 143 ~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~-------- 212 (391)
T 1l0q_A 143 INTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT-------- 212 (391)
T ss_dssp EETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS--------
T ss_pred EECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCC--------
Confidence 9999988888877654 56899999999887 678889999999999988776665 456789999999986
Q ss_pred EEEEEEE---CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEEEEecC
Q 011224 389 LILASAS---FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGN 459 (490)
Q Consensus 389 ~~l~sgs---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~ 459 (490)
+|++++ .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++++..+..+
T Consensus 213 -~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~ 285 (391)
T 1l0q_A 213 -KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVG 285 (391)
T ss_dssp -EEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred -EEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECC
Confidence 455555 79999999999999998888765 47999999999987 67788999999999999998887654
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-33 Score=267.05 Aligned_cols=235 Identities=9% Similarity=0.053 Sum_probs=193.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccC
Q 011224 208 DWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 286 (490)
Q Consensus 208 ~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~ 286 (490)
.+.+++.+|++|+.||.|++|+... .....+. ...|.++.|+|. +++|+.|++|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence 3456788999999999999999764 3344443 567788889988 99999999999998754
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
.+.+|+......+..+. +|.+.|.+++|+| ++++|++|+.||+|++||+.+++.+..+
T Consensus 105 -------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 165 (343)
T 3lrv_A 105 -------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH 165 (343)
T ss_dssp -------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE
T ss_pred -------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 24556666666555544 7788999999999 9999999999999999999999887655
Q ss_pred cc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE-EEeeC-CCCCEEEEEECCCCCEEEEEeCCC
Q 011224 364 RE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNG-HREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 364 ~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~-~~~~~-h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
.. +...+.+++|+|++. +|++|+.||.|++||+++++.+ ..+.+ |..+|++|+|+|+|.+|++++ |+
T Consensus 166 ~~~~~~~i~~~~~~pdg~---------~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~ 235 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHKDSL---------LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ 235 (343)
T ss_dssp CCCSSCCCCEEEECTTSC---------EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred ecCCCCceEEEEECCCCC---------EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence 33 455799999999986 8999999999999999999887 78888 999999999999999999999 55
Q ss_pred cEEEEEcCCCeEEEEEec---C-CCE--EEEEECCCCCEEEEEEC-CCcEEEEEee
Q 011224 441 SMHIWSLKEGKIVKTYTG---N-GGI--FEVCWNKEGDKIAACFA-NHTVCVLDFR 489 (490)
Q Consensus 441 ~i~iw~~~~~~~~~~~~~---~-~~v--~~~~~~~~g~~la~~~~-d~~v~v~~~~ 489 (490)
.|++||+++++.+..+.. + ..+ .+++|+|+|++|++++. |+.|+||++.
T Consensus 236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 999999998876543322 1 122 46999999999999998 9999999874
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-31 Score=263.90 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=199.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-c---eeEEec--------------------------------------
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG-D---LKCTLS-------------------------------------- 239 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~---~~~~~~-------------------------------------- 239 (490)
.++.+++|+++|++|+++ .++.|++|++.. . ....+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999966655 578999999643 3 222222
Q ss_pred ----------------CCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEcc--CcceeEeeeeeccCeEEEEccCCceEEE
Q 011224 240 ----------------KHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDWRNNVSFAT 300 (490)
Q Consensus 240 ----------------~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (490)
.|.+.|++++|+|++++| ++|+.|++|++||+. ++.....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------ 145 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------ 145 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------
Confidence 344579999999999996 899999999999987 5544332211
Q ss_pred EcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceee----eeccccccEEEEEEc
Q 011224 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----DLREHSKEIYTIRWS 376 (490)
Q Consensus 301 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~v~~~ 376 (490)
..|...|++++|+|++++|++|+.||.|++|++.++.... .+..|...|.+++|+
T Consensus 146 ---------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 204 (450)
T 2vdu_B 146 ---------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI 204 (450)
T ss_dssp ---------------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE
T ss_pred ---------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEc
Confidence 1356789999999999999999999999999998876554 777899999999999
Q ss_pred CC---CCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEE-eeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE
Q 011224 377 PT---GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI 452 (490)
Q Consensus 377 p~---g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~ 452 (490)
|+ +. +|++|+.|+.|++||+.+++.+.. +.+|...|++++|+ ++++|++|+.|++|++||+.++++
T Consensus 205 p~~~~~~---------~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 205 KDSDGHQ---------FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp ECTTSCE---------EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE
T ss_pred CCCCCCc---------EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE
Confidence 98 64 899999999999999999988877 66899999999999 999999999999999999999998
Q ss_pred EEEEec--------------------------CCCEEEEEECCCCCEEEEEE-CCCcEEEEEe
Q 011224 453 VKTYTG--------------------------NGGIFEVCWNKEGDKIAACF-ANHTVCVLDF 488 (490)
Q Consensus 453 ~~~~~~--------------------------~~~v~~~~~~~~g~~la~~~-~d~~v~v~~~ 488 (490)
+..+.. ...|.+++|+|+|++|++++ .++.|.||++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 275 LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 887752 23589999999999999998 8999999998
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=6.5e-30 Score=249.60 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=221.2
Q ss_pred CEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEccCcceeEeeeeeccCeEEEE
Q 011224 214 TLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 291 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 291 (490)
.++++++.|+.|++|+.... ....+..|. .+.+++|+|++.++ ++++.|++|++||+.+++....+..+. .+..+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 46788999999999998754 445566554 58999999999986 677799999999999999888777655 778888
Q ss_pred ccCCc--eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEE-EEEeCCCeEEEEecCCCceeeeeccccc
Q 011224 292 WRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSK 368 (490)
Q Consensus 292 ~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 368 (490)
|.++. .+++++.++.|++|++..++.+..+..| ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 86543 3456667899999999998888777654 468999999999977 78888999999999999888777655 4
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEe---CCCcEEEE
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS---LDKSMHIW 445 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s---~dg~i~iw 445 (490)
.+..++|+|++. .++++++.++.|++||+++++.+..+. +...+.+++|+|+|++|++++ .++.|++|
T Consensus 159 ~~~~~~~~~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 159 SPKGIAVTPDGT--------KVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp SEEEEEECTTSS--------EEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred CcceEEECCCCC--------EEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 568999999885 355788889999999999998887776 456789999999999999887 68999999
Q ss_pred EcCCCeEEEEEecCCCEEEEEECCCCCEE-EEEECCCcEEEEEee
Q 011224 446 SLKEGKIVKTYTGNGGIFEVCWNKEGDKI-AACFANHTVCVLDFR 489 (490)
Q Consensus 446 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~l-a~~~~d~~v~v~~~~ 489 (490)
|+.+++.+..+..+..+.+++|+|+|++| ++++.|+.|++||++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 99999999888887789999999999977 566889999999974
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=3.5e-31 Score=245.00 Aligned_cols=187 Identities=17% Similarity=0.193 Sum_probs=139.5
Q ss_pred CCCEEEEEe--CCCeEEEEECC--CceeEEecCCCCCEEEEEecC---CCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 212 EGTLLATGS--YDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 212 ~~~~l~sg~--~dg~i~iw~~~--~~~~~~~~~h~~~V~~l~~~~---~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+++++.+++ .|+.|++|++. ++....+.+|...++.++|++ ++.+|++|+.|++|+|||+.+++++.++..|.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 444555533 58888888873 455667778999999999999 67899999999999999999888766654321
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEE------------EEEeCCCeEEEE
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL------------ASCSDDVTAKIW 352 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l------------~s~~~dg~i~iw 352 (490)
. +...+.+++|+|+|.++ ++|+.|++|++|
T Consensus 224 ~--------------------------------------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 224 S--------------------------------------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp -----------------------------------------CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred c--------------------------------------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 1 11245666777777665 678899999999
Q ss_pred ecCCCceeeee-----ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEE-EEEE
Q 011224 353 NMKQDKYVHDL-----REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAF 426 (490)
Q Consensus 353 d~~~~~~~~~~-----~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~ 426 (490)
|..+++.+..+ .+|...+.+..++ +. ++++|+.|++|+|||+.+++++.++.+|...+. .++|
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~---------~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf 334 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH---------CAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW 334 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT---------EEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEccccC--CC---------EEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE
Confidence 99999877654 2444444433333 22 689999999999999999999999999987655 5899
Q ss_pred CCCCCEEEEEeCCCcEEEEEc
Q 011224 427 SPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~ 447 (490)
||||++|++|+.|++|+||++
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999985
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.7e-30 Score=252.60 Aligned_cols=286 Identities=13% Similarity=0.099 Sum_probs=228.2
Q ss_pred eccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEee-ecccccCCCCeEEEEEcCCCCE
Q 011224 137 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTL 215 (490)
Q Consensus 137 ~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~s~~~~~ 215 (490)
.+..| ..+.+++|+|++.++++++.|+.|++||+.++... ... ......|...|.+++|++++.+
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV-------------RLSPPEKYKKKLGFVETISIPEHNEL 183 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE-------------EECCCHHHHTTCCEEEEEEEGGGTEE
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe-------------eecCcccccccCCceeEEEEcCCCEE
Confidence 33334 45679999998788888889999999998876421 111 1122356678999999999999
Q ss_pred EEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 216 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
+++++.|+.|++|+... .....+..|...+.+++|+|++.+++ +++.|+.|++||+++++....+..+. .+..+.|.
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 262 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLS 262 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEEC
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEc
Confidence 99999999999999865 55667778999999999999999885 55589999999999988877666543 36777776
Q ss_pred CCc-eEEEEc--------CCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCE-EEEEeCCCeEEEEecCCCceeeee
Q 011224 294 NNV-SFATSS--------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 294 ~~~-~~~~~~--------~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
++. .+++++ .|+.|++|++..++.+..+ .|...+.+++|+|+++. +++++.|+.|++||+.+++.+..+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 543 555554 4889999999888766554 45568899999999974 577789999999999998887766
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC---------------CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASF---------------DSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~---------------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
. +...+.+++|+|++. +|++++. ||.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 342 ~-~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 410 (433)
T 3bws_A 342 P-VFDKPNTIALSPDGK---------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP 410 (433)
T ss_dssp E-CSSSEEEEEECTTSS---------EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT
T ss_pred c-CCCCCCeEEEcCCCC---------EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC
Confidence 5 667789999999986 4555554 579999999999999888864 5789999999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCC
Q 011224 429 TGEYLASGSL-DKSMHIWSLKE 449 (490)
Q Consensus 429 dg~~l~s~s~-dg~i~iw~~~~ 449 (490)
+|++|++++. |+.|++|++..
T Consensus 411 dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 411 DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCEEEEEETTTTEEEEEEETT
T ss_pred CCCEEEEEECCCCeEEEEEecC
Confidence 9999988775 99999999864
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.98 E-value=2.5e-29 Score=254.86 Aligned_cols=312 Identities=12% Similarity=0.113 Sum_probs=242.5
Q ss_pred EECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 149 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 228 (490)
Q Consensus 149 ~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw 228 (490)
+|+|++.++++++.|++|.+||..+++. +..+.. + ..+.+++|+|+|++|++++.|+.|++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-------------~~~i~~---g--~~~~~v~~spdg~~l~v~~~d~~V~v~ 205 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-------------VKVIDT---G--YAVHISRMSASGRYLLVIGRDARIDMI 205 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-------------EEEEEC---S--TTEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-------------EEEEec---C--cccceEEECCCCCEEEEECCCCeEEEE
Confidence 3899999999999999999999877642 122221 1 128899999999999999999999999
Q ss_pred EC--CC-ceeEEecCCCCCEEEEEecC----CCCEEEEEe-CCCeEEEEEccCcceeEeeeee----------cc-CeEE
Q 011224 229 ST--NG-DLKCTLSKHKGPIFSLKWNK----KGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFH----------SG-PTLD 289 (490)
Q Consensus 229 ~~--~~-~~~~~~~~h~~~V~~l~~~~----~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~----------~~-~~~~ 289 (490)
|+ .. .....+. +...+..++|+| +|++|++++ .+++|.+||..+++++..+..+ .. .+..
T Consensus 206 D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~ 284 (543)
T 1nir_A 206 DLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 284 (543)
T ss_dssp ETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred ECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence 99 43 4444555 445679999999 999999887 4899999999999988877642 22 4555
Q ss_pred EEccC--CceEEEEcCCCeEEEEEcCCCccee--EecCCCCCeeEEEEcCCCCEEEEE-eCCCeEEEEecCCCceeeeec
Q 011224 290 VDWRN--NVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 290 ~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~ 364 (490)
+.+.. ...+++...++.|.+|++.....+. .+ .+...+..++|+|+|++|+++ ..+++|.+||+.+++++..+.
T Consensus 285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 65543 4456677889999999998765443 33 356678899999999976655 568999999999999887765
Q ss_pred c----ccccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCCC-------CeEEEEeeCCCCCEEEEEECCCCCE
Q 011224 365 E----HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEY 432 (490)
Q Consensus 365 ~----~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~spdg~~ 432 (490)
. |......+ ++|++. .+++++. .|++|.+||+.+ .+++.++.+|...+..|+|||+|++
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g--------~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~ 434 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYG--------PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH 434 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCE
T ss_pred cCCCCCCCCCccc-CCCCCc--------cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCc
Confidence 3 44333333 356532 3677775 689999999998 8999999999888899999999999
Q ss_pred EEEEe-------CCCcEEEEEcCCCeEE-EEE---------ecCCCEEEEEECCCCCEEEEEE-----CCCcEEEEEee
Q 011224 433 LASGS-------LDKSMHIWSLKEGKIV-KTY---------TGNGGIFEVCWNKEGDKIAACF-----ANHTVCVLDFR 489 (490)
Q Consensus 433 l~s~s-------~dg~i~iw~~~~~~~~-~~~---------~~~~~v~~~~~~~~g~~la~~~-----~d~~v~v~~~~ 489 (490)
|++++ .+++|.+||+.+++.. ..+ .+...+..++|+|+|+.|+++. .++.|.|||.+
T Consensus 435 l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 435 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred EEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 99987 2779999999998876 554 2234699999999999888764 36899999964
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.5e-28 Score=260.35 Aligned_cols=334 Identities=15% Similarity=0.144 Sum_probs=239.7
Q ss_pred ccceeEEEECCCCCEEEEEEC-CC-----cEEEEecCCCCCCCCCCCCCce----eEEE--Eeeecccc-cCCCCeEEEE
Q 011224 142 TSEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLN----VLVL--KHVKGRTN-EKSKDVTTLD 208 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~-D~-----~i~~Wd~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~-~~~~~V~~~~ 208 (490)
...|.+++|||||++|++++. |+ .|++||+.++............ .+.. ........ .....|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 446899999999999999998 88 8999999876421100000000 0000 00000000 0002378899
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCc---eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~~---~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 285 (490)
|||||++|++++. +.|++|++.+. ....+..|...+..++|+|+|++|+.++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999887 99999998876 6667788889999999999999999887 56999999998876554433322
Q ss_pred C----------------eEEEEccCC-ceEEEEcCCC---------------------------------eEEEEEcCC-
Q 011224 286 P----------------TLDVDWRNN-VSFATSSTDN---------------------------------MIYVCKIGE- 314 (490)
Q Consensus 286 ~----------------~~~~~~~~~-~~~~~~~~d~---------------------------------~i~~~~~~~- 314 (490)
. +..+.|.++ ..++.++.++ .|++|++.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 1 245677654 3455554433 788889887
Q ss_pred CcceeEec--CCCCCeeEEEEcCCCCEEEEEeC-----CCeEEEEecCCCceeeeeccccc----cEEEEEEcCCCCCCC
Q 011224 315 NRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTN 383 (490)
Q Consensus 315 ~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~----~i~~v~~~p~g~~~~ 383 (490)
+....... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|+|+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~--- 349 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS--- 349 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC---
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe---
Confidence 66554433 47778999999 99999887654 56899999999887666554433 345789999985
Q ss_pred CCCCcEEEEEEECCCcEEEEeCC-CCeEEEEeeCCCCCEEEE-EECCCCCEEE-EEeCCC--cEEEEEcCC-CeEEEEEe
Q 011224 384 NPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSL-AFSPTGEYLA-SGSLDK--SMHIWSLKE-GKIVKTYT 457 (490)
Q Consensus 384 ~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l-~~spdg~~l~-s~s~dg--~i~iw~~~~-~~~~~~~~ 457 (490)
++++++.||.++||.+. .+. ...+..|...|..+ +|+|+|+.|+ +++.++ .++||++.. +..+..+.
T Consensus 350 ------~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 350 ------ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp ------EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred ------EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 78888999988888765 345 77788888889887 5999998775 455555 899999864 66566666
Q ss_pred cCCCEEEEEECCCCCEEEEEECC----CcEEEEEe
Q 011224 458 GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 488 (490)
Q Consensus 458 ~~~~v~~~~~~~~g~~la~~~~d----~~v~v~~~ 488 (490)
....+..++|+|||++|+....+ ..+.+++.
T Consensus 423 ~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 423 KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 66678999999999988876443 35677663
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=1.2e-28 Score=242.45 Aligned_cols=301 Identities=15% Similarity=0.153 Sum_probs=226.1
Q ss_pred cccceeEEEECCCCC-EEEEEE----CCC----cEEEEec--CCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE
Q 011224 141 HTSEVCACAWSPAGS-LLASGS----GDS----TARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 209 (490)
Q Consensus 141 H~~~V~~~~~sp~~~-~l~sgs----~D~----~i~~Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 209 (490)
+...|+..+|++.|. ++++|+ .|| .|+|||+ .+++.. ....+.+ +...+..+++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~-----------~~~~~~~----~~~~~~~~~~ 125 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVL-----------AQNSYKV----NKQWLRYAGH 125 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEE-----------EEEEEEE----CGGGHHHHHH
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEE-----------eeeEEEc----ChhHHHHHHH
Confidence 345788888999875 666887 567 8999999 765421 0011111 2233444444
Q ss_pred cC--------------CCCEEEEEeCC------CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCC---eE
Q 011224 210 NG--------------EGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TA 266 (490)
Q Consensus 210 s~--------------~~~~l~sg~~d------g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v 266 (490)
++ .+..++.++.+ +.|++||..+.....+.+|...|.+++|+|+|++|++++.++ .|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i 205 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSAL 205 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEE
Confidence 42 25566666554 799999998877778888999999999999999999999885 99
Q ss_pred EEEEccCcceeEeeeeeccCeEEEEccCCc-eEE-EEcCCC--eEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEE
Q 011224 267 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFA-TSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 342 (490)
Q Consensus 267 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~d~--~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 342 (490)
++||+.+++.. .+..+...+..+.|.++. .++ +++.++ .|++|++.++.. ..+..|...+.+++|+|||++|++
T Consensus 206 ~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 206 VIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp EEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEE
Confidence 99999998765 455566778889997654 344 555544 599999987665 567788889999999999999988
Q ss_pred EeC-CC--eEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC---CcEEEEeCCCCeEEEEeeC
Q 011224 343 CSD-DV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKLLYSLNG 416 (490)
Q Consensus 343 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~ 416 (490)
++. ++ .|.+||+.++.. ..+..+...+.+++|+|+|. +|++++.+ +.|++||+.+++.. .+..
T Consensus 284 ~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~---------~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~ 352 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGK---------FMVMVSSNGGQQHIAKQDLATGGVQ-VLSS 352 (415)
T ss_dssp EECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSS---------EEEEEEECSSCEEEEEEETTTCCEE-ECCC
T ss_pred EECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCC---------EEEEEECcCCceEEEEEECCCCCEE-EecC
Confidence 886 45 677789887764 34455667889999999986 55555543 58999999988764 5665
Q ss_pred CCCCEEEEEECCCCCEEEEEeCCC---cEEEEEcCCCeEEEEEec-CCCEEEEEECCCC
Q 011224 417 HREPVYSLAFSPTGEYLASGSLDK---SMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEG 471 (490)
Q Consensus 417 h~~~v~~l~~spdg~~l~s~s~dg---~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g 471 (490)
+. .+.+++|+|+|++|++++.++ .|++|++..+. ...+.. .+.|.+++|+|.-
T Consensus 353 ~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 353 TF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCC
T ss_pred CC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccc
Confidence 64 899999999999999988877 79999987544 455554 4679999999974
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=7.6e-27 Score=255.90 Aligned_cols=322 Identities=11% Similarity=0.082 Sum_probs=236.7
Q ss_pred CceeeccccccceeEEEECCCCCEEEEEECC------CcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCe--
Q 011224 133 SDVTILEGHTSEVCACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-- 204 (490)
Q Consensus 133 ~~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D------~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-- 204 (490)
.....|.+|...|.+++|||||++||+++.+ ..|++|++.++.. +.+. .+...+
T Consensus 43 g~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~--------------~~lt----~~~~~~~~ 104 (1045)
T 1k32_A 43 GSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--------------KRIT----YFSGKSTG 104 (1045)
T ss_dssp CCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--------------EECC----CCCEEEET
T ss_pred CcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe--------------EEcc----cCCCcccc
Confidence 3456678899999999999999999988653 3799999876531 1111 123345
Q ss_pred -----EEEEEcCCCCEEEEEeCC------CeEEEEECCCcee--------------------------------------
Q 011224 205 -----TTLDWNGEGTLLATGSYD------GQARIWSTNGDLK-------------------------------------- 235 (490)
Q Consensus 205 -----~~~~~s~~~~~l~sg~~d------g~i~iw~~~~~~~-------------------------------------- 235 (490)
..++|+|||+++++++.+ ..|++|+..+...
T Consensus 105 ~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~ 184 (1045)
T 1k32_A 105 RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTR 184 (1045)
T ss_dssp TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTC
T ss_pred cccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCc
Confidence 899999999977887754 3577777543221
Q ss_pred ------------EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC-cceeEeeeeeccCeEEEEccCCc-eEEEE
Q 011224 236 ------------CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNV-SFATS 301 (490)
Q Consensus 236 ------------~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 301 (490)
..+.+|...+.++.|+++ ..+++++.|+++++|.+.. +.....+..+. .+....|.++. .++.+
T Consensus 185 ~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~ 262 (1045)
T 1k32_A 185 GKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS 262 (1045)
T ss_dssp CEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE
T ss_pred CCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE
Confidence 122456777888889887 5667788889999997653 22233333333 23334554433 34444
Q ss_pred cCCCeEEEEEcCCCcceeEecC-----------CCCCeeEEEEc-CCCCEEEEEeCCCeEEEEecCCCceeeeeccccc-
Q 011224 302 STDNMIYVCKIGENRPIKTFAG-----------HQGEVNCVKWD-PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK- 368 (490)
Q Consensus 302 ~~d~~i~~~~~~~~~~~~~~~~-----------h~~~v~~v~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~- 368 (490)
.++.|++|++.. ..+..+.+ |...+.+++|+ |+|++|++++ ++.|.+|++..+.... +..+..
T Consensus 263 -~~~~i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~ 338 (1045)
T 1k32_A 263 -KGGSIYIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRI 338 (1045)
T ss_dssp -ETTEEEEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCE
T ss_pred -eCCEEEEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcc
Confidence 588999999843 33445544 34468999999 9999999888 7899999998776443 555666
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEE-EEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVK-LWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~-iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
.+..++|+ +|. .|++++.++.|. +|++..++.. .+.+|...+..++|||||++||+++.++.|++||+
T Consensus 339 ~~~~~~~s-dg~---------~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~ 407 (1045)
T 1k32_A 339 RYVRRGGD-TKV---------AFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL 407 (1045)
T ss_dssp EEEEECSS-SEE---------EEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEeeeEc-CCC---------eEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEEC
Confidence 78999999 875 577777788888 9999877654 44478888999999999999999999999999999
Q ss_pred CCCeEEEEEec-CCCEEEEEECCCCCEEEEEECCC----------cEEEEEee
Q 011224 448 KEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANH----------TVCVLDFR 489 (490)
Q Consensus 448 ~~~~~~~~~~~-~~~v~~~~~~~~g~~la~~~~d~----------~v~v~~~~ 489 (490)
.++++.....+ .+.+.+++|+|||++||+++.++ .|.+||+.
T Consensus 408 ~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 408 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred CCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 99998777744 44578999999999999887654 89999864
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=1.7e-26 Score=253.05 Aligned_cols=337 Identities=12% Similarity=0.118 Sum_probs=249.8
Q ss_pred ceeeccccccce-------eEEEECCCCCEEEEEECC------CcEEEEecCCCCCCCCCCC------------------
Q 011224 134 DVTILEGHTSEV-------CACAWSPAGSLLASGSGD------STARIWTIADGTSNGGAQN------------------ 182 (490)
Q Consensus 134 ~~~~l~~H~~~V-------~~~~~sp~~~~l~sgs~D------~~i~~Wd~~~~~~~~~~~~------------------ 182 (490)
....|.+|...+ .+++|||||+++++++.+ ..|.+|++.++....-...
T Consensus 91 ~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~ 170 (1045)
T 1k32_A 91 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT 170 (1045)
T ss_dssp EEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESC
T ss_pred CeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccC
Confidence 356678898888 999999999988888755 3577787765532110000
Q ss_pred ------------CCceeEEEEe--eecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC--CceeEEecCCCCCEE
Q 011224 183 ------------GPLNVLVLKH--VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIF 246 (490)
Q Consensus 183 ------------~~~~~~~~~~--~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~--~~~~~~~~~h~~~V~ 246 (490)
....++.... .......|...+.++.|+++ .++++++.++.++||... +.....+..|. .+.
T Consensus 171 ~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 248 (1045)
T 1k32_A 171 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYY 248 (1045)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSC
T ss_pred CCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccc
Confidence 0000000000 00011346778999999998 777788889999999743 44455566665 356
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee-----------eccCeEEEEcc-CCce-EEEEcCCCeEEEEEcC
Q 011224 247 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-----------HSGPTLDVDWR-NNVS-FATSSTDNMIYVCKIG 313 (490)
Q Consensus 247 ~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~-~~~~~~d~~i~~~~~~ 313 (490)
.++|+|+|++|+.+ .++.|++||+....+. .+.. +...+..+.|. ++.. ++.++ ++.+++|+..
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~ 325 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS 325 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence 77999999998887 4899999998554433 3332 23356677887 6543 44444 7899999987
Q ss_pred CCcceeEecCCCC-CeeEEEEcCCCCEEEEEeCCCeEE-EEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEE
Q 011224 314 ENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAK-IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 314 ~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l 391 (490)
..... .+..|.. .+.+++|+ +|+.|++++.++.+. +|++.++.... +..+...+..++|+|+|. +|
T Consensus 326 ~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~---------~l 393 (1045)
T 1k32_A 326 GTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGK---------FA 393 (1045)
T ss_dssp SSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSS---------EE
T ss_pred CCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCC---------EE
Confidence 76543 4667777 89999999 999999999988898 99998776543 446778899999999997 78
Q ss_pred EEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC----------cEEEEEcCCCeEEEEEec-CC
Q 011224 392 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK----------SMHIWSLKEGKIVKTYTG-NG 460 (490)
Q Consensus 392 ~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg----------~i~iw~~~~~~~~~~~~~-~~ 460 (490)
++++.++.|++||+.+++....+.+|...|.+++|||||++|++++.++ .|++||+.+++ +..+.. ..
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~ 472 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS 472 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS
T ss_pred EEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc
Confidence 8999999999999999998888878999999999999999999887654 89999999888 444443 44
Q ss_pred CEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 461 GIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 461 ~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.+..++|+|||++|++++.++...+|+.
T Consensus 473 ~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 473 HDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp BEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ccCCceEcCCCCEEEEEecccCCcCcch
Confidence 5889999999999999988777766653
No 132
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=1.1e-25 Score=237.01 Aligned_cols=321 Identities=14% Similarity=0.164 Sum_probs=225.4
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCC-CCCCCCCceeEEEEeee-------cccccCCCCeEEEEEcCCCCEE
Q 011224 145 VCACAWSPAGSLLASGSGDSTARIWTIADGTSN-GGAQNGPLNVLVLKHVK-------GRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 145 V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~V~~~~~s~~~~~l 216 (490)
+..+.|+ |..+++++.|+ | +||+.+++.. .. +....... .........|.+++|||| .++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~-------l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~ 95 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT-------RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLV 95 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE-------EEEHHHHHTTC-----------CCCEEEEETTT-TEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE-------eechhHhhhhccchhccccccccCceeEEECCC-CeE
Confidence 5667888 66777788888 8 9999877531 10 00000000 000011256999999999 665
Q ss_pred EEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC-----cceeEeeeeeccC-----
Q 011224 217 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-----EEWKQQFEFHSGP----- 286 (490)
Q Consensus 217 ~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~----- 286 (490)
+.+ .++.|++|+..+.....+..+...+.+++|+|+|++|+++ .|+.|++||+.+ ++.......+...
T Consensus 96 ~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 96 VLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 555 4599999999877666667777888999999999999885 689999999998 7765544333332
Q ss_pred ---------eEEEEccCC-ceEEEEc---------------------------------CCCeEEEEEcCCCcceeEec-
Q 011224 287 ---------TLDVDWRNN-VSFATSS---------------------------------TDNMIYVCKIGENRPIKTFA- 322 (490)
Q Consensus 287 ---------~~~~~~~~~-~~~~~~~---------------------------------~d~~i~~~~~~~~~~~~~~~- 322 (490)
+..+.|.++ ..++.++ .+..|++|++.++.......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 356778654 4455554 34679999998876544432
Q ss_pred -CCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEEecCCCceeeeec-c-ccc---cEEEEEEcC--CCCCCCCCCCcE
Q 011224 323 -GHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKYVHDLR-E-HSK---EIYTIRWSP--TGSGTNNPNQQL 389 (490)
Q Consensus 323 -~h~~~v~~v~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~-~-~~~---~i~~v~~~p--~g~~~~~~~~~~ 389 (490)
.|...+.+++|+|||++|++++.++ .|.+||+.+++....+. . +.. .+..++|+| +|.
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~--------- 324 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ--------- 324 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE---------
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE---------
Confidence 4667899999999999999888775 89999999884333332 1 111 235678999 875
Q ss_pred EEEEEECCCcEEEEeCC-CCeEEEEeeCCCCCEEE-EEECCCCCEEEEEe-CCC----cEEEEEcCCCeEEEEEecCCCE
Q 011224 390 ILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYS-LAFSPTGEYLASGS-LDK----SMHIWSLKEGKIVKTYTGNGGI 462 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~s-~dg----~i~iw~~~~~~~~~~~~~~~~v 462 (490)
+|++++.||.++||.+. .+..+..+..|...+.+ ++|+|+|+.|+.++ .++ .|..|++.+++ ...+.....+
T Consensus 325 ~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~ 403 (706)
T 2z3z_A 325 FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGM 403 (706)
T ss_dssp EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSE
T ss_pred EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCce
Confidence 78888899999999886 67777888888888887 79999999876554 444 67777777766 3444455679
Q ss_pred EEEEECCCCCEEEEEECC----CcEEEEEee
Q 011224 463 FEVCWNKEGDKIAACFAN----HTVCVLDFR 489 (490)
Q Consensus 463 ~~~~~~~~g~~la~~~~d----~~v~v~~~~ 489 (490)
.+++|+|+|++|+....+ +.|.+||+.
T Consensus 404 ~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 404 HRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 999999999988876444 459999864
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.1e-24 Score=220.72 Aligned_cols=294 Identities=14% Similarity=0.148 Sum_probs=223.2
Q ss_pred eeecc-ccccceeEEEECCCCCEEEEEECCCcEEEEec--CCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 135 VTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 135 ~~~l~-~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
+.++. +|. +++++|||+|++|++++.|++|++||+ .++. .+..+. ....+..++|+|
T Consensus 172 ~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-------------~~~~i~-----~g~~p~~va~sp 231 (543)
T 1nir_A 172 VKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-------------KVAEIK-----IGIEARSVESSK 231 (543)
T ss_dssp EEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-------------EEEEEE-----CCSEEEEEEECC
T ss_pred EEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-------------EEEEEe-----cCCCcceEEeCC
Confidence 44555 443 899999999999999999999999998 4432 112222 134578999999
Q ss_pred ----CCCEEEEEeC-CCeEEEEECCC-ceeEEecC----------CCC-CEEEEEecCCCCE-EEEEeCCCeEEEEEccC
Q 011224 212 ----EGTLLATGSY-DGQARIWSTNG-DLKCTLSK----------HKG-PIFSLKWNKKGDY-LLTGSCDKTAIVWDVKT 273 (490)
Q Consensus 212 ----~~~~l~sg~~-dg~i~iw~~~~-~~~~~~~~----------h~~-~V~~l~~~~~~~~-l~s~s~D~~v~iwd~~~ 273 (490)
+|+++++++. +++|.|||... .....+.. |.. .+.++.++|++.. +++...+++|.+||+.+
T Consensus 232 ~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 232 FKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred CcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999885 89999999764 33444433 333 6899999997765 56777899999999987
Q ss_pred cceeE--eeeeeccCeEEEEccCCc--eEEEEcCCCeEEEEEcCCCcceeEecC----CCCCeeEEEEcCC-CCEEEEEe
Q 011224 274 EEWKQ--QFEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPT-GSLLASCS 344 (490)
Q Consensus 274 ~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~-~~~l~s~~ 344 (490)
.+... .+. +...+..+.|.++. .++++..++.|.+||..+++.+..+.. |.+....+ ++|+ +.++++++
T Consensus 312 ~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~ 389 (543)
T 1nir_A 312 IDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH 389 (543)
T ss_dssp SSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB
T ss_pred CCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc
Confidence 65443 222 33345566676543 345566789999999999988877764 65544333 4777 66777776
Q ss_pred -CCCeEEEEecCC-------CceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE-------CCCcEEEEeCCCCe
Q 011224 345 -DDVTAKIWNMKQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-------FDSTVKLWDVELGK 409 (490)
Q Consensus 345 -~dg~i~iwd~~~-------~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-------~dg~i~iwd~~~~~ 409 (490)
.|++|.+||+.+ .++++++..|...+..++++|++. .|++++ .+++|.+||+.+++
T Consensus 390 ~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~---------~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 390 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---------HLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC---------EEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC---------cEEEecCCCCCcccCceEEEEECCCCC
Confidence 689999999988 888999998888888999999987 677766 26799999999888
Q ss_pred EE-EEe--------eCCCCCEEEEEECCCCCEEEEEe-----CCCcEEEEEcCCCeEEEEEecC
Q 011224 410 LL-YSL--------NGHREPVYSLAFSPTGEYLASGS-----LDKSMHIWSLKEGKIVKTYTGN 459 (490)
Q Consensus 410 ~~-~~~--------~~h~~~v~~l~~spdg~~l~s~s-----~dg~i~iw~~~~~~~~~~~~~~ 459 (490)
.. ..+ ..+...+..+.|+|+|++|..+. .|+.|.|||..++++++++...
T Consensus 461 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 461 AKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp SCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 76 333 35567899999999999988653 4799999999999999998754
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.8e-25 Score=219.74 Aligned_cols=272 Identities=12% Similarity=0.101 Sum_probs=210.4
Q ss_pred CeEEEEEcCCCC-EEEEEe----CCC----eEEEEEC--CC-cee--EEecCCCCCEEEEEecC--------------CC
Q 011224 203 DVTTLDWNGEGT-LLATGS----YDG----QARIWST--NG-DLK--CTLSKHKGPIFSLKWNK--------------KG 254 (490)
Q Consensus 203 ~V~~~~~s~~~~-~l~sg~----~dg----~i~iw~~--~~-~~~--~~~~~h~~~V~~l~~~~--------------~~ 254 (490)
.|...+|++.|. ++++|+ .+| .++|||+ .. ... ..+.+|...+..+++++ .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 466777888774 566776 467 8999998 54 433 35778888887777764 15
Q ss_pred CEEEEEeCC------CeEEEEEccCcceeEeeeeeccCeEEEEccCC-ceEEEEcCCC---eEEEEEcCCCcceeEecCC
Q 011224 255 DYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDN---MIYVCKIGENRPIKTFAGH 324 (490)
Q Consensus 255 ~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~---~i~~~~~~~~~~~~~~~~h 324 (490)
..++.++.+ ++|++||+... ....+..|...+.++.|.++ ..++.++.++ .|++|++.+++.. .+..|
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~ 221 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF 221 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecC
Confidence 666666654 79999999754 45667778889999999765 4566676664 9999999887764 56778
Q ss_pred CCCeeEEEEcCCCCEEE-EEeCCCe--EEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC-CC--
Q 011224 325 QGEVNCVKWDPTGSLLA-SCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DS-- 398 (490)
Q Consensus 325 ~~~v~~v~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~-dg-- 398 (490)
.+.+.+++|+|||+.|+ +++.++. |.+||+.+++. ..+..+...+.+++|+|+|. .|++++. ++
T Consensus 222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~---------~l~~~s~~~g~~ 291 (415)
T 2hqs_A 222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQ---------NLAFTSDQAGRP 291 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSS---------EEEEEECTTSSC
T ss_pred CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCC---------EEEEEECCCCCc
Confidence 88999999999999877 6766665 99999988765 55667888899999999986 5666665 45
Q ss_pred cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEE
Q 011224 399 TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD---KSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIA 475 (490)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la 475 (490)
.|.+||+.+++. ..+..+...+.+++|||+|++|++++.+ ..|++|++.+++... +..+..+.+++|+|+|++|+
T Consensus 292 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 292 QVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEE
T ss_pred EEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEE
Confidence 677789887764 4556677789999999999999988764 589999999888743 44444789999999999999
Q ss_pred EEECCC---cEEEEEe
Q 011224 476 ACFANH---TVCVLDF 488 (490)
Q Consensus 476 ~~~~d~---~v~v~~~ 488 (490)
+++.++ .|.+||+
T Consensus 370 ~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVST 385 (415)
T ss_dssp EEEEETTEEEEEEEET
T ss_pred EEEcCCCccEEEEEEC
Confidence 888776 6888886
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=7.2e-26 Score=239.04 Aligned_cols=313 Identities=11% Similarity=0.086 Sum_probs=217.2
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC-
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD- 222 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d- 222 (490)
.+.+++|+|||+++++ +.||+|++||+.++... ..+..+ ......|.+++|||||++|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-------------~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~ 82 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-------------VLIEGK-KIESLRAIRYEISPDREYALFSYNVE 82 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-------------EEECTT-TTTTTTCSEEEECTTSSEEEEEESCC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-------------EEeccc-cccccccceEEECCCCCEEEEEecCc
Confidence 3678899999998877 78999999999876421 111111 1111248999999999999999875
Q ss_pred --------CeEEEEECCCceeEEec---CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe----
Q 011224 223 --------GQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT---- 287 (490)
Q Consensus 223 --------g~i~iw~~~~~~~~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~---- 287 (490)
+.+++|++.+.....+. .|...+..++|+|+|++|+.++. +.|++||+.+++.......+...+
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred cceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECc
Confidence 78889998765444343 34455889999999999998886 799999999887766554433322
Q ss_pred --------------EEEEccCC-ceEEEEcCC----------------------------------CeEEEEEcCCCcce
Q 011224 288 --------------LDVDWRNN-VSFATSSTD----------------------------------NMIYVCKIGENRPI 318 (490)
Q Consensus 288 --------------~~~~~~~~-~~~~~~~~d----------------------------------~~i~~~~~~~~~~~ 318 (490)
..+.|.++ ..++.++.+ ..|++|++..+...
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 56788655 345554432 27899999887765
Q ss_pred eEecCC------CCCeeEEEEcCCCCEEEEEeC----CCeEEEEecCCCceeeeeccc-cccE----EEEEEcCCCCCCC
Q 011224 319 KTFAGH------QGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLREH-SKEI----YTIRWSPTGSGTN 383 (490)
Q Consensus 319 ~~~~~h------~~~v~~v~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~-~~~i----~~v~~~p~g~~~~ 383 (490)
..+..+ ...+.+++|+|||+++++.+. +..|++||+.+++....+..+ ...+ ..++|+|+|..
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~-- 319 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK-- 319 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS--
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCe--
Confidence 556554 567899999999999877653 357999999988876554432 2333 37899999862
Q ss_pred CCCCcEEEEEEECCC------cEEEEe-CCCCe--EEEEeeCCCCCEEE-EEECCCCCEEEEEeCC---CcEEEEEcCCC
Q 011224 384 NPNQQLILASASFDS------TVKLWD-VELGK--LLYSLNGHREPVYS-LAFSPTGEYLASGSLD---KSMHIWSLKEG 450 (490)
Q Consensus 384 ~~~~~~~l~sgs~dg------~i~iwd-~~~~~--~~~~~~~h~~~v~~-l~~spdg~~l~s~s~d---g~i~iw~~~~~ 450 (490)
++++++..++ .|.+|| ...+. +...+..+...+.. ++|||||++|+..+.+ +.++||++...
T Consensus 320 -----l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 320 -----FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp -----EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred -----EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 2333366777 577777 34433 14455544444554 6999999999766554 78999998642
Q ss_pred --eEEEEEec----CCCEEEEEECCCCCEEEEEEC
Q 011224 451 --KIVKTYTG----NGGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 451 --~~~~~~~~----~~~v~~~~~~~~g~~la~~~~ 479 (490)
.....+.. ...+..++|+|+|++|+....
T Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 395 GNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp TTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred CCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 12333332 345789999999998887543
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1.5e-23 Score=201.21 Aligned_cols=268 Identities=12% Similarity=0.131 Sum_probs=209.7
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEcc
Q 011224 202 KDVTTLDWNGEGTLLATGSY-------DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK 272 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~-------dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~ 272 (490)
..+..++|+|+++++++++. ++.|.+||.... ....+. ....+.+++|+|++++++ ++..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45789999999999888874 568999998654 333443 334567899999999655 55567999999999
Q ss_pred CcceeEeeeeeccC---------eEEEEccCC--ceEEEE-cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEE
Q 011224 273 TEEWKQQFEFHSGP---------TLDVDWRNN--VSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 340 (490)
Q Consensus 273 ~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~-~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l 340 (490)
+++....+..+... +..+.+.++ ..+++. ..++.|++|+..+.+.+..+..+...+.+++|+|+++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence 99887777654322 455666543 334444 458899999999988888877666678899999999999
Q ss_pred EEEeCCCeEEEEecCCCceeeeecc----ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC
Q 011224 341 ASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 416 (490)
Q Consensus 341 ~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 416 (490)
++++.++.|.+||..+++.+..+.. +...+..++|+|++. .++++...++.|.+||+.+++.+..+..
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--------~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ--------RAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT--------EEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC--------EEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 9999999999999999988776654 445678899999986 3444555569999999999998887765
Q ss_pred CCCCEEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECC
Q 011224 417 HREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 417 h~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d 480 (490)
.. + ..++|+|+|++|+.++ .++.|.+||+.+++++..+.....+.+++|+|+|++|+++..+
T Consensus 272 ~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp SS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 43 2 5799999999665554 7899999999999999888877789999999999977766554
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.7e-23 Score=199.21 Aligned_cols=270 Identities=11% Similarity=0.111 Sum_probs=197.5
Q ss_pred EcCCCC-EEEEEeCCCeEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEeC-CCeEEEEEccCcce-eEeeeeec
Q 011224 209 WNGEGT-LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEW-KQQFEFHS 284 (490)
Q Consensus 209 ~s~~~~-~l~sg~~dg~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~-~~~~~~~~ 284 (490)
|.+++. .+++++.++.|++||... .....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 445444 477888899999999764 4445555556666 9999999997776665 89999999999887 66666666
Q ss_pred cCeEEEEccCCc-eEEEEcCC-C--eEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCE-EEEEeCCCe-EEEEecCCCc
Q 011224 285 GPTLDVDWRNNV-SFATSSTD-N--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVT-AKIWNMKQDK 358 (490)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~~~d-~--~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~dg~-i~iwd~~~~~ 358 (490)
.+...+.|.++. .++++..+ + .|++|++.....+..+..+ ....+++|+|+|++ ++++..++. |.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 665547776544 34444444 3 8999999988887776644 34689999999985 455566688 9999987644
Q ss_pred eee----eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE---EEEeeCCCCCEEEEEECCCCC
Q 011224 359 YVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL---LYSLNGHREPVYSLAFSPTGE 431 (490)
Q Consensus 359 ~~~----~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~spdg~ 431 (490)
.+. ...........++|+|+|. .+++++..++.|++||+.+++. +..+..+ ..+..++|+|+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~spdg~--------~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~ 233 (331)
T 3u4y_A 163 VLFDTGQEFISGGTRPFNITFTPDGN--------FAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGS 233 (331)
T ss_dssp CEEEEEEEEECSSSSEEEEEECTTSS--------EEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSS
T ss_pred cEeecCCccccCCCCccceEECCCCC--------EEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCC
Confidence 331 1123345678999999985 3556666789999999998887 7777644 5678999999999
Q ss_pred EEEEEe-CCCcEEEEEcCCCeE--EEEEecC--------CCEEEEEECCCCCEEEEEE-CCCcEEEEEee
Q 011224 432 YLASGS-LDKSMHIWSLKEGKI--VKTYTGN--------GGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 489 (490)
Q Consensus 432 ~l~s~s-~dg~i~iw~~~~~~~--~~~~~~~--------~~v~~~~~~~~g~~la~~~-~d~~v~v~~~~ 489 (490)
+|+.++ .++.|.+||+.++++ +..+... .....++|+|+|++|++++ .++.|.|||+.
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 776554 578899999999987 4444332 1235689999999886654 56799999974
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=1.2e-24 Score=230.28 Aligned_cols=277 Identities=13% Similarity=0.105 Sum_probs=208.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CC-----eEEEEECCCce-eEEecCCCC------------------------CEEEEE
Q 011224 201 SKDVTTLDWNGEGTLLATGSY-DG-----QARIWSTNGDL-KCTLSKHKG------------------------PIFSLK 249 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~-dg-----~i~iw~~~~~~-~~~~~~h~~------------------------~V~~l~ 249 (490)
...|.+++|||||++|++++. |+ .|++|++.+.. ...+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 99999987543 333433332 378899
Q ss_pred ecCCCCEEEEEeCCCeEEEEEccCcc--eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCC
Q 011224 250 WNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 327 (490)
Q Consensus 250 ~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~ 327 (490)
|+|+|++|++++. +.|++||+.++. ....+..+...+..+.|.++...+....++.|++|++..+........+...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCccc
Confidence 9999999999886 999999998872 2334555667788889987665444444679999999887665544444332
Q ss_pred ----------------eeEEEEcCCCCEEEEEeCCC---------------------------------eEEEEecCC-C
Q 011224 328 ----------------VNCVKWDPTGSLLASCSDDV---------------------------------TAKIWNMKQ-D 357 (490)
Q Consensus 328 ----------------v~~v~~~~~~~~l~s~~~dg---------------------------------~i~iwd~~~-~ 357 (490)
+.+++|+|||++|++++.|+ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47899999999999988765 788999988 7
Q ss_pred ceeeeec--cccccEEEEEEcCCCCCCCCCCCcEEEEEEE-----CCCcEEEEeCCCCeEEEEeeCCCC----CEEEEEE
Q 011224 358 KYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKLLYSLNGHRE----PVYSLAF 426 (490)
Q Consensus 358 ~~~~~~~--~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-----~dg~i~iwd~~~~~~~~~~~~h~~----~v~~l~~ 426 (490)
+...... .+...+..++| |+|. .|+.++ .+..|++||+.+++....+..+.. .+.+++|
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~---------~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQ---------HLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETT---------EEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCC---------EEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 6544332 36678899999 9986 455443 356899999999988776665543 4568999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcC-CCeEEEEEec-CCCEEEE-EECCCCCEEEEEE-CCC--cEEEEEee
Q 011224 427 SPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG-NGGIFEV-CWNKEGDKIAACF-ANH--TVCVLDFR 489 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~-~~~~~~~~~~-~~~v~~~-~~~~~g~~la~~~-~d~--~v~v~~~~ 489 (490)
+|||+++++++.||.++||.+. +++ ...+.. ...+..+ +|+|+|+.|++.+ .++ .+.||++.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999988888775 455 555544 4457777 5999999876554 444 88999874
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.7e-24 Score=201.83 Aligned_cols=253 Identities=16% Similarity=0.201 Sum_probs=190.8
Q ss_pred EEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC-cceeEeeeeec-cCeEEEEccCC
Q 011224 218 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHS-GPTLDVDWRNN 295 (490)
Q Consensus 218 sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~-~~~~~~~~~~~ 295 (490)
+++.++.|++|+........+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+. ..+..+.|.++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 45678999999998777667778999999999999999999886 88999999998 77766554442 45666777654
Q ss_pred -ceEEEEc--C--CCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEEecCC-Cceeeeeccccc
Q 011224 296 -VSFATSS--T--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ-DKYVHDLREHSK 368 (490)
Q Consensus 296 -~~~~~~~--~--d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~~~-~~~~~~~~~~~~ 368 (490)
..++.++ . ...|+.++..... ...+..+. .+.+++|+|++++|+ +++.++.++||++.. ......+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 4455555 2 3455666655544 33444333 488999999999877 788899999998642 233455666778
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-CCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC--------
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-------- 439 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-------- 439 (490)
.+.+++|+|++. .+++++..++.+++|++. .+..+..+..|...+..++|+|+|++|++++.+
T Consensus 174 ~~~~~~~s~dg~--------~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 174 RNDGPDYSPDGR--------WIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CEEEEEECTTSS--------EEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred ccccceECCCCC--------EEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 899999999986 234444469999999986 456667788888889999999999999988766
Q ss_pred ---CcEEEEEcCCCeEEEE--E-ecCCCEEEEEECCCCCEEEEEECCC
Q 011224 440 ---KSMHIWSLKEGKIVKT--Y-TGNGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 440 ---g~i~iw~~~~~~~~~~--~-~~~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
+.|.+|++.+++.... + .+...+..++|+|+|++|++++.+.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865333 3 2345688999999999999887653
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.7e-23 Score=199.87 Aligned_cols=291 Identities=11% Similarity=0.177 Sum_probs=196.0
Q ss_pred EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEECC--C
Q 011224 156 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-GQARIWSTN--G 232 (490)
Q Consensus 156 ~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d-g~i~iw~~~--~ 232 (490)
++++++.|+.|++|++..... .. .+... .+...+.+++|+|+|++|++++.+ +.|++|++. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~--------~~--~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~ 71 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA--------LT--LTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 71 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC--------EE--EEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEeCCCCCeEEEEEECCCCc--------EE--EeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence 444557899999999853110 01 11111 134568889999999999998887 999999986 3
Q ss_pred ce---eEEecCCCCCEEEEEecCCCCEEEEEeC-CCeEEEEEcc---CcceeEeeeeeccCeEEEEccCCc-eEE-EEcC
Q 011224 233 DL---KCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK---TEEWKQQFEFHSGPTLDVDWRNNV-SFA-TSST 303 (490)
Q Consensus 233 ~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 303 (490)
.. ...+..+. .+..++|+|++++|++++. ++.|.+||+. +......+..+ ..+..+.|.++. .++ ++..
T Consensus 72 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 72 GALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGG
T ss_pred CceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCC
Confidence 22 22344333 7789999999998876654 8899999994 33333333322 345566675543 344 4448
Q ss_pred CCeEEEEEcCC-Cccee----EecC-CCCCeeEEEEcCCCCEEEEE-eCCCeEEEEecCC--Cce--eeeec---cc---
Q 011224 304 DNMIYVCKIGE-NRPIK----TFAG-HQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQ--DKY--VHDLR---EH--- 366 (490)
Q Consensus 304 d~~i~~~~~~~-~~~~~----~~~~-h~~~v~~v~~~~~~~~l~s~-~~dg~i~iwd~~~--~~~--~~~~~---~~--- 366 (490)
++.|++|++.. +.... .+.. ....+.+++|+|++++++++ ..++.|.+|++.. +.. ...+. ..
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 89999999987 43321 2232 33478899999999976544 4899999999953 332 22221 11
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC--C--CeEEEEeeCCCCCEEEEEECCCCCEEEEEe-CCCc
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--L--GKLLYSLNGHREPVYSLAFSPTGEYLASGS-LDKS 441 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~--~--~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~ 441 (490)
...+..++|+|++. .+++++..++.|++||+. . .+.+..+..+.. +.+++|+|+|++|++++ .++.
T Consensus 230 ~~~~~~i~~s~dg~--------~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~ 300 (343)
T 1ri6_A 230 TRWAADIHITPDGR--------HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHH 300 (343)
T ss_dssp CCCEEEEEECTTSS--------EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCE
T ss_pred cCCccceEECCCCC--------EEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCe
Confidence 23566899999985 345566689999999998 2 345555655544 88999999999888887 6899
Q ss_pred EEEEEc--CCCeE--EEEEecCCCEEEEEECCCCC
Q 011224 442 MHIWSL--KEGKI--VKTYTGNGGIFEVCWNKEGD 472 (490)
Q Consensus 442 i~iw~~--~~~~~--~~~~~~~~~v~~~~~~~~g~ 472 (490)
|.+|++ .+|++ +..+.......+++|.|+-+
T Consensus 301 v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 301 ISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred EEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 999954 46654 44555545577888887654
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=2.1e-23 Score=198.57 Aligned_cols=277 Identities=8% Similarity=0.054 Sum_probs=195.7
Q ss_pred EEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC-CCeE
Q 011224 148 CAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-DGQA 225 (490)
Q Consensus 148 ~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~-dg~i 225 (490)
..|.+++. .+++++.++.|++||+.+++.. .... .+...+ .++|+|+|+++++++. ++.|
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-------------~~~~----~~~~~~-~~~~s~dg~~l~~~~~~~~~i 64 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-------------NQIT----LGYDFV-DTAITSDCSNVVVTSDFCQTL 64 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-------------EEEE----CCCCEE-EEEECSSSCEEEEEESTTCEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-------------eeEE----ccCCcc-eEEEcCCCCEEEEEeCCCCeE
Confidence 34666655 5778889999999998776421 1111 113445 9999999997776666 8999
Q ss_pred EEEECCCce--eEEecCCCCCEEEEEecCCCCEEEEEeCCC---eEEEEEccCcceeEeeeeeccCeEEEEccCC--ceE
Q 011224 226 RIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN--VSF 298 (490)
Q Consensus 226 ~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 298 (490)
++|+..... ...+..+..+..+++|+|++++|+++..++ .|.+||+.+++.+..+..+. ....+.|.++ ..+
T Consensus 65 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~ 143 (331)
T 3u4y_A 65 VQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLI 143 (331)
T ss_dssp EEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEE
T ss_pred EEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEE
Confidence 999986543 555666667766699999999999665553 99999999998877765543 3467777654 345
Q ss_pred EEEcCCCe-EEEEEcCCCccee----EecCCCCCeeEEEEcCCCCEE-EEEeCCCeEEEEecCCCce---eeeecccccc
Q 011224 299 ATSSTDNM-IYVCKIGENRPIK----TFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKY---VHDLREHSKE 369 (490)
Q Consensus 299 ~~~~~d~~-i~~~~~~~~~~~~----~~~~h~~~v~~v~~~~~~~~l-~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~ 369 (490)
++...++. +.+|++.....+. ..........+++|+|+|+++ +++..++.|.+||+.+++. +..+.. ...
T Consensus 144 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~ 222 (331)
T 3u4y_A 144 LIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNL 222 (331)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSC
T ss_pred EEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCC
Confidence 56666677 9999987644331 112334557899999999955 5555789999999998887 666654 356
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE--EEEeeCC----CC---CEEEEEECCCCCEEEEEe-CC
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGH----RE---PVYSLAFSPTGEYLASGS-LD 439 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~h----~~---~v~~l~~spdg~~l~s~s-~d 439 (490)
+..++|+|+|. .++++...++.|.+||+.+++. +..+..+ .. .++.++|+|+|++|++++ .+
T Consensus 223 ~~~~~~spdg~--------~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 223 PGTIVVSRDGS--------TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp CCCEEECTTSS--------EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred CceEEECCCCC--------EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 67899999986 3444555678899999999887 4444322 22 235689999999886555 56
Q ss_pred CcEEEEEcCCCeE
Q 011224 440 KSMHIWSLKEGKI 452 (490)
Q Consensus 440 g~i~iw~~~~~~~ 452 (490)
+.|.+|++.+..+
T Consensus 295 ~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 295 RELKVFTISGKVV 307 (331)
T ss_dssp TEEEEEETTSCEE
T ss_pred CcEEEEEecCCcc
Confidence 7999999986554
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=1.3e-23 Score=200.56 Aligned_cols=265 Identities=11% Similarity=0.190 Sum_probs=188.6
Q ss_pred EEEEEeCCCeEEEEECC--Cc-eeEEecCCCCCEEEEEecCCCCEEEEEeCC-CeEEEEEcc--Cccee--EeeeeeccC
Q 011224 215 LLATGSYDGQARIWSTN--GD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-KTAIVWDVK--TEEWK--QQFEFHSGP 286 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~--~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~~v~iwd~~--~~~~~--~~~~~~~~~ 286 (490)
++++++.++.|++|+.. +. .......|...+.+++|+|++++|++++.+ +.|++|++. ++... ..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 44555789999999985 22 222234577788999999999999988887 999999997 55543 2333323 5
Q ss_pred eEEEEccCCc--eEEEEcCCCeEEEEEcC---CCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEecCC-Cce
Q 011224 287 TLDVDWRNNV--SFATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQ-DKY 359 (490)
Q Consensus 287 ~~~~~~~~~~--~~~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~ 359 (490)
+..+.|.++. .++++..++.|.+|++. ....+..+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 5667776543 33455568899999994 33344444433 4588999999999888777 899999999987 544
Q ss_pred ee----eecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC--CeE--EEEee----CC--CCCEEEE
Q 011224 360 VH----DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLN----GH--REPVYSL 424 (490)
Q Consensus 360 ~~----~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--~~~--~~~~~----~h--~~~v~~l 424 (490)
.. .+.. ....+..++|+|++. .+++++..++.|++|++.. ++. ...+. ++ ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~--------~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQ--------YAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred eeecccccccCCCCCcceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 22 2222 334678899999985 3445556899999999953 332 22222 11 2357789
Q ss_pred EECCCCCEEE-EEeCCCcEEEEEcC--CC--eEEEEEecCCCEEEEEECCCCCEEEEEE-CCCcEEEEEee
Q 011224 425 AFSPTGEYLA-SGSLDKSMHIWSLK--EG--KIVKTYTGNGGIFEVCWNKEGDKIAACF-ANHTVCVLDFR 489 (490)
Q Consensus 425 ~~spdg~~l~-s~s~dg~i~iw~~~--~~--~~~~~~~~~~~v~~~~~~~~g~~la~~~-~d~~v~v~~~~ 489 (490)
+|+|+|++|+ +++.++.|.+|++. ++ +.+..+.....+..++|+|+|++|+++. .++.|.||++.
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9999998887 45579999999998 33 4455565555688999999999888887 68999999664
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.93 E-value=1.1e-23 Score=196.30 Aligned_cols=240 Identities=18% Similarity=0.280 Sum_probs=178.7
Q ss_pred ceeeccccccceeEEEECCCCCEEEEEECCCcEEEEecCC-CCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC
Q 011224 134 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212 (490)
Q Consensus 134 ~~~~l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~ 212 (490)
....+..|...|.+++|+|+|++|++++ ++.|++|++.+ +.... ... ..+...|.+++|+|+
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-------------~~~---~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-------------VDT---GFATICNNDHGISPD 95 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-------------CCC---TTCCCBCSCCEECTT
T ss_pred ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-------------ecc---ccccccccceEECCC
Confidence 3445667899999999999999999987 78999999976 53210 011 112356889999999
Q ss_pred CCEEEEEeC--CCeEEEE--ECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 213 GTLLATGSY--DGQARIW--STNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 213 ~~~l~sg~~--dg~i~iw--~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
|++|++++. ++...|| +..+.....+..+. .+..++|+|++++|+ +++.++.+++|++....
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~------------ 162 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS------------ 162 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT------------
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC------------
Confidence 999999993 3455555 55554444554443 489999999999877 78889999999854211
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEecC-CCceeeeecc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK-QDKYVHDLRE 365 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~ 365 (490)
.....+..|...+.+++|+|++++|+.++ .++.++||++. .+..+..+..
T Consensus 163 ----------------------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 163 ----------------------------GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp ----------------------------CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred ----------------------------CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 01122345667789999999999887666 59999999986 4556667777
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----------CcEEEEeCCCCeE--EEEeeCCCCCEEEEEECCCCCE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----------STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEY 432 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----------g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg~~ 432 (490)
+...+..++|+|++. +|++++.+ +.|.+||+.+++. +..+.+|...|.+++|+|+|++
T Consensus 215 ~~~~~~~~~~s~dg~---------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGD---------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp CSEEEEEEEECTTSS---------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred CCcccCCeEECCCCC---------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence 778899999999986 55555554 5699999988754 4555578888999999999999
Q ss_pred EEEEeCCC
Q 011224 433 LASGSLDK 440 (490)
Q Consensus 433 l~s~s~dg 440 (490)
|++++.+.
T Consensus 286 l~~~~~~~ 293 (297)
T 2ojh_A 286 FAYVRYFP 293 (297)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 98887653
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=5.5e-24 Score=218.90 Aligned_cols=267 Identities=13% Similarity=0.092 Sum_probs=201.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCeEEEEECCCceeEEecCCC-CCEEEEEecCCCCEEEEEeC---CCeEEEEEccC--
Q 011224 201 SKDVTTLDWNGEGTLLATGSY-DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKT-- 273 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~-dg~i~iw~~~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~-- 273 (490)
..+|.+++|+|||++|++++. ||+++||++.+.....+..|. ..|..++|+|+ ..+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 346999999999999999887 999999998777666676666 68999999999 67777665 55566765543
Q ss_pred -cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC----Ce
Q 011224 274 -EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----VT 348 (490)
Q Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----g~ 348 (490)
+............+..+.+..+..++++..++.+.+|++.++........+. .+++|+|||++|++++.+ +.
T Consensus 100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEE
T ss_pred CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeE
Confidence 2222111111112334445555444445444555599998876554443333 789999999999988877 78
Q ss_pred EEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC--cEEEEeCCCCeEEEEeeCCCCCEEEEE-
Q 011224 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLA- 425 (490)
Q Consensus 349 i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~- 425 (490)
|++||+.+++.. .+..+...+..++|+|+|. .|+++..++ .|++||+.+++.. .+.+|...+..++
T Consensus 177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~---------~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~ 245 (582)
T 3o4h_A 177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMK---------VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRP 245 (582)
T ss_dssp EEEEETTTCCCE-EECCSSCEEEEEEECTTSC---------EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCC
T ss_pred EEEEcCCCCCce-EeecCCCccccceECCCCC---------EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhh
Confidence 999999887754 5677888899999999997 677888888 8999999998887 7777877777777
Q ss_pred -------ECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCc---EEEEE
Q 011224 426 -------FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHT---VCVLD 487 (490)
Q Consensus 426 -------~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~---v~v~~ 487 (490)
|||||.++++++.|+++++|++ |+.... ..+.+.+++|+ +|+.+++++.+.+ +.+||
T Consensus 246 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 246 TAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred ccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999999999999999999999 776552 23568899999 9998888877644 55554
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3.3e-23 Score=218.12 Aligned_cols=279 Identities=10% Similarity=0.100 Sum_probs=200.7
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
...|.+++|||| ..++.+ .|+.|++||+.++.. ..+. .+...+.+++|||||++|+++ .
T Consensus 81 ~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~--------------~~l~----~~~~~~~~~~~SpdG~~la~~-~ 139 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV--------------TYLF----DTNEETASLDFSPVGDRVAYV-R 139 (706)
T ss_dssp -CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE--------------EEEE----CCTTCCTTCEECTTSSEEEEE-E
T ss_pred ccCceeEEECCC-CeEEEE-ECCEEEEEECCCCce--------------EEcc----CCcccccCCcCCCCCCEEEEE-E
Confidence 357999999999 655554 359999999876531 1111 123457889999999999985 6
Q ss_pred CCeEEEEECCC-----ceeEE-ecCCCCC--------------EEEEEecCCCCEEEEEe--------------------
Q 011224 222 DGQARIWSTNG-----DLKCT-LSKHKGP--------------IFSLKWNKKGDYLLTGS-------------------- 261 (490)
Q Consensus 222 dg~i~iw~~~~-----~~~~~-~~~h~~~--------------V~~l~~~~~~~~l~s~s-------------------- 261 (490)
++.|++|++.+ ..... ...+... +.++.|+|+|++|++++
T Consensus 140 ~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~ 219 (706)
T 2z3z_A 140 NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAE 219 (706)
T ss_dssp TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCE
T ss_pred CCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 89999999865 43332 3333332 47899999999999987
Q ss_pred -------------CCCeEEEEEccCcceeEeee--eeccCeEEEEccCCc-eEEEEcCCC-----eEEEEEcCCCcceeE
Q 011224 262 -------------CDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNV-SFATSSTDN-----MIYVCKIGENRPIKT 320 (490)
Q Consensus 262 -------------~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~d~-----~i~~~~~~~~~~~~~ 320 (490)
.+..|++||+.+++...... .+...+..+.|.++. .+++++.++ .|++|+..++.....
T Consensus 220 ~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~ 299 (706)
T 2z3z_A 220 SKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT 299 (706)
T ss_dssp EEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE
T ss_pred eEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE
Confidence 45789999999887654432 234457788887654 455555444 899999988733333
Q ss_pred ec--CCCC---CeeEEEEcC--CCCEEEEEeCCCeEEEEecC-CCceeeeeccccccEEE-EEEcCCCCCCCCCCCcEEE
Q 011224 321 FA--GHQG---EVNCVKWDP--TGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLIL 391 (490)
Q Consensus 321 ~~--~h~~---~v~~v~~~~--~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~-v~~~p~g~~~~~~~~~~~l 391 (490)
+. .+.. .+.+++|+| +|+++++++.|+.++||.+. .+..+..+..+...+.. ++|+|++. .++
T Consensus 300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~--------~l~ 371 (706)
T 2z3z_A 300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT--------RLY 371 (706)
T ss_dssp EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS--------EEE
T ss_pred EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC--------EEE
Confidence 22 2222 346789999 99999999999999999886 56667777777777876 79999986 345
Q ss_pred EEEECCC----cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC----CcEEEEEcCCCe
Q 011224 392 ASASFDS----TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD----KSMHIWSLKEGK 451 (490)
Q Consensus 392 ~sgs~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d----g~i~iw~~~~~~ 451 (490)
++++.++ .|..||+.+++ +..+. |...+.+++|||||++|+.++.+ +.|++|++.+++
T Consensus 372 ~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 372 FESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 5555555 67777877665 34444 66779999999999988876433 569999998887
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=9.2e-23 Score=194.18 Aligned_cols=270 Identities=13% Similarity=0.095 Sum_probs=196.2
Q ss_pred CEEEEEeCCCeEEEEECCCc-eeEEec-CCCC-CEEEEEecCCCCEE-EEEeCCCeEEEEEccCcceeEeeeeec-----
Q 011224 214 TLLATGSYDGQARIWSTNGD-LKCTLS-KHKG-PIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHS----- 284 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~~-~~~~~~-~h~~-~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~~~~~~~----- 284 (490)
.+|++++.++.|++||.... ....+. ++.. .+..++|+|+++++ ++++.++.|.+||+.+++....+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 47899999999999998754 333443 2221 47889999999876 556668999999999988777665422
Q ss_pred cCeEEEEccCCc-eEEEEc------------CCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 285 GPTLDVDWRNNV-SFATSS------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 285 ~~~~~~~~~~~~-~~~~~~------------~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
..+..+.|.++. .++++. .++.|++|++.+.+.+..+.. ...+.+++|+|++++|+++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 234456665443 444443 579999999988877766654 4457889999999988877 689999
Q ss_pred EecCCCceeeeeccccccEEEEEEcCCCCCCCCC--CCcE---EEEEEECCC----------cEEEEeCCCCeEE-EEee
Q 011224 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP--NQQL---ILASASFDS----------TVKLWDVELGKLL-YSLN 415 (490)
Q Consensus 352 wd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~--~~~~---~l~sgs~dg----------~i~iwd~~~~~~~-~~~~ 415 (490)
||+.+++.+..+..+... ..+.|+|++...... .... ....+..++ .|.+||+.+++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 999998877665543310 122667776521100 0000 111121222 5899999988764 3344
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+...+.+++|+|+|++|+++ ++.|.+||+.+++.+..+.....+.+++|+|+|++|++++.++.|.+||++
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 566678999999999999988 799999999999998888776678999999999999999889999999974
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=3.9e-24 Score=225.77 Aligned_cols=275 Identities=13% Similarity=0.176 Sum_probs=198.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCC---CEEEEEecCCCCEEEEEeCC---------CeEEEE
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKG---PIFSLKWNKKGDYLLTGSCD---------KTAIVW 269 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~---~V~~l~~~~~~~~l~s~s~D---------~~v~iw 269 (490)
.+.+++|+|||+++++ +.||+|++|+..+. ....+..|.. .|.+++|+|+|++|++++.+ +.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3677899999998776 78999999998654 4445556654 48999999999999998875 788899
Q ss_pred EccCcceeEeeee---eccCeEEEEccCCc-eEEEEcCCCeEEEEEcCCCcceeEecCCCCCe-----------------
Q 011224 270 DVKTEEWKQQFEF---HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEV----------------- 328 (490)
Q Consensus 270 d~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v----------------- 328 (490)
|+.+++. ..+.. +...+..+.|.++. .++.++. +.|++|++..+........+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9998876 22322 22235667787654 4554444 799999998877766655544333
Q ss_pred -eEEEEcCCCCEEEEEeCCC----------------------------------eEEEEecCCCceeeeeccc------c
Q 011224 329 -NCVKWDPTGSLLASCSDDV----------------------------------TAKIWNMKQDKYVHDLREH------S 367 (490)
Q Consensus 329 -~~v~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~------~ 367 (490)
.+++|+|||+.|++++.|+ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999987653 7999999888765555543 5
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEEC----CCcEEEEeCCCCeEEEEeeC-CCCCEE----EEEECCCCCEEEE--E
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASF----DSTVKLWDVELGKLLYSLNG-HREPVY----SLAFSPTGEYLAS--G 436 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~-h~~~v~----~l~~spdg~~l~s--~ 436 (490)
..+..++|+|+|. +|++.+. +..|++||+.+++....+.. +...+. .++|||||++|+. +
T Consensus 255 ~~~~~~~~SpDg~---------~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 255 YYITMVKWATSTK---------VAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp EEEEEEEESSSSE---------EEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred ceeEEEEEeCCCe---------EEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 6789999999985 4555432 35799999999887665543 334443 7899999997775 4
Q ss_pred eCCC------cEEEEE-cCCCe--EEEEEe-cCCCEEE-EEECCCCCEEEEEECC---CcEEEEEee
Q 011224 437 SLDK------SMHIWS-LKEGK--IVKTYT-GNGGIFE-VCWNKEGDKIAACFAN---HTVCVLDFR 489 (490)
Q Consensus 437 s~dg------~i~iw~-~~~~~--~~~~~~-~~~~v~~-~~~~~~g~~la~~~~d---~~v~v~~~~ 489 (490)
..++ .|.+|+ ..++. ....+. +...+.. ++|+|||+.|+..+.+ +.+.||++.
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 5677 577777 34444 033333 3444554 6999999999876655 788999874
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.1e-21 Score=186.13 Aligned_cols=271 Identities=10% Similarity=0.042 Sum_probs=203.0
Q ss_pred cccceeEEEECCCCCEEEEEEC-------CCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 141 HTSEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~-------D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
....+..++|+|++++|++++. ++.|.+||..+++.. ..+.. ...+..++|+++|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-------------~~~~~-----~~~~~~~~~s~dg 100 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-------------QAIHN-----DLKPFGATINNTT 100 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-------------EEEEE-----SSCCCSEEEETTT
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-------------EEEec-----CCCcceEEECCCC
Confidence 4456889999999998888774 568999998765421 11111 2336778999999
Q ss_pred CEEEE-EeCCCeEEEEECCC-ceeEEecCCCCC---------EEEEEecCCCCEEEEEe--CCCeEEEEEccCcceeEee
Q 011224 214 TLLAT-GSYDGQARIWSTNG-DLKCTLSKHKGP---------IFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 214 ~~l~s-g~~dg~i~iw~~~~-~~~~~~~~h~~~---------V~~l~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~ 280 (490)
++++. +..++.|.+||... .....+..+... +.+++|+|+++++++++ .++.|.+||+.+++....+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 96554 55579999999864 444455443322 68899999999887766 4889999999999888777
Q ss_pred eeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecC----CCCCeeEEEEcCCCCEEEEEeC-CCeEEEEec
Q 011224 281 EFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPTGSLLASCSD-DVTAKIWNM 354 (490)
Q Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----h~~~v~~v~~~~~~~~l~s~~~-dg~i~iwd~ 354 (490)
..+...+..+.|.+ ...++++..++.+++|+..+.+.+..+.. +...+.+++|+|++++++.++. ++.|.+||.
T Consensus 181 ~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 181 QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEET
T ss_pred cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 64444455666654 34566777789999999998887766653 5567889999999997666554 599999999
Q ss_pred CCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEE
Q 011224 355 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA 434 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~ 434 (490)
.+++.+..+..... ..++|+|++. .++++...++.|.+||..+++.+..+... ..+.+++|+|+|++|+
T Consensus 261 ~~~~~~~~~~~~~~--~~~~~s~dg~--------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 261 RNGNILAKVAAPES--LAVLFNPARN--------EAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLY 329 (353)
T ss_dssp TTCCEEEEEECSSC--CCEEEETTTT--------EEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEE
T ss_pred CCCcEEEEEEcCCC--ceEEECCCCC--------EEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEE
Confidence 99988777664332 5688999885 35555667999999999999998888754 4679999999999777
Q ss_pred EEeCCC
Q 011224 435 SGSLDK 440 (490)
Q Consensus 435 s~s~dg 440 (490)
.+..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 666553
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=4.6e-22 Score=196.17 Aligned_cols=253 Identities=15% Similarity=0.157 Sum_probs=171.2
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE----
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA---- 217 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~---- 217 (490)
...++.+++++++.+|++|+.|+ +++|+................... ........+...|.+++|+|+|++|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVD--KVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEE--CCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccc--cCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 34588999999999999999988 899876432111000000001110 00111122356799999999999999
Q ss_pred EEeCCCeEEEEECCCc------------eeEEecCCCCCEEEEEecCC-CCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 218 TGSYDGQARIWSTNGD------------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 218 sg~~dg~i~iw~~~~~------------~~~~~~~h~~~V~~l~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
+|+.|+.|+||++... ....+.+|...|++++|+|+ +++|++++.||+|++||++++...
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------- 185 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------- 185 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-------
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-------
Confidence 7889999999996432 13456779999999999998 789999999999999999875321
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
....+|...|.+++|+|+|++|++|+.||+|++||++ +.....+.
T Consensus 186 ----------------------------------~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 186 ----------------------------------CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp ----------------------------------EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred ----------------------------------eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 1223577789999999999999999999999999998 44444443
Q ss_pred cc-------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCc------EEEEeCCCCe----EE-EEee-------CCCC
Q 011224 365 EH-------SKEIYTIRWSPTGSGTNNPNQQLILASASFDST------VKLWDVELGK----LL-YSLN-------GHRE 419 (490)
Q Consensus 365 ~~-------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~------i~iwd~~~~~----~~-~~~~-------~h~~ 419 (490)
.+ ...+.++.|++++. +++++++.+|. +++|+++... .. ..+. +.+.
T Consensus 231 ~~~~~~~~~~~~v~~v~w~~~~~--------~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 302 (434)
T 2oit_A 231 CPPFYESDHPVRVLDVLWIGTYV--------FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ 302 (434)
T ss_dssp CCTTCCTTSCEEEEEEEEEETTE--------EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC
T ss_pred CCcccCCCCceeEEEEEEecCce--------EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC
Confidence 32 23789999998763 33444556643 8999997542 11 1111 2233
Q ss_pred CEEEEEECCCCCEEEEEeC-CCcEEEEEc
Q 011224 420 PVYSLAFSPTGEYLASGSL-DKSMHIWSL 447 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~-dg~i~iw~~ 447 (490)
+-..+.+-++.+++++++. .+.|.|...
T Consensus 303 ~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 303 HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 3333444467676665543 455666654
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=6.6e-22 Score=188.26 Aligned_cols=272 Identities=9% Similarity=0.016 Sum_probs=197.3
Q ss_pred CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCC-CeEEEEEcCCCCEE-EEEeCCCeEEEEECCC
Q 011224 155 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK-DVTTLDWNGEGTLL-ATGSYDGQARIWSTNG 232 (490)
Q Consensus 155 ~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~s~~~~~l-~sg~~dg~i~iw~~~~ 232 (490)
.+|++++.++.|.+||+.+++. +..+.. .+.. .+..++|+|+|+++ ++++.++.|.+|+...
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 65 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-------------DKVITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-------------EEEEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cEEEEcCCCCeEEEEECCCCcE-------------EEEEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 4789999999999999876531 111111 1111 37789999999766 4556678999999864
Q ss_pred c-eeEEecC-C----CCCEEEEEecCCCCEEEEEe------------CCCeEEEEEccCcceeEeeeeeccCeEEEEccC
Q 011224 233 D-LKCTLSK-H----KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294 (490)
Q Consensus 233 ~-~~~~~~~-h----~~~V~~l~~~~~~~~l~s~s------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (490)
. ....+.. + ...+.+++|+|++++|++++ .++.|.+||+.+++....+.. ...+..+.|.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence 3 3333332 2 22567899999999998886 579999999998887766654 33445566654
Q ss_pred Cc-eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC-C-----------------------eE
Q 011224 295 NV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-V-----------------------TA 349 (490)
Q Consensus 295 ~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-g-----------------------~i 349 (490)
+. .++++ ++.|++|++...+.+..+..+... ..+.|+|+++.++..+.. + .|
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 43 34444 688999999988877666544311 123789999866544432 2 46
Q ss_pred EEEecCCCcee-eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 350 KIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 350 ~iwd~~~~~~~-~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
.+||+.+++.. ..+..+...+..++|+|++. +|+++ ++.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 289 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKT---------RAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST 289 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSS---------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCC---------EEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC
Confidence 89999988764 22334556788899999986 45555 799999999999988877644 4578999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEEec
Q 011224 429 TGEYLASGSLDKSMHIWSLKEGKIVKTYTG 458 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 458 (490)
+|++|++++.++.|++||+.+++.+..+..
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 999999999999999999999998888754
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=4.3e-22 Score=196.41 Aligned_cols=245 Identities=19% Similarity=0.196 Sum_probs=175.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------ceeE-----EecCCCCCEEEEEecCCCCEEE----EEe
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----------DLKC-----TLSKHKGPIFSLKWNKKGDYLL----TGS 261 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-----------~~~~-----~~~~h~~~V~~l~~~~~~~~l~----s~s 261 (490)
..+..+++++++.++++++.++ ++||+... .... ....|.+.|++++|+|++++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3578899999999999999988 88886421 0010 1123667899999999999999 889
Q ss_pred CCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEE
Q 011224 262 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLL 340 (490)
Q Consensus 262 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l 340 (490)
.|++|++||+.+..... .... ..-..+..+.+|...|.+++|+|+ +.+|
T Consensus 116 ~d~~v~iwd~~~~~~~~-----~~~~-------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA-----KQQK-------------------------RPFAYHKLLKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp TEEEEEEEEHHHHHCTT-----CSSC-------------------------CCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred CCceEEEEEccccccCC-----cCCc-------------------------ceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence 99999999987541000 0000 000012345679999999999998 8899
Q ss_pred EEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC---
Q 011224 341 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--- 417 (490)
Q Consensus 341 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h--- 417 (490)
++++.||+|++||++++..+.....|...+.+++|+|+|. +|++|+.||.|++||++ ++....+..|
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~---------~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~ 235 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGK---------QLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY 235 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSS---------CEEEEETTSCEEEECTT-CCEEEEECCCTTC
T ss_pred EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCC---------EEEEEcCCCcEEEEccC-CcccccccCCccc
Confidence 9999999999999999877766677888999999999986 78999999999999998 6665555443
Q ss_pred ----CCCEEEEEECCCCCEEEE-EeCCCc------EEEEEcCCCe-----EEEEEec--------CCCEEEEEECCCCCE
Q 011224 418 ----REPVYSLAFSPTGEYLAS-GSLDKS------MHIWSLKEGK-----IVKTYTG--------NGGIFEVCWNKEGDK 473 (490)
Q Consensus 418 ----~~~v~~l~~spdg~~l~s-~s~dg~------i~iw~~~~~~-----~~~~~~~--------~~~v~~~~~~~~g~~ 473 (490)
...|.+++|++++.++++ ++.||. +++|++.+.+ ....+.. ...-+.+.+-++.++
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l 315 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL 315 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence 237999999999988865 344533 9999997642 1122211 111234455577777
Q ss_pred EEEEEC-CCcEEEEE
Q 011224 474 IAACFA-NHTVCVLD 487 (490)
Q Consensus 474 la~~~~-d~~v~v~~ 487 (490)
+++++. ...|.|+.
T Consensus 316 ~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 316 VLAASAASTEVSILA 330 (434)
T ss_dssp EEEEETTCSBCEEEE
T ss_pred EEEecCCCCceeEEE
Confidence 766644 44566664
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=9.1e-22 Score=188.35 Aligned_cols=274 Identities=13% Similarity=0.066 Sum_probs=183.8
Q ss_pred EEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEE-EEeCCCeE
Q 011224 147 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQA 225 (490)
Q Consensus 147 ~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~-sg~~dg~i 225 (490)
++++++++.++++++.++.|++||+.+++. ...+... ....+..++|+|+|++++ ++..++.|
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-------------~~~~~~~---~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-------------YKSCVMP---DKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-------------EEEEECS---SCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-------------EEEEecC---CCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 457888999999999999999999876531 1111111 112467899999998655 55578999
Q ss_pred EEEECCCc-eeEEecCC------CCCEEEEEecCCCCEEEEEeCC------------CeEEEEEccCcceeEeeeeeccC
Q 011224 226 RIWSTNGD-LKCTLSKH------KGPIFSLKWNKKGDYLLTGSCD------------KTAIVWDVKTEEWKQQFEFHSGP 286 (490)
Q Consensus 226 ~iw~~~~~-~~~~~~~h------~~~V~~l~~~~~~~~l~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~ 286 (490)
.+|+.... ....+..+ ...+.+++|+|+|++|++++.+ +.|.+||+.+++....
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~------- 140 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP------- 140 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC-------
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce-------
Confidence 99998754 33344322 2236789999999999998865 7888888776432211
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 366 (490)
+..+. +...+.+++|+|+|+ ++.++. .|.+||+.+++.+..+...
T Consensus 141 -------------------------------~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 141 -------------------------------VRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp -------------------------------SEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECST
T ss_pred -------------------------------eeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccccc
Confidence 11122 223577899999999 555543 4999999988877655432
Q ss_pred cc------------------------cEEEEEEcCCCCCCCCCC--CcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCC
Q 011224 367 SK------------------------EIYTIRWSPTGSGTNNPN--QQLILASASFDSTVKLWDVELGKLLYSLNGHREP 420 (490)
Q Consensus 367 ~~------------------------~i~~v~~~p~g~~~~~~~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~ 420 (490)
.. ....+++++++....... ...++......+.+++|++ ..+...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 256 (349)
T 1jmx_B 186 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTEL 256 (349)
T ss_dssp TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSC
T ss_pred ccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc---------ccCCCc
Confidence 10 233455554432100000 0011112223334444332 335567
Q ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 421 VYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 421 v~~l~~sp-dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+..++|+| +|++|+++ ++.|.+||+.+++.+..+.....+.+++|+|+|++|++++.++.|.|||++
T Consensus 257 ~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 257 YFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred ceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence 89999999 99999888 889999999999998888766668899999999988888888999999974
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=8.3e-21 Score=181.91 Aligned_cols=248 Identities=11% Similarity=0.148 Sum_probs=171.1
Q ss_pred CCeEEEEEcCCCCEEEEEeC---CCeEEEEECCCce---eEEecCCCCCEEEEEecCCCCEEEEEe-CCCeEEEEEccC-
Q 011224 202 KDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT- 273 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~---dg~i~iw~~~~~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd~~~- 273 (490)
..+..++|+|+|+ |++++. ++.|++|++.... ...+..+...+..++|+|++++|++++ .+++|.+|++..
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4567899999999 555544 6899999986433 233345677788999999999888887 789999999853
Q ss_pred cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEe
Q 011224 274 EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353 (490)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd 353 (490)
+.... +.. .......+. ...+...+.+++|+|+|++++++..++.|++|+
T Consensus 119 g~~~~-~~~---------------------------~~~~~~~p~--~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 119 GALTL-TDT---------------------------VQHSGHGPR--PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp SCEEE-EEE---------------------------EECCCCCSS--TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred CCeee-cce---------------------------eecCCCCCC--ccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 22111 100 000000000 112334588999999999777777889999999
Q ss_pred cC-CCceee--eecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC--CeE--EEEeeCCC------C
Q 011224 354 MK-QDKYVH--DLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGHR------E 419 (490)
Q Consensus 354 ~~-~~~~~~--~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--~~~--~~~~~~h~------~ 419 (490)
+. ++.... .+.. .......++|+|+|. .+++++..++.|++|++.. ++. +..+.... .
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~--------~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 240 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQ--------YAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHN 240 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCC
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCC--------EEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCC
Confidence 98 444321 2222 223567899999986 3555567789999999874 543 23333322 3
Q ss_pred CEEEEEECCCCCEE-EEEeCCCcEEEEEcC-CC--eEEEEEecC-CCEEEEEECCCCCEEEEEEC-CCcEEEEEe
Q 011224 420 PVYSLAFSPTGEYL-ASGSLDKSMHIWSLK-EG--KIVKTYTGN-GGIFEVCWNKEGDKIAACFA-NHTVCVLDF 488 (490)
Q Consensus 420 ~v~~l~~spdg~~l-~s~s~dg~i~iw~~~-~~--~~~~~~~~~-~~v~~~~~~~~g~~la~~~~-d~~v~v~~~ 488 (490)
.+..++|+|||++| ++...++.|.+|++. ++ +.+..+... ..+..++|+|+|++|+++.. ++.|.||++
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 48899999999987 566678999999997 23 445555543 34789999999998888765 589999965
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=1.9e-22 Score=212.66 Aligned_cols=314 Identities=12% Similarity=0.071 Sum_probs=212.7
Q ss_pred EEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC-----
Q 011224 147 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----- 221 (490)
Q Consensus 147 ~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~----- 221 (490)
.++|+|+|++++++ .|+.|++|++.++... .....+. .....|.+++|||||++|++++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-------------~~~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-------------TILSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-------------EEECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-------------EEEcccc-ccccceeeEEECCCCCeEEEEecCceeE
Confidence 67899999766554 6999999999876421 1111110 00124889999999999999876
Q ss_pred ----CCeEEEEECCCcee---EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee-eeeccCe------
Q 011224 222 ----DGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPT------ 287 (490)
Q Consensus 222 ----dg~i~iw~~~~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~------ 287 (490)
++.|++|++.+... ..+ ...+..++|+|+|++|+.++ ++.|++||+.++...... ..+...+
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred EeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 78999999877654 223 35688899999999999885 789999999887765432 1221111
Q ss_pred -----------EEEEccCC-ceEEEEcCCC----------------------------------eEEEEEcCCCcce---
Q 011224 288 -----------LDVDWRNN-VSFATSSTDN----------------------------------MIYVCKIGENRPI--- 318 (490)
Q Consensus 288 -----------~~~~~~~~-~~~~~~~~d~----------------------------------~i~~~~~~~~~~~--- 318 (490)
..+.|.++ ..++.++.|. .|++|++..+...
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~ 240 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQ 240 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCE
T ss_pred ceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcccee
Confidence 36777655 4555544331 7889998876542
Q ss_pred -----eEecCCCCCeeEEEEcCCCCEEEEEeCC----CeEEEEe----cCCCceeeee----ccccccEE-----EEEEc
Q 011224 319 -----KTFAGHQGEVNCVKWDPTGSLLASCSDD----VTAKIWN----MKQDKYVHDL----REHSKEIY-----TIRWS 376 (490)
Q Consensus 319 -----~~~~~h~~~v~~v~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~-----~v~~~ 376 (490)
..+.+|...+.+++|+||++++++.... ..|.+|| ..++++...+ ..+...+. .+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 320 (719)
T 1z68_A 241 EVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFS 320 (719)
T ss_dssp ECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEEC
T ss_pred EccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEEC
Confidence 2234688889999999998887775432 2488899 7777665544 34555555 78899
Q ss_pred CCCCCCCCCCCcEEEEEEECCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCC
Q 011224 377 PTGSGTNNPNQQLILASASFDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKE 449 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~ 449 (490)
|+|.. ++++++..+| .|.+||+..++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 321 pdg~~-------l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 321 YDAIS-------YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TTSSC-------EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCCCe-------EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 99862 2333455566 56777877666 45666666678888888 88777666554 8899998753
Q ss_pred --CeE-EEEEec-----CCCEEEEEECCCCCEEEEE-ECC--CcEEEEEe
Q 011224 450 --GKI-VKTYTG-----NGGIFEVCWNKEGDKIAAC-FAN--HTVCVLDF 488 (490)
Q Consensus 450 --~~~-~~~~~~-----~~~v~~~~~~~~g~~la~~-~~d--~~v~v~~~ 488 (490)
+.. ...+.. ...+..++|+|+|++++.. +.. ..+.+||+
T Consensus 392 ~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 392 GSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp SSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred CCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 421 233332 2357889999999977754 332 35667765
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=6.4e-21 Score=182.73 Aligned_cols=252 Identities=13% Similarity=0.155 Sum_probs=173.6
Q ss_pred ccccceeEEEECCCCCEEEEEEC---CCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 216 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~---D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l 216 (490)
.+...+..++|+|+|+ |++++. ++.|.+|++.++.. ..+.... .+...+..++|+|+|++|
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-----------~~~~~~~----~~~~~p~~~a~spdg~~l 100 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-----------HKLNTVV----APGTPPAYVAVDEARQLV 100 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-----------EEEEEEE----EESCCCSEEEEETTTTEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-----------EEeeeee----cCCCCCEEEEECCCCCEE
Confidence 4556788899999999 555543 68999999865421 1111111 123567889999999999
Q ss_pred EEEe-CCCeEEEEECCC--ce--eEEecC---------CCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc-CcceeEeee
Q 011224 217 ATGS-YDGQARIWSTNG--DL--KCTLSK---------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFE 281 (490)
Q Consensus 217 ~sg~-~dg~i~iw~~~~--~~--~~~~~~---------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~ 281 (490)
++++ .++.|.+|++.. .. ...+.. +...+.+++|+|+++.+++...++.|++|++. ++.+....
T Consensus 101 ~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~- 179 (347)
T 3hfq_A 101 YSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS- 179 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE-
T ss_pred EEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee-
Confidence 8888 679999999752 21 122211 12348899999999966677778999999987 34321110
Q ss_pred eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCC-CCCeeEEEEcCCCCEEE-EEeCCCeEEEEecCC--C
Q 011224 282 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ--D 357 (490)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~~~--~ 357 (490)
.+..+ ...+..++|+|+|++++ ++..++.|.+|++.. +
T Consensus 180 --------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 221 (347)
T 3hfq_A 180 --------------------------------------VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG 221 (347)
T ss_dssp --------------------------------------EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred --------------------------------------eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence 01111 12456799999999655 456789999999874 4
Q ss_pred ce--eeeecccc------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC---CCeEEEEeeCCCCCEEEEEE
Q 011224 358 KY--VHDLREHS------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAF 426 (490)
Q Consensus 358 ~~--~~~~~~~~------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~---~~~~~~~~~~h~~~v~~l~~ 426 (490)
+. +..+.... ..+..++|+|+|. .+++++..++.|.+|++. ..+.+..+..+...+..++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~--------~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 3hfq_A 222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGH--------FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL 293 (347)
T ss_dssp EEEEEEEEESSCTTCCSCCEEEEEEECTTSC--------EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE
T ss_pred ceEEeeeeeecCCCCCCCCcceeEEECCCCC--------EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE
Confidence 32 22222222 3478899999986 344677789999999987 23556667766667899999
Q ss_pred CCCCCEEEEEeCC-CcEEEE--EcCCCeEEE
Q 011224 427 SPTGEYLASGSLD-KSMHIW--SLKEGKIVK 454 (490)
Q Consensus 427 spdg~~l~s~s~d-g~i~iw--~~~~~~~~~ 454 (490)
+|||++|++++.+ +.|.+| +..+|++..
T Consensus 294 spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 294 DPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 9999998887764 899999 556777653
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=8.9e-22 Score=202.39 Aligned_cols=268 Identities=12% Similarity=0.109 Sum_probs=193.4
Q ss_pred cccceeEEEECCCCCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 141 HTSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~-D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
+..+|++++|+|||++||+++. ||+++||++.++.. +.+. ..+...|..++|||| ++++++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--------------~~lt---~~~~~~~~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--------------VKLN---REPINSVLDPHYGVG-RVILVR 81 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--------------EECC---SSCCSEECEECTTCS-EEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--------------Eeee---cccccccccccCCCC-eEEEEe
Confidence 3567999999999999999887 99999999754321 1111 112246899999999 788877
Q ss_pred eC---CCeEEEE--EC--CCceeEEecCCCCCEEEEEecCCCCE--EEEEeCCCeEEEEEccCcceeEeeeeeccCeEEE
Q 011224 220 SY---DGQARIW--ST--NGDLKCTLSKHKGPIFSLKWNKKGDY--LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290 (490)
Q Consensus 220 ~~---dg~i~iw--~~--~~~~~~~~~~h~~~V~~l~~~~~~~~--l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~ 290 (490)
+. +...+|| +. .+... .+..+. .+...+|+|+++. +++++.+ .+.+||+.+++.......+. ..+
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~ 155 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGF 155 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEE
T ss_pred ccCCCCcceEEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceE
Confidence 75 4555665 44 44433 333322 2346688888853 4444444 45599999887665544332 455
Q ss_pred EccC-CceEEEEcCC----CeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC--eEEEEecCCCceeeee
Q 011224 291 DWRN-NVSFATSSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDL 363 (490)
Q Consensus 291 ~~~~-~~~~~~~~~d----~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~ 363 (490)
.|.+ ...++.++.+ ..|++|++.++... .+.+|.+.+..++|+|||+.|+++..++ .|.+||+.+++.. .+
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 5643 4455545544 67999998876654 6778888999999999999999888899 8999999988877 66
Q ss_pred ccccccEEEEE--------EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 364 REHSKEIYTIR--------WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 364 ~~~~~~i~~v~--------~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
..+...+..+. |+|+|. ++++++.+|.+++|++ ++.+. .+...|.+++|+ +++++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~spdg~---------~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 234 ELPSKDFSSYRPTAITWLGYLPDGR---------LAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp CCSCSHHHHHCCSEEEEEEECTTSC---------EEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred cCCCcChhhhhhccccceeEcCCCc---------EEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEE
Confidence 66666665566 999984 7889999999999999 66554 344678999999 9999998
Q ss_pred EeCCC---cEEEEEcCC
Q 011224 436 GSLDK---SMHIWSLKE 449 (490)
Q Consensus 436 ~s~dg---~i~iw~~~~ 449 (490)
++.+. .|.+|+..+
T Consensus 299 ~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 299 HTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEETTEEEEEEEETTCC
T ss_pred EcCCCCCCeEEEEcCCC
Confidence 88774 477777543
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=4.4e-20 Score=177.91 Aligned_cols=268 Identities=12% Similarity=0.126 Sum_probs=180.3
Q ss_pred CCEEEEEeC----CCeEEEEECC---CceeEEecCCCCCEEEEEecCCCCEEEEEeCC----CeEEEEEccC--cceeEe
Q 011224 213 GTLLATGSY----DGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKT--EEWKQQ 279 (490)
Q Consensus 213 ~~~l~sg~~----dg~i~iw~~~---~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~--~~~~~~ 279 (490)
..+++.|++ ++.|.+|..+ +........+...+..++|+|++++|++++.+ +.|.+|++.. +.+...
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345566644 5689999753 22222111166777889999999999999886 7999998865 443322
Q ss_pred --eeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe------cC--------CCCCeeEEEEcCCCCEEEEE
Q 011224 280 --FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF------AG--------HQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 280 --~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~------~~--------h~~~v~~v~~~~~~~~l~s~ 343 (490)
...+......+.+.....+++...++.+.+|++.....+..+ .+ +...+.+++|+|+|++++++
T Consensus 93 ~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~ 172 (361)
T 3scy_A 93 NTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD 172 (361)
T ss_dssp EEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred eEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence 222334455666633334555567899999998754332211 11 12235789999999966554
Q ss_pred e-CCCeEEEEecCCCce------e-------eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCCCC
Q 011224 344 S-DDVTAKIWNMKQDKY------V-------HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELG 408 (490)
Q Consensus 344 ~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~ 408 (490)
+ .++.|++|++..... + ............++|+|+|. +|++++ .++.|.+|++.++
T Consensus 173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~---------~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK---------FAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS---------EEEEEETTTCEEEEEEEETT
T ss_pred eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC---------EEEEEcCCCCeEEEEEecCC
Confidence 4 588999998875431 1 11123345578899999986 444444 7899999999877
Q ss_pred eE--EEEee---CCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEcC--CCe--EEEEEecCCCEEEEEECCCCCEEEEE
Q 011224 409 KL--LYSLN---GHREPVYSLAFSPTGEYLASGSL--DKSMHIWSLK--EGK--IVKTYTGNGGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 409 ~~--~~~~~---~h~~~v~~l~~spdg~~l~s~s~--dg~i~iw~~~--~~~--~~~~~~~~~~v~~~~~~~~g~~la~~ 477 (490)
.. +..+. .+......++|+|||++|+++.. ++.|.+|++. +++ .+..+.....+..++|+|+|++|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~ 323 (361)
T 3scy_A 244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA 323 (361)
T ss_dssp EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE
T ss_pred ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE
Confidence 54 33332 23345789999999999876665 4899999995 455 34445443457899999999988887
Q ss_pred E-CCCcEEEEEee
Q 011224 478 F-ANHTVCVLDFR 489 (490)
Q Consensus 478 ~-~d~~v~v~~~~ 489 (490)
. .++.|.||.+.
T Consensus 324 ~~~~~~v~v~~~d 336 (361)
T 3scy_A 324 CRDTNVIQIFERD 336 (361)
T ss_dssp ETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEEE
Confidence 6 67899997653
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=1.1e-20 Score=183.80 Aligned_cols=308 Identities=12% Similarity=0.082 Sum_probs=186.8
Q ss_pred eeeccccccceeE-----EEECCCCCEEEEEEC-CCc--EEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEE
Q 011224 135 VTILEGHTSEVCA-----CAWSPAGSLLASGSG-DST--ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 206 (490)
Q Consensus 135 ~~~l~~H~~~V~~-----~~~sp~~~~l~sgs~-D~~--i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 206 (490)
+..|..|...+.. .+|||||++|+.++. ++. |.+||+.++.. ..+ ...+...+..
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~--------------~~l---t~~~~~~~~~ 85 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA--------------TQL---TEGRGDNTFG 85 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE--------------EEC---CCSSCBCSSS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce--------------EEe---eeCCCCCccc
Confidence 4456666655555 889999999998887 674 77778766531 111 1122233445
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCcee-EEecCCCCCEEEEE--ecCCCCEEEEEeCCCeEEEEEccCcceeEeeeee
Q 011224 207 LDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLK--WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 207 ~~~s~~~~~l~sg~~dg~i~iw~~~~~~~-~~~~~h~~~V~~l~--~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
++|+|||+.|+.++.++.|++|++.+... ..+..+...+.... ++|++.+++....+ ...+.. +.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~---------~~~~~~-~~-- 153 (388)
T 3pe7_A 86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIR---------REDWVP-LT-- 153 (388)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE---------GGGCCC-CC--
T ss_pred eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccccc---------Cccccc-cc--
Confidence 68999999999999999999999876433 33444444443333 47888776642111 000000 00
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCC------CeEEEEecCC
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDD------VTAKIWNMKQ 356 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d------g~i~iwd~~~ 356 (490)
.+..-..+.....+..|++|++.++... .+..+...+..++|+| +|+.|+.++.+ ..|.++|...
T Consensus 154 -------~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (388)
T 3pe7_A 154 -------DWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG 225 (388)
T ss_dssp -------SHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred -------ccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 0000000001122345667776665433 3334556788999999 99998887764 3677888765
Q ss_pred Cceeeeecccc--ccEEEEEEcCCCCCCCCCCCcEEEEEEEC-CC---cEEEEeCCCCeE--EEEeeCCCCC---EEEEE
Q 011224 357 DKYVHDLREHS--KEIYTIRWSPTGSGTNNPNQQLILASASF-DS---TVKLWDVELGKL--LYSLNGHREP---VYSLA 425 (490)
Q Consensus 357 ~~~~~~~~~~~--~~i~~v~~~p~g~~~~~~~~~~~l~sgs~-dg---~i~iwd~~~~~~--~~~~~~h~~~---v~~l~ 425 (490)
+.. ..+..+. ..+..+.|+|+|.. +++.+.. .+ .|++||+.+++. +..+.++... ...++
T Consensus 226 ~~~-~~l~~~~~~~~~~~~~~spdg~~--------l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 226 TNM-RKVKTHAEGESCTHEFWVPDGSA--------LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp CCC-EESCCCCTTEEEEEEEECTTSSC--------EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred Cce-EEeeeCCCCcccccceECCCCCE--------EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 543 3333333 35778899999862 3233332 22 399999998874 3334331111 11237
Q ss_pred ECCCCCEEEEE---------eCCCcEEEEEcCCCeEEEEEecCC-----------CEEEEEECCCCCEEEEEE-CCCcEE
Q 011224 426 FSPTGEYLASG---------SLDKSMHIWSLKEGKIVKTYTGNG-----------GIFEVCWNKEGDKIAACF-ANHTVC 484 (490)
Q Consensus 426 ~spdg~~l~s~---------s~dg~i~iw~~~~~~~~~~~~~~~-----------~v~~~~~~~~g~~la~~~-~d~~v~ 484 (490)
|+|||++|+.. ..+..|++|++.++++........ .+..++|+|||+.|+.++ .++...
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~ 376 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPA 376 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCcee
Confidence 99999988753 456789999999887654444433 367889999999888765 466666
Q ss_pred EEEe
Q 011224 485 VLDF 488 (490)
Q Consensus 485 v~~~ 488 (490)
||.+
T Consensus 377 l~~~ 380 (388)
T 3pe7_A 377 LYLA 380 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=1.4e-20 Score=198.85 Aligned_cols=277 Identities=12% Similarity=0.092 Sum_probs=182.3
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccc-cCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
...+++|+|||.+|+++ |+.|++|++.++... ..+.++.. ........++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 82 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-------------VFLENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-------------EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-------------EEEechhhhhhcccccceEECCCCCEEEEEECC
Confidence 46689999999999987 999999999876521 11222211 112223458999999999998876
Q ss_pred ---------CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee-eeccCeEEEEc
Q 011224 223 ---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDW 292 (490)
Q Consensus 223 ---------g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~~~~~~~~ 292 (490)
+.+.+||+.+.....+..|.+.+...+|+|+|+.|+.+ .|+.|++|++.++...+... .+...
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~------ 155 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI------ 155 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTT------
T ss_pred eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccc------
Confidence 56679999887776778888899999999999999887 47899999998876433211 11110
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCC---------CCeeEEEEcCCCCEEEEEeCC-----------------
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDPTGSLLASCSDD----------------- 346 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~---------~~v~~v~~~~~~~~l~s~~~d----------------- 346 (490)
.+.++. +...++.|||||+.||.++.|
T Consensus 156 ---------------------------~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~ 208 (740)
T 4a5s_A 156 ---------------------------IYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (740)
T ss_dssp ---------------------------EEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred ---------------------------eecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence 111111 122345666666665555321
Q ss_pred -------------------CeEEEEecCC---Cc--eeeeec------cccccEEEEEEcCCCCCCCCCCCcEEEEEE-E
Q 011224 347 -------------------VTAKIWNMKQ---DK--YVHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASA-S 395 (490)
Q Consensus 347 -------------------g~i~iwd~~~---~~--~~~~~~------~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg-s 395 (490)
.+|++||+.+ +. ....+. .+...+..++|+|+|. +++.. .
T Consensus 209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~---------~~~~~~~ 279 (740)
T 4a5s_A 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQER---------ISLQWLR 279 (740)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTE---------EEEEEEE
T ss_pred CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCe---------EEEEEeC
Confidence 2588899988 63 222333 2667789999999985 33333 2
Q ss_pred C---CCcEEEEeCCCCe----EE--EEe--eCCCCCEE-----EEEECCCCCEEE-EEeC-C--CcEEEEEcCCCeEEEE
Q 011224 396 F---DSTVKLWDVELGK----LL--YSL--NGHREPVY-----SLAFSPTGEYLA-SGSL-D--KSMHIWSLKEGKIVKT 455 (490)
Q Consensus 396 ~---dg~i~iwd~~~~~----~~--~~~--~~h~~~v~-----~l~~spdg~~l~-s~s~-d--g~i~iw~~~~~~~~~~ 455 (490)
. +..|++||+.+++ +. ..+ .+|...|. .++|||||+.|+ ..+. + ..|.+|++.++.....
T Consensus 280 r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~l 359 (740)
T 4a5s_A 280 RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFI 359 (740)
T ss_dssp SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEES
T ss_pred CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEec
Confidence 2 3469999998876 22 112 44655554 789999999887 6664 3 4688888887766554
Q ss_pred EecCCCEEEEEECCCCCEEEEEEC
Q 011224 456 YTGNGGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 456 ~~~~~~v~~~~~~~~g~~la~~~~ 479 (490)
..+...+..+.+ +||+.|+..+.
T Consensus 360 T~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 360 TKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp CCSSSCEEEEEE-ECSSEEEEEES
T ss_pred ccCCEEEEEEEE-EeCCEEEEEEe
Confidence 445445665542 44776665443
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=4.1e-19 Score=171.14 Aligned_cols=256 Identities=11% Similarity=0.063 Sum_probs=173.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC----CeEEEEECCC--ce---eEEecCCCCCEEEEEecCCCCEEEEEe-CCCeEEEEE
Q 011224 201 SKDVTTLDWNGEGTLLATGSYD----GQARIWSTNG--DL---KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWD 270 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~d----g~i~iw~~~~--~~---~~~~~~h~~~V~~l~~~~~~~~l~s~s-~D~~v~iwd 270 (490)
...+..++|+|+|++|++++.+ +.|.+|+.+. .. ......+......+++ ++++|++++ .+++|.+|+
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~ 126 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFP 126 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEE
Confidence 3456789999999999999886 7999998653 22 2233445566777888 777777665 688999999
Q ss_pred ccCcceeEee---eee-----------ccCeEEEEccCCc--eEEEEcCCCeEEEEEcCCCcc------e-------eEe
Q 011224 271 VKTEEWKQQF---EFH-----------SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRP------I-------KTF 321 (490)
Q Consensus 271 ~~~~~~~~~~---~~~-----------~~~~~~~~~~~~~--~~~~~~~d~~i~~~~~~~~~~------~-------~~~ 321 (490)
+........+ ..+ ...+..+.|.++. .+++...++.+++|++..... + ...
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~ 206 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK 206 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee
Confidence 9754322111 111 1123557776544 445556688999998875431 1 112
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEecCCCce--eeee---ccccccEEEEEEcCCCCCCCCCCCcEEEEEEE
Q 011224 322 AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILASAS 395 (490)
Q Consensus 322 ~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~---~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs 395 (490)
..+...+..++|+|+|+++++++ .++.|.+|++.++.. +..+ ..+......++|+|+|. +|+++.
T Consensus 207 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~---------~l~v~~ 277 (361)
T 3scy_A 207 VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK---------YLYASN 277 (361)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS---------EEEEEE
T ss_pred cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC---------EEEEEC
Confidence 23345678999999999887766 689999999987654 2222 22334567999999986 454444
Q ss_pred -C-CCcEEEEeCC--CCe--EEEEeeCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE--cCCCeEEEEEe--cCCCEEE
Q 011224 396 -F-DSTVKLWDVE--LGK--LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWS--LKEGKIVKTYT--GNGGIFE 464 (490)
Q Consensus 396 -~-dg~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iw~--~~~~~~~~~~~--~~~~v~~ 464 (490)
. ++.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++.|.+|. ..+|++..... ....+.+
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~ 356 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVC 356 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEE
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeE
Confidence 4 5899999985 444 4444554 45678999999999998887 678999965 45777654421 2345788
Q ss_pred EEEC
Q 011224 465 VCWN 468 (490)
Q Consensus 465 ~~~~ 468 (490)
++|.
T Consensus 357 v~~~ 360 (361)
T 3scy_A 357 LKFV 360 (361)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8885
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=205.04 Aligned_cols=271 Identities=14% Similarity=0.130 Sum_probs=188.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCceeEE-ecCCCC---CEEEEEecCCCCEEEEEeC---------CCeEEEEEcc
Q 011224 206 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKG---PIFSLKWNKKGDYLLTGSC---------DKTAIVWDVK 272 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-~~~h~~---~V~~l~~~~~~~~l~s~s~---------D~~v~iwd~~ 272 (490)
+++|+|+|+++++ +.|+.|++|+..+..... +..|.. .|.+++|+|+|++|++++. +++|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999966555 469999999987654443 444433 4889999999999998876 7899999999
Q ss_pred CcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe-cCCCCCe-----------------eEEEEc
Q 011224 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEV-----------------NCVKWD 334 (490)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v-----------------~~v~~~ 334 (490)
+++....... ...+..+.|.++...++...++.|++|++..+...... .++...| .+++|+
T Consensus 99 ~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 99 NGEFVRGNEL-PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTEECCSSCC-CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCccccceec-CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 8876211111 23466677876554333335789999999876654332 2222222 589999
Q ss_pred CCCCEEEEEeCCC----------------------------------eEEEEecCCCcee--------eeeccccccEEE
Q 011224 335 PTGSLLASCSDDV----------------------------------TAKIWNMKQDKYV--------HDLREHSKEIYT 372 (490)
Q Consensus 335 ~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~--------~~~~~~~~~i~~ 372 (490)
|||++|++++.|. .|++||+.+++.. ..+..+...+..
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 9999999988652 7889999887643 223457778999
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECC----CcEEEEe----CCCCeEEEEe----eCCCCCEE-----EEEECCCCCEEEE
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFD----STVKLWD----VELGKLLYSL----NGHREPVY-----SLAFSPTGEYLAS 435 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~d----g~i~iwd----~~~~~~~~~~----~~h~~~v~-----~l~~spdg~~l~s 435 (490)
++|+|++. ++++.... ..|.+|| +.+++....+ .+|...|. .++|+|||+.|+.
T Consensus 258 ~~~SpD~~---------~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 258 LTWVTDER---------VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp EEESSSSE---------EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred eEEeCCCe---------EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 99999964 55554322 2488899 7777655444 46777676 8899999996654
Q ss_pred --EeCCC--cEEEEEcCCCeEEEEEe-cCCCEEEEEECCCCCEEEEEECC-----CcEEEEEee
Q 011224 436 --GSLDK--SMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR 489 (490)
Q Consensus 436 --~s~dg--~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~~g~~la~~~~d-----~~v~v~~~~ 489 (490)
+..+| .|.+|++.+++. ..+. +...+..+.++ +|+.|+..+.+ +.+.+|.+.
T Consensus 329 ~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 329 IFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 44555 577777777664 3333 33457777777 88888777654 778888764
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=1.1e-18 Score=168.47 Aligned_cols=249 Identities=11% Similarity=0.097 Sum_probs=167.5
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecC-CCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCE--EE
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIA-DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL--LA 217 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~--l~ 217 (490)
+...+..++|+|+|++|++++.+ .|.+|++. ++.. ..+..... ...+.+++|+|+|++ ++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-----------~~~~~~~~-----~g~~~~~~~spdg~~l~~~ 100 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-----------VHEASHPI-----GGHPRANDADTNTRAIFLL 100 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-----------EEEEEEEC-----CSSGGGGCTTSCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-----------EEeeEeec-----CCCCccEEECCCCCEEEEE
Confidence 33467899999999999999888 99999986 4421 01111110 012445889999994 55
Q ss_pred EEe-------------CCCeEEEEECC--CceeEEec----CCCCCEEEEEecCCCCEEEEEeC-CCeEEEEEcc-Ccce
Q 011224 218 TGS-------------YDGQARIWSTN--GDLKCTLS----KHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK-TEEW 276 (490)
Q Consensus 218 sg~-------------~dg~i~iw~~~--~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~-~~~~ 276 (490)
++. .++.+.+|++. +.....+. .+...+.+++|+|+|++|+++.. +++|++|++. +++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred EecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence 553 68999999975 33332232 25567899999999998887654 6899999987 5543
Q ss_pred eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEecC
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMK 355 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~iwd~~ 355 (490)
..... ..+..|...+..++|+|+|+++++++. ++.|.+|++.
T Consensus 181 ~~~~~-------------------------------------~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 181 ELVGS-------------------------------------VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEEEE-------------------------------------EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEeee-------------------------------------EecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 21000 001113445788999999999887765 7899999875
Q ss_pred --CCcee---eeec---c----ccc------cEEEEE-EcCCCCCCCCCCCcEEEEEEEC-CC-----cEEEEeCC-CCe
Q 011224 356 --QDKYV---HDLR---E----HSK------EIYTIR-WSPTGSGTNNPNQQLILASASF-DS-----TVKLWDVE-LGK 409 (490)
Q Consensus 356 --~~~~~---~~~~---~----~~~------~i~~v~-~~p~g~~~~~~~~~~~l~sgs~-dg-----~i~iwd~~-~~~ 409 (490)
+++.. ..+. . +.. .+..++ |+|+|. +|++++. ++ .|.+|++. +++
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---------~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---------YMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---------EEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC---------EEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 45432 1121 1 121 478899 999986 3444432 22 89999986 566
Q ss_pred EEE---EeeCCCCCEEEEEECC---CCCEEEEEeCC-CcEEEEEcCCCeE
Q 011224 410 LLY---SLNGHREPVYSLAFSP---TGEYLASGSLD-KSMHIWSLKEGKI 452 (490)
Q Consensus 410 ~~~---~~~~h~~~v~~l~~sp---dg~~l~s~s~d-g~i~iw~~~~~~~ 452 (490)
... .+..+...+..++|+| ||++|++++.+ +.|.+|++....+
T Consensus 295 ~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence 543 2333444567899999 89999998864 8999999876643
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=2.9e-18 Score=165.45 Aligned_cols=265 Identities=14% Similarity=0.127 Sum_probs=177.4
Q ss_pred EEEEEeCC--CeEEEEEC--CCceeEEec----CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc-CcceeEeeeee-c
Q 011224 215 LLATGSYD--GQARIWST--NGDLKCTLS----KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFH-S 284 (490)
Q Consensus 215 ~l~sg~~d--g~i~iw~~--~~~~~~~~~----~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~-~ 284 (490)
+++.|++. +.|.+|+. .......+. .....+..++|+|++++|++++.+ +|.+|++. ++++....... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556553 46777654 222222111 233467789999999999999888 99999997 77655433321 1
Q ss_pred cCeEEEEccCCce--EE-EEc-------------CCCeEEEEEcCC-CcceeEec----CCCCCeeEEEEcCCCCEEEEE
Q 011224 285 GPTLDVDWRNNVS--FA-TSS-------------TDNMIYVCKIGE-NRPIKTFA----GHQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 285 ~~~~~~~~~~~~~--~~-~~~-------------~d~~i~~~~~~~-~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~ 343 (490)
+.+..+.+.++.. ++ ++. .++.+.+|++.. +.....+. .+...+.+++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 2234456665544 33 332 688999999874 44332222 245678999999999988776
Q ss_pred eC-CCeEEEEecC-CCcee--eeec--cccccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCC--CCeEEE--
Q 011224 344 SD-DVTAKIWNMK-QDKYV--HDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVE--LGKLLY-- 412 (490)
Q Consensus 344 ~~-dg~i~iwd~~-~~~~~--~~~~--~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~--~~~~~~-- 412 (490)
.. ++.|++|++. +++.. ..+. .+...+..++|+|+|. +|++++ .++.|.+|++. +++...
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~---------~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 233 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGN---------YLYALMEAGNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSS---------EEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCC---------EEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence 54 6899999998 66543 2333 2355688999999986 455555 57899999765 565432
Q ss_pred -Eee-------CCCC------CEEEEE-ECCCCCEEEEEeCC-C-----cEEEEEcC-CCeEEEE---Eec-CCCEEEEE
Q 011224 413 -SLN-------GHRE------PVYSLA-FSPTGEYLASGSLD-K-----SMHIWSLK-EGKIVKT---YTG-NGGIFEVC 466 (490)
Q Consensus 413 -~~~-------~h~~------~v~~l~-~spdg~~l~s~s~d-g-----~i~iw~~~-~~~~~~~---~~~-~~~v~~~~ 466 (490)
.+. +|.. .+..++ |+|||++|++++.+ . +|.+|++. +|++... ... ...+..++
T Consensus 234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a 313 (365)
T 1jof_A 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA 313 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence 222 1222 488999 99999998876543 2 89999996 6776542 322 23456789
Q ss_pred ECC---CCCEEEEEEC-CCcEEEEEee
Q 011224 467 WNK---EGDKIAACFA-NHTVCVLDFR 489 (490)
Q Consensus 467 ~~~---~g~~la~~~~-d~~v~v~~~~ 489 (490)
|+| +|++|+++.. +++|.||++.
T Consensus 314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 999 8999998876 4899999874
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=1.3e-18 Score=167.40 Aligned_cols=289 Identities=9% Similarity=0.091 Sum_probs=193.8
Q ss_pred CCCEEEEEE------CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC-----
Q 011224 153 AGSLLASGS------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----- 221 (490)
Q Consensus 153 ~~~~l~sgs------~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~----- 221 (490)
++++++... .|+.|.+||..+++.. ..+.. ...+ .++|+|||++++++..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~-------------~~i~~----g~~p--~i~~spdg~~lyv~~~~~~~~ 74 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL-------------GMVPT----AFNG--HVQVSNDGKKIYTMTTYHERI 74 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEE-------------EEEEC----CEEE--EEEECTTSSEEEEEEEEETTS
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEE-------------EEecC----CCCC--ceEECCCCCEEEEEEeccccc
Confidence 455555543 4789999998765421 11111 1122 7899999999999863
Q ss_pred -----CCeEEEEECCC-ceeEEecC------CCCCEEEEEecCCCCEEEEEeC--CCeEEEEEccCcceeEe-eeeeccC
Q 011224 222 -----DGQARIWSTNG-DLKCTLSK------HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFHSGP 286 (490)
Q Consensus 222 -----dg~i~iw~~~~-~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~-~~~~~~~ 286 (490)
++.|.+||... .....+.. +......++|+|+|++|+++.. +++|.+||+.+++.+.. +......
T Consensus 75 ~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~ 154 (361)
T 2oiz_A 75 TRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW 154 (361)
T ss_dssp SSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE
T ss_pred ccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc
Confidence 67899999764 33334332 2234567899999999998864 68999999999887665 4321111
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCC-Ccce------eEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPI------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~------~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
...+.......+++.+.|+.+..++... ++.. ..+..+..++ .+.++|++..++..+.++.+.++|+.....
T Consensus 155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~ 233 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV 233 (361)
T ss_dssp EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC
T ss_pred eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc
Confidence 1112222345777888889888888765 3332 1122222222 233467787777788899999999875532
Q ss_pred e--eeecc------c----cccEEEEEEcCCCCCCCCCCCcEEEEEEE----------CCCcEEEEeCCCCeEEEEeeCC
Q 011224 360 V--HDLRE------H----SKEIYTIRWSPTGSGTNNPNQQLILASAS----------FDSTVKLWDVELGKLLYSLNGH 417 (490)
Q Consensus 360 ~--~~~~~------~----~~~i~~v~~~p~g~~~~~~~~~~~l~sgs----------~dg~i~iwd~~~~~~~~~~~~h 417 (490)
. ..+.. . ......++|+|++. .++++.. ..+.|.+||+.+++.+.++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~--------~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~ 305 (361)
T 2oiz_A 234 KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG--------RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR 305 (361)
T ss_dssp EEEEEEESCCHHHHHTTCEECCSSCEEEETTTT--------EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT
T ss_pred eecccccccCccccccccccCCeeEEEEecCCC--------eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC
Confidence 1 11110 0 01111257778764 2334433 1358999999999999999887
Q ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC--eEEEEEe-cCCCEEEEEECCCCC
Q 011224 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG--KIVKTYT-GNGGIFEVCWNKEGD 472 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~--~~~~~~~-~~~~v~~~~~~~~g~ 472 (490)
. +.+|+|+|||++|++++. +.|.+||..++ +++.++. .......++++|+|.
T Consensus 306 ~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 306 D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 6 899999999999998887 99999999999 9998874 344688999999985
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=5.1e-19 Score=184.67 Aligned_cols=281 Identities=10% Similarity=0.048 Sum_probs=187.6
Q ss_pred eeccccccceeEEEECCCCCEEEEE--ECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE--------
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASG--SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-------- 205 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sg--s~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-------- 205 (490)
..+.+|...|..++|++++-+++++ +.++...||....+... +.+.. +...|.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~l~~----~~~~~~~~~~~~~~ 79 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE-------------ESALP----APWNVRNRVFEYSG 79 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE-------------EESSC----TTCCBCCCGGGTCC
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc-------------ceeCC----CCccccccccccCC
Confidence 3577899999999999887777777 56889999986332110 11111 112222
Q ss_pred -EEEEc--CCCCE-EEEEeC-CCeEEEEECC--C-ceeEEecC-----CCCCEEEEEecCCCCEEEEEeCC---------
Q 011224 206 -TLDWN--GEGTL-LATGSY-DGQARIWSTN--G-DLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCD--------- 263 (490)
Q Consensus 206 -~~~~s--~~~~~-l~sg~~-dg~i~iw~~~--~-~~~~~~~~-----h~~~V~~l~~~~~~~~l~s~s~D--------- 263 (490)
...|+ |||++ |+.++. +..|.+|+.. + .....+.. |...+..++|+|+|++|++++.+
T Consensus 80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 44555 99998 766554 5677777776 3 44455555 66788999999999999988876
Q ss_pred -CeEEEEEccC------cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcC
Q 011224 264 -KTAIVWDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP 335 (490)
Q Consensus 264 -~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~ 335 (490)
.+|++||+.+ +. ...+. .+...+..++|+|
T Consensus 160 ~~~i~~~~~~~~~~~~~~~------------------------------------------~~~l~~~~~~~~~~~~~Sp 197 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSA------------------------------------------VRELSDDAHRFVTGPRLSP 197 (662)
T ss_dssp EEEEEEEETTSTTTTCGGG------------------------------------------SEESSCSCSSEECCCEECT
T ss_pred eeEEEEEECCCCccccCCc------------------------------------------eeEEEecCCCcccCceECC
Confidence 3566666554 22 12233 3445677899999
Q ss_pred CCCEEEEEeCC--------CeEEEEecC-CC---ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC--cEE
Q 011224 336 TGSLLASCSDD--------VTAKIWNMK-QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS--TVK 401 (490)
Q Consensus 336 ~~~~l~s~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg--~i~ 401 (490)
||++|+.++.+ ..|.+||+. ++ ........+...+..+.|+|+|. ++++++.++ .|.
T Consensus 198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~---------l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS---------LIVATDRTGWWNLH 268 (662)
T ss_dssp TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC---------EEEEECTTSSCEEE
T ss_pred CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe---------EEEEECCCCCeEEE
Confidence 99999888755 379999998 56 33333334567899999999986 677788888 666
Q ss_pred EEeCCCCeEEEEeeCCCCC--------EEEEEECCCCCEEEEEeCCCcEEEE--EcCCCeEEEEEecCC-CEEEEEECCC
Q 011224 402 LWDVELGKLLYSLNGHREP--------VYSLAFSPTGEYLASGSLDKSMHIW--SLKEGKIVKTYTGNG-GIFEVCWNKE 470 (490)
Q Consensus 402 iwd~~~~~~~~~~~~h~~~--------v~~l~~spdg~~l~s~s~dg~i~iw--~~~~~~~~~~~~~~~-~v~~~~~~~~ 470 (490)
+||+.+++.......+... +..++|+|+++++++++. +.++|| ++.+++ +..+..+. .+..+ |+++
T Consensus 269 ~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~ 345 (662)
T 3azo_A 269 RVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVS 345 (662)
T ss_dssp EECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEE
T ss_pred EEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecC
Confidence 6777666654333333222 567999999999999999 999999 555565 45555443 35555 2555
Q ss_pred CCEE--EEEECCCcEEEEE
Q 011224 471 GDKI--AACFANHTVCVLD 487 (490)
Q Consensus 471 g~~l--a~~~~d~~v~v~~ 487 (490)
++.+ ++++.+....||.
T Consensus 346 ~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 346 GTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp TTEEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEcCCCCCCEEEE
Confidence 6543 3445555444543
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1.1e-17 Score=158.89 Aligned_cols=247 Identities=12% Similarity=0.147 Sum_probs=183.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEECC-CceeEEec-CCCCCEEEEEecCCC
Q 011224 201 SKDVTTLDWNGEGTLLATGSYD------------------------GQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKG 254 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~d------------------------g~i~iw~~~-~~~~~~~~-~h~~~V~~l~~~~~~ 254 (490)
-..|.+++++++|+++++...+ +.|.+||.. +.....+. ++-....+++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999988877 479999986 45444333 444678999999999
Q ss_pred CEEEEEeCCCeEEEEEccCcc-eeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEE
Q 011224 255 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 333 (490)
Q Consensus 255 ~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 333 (490)
+.+++.+.++.|++||..... .+..+.... . ...-.++......+++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-------------------------------~-~g~~~~~~~~P~~ia~ 150 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSM-------------------------------Q-PGSDQNHFCQPTDVAV 150 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTT-------------------------------B-CCCSTTCCSSEEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccC-------------------------------C-CCCCccccCCCcEEEE
Confidence 988888889999999975432 221111000 0 0000123456789999
Q ss_pred cC-CCCEEEEEe-CCCeEEEEecCCCceeeeeccc----------cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEE
Q 011224 334 DP-TGSLLASCS-DDVTAKIWNMKQDKYVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 401 (490)
Q Consensus 334 ~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~----------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~ 401 (490)
+| ++.++++.+ .++.|++|+ ..+..+..+... ......++++|++. .++++...++.|+
T Consensus 151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--------~l~v~d~~~~~I~ 221 (329)
T 3fvz_A 151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--------QLCVADRENGRIQ 221 (329)
T ss_dssp CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT--------EEEEEETTTTEEE
T ss_pred eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC--------EEEEEECCCCEEE
Confidence 99 888888887 699999999 456666655322 23378899999832 3677778899999
Q ss_pred EEeCCCCeEEEEee--CCCCCEEEEEECCCCCEEEE-------EeCCCcEEEEEcCCCeEEEEEec----CCCEEEEEEC
Q 011224 402 LWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLAS-------GSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWN 468 (490)
Q Consensus 402 iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s-------~s~dg~i~iw~~~~~~~~~~~~~----~~~v~~~~~~ 468 (490)
+|+..+++.+..+. .+...+.+++|+| +..+++ .+.+..|++|++.+|+++.++.. ...+.+++++
T Consensus 222 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 222 CFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp EEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred EEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence 99999899888874 4566789999999 433333 33456899999999999988742 2358999999
Q ss_pred CCCCEEEEEECCCcEEEEEee
Q 011224 469 KEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 469 ~~g~~la~~~~d~~v~v~~~~ 489 (490)
|+|+++++...++.|.+|++.
T Consensus 301 ~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 301 EDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp TTSEEEEEESSSCCEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCC
Confidence 999888899999999999874
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=3.1e-17 Score=152.46 Aligned_cols=236 Identities=14% Similarity=0.264 Sum_probs=176.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEec------CCCCCEEEEEe-cCCCCEEEEEeC-CCeEEEEEc
Q 011224 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS------KHKGPIFSLKW-NKKGDYLLTGSC-DKTAIVWDV 271 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~------~h~~~V~~l~~-~~~~~~l~s~s~-D~~v~iwd~ 271 (490)
+...+.+++++++++++++...++.|.+|+..+.....+. +|...+.++++ .+++..+++... ++.|.+||.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence 3456899999999999998889999999998876655553 24467899999 466666666543 889999984
Q ss_pred cCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
++.....+. ..+...+.+++++|+|+++++...++.|.+
T Consensus 108 -~g~~~~~~~----------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 108 -YGQFVRKFG----------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVII 146 (286)
T ss_dssp -TSCEEEEEC----------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred -CCcEEEEec----------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 443222110 012345788999999998888888999999
Q ss_pred EecCCCceeeeec--cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC--CCCEEEEEEC
Q 011224 352 WNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--REPVYSLAFS 427 (490)
Q Consensus 352 wd~~~~~~~~~~~--~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~s 427 (490)
||.. ++.+..+. .+...+..++++|++. ++++.+.++.|++||.. ++.+..+..+ ...+..|+++
T Consensus 147 ~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d 215 (286)
T 1q7f_A 147 FDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE---------IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGIN 215 (286)
T ss_dssp ECTT-SCEEEEEECTTTCSSEEEEEECSSSE---------EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEEC
T ss_pred EcCC-CCEEEEeCCCCccCCcEEEEECCCCC---------EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEEC
Confidence 9964 45554443 3345688999999874 66677778999999974 5666666543 3578999999
Q ss_pred CCCCEEEEEeCCC-cEEEEEcCCCeEEEEEecC---CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 428 PTGEYLASGSLDK-SMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 428 pdg~~l~s~s~dg-~i~iw~~~~~~~~~~~~~~---~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|+|+++++...++ .|.+|+. +++.+..+... ..+.+++|+|+|+++++ ..+++|.||++.
T Consensus 216 ~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 216 SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred CCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 9999999888886 9999995 56666666543 23789999999987777 578999999864
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=8.2e-19 Score=170.86 Aligned_cols=272 Identities=11% Similarity=0.024 Sum_probs=179.0
Q ss_pred eEEEEEcCCCCEEEEEeCC---CeEEEEECCCceeEEecCCCCCEE-EEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 204 VTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~d---g~i~iw~~~~~~~~~~~~h~~~V~-~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
+..++|||||++|+..... ..|.+|+..+.....+..+...+. .+.|+|+|++|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 5677899999998877543 478888987765555544444333 378999999999999999999999998876555
Q ss_pred eeeeccCeEE---E----------------EccCCc-eEEEE-----cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEc
Q 011224 280 FEFHSGPTLD---V----------------DWRNNV-SFATS-----STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 334 (490)
Q Consensus 280 ~~~~~~~~~~---~----------------~~~~~~-~~~~~-----~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~ 334 (490)
+..+...... + .+.++. .++.. ..+..|++|++..+...... .+...+..+.|+
T Consensus 118 ~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~s 196 (396)
T 3c5m_A 118 YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYR 196 (396)
T ss_dssp EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE
T ss_pred EecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceEC
Confidence 4433221111 1 111111 11111 34567899998877654443 456678999999
Q ss_pred C-CCCEEEEEeCC------CeEEEEecCCCceeeeeccc-cccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----CcEE
Q 011224 335 P-TGSLLASCSDD------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVK 401 (490)
Q Consensus 335 ~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~ 401 (490)
| +++.|+.++.+ ..|.+||+.++......... ...+..+.|+|+|. .|+.++.+ +.|+
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~---------~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS---------AMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS---------CEEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC---------EEEEEecCCCCccceEE
Confidence 9 78877766654 35888888765433222211 23577899999986 33444332 4499
Q ss_pred EEeCCCCeEEEEeeCCCCCEEEEEECC-CCCEEEEEe----------------CCCcEEEEEcCCCeEEEEEecCC----
Q 011224 402 LWDVELGKLLYSLNGHREPVYSLAFSP-TGEYLASGS----------------LDKSMHIWSLKEGKIVKTYTGNG---- 460 (490)
Q Consensus 402 iwd~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~s----------------~dg~i~iw~~~~~~~~~~~~~~~---- 460 (490)
+||+.+++...... .. .+. ++|+| +|++|++++ .+..|++|++.+++.........
T Consensus 268 ~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCC
T ss_pred EEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccc
Confidence 99998886543222 11 233 89999 999988765 34789999998887543333332
Q ss_pred -------CEEEEEECCCCCEEEEEEC-CCcEEEEEe
Q 011224 461 -------GIFEVCWNKEGDKIAACFA-NHTVCVLDF 488 (490)
Q Consensus 461 -------~v~~~~~~~~g~~la~~~~-d~~v~v~~~ 488 (490)
.+..++|+|+|+.|+.++. ++...||-+
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 1567899999998887765 555555543
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=1.6e-17 Score=157.87 Aligned_cols=249 Identities=12% Similarity=0.179 Sum_probs=182.9
Q ss_pred ccceeEEEECCCCCEEEEEECC------------------------CcEEEEecCCCCCCCCCCCCCceeEEEEeeeccc
Q 011224 142 TSEVCACAWSPAGSLLASGSGD------------------------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D------------------------~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (490)
-+.|.+++++|+|+++++.+.+ +.|.+||..++... ... +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------~~~-~-- 86 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------QSS-G-- 86 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE-------------EEE-C--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE-------------ecc-C--
Confidence 3569999999999999998887 46888887655421 111 1
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCc--eeEEe---------cCCCCCEEEEEecC-CCCEEEEEe-CCC
Q 011224 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTL---------SKHKGPIFSLKWNK-KGDYLLTGS-CDK 264 (490)
Q Consensus 198 ~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~--~~~~~---------~~h~~~V~~l~~~~-~~~~l~s~s-~D~ 264 (490)
..+......++++++|+++++...++.|++|+..+. ....+ ..+.....+|+++| ++..+++.+ .++
T Consensus 87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 122346889999999999999888999999998876 44444 34455789999999 788778876 699
Q ss_pred eEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCEEEEE
Q 011224 265 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASC 343 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~ 343 (490)
.|++||. .+.....+..... .+ . ...++-....+++++|+ +.++++.
T Consensus 167 ~I~~~~~-~g~~~~~~~~~g~-----------------~~---------~-----~~~~~~~~p~gia~d~~~g~l~v~d 214 (329)
T 3fvz_A 167 RIVQFSP-SGKFVTQWGEESS-----------------GS---------S-----PRPGQFSVPHSLALVPHLDQLCVAD 214 (329)
T ss_dssp EEEEECT-TSCEEEEECEECC-----------------SS---------S-----CCTTEESCEEEEEEETTTTEEEEEE
T ss_pred eEEEEcC-CCCEEEEeccCCC-----------------CC---------C-----CCCcccCCCcEEEEECCCCEEEEEE
Confidence 9999994 4444333221100 00 0 00112234778999998 7888888
Q ss_pred eCCCeEEEEecCCCceeeeec--cccccEEEEEEcCCCCCCCCCCCcEEEEEE-------ECCCcEEEEeCCCCeEEEEe
Q 011224 344 SDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASA-------SFDSTVKLWDVELGKLLYSL 414 (490)
Q Consensus 344 ~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg-------s~dg~i~iwd~~~~~~~~~~ 414 (490)
..++.|++|+..+++.+..+. .+...+..++|+| +. ++++. +.+..|++|++.+++.+..+
T Consensus 215 ~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~---------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 215 RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF---------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE---------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE---------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 899999999998888887764 3456788999998 31 22222 23458999999999998887
Q ss_pred e---CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 415 N---GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 415 ~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
. ++...+..|+++|+|.++++...++.|++|++.
T Consensus 285 ~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 285 KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred cCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 3 567779999999999888999999999999975
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.3e-16 Score=148.31 Aligned_cols=247 Identities=14% Similarity=0.227 Sum_probs=177.3
Q ss_pred ccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE-cCCCCEEEE
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGTLLAT 218 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-s~~~~~l~s 218 (490)
+|...+.+++++|++.++++.+.++.|.+|+.. +... ..+ ...+....+...+..+++ .+++.++++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~----------~~~-~~~~~~~~~~~~p~~i~~~~~~g~l~v~ 94 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFK----------FQF-GECGKRDSQLLYPNRVAVVRNSGDIIVT 94 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEE----------EEE-CCBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEE----------EEe-cccCCCcccccCceEEEEEcCCCeEEEE
Confidence 466778999999999999988899999999965 2210 000 001111123356889999 577777776
Q ss_pred EeC-CCeEEEEECCCceeEEec-CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc
Q 011224 219 GSY-DGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296 (490)
Q Consensus 219 g~~-dg~i~iw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (490)
... ++.|++|+..+.....+. .+...+.+++++|+++.+++.+.++.|.+||... .....+.
T Consensus 95 ~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~--------------- 158 (286)
T 1q7f_A 95 ERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFG--------------- 158 (286)
T ss_dssp ECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEE---------------
T ss_pred cCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeC---------------
Confidence 644 899999997777665553 3445789999999999888888889999998643 2211110
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc--cccEEEEE
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH--SKEIYTIR 374 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~v~ 374 (490)
..++...+.+++++|+|+++++.+.++.|++||.. +..+..+... ...+..++
T Consensus 159 ------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~ 213 (286)
T 1q7f_A 159 ------------------------CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVG 213 (286)
T ss_dssp ------------------------CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEE
T ss_pred ------------------------CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEE
Confidence 01233457899999999988888889999999974 4555555433 35688999
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCC-cEEEEeCCCCeEEEEeeCCC--CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 375 WSPTGSGTNNPNQQLILASASFDS-TVKLWDVELGKLLYSLNGHR--EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~h~--~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
++|+|. ++++...++ .|++|+. .++.+..+..+. ..+.+++|+|+|+++++ +.|++|++|++...
T Consensus 214 ~d~~G~---------l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 214 INSNGE---------ILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ECTTCC---------EEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ECCCCC---------EEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 999885 666666665 9999996 466666665443 34789999999987777 67999999998653
No 171
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=9.8e-18 Score=160.17 Aligned_cols=261 Identities=12% Similarity=0.109 Sum_probs=165.6
Q ss_pred ceeEEEECCCCCEEE-EEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeeccc--ccCCCCeEEEEEcCCCCEEEEEe
Q 011224 144 EVCACAWSPAGSLLA-SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT--NEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~-sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
.+..++|+|+|++++ +++.++.|.+||+.++... ....... ......+..++|+|+|++|++++
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~-------------~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 110 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT-------------FHANLSSVPGEVGRSMYSFAISPDGKEVYATV 110 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-------------EEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE-------------EEEEcccccccccccccceEECCCCCEEEEEc
Confidence 578999999998655 5557899999998765321 1111000 00012367899999999999988
Q ss_pred CC------------CeEEEEECCCc----eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 221 YD------------GQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 221 ~d------------g~i~iw~~~~~----~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
.+ +.|.+|++... ....+. +...+.+++|+|+++ +++++. .|.+||+.+++....+....
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~ 186 (349)
T 1jmx_B 111 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRN 186 (349)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTT
T ss_pred ccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccc
Confidence 65 89999997642 122233 334688999999999 666544 49999999887665543221
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCC-----------EEEEEeCCCeEEEEe
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-----------LLASCSDDVTAKIWN 353 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-----------~l~s~~~dg~i~iwd 353 (490)
..... +. . ...+.+|......... ....++++++++. ++.....++.+++|+
T Consensus 187 ~~~~~--~~--------~-~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
T 1jmx_B 187 WNRKG--YS--------A-PDVLYFWPHQSPRHEF------SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 249 (349)
T ss_dssp CCCTT--BC--------C-CBCCCCCCCCCTTCEE------EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred cCCcc--cc--------C-ccceeeecCCCcceeE------EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence 00000 00 0 0001111111110000 0123455655442 122333445555554
Q ss_pred cCCCceeeeeccccccEEEEEEcC-CCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCE
Q 011224 354 MKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432 (490)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~ 432 (490)
+. .+...+..++|+| ++. +++++ ++.|.+||+.+++.+..+... ..+.+++|+|+|++
T Consensus 250 ~~---------~~~~~~~~~~~sp~dg~---------~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 308 (349)
T 1jmx_B 250 FA---------DLTELYFTGLRSPKDPN---------QIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDK 308 (349)
T ss_dssp EE---------ECSSCEEEEEECSSCTT---------EEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSC
T ss_pred cc---------cCCCcceeeEecCCCCC---------EEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCE
Confidence 42 2455678999999 886 45555 889999999999988777643 45689999999999
Q ss_pred EEEEeCCCcEEEEEcCCCeEEEEEecC
Q 011224 433 LASGSLDKSMHIWSLKEGKIVKTYTGN 459 (490)
Q Consensus 433 l~s~s~dg~i~iw~~~~~~~~~~~~~~ 459 (490)
|++++.++.|++||+.+++++..+...
T Consensus 309 l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 309 LYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEecCCCeEEEEeccccceeeeeecC
Confidence 988888999999999999988887654
No 172
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=8.1e-18 Score=163.79 Aligned_cols=277 Identities=10% Similarity=-0.000 Sum_probs=176.2
Q ss_pred cceeEEEECCCCCEEEEEECC---CcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 143 SEVCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D---~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
..+..++|||||++|+..+.. ..|.+|++.++.. ..+.. ........+.|+|||++|+.+
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--------------~~l~~---~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--------------VQLTE---GKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--------------EECCC---SSCBCTTTCEECTTSSEEEEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE--------------EEeec---CCCCccccceECCCCCEEEEE
Confidence 347888999999998776543 3678888765431 11111 111122336899999999999
Q ss_pred eCCCeEEEEECCCceeE-EecCCCCCEEE-------------------EEecCCCCEEEEE-----eCCCeEEEEEccCc
Q 011224 220 SYDGQARIWSTNGDLKC-TLSKHKGPIFS-------------------LKWNKKGDYLLTG-----SCDKTAIVWDVKTE 274 (490)
Q Consensus 220 ~~dg~i~iw~~~~~~~~-~~~~h~~~V~~-------------------l~~~~~~~~l~s~-----s~D~~v~iwd~~~~ 274 (490)
+.++.|++|+..+.... ....+...... +.|+|+++.++.+ ..+..|.+||+.++
T Consensus 99 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred EcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 99999999998764433 23323332222 3467777766544 45678999999988
Q ss_pred ceeEeeeeeccCeEEEEccC--CceEEEEcCC------CeEEEEEcCCCcceeEecCCC--CCeeEEEEcCCCCEEEEEe
Q 011224 275 EWKQQFEFHSGPTLDVDWRN--NVSFATSSTD------NMIYVCKIGENRPIKTFAGHQ--GEVNCVKWDPTGSLLASCS 344 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d------~~i~~~~~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~ 344 (490)
+..... .+...+..+.|.+ ...++..+.+ ..|+++++....... +..+. ..+..++|+|+|+.|+.++
T Consensus 179 ~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (396)
T 3c5m_A 179 ELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVS 256 (396)
T ss_dssp CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred cEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEe
Confidence 765544 3445566777765 3334443322 468888886554333 33332 3578899999999877776
Q ss_pred CC-----CeEEEEecCCCceeeeeccccccEEEEEEcC-CCCCCCCCCCcEEEEEEE----------------CCCcEEE
Q 011224 345 DD-----VTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASAS----------------FDSTVKL 402 (490)
Q Consensus 345 ~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs----------------~dg~i~i 402 (490)
.+ +.|.+||+.+++...... .. ... +.|+| +|. ++++++ .++.|.+
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~---------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~ 324 (396)
T 3c5m_A 257 YFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGS---------LMVGDGCDAPVDVADADSYNIENDPFLYV 324 (396)
T ss_dssp EETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSS---------EEEEEECCC----------CCCCCCEEEE
T ss_pred cCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCc---------eEEEecCCcceeeccccccccCCCCcEEE
Confidence 54 459999998876533221 11 123 88999 875 455443 3478999
Q ss_pred EeCCCCeEEEEeeCCCC-----------CEEEEEECCCCCEEEEEeC-CCcEEEE--EcCCCe
Q 011224 403 WDVELGKLLYSLNGHRE-----------PVYSLAFSPTGEYLASGSL-DKSMHIW--SLKEGK 451 (490)
Q Consensus 403 wd~~~~~~~~~~~~h~~-----------~v~~l~~spdg~~l~s~s~-dg~i~iw--~~~~~~ 451 (490)
||+.+++.. .+..+.. .+..++|+|||++|+.++. ++...|| ++.++.
T Consensus 325 ~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 325 LNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp EETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred EecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 999877643 3444443 2567899999998887764 4554555 444544
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=1.3e-16 Score=151.65 Aligned_cols=266 Identities=11% Similarity=0.103 Sum_probs=189.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
..|.+++|++++..+++.+.++.++.| .+.....+..+...+.+++|+|+++.++++..++.|.+||+.+++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI--TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE--ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc--ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 447778888888877777888899999 334455666677778999999999988888889999999998887665443
Q ss_pred eeccCeEEEEccCCc-eEEEEcCC----CeEEEEEcCCCcceeEec--CCCCCeeEEEEcCCCCEEEEEeC------CCe
Q 011224 282 FHSGPTLDVDWRNNV-SFATSSTD----NMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD------DVT 348 (490)
Q Consensus 282 ~~~~~~~~~~~~~~~-~~~~~~~d----~~i~~~~~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~------dg~ 348 (490)
.+...+..+.+..+. .+++...+ +.|++|+.........+. .+...+.+++++|+|+++++... .+.
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCce
Confidence 445567788876544 44555555 689999987765543332 23457899999999998887654 355
Q ss_pred EEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeEEE--------EeeCCCC
Q 011224 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKLLY--------SLNGHRE 419 (490)
Q Consensus 349 i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~~~--------~~~~h~~ 419 (490)
|..|+..+++... +......+..++|+|++. .++++.+.++.|.+|++.. +..+. .+.++ .
T Consensus 164 l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~--------~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~ 233 (333)
T 2dg1_A 164 VYYVSPDFRTVTP-IIQNISVANGIALSTDEK--------VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E 233 (333)
T ss_dssp EEEECTTSCCEEE-EEEEESSEEEEEECTTSS--------EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred EEEEeCCCCEEEE-eecCCCcccceEECCCCC--------EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence 6666655544332 222334578899999875 2445556678999999863 32221 12222 4
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-------CEEEEEECCCCCEEEEEECC
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-------GIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-------~v~~~~~~~~g~~la~~~~d 480 (490)
.+..++++++|+++++...++.|.+|+. +++.+..+.... .+.+++|+|+|+.|..++.+
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 6788999999998888888899999998 577776665432 47899999999877766555
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=2.1e-16 Score=151.00 Aligned_cols=255 Identities=11% Similarity=0.125 Sum_probs=175.1
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC---C--eEEE
Q 011224 203 DVTTLDWNGEGTLLATGS---------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---K--TAIV 268 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~---------~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~--~v~i 268 (490)
.+...++ ||++++... .++.|.+|+..+.....+ ..+..++|+|+|++|+.++.+ + .|.+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4667777 888877642 356889999876554444 567889999999999877654 3 4788
Q ss_pred EEccCcceeEeeeeeccCeEEEEccCC-ceEEEEcC---------------------------CCeEEEEEcCCCcceeE
Q 011224 269 WDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSST---------------------------DNMIYVCKIGENRPIKT 320 (490)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---------------------------d~~i~~~~~~~~~~~~~ 320 (490)
||+.+++......... +..+.|.++ ..++.++. ...|++|++..+..+..
T Consensus 90 ~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 167 (347)
T 2gop_A 90 ADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEE 167 (347)
T ss_dssp EETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEE
T ss_pred EECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEee
Confidence 8888877655544433 777888644 44554432 25688999987766344
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCCC-------eEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEE
Q 011224 321 FAGHQGEVNCVKWDPTGSLLASCSDDV-------TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 393 (490)
Q Consensus 321 ~~~h~~~v~~v~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~s 393 (490)
+.. . .+..++|+|+| +++++..++ ...||.+.++. ...+..+ ..+..+ +|+|. .|+.
T Consensus 168 l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~---------~l~~ 231 (347)
T 2gop_A 168 FEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGE---------RILL 231 (347)
T ss_dssp EEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSS---------CEEE
T ss_pred ecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCC---------EEEE
Confidence 444 3 78899999999 888776652 44555544443 3334333 444444 88886 3444
Q ss_pred EECC--------CcEEEEeCCCCeEEEEeeCCCCCEEE-EEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEE
Q 011224 394 ASFD--------STVKLWDVELGKLLYSLNGHREPVYS-LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFE 464 (490)
Q Consensus 394 gs~d--------g~i~iwd~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~ 464 (490)
++.+ ..|.+|| +++......+|...+.. +.|+ ++ ++++++.++.++|| +.+++......+.+.|.+
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~ 306 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMG 306 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEE
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEe
Confidence 4433 4688888 56554444556677886 9999 98 99999999999999 887777666656667899
Q ss_pred EEECCCCCEEEEEECCCcE-EEEEe
Q 011224 465 VCWNKEGDKIAACFANHTV-CVLDF 488 (490)
Q Consensus 465 ~~~~~~g~~la~~~~d~~v-~v~~~ 488 (490)
++|+| ..+++++.+++. .||.+
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEEEE
T ss_pred eeeeC--cEEEEEcCCCChHHheEe
Confidence 99999 677777666554 66654
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=3e-16 Score=149.97 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=174.7
Q ss_pred ceeEEEECCCCCEEEEEE---------CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 144 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs---------~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
.+...+| ||++|+... .++.|.+|++.++.. +.+ ..+..++|||||+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~--------------~~l--------~~~~~~~~SpDg~ 71 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR--------------RFI--------ENATMPRISPDGK 71 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE--------------EEE--------ESCEEEEECTTSS
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce--------------EEc--------ccCCCeEECCCCC
Confidence 4667777 888776542 256789999876431 111 2478899999999
Q ss_pred EEEEEeCC---C--eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC--------------------------
Q 011224 215 LLATGSYD---G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-------------------------- 263 (490)
Q Consensus 215 ~l~sg~~d---g--~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-------------------------- 263 (490)
+|+.++.+ + .|.+|++.+.....+..+.. +..++|+|+|+.|+.++.+
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 99987754 3 47777877655444444444 9999999999998887643
Q ss_pred -CeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCC---------CeEEEEEcCCCcceeEecCCCCCeeEEEE
Q 011224 264 -KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQGEVNCVKW 333 (490)
Q Consensus 264 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 333 (490)
..|.+||+.+++....+.. . .+..+.|.++..++++..+ ..|++++ .+. ...+..+ ..+..+
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~-- 222 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV-- 222 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--
Confidence 5789999988876444444 3 5667777666544444332 2455555 333 3344444 455444
Q ss_pred cCCCCEEEEEeCC--------CeEEEEecCCCceeeeeccccccEEE-EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEe
Q 011224 334 DPTGSLLASCSDD--------VTAKIWNMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILASASFDSTVKLWD 404 (490)
Q Consensus 334 ~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~-v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd 404 (490)
+|+|+.|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++||
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg----------~~~~~~~~~~~~l~- 288 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK----------VYFTLFEEGSVNLY- 288 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE----------EEEEEEETTEEEEE-
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc----------EEEEEecCCcEEEE-
Confidence 9999998887754 3677787 55544444455667775 8897 64 57888899999999
Q ss_pred CCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcE-EEEEcCCCeE
Q 011224 405 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM-HIWSLKEGKI 452 (490)
Q Consensus 405 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i-~iw~~~~~~~ 452 (490)
+.+++.. .+..+...|.+++|+| .++++++.++.. .||.+. ++.
T Consensus 289 ~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~ 333 (347)
T 2gop_A 289 IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEE 333 (347)
T ss_dssp EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSE
T ss_pred EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcE
Confidence 8766654 4444577899999999 677777777665 777776 553
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=2.5e-17 Score=174.01 Aligned_cols=318 Identities=10% Similarity=0.109 Sum_probs=192.3
Q ss_pred eeeccccccc-----eeEEEECCCCCEEEEEECC---------CcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccC
Q 011224 135 VTILEGHTSE-----VCACAWSPAGSLLASGSGD---------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 200 (490)
Q Consensus 135 ~~~l~~H~~~-----V~~~~~sp~~~~l~sgs~D---------~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (490)
..++.+|... ...++|||||++|+.++.+ +.+.+||+.++... . ...+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~--------------~----l~~~ 110 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI--------------T----EERI 110 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC--------------C----SSCC
T ss_pred EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE--------------E----cccC
Confidence 3445666533 2447899999999999876 55679999876421 1 1123
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEe--cCCCCCE-----------------EEEEecCCCCEEEEEe
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL--SKHKGPI-----------------FSLKWNKKGDYLLTGS 261 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~--~~h~~~V-----------------~~l~~~~~~~~l~s~s 261 (490)
...+...+|||||+.|+.+. ++.|++|+..+.....+ .++...+ .++.|+|+|++|+.++
T Consensus 111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 45689999999999999884 78999999865443332 2333333 2489999999999888
Q ss_pred CCCe-EEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC---Cc--ceeEec------CCCCCee
Q 011224 262 CDKT-AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---NR--PIKTFA------GHQGEVN 329 (490)
Q Consensus 262 ~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~---~~--~~~~~~------~h~~~v~ 329 (490)
.|.+ +++|++....... .+......+.+..... ......|++|++.+ +. ....+. +|...+.
T Consensus 190 ~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~---~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 263 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLC 263 (740)
T ss_dssp EECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS---CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEE
T ss_pred EcccCCceEEEEeecCCC---CCCCcceeecCCCCcC---cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEE
Confidence 7665 8888763211000 0111122222221100 01122688999987 62 222333 4788899
Q ss_pred EEEEcCCCCEEEEEeC----CCeEEEEecCCCc----ee--eee--ccccccE-----EEEEEcCCCCCCCCCCCcEEEE
Q 011224 330 CVKWDPTGSLLASCSD----DVTAKIWNMKQDK----YV--HDL--REHSKEI-----YTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 330 ~v~~~~~~~~l~s~~~----dg~i~iwd~~~~~----~~--~~~--~~~~~~i-----~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
.++|+|||++++.... +..|.+||+.+++ +. ..+ ..+...+ ..+.|+|+|. .++.
T Consensus 264 ~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~--------~l~~ 335 (740)
T 4a5s_A 264 DVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN--------SFYK 335 (740)
T ss_dssp EEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS--------EEEE
T ss_pred EEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC--------EEEE
Confidence 9999999997665533 3479999998876 22 222 2344333 3678999986 2332
Q ss_pred EEE-CCC--cEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEE-EEeC----CCcEEEEEc--CCCeEEEEEec----
Q 011224 393 SAS-FDS--TVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA-SGSL----DKSMHIWSL--KEGKIVKTYTG---- 458 (490)
Q Consensus 393 sgs-~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~-s~s~----dg~i~iw~~--~~~~~~~~~~~---- 458 (490)
..+ .+| .|.+||+..+... .+......|..+.+ +|++.|+ +++. .+..+||.+ ..+.....++.
T Consensus 336 ~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~ 413 (740)
T 4a5s_A 336 IISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNP 413 (740)
T ss_dssp EEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTST
T ss_pred EEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCC
Confidence 444 444 5888888866544 44444555666542 3465554 4544 244555554 43333223332
Q ss_pred -CCCEEEEEECCCCCEEEEEECC---CcEEEEE
Q 011224 459 -NGGIFEVCWNKEGDKIAACFAN---HTVCVLD 487 (490)
Q Consensus 459 -~~~v~~~~~~~~g~~la~~~~d---~~v~v~~ 487 (490)
...+..++|+|+|++++....+ ..+.+++
T Consensus 414 ~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~ 446 (740)
T 4a5s_A 414 ERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHS 446 (740)
T ss_dssp TTBCBEEEEECTTSSEEEEEECSBSSCEEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCCCCEEEEEE
Confidence 2457899999999987765443 2455554
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=1.8e-15 Score=152.87 Aligned_cols=310 Identities=14% Similarity=0.086 Sum_probs=210.8
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011224 152 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN 231 (490)
Q Consensus 152 p~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~ 231 (490)
|.+.++++...++.|.++|..+++.. ..+.. ...+..+.|+|||+++++++.++.|.+||+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-------------~~i~~-----g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-------------TVLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-------------EEEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-------------EEEeC-----CCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 44557778888999999998876421 11111 2346789999999999999999999999983
Q ss_pred ---CceeEEecCCCCCEEEEEec----CCCCEEEEEeC-CCeEEEEEccCcceeEeeeeec----------c-CeEEEEc
Q 011224 232 ---GDLKCTLSKHKGPIFSLKWN----KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS----------G-PTLDVDW 292 (490)
Q Consensus 232 ---~~~~~~~~~h~~~V~~l~~~----~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~----------~-~~~~~~~ 292 (490)
......+.... ....++|+ |+|+++++++. +++|.++|..+.+.+..+.... . .+..+..
T Consensus 227 ~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 227 MKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 44455554433 35789999 69998876654 5999999999988877665321 1 2233332
Q ss_pred c--CCceEEEEcCCCeEEEEEcCCCcceeEe-cCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeeecc---
Q 011224 293 R--NNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLRE--- 365 (490)
Q Consensus 293 ~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~--- 365 (490)
. ....++.....+.|.+++.......... .........+.|+|+|++|+++. .+++|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 2 2233445566788888887664322211 12234566889999999876655 678999999999987665533
Q ss_pred --ccccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCCC-------CeEEEEeeCCCCCEEEEEECCCCCEEEE
Q 011224 366 --HSKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVEL-------GKLLYSLNGHREPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 366 --~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~spdg~~l~s 435 (490)
|.+....+ ++|++. .+++++. .+++|.++|... .+.+.++......-..|.++|++++|.+
T Consensus 386 ~Phpg~g~~~-~~p~~g--------~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFG--------PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp SBCCTTCEEE-EETTTE--------EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred CCCCccceee-ECCCCC--------cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence 22111122 356532 2455553 568999999987 6778888765433345789999999887
Q ss_pred EeC-------CCcEEEEEcCCC-----e-EEEEEe---------cCCCEEEEEECCCCCEEEEEEC-----CCcEEEEEe
Q 011224 436 GSL-------DKSMHIWSLKEG-----K-IVKTYT---------GNGGIFEVCWNKEGDKIAACFA-----NHTVCVLDF 488 (490)
Q Consensus 436 ~s~-------dg~i~iw~~~~~-----~-~~~~~~---------~~~~v~~~~~~~~g~~la~~~~-----d~~v~v~~~ 488 (490)
... .++|.+||+.+. . ....+. +...+..+.|+|+|+++..+.+ ++.|.|+|.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 653 359999999876 2 123332 2346899999999998776643 688999985
Q ss_pred e
Q 011224 489 R 489 (490)
Q Consensus 489 ~ 489 (490)
+
T Consensus 537 ~ 537 (567)
T 1qks_A 537 K 537 (567)
T ss_dssp T
T ss_pred C
Confidence 3
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=5.4e-16 Score=144.85 Aligned_cols=233 Identities=13% Similarity=0.119 Sum_probs=169.3
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 202 KDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 202 ~~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
....+++|+|+|+ +++++..++.|..|+..+. ...+..+...+.+++++|+++.+++...++.|.+||+.++++....
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA 106 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence 4577899999998 7888888999999998877 6667777888999999999998887777899999998777643211
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC---------------
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--------------- 345 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--------------- 345 (490)
.... . .....++.++++|+|+++++.+.
T Consensus 107 ~~~~------------------------------~-------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~ 149 (296)
T 3e5z_A 107 DSFE------------------------------G-------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEME 149 (296)
T ss_dssp CEET------------------------------T-------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCC
T ss_pred eccC------------------------------C-------CCCCCCCCEEECCCCCEEEECCcccccccccccccccc
Confidence 1000 0 01124667899999998887321
Q ss_pred --CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-CCeE---EEEeeCCCC
Q 011224 346 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-LGKL---LYSLNGHRE 419 (490)
Q Consensus 346 --dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~~~~---~~~~~~h~~ 419 (490)
.+.|..++.. ++ +..+..+......++|+|++. +|++.+.++.|.+|++. .++. ...+..+..
T Consensus 150 ~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~---------~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 218 (296)
T 3e5z_A 150 LPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGN---------LLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG 218 (296)
T ss_dssp SSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSC---------EEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS
T ss_pred CCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCC---------EEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC
Confidence 2345555544 33 334444556678999999986 45777788999999986 4544 233333455
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEE-CCCCCEEEEEECCCcEEEEE
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCW-NKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~-~~~g~~la~~~~d~~v~v~~ 487 (490)
.+..|+++++|+++++. ++.|.+|+.. |+.+..+.....+.+++| +|+++.|.+++.++ +..++
T Consensus 219 ~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~ 283 (296)
T 3e5z_A 219 KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIE 283 (296)
T ss_dssp CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEE
T ss_pred CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEE
Confidence 67789999999977766 7899999986 777777765444889999 68999999888764 44433
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=8e-14 Score=129.80 Aligned_cols=278 Identities=8% Similarity=0.031 Sum_probs=196.4
Q ss_pred cccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEE
Q 011224 139 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 218 (490)
Q Consensus 139 ~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~s 218 (490)
..+...+.+++++|+|.++++...++.|.+|+.. +.. ..... ......+.++++.++|.++++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~--------------~~~~~--~~~~~~~~~i~~~~~g~l~v~ 73 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI--------------TEYPL--PTPDAKVMCLTISSDGEVWFT 73 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE--------------EEEEC--SSTTCCEEEEEECTTSCEEEE
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe--------------EEecC--CcccCceeeEEECCCCCEEEe
Confidence 3455679999999999988877778899999975 321 01100 112356889999999998888
Q ss_pred EeCCCeEEEEECCCceeE-EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 219 GSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 219 g~~dg~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
...++.|..|+..+.... .+......+.++++.+++..+++...++.|.+||. ++.... +
T Consensus 74 ~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~----------------- 134 (299)
T 2z2n_A 74 ENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-Y----------------- 134 (299)
T ss_dssp ETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E-----------------
T ss_pred CCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-e-----------------
Confidence 777899999998754322 22234557899999999988887777889999987 443211 0
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee-eccccccEEEEEEc
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRWS 376 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~v~~~ 376 (490)
....+...+.++++.++|.++++...++.|..||. +++.... +......+..+++.
T Consensus 135 ----------------------~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~ 191 (299)
T 2z2n_A 135 ----------------------ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG 191 (299)
T ss_dssp ----------------------ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred ----------------------cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC
Confidence 00112345788999999998888777889999998 5554332 22334567889998
Q ss_pred CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE-EeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEE
Q 011224 377 PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 455 (490)
Q Consensus 377 p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~ 455 (490)
+++. ++++...++.|.+||. +++... .+..+...+.+|+++++|+++++...++.|.+|+. +++.. .
T Consensus 192 ~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~ 259 (299)
T 2z2n_A 192 NDDA---------LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-E 259 (299)
T ss_dssp TTSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-E
T ss_pred CCCC---------EEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-E
Confidence 8875 4555556789999999 665432 23345567899999999997777767889999998 56543 3
Q ss_pred Ee--c-CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 456 YT--G-NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 456 ~~--~-~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+. . ...+.++++ ++|++.++.. .+.|..++.+
T Consensus 260 ~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 260 YPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp EECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred EeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 32 2 245899999 9888777665 5677777754
No 180
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=1.3e-15 Score=146.32 Aligned_cols=270 Identities=11% Similarity=0.089 Sum_probs=177.4
Q ss_pred eeccccccceeEEEECCCCCEEEEEE----------CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeE
Q 011224 136 TILEGHTSEVCACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 205 (490)
Q Consensus 136 ~~l~~H~~~V~~~~~sp~~~~l~sgs----------~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 205 (490)
..+..+..+ .++|||||++|+++. .+++|.+||+.+.+... .+.....+ ........
T Consensus 45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~----------~i~~~~~~-~~~g~~p~ 111 (361)
T 2oiz_A 45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEK----------EISLPPKR-VQGLNYDG 111 (361)
T ss_dssp EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEE----------EEEECTTB-CCBCCCGG
T ss_pred EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEE----------EEEcCccc-cccCCCcc
Confidence 344455555 899999999999886 36789999987543211 11100000 00123456
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEECCCceeEEe-cCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEccC-cceeEee
Q 011224 206 TLDWNGEGTLLATGSY--DGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKT-EEWKQQF 280 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~~--dg~i~iw~~~~~~~~~~-~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~~-~~~~~~~ 280 (490)
.++|+|+|++|+++.. ++.|.+||+........ ..+. ....+.+.|.+ ..+++.+.||++.+|++.. ++.....
T Consensus 112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~ 190 (361)
T 2oiz_A 112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQS 190 (361)
T ss_dssp GEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEE
T ss_pred eEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeec
Confidence 7899999999998874 58999999876543322 2222 23445677766 6788899999999999865 4433111
Q ss_pred ------eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcc--eeEecC------CC----CCeeEEEEcCCCCEEEE
Q 011224 281 ------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFAG------HQ----GEVNCVKWDPTGSLLAS 342 (490)
Q Consensus 281 ------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~------h~----~~v~~v~~~~~~~~l~s 342 (490)
.....++......+...++..+.++.++++++..... +..+.- +. .....++|+|+++.++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv 270 (361)
T 2oiz_A 191 RSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV 270 (361)
T ss_dssp ECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE
T ss_pred cccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE
Confidence 1111111100011223444455678899999865432 111110 00 11123789999887665
Q ss_pred EeC-----------CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC--e
Q 011224 343 CSD-----------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG--K 409 (490)
Q Consensus 343 ~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~--~ 409 (490)
+.. .+.|.+||+.+++.+..+..+. ...++|+|+|. +|++++. +.|.+||..++ +
T Consensus 271 ~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~---------~l~v~n~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 271 FMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN---------LMLTLDG-GNVNVYDISQPEPK 338 (361)
T ss_dssp EEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT---------EEEEECS-SCEEEEECSSSSCE
T ss_pred EEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC---------EEEEeCC-CeEEEEECCCCcce
Confidence 532 3589999999999999888766 89999999986 5666665 99999999999 9
Q ss_pred EEEEeeCCCCCEEEEEECCCCC
Q 011224 410 LLYSLNGHREPVYSLAFSPTGE 431 (490)
Q Consensus 410 ~~~~~~~h~~~v~~l~~spdg~ 431 (490)
.+.++..+......++|+|+|.
T Consensus 339 ~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 339 LLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEeccCCCCcEEEEecCCCC
Confidence 9988866777789999999986
No 181
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.74 E-value=2e-16 Score=164.99 Aligned_cols=237 Identities=11% Similarity=0.036 Sum_probs=168.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEE--eCCCeEEEEEC-CCceeEEecCCCCCEE---------EEEec--CCCCE-EEEEeC-
Q 011224 199 EKSKDVTTLDWNGEGTLLATG--SYDGQARIWST-NGDLKCTLSKHKGPIF---------SLKWN--KKGDY-LLTGSC- 262 (490)
Q Consensus 199 ~~~~~V~~~~~s~~~~~l~sg--~~dg~i~iw~~-~~~~~~~~~~h~~~V~---------~l~~~--~~~~~-l~s~s~- 262 (490)
.+...|..++|++++.++++. +.++...||.. .+.....+..|...+. ...|+ |+|++ |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 346779999999988788877 56888999983 4444556666766655 55565 99988 665443
Q ss_pred CCeEEEEEcc--C-cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC-----CCCCeeEEEEc
Q 011224 263 DKTAIVWDVK--T-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-----HQGEVNCVKWD 334 (490)
Q Consensus 263 D~~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-----h~~~v~~v~~~ 334 (490)
+..|.+|++. + +.. ..+.. |...+.+++|+
T Consensus 101 ~~~l~~~~~~~~g~~~~------------------------------------------~~l~~~~~~~~~~~~~~~~~s 138 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVP------------------------------------------RPLTPVSAVGGGLRWADPVLL 138 (662)
T ss_dssp TCCEEEECTTSTTCCCC------------------------------------------EECSCCCCSTTCEEEEEEEEE
T ss_pred CCeEEEEcCCCCCCCCC------------------------------------------EeccCCccCCCCccccCcEEC
Confidence 4455555543 1 221 11222 45567899999
Q ss_pred CCCCEEEEEeCC----------CeEEEEecCC------Cceeeeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECC
Q 011224 335 PTGSLLASCSDD----------VTAKIWNMKQ------DKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397 (490)
Q Consensus 335 ~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d 397 (490)
|||+.|++++.+ ..|.+||+.+ +.. ..+. .+...+..++|+|+|. .|+.++.+
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~---------~la~~~~~ 208 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGR---------QAVWLAWD 208 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSS---------EEEEEEEC
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCC---------EEEEEECC
Confidence 999999998877 5899999987 443 3444 5556778899999997 56666544
Q ss_pred --------CcEEEEeCC-CC---eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC--cEEEEEcCCCeEEEEEecCCC--
Q 011224 398 --------STVKLWDVE-LG---KLLYSLNGHREPVYSLAFSPTGEYLASGSLDK--SMHIWSLKEGKIVKTYTGNGG-- 461 (490)
Q Consensus 398 --------g~i~iwd~~-~~---~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg--~i~iw~~~~~~~~~~~~~~~~-- 461 (490)
..|++||+. ++ +......+|...+..++|+|||+++++++.++ .|.+|++.+++......++..
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred CCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 379999998 56 44444445678899999999999888888888 566667667765544333221
Q ss_pred -------EEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 462 -------IFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 462 -------v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
+..++|+|++.+++++.. +.+.||.+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 457889999999999988 88888844
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=1.6e-15 Score=144.17 Aligned_cols=266 Identities=11% Similarity=0.052 Sum_probs=179.7
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
..|.+++|+|++..+++.+.++.++.|.-. ....+. .+...+.+++|+++|++++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~ 65 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE----------------PWLEIS----KKGLQLEGLNFDRQGQLFLLDVFE 65 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE----------------EEEEEE----SSCCCEEEEEECTTSCEEEEETTT
T ss_pred cccceeeecCCccceeEEeecccCcccccc----------------eeEEEe----ccCccccCcEECCCCCEEEEECCC
Confidence 347788899998888877888999999311 111111 123457899999999988888899
Q ss_pred CeEEEEECCCceeEEe-cCCCCCEEEEEecCCCCEEEEEeCC----CeEEEEEccCcceeEeee--eeccCeEEEEccCC
Q 011224 223 GQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNN 295 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~ 295 (490)
+.|.+|+..+.....+ ..+...+.+++|+|+++.+++...+ +.|.+||+.++.....+. .....+..+.+..+
T Consensus 66 ~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence 9999999876544333 3566789999999999888877766 689999998876543332 12234566666554
Q ss_pred ceE-EEEcC------CCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEE-EEEeCCCeEEEEecCC-Cceeee----
Q 011224 296 VSF-ATSST------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQ-DKYVHD---- 362 (490)
Q Consensus 296 ~~~-~~~~~------d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~dg~i~iwd~~~-~~~~~~---- 362 (490)
..+ ++... .+.|+.++....... .+..+...+.+++|+|+++.+ ++.+.++.|.+|++.+ +..+..
T Consensus 146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~ 224 (333)
T 2dg1_A 146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT 224 (333)
T ss_dssp SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE
T ss_pred CCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce
Confidence 444 44332 245666665443332 232333457899999999855 5556688999999864 332221
Q ss_pred ----eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC------CEEEEEECCCCCE
Q 011224 363 ----LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE------PVYSLAFSPTGEY 432 (490)
Q Consensus 363 ----~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~------~v~~l~~spdg~~ 432 (490)
+..+ ..+..++++++|. ++++...++.|.+||. .++.+..+..+.. .+.+++|+|++..
T Consensus 225 ~~~~~~~~-~~~~~i~~d~~G~---------l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~ 293 (333)
T 2dg1_A 225 IPYYFTGH-EGPDSCCIDSDDN---------LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ 293 (333)
T ss_dssp EEEECCSS-SEEEEEEEBTTCC---------EEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred EEEecCCC-CCCCceEECCCCC---------EEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCE
Confidence 1111 3567889998885 5666667889999998 4666666654432 6899999999877
Q ss_pred EEEEeCCC
Q 011224 433 LASGSLDK 440 (490)
Q Consensus 433 l~s~s~dg 440 (490)
|+.++.++
T Consensus 294 L~v~~~~g 301 (333)
T 2dg1_A 294 LIICSNDI 301 (333)
T ss_dssp EEEEEECG
T ss_pred EEEEeCcc
Confidence 76555443
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=2.6e-15 Score=157.86 Aligned_cols=254 Identities=11% Similarity=0.119 Sum_probs=164.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcce
Q 011224 202 KDVTTLDWNGEGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg-----~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 276 (490)
..+..++|||||++|+.+..++ .|++|++.+............+.+++|+|+|+.|+.++.++. ....
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~-------~~~~ 197 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQ-------DGKS 197 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCC-------SSCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCc-------cccc
Confidence 3588999999999998776543 899999876544332222223567999999999998887754 0000
Q ss_pred eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcc--eeEec--CCCCCeeEEEEcCCCCEEEEEeC-----CC
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DV 347 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~--~h~~~v~~v~~~~~~~~l~s~~~-----dg 347 (490)
.+... .......|++|++.++.. ...+. .|...+..+.|+|||++|+.++. +.
T Consensus 198 -------~~~~~-----------~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 198 -------DGTET-----------STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVN 259 (710)
T ss_dssp -------SSSCC-----------CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCC
T ss_pred -------ccccc-----------ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCcc
Confidence 00000 001112345555544331 12222 24556788999999999887765 56
Q ss_pred eEEEEecCC------Cc-eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC---CCcEEEEeCCCCe--EEEEee
Q 011224 348 TAKIWNMKQ------DK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGK--LLYSLN 415 (490)
Q Consensus 348 ~i~iwd~~~------~~-~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~---dg~i~iwd~~~~~--~~~~~~ 415 (490)
.|.+||+.+ +. ....+..+...+.. .|+|+|. .+++.+.. .+.|.+||+.++. ....+.
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~--------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGT--------VFTFKTNRHSPNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCC--------EEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence 899999976 42 34455555544444 4777775 23333333 3369999998764 223444
Q ss_pred CCCC--CEEEEEECCCCCEEEEEeCCCc--EEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEEEEEC----CCcEEEE
Q 011224 416 GHRE--PVYSLAFSPTGEYLASGSLDKS--MHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFA----NHTVCVL 486 (490)
Q Consensus 416 ~h~~--~v~~l~~spdg~~l~s~s~dg~--i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la~~~~----d~~v~v~ 486 (490)
.|.. .+..++|++++.+++++..|+. |.+|++.+|+.+..+..+ +.+..++++|+++.|+.... .++|.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~ 410 (710)
T 2xdw_A 331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC 410 (710)
T ss_dssp CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence 4544 6888999988888899988885 566777678877777654 44788999999987775433 3678888
Q ss_pred Eee
Q 011224 487 DFR 489 (490)
Q Consensus 487 ~~~ 489 (490)
|+.
T Consensus 411 d~~ 413 (710)
T 2xdw_A 411 DLT 413 (710)
T ss_dssp ETT
T ss_pred ECC
Confidence 863
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.72 E-value=3.4e-15 Score=156.87 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=168.8
Q ss_pred ccccceeEEEECCCCCEEEEEECCC-----cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 140 GHTSEVCACAWSPAGSLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 140 ~H~~~V~~~~~sp~~~~l~sgs~D~-----~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
+|...+.+++|||||++||.++.++ .|++||+.++... .. .... ..+..++|+|||+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-----------~~-~~~~------~~~~~~~wspDg~ 183 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-----------PD-VLER------VKFSCMAWTHDGK 183 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-----------EE-EEEE------ECSCCEEECTTSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-----------cc-cccC------cccceEEEEeCCC
Confidence 4666789999999999988766443 8999999876421 00 0000 1256789999999
Q ss_pred EEEEEeCCCe----------------EEEEECCCce---eEEec--CCCCCEEEEEecCCCCEEEEEeC-----CCeEEE
Q 011224 215 LLATGSYDGQ----------------ARIWSTNGDL---KCTLS--KHKGPIFSLKWNKKGDYLLTGSC-----DKTAIV 268 (490)
Q Consensus 215 ~l~sg~~dg~----------------i~iw~~~~~~---~~~~~--~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~i 268 (490)
.|+.++.++. |++|++.+.. ...+. .|...+.++.|+|+|++|+.++. +..|++
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 9999988766 9999986533 22222 35566889999999999887765 456777
Q ss_pred EEccC------cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEE
Q 011224 269 WDVKT------EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 342 (490)
Q Consensus 269 wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s 342 (490)
||+.+ +.. ....+..+...+.. .|+|+|..|+.
T Consensus 264 ~d~~~~~~~~~~~~----------------------------------------~~~~l~~~~~~~~~-~~s~dg~~l~~ 302 (710)
T 2xdw_A 264 CDLQQESNGITGIL----------------------------------------KWVKLIDNFEGEYD-YVTNEGTVFTF 302 (710)
T ss_dssp EEGGGSSSSSCSSC----------------------------------------CCEEEECSSSSCEE-EEEEETTEEEE
T ss_pred EECcccccccCCcc----------------------------------------ceEEeeCCCCcEEE-EEeccCCEEEE
Confidence 77754 210 11222333333333 47888887776
Q ss_pred EeCC----CeEEEEecCCCce--eeeeccccc--cEEEEEEcCCCCCCCCCCCcEEEEEEECCCc--EEEEeCCCCeEEE
Q 011224 343 CSDD----VTAKIWNMKQDKY--VHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILASASFDST--VKLWDVELGKLLY 412 (490)
Q Consensus 343 ~~~d----g~i~iwd~~~~~~--~~~~~~~~~--~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~--i~iwd~~~~~~~~ 412 (490)
.+.. +.|.+||+.++.. ...+..+.. .+..+.|++.+. ++++...++. |.+|++.+++.+.
T Consensus 303 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------lv~~~~~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 303 KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF---------LVLCYLHDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE---------EEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE---------EEEEEEECCEEEEEEEECCCCCEEE
Confidence 6653 3699999987642 344444433 577888886543 7788888885 5667776788778
Q ss_pred EeeCCCCCEEEEEECCCCCEEE-EEe---CCCcEEEEEcCCCe
Q 011224 413 SLNGHREPVYSLAFSPTGEYLA-SGS---LDKSMHIWSLKEGK 451 (490)
Q Consensus 413 ~~~~h~~~v~~l~~spdg~~l~-s~s---~dg~i~iw~~~~~~ 451 (490)
.+..+...|..++++|++..|+ +.+ ..++|.+||+.+++
T Consensus 374 ~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 374 IFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8887878899999999997665 333 34789999998876
No 185
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=2.4e-15 Score=145.99 Aligned_cols=247 Identities=11% Similarity=0.008 Sum_probs=169.3
Q ss_pred CceeEEecCCCCCEEE-----EEecCCCCEEEEEeC-CC--eEEEEEccCcceeEeeeeeccCeEEEEccC-CceEEEEc
Q 011224 232 GDLKCTLSKHKGPIFS-----LKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSS 302 (490)
Q Consensus 232 ~~~~~~~~~h~~~V~~-----l~~~~~~~~l~s~s~-D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 302 (490)
+.....+..|...+.. .+|+|+|++|+.++. ++ .|.+||+.+++.......+...+....|.+ ...++.++
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 4455667777766666 789999999988887 66 488889998887766655554444455654 45677777
Q ss_pred CCCeEEEEEcCCCcceeEecCCCCCeeEEE--EcCCCCEEEEE----------------------eCCCeEEEEecCCCc
Q 011224 303 TDNMIYVCKIGENRPIKTFAGHQGEVNCVK--WDPTGSLLASC----------------------SDDVTAKIWNMKQDK 358 (490)
Q Consensus 303 ~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~--~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~ 358 (490)
.++.+++|++.++.....+..+...+.... ++|++++++.. ..+..|.+||+.+++
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred CCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 788999999998887766666666554444 48999988743 245789999998886
Q ss_pred eeeeeccccccEEEEEEcC-CCCCCCCCCCcEEEEEEECC------CcEEEEeCCCCeEEEEeeCCC--CCEEEEEECCC
Q 011224 359 YVHDLREHSKEIYTIRWSP-TGSGTNNPNQQLILASASFD------STVKLWDVELGKLLYSLNGHR--EPVYSLAFSPT 429 (490)
Q Consensus 359 ~~~~~~~~~~~i~~v~~~p-~g~~~~~~~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~h~--~~v~~l~~spd 429 (490)
.. .+..+...+..+.|+| +|. .|+..+.+ ..|.++|...+.. ..+..+. ..+..++||||
T Consensus 180 ~~-~l~~~~~~~~~~~~sp~dg~---------~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spd 248 (388)
T 3pe7_A 180 ST-VILQENQWLGHPIYRPYDDS---------TVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPD 248 (388)
T ss_dssp EE-EEEEESSCEEEEEEETTEEE---------EEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTT
T ss_pred eE-EeecCCccccccEECCCCCC---------EEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCC
Confidence 43 3445566789999999 885 45555543 3788888765443 3444444 35788999999
Q ss_pred CCEEEEEeCC-C----cEEEEEcCCCeEEEEEecCC--C----EEEEEECCCCCEEEEE---------ECCCcEEEEEee
Q 011224 430 GEYLASGSLD-K----SMHIWSLKEGKIVKTYTGNG--G----IFEVCWNKEGDKIAAC---------FANHTVCVLDFR 489 (490)
Q Consensus 430 g~~l~s~s~d-g----~i~iw~~~~~~~~~~~~~~~--~----v~~~~~~~~g~~la~~---------~~d~~v~v~~~~ 489 (490)
|+.|+..+.+ + .|++||+.+++........+ . ...++|+|||+.|+.. ..+..|.+||+.
T Consensus 249 g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 249 GSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp SSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred CCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 9988654432 2 39999999987533222111 0 1123799999988864 345689999864
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.70 E-value=2e-14 Score=134.15 Aligned_cols=259 Identities=14% Similarity=0.095 Sum_probs=167.0
Q ss_pred eeeccccccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 135 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 135 ~~~l~~H~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
+..+..+.....+++|+|+|+ +++++..++.|.+|+..++ . ..+. .+...+.+++|+++|
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~--------------~~~~----~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L--------------SPEM----HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E--------------EEEE----SSCSSEEEEEECTTC
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e--------------EEEE----CCCCCcceeeECCCC
Confidence 345556667788999999998 7888888999999997643 1 1111 124568999999999
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEEecCC----CCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 214 TLLATGSYDGQARIWSTN-GDLKCTLSKH----KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~-~~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
+++++...++.|.+|+.. +......... ...+..++++|+|+.+++.+..++...+......
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~------------- 147 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE------------- 147 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC-------------
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc-------------
Confidence 988887778999999984 4433222211 1245678899999887773321110000000000
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecC-CCce---eeeec
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKY---VHDLR 364 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~ 364 (490)
.....+.|+.++.. ..+..+..+....+.++|+|+++++++.+.++.|.+|++. .+.. ...+.
T Consensus 148 -----------~~~~~~~l~~~~~~--g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~ 214 (296)
T 3e5z_A 148 -----------MELPGRWVFRLAPD--GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFT 214 (296)
T ss_dssp -----------CCSSSCEEEEECTT--SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEEC
T ss_pred -----------ccCCCcEEEEECCC--CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEee
Confidence 00000112222211 1122233445567899999999988888888999999987 4443 22222
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEE-CCCCCEEEEEeCCCcEE
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAF-SPTGEYLASGSLDKSMH 443 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-spdg~~l~s~s~dg~i~ 443 (490)
.+...+..++++++|. ++++. ++.|.+||.. ++.+..+..+.. +++++| +|+++.|++++.++ +.
T Consensus 215 ~~~~~p~~i~~d~~G~---------l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~ 280 (296)
T 3e5z_A 215 VEPGKTDGLRVDAGGL---------IWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FW 280 (296)
T ss_dssp CSSSCCCSEEEBTTSC---------EEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EE
T ss_pred CCCCCCCeEEECCCCC---------EEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EE
Confidence 2344456788888885 34433 7899999987 778878877766 899999 68999998888764 55
Q ss_pred EEEcCCCeE
Q 011224 444 IWSLKEGKI 452 (490)
Q Consensus 444 iw~~~~~~~ 452 (490)
-++..+.++
T Consensus 281 ~~~~~~~~~ 289 (296)
T 3e5z_A 281 SIETNVRGL 289 (296)
T ss_dssp EEECSCCBC
T ss_pred EEEcccccc
Confidence 566666554
No 187
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=2.7e-14 Score=135.31 Aligned_cols=280 Identities=11% Similarity=0.038 Sum_probs=190.0
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-ceeEEecC
Q 011224 162 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSK 240 (490)
Q Consensus 162 ~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~-~~~~~~~~ 240 (490)
.+++|.+||..+++...... ....+ .........+++. +++++++...++.|.+||... ....++.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~---------~~~n~--~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~- 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVF---------YRANG--FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT- 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHH---------HHHHS--SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-
T ss_pred CCceEEEEECCCCEEhhhhH---------hhhcC--cccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-
Confidence 48899999988764211100 00000 0111235667764 345556666689999999874 4445554
Q ss_pred CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeecc-----CeEEEEccCCceEEEEc-CCCeEEEEEcCC
Q 011224 241 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVSFATSS-TDNMIYVCKIGE 314 (490)
Q Consensus 241 h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~d~~i~~~~~~~ 314 (490)
.......+++++++..+++...++.|.+||+.+++....+..... ....+.+.....+++.. .++.|.+++..+
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t 161 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTET 161 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCC
Confidence 345678999999884444444899999999999987776654330 22334445555566655 488999999998
Q ss_pred CcceeEecCCCCCeeEEEEcCCCCEEEEEeCC----------CeEEEEecCCCceeeeeccc-cccEEEEEEcCCCCCCC
Q 011224 315 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTN 383 (490)
Q Consensus 315 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~p~g~~~~ 383 (490)
.+.+..+... .....++++|+|++++++..+ +.|.+||..+++....+... ......++++|++.
T Consensus 162 ~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~--- 237 (328)
T 3dsm_A 162 DKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD--- 237 (328)
T ss_dssp TEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC---
T ss_pred CeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC---
Confidence 8877666542 335688999999988777665 78999999988877665432 23578999999875
Q ss_pred CCCCcEEEEEEECCCcEEEEeCCCCeEEEE--eeCCCCCEEEEEECC-CCCEEEEE----eCCCcEEEEEcCCCeEEEEE
Q 011224 384 NPNQQLILASASFDSTVKLWDVELGKLLYS--LNGHREPVYSLAFSP-TGEYLASG----SLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 384 ~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~sp-dg~~l~s~----s~dg~i~iw~~~~~~~~~~~ 456 (490)
.|..+.. .|.+||..+++.... +.........++++| ++.++++. ..++.|.+|+.. |+++.++
T Consensus 238 ------~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 238 ------TLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp ------EEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred ------EEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 3444433 899999988775311 221235688999999 55666666 678999999998 9998888
Q ss_pred ecCCCEEEEEE
Q 011224 457 TGNGGIFEVCW 467 (490)
Q Consensus 457 ~~~~~v~~~~~ 467 (490)
........++|
T Consensus 309 ~~G~~P~~~~~ 319 (328)
T 3dsm_A 309 YVGIIPGAFCW 319 (328)
T ss_dssp EEEESEEEEEE
T ss_pred EeccCcceEEE
Confidence 65555666666
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=1.3e-15 Score=159.63 Aligned_cols=245 Identities=10% Similarity=0.050 Sum_probs=163.7
Q ss_pred cccccceeEEEECCCCCEEE-----EEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 139 EGHTSEVCACAWSPAGSLLA-----SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 139 ~~H~~~V~~~~~sp~~~~l~-----sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
.+|...+.+++|||||++|| +|+.+..|++||+.++..... .+.. ......++|+|||
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~---------------~~~~--~~~~~~~~wspDg 179 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV---------------DVIE--GGKYATPKWTPDS 179 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS---------------CCBS--CCTTCCCEECTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC---------------cccC--cccccceEEecCC
Confidence 35777899999999999988 455567899999988753200 0000 0112578999999
Q ss_pred CEEEEEeCCCe-------------EEEEECCCce-----eEEecCCCCCEEEEEecCCCCEEEEEeCCC----eEEEEEc
Q 011224 214 TLLATGSYDGQ-------------ARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----TAIVWDV 271 (490)
Q Consensus 214 ~~l~sg~~dg~-------------i~iw~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~----~v~iwd~ 271 (490)
+.|+.++.+.. |++|++.+.. +.....|...+.++.|+|+|++|+.++.++ .|++|+.
T Consensus 180 ~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 180 KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECT
T ss_pred CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcC
Confidence 99999998876 9999986532 222334566889999999999998887766 6777776
Q ss_pred cCcceeEeeeeeccCeEEEEccCCceEEEEc---CCCeEEEEEcCCCcc--eeEecCC--CCCeeEEEEcCCCCEEEEEe
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP--IKTFAGH--QGEVNCVKWDPTGSLLASCS 344 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~~~~~~~~--~~~~~~h--~~~v~~v~~~~~~~~l~s~~ 344 (490)
.++.+... ..+........+.++..++.+. .++.|++|++..... ...+..| ...+..++|+ ++.++++..
T Consensus 260 ~~~~~~~l-~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 260 GEKDFRLL-VKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp TCSSCEEE-EECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred CCCceEEe-ecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 65554433 3333333333344444334443 357899999876543 2333333 4467888988 778899999
Q ss_pred CCCeEEEEecC-CCceeeeeccc-cccEEEEEEcCCCCCCCCCCCcEEEEEEE---CCCcEEEEeCCCCeE
Q 011224 345 DDVTAKIWNMK-QDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL 410 (490)
Q Consensus 345 ~dg~i~iwd~~-~~~~~~~~~~~-~~~i~~v~~~p~g~~~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~ 410 (490)
.|+..+||.+. .++....+..+ ...+..+.++|++. .++++.+ ..++|++||+.+++.
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~--------~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD--------DAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS--------EEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC--------EEEEEEcCCCCCCEEEEEECCCCcE
Confidence 99998888664 34445555444 45566677777653 2333333 246899999988764
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.68 E-value=1.5e-14 Score=132.92 Aligned_cols=235 Identities=8% Similarity=-0.028 Sum_probs=162.4
Q ss_pred CEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCC-ceEEEEcCCCeEEEEEcCCCcceeEe
Q 011224 244 PIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTF 321 (490)
Q Consensus 244 ~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~ 321 (490)
...+++++++++.++ +.+.++.|.+||..+.............+..+.+..+ ..+++.. ++.|++|+....... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 568999999998777 5577899999997665432221122233445555433 3445555 888999987665432 23
Q ss_pred c-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcE
Q 011224 322 A-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 400 (490)
Q Consensus 322 ~-~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i 400 (490)
. .....+.+++++|+|+++++...++.|.+|+..+.............+..++++|++. ++++...++.|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~---------l~v~~~~~~~i 173 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN---------VYVTDTDNNRV 173 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC---------EEEEEGGGTEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC---------EEEEECCCCEE
Confidence 2 2335688999999999888888889999998655443322222233567788888774 55666667899
Q ss_pred EEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe-cCCCEEEEEECCCCCEEEEEEC
Q 011224 401 KLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 401 ~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~~g~~la~~~~ 479 (490)
.+||............+...+..|+++++|.++++...++.|.+|+........... +...+.+++++|+|+++++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 999988766544333344678999999999888887788999999987654433221 2245899999999998889999
Q ss_pred CCcEEEEEee
Q 011224 480 NHTVCVLDFR 489 (490)
Q Consensus 480 d~~v~v~~~~ 489 (490)
+++|.+|++.
T Consensus 254 ~~~v~~~~~~ 263 (270)
T 1rwi_B 254 NDRVVKLTSL 263 (270)
T ss_dssp GTEEEEECCC
T ss_pred CCEEEEEcCC
Confidence 9999999764
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=2.7e-15 Score=157.18 Aligned_cols=240 Identities=10% Similarity=-0.008 Sum_probs=158.4
Q ss_pred CCCCeEEEEEcCCCCEEE-----EEeCCCeEEEEECCCceeEEecCCCCCE--EEEEecCCCCEEEEEeCCCe-------
Q 011224 200 KSKDVTTLDWNGEGTLLA-----TGSYDGQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCDKT------- 265 (490)
Q Consensus 200 ~~~~V~~~~~s~~~~~l~-----sg~~dg~i~iw~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~D~~------- 265 (490)
+...+..++|||||++|+ +|+.+..|++||+.+..... ..+...+ ..++|+|+|+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 344688999999999998 44445789999987654320 1122222 67899999999999888765
Q ss_pred ------EEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCE
Q 011224 266 ------AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 339 (490)
Q Consensus 266 ------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 339 (490)
|++|++.++.... ..+.....|...+.++.|+|||++
T Consensus 198 ~~~~~~v~~~~l~t~~~~~-------------------------------------~lv~~~~~~~~~~~~~~~SpDG~~ 240 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKD-------------------------------------TVVHERTGDPTTFLQSDLSRDGKY 240 (695)
T ss_dssp GGGGCEEEEEETTSCGGGC-------------------------------------EEEECCCCCTTCEEEEEECTTSCC
T ss_pred CCCCCEEEEEECCCCchhc-------------------------------------eEEEecCCCCEEEEEEEECCCCCE
Confidence 6666655432100 011122234557889999999999
Q ss_pred EEEEeCCC----eEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE---CCCcEEEEeCCCCeE--
Q 011224 340 LASCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---FDSTVKLWDVELGKL-- 410 (490)
Q Consensus 340 l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs---~dg~i~iwd~~~~~~-- 410 (490)
|+.++.++ .|.+|+..++. ...+..+...+....| +++ . ++++.. .++.|.+||+.++..
T Consensus 241 l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g--------~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 241 LFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD--------R-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT--------E-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC--------c-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 88877665 67777655443 3334444445555555 444 2 344444 358899999987652
Q ss_pred EEEeeCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeEEEEEec--CCCEEEEEECCCCCEEEEEEC----CC
Q 011224 411 LYSLNGH--REPVYSLAFSPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAACFA----NH 481 (490)
Q Consensus 411 ~~~~~~h--~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~-~~~~~~~~~~--~~~v~~~~~~~~g~~la~~~~----d~ 481 (490)
...+..+ ...|..++|+ ++.+++++..|+..+||.+. +|+.+..+.. .+.+..++++|+++.|+.... .+
T Consensus 310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 388 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPR 388 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEE
T ss_pred CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 2233333 4568889998 67888899999998888765 4665555543 345778899999987775433 36
Q ss_pred cEEEEEee
Q 011224 482 TVCVLDFR 489 (490)
Q Consensus 482 ~v~v~~~~ 489 (490)
+|.+||+.
T Consensus 389 ~v~~~d~~ 396 (695)
T 2bkl_A 389 QIYKTSVS 396 (695)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 78888863
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.67 E-value=5.2e-14 Score=129.63 Aligned_cols=242 Identities=14% Similarity=0.143 Sum_probs=176.1
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011224 153 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 232 (490)
Q Consensus 153 ~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~ 232 (490)
.+++|++++.|+.|.+||..+++.. ..+..+ ....+.+++++|+|++++ +.++.|+.|+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~-------------w~~~~~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIV-------------WEYPLE---KGWECNSVAATKAGEILF--SYSKGAKMITRDG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEE-------------EEEECC---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEE-------------EEeCCC---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCC
Confidence 4688999999999999998777521 112111 113578899999999998 4578899999988
Q ss_pred ceeEEecCC-CCCEEEEEecCCCCEEEEEeC-CCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEE
Q 011224 233 DLKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 310 (490)
Q Consensus 233 ~~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~ 310 (490)
+.+..+..+ ...+.++.+.++|+++++.+. ++.|..+|. +++.+..+..
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~---------------------------- 116 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEF---------------------------- 116 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEE----------------------------
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEec----------------------------
Confidence 888777764 357889999999999999887 777877775 4544433321
Q ss_pred EcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEE
Q 011224 311 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390 (490)
Q Consensus 311 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~ 390 (490)
... ..++......+++.++|+++++.+.++.|.+||.. ++.+.++... ...+++...+++. +
T Consensus 117 --~~~-----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~---------~ 178 (276)
T 3no2_A 117 --ETG-----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGD---------C 178 (276)
T ss_dssp --CCS-----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSC---------E
T ss_pred --cCC-----CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCC---------E
Confidence 100 01111234456778999999999999999999988 8888877654 3445666777775 6
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeeCCC------CCEEEEEECCCCCEEEEEe--CC------CcEEEEEc-CCCeEEEE
Q 011224 391 LASASFDSTVKLWDVELGKLLYSLNGHR------EPVYSLAFSPTGEYLASGS--LD------KSMHIWSL-KEGKIVKT 455 (490)
Q Consensus 391 l~sgs~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~spdg~~l~s~s--~d------g~i~iw~~-~~~~~~~~ 455 (490)
+++++.++.|..+|..+|+.++++..+. ..+..++..++|.++++.. .. +..+++.+ .+|+++..
T Consensus 179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence 7777778899999999999999986432 2378899999999988874 21 23456666 57888888
Q ss_pred EecC
Q 011224 456 YTGN 459 (490)
Q Consensus 456 ~~~~ 459 (490)
+...
T Consensus 259 ~~~~ 262 (276)
T 3no2_A 259 LNDK 262 (276)
T ss_dssp ECCT
T ss_pred ecCc
Confidence 8654
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.3e-14 Score=131.64 Aligned_cols=239 Identities=8% Similarity=-0.019 Sum_probs=166.2
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEECCCceeEEe-cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 203 DVTTLDWNGEGTLLA-TGSYDGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~-sg~~dg~i~iw~~~~~~~~~~-~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
...+++++++|++++ +...++.|.+|+..+.....+ ..+...+.++++.++++.+++.. ++.|.+||..+.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 578899999999777 547789999998765433322 23335678899999998666655 889999998765443221
Q ss_pred eeeccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 281 EFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 281 ~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
......+..+.+.. ...+++...++.|++++................+.+++++++|+++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 11223455666653 34566666778898887655443322223334678999999999888887889999999877655
Q ss_pred eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 360 ~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
..........+..++++++|. ++++...++.|.+|+............+...+.+|+++|+|+++++.+.+
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~---------l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGT---------VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCC---------EEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred EeecccCCCCceEEEECCCCC---------EEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 433333335678999999874 56666678899999987654433222334568999999999988999999
Q ss_pred CcEEEEEcCCCe
Q 011224 440 KSMHIWSLKEGK 451 (490)
Q Consensus 440 g~i~iw~~~~~~ 451 (490)
+.|++|++...+
T Consensus 255 ~~v~~~~~~~~~ 266 (270)
T 1rwi_B 255 DRVVKLTSLEHH 266 (270)
T ss_dssp TEEEEECCCGGG
T ss_pred CEEEEEcCCCcc
Confidence 999999987544
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.66 E-value=4.8e-14 Score=129.83 Aligned_cols=212 Identities=18% Similarity=0.133 Sum_probs=162.5
Q ss_pred CCCEEEEEeCCCeEEEEEC-CCceeEEecCCC-CCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEE
Q 011224 212 EGTLLATGSYDGQARIWST-NGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~-~~~~~~~~~~h~-~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (490)
.+++|++++.++.|.+||. +++....+..+. ..+.++.+.|+|+.|+ +.++.|..||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~------- 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA------- 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-------
Confidence 4688999999999999998 777778887765 4678999999999888 34778999998 6654433221
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEEEEecCCCceeeeecc---
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE--- 365 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~--- 365 (490)
+....+.++.+.|+|+++++.+. ++.|..+|. .++.+..+..
T Consensus 74 ---------------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~ 119 (276)
T 3no2_A 74 ---------------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG 119 (276)
T ss_dssp ---------------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS
T ss_pred ---------------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC
Confidence 01124667888999999998887 777877875 5666555431
Q ss_pred ---ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcE
Q 011224 366 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 366 ---~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
+......+++.++|. ++++.+.++.|..||.. |+.++++... ..+.++.+.++|.+|++++.++.|
T Consensus 120 ~~~~~~~~~~v~~~~~G~---------~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v 188 (276)
T 3no2_A 120 IERPHAQFRQINKNKKGN---------YLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCF 188 (276)
T ss_dssp CSSGGGSCSCCEECTTSC---------EEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEE
T ss_pred CCcccccccCceECCCCC---------EEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeE
Confidence 112233445566664 77888899999999998 9999998865 345678889999999999989999
Q ss_pred EEEEcCCCeEEEEEecC-------CCEEEEEECCCCCEEEEEE
Q 011224 443 HIWSLKEGKIVKTYTGN-------GGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 443 ~iw~~~~~~~~~~~~~~-------~~v~~~~~~~~g~~la~~~ 478 (490)
..||..+|+++..+... ..+..++..++|+++++.+
T Consensus 189 ~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 189 VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 99999999999888632 1278899999999988875
No 194
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.65 E-value=3e-12 Score=119.11 Aligned_cols=271 Identities=9% Similarity=0.052 Sum_probs=188.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeE-EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
..+.++++.++|+++++...++.|.+|+..+.... .+..+...+.++++.+++..+++...++.|..||.. +... .+
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Ee
Confidence 46789999999998888778899999998743332 223344678999999999888877778999999987 5543 22
Q ss_pred ee--eccCeEEEEcc-CCceEEEEcCCCeEEEEEcCCCcce-eEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC
Q 011224 281 EF--HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPI-KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356 (490)
Q Consensus 281 ~~--~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~ 356 (490)
.. ....+..+.+. +...+++...++.|+.++.. +... ..+......+.++++.++++++++...++.|..|+. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 22 12345566654 34455666667888888876 3332 222334457889999999998777777889999998 4
Q ss_pred Cceee-eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE-EeeCCCCCEEEEEECCCCCEEE
Q 011224 357 DKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY-SLNGHREPVYSLAFSPTGEYLA 434 (490)
Q Consensus 357 ~~~~~-~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~spdg~~l~ 434 (490)
++... .+......+..+++.+++. +.++....+.|.+|+. +++... .+..+...+.+|+++++|++.+
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGA---------LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWF 245 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred CcEEEeeCCCCCCCcceEEECCCCC---------EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEE
Confidence 44432 1222345678899988874 4455555678999998 454433 3344456789999999999777
Q ss_pred EEeCCCcEEEEEcCCCeEEEE-Ee-cCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 435 SGSLDKSMHIWSLKEGKIVKT-YT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 435 s~s~dg~i~iw~~~~~~~~~~-~~-~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+...++.|..|+. +++.... .. ....+.+++++++|++.++.. + .|..+|.+
T Consensus 246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 7767789999998 5654322 22 234578899999998766665 5 78888754
No 195
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=1.9e-13 Score=128.40 Aligned_cols=239 Identities=9% Similarity=0.103 Sum_probs=163.4
Q ss_pred CCeEEEEEcCCCCEEEE-------EeCCCeEEEEECCCceeEEecC-----CCCCEEEEEecCC-CCEEEEEeCCCeEEE
Q 011224 202 KDVTTLDWNGEGTLLAT-------GSYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKK-GDYLLTGSCDKTAIV 268 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~s-------g~~dg~i~iw~~~~~~~~~~~~-----h~~~V~~l~~~~~-~~~l~s~s~D~~v~i 268 (490)
....+++|+++|.++++ +..++.|.+|+........+.. +...+.+++++++ ++.+++. ....|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence 34678999999998888 6778999999965443333332 5567899999999 6544444 4457888
Q ss_pred EEccCcceeEe-eeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC-
Q 011224 269 WDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD- 346 (490)
Q Consensus 269 wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d- 346 (490)
||.. ++.... ... .. ......+.+++++++|+++++...+
T Consensus 97 ~d~~-g~~~~~~~~~------------------------------~~-------~~~~~~~~~i~~d~~g~l~v~~~~~~ 138 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKD------------------------------SE-------GRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp EETT-SCEEECCSBC------------------------------TT-------SCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred EeCC-CCEEEEEecc------------------------------CC-------CccccCCcCEEECCCCCEEEEecCcc
Confidence 9877 543211 000 00 0012347789999999988777655
Q ss_pred --------------CeEEEEecCCCceeeeeccccccEEEEEEc----CCCCCCCCCCCcEEEEEEECCCcEEEEeCC-C
Q 011224 347 --------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWS----PTGSGTNNPNQQLILASASFDSTVKLWDVE-L 407 (490)
Q Consensus 347 --------------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~----p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-~ 407 (490)
+.|..|+.. ++... +..+......++|+ |++. .++++...++.|.+|++. .
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~--------~l~v~~~~~~~i~~~~~~~~ 208 (314)
T 1pjx_A 139 VAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPY--------QLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEE--------EEEEEETTTTEEEEEEEEET
T ss_pred cccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCC--------EEEEEECCCCeEEEEECCCC
Confidence 567777765 44322 22233456788898 8763 244555678899999976 4
Q ss_pred Ce-----EEEEeeCCC-CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEECCCCCEEE-EEEC
Q 011224 408 GK-----LLYSLNGHR-EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIA-ACFA 479 (490)
Q Consensus 408 ~~-----~~~~~~~h~-~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~~~g~~la-~~~~ 479 (490)
++ ....+.++. ..+..++++++|.++++...++.|.+|+..+++.+..+... ..+.+++|+|+|+.|. +...
T Consensus 209 g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 209 AKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp TEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred CccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence 54 223344443 56789999999999998888899999999877766666544 5689999999999555 4555
Q ss_pred CCcEEEEEee
Q 011224 480 NHTVCVLDFR 489 (490)
Q Consensus 480 d~~v~v~~~~ 489 (490)
++.|.+|++.
T Consensus 289 ~~~l~~~~~~ 298 (314)
T 1pjx_A 289 NNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEEECS
T ss_pred CCeEEEEeCC
Confidence 6789988763
No 196
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=2e-13 Score=129.79 Aligned_cols=291 Identities=12% Similarity=0.099 Sum_probs=191.0
Q ss_pred ECCCCCEEEEEEC-----CCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe----
Q 011224 150 WSPAGSLLASGSG-----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS---- 220 (490)
Q Consensus 150 ~sp~~~~l~sgs~-----D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~---- 220 (490)
..|+++.++.... ++.|.+.|..+++. +..+.. + ..+ . ++++|||++++.+.
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v-------------~~~I~v---G-~~P-~-va~spDG~~lyVan~~~~ 100 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-------------IGMIDG---G-FLP-N-PVVADDGSFIAHASTVFS 100 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-------------EEEEEE---C-SSC-E-EEECTTSSCEEEEEEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeE-------------EEEEEC---C-CCC-c-EEECCCCCEEEEEccccc
Confidence 4688887777765 67899999876542 112211 1 123 3 99999999888775
Q ss_pred ------CCCeEEEEECCCce-eEEecCC-------CCCEEEEEecCCCCEEEEEeC--CCeEEEEEccCcceeEeeeeec
Q 011224 221 ------YDGQARIWSTNGDL-KCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 221 ------~dg~i~iw~~~~~~-~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
.++.|.+||..... ...+.-. ...-..+.|+|+|++++++.. +++|.++|+.+++.+.++....
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC
Confidence 36789999987543 3333211 113457899999999988764 6899999999999888775422
Q ss_pred cCeEEEEccCCceEEEEcCCCeEEEEEcCC-CcceeEecCC----CCCe-eEEEEc-CCCCEEEEEeCCCeEEEEecCCC
Q 011224 285 GPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGH----QGEV-NCVKWD-PTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h----~~~v-~~v~~~-~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
. ..+.......|++.+.||.+.+.++.. ++.+.....+ ..++ ....|. ++|++++ .+.+|++.+.|+.+.
T Consensus 181 ~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 181 C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 1 122223455677777888888888876 4443221111 1222 224554 6776554 556899999998765
Q ss_pred c--eeeeec--c--------ccccEEEEEEcCCCCCCCCCCCcEEEEEEEC--------CCcEEEEeCCCCeEEEEeeCC
Q 011224 358 K--YVHDLR--E--------HSKEIYTIRWSPTGSGTNNPNQQLILASASF--------DSTVKLWDVELGKLLYSLNGH 417 (490)
Q Consensus 358 ~--~~~~~~--~--------~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~--------dg~i~iwd~~~~~~~~~~~~h 417 (490)
. .+..+. . .......++++|++. .+|++.... .+.|-+.|+.+++.+..+.-
T Consensus 258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~-------~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v- 329 (386)
T 3sjl_D 258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-------RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM- 329 (386)
T ss_dssp SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-
T ss_pred cceeecceeccccccccccccCCCcceeeECCCCC-------eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-
Confidence 4 222221 0 011122345566553 234433321 25799999999999888763
Q ss_pred CCCEEEEEECCCCC-EEEEE-eCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCC
Q 011224 418 REPVYSLAFSPTGE-YLASG-SLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 470 (490)
Q Consensus 418 ~~~v~~l~~spdg~-~l~s~-s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~ 470 (490)
...+++|+|+||++ +|+++ ..++.|.++|..++++++++...+..+.+.+++|
T Consensus 330 g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 330 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 24688999999996 66664 4589999999999999999987777777888777
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=2.4e-13 Score=128.72 Aligned_cols=253 Identities=9% Similarity=-0.023 Sum_probs=175.6
Q ss_pred CCCeEEEEECCCceeE-Eec------CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc-
Q 011224 221 YDGQARIWSTNGDLKC-TLS------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 292 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~-~~~------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~- 292 (490)
.++.|.++|....... .+. ........+.+. .+..+++...+++|.+||+.+++.+..+.. ......+.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEe
Confidence 3789999998754332 111 122345777774 344555666689999999999998887743 344556666
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCC-----CCeeEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeeeeccc
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREH 366 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~-----~~v~~v~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~ 366 (490)
.+...+++...++.|.++|..+.+....+.... .....+++ .+++++++.. .++.|.+||+.+++.+..+...
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 445555555578999999998887766554322 14556777 4555555544 4899999999999887766543
Q ss_pred cccEEEEEEcCCCCCCCCCCCcEEEEEEECC----------CcEEEEeCCCCeEEEEeeCC-CCCEEEEEECCCCCEEEE
Q 011224 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFD----------STVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLAS 435 (490)
Q Consensus 367 ~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d----------g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~s 435 (490)
.....++++|+|. +++++..+ +.|.+||..+++....+.-. ......++|+|++++|.+
T Consensus 172 -~~p~~i~~~~dG~---------l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 172 -IQPTSLVMDKYNK---------MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp -SCBCCCEECTTSE---------EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred -CCccceEEcCCCC---------EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 2345677788774 44454443 78999999999887666532 235799999999998887
Q ss_pred EeCCCcEEEEEcCCCeEEEE--Eec-CCCEEEEEECC-CCCEEEEE----ECCCcEEEEEe
Q 011224 436 GSLDKSMHIWSLKEGKIVKT--YTG-NGGIFEVCWNK-EGDKIAAC----FANHTVCVLDF 488 (490)
Q Consensus 436 ~s~dg~i~iw~~~~~~~~~~--~~~-~~~v~~~~~~~-~g~~la~~----~~d~~v~v~~~ 488 (490)
+.. .|.+||..++++... +.. ...+..++++| +|.+.++. ..+++|.+||.
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence 654 899999998876421 121 24589999999 56666776 67889999975
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=7.6e-12 Score=116.36 Aligned_cols=276 Identities=10% Similarity=0.018 Sum_probs=187.8
Q ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 141 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 141 H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
....+.++++.++|.++++...++.|.+|+.. +.. . .. .. ......+..+++.++|+++++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~---------~--~~-~~----~~~~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI---------K--EF-EV----PTPDAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------E--EE-EC----SSTTCCEEEEEECTTSCEEEEET
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce---------E--EE-EC----CCCCCcceeEEECCCCCEEEEec
Confidence 44578899999999988887788999999865 321 0 00 01 11235688999999999888877
Q ss_pred CCCeEEEEECCCceeE-EecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe-eeeeccCeEEEEccC-Cce
Q 011224 221 YDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN-NVS 297 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~-~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 297 (490)
.++.|..|+..+.... .+......+.++++.+++..+++...++.|..||.. +..... +......+..+.+.. ...
T Consensus 81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 7889999998754432 222244678999999999888887778899999987 554322 111223455666543 345
Q ss_pred EEEEcCCCeEEEEEcCCCccee-EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee-eccccccEEEEEE
Q 011224 298 FATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRW 375 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~v~~ 375 (490)
+++...++.|+.++. .+.... ....+...+.+++++++|.+.++....+.|.+|+. ++..... +......+.++++
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 556666788888887 333322 12234456889999999988887777888999998 4443322 2234456789999
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEE-EEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL-YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
+++|. +.++...++.|..|+.. ++.. ..+......+.+++++++|.++++.. . .|..++..
T Consensus 238 d~~g~---------l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 238 GKNSE---------IWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp CSTTC---------EEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred CCCCC---------EEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 98875 45555557899999984 4433 33443445688999999998777655 4 67777653
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=2e-12 Score=130.77 Aligned_cols=268 Identities=13% Similarity=0.091 Sum_probs=189.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEcc--CcceeEeeeeeccCe
Q 011224 211 GEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPT 287 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~--~~~~~~~~~~~~~~~ 287 (490)
+.+.++++...++.|.++|.... ....+. ....+..+.|+|+++++++++.|+.|.+||+. +.+.+..+..... .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEe-CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence 34567777888999999998764 444444 33456799999999999999999999999996 7777666654333 3
Q ss_pred EEEEcc-----CC-ceEEEEcCCCeEEEEEcCCCcceeEecC----------C-CCCeeEEEEcCCCCE-EEEEeCCCeE
Q 011224 288 LDVDWR-----NN-VSFATSSTDNMIYVCKIGENRPIKTFAG----------H-QGEVNCVKWDPTGSL-LASCSDDVTA 349 (490)
Q Consensus 288 ~~~~~~-----~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~----------h-~~~v~~v~~~~~~~~-l~s~~~dg~i 349 (490)
..+.+. +. ..+++...++.+.++|..+.+++..+.. | ...+..+..++++.. +++...+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 455555 33 4456667789999999988888776542 1 125778888888665 5556677999
Q ss_pred EEEecCCCceeee-eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC-----CCCCEEE
Q 011224 350 KIWNMKQDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-----HREPVYS 423 (490)
Q Consensus 350 ~iwd~~~~~~~~~-~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~ 423 (490)
.++|....+.+.. ..........+.|+|++. +++++...++.|.++|+.+++.+..+.- |.+.-..
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr--------~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~ 394 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHR--------YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN 394 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSC--------EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCC--------EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence 9999876542211 112334567788999886 4555566788999999999998776653 3221112
Q ss_pred EEECCCC-CEEEEEe-CCCcEEEEEcCC-------CeEEEEEecCC-CEEEEEECCCCCEEEEEEC-------CCcEEEE
Q 011224 424 LAFSPTG-EYLASGS-LDKSMHIWSLKE-------GKIVKTYTGNG-GIFEVCWNKEGDKIAACFA-------NHTVCVL 486 (490)
Q Consensus 424 l~~spdg-~~l~s~s-~dg~i~iw~~~~-------~~~~~~~~~~~-~v~~~~~~~~g~~la~~~~-------d~~v~v~ 486 (490)
+ ++|++ .+.+++. .++.|.+++..+ .+.++++...+ +-..+..+|++++|.+... ..+|.||
T Consensus 395 ~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~ 473 (567)
T 1qks_A 395 F-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVF 473 (567)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEE
T ss_pred e-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEE
Confidence 2 68874 5555554 468999999987 67888887643 3356778999998888663 3589999
Q ss_pred Eee
Q 011224 487 DFR 489 (490)
Q Consensus 487 ~~~ 489 (490)
|+.
T Consensus 474 d~~ 476 (567)
T 1qks_A 474 DIK 476 (567)
T ss_dssp EGG
T ss_pred ECC
Confidence 864
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.61 E-value=1.7e-13 Score=144.53 Aligned_cols=267 Identities=14% Similarity=0.097 Sum_probs=169.8
Q ss_pred CCCCEEEEEeCCCe---EEEEE--CC---CceeEEe-------cCCCCCEEEEEecCCCCEEEEEeCC-----CeEEEEE
Q 011224 211 GEGTLLATGSYDGQ---ARIWS--TN---GDLKCTL-------SKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWD 270 (490)
Q Consensus 211 ~~~~~l~sg~~dg~---i~iw~--~~---~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd 270 (490)
|+|.+++....++. -.+|. .. +.....+ .+|...+.+++|+|+|++|+.++.+ .+|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 67887776654432 45554 32 3222222 2233468899999999998876554 4699999
Q ss_pred ccCcceeEeeeeeccCeEEEEccCCceEEEEcCCC--------------eEEEEEcCCCcc--eeEecC--CCCCeeEEE
Q 011224 271 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN--------------MIYVCKIGENRP--IKTFAG--HQGEVNCVK 332 (490)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------------~i~~~~~~~~~~--~~~~~~--h~~~v~~v~ 332 (490)
+.+++..... .....+..+.|.++..++.+..+. .|++|++.++.. ...+.. +...+..+.
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~ 274 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS 274 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEE
Confidence 9999875431 111112356676555555555433 388999877652 233433 334588999
Q ss_pred EcCCCCEEEEEeCCC-----eEEEEecCCC--ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC----CCcEE
Q 011224 333 WDPTGSLLASCSDDV-----TAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF----DSTVK 401 (490)
Q Consensus 333 ~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~----dg~i~ 401 (490)
|+|||++|+..+.++ .|.+||+.++ .....+..+...+.... +|++. .|+..+. ++.|.
T Consensus 275 ~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~---------~l~~~s~~~~~~~~l~ 344 (741)
T 1yr2_A 275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGD---------QLWFVSGDGAPLKKIV 344 (741)
T ss_dssp ECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETT---------EEEEEECTTCTTCEEE
T ss_pred ECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCC---------EEEEEECCCCCCCEEE
Confidence 999999988777544 8999999776 31344444444444443 37665 3444443 45699
Q ss_pred EEeCCCC--eEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcC-CCeEEEEEec--CCCEEEEEECCCCCEEEE
Q 011224 402 LWDVELG--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK-EGKIVKTYTG--NGGIFEVCWNKEGDKIAA 476 (490)
Q Consensus 402 iwd~~~~--~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~-~~~~~~~~~~--~~~v~~~~~~~~g~~la~ 476 (490)
+||+.++ .....+..+...+..++|+ ++.++++...|+..+||.+. +|+.+..+.. .+.+..++|+|+++.|+.
T Consensus 345 ~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 345 RVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp EEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEE
T ss_pred EEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEE
Confidence 9999874 3333344455567788887 66778888999988887664 4666666553 455889999999986664
Q ss_pred EEC----CCcEEEEEee
Q 011224 477 CFA----NHTVCVLDFR 489 (490)
Q Consensus 477 ~~~----d~~v~v~~~~ 489 (490)
... .++|.+||+.
T Consensus 424 ~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 424 SFSSFTQPATVLALDPA 440 (741)
T ss_dssp EEEETTEEEEEEEEETT
T ss_pred EEcCCCCCCEEEEEECC
Confidence 432 3678888863
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.61 E-value=4.7e-12 Score=121.70 Aligned_cols=275 Identities=9% Similarity=-0.060 Sum_probs=175.7
Q ss_pred ECCCCCEEEEEEC--CC---cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe----
Q 011224 150 WSPAGSLLASGSG--DS---TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS---- 220 (490)
Q Consensus 150 ~sp~~~~l~sgs~--D~---~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~---- 220 (490)
..|++++++.... .. +|.+||..+++.. ..+.. ...+ .+++||||++++.+.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-------------~~i~~----g~~p--~i~~spDg~~lyv~n~~~~ 88 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-------------GHVNG----GFLP--NPVAAHSGSEFALASTSFS 88 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-------------EEecC----CCCC--CeEECCCCCEEEEEecccc
Confidence 4467777666543 22 7899998765421 11111 1123 889999999999886
Q ss_pred ------CCCeEEEEECCC-ceeEEecCC-------CCCEEEEEecCCCCEEEEEeC--CCeEEEEEccCcceeEe-eeee
Q 011224 221 ------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFH 283 (490)
Q Consensus 221 ------~dg~i~iw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~-~~~~ 283 (490)
.++.|.+||... .....+.-- ......+.|+|+|++|++++. +.+|.++| .+++.+.. +...
T Consensus 89 ~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~ 167 (373)
T 2mad_H 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP 167 (373)
T ss_pred ccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC
Confidence 367899999864 233322211 123458899999999998874 57899999 99988766 5432
Q ss_pred ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec-----CCCCC-eeEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 284 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-----~h~~~-v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
. .+ .+.......+++.+.|+.+.+++. .++.+.... ....+ .....+.+++..++..+..+.+.+.|+...
T Consensus 168 ~-~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 168 T-CY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred c-eE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 2 12 222233456677778899999988 665542211 11111 223456666655444457789999998654
Q ss_pred c--eeeeeccc----------cccEEEEEEcCCCCCCCCCCCcEEEEEEE---------CCCcEEEEeCCCCeEEEEeeC
Q 011224 358 K--YVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNG 416 (490)
Q Consensus 358 ~--~~~~~~~~----------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs---------~dg~i~iwd~~~~~~~~~~~~ 416 (490)
. .+..+... ......+.++|++. .++++.. ..+.|.++|..+++.+.++..
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~--------~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~ 316 (373)
T 2mad_H 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD--------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL 316 (373)
T ss_pred cceEeeeeeecCCcccccceecCceEeEEECCCCC--------EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC
Confidence 2 22222111 11123355666654 2333222 246799999999999888863
Q ss_pred CCCCEEEEEECCCCC-EEEEEe-CCCcEEEEEcCCCeEEEEE
Q 011224 417 HREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 417 h~~~v~~l~~spdg~-~l~s~s-~dg~i~iw~~~~~~~~~~~ 456 (490)
......++|+|||+ +|+++. .++.|.+||+.++++++++
T Consensus 317 -g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 317 -GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred -CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 33579999999999 777777 5899999999999998884
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.61 E-value=1.1e-12 Score=123.26 Aligned_cols=244 Identities=9% Similarity=0.083 Sum_probs=160.7
Q ss_pred cccccceeEEEECCCCCEEEE-------EECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcC
Q 011224 139 EGHTSEVCACAWSPAGSLLAS-------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 211 (490)
Q Consensus 139 ~~H~~~V~~~~~sp~~~~l~s-------gs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~ 211 (490)
...-....+++|+++|.++++ ++.++.|.+|+..++... .+.. .....+...+.++++++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~~--~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VICK--PEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEEC--CEETTEECCEEEEEECS
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEEe--cccCCCCCCCceEEEec
Confidence 344456789999999998888 677899999997655311 0000 00011234588999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCceeEEe-cC-----CCCCEEEEEecCCCCEEEEEeCC---------------CeEEEE
Q 011224 212 E-GTLLATGSYDGQARIWSTNGDLKCTL-SK-----HKGPIFSLKWNKKGDYLLTGSCD---------------KTAIVW 269 (490)
Q Consensus 212 ~-~~~l~sg~~dg~i~iw~~~~~~~~~~-~~-----h~~~V~~l~~~~~~~~l~s~s~D---------------~~v~iw 269 (490)
+ |+++++. ..+.|.+|+..+.. ..+ .. ....+.++++.++++.+++...+ +.|..|
T Consensus 81 ~~g~l~v~~-~~~~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 81 DANQLFVAD-MRLGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp SSSEEEEEE-TTTEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred CCCcEEEEE-CCCCEEEEeCCCCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 9 7655544 44578899987443 333 21 12347899999999877776654 344444
Q ss_pred EccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEc----CCCCEE-EEEe
Q 011224 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD----PTGSLL-ASCS 344 (490)
Q Consensus 270 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~----~~~~~l-~s~~ 344 (490)
|.. ++.. .+..+......++|+ |+++.+ ++..
T Consensus 159 ~~~-g~~~------------------------------------------~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~ 195 (314)
T 1pjx_A 159 TTD-GQMI------------------------------------------QVDTAFQFPNGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CTT-SCEE------------------------------------------EEEEEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred CCC-CCEE------------------------------------------EeccCCCCcceEEEecccCCCCCEEEEEEC
Confidence 432 2211 111112235678899 999654 4555
Q ss_pred CCCeEEEEecC-CCce-----eeeecccc-ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC
Q 011224 345 DDVTAKIWNMK-QDKY-----VHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417 (490)
Q Consensus 345 ~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h 417 (490)
.++.|.+|+.. .+.. ...+..+. .....++++++|. ++++...++.|.+||..+++.+..+..+
T Consensus 196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~---------l~v~~~~~~~i~~~d~~~g~~~~~~~~~ 266 (314)
T 1pjx_A 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN---------LLVANWGSSHIEVFGPDGGQPKMRIRCP 266 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC---------EEEEEETTTEEEEECTTCBSCSEEEECS
T ss_pred CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC---------EEEEEcCCCEEEEEcCCCCcEeEEEeCC
Confidence 68899999976 3432 22233332 4577889999885 5666667889999999877776667666
Q ss_pred CCCEEEEEECCCCCEE-EEEeCCCcEEEEEcCC
Q 011224 418 REPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKE 449 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l-~s~s~dg~i~iw~~~~ 449 (490)
...+.+++|+|+|++| ++...++.|..|++..
T Consensus 267 ~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 267 FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 6789999999999955 5555668899999864
No 203
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=9e-12 Score=115.81 Aligned_cols=234 Identities=8% Similarity=0.039 Sum_probs=169.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEE-ecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~-~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
..+.++++.++|+++++...++.|.+|+..+..... +..+...+.++++.+++..+++...++.|..||.. +.. ..+
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEE
Confidence 468999999999988877778999999987433221 22345678999999999888887778889999875 221 111
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 360 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 360 (490)
. +......+.++++.++|.++++...++.|.+||. +++..
T Consensus 93 ------------------------------~---------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 93 ------------------------------T---------LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp ------------------------------E---------CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ------------------------------e---------CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 0 0112335778999999998888878889999998 44433
Q ss_pred e-eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEE-eeCCCCCEEEEEECCCCCEEEEEeC
Q 011224 361 H-DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 361 ~-~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
. .+......+..+++.+++. ++++...++.|..||. +++.... +......+.+++++++|.++++...
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~---------l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 202 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNA---------LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII 202 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSC---------EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred EecCCCCCCCCceEEEcCCCC---------EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence 2 2222345678999988875 5555556789999998 6665432 3334556899999999998887777
Q ss_pred CCcEEEEEcCCCeEEEEE-e-cCCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 439 DKSMHIWSLKEGKIVKTY-T-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 439 dg~i~iw~~~~~~~~~~~-~-~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
++.|.+|+. +++..... . ....+.+++++++|++.++...++.|.+||.
T Consensus 203 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 203 GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 889999999 77654321 1 2346899999999997777767788988874
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.56 E-value=6.5e-12 Score=117.09 Aligned_cols=229 Identities=14% Similarity=0.196 Sum_probs=155.6
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 203 DVTTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 203 ~V~~~~~s~~-~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
-.-+..|+++ +.++++...++.|+.|+..+.....+ .....+.+++++++++++++ . +..|.+||+.++++.....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEe
Confidence 3457889985 55666677789999999876544333 34567899999999995544 4 5689999987765322110
Q ss_pred eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC---------CeEEEE
Q 011224 282 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------VTAKIW 352 (490)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------g~i~iw 352 (490)
. .... ....++.++++|+|+++++.... ....||
T Consensus 91 ~------------------------------~~~~-------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~ 133 (297)
T 3g4e_A 91 V------------------------------DNDK-------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALY 133 (297)
T ss_dssp C------------------------------CTTC-------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEE
T ss_pred c------------------------------CCCC-------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEE
Confidence 0 0000 12246788999999977655322 234555
Q ss_pred ecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeC--CCCeE-----EEEeeCCCCCEEEEE
Q 011224 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV--ELGKL-----LYSLNGHREPVYSLA 425 (490)
Q Consensus 353 d~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~--~~~~~-----~~~~~~h~~~v~~l~ 425 (490)
.+.....+..+.........++|+|++. .++++.+.++.|.+|++ .++.. +..+..+......++
T Consensus 134 ~~d~~g~~~~~~~~~~~pngi~~spdg~--------~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~ 205 (297)
T 3g4e_A 134 SLFPDHHVKKYFDQVDISNGLDWSLDHK--------IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMC 205 (297)
T ss_dssp EECTTSCEEEEEEEESBEEEEEECTTSC--------EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEE
T ss_pred EEECCCCEEEEeeccccccceEEcCCCC--------EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeE
Confidence 5543322222333334567899999885 34566667889999987 45543 223333445678999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEEEEC-CCCCEEEEEEC
Q 011224 426 FSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWN-KEGDKIAACFA 479 (490)
Q Consensus 426 ~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~~~~-~~g~~la~~~~ 479 (490)
++++|++.++....+.|.+|+..+|+++..+... ..+++++|. |+++.|..++.
T Consensus 206 ~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 206 IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 9999998888888889999999999998888765 569999998 89887765543
No 205
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=5.4e-11 Score=114.31 Aligned_cols=263 Identities=8% Similarity=-0.013 Sum_probs=170.9
Q ss_pred cCCCCEEEEEeC--CC---eEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEe----------CCCeEEEEEccC
Q 011224 210 NGEGTLLATGSY--DG---QARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKT 273 (490)
Q Consensus 210 s~~~~~l~sg~~--dg---~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~ 273 (490)
.|+++++++... .. .|.++|... .....+.....+ .++++|++++++.+. .+++|.+||+.+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467777766653 22 789999764 334445443444 899999999998876 367899999998
Q ss_pred cceeEeeeee-------ccCeEEEEccCC-ceE-EEEcC-CCeEEEEEcCCCcceeE-ecCCCCCeeEEEEcCCC-CEEE
Q 011224 274 EEWKQQFEFH-------SGPTLDVDWRNN-VSF-ATSST-DNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLA 341 (490)
Q Consensus 274 ~~~~~~~~~~-------~~~~~~~~~~~~-~~~-~~~~~-d~~i~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~ 341 (490)
.+.+..+... ......+.+.++ ..+ ++... ++.|.++| .+.+.+.. +... .|+.+.|++ +.++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEE
Confidence 8877666432 112234455433 333 34333 57899999 88877766 4321 134555665 4567
Q ss_pred EEeCCCeEEEEecCCCceeeeec-----cccccE-EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEE
Q 011224 342 SCSDDVTAKIWNMKQDKYVHDLR-----EHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYS 413 (490)
Q Consensus 342 s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~i-~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~ 413 (490)
+.+.||.+.++|. +++.+.... ....++ ....+.+++. . ++++ +..+.+.+.|+.... .+..
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~-~~~~-~~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-------R-IVWP-VYSGKILQADISAAGATNKAP 251 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCC-------E-EEEE-cCCceEEEEeccCCcceEeee
Confidence 7788999999999 776653221 111111 1223344432 1 2333 367889999986542 2222
Q ss_pred eeC----------CCCCEEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCC-
Q 011224 414 LNG----------HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD- 472 (490)
Q Consensus 414 ~~~----------h~~~v~~l~~spdg~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~- 472 (490)
+.- .......++++|+++.|..+.. .+.|.++|+.+++++.++...+...+++|+|||+
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~ 331 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP 331 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCe
Confidence 211 0122445889999987776543 3579999999999999998777789999999999
Q ss_pred EEEEEE-CCCcEEEEEee
Q 011224 473 KIAACF-ANHTVCVLDFR 489 (490)
Q Consensus 473 ~la~~~-~d~~v~v~~~~ 489 (490)
+++++. .++.|.|||++
T Consensus 332 ~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 332 DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEEEcCCCCeEEEEECC
Confidence 677766 58999999975
No 206
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=1.2e-12 Score=138.22 Aligned_cols=239 Identities=13% Similarity=0.074 Sum_probs=157.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-----CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCe-----------
Q 011224 202 KDVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT----------- 265 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~d-----g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~----------- 265 (490)
..+..++|||||++|+.++.+ ..|++||+.+........+...+..++|+|+ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 357889999999999887654 4699999876544332222222357899999 99888877654
Q ss_pred ---EEEEEccCccee--Eeeeeec--cCeEEEEccCCc-eEEEEcC-----CCeEEEEEcCCC--cceeEecCCCCCeeE
Q 011224 266 ---AIVWDVKTEEWK--QQFEFHS--GPTLDVDWRNNV-SFATSST-----DNMIYVCKIGEN--RPIKTFAGHQGEVNC 330 (490)
Q Consensus 266 ---v~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~~-~~~~~~~-----d~~i~~~~~~~~--~~~~~~~~h~~~v~~ 330 (490)
|++|++.++... ..+.... ..+..+.|.++. .++..+. ...|++|++..+ .+...+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 889998776532 2222222 135667776554 3443332 348999998765 314455555555544
Q ss_pred EEEcCCCCEEEEEeCC----CeEEEEecCCC--ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEe
Q 011224 331 VKWDPTGSLLASCSDD----VTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 404 (490)
Q Consensus 331 v~~~~~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd 404 (490)
.. +|+|+.|+..+.+ +.|.+||+.++ .....+..+...+..+.|. .+ .++++...|+..+||.
T Consensus 322 ~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~---------~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 322 FV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN---------RLFASYIHDAKSQVLA 390 (741)
T ss_dssp EE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT---------EEEEEEEETTEEEEEE
T ss_pred EE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC---------EEEEEEEECCEEEEEE
Confidence 43 4899988877764 45999998874 2333333344456667775 22 3788888899888775
Q ss_pred CC-CCeEEEEeeC-CCCCEEEEEECCCCCEEE-EEe---CCCcEEEEEcCCCeE
Q 011224 405 VE-LGKLLYSLNG-HREPVYSLAFSPTGEYLA-SGS---LDKSMHIWSLKEGKI 452 (490)
Q Consensus 405 ~~-~~~~~~~~~~-h~~~v~~l~~spdg~~l~-s~s---~dg~i~iw~~~~~~~ 452 (490)
+. .+..+..+.. +...|..++++|+++.|+ +.+ ..++|++||+.+++.
T Consensus 391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 54 4566666654 356789999999987665 222 347899999988763
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.53 E-value=1.2e-11 Score=120.59 Aligned_cols=234 Identities=11% Similarity=0.051 Sum_probs=160.1
Q ss_pred CCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc-eEEEEcCCC--eEEEEEcCCCccee
Q 011224 243 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN--MIYVCKIGENRPIK 319 (490)
Q Consensus 243 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~--~i~~~~~~~~~~~~ 319 (490)
.....|+|+++++.+++...++.|++||+.++...........+. +.+.... .++.+..++ .|++++........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 357899999999877787778999999998877655443322222 4554332 344444433 78888877655433
Q ss_pred Ee----cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee----eccccccE-E-EEEEcCCCCCCCCCCCcE
Q 011224 320 TF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD----LREHSKEI-Y-TIRWSPTGSGTNNPNQQL 389 (490)
Q Consensus 320 ~~----~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~i-~-~v~~~p~g~~~~~~~~~~ 389 (490)
.+ ......+.+++++|++..|+.+..++.|..||..++..... ........ . .++|+|++. .
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g--------~ 280 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS--------N 280 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT--------E
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC--------E
Confidence 33 22446678999999544455577788999999887653221 11121222 2 889998532 2
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeeCCC---------------CCEEEEEECCCCCEEEEEe-CCCcEEEEEcCCCeEE
Q 011224 390 ILASASFDSTVKLWDVELGKLLYSLNGHR---------------EPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGKIV 453 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~~~~~~~~~~~h~---------------~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~~~~~ 453 (490)
++++-..++.|+.|+.... +..+.++. .....|+|+|+|.++++-+ .++.|+.|++.+|.+.
T Consensus 281 lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 5666677889999997643 22333321 3478999999999888888 8999999998888754
Q ss_pred EEEec---------------CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 454 KTYTG---------------NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 454 ~~~~~---------------~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
..... -.....++++|+|+++++-..++.|+.+.+
T Consensus 359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 33221 124789999999999999999999998875
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=9.2e-12 Score=120.46 Aligned_cols=277 Identities=10% Similarity=0.063 Sum_probs=180.5
Q ss_pred CCCCEEEEEEC-C----CcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe------
Q 011224 152 PAGSLLASGSG-D----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS------ 220 (490)
Q Consensus 152 p~~~~l~sgs~-D----~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~------ 220 (490)
|++++++.... + +.|.+.|..+.+.. ..+.. + ..+ .++++|||++++.+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-------------~~I~v---G-~~P--gia~SpDgk~lyVan~~~~~~ 142 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-------------GMTDG---G-FLP--HPVAAEDGSFFAQASTVFERI 142 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-------------EEEEE---C-SSC--EEEECTTSSCEEEEEEEEEET
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-------------EEEEC---C-CCC--ceEECCCCCEEEEEecccccc
Confidence 45665555443 2 68999998775421 11111 1 234 799999999888876
Q ss_pred ----CCCeEEEEECCCc-eeEEecCC-------CCCEEEEEecCCCCEEEEEeC--CCeEEEEEccCcceeEeeeeeccC
Q 011224 221 ----YDGQARIWSTNGD-LKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP 286 (490)
Q Consensus 221 ----~dg~i~iw~~~~~-~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~ 286 (490)
.++.|.++|.... ....+.-- ......+.|+|+|++++++.. +++|.+.|+.+++.+..+.....
T Consensus 143 ~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~- 221 (426)
T 3c75_H 143 ARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC- 221 (426)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-
T ss_pred ccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-
Confidence 3678999998653 33333211 123357899999999998874 57899999999998877664221
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeE----ecCCCCC-eeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee-
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT----FAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV- 360 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~----~~~h~~~-v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~- 360 (490)
..+.......|++.+.|+.+.+.+...++.... +.....+ ...+.+.+++..++..+..+.+.+.|+......
T Consensus 222 -~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 222 -YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp -EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred -eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE
Confidence 122222345666777788877777754444321 1111122 124578899888777788899999998654321
Q ss_pred -eeecc----------ccccEEEEEEcCCCCCCCCCCCcEEEEEEE--------CCCcEEEEeCCCCeEEEEeeCCCCCE
Q 011224 361 -HDLRE----------HSKEIYTIRWSPTGSGTNNPNQQLILASAS--------FDSTVKLWDVELGKLLYSLNGHREPV 421 (490)
Q Consensus 361 -~~~~~----------~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs--------~dg~i~iwd~~~~~~~~~~~~h~~~v 421 (490)
..+.. .......++++|++. .+|++... ..+.|.++|..+.+.+.++..- ...
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~-------rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P 372 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSD-------RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEI 372 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGT-------EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEE
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCC-------EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCc
Confidence 11110 011112256777764 22333221 1357999999999999888632 247
Q ss_pred EEEEECCCCC-EEEEEe-CCCcEEEEEcCCCeEEEEEe
Q 011224 422 YSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 422 ~~l~~spdg~-~l~s~s-~dg~i~iw~~~~~~~~~~~~ 457 (490)
..|+|+|||+ +|+++. .++.|.++|+.++++++++.
T Consensus 373 ~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 373 DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 8899999998 888887 58999999999999999873
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=2.1e-11 Score=118.89 Aligned_cols=233 Identities=11% Similarity=0.054 Sum_probs=160.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCC--eEEEEEccCcceeEe
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ 279 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~ 279 (490)
.....++|+++++++++...++.|++|+..+.....+........ ++|+++++.|+++..++ .|.+|+...+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 457899999999988888888999999998655544433233334 99999999999888766 788998876544333
Q ss_pred ee---e-eccCeEEEEccC-CceEEEEcCCCeEEEEEcCCCcceeE----ecCCCCCe--eEEEEcCC-CCEEEEEeCCC
Q 011224 280 FE---F-HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKT----FAGHQGEV--NCVKWDPT-GSLLASCSDDV 347 (490)
Q Consensus 280 ~~---~-~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~----~~~h~~~v--~~v~~~~~-~~~l~s~~~dg 347 (490)
+. . ....+..+.+.+ +..+..+..++.|+.|+......... ..++.+.- ..++|+|+ +.++++-...+
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 31 1 222334455544 44444466678899999876543222 22332222 39999995 66777777889
Q ss_pred eEEEEecCCCceeeeeccc---------------cccEEEEEEcCCCCCCCCCCCcEEEEEEE-CCCcEEEEeCCCCeEE
Q 011224 348 TAKIWNMKQDKYVHDLREH---------------SKEIYTIRWSPTGSGTNNPNQQLILASAS-FDSTVKLWDVELGKLL 411 (490)
Q Consensus 348 ~i~iwd~~~~~~~~~~~~~---------------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs-~dg~i~iwd~~~~~~~ 411 (490)
.|+.|+.... +..+.++ -.....++++|+|. ++++-+ .++.|+.|++.++...
T Consensus 290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~---------lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN---------FYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC---------EEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC---------EEEEeCCCCCEEEEEECCCCEEE
Confidence 9999987643 2222222 13467899999885 566666 7899999998777643
Q ss_pred EEeeCC---------------CCCEEEEEECCCCCEEEEEeCCCcEEEEEc
Q 011224 412 YSLNGH---------------REPVYSLAFSPTGEYLASGSLDKSMHIWSL 447 (490)
Q Consensus 412 ~~~~~h---------------~~~v~~l~~spdg~~l~s~s~dg~i~iw~~ 447 (490)
.+.++ -.....|+++|+|.++++-..++.|+.+.+
T Consensus 359 -~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 -TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 34333 235789999999988888888889988765
No 210
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.49 E-value=6.8e-11 Score=111.70 Aligned_cols=225 Identities=11% Similarity=0.036 Sum_probs=150.0
Q ss_pred eEEEEEcCCC-CEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee
Q 011224 204 VTTLDWNGEG-TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 204 V~~~~~s~~~-~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
....+|++++ .++++...++.|..|+..+.....+. +...+.++.|+|+++++++. . ..|.+||+.+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~- 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE- 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC-
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee-
Confidence 4567899974 56666667899999998766544433 35679999999998876654 3 448889987765321100
Q ss_pred eccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC------CCeEEEEecCC
Q 011224 283 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD------DVTAKIWNMKQ 356 (490)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------dg~i~iwd~~~ 356 (490)
.... .....++.++++|+|+++++... .+.|..++ +
T Consensus 127 -----------------------------~~~~-------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~ 168 (326)
T 2ghs_A 127 -----------------------------LESD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K 168 (326)
T ss_dssp -----------------------------SSTT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T
T ss_pred -----------------------------CCCC-------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C
Confidence 0000 01234778999999997766542 24455555 4
Q ss_pred CceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC--CC-e-----EEEEeeCCCCCEEEEEECC
Q 011224 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE--LG-K-----LLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 357 ~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~--~~-~-----~~~~~~~h~~~v~~l~~sp 428 (490)
++. ..+.........++|+|++. .++++.+.++.|.+|++. ++ . .+..+......+..+++++
T Consensus 169 g~~-~~~~~~~~~~~~i~~s~dg~--------~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~ 239 (326)
T 2ghs_A 169 GKV-TKLFADISIPNSICFSPDGT--------TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA 239 (326)
T ss_dssp TEE-EEEEEEESSEEEEEECTTSC--------EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred CcE-EEeeCCCcccCCeEEcCCCC--------EEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence 433 22322334567899999985 244555667899999985 55 2 2333433445678899999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCeEEEEEecCC-CEEEEEEC-CCCCEEEEEECC
Q 011224 429 TGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN-KEGDKIAACFAN 480 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~-~v~~~~~~-~~g~~la~~~~d 480 (490)
+|.+.++...++.|.+|+. +++.+..+.... .+.+++|+ |+++.|..+...
T Consensus 240 ~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 240 EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998887777789999998 677777776543 59999998 898877655443
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=2.3e-12 Score=122.95 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=133.9
Q ss_pred CEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC
Q 011224 244 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 323 (490)
Q Consensus 244 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~ 323 (490)
++..|++++....+++|+.++ +++|++....-. +. ..+ +. ..+.... .
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~--~~--~~~------------------~~--------~~~~~~~-~ 86 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDH--IT--SDS------------------TP--------LTFKWEK-E 86 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHH--HH--SSS------------------CC--------CCCSEEE-E
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhh--hc--ccc------------------cc--------ccceEEe-e
Confidence 678899999999999999884 556987543200 00 000 00 0111111 2
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEE
Q 011224 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403 (490)
Q Consensus 324 h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iw 403 (490)
+.. |..++| ++++|+++ .++.|++||+.+.........+...+.++.+.+. -+++++.||.|.+|
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p-----------~~av~~~dG~L~v~ 151 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN-----------TLVILNSVNDLSAL 151 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS-----------EEEEEETTSEEEEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC-----------CEEEEECCCCEEEE
Confidence 445 899999 89999998 8899999999877655556666777888776543 17788999999999
Q ss_pred eCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE--EEEE------e----cCCCEEEEEECCCC
Q 011224 404 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTY------T----GNGGIFEVCWNKEG 471 (490)
Q Consensus 404 d~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~--~~~~------~----~~~~v~~~~~~~~g 471 (490)
|+..+.... +...|++++|||+| ++.|..||+|++|+...+.+ .+++ . +...|.+++|.+++
T Consensus 152 dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 152 DLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp ETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred EccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 999877643 44579999999999 78899999999999988776 5566 2 23459999999999
Q ss_pred CEEEEEE
Q 011224 472 DKIAACF 478 (490)
Q Consensus 472 ~~la~~~ 478 (490)
.++++-.
T Consensus 226 ~flv~y~ 232 (388)
T 1xip_A 226 DFLAVFG 232 (388)
T ss_dssp EEEEEEE
T ss_pred eEEEEEc
Confidence 9888643
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=6.7e-12 Score=119.61 Aligned_cols=257 Identities=9% Similarity=0.045 Sum_probs=167.6
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCeEEEEECCCceeEEe-------cCCCCCEEEEEecCCCCEEEEEeC-----CCeEE
Q 011224 202 KDVTTLDWNGEGTLLATGSY--DGQARIWSTNGDLKCTL-------SKHKGPIFSLKWNKKGDYLLTGSC-----DKTAI 267 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~--dg~i~iw~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~l~s~s~-----D~~v~ 267 (490)
..+..++++++|+++++... ++.++||.+.......+ ..|...+.++++.++++.+++-.. +..|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 35889999999999988642 34355555432222222 235568999999999876555443 57899
Q ss_pred EEEccCcceeEeeeeec------cCeEEEEcc--CCceEEEEc---CCCeEEEEEcCCCcceeEecCCCCCee-EEEEcC
Q 011224 268 VWDVKTEEWKQQFEFHS------GPTLDVDWR--NNVSFATSS---TDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDP 335 (490)
Q Consensus 268 iwd~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~---~d~~i~~~~~~~~~~~~~~~~h~~~v~-~v~~~~ 335 (490)
+||+.+++.+..+.... .....+.+. ....+++.. .++.|++|+..+++..+.+.+|..... ...+.+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 99999988777665432 123444454 344556655 678999999987777666665532211 144555
Q ss_pred CCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC-cEEEEeCC---CCe--
Q 011224 336 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDVE---LGK-- 409 (490)
Q Consensus 336 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg-~i~iwd~~---~~~-- 409 (490)
+|..+.+.+.++.++.|.. .+..++|+|++. .|+.+...+ .|..++.. .+.
T Consensus 177 ~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~---------~ly~~~~~~~~l~~~~~~~~~~~~~~ 233 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENE---------WLYLSPMHSTSMYRIKSADLSNLQLT 233 (343)
T ss_dssp TTEECBEECTTSCEECCCC--------------CEEEEEECTTSC---------EEEEEESSCSEEEEEEHHHHTCTTCC
T ss_pred CCEEEEeccCCCceeceec--------------ccceeEeccCCC---------EEEEEeCCCCeEEEEEHHHhcCCCCC
Confidence 7777777888888776631 356799999885 455665555 44444321 110
Q ss_pred ---EE--EEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec--CCCEEEEEECCCCCEEEEEECCC
Q 011224 410 ---LL--YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNKEGDKIAACFANH 481 (490)
Q Consensus 410 ---~~--~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~--~~~v~~~~~~~~g~~la~~~~d~ 481 (490)
.. ....++......++++++|.++++...++.|.+|+..+|++...... ...+.+++|.++|+++++....+
T Consensus 234 ~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 234 DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 00 01112333456799999999999999999999999866775433332 23589999999999888776443
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=6.2e-11 Score=110.89 Aligned_cols=230 Identities=9% Similarity=0.034 Sum_probs=153.3
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee
Q 011224 203 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 203 ~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~ 281 (490)
......|+++|+ +++++..++.|..|+..+. ...+..+...+.+++++++|+.+++...++.|.+|+.. +.......
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 356788999998 6677778899999998654 34455566778999999999866666666889999875 43211100
Q ss_pred eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC-CCCCeeEEEEcCCCCEEEE----EeC-----------
Q 011224 282 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLAS----CSD----------- 345 (490)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s----~~~----------- 345 (490)
. ..+ ....++.++++|+|++++| |..
T Consensus 124 ~--------------------------------------~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 124 R--------------------------------------YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp E--------------------------------------ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCS
T ss_pred c--------------------------------------cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccc
Confidence 0 000 0124567888999988876 332
Q ss_pred --CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC------CcEEEEeCCCCeEE--EEe-
Q 011224 346 --DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD------STVKLWDVELGKLL--YSL- 414 (490)
Q Consensus 346 --dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d------g~i~iwd~~~~~~~--~~~- 414 (490)
.+.|..||..+++..... .......++|+|++. .|+.+... +.|.+|++..+... ..+
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~---------~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~ 234 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQ---------TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA 234 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSS---------EEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred cCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCC---------EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence 245777776666543322 334567899999986 34444443 78999998755411 111
Q ss_pred eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 415 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 415 ~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.........++++++|++.++. .+ .|.+|+. +|+.+..+.....+..++|+|+++.|..++.++ +..++
T Consensus 235 ~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 235 SVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred ECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 1122345678999999965554 44 4999998 577777776655788999999999888887754 44443
No 214
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=3.7e-11 Score=114.15 Aligned_cols=267 Identities=9% Similarity=0.026 Sum_probs=174.2
Q ss_pred EEcCCCCEEEEEeC-----CCeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEe----------CCCeEEEEEc
Q 011224 208 DWNGEGTLLATGSY-----DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDV 271 (490)
Q Consensus 208 ~~s~~~~~l~sg~~-----dg~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~ 271 (490)
...|+++.++.... ++.|.+.|.... ....+..-..+ . ++++|+|+++++++ .+++|.+||+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34688888888765 679999998654 44455544455 4 99999999988776 3678999999
Q ss_pred cCcceeEeeeeec-------cCeEEEEccC--CceEEEEc-CCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE
Q 011224 272 KTEEWKQQFEFHS-------GPTLDVDWRN--NVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 341 (490)
Q Consensus 272 ~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~-~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~ 341 (490)
.+.+.+..+.... .....+.+.. ...+++.. .++.|.++|+.+.+.+..+.-.. . ...+....+.++
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~ 193 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFF 193 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeE
Confidence 9999888775432 1222344433 33344443 37899999999998887764211 1 122322345677
Q ss_pred EEeCCCeEEEEecCC-Cceeeeeccc----cccEE-EEEEc-CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEE
Q 011224 342 SCSDDVTAKIWNMKQ-DKYVHDLREH----SKEIY-TIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLY 412 (490)
Q Consensus 342 s~~~dg~i~iwd~~~-~~~~~~~~~~----~~~i~-~v~~~-p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~ 412 (490)
+.+.||++.+.++.+ ++........ ..++. ...|. ++| ..++ .+.+|.|.+.|+.... .+.
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG--------~~~~--vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAG--------RLVW--PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTT--------EEEE--EBTTSEEEEEECTTSSCEECC
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCC--------cEEE--EeCCCEEEEEECCCCcceeec
Confidence 888899998888876 4442211100 01111 12332 333 2223 5568999999997653 222
Q ss_pred Eee---------C-CCCCEEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCC
Q 011224 413 SLN---------G-HREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD 472 (490)
Q Consensus 413 ~~~---------~-h~~~v~~l~~spdg~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~ 472 (490)
.+. + ....+..++++|+++.|..... .+.|.+.|+.++++++.+.....+++++++|||+
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~ 343 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK 343 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence 221 0 0122345788999988776542 2579999999999999987766789999999997
Q ss_pred -EEEEE-ECCCcEEEEEee
Q 011224 473 -KIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 473 -~la~~-~~d~~v~v~~~~ 489 (490)
+|.++ ..++.|.|+|..
T Consensus 344 ~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 344 PLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp CEEEEEETTTTEEEEEETT
T ss_pred eEEEEEcCCCCeEEEEECC
Confidence 66554 558999999974
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.42 E-value=5.6e-12 Score=120.28 Aligned_cols=166 Identities=10% Similarity=0.059 Sum_probs=128.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCce-----------eEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEc
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 271 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~-----------~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~ 271 (490)
++..+++++...++++|+.++ +.+|++..-. ......+.+ |+.|+| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 588999999999999999985 5559743111 112234666 999999 88999998 8899999999
Q ss_pred cCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Q 011224 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351 (490)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~i 351 (490)
.+.........+..++.++.+.... ++++..||.+++|++....... +...|+|++|||+| ++.|..||++++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 8776555566666677777765543 8888999999999998776543 34579999999999 678999999999
Q ss_pred EecCCCce--eeee------c---cccccEEEEEEcCCCC
Q 011224 352 WNMKQDKY--VHDL------R---EHSKEIYTIRWSPTGS 380 (490)
Q Consensus 352 wd~~~~~~--~~~~------~---~~~~~i~~v~~~p~g~ 380 (490)
|+...+.. ..++ . .|...|.+|.|.+++.
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 98877664 4444 2 3677899999998763
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=3.8e-10 Score=105.02 Aligned_cols=226 Identities=12% Similarity=0.110 Sum_probs=147.1
Q ss_pred cccceeEEEECCC-CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEE
Q 011224 141 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219 (490)
Q Consensus 141 H~~~V~~~~~sp~-~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg 219 (490)
+..--.+..|+|+ +.++++...++.|..|+..++.. .. . .....+.+++++++|+++++
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~---~-----~~~~~~~~i~~~~dG~l~v~- 70 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QR---V-----TMDAPVSSVALRQSGGYVAT- 70 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EE---E-----ECSSCEEEEEEBTTSSEEEE-
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EE---E-----eCCCceEEEEECCCCCEEEE-
Confidence 3444568899996 55677777889999999875431 00 1 01346899999999996554
Q ss_pred eCCCeEEEEECCCceeEEecCC-----CCCEEEEEecCCCCEEEEEeCCC---------eEEEEEccCcceeEeeeeecc
Q 011224 220 SYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCDK---------TAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 220 ~~dg~i~iw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~ 285 (490)
. ++.|.+|+........+... ...+..++++|+|+.+++..... .-.+|.+...
T Consensus 71 ~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----------- 138 (297)
T 3g4e_A 71 I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD----------- 138 (297)
T ss_dssp E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----------
T ss_pred E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-----------
Confidence 3 57899999875443333221 23478899999998666443221 1222222110
Q ss_pred CeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEE-EEEeCCCeEEEEec--CCCce---
Q 011224 286 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNM--KQDKY--- 359 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~dg~i~iwd~--~~~~~--- 359 (490)
..+..+..+....+.++|+|+++.+ ++.+.++.|.+|++ .++..
T Consensus 139 ------------------------------g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~ 188 (297)
T 3g4e_A 139 ------------------------------HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR 188 (297)
T ss_dssp ------------------------------SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred ------------------------------CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc
Confidence 0011111112345789999999865 56666889999987 34432
Q ss_pred --eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEEC-CCCCEEEEE
Q 011224 360 --VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASG 436 (490)
Q Consensus 360 --~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~s~ 436 (490)
+..+.........+++.++|. +.++....+.|..||..+++.+..+..+...+++++|+ |+++.|..+
T Consensus 189 ~~~~~~~~~~~~p~g~~~d~~G~---------lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 189 RSVYKLEKEEQIPDGMCIDAEGK---------LWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp EEEEECCGGGCEEEEEEEBTTSC---------EEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred EEEEECCCCCCCCCeeEECCCCC---------EEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 222223335667888988885 56666677889999999999998888777789999998 888766544
Q ss_pred e
Q 011224 437 S 437 (490)
Q Consensus 437 s 437 (490)
+
T Consensus 260 ~ 260 (297)
T 3g4e_A 260 C 260 (297)
T ss_dssp E
T ss_pred c
Confidence 4
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.40 E-value=6.9e-11 Score=114.32 Aligned_cols=264 Identities=8% Similarity=0.003 Sum_probs=169.0
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCCc-eeEEecCCCCCEEEEEecCCCCEEEEEe----------CCCeEEEEEccCc
Q 011224 211 GEGTLLATGSYD-----GQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTE 274 (490)
Q Consensus 211 ~~~~~l~sg~~d-----g~i~iw~~~~~-~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~ 274 (490)
+++..++..... +.|.+.|.... ....+..-..+ .+.++|++++|+++. .++.|.++|+.+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 456655555442 69999998754 44455444455 899999999988876 3678999999999
Q ss_pred ceeEeeeee-------ccCeEEEEccC--CceEEEEcC-CCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEE
Q 011224 275 EWKQQFEFH-------SGPTLDVDWRN--NVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASC 343 (490)
Q Consensus 275 ~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~-d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~ 343 (490)
+.+..+... ......+.+.. ...+++... ++.|.+.|..+.+.+..+.--. +....|++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEE
Confidence 988777542 11122334433 333444433 6889999999988777665311 12334443 556667
Q ss_pred eCCCeEEEEecCCCceeee----eccccccE-EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEE--Eee-
Q 011224 344 SDDVTAKIWNMKQDKYVHD----LREHSKEI-YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--SLN- 415 (490)
Q Consensus 344 ~~dg~i~iwd~~~~~~~~~----~~~~~~~i-~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~- 415 (490)
+.||++.+.++.+++.... +.....++ ..+.|.+++. .+++ .+..+.|.+.|........ .+.
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~--------~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG--------RLVW-PTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC--------EEEE-EBTTSEEEEEEECSSCEEECCCEES
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC--------EEEE-EeCCCcEEEEeccCCceEEeeeeee
Confidence 7788877777755544321 11111111 1234555553 2333 3567899999986544321 111
Q ss_pred -C-C-------CCCEEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCC-EEE
Q 011224 416 -G-H-------REPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIA 475 (490)
Q Consensus 416 -~-h-------~~~v~~l~~spdg~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~-~la 475 (490)
. . ......++|+|+++.|..+.. .+.|.++|+.+++.+.++.......+++|+|||+ +++
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~ly 386 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLY 386 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEE
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEE
Confidence 0 0 011223789999887666532 3579999999999999987666689999999999 888
Q ss_pred EEE-CCCcEEEEEee
Q 011224 476 ACF-ANHTVCVLDFR 489 (490)
Q Consensus 476 ~~~-~d~~v~v~~~~ 489 (490)
++. .++.|.|+|+.
T Consensus 387 v~n~~s~~VsVID~~ 401 (426)
T 3c75_H 387 ALSAGTQTLHIYDAA 401 (426)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EEcCCCCeEEEEECC
Confidence 776 58999999974
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.39 E-value=2.1e-11 Score=127.40 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=152.7
Q ss_pred CCCCCEEEEEecCCCCEEEE-----EeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCC----------
Q 011224 240 KHKGPIFSLKWNKKGDYLLT-----GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD---------- 304 (490)
Q Consensus 240 ~h~~~V~~l~~~~~~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---------- 304 (490)
+|...+.+++|+|+|++|+- |+...+|++||+.+++..... ........+.|.++..|+.+..+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCccccccccc
Confidence 35567888999999998873 333367999999999865431 11111234456644455555444
Q ss_pred ---CeEEEEEcCCCcc--eeEec--C-CCCCeeEEEEcCCCCEEEEEeC----CCeEEEEecCCCc-eeeeeccccccEE
Q 011224 305 ---NMIYVCKIGENRP--IKTFA--G-HQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDK-YVHDLREHSKEIY 371 (490)
Q Consensus 305 ---~~i~~~~~~~~~~--~~~~~--~-h~~~v~~v~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~~~~~~~i~ 371 (490)
..|++|++.+... ...+. . |...+..+.|+|||++|+.... ...|.+||+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 3489999887643 33333 2 4445788999999998754432 3589999987663 3344444444444
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECC---CcEEEEeCCCCeE--EEEeeCCCCCEEEEEECCCCCEEEEEeCC-C--cEE
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFD---STVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLD-K--SMH 443 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg~~l~s~s~d-g--~i~ 443 (490)
.. |++++. .+++....+ +.|..+++.++.. ...+..|...+. .|++++++|+....+ + .|+
T Consensus 285 ~~-~~~~g~--------~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 285 SL-VDNKGS--------TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp EE-EEEETT--------EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred EE-EeccCC--------EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 44 555553 244444443 6799999987653 245556666555 899999988776554 3 689
Q ss_pred EEEcCCCeEEEEEe--cCCCEEEEEECCCCCEEEEEECC----CcEEEEEe
Q 011224 444 IWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIAACFAN----HTVCVLDF 488 (490)
Q Consensus 444 iw~~~~~~~~~~~~--~~~~v~~~~~~~~g~~la~~~~d----~~v~v~~~ 488 (490)
+|++..+. ...+. ..+.+..++++|+++.|+....+ ++|..||+
T Consensus 354 ~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 354 QFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 99987544 44443 33457788899999877766555 77888875
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.38 E-value=5.4e-11 Score=124.34 Aligned_cols=242 Identities=12% Similarity=0.133 Sum_probs=151.5
Q ss_pred cccccceeEEEECCCCCEEEE-----EECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCC
Q 011224 139 EGHTSEVCACAWSPAGSLLAS-----GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213 (490)
Q Consensus 139 ~~H~~~V~~~~~sp~~~~l~s-----gs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~ 213 (490)
.+|...+.+++|||||++||- |+.+..|++||+.++.... ..+... ....++|+ ||
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------~~~~~~---------k~~~~~Ws-Dg 185 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------TPLKDV---------KFSGISWL-GN 185 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------EEEEEE---------ESCCCEEE-TT
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------cccCCc---------eeccEEEe-CC
Confidence 357778999999999998873 3334689999998875210 011000 02456899 99
Q ss_pred CEEEEEeCCC-------------eEEEEECCCce---eEEe--cC-CCCCEEEEEecCCCCEEEEEeC----CCeEEEEE
Q 011224 214 TLLATGSYDG-------------QARIWSTNGDL---KCTL--SK-HKGPIFSLKWNKKGDYLLTGSC----DKTAIVWD 270 (490)
Q Consensus 214 ~~l~sg~~dg-------------~i~iw~~~~~~---~~~~--~~-h~~~V~~l~~~~~~~~l~s~s~----D~~v~iwd 270 (490)
+.|+.++.+. .|++|++.... ...+ .. |...+.++.|+|+|++|+..+. ...|++||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999988874 38999876432 2222 23 4455788999999998754332 35899999
Q ss_pred ccCcc-eeEeeeeeccCeEE-EEccCCceEEEEcC---CCeEEEEEcCCCcc--eeEecCCCCCeeEEEEcCCCCEEEEE
Q 011224 271 VKTEE-WKQQFEFHSGPTLD-VDWRNNVSFATSST---DNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASC 343 (490)
Q Consensus 271 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---d~~i~~~~~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~ 343 (490)
+.++. ....+..+...... +....+..++.+.. .+.|+.+++..... ...+..|...+. .|+++++.|+..
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 87763 22333333333322 33334444445443 36789999877654 345666766665 889999887766
Q ss_pred eC-CC--eEEEEecCCCceeeeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEEC---CCcEEEEeCCCCeE
Q 011224 344 SD-DV--TAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASF---DSTVKLWDVELGKL 410 (490)
Q Consensus 344 ~~-dg--~i~iwd~~~~~~~~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~---dg~i~iwd~~~~~~ 410 (490)
.. ++ .|++|++..+. ...+.. ....+..+.++|++. .++++.+. -++|..||+.+++.
T Consensus 344 ~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~--------~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 344 YMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP--------ALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS--------CEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC--------EEEEEecCCCCCCEEEEEECCCCeE
Confidence 55 44 68889987543 333332 234455666666554 23333332 27899999987754
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.38 E-value=1.4e-10 Score=108.52 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=147.0
Q ss_pred CCceeeccccccceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 132 NSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 132 ~~~~~~l~~H~~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
...+..+..+.....+.+|+|+|+ +++++..++.|..|+.. +. . ..+. .....+..++++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~---------~--~~~~-------~~~~~~~gl~~d 94 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT---------V--DVLL-------DATAFTNGNAVD 94 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC---------E--EEEE-------ESCSCEEEEEEC
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC---------E--EEEe-------CCCCccceeeEC
Confidence 344455555666778999999998 67777788999999863 31 0 0111 123458899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCceeEEecCC----CCCEEEEEecCCCCEEEE----EeCC-------------CeEEEE
Q 011224 211 GEGTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKWNKKGDYLLT----GSCD-------------KTAIVW 269 (490)
Q Consensus 211 ~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h----~~~V~~l~~~~~~~~l~s----~s~D-------------~~v~iw 269 (490)
++|+++++...++.|.+|+.++......... ...+..+++.|+|+.+++ |..+ +.|..|
T Consensus 95 ~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 95 AQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 9999777666678899999875433221111 123567888888887776 3221 233333
Q ss_pred EccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCC---
Q 011224 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD--- 346 (490)
Q Consensus 270 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--- 346 (490)
|..+++. ... . .....+.++|+|+++.|+.+...
T Consensus 175 d~~~g~~-----------------------------------------~~~-~-~~~~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 175 PPDGSPL-----------------------------------------QRM-A-DLDHPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CSSSCCC-----------------------------------------EEE-E-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred cCCCCcE-----------------------------------------EEE-e-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence 3332221 111 1 12345789999999977766654
Q ss_pred ---CeEEEEecCCCceeee---e-ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCC
Q 011224 347 ---VTAKIWNMKQDKYVHD---L-REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 419 (490)
Q Consensus 347 ---g~i~iwd~~~~~~~~~---~-~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~ 419 (490)
+.|.+|++..+. +.. + .........+++.++|. +. .+..+ .|.+|+. .++.+..+....
T Consensus 212 ~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~---------lw-v~~~~-gv~~~~~-~g~~~~~~~~~~- 277 (305)
T 3dr2_A 212 HGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW---------LW-SSSGT-GVCVFDS-DGQLLGHIPTPG- 277 (305)
T ss_dssp -CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC---------EE-ECCSS-EEEEECT-TSCEEEEEECSS-
T ss_pred CCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC---------EE-EecCC-cEEEECC-CCCEEEEEECCC-
Confidence 789999987543 211 1 01122234566677664 33 33344 4999998 477777776554
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEE
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
.+.+++|+|+++.|..++.++..+
T Consensus 278 ~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 278 TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CCCEEEECTTSCEEEEEETTEEEE
T ss_pred ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 588999999998888877765333
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=9.7e-10 Score=103.74 Aligned_cols=221 Identities=10% Similarity=-0.003 Sum_probs=140.5
Q ss_pred ceeEEEECCCC-CEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 144 EVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 144 ~V~~~~~sp~~-~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
-..+.+|+|++ .++++...++.|.+|+..++.. ..+. ....+.+++|+++|+++++. .
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~~-----~~~~v~~i~~~~dg~l~v~~-~- 108 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--------------TVHA-----LPFMGSALAKISDSKQLIAS-D- 108 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEEE-----CSSCEEEEEEEETTEEEEEE-T-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEEE-----CCCcceEEEEeCCCeEEEEE-C-
Confidence 34678999974 5667777788999999865421 1111 12468999999999887764 3
Q ss_pred CeEEEEECCCceeEEecCC-----CCCEEEEEecCCCCEEEEEeCC----CeEEEEEccCcceeEeeeeeccCeEEEEcc
Q 011224 223 GQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (490)
..|.+|+..+.....+... ...+..++++|+|+.+++...+ +...||.+.+++..
T Consensus 109 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~---------------- 172 (326)
T 2ghs_A 109 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT---------------- 172 (326)
T ss_dssp TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE----------------
T ss_pred CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE----------------
Confidence 4589999765443333221 2357889999999866654322 12222222122110
Q ss_pred CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEEecC--CC-ce-----eeeec
Q 011224 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMK--QD-KY-----VHDLR 364 (490)
Q Consensus 294 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~~--~~-~~-----~~~~~ 364 (490)
.+..+....+.++|+|+++.++ +.+.++.|.+|++. ++ .. +..+.
T Consensus 173 --------------------------~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~ 226 (326)
T 2ghs_A 173 --------------------------KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST 226 (326)
T ss_dssp --------------------------EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT
T ss_pred --------------------------EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC
Confidence 0101112356899999998664 44567899999986 54 32 22222
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEEC-CCCCEEEEEe
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS-PTGEYLASGS 437 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pdg~~l~s~s 437 (490)
........+++.++|. +.++...++.|..||. +++.+..+..+...+++++|+ |++..|+.++
T Consensus 227 ~~~~~p~gi~~d~~G~---------lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 227 GIKGGMDGSVCDAEGH---------IWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TSSSEEEEEEECTTSC---------EEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCCCCeeEECCCCC---------EEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 2334567788888875 4555556788999998 577777777666679999998 8887665444
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.36 E-value=2.4e-09 Score=103.19 Aligned_cols=304 Identities=9% Similarity=0.037 Sum_probs=184.2
Q ss_pred CCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 011224 153 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN- 231 (490)
Q Consensus 153 ~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~- 231 (490)
.+..|+.++.++.|..+|..+++......... ...........+.+. ...++..++.++.++.|..+|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~t 122 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAE--------KDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSD 122 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTT
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCcc--------ccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCC
Confidence 36677888888999999988775321110000 000000001122211 11235677888899999999976
Q ss_pred CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe-----EEEEccCCceEEEEcCCCe
Q 011224 232 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDWRNNVSFATSSTDNM 306 (490)
Q Consensus 232 ~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~ 306 (490)
+.................. .+..++.++.++.|..+|..+++....+....... ...... +..++.+..++.
T Consensus 123 G~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~ 199 (376)
T 3q7m_A 123 GTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGR 199 (376)
T ss_dssp CCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTE
T ss_pred CCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCE
Confidence 5555444332211111111 24578888999999999999998766554322110 011111 345666777889
Q ss_pred EEEEEcCCCcceeEecCCCC--C--------e-eEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEE
Q 011224 307 IYVCKIGENRPIKTFAGHQG--E--------V-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375 (490)
Q Consensus 307 i~~~~~~~~~~~~~~~~h~~--~--------v-~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~ 375 (490)
++.++..+++.+..+..... . + ..... .+..++.++.++.+..+|..+++.+..... .....+..
T Consensus 200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~ 275 (376)
T 3q7m_A 200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV 275 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE
T ss_pred EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE
Confidence 99999888777655442210 0 1 11111 245677788899999999999887755432 22333333
Q ss_pred cCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC-CCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 376 SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 376 ~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
. .+ .+..++.++.|..+|..+++.++..... ...+..... .+..|+.++.+|.|.++|..+|+++.
T Consensus 276 ~-~~----------~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 276 D-GN----------RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp E-TT----------EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred E-CC----------EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 2 22 4666788999999999999998887622 222222333 24678888999999999999999987
Q ss_pred EEec-CCCEEE-EEECCCCCEEEEEECCCcEEEEE
Q 011224 455 TYTG-NGGIFE-VCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 455 ~~~~-~~~v~~-~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.+.. ...+.. +.. .+..|..++.+|.|..|+
T Consensus 343 ~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 343 QQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 7765 222221 111 256788889999999886
No 223
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.35 E-value=5.6e-11 Score=112.26 Aligned_cols=298 Identities=14% Similarity=0.072 Sum_probs=185.5
Q ss_pred EEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 011224 147 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 226 (490)
Q Consensus 147 ~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~ 226 (490)
+..+..++. |+.|+.++.|..|| .++...... . .....+.++...++|.++ .++.+ +.
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~-------------~----~~~~~~~~~~~~~~g~l~-v~t~~--l~ 81 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFF-------------K----SGEIIECRPSIGKDGTIY-FGSDK--VY 81 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESS-------------C----GGGEEEECCEETTTTEEC-CSSCE--EE
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEE-------------e----cCCCcccceEEecCCcEE-EecCc--EE
Confidence 344444554 55666788888898 665421110 0 011234566666666544 44444 88
Q ss_pred EEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCe
Q 011224 227 IWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNM 306 (490)
Q Consensus 227 iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 306 (490)
.++..+.....+...........+. +..++.++.++.+..+|.. +.....+......+..+....+..+..++.++.
T Consensus 82 ~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~ 158 (330)
T 3hxj_A 82 AINPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNY 158 (330)
T ss_dssp EECCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSE
T ss_pred EECCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCE
Confidence 8886554433332222222222233 5678888889999999988 665544443333333333343455666777889
Q ss_pred EEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCC
Q 011224 307 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPN 386 (490)
Q Consensus 307 i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~ 386 (490)
++.++.. +..+..+......+.++...+++.+++.+ +.|..|| .+++.+..+......+.++...+++.
T Consensus 159 l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~------ 227 (330)
T 3hxj_A 159 LYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT------ 227 (330)
T ss_dssp EEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC------
T ss_pred EEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe------
Confidence 9999987 66665565555567778887888766544 7899999 66666655554445566666666653
Q ss_pred CcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC-CCEEEE
Q 011224 387 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEV 465 (490)
Q Consensus 387 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~-~~v~~~ 465 (490)
|..++.++.|..+|. +++.+..+......+.++.+.+++. |..++.+|.|..++. +++.+..+... ..+.++
T Consensus 228 ----l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~ 300 (330)
T 3hxj_A 228 ----IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATP 300 (330)
T ss_dssp ----EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCC
T ss_pred ----EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccce
Confidence 555777888988874 5677776665444455566666664 566778888999996 77777666543 335677
Q ss_pred EECCCCCEEEEEECCCcEEEEEe
Q 011224 466 CWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 466 ~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
...++|+ |..++.+|.+++...
T Consensus 301 ~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 301 VIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp EECTTCC-EEEECTTSCEEEEEC
T ss_pred EEcCCCE-EEEEcCCCeEEEEec
Confidence 7778876 455788888887754
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.33 E-value=2.5e-14 Score=137.69 Aligned_cols=257 Identities=15% Similarity=0.106 Sum_probs=139.0
Q ss_pred CCCEEEEEeCCCeEEEEECC-CceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE--
Q 011224 212 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL-- 288 (490)
Q Consensus 212 ~~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~-- 288 (490)
++..+++++.||.|+.||.. ++....+.. +++.+..+..++..+++++.|+.|+.||..+++.+..+..+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 56789999999999999964 566666654 4555555566777888889999999999988876655543321100
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccc
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 368 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 368 (490)
......+..+++++.++.++.|+..+++.+..+..+. ...++|++..+++++.|+.|+.||..+++.+..+....
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 0001123345566778899999999888776665543 23456788899999999999999999988765543211
Q ss_pred cEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEE-EEEECCCCCEE----EEEeCCCcEE
Q 011224 369 EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY-SLAFSPTGEYL----ASGSLDKSMH 443 (490)
Q Consensus 369 ~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~spdg~~l----~s~s~dg~i~ 443 (490)
.....+.++. .... .+++++.||.|+.||..+|+.+++... ..++. ...++++|... +.+ ++.++
T Consensus 161 -~~~~~~~~~~----~~~~--~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 161 -YAASLPEDDV----DYKM--SHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp -ECCBCCCCCT----TCCC--CEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred -ccCccccCCc----cccc--eEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccceeec--cccee
Confidence 1111111111 0001 356688999999999999999998874 34444 45666777532 222 44566
Q ss_pred EEEcCCCe----EEEEEecCCCEEEEEECC--CCCEEEEEECCCcEEEEEee
Q 011224 444 IWSLKEGK----IVKTYTGNGGIFEVCWNK--EGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 444 iw~~~~~~----~~~~~~~~~~v~~~~~~~--~g~~la~~~~d~~v~v~~~~ 489 (490)
.++..+|+ ++..+...+.+. +| .+..|..++.+|.|..++.+
T Consensus 231 ~ld~~tG~~~~~~~W~~~~~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 231 YLTFMSGEVGRITKWKYPFPKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHHHHHHTSCCCCCCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred eeehhcCCcccceeeeeccCcccc----ccccccceEEEecccCCEEecCcc
Confidence 67766665 433332222110 22 23456666667777666543
No 225
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=1.4e-10 Score=110.30 Aligned_cols=269 Identities=12% Similarity=0.059 Sum_probs=160.0
Q ss_pred cceeEEEECCCCCEEEEEE--CCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 143 SEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs--~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
..+..++++|+|+++++.. .++.++||.+.++... ...........+...+..++++++|+++++-.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----------~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----------PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----------ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----------cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 5789999999999998864 2344777776532110 00000011123456799999999998766654
Q ss_pred C-----CCeEEEEECCC-ceeEEecC------CCCCEEEEEecCCCCEE-EEEe---CCCeEEEEEccCcceeEeeeeec
Q 011224 221 Y-----DGQARIWSTNG-DLKCTLSK------HKGPIFSLKWNKKGDYL-LTGS---CDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 221 ~-----dg~i~iw~~~~-~~~~~~~~------h~~~V~~l~~~~~~~~l-~s~s---~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
. ++.|.+||... .....+.. +...+..+++++++..+ ++.+ .++.|.+||+.+++....+..|.
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 3 57899999864 43444332 22346789999865454 5555 67899999998887655443221
Q ss_pred cCeE-EEEc-cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC-----
Q 011224 285 GPTL-DVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD----- 357 (490)
Q Consensus 285 ~~~~-~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~----- 357 (490)
.... ...+ .+...|.....++.+..|. ..++.++|+|+|+.|+.+..++. ++|.+...
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL 230 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred cccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence 1100 0001 0111222233333332221 23678999999998888877663 44443211
Q ss_pred c-----eeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC-CCCCEEEEEECCC
Q 011224 358 K-----YVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG-HREPVYSLAFSPT 429 (490)
Q Consensus 358 ~-----~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd 429 (490)
. .... ..++......++++++|. ++++...++.|.+||..+++....... +....++++|.++
T Consensus 231 ~~~~~~~~~~~~~~g~~g~pdgia~d~~G~---------l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~ 301 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPICDGISIDKDHN---------IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSD 301 (343)
T ss_dssp TCCHHHHHTTCEEEEECCSCSCEEECTTCC---------EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTT
T ss_pred CCChhhhhcceEecccCCCCceEEECCCCC---------EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCC
Confidence 0 0000 111222344577777774 667777889999999856664333322 2456899999999
Q ss_pred CCEEEEEeCCCcEEEEE
Q 011224 430 GEYLASGSLDKSMHIWS 446 (490)
Q Consensus 430 g~~l~s~s~dg~i~iw~ 446 (490)
|.++++.+..+.+.+|.
T Consensus 302 g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 302 GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp SCEEEEECCGGGSGGGB
T ss_pred CcEEEEeCccccccccc
Confidence 99888887666555444
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=4.4e-10 Score=116.83 Aligned_cols=305 Identities=10% Similarity=0.107 Sum_probs=178.3
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccc-cC-CCCe-EEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011224 154 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN-EK-SKDV-TTLDWNGEGTLLATGSYDGQARIWST 230 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~V-~~~~~s~~~~~l~sg~~dg~i~iw~~ 230 (490)
+..|+.++.++.|.-+|..+|+........ ...... .. ...+ ..++. .+..++.++.|+.|..+|.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~---------~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa 138 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQ---------SDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDA 138 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCC---------CCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCC---------CCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEEC
Confidence 567777888899999999887643211100 000000 00 0000 01111 3567888999999999997
Q ss_pred C-CceeEEecC--CCCCEEEEEecC--CCCEEEEEe------CCCeEEEEEccCcceeEeeeeec-cC------------
Q 011224 231 N-GDLKCTLSK--HKGPIFSLKWNK--KGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFHS-GP------------ 286 (490)
Q Consensus 231 ~-~~~~~~~~~--h~~~V~~l~~~~--~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~~-~~------------ 286 (490)
. ++.+..+.. +......+..+| .+..++.++ .++.|..||+.+++.+-.+.... .+
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 139 KTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp TTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred CCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence 5 555544432 111111111122 123445443 37899999999999776554210 00
Q ss_pred -----------------e-EEEEcc-CCceEEEEcCCC-------------------eEEEEEcCCCcceeEecC--CC-
Q 011224 287 -----------------T-LDVDWR-NNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--HQ- 325 (490)
Q Consensus 287 -----------------~-~~~~~~-~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h~- 325 (490)
+ ..+.+. ....+..+..++ .|+.+|..+++.+-.+.. |.
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA 298 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence 0 012222 123344444443 489999999888776653 21
Q ss_pred ------CCeeEEEEcCCCC---EEEEEeCCCeEEEEecCCCceeeeecccc-ccEE------------------------
Q 011224 326 ------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS-KEIY------------------------ 371 (490)
Q Consensus 326 ------~~v~~v~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~------------------------ 371 (490)
..+.......+|+ .++.++.+|.+.++|..+++.+....... ....
T Consensus 299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 1222223334665 78899999999999999998874322111 0000
Q ss_pred --------------EEEEcCCCCCCCCCCCcEEEEEEE------------------------------------------
Q 011224 372 --------------TIRWSPTGSGTNNPNQQLILASAS------------------------------------------ 395 (490)
Q Consensus 372 --------------~v~~~p~g~~~~~~~~~~~l~sgs------------------------------------------ 395 (490)
.++|+|.. .++++...
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~--------~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDT--------GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTT--------TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred eEeCCCcccccCCCcceECCCC--------CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 12333332 22222111
Q ss_pred --CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCE--EEEEECCCC
Q 011224 396 --FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--FEVCWNKEG 471 (490)
Q Consensus 396 --~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v--~~~~~~~~g 471 (490)
.+|.|+.||+.+++.++++..+. ++..-.++..+.+++.|+.||.|+.||.++|+++..+....++ .-+.|..+|
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G 529 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG 529 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence 14789999999999999987543 3344456667889999999999999999999999888654332 347778899
Q ss_pred C-EEEEEE
Q 011224 472 D-KIAACF 478 (490)
Q Consensus 472 ~-~la~~~ 478 (490)
+ ++++.+
T Consensus 530 ~qyv~~~~ 537 (689)
T 1yiq_A 530 EQYVTFMA 537 (689)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 7 444443
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=1.3e-10 Score=110.56 Aligned_cols=246 Identities=7% Similarity=-0.060 Sum_probs=157.5
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEECCC-ceeEEecCC-------CCCEEEEEecCCCCEEEEEeC--CCe
Q 011224 206 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKT 265 (490)
Q Consensus 206 ~~~~s~~~~~l~sg~----------~dg~i~iw~~~~-~~~~~~~~h-------~~~V~~l~~~~~~~~l~s~s~--D~~ 265 (490)
.+.++||+++++++. .++.|.+||+.. ....++... ......+.++|+|++++++.. ...
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999998886 368999999865 344444322 122467899999999998864 467
Q ss_pred EEE--EEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC-----Cccee----EecCCCCCeeEEEEc
Q 011224 266 AIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-----NRPIK----TFAGHQGEVNCVKWD 334 (490)
Q Consensus 266 v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-----~~~~~----~~~~h~~~v~~v~~~ 334 (490)
+.+ +|+.+ +..+... +. ..+.......+++.+.|+.+.+.++.. ++.+. .+.-...+. . +
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred EEEEEEchhh---ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 888 99877 3333221 11 112223344566666778777777765 22211 011112233 3 5
Q ss_pred CCCCEEEEEeCCCeEEEEecCCCc--eeeeeccc----------cccEEEEEEcCCCCCCCCCCCcEEEEEEE---C---
Q 011224 335 PTGSLLASCSDDVTAKIWNMKQDK--YVHDLREH----------SKEIYTIRWSPTGSGTNNPNQQLILASAS---F--- 396 (490)
Q Consensus 335 ~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~----------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs---~--- 396 (490)
+++..++..+. +.+.+.|..+.. .+..+... ......++++|++. .++++.. .
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~--------~lyV~~~~~~~~~~ 290 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD--------GIMILTVEHSRSCL 290 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT--------EEEEEEEECSSCTT
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC--------EEEEEeccccCccc
Confidence 66666666666 899999986532 22222110 01111257888875 2333322 2
Q ss_pred --CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCC-EEEEEe-CCCcEEEEEcCCCeEEEEEecCCCEEEEEECCC
Q 011224 397 --DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE-YLASGS-LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKE 470 (490)
Q Consensus 397 --dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~ 470 (490)
++.+.++|+.+.+.+..+.... ....|+|+|||+ .+++.. .++.|.++|+.++++++++........+++++.
T Consensus 291 ~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~~ 367 (368)
T 1mda_H 291 AAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQNE 367 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCCC
T ss_pred ccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeecC
Confidence 2356699999999988776433 578999999997 556666 599999999999999999887666677777653
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.31 E-value=6.3e-10 Score=115.45 Aligned_cols=302 Identities=11% Similarity=0.092 Sum_probs=179.9
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccc--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011224 154 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN--EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN 231 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~ 231 (490)
+..|+.++.++.|.-+|..+|+......... ...... ........+++ .+..++.++.|+.+..+|..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~--------~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~ 146 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQI--------DRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAA 146 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCC--------CGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCC--------CccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECC
Confidence 5566777778889889988775322111000 000000 00000011122 35678888999999999974
Q ss_pred -CceeEEecCC-C----CCEEEEEecCCCCEEEEEeC------CCeEEEEEccCcceeEeeeeeccC-------------
Q 011224 232 -GDLKCTLSKH-K----GPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHSGP------------- 286 (490)
Q Consensus 232 -~~~~~~~~~h-~----~~V~~l~~~~~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~------------- 286 (490)
++.+..+..+ . ..+.+--.- .+..++.++. ++.|+.||..+++.+-.+......
T Consensus 147 tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g 225 (677)
T 1kb0_A 147 TGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA 225 (677)
T ss_dssp TCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred CCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccc
Confidence 5665555443 1 111110001 2345665554 799999999999877665432211
Q ss_pred ---------------------eEEEEccCCceEEEEcCC-------------------CeEEEEEcCCCcceeEecC--C
Q 011224 287 ---------------------TLDVDWRNNVSFATSSTD-------------------NMIYVCKIGENRPIKTFAG--H 324 (490)
Q Consensus 287 ---------------------~~~~~~~~~~~~~~~~~d-------------------~~i~~~~~~~~~~~~~~~~--h 324 (490)
...++...+..+ .+..+ +.|+.+|..+++.+-.+.. |
T Consensus 226 ~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 226 ARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp HTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred cccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence 112222233333 33332 2588888888887766543 2
Q ss_pred C-------CCeeEEEEcCCC---CEEEEEeCCCeEEEEecCCCceeeeeccccc-----------cEE------------
Q 011224 325 Q-------GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDKYVHDLREHSK-----------EIY------------ 371 (490)
Q Consensus 325 ~-------~~v~~v~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~i~------------ 371 (490)
. .....+....+| ..++.++.+|.+.++|..+++.+..+..... ++.
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 1 122233444477 6889999999999999999998765542210 010
Q ss_pred ------------EEEEcCCCCCCCCCCCcEEEEEEE------------------------------------------CC
Q 011224 372 ------------TIRWSPTGSGTNNPNQQLILASAS------------------------------------------FD 397 (490)
Q Consensus 372 ------------~v~~~p~g~~~~~~~~~~~l~sgs------------------------------------------~d 397 (490)
.++++|++ .++++... ..
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~--------~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 456 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQT--------GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPF 456 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTT--------TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCE
T ss_pred ECcCcccccCCCCceEcCCC--------CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCc
Confidence 22334432 22222211 12
Q ss_pred CcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCE--EEEEECCCCCEEE
Q 011224 398 STVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--FEVCWNKEGDKIA 475 (490)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v--~~~~~~~~g~~la 475 (490)
|.|..||+.+++.++++. +..++....++..+.+++.++.||.+++||+.+|+++..+....++ .-+.|.++|+.++
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 789999999999999886 3344555667778888999999999999999999999988654332 3466778997444
Q ss_pred E
Q 011224 476 A 476 (490)
Q Consensus 476 ~ 476 (490)
+
T Consensus 536 ~ 536 (677)
T 1kb0_A 536 S 536 (677)
T ss_dssp E
T ss_pred E
Confidence 3
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.29 E-value=3.9e-10 Score=117.03 Aligned_cols=269 Identities=10% Similarity=0.033 Sum_probs=176.2
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEEecCCCC-----------CEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 213 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKG-----------PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~-----------~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
+..++.++.++.|..+|.. ++.+..+..... ...++.+ .+..++.++.|+.|..+|..+++.+-.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 4456666777888888864 444444432211 0012222 3568889999999999999999887666
Q ss_pred eee-c----cCeE-EEEccCCceEEEEc-----CCCeEEEEEcCCCcceeEecCCCC-----------------------
Q 011224 281 EFH-S----GPTL-DVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQG----------------------- 326 (490)
Q Consensus 281 ~~~-~----~~~~-~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~----------------------- 326 (490)
... . ..+. ......+..++.++ .++.|+.+|..+++.+-.+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 543 1 0110 00112333444333 268999999988887765543211
Q ss_pred ---------CeeEEEEcCCCCEEEEEeCCC-------------------eEEEEecCCCceeeeeccccc---------c
Q 011224 327 ---------EVNCVKWDPTGSLLASCSDDV-------------------TAKIWNMKQDKYVHDLREHSK---------E 369 (490)
Q Consensus 327 ---------~v~~v~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~---------~ 369 (490)
....++++|++.+|+.++.++ .|..+|..+++.+-.++.... .
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 113578899999988887764 589999999988766543111 1
Q ss_pred EEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-----------CCE-----------------
Q 011224 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----------EPV----------------- 421 (490)
Q Consensus 370 i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----------~~v----------------- 421 (490)
..-+....+|. ...+++.++.+|.|+++|..+|+.+..+.-.. .++
T Consensus 315 p~l~~~~~dG~------~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 315 MILADIKIAGK------PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CEEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cEEEecccCCc------EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 11112112331 01367889999999999999999988765221 111
Q ss_pred -------EEEEECCCCCEEEEEeC-------------------------------------------CCcEEEEEcCCCe
Q 011224 422 -------YSLAFSPTGEYLASGSL-------------------------------------------DKSMHIWSLKEGK 451 (490)
Q Consensus 422 -------~~l~~spdg~~l~s~s~-------------------------------------------dg~i~iw~~~~~~ 451 (490)
..++|+|++.++++... .|.|..||+.+|+
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 15688999888776542 2789999999999
Q ss_pred EEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 452 IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 452 ~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
++..+.....+++..+.++|.+++.++.++.+.+||++
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 99888765555566677888899999999999999975
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.29 E-value=7.3e-10 Score=115.18 Aligned_cols=269 Identities=11% Similarity=0.051 Sum_probs=174.8
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEEecCCCC----------CE-EEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 213 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
+..++.++.++.|..+|.. ++.+..+..+.. .+ .++.. .+..++.++.|+.|..+|..+++.+-.+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4567777778889888864 555555433211 00 11122 3567889999999999999999877665
Q ss_pred eee-c-cCeEEE----EccCCceEEEEc-----CCCeEEEEEcCCCcceeEecCC-------------------------
Q 011224 281 EFH-S-GPTLDV----DWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGH------------------------- 324 (490)
Q Consensus 281 ~~~-~-~~~~~~----~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h------------------------- 324 (490)
... . .....+ ...++..++.++ .++.|+.+|..+++.+-.+...
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 542 1 000000 112333344332 3689999999988876555310
Q ss_pred ------CCCeeEEEEcCCCCEEEEEeCCCe-------------------EEEEecCCCceeeeecc--cc-------ccE
Q 011224 325 ------QGEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEI 370 (490)
Q Consensus 325 ------~~~v~~v~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i 370 (490)
......++++|+..+|+.++.++. |..||..+++.+-.++. |. .+.
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 011135788999999999988864 99999999988766543 21 111
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-CC-----------------------------
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-EP----------------------------- 420 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-~~----------------------------- 420 (490)
.......+|. ...+++.++.+|.++++|..+|+.+....-.. ..
T Consensus 308 ~l~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~ 381 (689)
T 1yiq_A 308 ILAELPIDGK------PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLV 381 (689)
T ss_dssp EEEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEE
T ss_pred EEEeeccCCc------EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEe
Confidence 1111111221 01257889999999999999999985432111 00
Q ss_pred ---------EEEEEECCCCCEEEEEeC---------------------------------------------CCcEEEEE
Q 011224 421 ---------VYSLAFSPTGEYLASGSL---------------------------------------------DKSMHIWS 446 (490)
Q Consensus 421 ---------v~~l~~spdg~~l~s~s~---------------------------------------------dg~i~iw~ 446 (490)
...++|+|+..+|++.+. +|.|..||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 112788998887776522 47899999
Q ss_pred cCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 447 LKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 447 ~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.+|+++..+.....+....+...|.+++.|+.|+.|++||.+
T Consensus 462 ~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 462 PVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp TTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 9999999888665544545677788899999999999999975
No 231
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.23 E-value=8.2e-12 Score=120.08 Aligned_cols=203 Identities=13% Similarity=0.102 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc-cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCC-ee-
Q 011224 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VN- 329 (490)
Q Consensus 253 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~-v~- 329 (490)
++..+++++.|+.|..||..+++....+.. +++.+... .++..+++++.|+.++.|+..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 467899999999999999999998776665 33332222 23446777789999999999877765555433211 11
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe
Q 011224 330 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409 (490)
Q Consensus 330 ~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~ 409 (490)
+..+. .+..|++|+.|+.|..||..+++.+..+..+. ...++|.+. .+++++.|+.|+.||.++|+
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~---------~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTS---------LLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCC---------EEEEEecCCEEEEEECCCCC
Confidence 11111 34567788889999999999998876665433 123345332 57778889999999999998
Q ss_pred EEEEeeCCCCCEEEEEECCCC---CEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEE-EEEECCCCCE
Q 011224 410 LLYSLNGHREPVYSLAFSPTG---EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF-EVCWNKEGDK 473 (490)
Q Consensus 410 ~~~~~~~h~~~v~~l~~spdg---~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~-~~~~~~~g~~ 473 (490)
.++.+..+. ....+++++. ..+++++.||.|..||..+|+++..+.....+. ..+++++|..
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 877665221 2233444432 567778999999999999999988876555543 4556677753
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.15 E-value=2.9e-08 Score=95.57 Aligned_cols=260 Identities=8% Similarity=0.024 Sum_probs=162.4
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEEecCC---------CCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee
Q 011224 213 GTLLATGSYDGQARIWSTN-GDLKCTLSKH---------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h---------~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
+..++.++.++.|..+|.. ++........ ...+.+. ....+..++.++.++.|..+|..+++..-.+..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5677788888999999975 5554444321 1223221 122456788899999999999999987655544
Q ss_pred eccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCe-----eEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 283 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-----NCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
........... +..++.++.++.++.++..+++.+..+....... ...... +..++.++.++.+..+|..++
T Consensus 132 ~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence 32211111112 3456667788899999998887766554322111 122222 456777888999999999998
Q ss_pred ceeeeecccccc----EEE---EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCC
Q 011224 358 KYVHDLREHSKE----IYT---IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 430 (490)
Q Consensus 358 ~~~~~~~~~~~~----i~~---v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg 430 (490)
+.+......... +.. +.-.|.- .. -.+..++.++.|..+|..+++.++.... .....+.. ++
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~------~~-~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~ 277 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPVV------VN-GVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DG 277 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCEE------ET-TEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ET
T ss_pred cEEEEEecccCCCCcccccccccCCCcEE------EC-CEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--EC
Confidence 876554322110 000 0000100 00 1456677899999999999999887653 23444444 35
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEEec-CC-CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 431 EYLASGSLDKSMHIWSLKEGKIVKTYTG-NG-GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 431 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~~-~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
..|..++.++.|..+|..+|+.+..... .. .+..+.. .+..|..+..+|.|.++|.+
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECC
Confidence 6788888899999999999998877652 11 1222222 35678888888999988853
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.15 E-value=1.6e-07 Score=85.69 Aligned_cols=246 Identities=11% Similarity=0.004 Sum_probs=149.7
Q ss_pred EEEEEeCCCeEEEEECCCcee------EEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeeeeccCe
Q 011224 215 LLATGSYDGQARIWSTNGDLK------CTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPT 287 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~------~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 287 (490)
+|+.+.. +.|+.++.++... ..+......+.+++|++++..|+ +-...+.|..+++.+......+.......
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4444443 4677777765432 11221223467899999766555 55567899999987665433222111234
Q ss_pred EEEEc--cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC---CCeEEEEecCCCceeee
Q 011224 288 LDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHD 362 (490)
Q Consensus 288 ~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~ 362 (490)
..+.+ .....+++....+.|.+++...................++++|++..|..+.. .+.|..+++..... ..
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~ 160 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RI 160 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EE
Confidence 44444 34566677777888998887654332222222245789999997555544443 46888888764322 22
Q ss_pred ec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCc
Q 011224 363 LR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 441 (490)
Q Consensus 363 ~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~ 441 (490)
+. ........++++|++. .+.++-...+.|..+|.........+.+. .....|+.. .+.++++....+.
T Consensus 161 ~~~~~~~~P~gia~d~~~~--------~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSS--------QLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp EECTTCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTE
T ss_pred EEECCCCCCcEEEEcCCCC--------EEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEe-CCEEEEEECCCCe
Confidence 21 2234567889988754 24555666789999999754433333332 234567664 3444445445689
Q ss_pred EEEEEcCCCeEEEEEecCC--CEEEEEECCCCC
Q 011224 442 MHIWSLKEGKIVKTYTGNG--GIFEVCWNKEGD 472 (490)
Q Consensus 442 i~iw~~~~~~~~~~~~~~~--~v~~~~~~~~g~ 472 (490)
|.+++..+++.+.++.... ..+.+++.|++.
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999999988885432 467888888875
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.10 E-value=1.2e-08 Score=96.15 Aligned_cols=218 Identities=14% Similarity=0.069 Sum_probs=142.8
Q ss_pred CCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEc
Q 011224 213 GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (490)
+..+..++.++.+..++..+........+...+.++...+++. ++.++.++.|..+|.. +.....+......+..+..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 4567778889999999987655555554555556666666665 6667788999999998 7665555544333444444
Q ss_pred cCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEE
Q 011224 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 293 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
..+..+..++ +.++.++ ..+..+..+......+.++...++|.+. .++.++.|..++. ++..+..+......+.+
T Consensus 185 d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~ 259 (330)
T 3hxj_A 185 GKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP-DGTEKWRFKTGKRIESS 259 (330)
T ss_dssp CTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT-TSCEEEEEECSSCCCSC
T ss_pred cCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC-CCCEeEEeeCCCCcccc
Confidence 3333344444 7788888 5555555555555668888888887654 5667788888874 45444444333222233
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~ 449 (490)
+...+++ .|..++.+|.|..+|. +++.+..+......+.++...++|.+ ..|+.+|.+++.....
T Consensus 260 ~~~~~~g----------~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 260 PVIGNTD----------TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYALFNLE 324 (330)
T ss_dssp CEECTTS----------CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEEEC--
T ss_pred ceEcCCC----------eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEEeccc
Confidence 3344444 2566788889999996 67777777655566778888888875 5578899999887653
No 235
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.10 E-value=5e-09 Score=99.66 Aligned_cols=243 Identities=8% Similarity=-0.064 Sum_probs=147.5
Q ss_pred eEEEEECCC-ceeEEecCCCCCEEEEEecCCCCEEEEEe----------CCCeEEEEEccCcceeEeeeeec-------c
Q 011224 224 QARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQFEFHS-------G 285 (490)
Q Consensus 224 ~i~iw~~~~-~~~~~~~~h~~~V~~l~~~~~~~~l~s~s----------~D~~v~iwd~~~~~~~~~~~~~~-------~ 285 (490)
.|.+.|... +.+.++..-..+ .+.++|++++++++. .+++|.+||+.+++.+..+.... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 788999765 444455444456 799999999988886 37899999999999988876541 1
Q ss_pred CeEEEEcc--CCceEEEEcC-CCeEEE--EEcCCCcceeEecCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEEecCC---
Q 011224 286 PTLDVDWR--NNVSFATSST-DNMIYV--CKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQ--- 356 (490)
Q Consensus 286 ~~~~~~~~--~~~~~~~~~~-d~~i~~--~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~dg~i~iwd~~~--- 356 (490)
....+.+. ....+++... ...+.+ +|..+ +..+.-- + |+.+.|++ ..+++.+.||.+.+.++.+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 12233333 2333444333 456666 66544 2332210 0 11223444 3455667788888888876
Q ss_pred --Cceeee----eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEEeeC-------CC---
Q 011224 357 --DKYVHD----LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNG-------HR--- 418 (490)
Q Consensus 357 --~~~~~~----~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~-------h~--- 418 (490)
++.+.. +.....+. . .+++. .++ ..+. +.|.+.|..... .+..+.- +.
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~--------~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p 263 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPG--------MLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTT--------EEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCC--------EEE-EEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence 333211 11111222 2 33332 123 3334 889999986532 2222210 00
Q ss_pred CCEEEEEECCCCCEEEEEeC---------CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCC-EEEEEE-CCCcEEEEE
Q 011224 419 EPVYSLAFSPTGEYLASGSL---------DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGD-KIAACF-ANHTVCVLD 487 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s~---------dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~-~la~~~-~d~~v~v~~ 487 (490)
.....++|+|+++.|..+.. ++.+.++|+.+++.+..+........++|+|||+ .++++. .+++|.|+|
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 11122689999987775432 2356699999999998887666789999999998 556666 589999999
Q ss_pred ee
Q 011224 488 FR 489 (490)
Q Consensus 488 ~~ 489 (490)
+.
T Consensus 344 ~~ 345 (368)
T 1mda_H 344 AA 345 (368)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 236
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=3.6e-06 Score=89.31 Aligned_cols=310 Identities=9% Similarity=0.069 Sum_probs=195.4
Q ss_pred eeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 011224 145 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 224 (490)
Q Consensus 145 V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~ 224 (490)
|.++...+++.+.+ |+.++-|..|+..++... .... ......|.++...+++.+.+ |+.++.
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~--------------~~~~--~~~~~~i~~i~~d~~g~lwi-gt~~~G 236 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE--------------KVIP--ILGTKQIQAILQQSPTRIWV-ATEGAG 236 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE--------------ECC------CCCEEEEEEEETTEEEE-EEBSSC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE--------------EecC--CCCCCeeEEEEEcCCCCEEE-EECCCC
Confidence 88888888887655 555545888886554210 0000 01234688888877776555 444445
Q ss_pred EEEEECCCceeEEecC--------CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee-------eccCeEE
Q 011224 225 ARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLD 289 (490)
Q Consensus 225 i~iw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~ 289 (490)
+.+|+........+.. ....|.++...++|...+ |+.+ -|.+||..++.+...... ....+.+
T Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 314 (795)
T 4a2l_A 237 LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRS 314 (795)
T ss_dssp EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEE
T ss_pred eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEE
Confidence 8888876654333321 135699999888877554 4444 588999887765432211 1234666
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEecC-------CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeee
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 362 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 362 (490)
+....+..+-.++.++-|..++...... ..+.. ....|.++...++|.+. .|+.++-|..|+..++....-
T Consensus 315 i~~D~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~ 392 (795)
T 4a2l_A 315 IFMDSQGGMWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSY 392 (795)
T ss_dssp EEECTTSCEEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEE
T ss_pred EEEeCCcCEEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEE
Confidence 6666666666677666777776544322 22211 23468999998888754 577777899999877654332
Q ss_pred ecc--------ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee----CCCCCEEEEEECCCC
Q 011224 363 LRE--------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHREPVYSLAFSPTG 430 (490)
Q Consensus 363 ~~~--------~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~spdg 430 (490)
... ....|.++...+++. +|-.|+.++-|..||..+++...-.. .....|.++...++|
T Consensus 393 ~~~~~~~~~~l~~~~v~~i~~d~~g~---------~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 463 (795)
T 4a2l_A 393 TLQEDESARGIGSNNIKAVYVDEKKS---------LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG 463 (795)
T ss_dssp CCC------CCSCSCEEEEEEETTTT---------EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS
T ss_pred ecCCCCcccCCCCccEEEEEEcCCCC---------EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC
Confidence 111 235688888776663 25567777789999988776433221 124579999999998
Q ss_pred CEEEEEeCCCcEEEEEcCCCeEEEEEec-------CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 431 EYLASGSLDKSMHIWSLKEGKIVKTYTG-------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 431 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~-------~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+.+... . -|.+|+..+++....... ...|.++...++|++.++.. +.|.+||.+
T Consensus 464 ~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~ 525 (795)
T 4a2l_A 464 NLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQE 525 (795)
T ss_dssp CEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEE
T ss_pred CEEEEec-C-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCC
Confidence 8666544 4 488999888765432211 24589999999998766554 457777753
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.09 E-value=6.6e-06 Score=87.32 Aligned_cols=314 Identities=10% Similarity=0.055 Sum_probs=196.9
Q ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeee-cccccCCCCeEEEEEcCCCCEEEEEe
Q 011224 142 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRTNEKSKDVTTLDWNGEGTLLATGS 220 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~~~~s~~~~~l~sg~ 220 (490)
...|.++...++|.+.+ |+.++-|.+|+..++... ...... .........|.++...++|.+.+. +
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t 280 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIK-----------NYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-T 280 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEE-----------EECCCTTCTTSCSCSBEEEEEECTTSCEEEE-E
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEE-----------EeecCCCCccccCCCeEEEEEEcCCCCEEEE-e
Confidence 45688888877777655 443434888886543210 000000 001112456999999988886654 4
Q ss_pred CCCeEEEEECCCceeEEecC--------CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee------eccC
Q 011224 221 YDGQARIWSTNGDLKCTLSK--------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGP 286 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~~~~~~--------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------~~~~ 286 (490)
.+ -|.+|+........+.. ....|.++...++|. |..|+.++-|..|+..+..+...... ....
T Consensus 281 ~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~ 358 (795)
T 4a2l_A 281 FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNV 358 (795)
T ss_dssp SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSS
T ss_pred CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCe
Confidence 44 58888876554433321 235799999888876 55566777789998876654322111 1234
Q ss_pred eEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec-C--------CCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCC
Q 011224 287 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-G--------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~--------h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~ 357 (490)
+.++....+..+-.++.++-+..++....... .+. . ....|.++...+++++|..|+.++-|.+||..++
T Consensus 359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~ 437 (795)
T 4a2l_A 359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG 437 (795)
T ss_dssp EEEEEECTTSCEEEEESSSCEEEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence 66666655556666777767888876654322 221 1 1356889999888885667788778999998877
Q ss_pred ceeeeec----cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC------CCCCEEEEEEC
Q 011224 358 KYVHDLR----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG------HREPVYSLAFS 427 (490)
Q Consensus 358 ~~~~~~~----~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~------h~~~v~~l~~s 427 (490)
+...-.. .....|.++...+++. |-.|+. +-|.+||..+++....... ....|.++...
T Consensus 438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~----------lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 438 QVENFNQRNSQLVNENVYAILPDGEGN----------LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp CEEEECTTTSCCSCSCEEEEEECSSSC----------EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred cEEEeecCCCCcCCCeeEEEEECCCCC----------EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 6433211 1245688888877764 333445 4588899887655332211 23579999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEEec--------CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 428 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG--------NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 428 pdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~--------~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
++|.+.+... +-|..|+..+++. .+.. ...|.++...++|++.++.. + .|..||.
T Consensus 507 ~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~ 569 (795)
T 4a2l_A 507 SHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE 569 (795)
T ss_dssp TTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred CCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence 9998776554 4588899887766 3321 23588999999998665543 3 5777764
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.04 E-value=1.3e-07 Score=90.44 Aligned_cols=219 Identities=13% Similarity=0.170 Sum_probs=143.9
Q ss_pred CCCCEEE-EEeCCCeEEEEEccCc----ceeEeee---e----eccCeEEEEccCCceEEEEcCC------CeEEEEEcC
Q 011224 252 KKGDYLL-TGSCDKTAIVWDVKTE----EWKQQFE---F----HSGPTLDVDWRNNVSFATSSTD------NMIYVCKIG 313 (490)
Q Consensus 252 ~~~~~l~-s~s~D~~v~iwd~~~~----~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~d------~~i~~~~~~ 313 (490)
++.++|+ +|-.+.+|.++|+.+. +.+.+++ . .......+....+..++++..+ +.+.+.|..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 6777765 5667889999998765 4455442 0 0112233344344455555444 789999999
Q ss_pred CCcceeEecCCC---CCeeEEEEcCCCCEEEEEe-------------------CCCeEEEEecCCCceeeeeccc--ccc
Q 011224 314 ENRPIKTFAGHQ---GEVNCVKWDPTGSLLASCS-------------------DDVTAKIWNMKQDKYVHDLREH--SKE 369 (490)
Q Consensus 314 ~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~~~~--~~~ 369 (490)
+.+.+..+.... ..-..+.|+|+++.+++.. ...+|.+||+.+++.+.++... ...
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~ 252 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM 252 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence 888887775221 2233578899999888874 3689999999998877776542 123
Q ss_pred EEEEEE--cCCCCCCCCCCCcEEEEEEE-----CCCcEEEEeCCCCeE--EEE--eeCC----------------CCCEE
Q 011224 370 IYTIRW--SPTGSGTNNPNQQLILASAS-----FDSTVKLWDVELGKL--LYS--LNGH----------------REPVY 422 (490)
Q Consensus 370 i~~v~~--~p~g~~~~~~~~~~~l~sgs-----~dg~i~iwd~~~~~~--~~~--~~~h----------------~~~v~ 422 (490)
...++| +|++. ...+++- .+++|.+|....+.. ... +... .....
T Consensus 253 P~~i~f~~~Pdg~--------~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 253 ALELRPLHDPTKL--------MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp EEEEEECSSTTCC--------EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cceeEeeECCCCC--------EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 344555 88775 3445555 677888876655432 111 1110 13467
Q ss_pred EEEECCCCCEEEEEeC-CCcEEEEEcCC---CeEEEEEecCC---------------CEEEEEECCCCCEEEEEE
Q 011224 423 SLAFSPTGEYLASGSL-DKSMHIWSLKE---GKIVKTYTGNG---------------GIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 423 ~l~~spdg~~l~s~s~-dg~i~iw~~~~---~~~~~~~~~~~---------------~v~~~~~~~~g~~la~~~ 478 (490)
.|.+||||++|.++.. .+.|.+|++.+ .+++..+...+ ....++++|||++|.++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999977664 68999999853 35666654331 357899999999988887
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=1.3e-07 Score=84.98 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=130.0
Q ss_pred EEEEEecCCCCEEEEEeC--CCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec
Q 011224 245 IFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 322 (490)
Q Consensus 245 V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 322 (490)
..+|.|++++..+++.+. +++|.++|+.+++....+....
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-------------------------------------- 64 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-------------------------------------- 64 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT--------------------------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC--------------------------------------
Confidence 579999998644444433 5799999999988665443210
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEE
Q 011224 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402 (490)
Q Consensus 323 ~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~i 402 (490)
......+++. .+++.++.-.++.+.++|..+.+.+.++......-.. .++++. .++++ ..++.|.+
T Consensus 65 --~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~--------~l~vs-~gs~~l~v 130 (266)
T 2iwa_A 65 --SYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWG--LATDGK--------ILYGS-DGTSILYE 130 (266)
T ss_dssp --TCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCE--EEECSS--------SEEEE-CSSSEEEE
T ss_pred --CcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEE--EEECCC--------EEEEE-CCCCeEEE
Confidence 0011234444 2344555557889999999998888877533112223 334553 13343 46889999
Q ss_pred EeCCCCeEEEEeeCCC-----CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecC--------------CCEE
Q 011224 403 WDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN--------------GGIF 463 (490)
Q Consensus 403 wd~~~~~~~~~~~~h~-----~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~--------------~~v~ 463 (490)
+|..+.+.+..+.-.. ..++.+.|. +|...+....++.|.+-|..+++++..+... ...+
T Consensus 131 iD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~n 209 (266)
T 2iwa_A 131 IDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLN 209 (266)
T ss_dssp ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEE
T ss_pred EECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceE
Confidence 9999988877765221 136788888 7766666656889999999999999888532 2568
Q ss_pred EEEECCCCCEE-EEEECCCcEEEEEee
Q 011224 464 EVCWNKEGDKI-AACFANHTVCVLDFR 489 (490)
Q Consensus 464 ~~~~~~~g~~l-a~~~~d~~v~v~~~~ 489 (490)
.++|+|+++.| +++.....|.+++++
T Consensus 210 GIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 210 GIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 99999999755 556667889998875
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=6.1e-08 Score=100.44 Aligned_cols=269 Identities=12% Similarity=0.068 Sum_probs=169.4
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEEecCCCC----------CE-EEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 213 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
+..++.++.++.|..+|.. ++.+..+..... .+ .++.+ .+..++.++.|+.|..+|..+++.+-.+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4456667778888888864 455444432211 00 11122 2467888999999999999999877665
Q ss_pred eeecc----CeE-EEEccCCceEEEEcC-----CCeEEEEEcCCCcceeEecCC---C----------------------
Q 011224 281 EFHSG----PTL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGH---Q---------------------- 325 (490)
Q Consensus 281 ~~~~~----~~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h---~---------------------- 325 (490)
..... .+. ......+..++..+. ++.|+.+|..+++.+-.+... .
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 54210 000 000123333333322 588999999888877655321 0
Q ss_pred ------CCeeEEEEcCCCCEEEEEeCCCe-------------------EEEEecCCCceeeeecc--cc-------ccEE
Q 011224 326 ------GEVNCVKWDPTGSLLASCSDDVT-------------------AKIWNMKQDKYVHDLRE--HS-------KEIY 371 (490)
Q Consensus 326 ------~~v~~v~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~--~~-------~~i~ 371 (490)
.....+++.|...+++.++.++. |..+|..+++.+-.++. |. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 01124788888888888887764 89999999988766543 21 1221
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC------------CCE------------------
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR------------EPV------------------ 421 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~------------~~v------------------ 421 (490)
......+|. ...+++.++.+|.++++|..+|+.+....... .++
T Consensus 304 ~~d~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~ 377 (668)
T 1kv9_A 304 LAELNIDGK------PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSP 377 (668)
T ss_dssp EEEEEETTE------EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCT
T ss_pred EEEeccCCc------EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCC
Confidence 111112331 01257889999999999999999885543211 001
Q ss_pred ------EEEEECCCCCEEEEE------------------------------------eCCCcEEEEEcCCCeEEEEEecC
Q 011224 422 ------YSLAFSPTGEYLASG------------------------------------SLDKSMHIWSLKEGKIVKTYTGN 459 (490)
Q Consensus 422 ------~~l~~spdg~~l~s~------------------------------------s~dg~i~iw~~~~~~~~~~~~~~ 459 (490)
..++|+|+..++... ..+|.|..||+.+|+.+..+...
T Consensus 378 ~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~ 457 (668)
T 1kv9_A 378 FGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP 457 (668)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES
T ss_pred ccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC
Confidence 126778876655431 13488999999999998877654
Q ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 460 GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 460 ~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.......+...|.++++++.++.|++||.+
T Consensus 458 ~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~ 487 (668)
T 1kv9_A 458 THWNGGTLSTAGNLVFQGTAAGQMHAYSAD 487 (668)
T ss_dssp SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence 444445566678899999999999999865
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.91 E-value=9.3e-07 Score=89.66 Aligned_cols=252 Identities=14% Similarity=0.150 Sum_probs=149.5
Q ss_pred CCEEEEEeCCCeEEEEECC-CceeEEec--CCCC--CEEEEEecC--CCCEEEEEeC------CCeEEEEEccCcceeEe
Q 011224 213 GTLLATGSYDGQARIWSTN-GDLKCTLS--KHKG--PIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 213 ~~~l~sg~~dg~i~iw~~~-~~~~~~~~--~h~~--~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~ 279 (490)
+..++.++.|+.+..+|.. ++...... .+.. .+. -+| .+..++.++. ++.|..+|..+++.+-.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~---~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLT---QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCC---SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceec---cCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 5577888889999999974 55544432 2110 111 111 1345666654 79999999999987765
Q ss_pred eeeeccC----------------------------------------eEEEEccCCceEEEEcC-----------C----
Q 011224 280 FEFHSGP----------------------------------------TLDVDWRNNVSFATSST-----------D---- 304 (490)
Q Consensus 280 ~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~-----------d---- 304 (490)
+...... ...++...+..++..+. +
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeE
Confidence 5432110 01222222333333321 2
Q ss_pred CeEEEEEcCCCcceeEecC--CC--------CCeeEEEEcCCCC---EEEEEeCCCeEEEEecCCCceeeeecccc----
Q 011224 305 NMIYVCKIGENRPIKTFAG--HQ--------GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS---- 367 (490)
Q Consensus 305 ~~i~~~~~~~~~~~~~~~~--h~--------~~v~~v~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---- 367 (490)
+.|+.++..+++.+-.+.. |. .++ -+...++|+ .++.++.+|.+.++|..+++.+..+....
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 3588888888887665542 21 122 123334674 67788999999999999998876543221
Q ss_pred ---------ccEE--------------------------EEEEcCCCCCCCCCCCcEEEEEE------------------
Q 011224 368 ---------KEIY--------------------------TIRWSPTGSGTNNPNQQLILASA------------------ 394 (490)
Q Consensus 368 ---------~~i~--------------------------~v~~~p~g~~~~~~~~~~~l~sg------------------ 394 (490)
.++. .++++|+. .++++..
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--------g~~yv~~~~~~~~~~~~~~~~~~g~ 422 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--------RTLYAGLNHICMDWEPFMLPYRAGQ 422 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--------TEEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC--------CEEEEEchhccccccccccccccCC
Confidence 1111 12233322 2222221
Q ss_pred ------------------ECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 395 ------------------SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 395 ------------------s~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
..+|.|..||..+++.++++... .++....+...+..++.++.||.|+.||..+|+++..+
T Consensus 423 ~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 423 FFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 14588999999999999887632 22332223334567777999999999999999999888
Q ss_pred ecCCCE--EEEEECCCCCEEEEE
Q 011224 457 TGNGGI--FEVCWNKEGDKIAAC 477 (490)
Q Consensus 457 ~~~~~v--~~~~~~~~g~~la~~ 477 (490)
.....+ ..+.+..+|+.+++.
T Consensus 502 ~~~~~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 502 KMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEE
T ss_pred eCCCCcEeeeEEEEECCEEEEEE
Confidence 654332 234466788755543
No 242
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.91 E-value=6.6e-07 Score=90.80 Aligned_cols=269 Identities=10% Similarity=0.029 Sum_probs=160.4
Q ss_pred CEEEEEeC-CCeEEEEEC--CCceeEEecCCCC-----------CEEEEEecCCCCE----EEEEeCCCeEEEEEccCcc
Q 011224 214 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG-----------PIFSLKWNKKGDY----LLTGSCDKTAIVWDVKTEE 275 (490)
Q Consensus 214 ~~l~sg~~-dg~i~iw~~--~~~~~~~~~~h~~-----------~V~~l~~~~~~~~----l~s~s~D~~v~iwd~~~~~ 275 (490)
..++.++. ++.|..+|. .++.+..+..... ...++++.|.+.. ++.++.|+.|..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 44555555 777777776 4555444332111 0123445444444 8889999999999999998
Q ss_pred eeEeeeeecc----CeE-EEEccCCceEEEEc-----CCCeEEEEEcCCCcceeEecCCCCC------------------
Q 011224 276 WKQQFEFHSG----PTL-DVDWRNNVSFATSS-----TDNMIYVCKIGENRPIKTFAGHQGE------------------ 327 (490)
Q Consensus 276 ~~~~~~~~~~----~~~-~~~~~~~~~~~~~~-----~d~~i~~~~~~~~~~~~~~~~h~~~------------------ 327 (490)
.+-....... .+. .-...++..++.++ .++.|+.+|..+++.+-.+......
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~ 222 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccc
Confidence 7655443210 000 00012333333332 3789999999888776554321110
Q ss_pred -------------------e-eEEEEcCCCCEEEEEeCC----------------CeEEEEecCCCceeeeeccccc---
Q 011224 328 -------------------V-NCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLREHSK--- 368 (490)
Q Consensus 328 -------------------v-~~v~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~--- 368 (490)
+ ..+++.+...+|+.++.+ +.|..+|..+++.+-.++....
T Consensus 223 ~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~w 302 (599)
T 1w6s_A 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW 302 (599)
T ss_dssp TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccc
Confidence 0 135566777777777665 3789999999988765543211
Q ss_pred -------cEEEEEEc-CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-------------CCE------
Q 011224 369 -------EIYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------------EPV------ 421 (490)
Q Consensus 369 -------~i~~v~~~-p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-------------~~v------ 421 (490)
++. +... .+|. ...+++.++.+|.+.++|..+|+.+....-.. .+|
T Consensus 303 d~d~~~~p~l-~d~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 303 DYAGVNVMML-SEQKDKDGK------ARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp CCCCCCCCEE-EEEECTTSC------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred cccCCCccEE-EeccccCCc------EEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccC
Confidence 111 1111 2231 01367778999999999999999988764211 111
Q ss_pred --------------------EEEEECCCCCEEEEE---------------------------------e------CCCcE
Q 011224 422 --------------------YSLAFSPTGEYLASG---------------------------------S------LDKSM 442 (490)
Q Consensus 422 --------------------~~l~~spdg~~l~s~---------------------------------s------~dg~i 442 (490)
..++|+|+..++++. + .+|.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 235677776655442 1 35789
Q ss_pred EEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 443 HIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 443 ~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
..||+.+|+++..........+-.....|.++..++.|+.|+.||.+
T Consensus 456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~ 502 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSD 502 (599)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECC
Confidence 99999999998777533222221223456777778899999998864
No 243
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.90 E-value=3.5e-07 Score=94.77 Aligned_cols=307 Identities=12% Similarity=0.148 Sum_probs=174.4
Q ss_pred CCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCe-EEEEEcCCCCEEEEEeCCCeEEEEECC-
Q 011224 154 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTN- 231 (490)
Q Consensus 154 ~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V-~~~~~s~~~~~l~sg~~dg~i~iw~~~- 231 (490)
+..|+.++.++.|.-+|..+|+......... ............+ ..+++ .+..++.++.|+.|..+|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~t 136 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEV-------AKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKT 136 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCC-------CGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTT
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCC-------CccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCC
Confidence 5667777788889999988876432111000 0000000000000 01111 24578888899999999965
Q ss_pred CceeEEecCCC-CCEEEEEecC--CCCEEEEEeC------CCeEEEEEccCcceeEeeeeec-cC---------------
Q 011224 232 GDLKCTLSKHK-GPIFSLKWNK--KGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHS-GP--------------- 286 (490)
Q Consensus 232 ~~~~~~~~~h~-~~V~~l~~~~--~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~~~-~~--------------- 286 (490)
++....+.... .....+...| .+..++.+.. ++.|..+|+.+++.+-.+.... .+
T Consensus 137 G~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 137 GKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp CCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred CCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 55555443311 0000000111 1345555543 5899999999998776664311 00
Q ss_pred -----------------eEEEEccCCceEEEEcCCC-------------------eEEEEEcCCCcceeEecC--CC---
Q 011224 287 -----------------TLDVDWRNNVSFATSSTDN-------------------MIYVCKIGENRPIKTFAG--HQ--- 325 (490)
Q Consensus 287 -----------------~~~~~~~~~~~~~~~~~d~-------------------~i~~~~~~~~~~~~~~~~--h~--- 325 (490)
...++...+ .+..+..++ .|+.+|..+++.+-.+.. |.
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred CCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence 011221223 333343333 488888888887766643 22
Q ss_pred ----CCeeEEEEcCCCC---EEEEEeCCCeEEEEecCCCceeeeecccc------------ccEE---------------
Q 011224 326 ----GEVNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVHDLREHS------------KEIY--------------- 371 (490)
Q Consensus 326 ----~~v~~v~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~i~--------------- 371 (490)
.+.....+..+|+ .++.++.+|.+.++|..+++.+....... .++.
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 2233333444675 68899999999999999998874332211 0000
Q ss_pred ---------EEEEcCCCCCCCCCCCcEEEE-----------------------------------EEECCCcEEEEeCCC
Q 011224 372 ---------TIRWSPTGSGTNNPNQQLILA-----------------------------------SASFDSTVKLWDVEL 407 (490)
Q Consensus 372 ---------~v~~~p~g~~~~~~~~~~~l~-----------------------------------sgs~dg~i~iwd~~~ 407 (490)
.++++|+. ..+.+ ....+|.|..||+.+
T Consensus 376 ~~~G~~~w~~~a~dp~~--------g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t 447 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGT--------GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK 447 (668)
T ss_dssp CTTCSSCSSCCEEETTT--------TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT
T ss_pred CCccccCCCcceECCCC--------CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC
Confidence 02222221 12211 112348899999999
Q ss_pred CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCE--EEEEECCCCC-EEEEEEC
Q 011224 408 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--FEVCWNKEGD-KIAACFA 479 (490)
Q Consensus 408 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v--~~~~~~~~g~-~la~~~~ 479 (490)
++.+++...+ .++....+...+.+++.|+.|+.|++||..+|+++..+.....+ .-+.+..+|+ +++.+..
T Consensus 448 G~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 448 QKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp TEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 9999887643 23333344556788999999999999999999999888654432 2345566776 5555553
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=7e-07 Score=83.81 Aligned_cols=236 Identities=12% Similarity=0.054 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecC--------------------CCCCEEEEEecCCCCEEEEEeCC
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------------------HKGPIFSLKWNKKGDYLLTGSCD 263 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~--------------------h~~~V~~l~~~~~~~~l~s~s~D 263 (490)
..+++|.++|++++++..++.|..|+..+.....+.. ....+.++++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4567899999978888889999999877643333221 11357899999733456656555
Q ss_pred CeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEE
Q 011224 264 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLAS 342 (490)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s 342 (490)
+.+..+|..++.... +.... ... .....+.+++.+ +|++.++
T Consensus 101 ~~i~~~d~~~g~~~~-~~~~~-----------------------------~~~-------~~~~p~~i~~d~~~G~l~v~ 143 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQ-LATSV-----------------------------DGV-------PFKWLYAVTVDQRTGIVYFT 143 (322)
T ss_dssp TEEEEECTTCEECEE-EESEE-----------------------------TTE-------ECSCEEEEEECTTTCCEEEE
T ss_pred CCEEEEeCCCCEEEE-ecccC-----------------------------CCC-------cccccceEEEecCCCEEEEE
Confidence 568888876543211 10000 000 011245566666 6665554
Q ss_pred EeC-----------------CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeC
Q 011224 343 CSD-----------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405 (490)
Q Consensus 343 ~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~ 405 (490)
-.. ++.|..||..+++...... .......++++|++. .++++-+..+.|..|++
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~--------~lyv~d~~~~~I~~~~~ 214 (322)
T 2fp8_A 144 DVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSS--------FVLVAEFLSHQIVKYWL 214 (322)
T ss_dssp ESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSS--------EEEEEEGGGTEEEEEES
T ss_pred CCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCC--------EEEEEeCCCCeEEEEEC
Confidence 322 3667778876554322111 112335688888875 23444456688999998
Q ss_pred CCC---eEEEEeeCCCCCEEEEEECCCCCEEEEEeC----------CCcEEEEEcCCCeEEEEEecC-----CCEEEEEE
Q 011224 406 ELG---KLLYSLNGHREPVYSLAFSPTGEYLASGSL----------DKSMHIWSLKEGKIVKTYTGN-----GGIFEVCW 467 (490)
Q Consensus 406 ~~~---~~~~~~~~h~~~v~~l~~spdg~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~-----~~v~~~~~ 467 (490)
... ... .+....+ ...|++.++|++.++... .+.|..++. +|+++..+... ..+..+++
T Consensus 215 ~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 215 EGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp SSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE
T ss_pred CCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE
Confidence 742 211 1111223 688999999987776544 467888886 47777777542 23566666
Q ss_pred CCCCCEEEEEECCCcEEEEEee
Q 011224 468 NKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+|++.++...++.|.++++.
T Consensus 292 -~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 292 -HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp -ETTEEEEECSSCSEEEEEEC-
T ss_pred -eCCEEEEeecCCCceEEEecc
Confidence 466666666778889998764
No 245
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.89 E-value=6.4e-07 Score=90.86 Aligned_cols=267 Identities=11% Similarity=0.075 Sum_probs=161.1
Q ss_pred CEEEEEeC-CCeEEEEEC--CCceeEEecCCCC----------CE-EEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe
Q 011224 214 TLLATGSY-DGQARIWST--NGDLKCTLSKHKG----------PI-FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279 (490)
Q Consensus 214 ~~l~sg~~-dg~i~iw~~--~~~~~~~~~~h~~----------~V-~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 279 (490)
..++.++. ++.|..+|. .++.+..+..... .+ .++.. .+..++.++.|+.+..+|..+++.+-.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 34555555 777888886 4455444322110 00 11222 356788888999999999999987655
Q ss_pred eeeecc----CeE-EEEccCCceEEEEcC-----CCeEEEEEcCCCcceeEecCCCCC----------------------
Q 011224 280 FEFHSG----PTL-DVDWRNNVSFATSST-----DNMIYVCKIGENRPIKTFAGHQGE---------------------- 327 (490)
Q Consensus 280 ~~~~~~----~~~-~~~~~~~~~~~~~~~-----d~~i~~~~~~~~~~~~~~~~h~~~---------------------- 327 (490)
+..... .+. .....++..++.+.. ++.|+.+|..+++.+-.+......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g 220 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence 543210 010 000123444444432 789999999888776554321100
Q ss_pred ----------------eeEEEEcCCCCEEEEEeCC----------------CeEEEEecCCCceeeeecccc--------
Q 011224 328 ----------------VNCVKWDPTGSLLASCSDD----------------VTAKIWNMKQDKYVHDLREHS-------- 367 (490)
Q Consensus 328 ----------------v~~v~~~~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~-------- 367 (490)
...+++.+....+..++.+ +.|..+|..+++.+-.++...
T Consensus 221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~ 300 (571)
T 2ad6_A 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccccc
Confidence 0235666766666666532 358899999998776554221
Q ss_pred --ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-------------CCE-----------
Q 011224 368 --KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------------EPV----------- 421 (490)
Q Consensus 368 --~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-------------~~v----------- 421 (490)
.++. +...++|. ...+++.++.+|.+.++|..+|+.+....-.. .+|
T Consensus 301 ~~~p~l-~~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 301 VNQMVL-TDQPVNGK------MTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCEE-EEEEETTE------EEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred CCCCEE-EecccCCc------EEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1111 11112221 00256778899999999999999988764221 112
Q ss_pred ---------------EEEEECCCCCEEEEEe-------------------------------------CCCcEEEEEcCC
Q 011224 422 ---------------YSLAFSPTGEYLASGS-------------------------------------LDKSMHIWSLKE 449 (490)
Q Consensus 422 ---------------~~l~~spdg~~l~s~s-------------------------------------~dg~i~iw~~~~ 449 (490)
..++|+|+..+|...+ .+|.|..||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 2367888877666543 357899999999
Q ss_pred CeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 450 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 450 ~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
|+.+..+.....+.+......+.++..++.|+.|.+||.+
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETT
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECC
Confidence 9998887654433333334456777788999999999864
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.87 E-value=5.8e-07 Score=79.80 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=127.4
Q ss_pred EEEEEecCCCCEEEEEeCCC--eEEEEEccCcceeEeeeeeccCe-EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe
Q 011224 245 IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 321 (490)
Q Consensus 245 V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 321 (490)
..+|.|+ ++..+.+.+.+| +|+++|+.+++....+....... ..+....+..+++.-.++.++++|..+.+.+..+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 4788898 565566777666 89999999999888876544332 2355567777788888999999999999888887
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc-----ccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 322 ~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
.... .-..++ ++++.|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +|. +.+..-.
T Consensus 124 ~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~---------lyan~w~ 190 (262)
T 3nol_A 124 NYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE---------IFANVWQ 190 (262)
T ss_dssp ECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETT
T ss_pred ECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE---------EEEEEcc
Confidence 6422 222333 567666665567889999999988877665421 223446664 442 4455556
Q ss_pred CCcEEEEeCCCCeEEEEeeCC------------CCCEEEEEECCCCCEEEEEeC
Q 011224 397 DSTVKLWDVELGKLLYSLNGH------------REPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~h------------~~~v~~l~~spdg~~l~s~s~ 438 (490)
++.|.+.|..+++.+..+.-. ....+.|||+|+++.|...+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 889999999999998877532 124589999998877666553
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.86 E-value=2.1e-06 Score=87.11 Aligned_cols=258 Identities=13% Similarity=0.141 Sum_probs=145.6
Q ss_pred EEEEeCCCeEEEEECC-CceeEEecCCC--C--CEEE-EEecCCCCEEEEEe------CCCeEEEEEccCcceeEeeeee
Q 011224 216 LATGSYDGQARIWSTN-GDLKCTLSKHK--G--PIFS-LKWNKKGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 216 l~sg~~dg~i~iw~~~-~~~~~~~~~h~--~--~V~~-l~~~~~~~~l~s~s------~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
++.++.|+.+..+|.. ++.+....... . .+++ ... .+ ..++.++ .++.|+.+|..+++.+-.+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-EC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7788889999999964 45444332111 0 1111 001 13 3555555 3899999999999876655432
Q ss_pred ccC----------------------------------------eEEEEccCCceEEEEcC---------------CCeEE
Q 011224 284 SGP----------------------------------------TLDVDWRNNVSFATSST---------------DNMIY 308 (490)
Q Consensus 284 ~~~----------------------------------------~~~~~~~~~~~~~~~~~---------------d~~i~ 308 (490)
... ...++...+..++..+. ...|+
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 110 01222223333433332 14788
Q ss_pred EEEcCCCcceeEecC--CC--------CCeeEEEEc-CCC---CEEEEEeCCCeEEEEecCCCceeeeecccc-------
Q 011224 309 VCKIGENRPIKTFAG--HQ--------GEVNCVKWD-PTG---SLLASCSDDVTAKIWNMKQDKYVHDLREHS------- 367 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~--h~--------~~v~~v~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------- 367 (490)
.++..+++.+-.+.. |. .++ -+... .+| +.++.++.+|.+.++|..+++.+.......
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 889888887665543 21 112 12332 567 567889999999999999998876543211
Q ss_pred ------ccEE--------------------------EEEEcCCCCCCC----------------CCCCcEE------EEE
Q 011224 368 ------KEIY--------------------------TIRWSPTGSGTN----------------NPNQQLI------LAS 393 (490)
Q Consensus 368 ------~~i~--------------------------~v~~~p~g~~~~----------------~~~~~~~------l~s 393 (490)
.++. .++++|+..... ......+ +..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 1110 122222211000 0000000 011
Q ss_pred --EE------CCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCE--E
Q 011224 394 --AS------FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI--F 463 (490)
Q Consensus 394 --gs------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v--~ 463 (490)
.+ ..|.|..||+.+++.+++... ..++..-.....+.+++.++.|+.|+.||.++|+++..+....++ .
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~ 519 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGY 519 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEec
Confidence 01 458899999999999988752 122221112224667778999999999999999999888654332 2
Q ss_pred EEEECCCCC-EEEEE
Q 011224 464 EVCWNKEGD-KIAAC 477 (490)
Q Consensus 464 ~~~~~~~g~-~la~~ 477 (490)
-+.|..+|+ ++++.
T Consensus 520 P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 520 PMTYTHKGTQYVAIY 534 (599)
T ss_dssp CEEEEETTEEEEEEE
T ss_pred cEEEEeCCEEEEEEE
Confidence 356677887 44443
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.84 E-value=4.8e-07 Score=89.73 Aligned_cols=183 Identities=9% Similarity=0.070 Sum_probs=126.4
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecC-CCCCeeEEEE-c-CCCCEEEEEe------------------CCCeEEEEec
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKW-D-PTGSLLASCS------------------DDVTAKIWNM 354 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~-h~~~v~~v~~-~-~~~~~l~s~~------------------~dg~i~iwd~ 354 (490)
..|+....+..|.+.|+...+..+.+.- .......+++ + |+++++++++ .++.+.+.|.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 3466667778899999988887664431 2234778887 5 9999998885 2457899999
Q ss_pred CCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-------------------------------------
Q 011224 355 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD------------------------------------- 397 (490)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d------------------------------------- 397 (490)
.+.+.+.++.... ....++.+|+|. ++++.+.+
T Consensus 183 ~t~~v~~qI~Vgg-~pd~~~~spdGk---------~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 183 DKWEVAWQVLVSG-NLDNCDADYEGK---------WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp TTTEEEEEEEESS-CCCCEEECSSSS---------EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CCCeEEEEEEeCC-CccceEECCCCC---------EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 9888777665322 234456777765 33333322
Q ss_pred -CcEEEEeCCC--CeE-EEEeeCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEcCCCe------------EEEEEecCC
Q 011224 398 -STVKLWDVEL--GKL-LYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKEGK------------IVKTYTGNG 460 (490)
Q Consensus 398 -g~i~iwd~~~--~~~-~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~~~------------~~~~~~~~~ 460 (490)
+.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ ++.......
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred ECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 2477777776 444 344432 12346799999999876654 67899999998653 445555556
Q ss_pred CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 461 GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 461 ~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+...++|+|+|....+.+.+.+|.+||+.
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence 78999999999555677889999999963
No 249
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=3.5e-05 Score=81.54 Aligned_cols=321 Identities=11% Similarity=0.038 Sum_probs=188.1
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
..|+++...++|.+.+ |+..+-|.+++..+........ . ....+.............|.++....+|.+ -.|+.+
T Consensus 258 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~--~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~ 332 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQ-I--RFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWG 332 (781)
T ss_dssp CCEEEEEECTTSEEEE-EESSSCEEEEETTCC------------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBS
T ss_pred ceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeec-c--ccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecC
Confidence 5688998888877554 5554557888876543110000 0 000000000011123456999999888874 456767
Q ss_pred CeEEEEECCCceeEEec----------CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee---eeeccCeEE
Q 011224 223 GQARIWSTNGDLKCTLS----------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---EFHSGPTLD 289 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---~~~~~~~~~ 289 (490)
+-|..++........+. .....|.++...+++. |..|+.++-|..||..++.+.... ......+.+
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC 411 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence 77888887644332221 1235689998887775 455665666888998765433211 112234556
Q ss_pred EEccCCceEEEEcCCCeEEEEEcCCCcceeEec---CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccc
Q 011224 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 366 (490)
Q Consensus 290 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 366 (490)
+....+..+..++.++.++.++..+++. ..+. .....|.++...++|.+.+ |+. +-|.+||..+++........
T Consensus 412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~ 488 (781)
T 3v9f_A 412 SLKDSEGNLWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTS 488 (781)
T ss_dssp EEECTTSCEEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTT
T ss_pred EEECCCCCEEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCc
Confidence 6555444555566556677777655432 2222 1345788999888887554 445 56888998776543322111
Q ss_pred -----cccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-C---CCCCEEEEEECCCCCEEEEEe
Q 011224 367 -----SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G---HREPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 367 -----~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~---h~~~v~~l~~spdg~~l~s~s 437 (490)
...|.++...++|. |-.|+..+-|..||..+++.. .+. . ....|.+|...++|.+.++..
T Consensus 489 ~~~~~~~~i~~i~~d~~g~----------lWigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~ 557 (781)
T 3v9f_A 489 NSQLLENFVRSIAQDSEGR----------FWIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG 557 (781)
T ss_dssp TSSCSCSCEEEEEECTTCC----------EEEEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred ccccccceeEEEEEcCCCC----------EEEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence 35688888887774 334555444777888766543 232 1 134689999999998666544
Q ss_pred CCCcEEEEEcCCCeEEEEEec-----CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 438 LDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 438 ~dg~i~iw~~~~~~~~~~~~~-----~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.|.|..|+..+++.. .+.. ...|.++...++|++.+++ .+| |..++
T Consensus 558 -~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~ 608 (781)
T 3v9f_A 558 -EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYI 608 (781)
T ss_dssp -TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEE
T ss_pred -CCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEE
Confidence 676588998777643 3321 1247788888888765554 343 55554
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.83 E-value=6.2e-05 Score=79.67 Aligned_cols=314 Identities=10% Similarity=0.032 Sum_probs=186.7
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeec-ccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
..|.++...++|.+.+. +.. -|.+|+..++.... ...... ........|.++...++|.+. .|+.
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~-----------~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~ 276 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTN-----------FHNNPGNIHGALSSYIFSIKQLKDNKLW-IATE 276 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC----------------------CCCCEEEEEECTTSEEE-EEES
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEE-----------EEcCCCccccccCceEEEEEECCCCCEE-EEeC
Confidence 46889998888886654 344 58889865432110 000000 001124569999988888755 4566
Q ss_pred CCeEEEEECCCceeEEec---------------CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeee-----
Q 011224 222 DGQARIWSTNGDLKCTLS---------------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE----- 281 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~---------------~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~----- 281 (490)
.+-|.+++........+. -....|.++...++|. |-.|+.++-|..++..+..+.....
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 355 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQM 355 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CC
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcccc
Confidence 456788887654322111 1345789998888776 5556667778889887655433211
Q ss_pred ----eeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEe----cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEe
Q 011224 282 ----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353 (490)
Q Consensus 282 ----~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~----~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd 353 (490)
.....+.++....+..+..++.++-+..++...... ..+ ......|.++...++|.+.+ |+.++-+..++
T Consensus 356 ~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 356 NESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVA-IYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp CSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEE-ECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred ccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeE-EEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 112345666555545555566555677777654321 111 12345788999888887654 67767788898
Q ss_pred cCCCceeeeec--cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC-----CCCEEEEEE
Q 011224 354 MKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH-----REPVYSLAF 426 (490)
Q Consensus 354 ~~~~~~~~~~~--~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~ 426 (490)
..+++...-.. .....|.++...+++. |-.|+. +-|..||..+++........ ...|.+|..
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~----------lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKK----------IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ 502 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSE----------EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCC----------EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence 87765432211 1345788888777663 334555 55888998766543322211 357999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-----CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-----~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.++|.+.+.....| |..|+..+++.. .+.. ...|.++...++|++.++.. +|-|..||
T Consensus 503 d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 503 DSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp CTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred cCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 99998766543344 777888766543 3322 23588999999998665543 44336665
No 251
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=1.5e-05 Score=72.45 Aligned_cols=222 Identities=11% Similarity=0.031 Sum_probs=133.2
Q ss_pred EEEEEeCCCeEEEEEccCccee-----EeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCe
Q 011224 256 YLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 328 (490)
Q Consensus 256 ~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v 328 (490)
+|+.+.. +.|+.+++...... ..+......+..+.+. .+..+++....+.|+.++.........+.......
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4554443 47888887664321 1122112233455554 45566777778899999987655433333333467
Q ss_pred eEEEEcCCCC-EEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC--CCcEEEEeC
Q 011224 329 NCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--DSTVKLWDV 405 (490)
Q Consensus 329 ~~v~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~--dg~i~iwd~ 405 (490)
.+++++|++. ++++....+.|.++++..................++++|++. .++++... .+.|..+++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g--------~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRG--------NLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTT--------EEEEEECCSSSCEEEEEET
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCC--------EEEEEECCCCCcEEEEEec
Confidence 8999999755 455556678999999865432211222224567889988543 13333332 468888887
Q ss_pred CCCeEEEEe-eCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcE
Q 011224 406 ELGKLLYSL-NGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 406 ~~~~~~~~~-~~h~~~v~~l~~spdg~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v 483 (490)
... ....+ .......+.|+++|++.+| ++-...+.|.++++.................++.. .+..+++...++.|
T Consensus 154 dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v 231 (267)
T 1npe_A 154 DGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSV 231 (267)
T ss_dssp TSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEE
T ss_pred CCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeE
Confidence 632 22222 2223457899999987665 45556689999999765544444444456777764 34455555667889
Q ss_pred EEEEe
Q 011224 484 CVLDF 488 (490)
Q Consensus 484 ~v~~~ 488 (490)
.++|.
T Consensus 232 ~~~d~ 236 (267)
T 1npe_A 232 IAMDL 236 (267)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 88875
No 252
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.81 E-value=4.8e-07 Score=86.65 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=125.8
Q ss_pred ceEEEEcCCCeEEEEEcCCC----cceeEec------C-CCCCeeEEEEcCCCCEEEEEeCC------CeEEEEecCCCc
Q 011224 296 VSFATSSTDNMIYVCKIGEN----RPIKTFA------G-HQGEVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDK 358 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~----~~~~~~~------~-h~~~v~~v~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 358 (490)
..++.+..++.|+++|+.+. +.++++. . ....-..+.+.|+| +++++..+ |.|.++|..+.+
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~ 175 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE 175 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe
Confidence 34567778899999998654 3444442 0 11134467788999 77776665 789999999999
Q ss_pred eeeeecccc---ccEEEEEEcCCCCCCCCCCCcEEEEEEE-------------------CCCcEEEEeCCCCeEEEEeeC
Q 011224 359 YVHDLREHS---KEIYTIRWSPTGSGTNNPNQQLILASAS-------------------FDSTVKLWDVELGKLLYSLNG 416 (490)
Q Consensus 359 ~~~~~~~~~---~~i~~v~~~p~g~~~~~~~~~~~l~sgs-------------------~dg~i~iwd~~~~~~~~~~~~ 416 (490)
.+.++.... .--+.+.|+|++. ++++.. ....|.+||+.+++.+.++.-
T Consensus 176 v~~~~~~~~~~~~~~Yd~~~~p~~~---------~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 176 PLGKWEIDRGDQYLAYDFWWNLPNE---------VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEEECCSBCTTCCCCCCEEEETTTT---------EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEEEccCCCCccccceEEECCCCC---------EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 888775322 2235577888875 455553 368999999999988887764
Q ss_pred C-C-CCEEEEEE--CCCCCEEEEEe------CCCcEEEEEcCCCeE--EEEE--ec-----------------CCCEEEE
Q 011224 417 H-R-EPVYSLAF--SPTGEYLASGS------LDKSMHIWSLKEGKI--VKTY--TG-----------------NGGIFEV 465 (490)
Q Consensus 417 h-~-~~v~~l~~--spdg~~l~s~s------~dg~i~iw~~~~~~~--~~~~--~~-----------------~~~v~~~ 465 (490)
- . .....|.| +|+++++..++ .+++|.+|....|+. .+.+ .. ...+..+
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 2 1 23345655 99999887666 567898887766542 2221 11 1336789
Q ss_pred EECCCCCEEEEE-ECCCcEEEEEe
Q 011224 466 CWNKEGDKIAAC-FANHTVCVLDF 488 (490)
Q Consensus 466 ~~~~~g~~la~~-~~d~~v~v~~~ 488 (490)
.+||||++|.++ ...+.|.|||+
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEe
Confidence 999999977655 55789999997
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.79 E-value=7.9e-06 Score=76.56 Aligned_cols=263 Identities=10% Similarity=0.039 Sum_probs=137.2
Q ss_pred ccccccceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeee---------c----ccccCCCCe
Q 011224 138 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK---------G----RTNEKSKDV 204 (490)
Q Consensus 138 l~~H~~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~V 204 (490)
+.+.-....+++|+++|++++++..++.|..|+..++.. . .+.... + ........+
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~---------~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~p 82 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF---------V--DFAYASPYWNKAFCENSTDAEKRPLCGRT 82 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE---------E--EEEESCTTCCHHHHTTCCCGGGHHHHCCE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce---------E--EEecccccccccccccccchhccccCCCC
Confidence 333334457889999999888888899999998754321 0 000000 0 000011347
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCceeEEecCC-----CCCEEEEEecC-CCCEEEEEeCCCeEEEEEccCccee
Q 011224 205 TTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 205 ~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h-----~~~V~~l~~~~-~~~~l~s~s~D~~v~iwd~~~~~~~ 277 (490)
..+++.+ +++ |+.+...+.+..++..+.....+... ......+++.+ +|+..++-.... +.... ..
T Consensus 83 ~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~~--~~ 155 (322)
T 2fp8_A 83 YDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDRG--VQ 155 (322)
T ss_dssp EEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTTC--HH
T ss_pred ceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccc----ccccc--cc
Confidence 8899997 555 45555555688888765433333211 12356677777 665544432210 00000 00
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEE-EEeCCCeEEEEecCC
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ 356 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~~~ 356 (490)
. .++.....+.|+.++....... .+.......+.++++|+++.|. +-+..+.|.+|++..
T Consensus 156 ~------------------~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 156 Q------------------IMDTSDKTGRLIKYDPSTKETT-LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp H------------------HHHHTCCCEEEEEEETTTTEEE-EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred e------------------ehcccCCCceEEEEeCCCCEEE-EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 0 0000001122333332222111 1111112346799999998554 445678999999875
Q ss_pred Cc--eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE---------CCCcEEEEeCCCCeEEEEeeCC----CCCE
Q 011224 357 DK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS---------FDSTVKLWDVELGKLLYSLNGH----REPV 421 (490)
Q Consensus 357 ~~--~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs---------~dg~i~iwd~~~~~~~~~~~~h----~~~v 421 (490)
.. ....+..... ...+++.++|. ++++... ..+.|..+|.. ++.+..+... ...+
T Consensus 217 ~~~~~~~~~~~~~g-P~gi~~d~~G~--------l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~ 286 (322)
T 2fp8_A 217 PKKGTAEVLVKIPN-PGNIKRNADGH--------FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHF 286 (322)
T ss_dssp TTTTCEEEEEECSS-EEEEEECTTSC--------EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCC
T ss_pred CcCCccceEEeCCC-CCCeEECCCCC--------EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccc
Confidence 31 1111111122 56778888774 3444433 14668888874 6766665432 2346
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 422 YSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
+.+++ .+++++++....+.|.++++.
T Consensus 287 ~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 287 EQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp CEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred eEEEE-eCCEEEEeecCCCceEEEecc
Confidence 67776 456666666677888888875
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.78 E-value=5e-07 Score=89.58 Aligned_cols=215 Identities=11% Similarity=0.047 Sum_probs=139.6
Q ss_pred CCCCEEEEEeC-CCeEEEEEccCcceeEeeeeec-cCeEEEEc---cCCceEEEE------------------cCCCeEE
Q 011224 252 KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS-GPTLDVDW---RNNVSFATS------------------STDNMIY 308 (490)
Q Consensus 252 ~~~~~l~s~s~-D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~------------------~~d~~i~ 308 (490)
++|++++.+.. +.+|.+.|+.+.++...+.... ..+..+.+ .+...+..+ -.++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 36777665554 5679999999999888665332 23445443 333333333 2245788
Q ss_pred EEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC--------------------------------------eEE
Q 011224 309 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------------------------------TAK 350 (490)
Q Consensus 309 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg--------------------------------------~i~ 350 (490)
+.|..+.+.+.++.--. ....++++|+|+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 88888877666554211 345688999999988888653 244
Q ss_pred EEecCC--Cce-eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe------------EEEEee
Q 011224 351 IWNMKQ--DKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK------------LLYSLN 415 (490)
Q Consensus 351 iwd~~~--~~~-~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~------------~~~~~~ 415 (490)
+.|..+ ++. +..+.. .....++.++|+|. ++++++..+.+|.++|+.+.+ .+..+.
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk--------~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKK--------HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSS--------EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCC--------EEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 555554 222 222221 22345677778775 577778889999999998652 334443
Q ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCC----------CeEEEEEecCCCEEEE------EECCCCCEEEEE
Q 011224 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE----------GKIVKTYTGNGGIFEV------CWNKEGDKIAAC 477 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~----------~~~~~~~~~~~~v~~~------~~~~~g~~la~~ 477 (490)
- ......++|+|+|...++.-.|++|.+|++.+ ...+..+..+..+-.. +.+|||++|+++
T Consensus 329 v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 329 L-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp C-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred C-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 2 23468899999994445667899999999987 5677777665444223 458999998886
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.75 E-value=4.1e-05 Score=77.68 Aligned_cols=80 Identities=19% Similarity=0.451 Sum_probs=57.6
Q ss_pred CCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEecCCCEE--EEEECCCCC-E
Q 011224 397 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF--EVCWNKEGD-K 473 (490)
Q Consensus 397 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~v~--~~~~~~~g~-~ 473 (490)
+|.|..||+.+++.+++..... ++..-.....+.+++.|+.|+.++.||.++|+++..+.....+. -+.|..+|+ +
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 6889999999999998876432 22211112246678889999999999999999999887655443 366778887 4
Q ss_pred EEEE
Q 011224 474 IAAC 477 (490)
Q Consensus 474 la~~ 477 (490)
+++.
T Consensus 544 v~~~ 547 (582)
T 1flg_A 544 LGVT 547 (582)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=1.6e-05 Score=73.87 Aligned_cols=225 Identities=12% Similarity=0.058 Sum_probs=132.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC-C-eEEEEEccCcceeEe
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K-TAIVWDVKTEEWKQQ 279 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~-~v~iwd~~~~~~~~~ 279 (490)
.....++|+++|+++++-..++.|..|+..+.....+. ....+.++++.++++.+++.... + .|..+|..++++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 34678999999997777778899999998776543332 23467899999999865554332 2 466666666543221
Q ss_pred eeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce
Q 011224 280 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 359 (490)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 359 (490)
... ........++..+.+..+++-..++.|.++|..++..
T Consensus 111 ~~~----------------------------------------~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 111 LTL----------------------------------------PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp EEC----------------------------------------TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EeC----------------------------------------CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence 110 0001122333344444444444567777777654321
Q ss_pred -eee---------eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-CeE--EEEeeCCCCCEEEEEE
Q 011224 360 -VHD---------LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAF 426 (490)
Q Consensus 360 -~~~---------~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~ 426 (490)
+.. ..........+ +|++. .++++-...+.|..|++.. ++. ...+... .....|++
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~--------~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~v 219 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGN--------FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAF 219 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETT--------EEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEE
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCC--------EEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEE
Confidence 110 00011122333 45543 3556666778899999864 321 1111111 23466899
Q ss_pred CCCCCEEEEEeCCCcEEEEEcCCCeEEEE--EecC-CCEEEEEEC---CCCCEEEEEEC
Q 011224 427 SPTGEYLASGSLDKSMHIWSLKEGKIVKT--YTGN-GGIFEVCWN---KEGDKIAACFA 479 (490)
Q Consensus 427 spdg~~l~s~s~dg~i~iw~~~~~~~~~~--~~~~-~~v~~~~~~---~~g~~la~~~~ 479 (490)
+++|+++++....+.|.+++.. |++... +... ..+.+++|. |+++.|..+..
T Consensus 220 d~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 220 DVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp BTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 9999988887778899999975 665332 2322 458999999 89887666543
No 257
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.74 E-value=7e-05 Score=70.21 Aligned_cols=266 Identities=11% Similarity=0.071 Sum_probs=143.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeE-Ee----cCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcce
Q 011224 202 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 276 (490)
Q Consensus 202 ~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~-~~----~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 276 (490)
..+.++.|.+.+..+++ +..|.| +...++.... .. ......+.+|.|.+ + .++.++.++.|..-.=....|
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~S~DgG~tW 111 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLHTTDGGQSW 111 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEEESSTTSSC
T ss_pred CcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEEECCCCCCc
Confidence 46889999888887774 556765 3334432211 11 11244688999986 3 344455667555432111223
Q ss_pred eEeeee--eccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcc-eeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEe
Q 011224 277 KQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353 (490)
Q Consensus 277 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd 353 (490)
...... ..+.+..+.+.++..+...+.++.|+... +.+.. .....++...+..+++.|++.+++.+...+..+-+|
T Consensus 112 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d 190 (327)
T 2xbg_A 112 SQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTK-DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWE 190 (327)
T ss_dssp EECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEES-STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEEC
T ss_pred eECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEc-CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeC
Confidence 322111 11234444443333333333455544321 11211 122234556788999999998887765544444444
Q ss_pred c--CCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee-C---CCCCEEEEEEC
Q 011224 354 M--KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-G---HREPVYSLAFS 427 (490)
Q Consensus 354 ~--~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-~---h~~~v~~l~~s 427 (490)
- .+...+. ......+..+.+.+++. +..++.+|.+++++...++.-..+. + +...+.+|+|.
T Consensus 191 ~gG~tW~~~~--~~~~~~~~~~~~~~~g~----------~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 191 PGQTAWEPHN--RTTSRRLHNMGFTPDGR----------LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp TTCSSCEEEE--CCSSSCEEEEEECTTSC----------EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CCCCceeECC--CCCCCccceeEECCCCC----------EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 2 2223221 23345678888888764 3345567888776433233322222 1 22358999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCeEEEEEec----CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 428 PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG----NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 428 pdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~----~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+++.+++++. +|.| ++....|+.=..... ...++++.|.+++ .+++++.+|.|..++
T Consensus 259 ~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred CCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 9888777655 6766 445554543222221 2457888887554 566667788776554
No 258
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.74 E-value=8.6e-06 Score=73.17 Aligned_cols=193 Identities=10% Similarity=0.065 Sum_probs=131.2
Q ss_pred CeEEEEEcCCCCEEEEEeC--CCeEEEEECCC-ceeEEecC-CCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCccee
Q 011224 203 DVTTLDWNGEGTLLATGSY--DGQARIWSTNG-DLKCTLSK-HKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~--dg~i~iw~~~~-~~~~~~~~-h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~ 277 (490)
....++|++++.++++.+. ++.|++.|... .....+.- ......++++. ++.|+ +.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999998765555553 57999999864 33333321 11122355554 44554 4446789999999999988
Q ss_pred EeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCC-----CCCeeEEEEcCCCCEEEEEeCCCeEEEE
Q 011224 278 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-----QGEVNCVKWDPTGSLLASCSDDVTAKIW 352 (490)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~l~s~~~dg~i~iw 352 (490)
.++......-..+.+.....+++ ..++.|.++|..+.+.+..+.-. -..++.+.|. +|.+++....++.|.+.
T Consensus 100 ~~i~~g~~~g~glt~Dg~~l~vs-~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 100 KNFTHQMKDGWGLATDGKILYGS-DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEEECCSSSCCEEEECSSSEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEECCCCCeEEEEECCCEEEEE-CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 88764412223455555555554 46889999999887766655421 1236778888 77767666678899999
Q ss_pred ecCCCceeeeecccc-------------ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 353 NMKQDKYVHDLREHS-------------KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 353 d~~~~~~~~~~~~~~-------------~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
|..+++.+..+.... .....|+|+|++. .+++++...+.|...++..
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~--------~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK--------RIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT--------EEEEEETTCSEEEEEEEEE
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC--------EEEEECCCCCeEEEEEEec
Confidence 999999887765321 3568999999875 4778888888888877643
No 259
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.74 E-value=5.3e-06 Score=73.66 Aligned_cols=177 Identities=9% Similarity=-0.001 Sum_probs=123.6
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 367 (490)
..+.+.++..+++.+.++.|+++|+.+++.+..+......-..+++.. +++.++.-.++.+.+||..+.+.+.++....
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~ 136 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG 136 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence 456677777888999999999999999988777621111123455543 3555556678999999999999888876432
Q ss_pred ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-----CCEEEEEECCCCCEEEEEeCCCcE
Q 011224 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSLDKSM 442 (490)
Q Consensus 368 ~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~spdg~~l~s~s~dg~i 442 (490)
.-..++ +++. .|+.+..++.|.++|..+.+.+.++.-.. ..++.|.|. +|...|..-.+..|
T Consensus 137 -eGwGLt--~Dg~---------~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 137 -EGWGLC--YWNG---------KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp -CCCCEE--EETT---------EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred -ceeEEe--cCCC---------EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence 223343 3332 23344468899999999998887765321 245778887 77666665568899
Q ss_pred EEEEcCCCeEEEEEecC--------------CCEEEEEECCCCCEEEEEE
Q 011224 443 HIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 443 ~iw~~~~~~~~~~~~~~--------------~~v~~~~~~~~g~~la~~~ 478 (490)
.+-|..+|+++..+... ...+.+||+|+++.|...+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998887431 2478999999877555443
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.72 E-value=2.6e-06 Score=75.67 Aligned_cols=179 Identities=11% Similarity=0.024 Sum_probs=127.6
Q ss_pred CEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCe-EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec
Q 011224 244 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 322 (490)
Q Consensus 244 ~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 322 (490)
-..+|.|+. +..+++.+.+|.|+++|+.+++....+ ...... ..+....+..+++.-.++.++++|..+.+.+.++.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 357888873 556677888899999999999988877 433221 33666677778888889999999999998888876
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc-----ccEEEEEEcCCCCCCCCCCCcEEEEEEECC
Q 011224 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASASFD 397 (490)
Q Consensus 323 ~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d 397 (490)
.- ..-..++ ++++.|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +|. +.+....+
T Consensus 134 ~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~---------lyanvw~s 200 (268)
T 3nok_A 134 YS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV---------IYANIWHS 200 (268)
T ss_dssp CS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEETTC
T ss_pred CC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE---------EEEEECCC
Confidence 42 2223444 567777766678999999999988877665322 133456665 442 44555568
Q ss_pred CcEEEEeCCCCeEEEEeeCC-------------CCCEEEEEECCCCCEEEEEe
Q 011224 398 STVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 398 g~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~spdg~~l~s~s 437 (490)
+.|.+.|..+++.+..+.-. ....+.|||+|+++.|...+
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 89999999999998876531 13568999999865554443
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.72 E-value=7.2e-06 Score=72.18 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=125.3
Q ss_pred CCEEEEEecCCCCEEEEEeCCC--eEEEEEccCcceeEeeeeeccCe-EEEEccCCceEEEEcCCCeEEEEEcCCCccee
Q 011224 243 GPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIK 319 (490)
Q Consensus 243 ~~V~~l~~~~~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~ 319 (490)
.-..+|.|++ +..+.+.+.+| +|+.+|+.+++............ ..+...++..+...-.++.++++|..+.+.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 3466899987 44555666554 89999999999888776544332 33455567777888889999999999998888
Q ss_pred EecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccc-----ccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-----KEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 320 ~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
++.... .-..++ ++++.|+.+..++.|.++|..+.+.+..+.... ..+..+.|. +|. +.+..
T Consensus 100 ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~---------lyanv 166 (243)
T 3mbr_X 100 RFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE---------LLANV 166 (243)
T ss_dssp EEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE---------EEEEE
T ss_pred EEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE---------EEEEE
Confidence 876432 223444 456655555568899999999988877665322 233445554 332 44555
Q ss_pred ECCCcEEEEeCCCCeEEEEeeCC-------------CCCEEEEEECCCCCEEEEEe
Q 011224 395 SFDSTVKLWDVELGKLLYSLNGH-------------REPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 395 s~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~l~~spdg~~l~s~s 437 (490)
..+..|.+.|..+++.+..+.-. ....+.|||+|+++.|...+
T Consensus 167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 46789999999999998876521 13568999999876665544
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.71 E-value=4.2e-06 Score=74.30 Aligned_cols=178 Identities=12% Similarity=0.145 Sum_probs=120.8
Q ss_pred EEEEccCCceEEEEcCCC--eEEEEEcCCCcceeEecCCCCC-eeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 288 LDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
..+.|.++..+.+++.++ .|+++|+.+++.+..+.-.... -..+++. .+++.++.-.++.+.+||..+.+.+.++.
T Consensus 46 qGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~ 124 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFN 124 (262)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred ceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEE
Confidence 455566666677777665 8999999999887776543322 1234443 22444445568899999999999888876
Q ss_pred cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCC--C---CCEEEEEECCCCCEEEEEeCC
Q 011224 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH--R---EPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 365 ~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h--~---~~v~~l~~spdg~~l~s~s~d 439 (490)
... .-..++ +++. .+++| ..++.|.++|..+.+.+.++.-. . ..++.+.|. +|...|..-.+
T Consensus 125 ~~~-eG~glt--~dg~--------~L~~S-dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 125 YDG-EGWGLT--HNDQ--------YLIMS-DGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp CSS-CCCCEE--ECSS--------CEEEC-CSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred CCC-CceEEe--cCCC--------EEEEE-CCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence 432 222333 3432 23333 44678999999999888776532 1 335668886 77766666568
Q ss_pred CcEEEEEcCCCeEEEEEecC-------------CCEEEEEECCCCCEEEEEEC
Q 011224 440 KSMHIWSLKEGKIVKTYTGN-------------GGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~~~-------------~~v~~~~~~~~g~~la~~~~ 479 (490)
..|.+.|..+|+++..+... ...+.+||+|+++.|...+.
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 89999999999999888542 24689999999887666543
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.69 E-value=1.1e-06 Score=91.10 Aligned_cols=269 Identities=15% Similarity=0.123 Sum_probs=145.9
Q ss_pred EEEECC-CCCEEEEEECCC-----------cEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 147 ACAWSP-AGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 147 ~~~~sp-~~~~l~sgs~D~-----------~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
++++.| ++++++.||.+. .+.+||+.+++... +. ... . .+.....++++..+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------~~--~~~---~---~~~~~~~~~~~~~~g~ 255 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------RT--VTV---T---KHDMFCPGISMDGNGQ 255 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------CE--EEE---C---SCCCSSCEEEECTTSC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------Cc--ccC---C---CCCCccccccCCCCCC
Confidence 566777 888888888653 57889887654321 00 010 0 1112233567788999
Q ss_pred EEEEEeC-CCeEEEEECCCceeEEecC-CC-CCEEEEEecCCCCEEEEEe-CC-----CeEEEEEccCcceeEeeeeecc
Q 011224 215 LLATGSY-DGQARIWSTNGDLKCTLSK-HK-GPIFSLKWNKKGDYLLTGS-CD-----KTAIVWDVKTEEWKQQFEFHSG 285 (490)
Q Consensus 215 ~l~sg~~-dg~i~iw~~~~~~~~~~~~-h~-~~V~~l~~~~~~~~l~s~s-~D-----~~v~iwd~~~~~~~~~~~~~~~ 285 (490)
+++.|+. +..+.+||.....-..+.. +. ..-.++...++++.++.|+ .+ ..+.+||+.+..|...-.....
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~ 335 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence 9999985 4589999976543222211 11 1113445567888888888 34 5799999998887653100000
Q ss_pred CeE-----EEEccCCceEEEEcCC---------CeEEEEEcCCCcceeEecCCC---------CCeeEEEEc-CCCCEEE
Q 011224 286 PTL-----DVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWD-PTGSLLA 341 (490)
Q Consensus 286 ~~~-----~~~~~~~~~~~~~~~d---------~~i~~~~~~~~~~~~~~~~h~---------~~v~~v~~~-~~~~~l~ 341 (490)
+.. .+...++..++.++.+ ..+..|+.....-......+. ..-.++.+. .++++++
T Consensus 336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 000 0111233334444333 345667766554222221111 122344443 3678888
Q ss_pred EEeCCC-----------eEEEEecCCCceeeee--cccccc-EEEEEEcCCCCCCCCCCCcEEEEEEECC----------
Q 011224 342 SCSDDV-----------TAKIWNMKQDKYVHDL--REHSKE-IYTIRWSPTGSGTNNPNQQLILASASFD---------- 397 (490)
Q Consensus 342 s~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~-i~~v~~~p~g~~~~~~~~~~~l~sgs~d---------- 397 (490)
.|+.++ .|.+||..+....... ...... -.+....|++. +++.|+.+
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---------i~v~GG~~~~~~~~~~~~ 486 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---------TFITGGQRRGIPFEDSTP 486 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---------EEEECCBSBCCTTCCCSB
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---------EEEECCcccCcCcCCCCc
Confidence 888543 6778887766543322 111111 12334446654 56666643
Q ss_pred -CcEEEEeCCCCeEEE--EeeCCCCCEEEEEECCCCCEEEEEeC
Q 011224 398 -STVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 398 -g~i~iwd~~~~~~~~--~~~~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
..+.+||..+.+-.. .+...+.......+.|+|++++.||.
T Consensus 487 ~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999987654221 11111222234566799999999985
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.66 E-value=1.6e-05 Score=80.76 Aligned_cols=266 Identities=12% Similarity=0.074 Sum_probs=155.1
Q ss_pred EEEEEeCCCeEEEEECC-CceeEEecCCCCC---------EEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeec
Q 011224 215 LLATGSYDGQARIWSTN-GDLKCTLSKHKGP---------IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~-~~~~~~~~~h~~~---------V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 284 (490)
.++.++.++.|..+|.. ++.+..+...... ..++.+ .+..++.++.|+.|..+|..+++.+-.+....
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~ 147 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFAD 147 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence 44445553447777764 4444444322110 011122 34678888899999999999998765554321
Q ss_pred ---------cCeEEEEccCCc-eEEEEc------CCCeEEEEEcCCCcceeEecCCCC----------------------
Q 011224 285 ---------GPTLDVDWRNNV-SFATSS------TDNMIYVCKIGENRPIKTFAGHQG---------------------- 326 (490)
Q Consensus 285 ---------~~~~~~~~~~~~-~~~~~~------~d~~i~~~~~~~~~~~~~~~~h~~---------------------- 326 (490)
.++..-.-.+.. .++.++ .++.|+.+|..+++.+-.+.....
T Consensus 148 ~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~ 227 (582)
T 1flg_A 148 HGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWP 227 (582)
T ss_dssp GGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSC
T ss_pred CCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCC
Confidence 122110000111 333333 367888888877765543321100
Q ss_pred -------------------CeeEEEEcCCCCEEEEEeC--------------------C----CeEEEEecCCCceeeee
Q 011224 327 -------------------EVNCVKWDPTGSLLASCSD--------------------D----VTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 327 -------------------~v~~v~~~~~~~~l~s~~~--------------------d----g~i~iwd~~~~~~~~~~ 363 (490)
.-..+++.|...+|+.+.. | +.|..+|..+++.+-.+
T Consensus 228 ~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~ 307 (582)
T 1flg_A 228 DDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFY 307 (582)
T ss_dssp BCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEE
T ss_pred CccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEE
Confidence 0123566777777776653 2 58999999999887665
Q ss_pred cc--cc--------ccEEEEEEc-CCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-------------C
Q 011224 364 RE--HS--------KEIYTIRWS-PTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-------------E 419 (490)
Q Consensus 364 ~~--~~--------~~i~~v~~~-p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-------------~ 419 (490)
+. |. .++.. ... .+|. ...+++.++.+|.++++|..+|+.+..+.... .
T Consensus 308 q~~~~d~wd~~~~~~p~l~-~~~~~~G~------~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 308 QHTPNDAWDFSGNNELVLF-DYKAKDGK------IVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp ESSTTCCSCCCCCCCCEEE-EEECSSSC------EEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred eCCCCCcccccCCCCcEEE-eeecCCCC------EEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 43 21 11111 111 2221 01267789999999999999999988765331 0
Q ss_pred CE--------------------------------EEEEECCCCCEEEEEe------------------------------
Q 011224 420 PV--------------------------------YSLAFSPTGEYLASGS------------------------------ 437 (490)
Q Consensus 420 ~v--------------------------------~~l~~spdg~~l~s~s------------------------------ 437 (490)
++ ..++|+|+..++++..
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 00 1346677655554432
Q ss_pred ---CCCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 438 ---LDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 438 ---~dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+|.|..||+.+|+.+........+..-.....|.+++.++.|+.++.||.+
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~ 515 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAK 515 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECC
Confidence 3688999999999998776543332222223356788889999999999864
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.65 E-value=0.00011 Score=69.48 Aligned_cols=243 Identities=9% Similarity=0.001 Sum_probs=148.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeee
Q 011224 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF 282 (490)
Q Consensus 204 V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~ 282 (490)
.+|.+..+++ +|+.+. ...|+..++.+.....+......+.+++|++.+..|+ +-...+.|..+++........+..
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 3455545533 343333 3457777777654444433344578999998766655 445678899999887654333222
Q ss_pred e--ccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEE-EEEeCC-CeEEEEecCCCc
Q 011224 283 H--SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDD-VTAKIWNMKQDK 358 (490)
Q Consensus 283 ~--~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d-g~i~iwd~~~~~ 358 (490)
. ...-+.++|.....+++-...+.|.+.+.........+.........++++|.+..| ++-... +.|..+++....
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~ 193 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 193 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence 1 122355666677777887888899999887654433343444567899999965554 444444 778888876543
Q ss_pred eeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeC
Q 011224 359 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 359 ~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~ 438 (490)
....+.........++++|.+. .+..+-+..+.|..+++........+.........|++ ..+.++++-..
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~--------~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~ 264 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWH 264 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETT
T ss_pred cEEEEECCCCCcceEEEeCCCC--------EEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCC
Confidence 2222222234567899987654 24445556778999998743322223333345677888 34555566666
Q ss_pred CCcEEEEEcCCCeEEEEEe
Q 011224 439 DKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 439 dg~i~iw~~~~~~~~~~~~ 457 (490)
.+.|..++..+|+.+..+.
T Consensus 265 ~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 265 TKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTTCCSCEEEE
T ss_pred CCeEEEEEccCCCccEEec
Confidence 7889999876776555543
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=3e-05 Score=68.20 Aligned_cols=179 Identities=11% Similarity=0.071 Sum_probs=123.3
Q ss_pred eEEEEccCCceEEEEcCC--CeEEEEEcCCCcceeEecCCCCC-eeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 287 TLDVDWRNNVSFATSSTD--NMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~d--~~i~~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
+..+.|.++..+.+++.+ ..|+.+|+.+++.+....-.... -..+++. .+++.+..-.++.+.+||..+.+.+.++
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 446667777677777765 48999999999888776533222 1334443 2445555667899999999999998887
Q ss_pred ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCC-----CCEEEEEECCCCCEEEEEeC
Q 011224 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR-----EPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 364 ~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~-----~~v~~l~~spdg~~l~s~s~ 438 (490)
.... .-..++ +++. .+++| ..++.|.++|..+.+.+.++.-.. ..++.+.|. +|...|..-.
T Consensus 102 ~~~~-~Gwglt--~dg~--------~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 102 RYPG-EGWALT--SDDS--------HLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp ECSS-CCCEEE--ECSS--------CEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred eCCC-CceEEe--eCCC--------EEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 6533 224444 3332 13344 458899999999998887765321 245677776 6766665556
Q ss_pred CCcEEEEEcCCCeEEEEEecC--------------CCEEEEEECCCCCEEEEEEC
Q 011224 439 DKSMHIWSLKEGKIVKTYTGN--------------GGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 439 dg~i~iw~~~~~~~~~~~~~~--------------~~v~~~~~~~~g~~la~~~~ 479 (490)
+..|.+.|..+|+++..+... ...+.+||+|+++.|...+.
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 789999999999999887521 24689999999886665543
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.58 E-value=9.9e-05 Score=70.90 Aligned_cols=242 Identities=9% Similarity=-0.001 Sum_probs=148.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeeee
Q 011224 205 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFH 283 (490)
Q Consensus 205 ~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~ 283 (490)
.|.+..+. .+|+.+. ...|+..++.+.....+......+.+++|++.+..|+ +-...+.|..+++........+...
T Consensus 80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCcccc-ceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 34444443 3444333 3567778877654444433445578999998666555 5556788999998876543332211
Q ss_pred c--cCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEE-eCC-CeEEEEecCCCce
Q 011224 284 S--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDD-VTAKIWNMKQDKY 359 (490)
Q Consensus 284 ~--~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d-g~i~iwd~~~~~~ 359 (490)
. ..-+.++|.....+++-...+.|.+.++........+.........++++|.+..|... ... +.|..+++.....
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 1 12355666677777777778888888876554333343344567899999876655444 344 6788888765433
Q ss_pred eeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCC
Q 011224 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439 (490)
Q Consensus 360 ~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 439 (490)
.............++++|.+. .+..+-+..+.|..+|+........+.........|++ ..+.++++-...
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 308 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGR--------RMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 308 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGT--------EEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred EEEEECCCCCeeeEEEeCCCC--------EEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCC
Confidence 222222234467899987654 24445556778999998643332223333345678888 345555666677
Q ss_pred CcEEEEEcCCCeEEEEEe
Q 011224 440 KSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~ 457 (490)
+.|..++..+|+.+..+.
T Consensus 309 ~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCcceEEEc
Confidence 889999977777665554
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=9.1e-05 Score=72.21 Aligned_cols=237 Identities=10% Similarity=0.149 Sum_probs=143.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC-C----eEEEEEccCcce
Q 011224 203 DVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K----TAIVWDVKTEEW 276 (490)
Q Consensus 203 ~V~~~~~s~-~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D-~----~v~iwd~~~~~~ 276 (490)
....++|+| ++..|+.+...+.|+.++..+.....+.........|+|++++++|+.+... + .+.+.+ ..+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCce
Confidence 457889998 4555666655588899998876555554455567899999999966665542 2 122222 11111
Q ss_pred eEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecC
Q 011224 277 KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~ 355 (490)
.. ...+. ......+++++| ++.++++-..++.|..++..
T Consensus 217 ~~---------------------------------------~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 217 KV---------------------------------------ITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp CS---------------------------------------EEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred ee---------------------------------------eeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 00 00000 012345688899 77777777778899999987
Q ss_pred CCceeeeecc-ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCC--CeE--EEEeeCC-------------
Q 011224 356 QDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL--GKL--LYSLNGH------------- 417 (490)
Q Consensus 356 ~~~~~~~~~~-~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~--~~~--~~~~~~h------------- 417 (490)
++........ .......++|+|++. .++++-...+.|..++... +.. +..+.+.
T Consensus 257 ~~~~~~~~~~~~~~~P~gia~~pdG~--------~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~ 328 (430)
T 3tc9_A 257 TQETTPLFTIQDSGWEFHIQFHPSGN--------YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKK 328 (430)
T ss_dssp TTEEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGG
T ss_pred CCcEEEEEEcCCCCcceeEEEcCCCC--------EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcc
Confidence 6654221111 123457899999885 2445555678888887652 222 1122111
Q ss_pred --CCCEE-EEEEC--------CCCCEEEEEeCCCcEEEEEcCCCeEEEEEec---------CC---------CEEEEEEC
Q 011224 418 --REPVY-SLAFS--------PTGEYLASGSLDKSMHIWSLKEGKIVKTYTG---------NG---------GIFEVCWN 468 (490)
Q Consensus 418 --~~~v~-~l~~s--------pdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~---------~~---------~v~~~~~~ 468 (490)
-..-. .++.. ++|.++++=...+.|+.++ .+|.+...... .+ ....++++
T Consensus 329 a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd 407 (430)
T 3tc9_A 329 ARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYD 407 (430)
T ss_dssp CBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEE
T ss_pred eEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEE
Confidence 01123 45553 4466667766678899998 45765443321 11 47899999
Q ss_pred C-CCCEEEEEECCCcEEEEEee
Q 011224 469 K-EGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 469 ~-~g~~la~~~~d~~v~v~~~~ 489 (490)
| +|.++++-..++.|+.+++.
T Consensus 408 ~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 408 EERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEEECCCCeEEEEccC
Confidence 9 57777777888999988764
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.48 E-value=3.1e-05 Score=81.34 Aligned_cols=196 Identities=13% Similarity=0.089 Sum_probs=113.2
Q ss_pred ccccc-ceeEEEEC-CCCCEEEEEE-CC----CcEEEEecCCC-CCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEc
Q 011224 139 EGHTS-EVCACAWS-PAGSLLASGS-GD----STARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 210 (490)
Q Consensus 139 ~~H~~-~V~~~~~s-p~~~~l~sgs-~D----~~i~~Wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s 210 (490)
.+|.. .+.+.+|| |||++||-+. .+ ..|+++|+.++ .... .. +. .....++|+
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~----~~-----~~----------~~~~~~~Ws 229 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA----DK-----VS----------GTNGEIVWG 229 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC----CC-----EE----------EECSCCEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC----cc-----cc----------CceeeEEEe
Confidence 34554 68889999 9999777433 23 35999999876 4210 00 00 012457899
Q ss_pred CCCCEEEEEeCC-----CeEEEEECCCce---eEEec-CCCCCEEEEEecCCCCEEEEEeC---CCeEEEEEccCc--ce
Q 011224 211 GEGTLLATGSYD-----GQARIWSTNGDL---KCTLS-KHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTE--EW 276 (490)
Q Consensus 211 ~~~~~l~sg~~d-----g~i~iw~~~~~~---~~~~~-~h~~~V~~l~~~~~~~~l~s~s~---D~~v~iwd~~~~--~~ 276 (490)
|||+.|+....+ ..|+++++.+.. ...+. .......++.|+|+|++|+..+. ...|.++|+.++ ..
T Consensus 230 pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 230 PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc
Confidence 999888877765 257777776532 22222 22344678899999998876553 345788888765 23
Q ss_pred --eEeeeeeccCeEEEEccCCceE-EEEcCC----CeEEEEEcCCCcceeE-ecCCCC--CeeEEEEcCCCCEEEEEeCC
Q 011224 277 --KQQFEFHSGPTLDVDWRNNVSF-ATSSTD----NMIYVCKIGENRPIKT-FAGHQG--EVNCVKWDPTGSLLASCSDD 346 (490)
Q Consensus 277 --~~~~~~~~~~~~~~~~~~~~~~-~~~~~d----~~i~~~~~~~~~~~~~-~~~h~~--~v~~v~~~~~~~~l~s~~~d 346 (490)
.........+...++|.....| +.+..+ ..|+.+++........ +..+.. .+..+.+. .+.++++...+
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~ 388 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRA 388 (751)
T ss_dssp CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEET
T ss_pred eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeC
Confidence 3222333445566664444443 343332 3677777754222222 333433 34556655 34556777778
Q ss_pred CeEEE--Eec
Q 011224 347 VTAKI--WNM 354 (490)
Q Consensus 347 g~i~i--wd~ 354 (490)
+..+| +++
T Consensus 389 g~~~l~~~dl 398 (751)
T 2xe4_A 389 GLTRIWTMMA 398 (751)
T ss_dssp TEEEEEEEEC
T ss_pred CEEEEEEEec
Confidence 86554 554
No 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.46 E-value=0.00096 Score=62.01 Aligned_cols=225 Identities=12% Similarity=0.076 Sum_probs=134.7
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccC----cceeEeeeee--ccCeEEEEccCC
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKT----EEWKQQFEFH--SGPTLDVDWRNN 295 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~----~~~~~~~~~~--~~~~~~~~~~~~ 295 (490)
..|+..++.+.....+......+.+++|++.+..|+ +-...+.|..+++.+ ......+... ...-+.++|...
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 457777876643333333445678999998766554 555678999999876 2222222111 122345566666
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-C-CeEEEEecCCCceeeee-ccccccEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-VTAKIWNMKQDKYVHDL-REHSKEIYT 372 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~-~~~~~~i~~ 372 (490)
..+++-...+.|.+++.........+.........++++|.+..|+.+.. . +.|...++.... ...+ ...-.....
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNG 168 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEE
T ss_pred eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceE
Confidence 77777778889999888654433333333456789999996665544443 3 678888875432 2222 222345678
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeE--EEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
++++|++. .+..+-+..+.|..+|+..... +............|++. .+.++++-...+.|..++..+|
T Consensus 169 la~d~~~~--------~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 169 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEEeccCC--------EEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence 89988654 2444555677899999874322 22211122345778875 3556666667789999998777
Q ss_pred eEEEEEe
Q 011224 451 KIVKTYT 457 (490)
Q Consensus 451 ~~~~~~~ 457 (490)
+.+..+.
T Consensus 240 ~~~~~i~ 246 (316)
T 1ijq_A 240 SDVNLLA 246 (316)
T ss_dssp CCCEEEE
T ss_pred cceEEEe
Confidence 7555543
No 271
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=3e-05 Score=80.24 Aligned_cols=263 Identities=10% Similarity=0.031 Sum_probs=144.9
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEECCCcee---EEe-cCCCCCEEEEEecCCCCEEEEEeC-CCeEEE
Q 011224 206 TLDWNG-EGTLLATGSYDG-----------QARIWSTNGDLK---CTL-SKHKGPIFSLKWNKKGDYLLTGSC-DKTAIV 268 (490)
Q Consensus 206 ~~~~s~-~~~~l~sg~~dg-----------~i~iw~~~~~~~---~~~-~~h~~~V~~l~~~~~~~~l~s~s~-D~~v~i 268 (490)
.+++.+ ++++++.|+.+. .+.+||...... ..+ ..+.....++++..++..++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 888999888653 578888764321 122 122233345677788998888884 568999
Q ss_pred EEccCcceeEeeeeeccC--eEEEEccCCceEEEEc-CC-----CeEEEEEcCCCcceeE-------ecCCCCCeeEEEE
Q 011224 269 WDVKTEEWKQQFEFHSGP--TLDVDWRNNVSFATSS-TD-----NMIYVCKIGENRPIKT-------FAGHQGEVNCVKW 333 (490)
Q Consensus 269 wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~d-----~~i~~~~~~~~~~~~~-------~~~h~~~v~~v~~ 333 (490)
||+.+..|...-...... .......++..++.++ .+ ..+.+||..++.-... +..... ...+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~~~ 346 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QGLY 346 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TGGG
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---ccee
Confidence 999998876543222211 1122233566677766 33 4678888766532211 000000 0112
Q ss_pred cCCCCEEEEEeCCC---------eEEEEecCCCceeeeecccc---------ccEEEEEEcCCCCCCCCCCCcEEEEEEE
Q 011224 334 DPTGSLLASCSDDV---------TAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPTGSGTNNPNQQLILASAS 395 (490)
Q Consensus 334 ~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~---------~~i~~v~~~p~g~~~~~~~~~~~l~sgs 395 (490)
..++.+++.|+.+| .+..||..+........... ....++.|...+ ..+++.|+
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~--------~~i~v~GG 418 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVK--------GKILTFGG 418 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTT--------TEEEEECC
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCC--------CeEEEEeC
Confidence 24555555665544 46778877665432221111 112333332211 13566666
Q ss_pred CCC-----------cEEEEeCCCCeEEEEe--eCCCC-CEEEEEECCCCCEEEEEeCC-----------CcEEEEEcCCC
Q 011224 396 FDS-----------TVKLWDVELGKLLYSL--NGHRE-PVYSLAFSPTGEYLASGSLD-----------KSMHIWSLKEG 450 (490)
Q Consensus 396 ~dg-----------~i~iwd~~~~~~~~~~--~~h~~-~v~~l~~spdg~~l~s~s~d-----------g~i~iw~~~~~ 450 (490)
.++ .|.+||..+..-.... .-... .-.+++..|+|++++.||.+ ..+.+||..+.
T Consensus 419 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 419 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 432 6778887765533222 11111 12345667899999999864 56899999876
Q ss_pred eEEEE--Eec-CCCEEEEEECCCCCEEEEEEC
Q 011224 451 KIVKT--YTG-NGGIFEVCWNKEGDKIAACFA 479 (490)
Q Consensus 451 ~~~~~--~~~-~~~v~~~~~~~~g~~la~~~~ 479 (490)
+-... ... ........+.|+|+.+++|+.
T Consensus 499 ~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 499 TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 53221 111 111234456799999999875
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.42 E-value=0.0003 Score=65.13 Aligned_cols=217 Identities=12% Similarity=0.073 Sum_probs=128.1
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
.....++|+|+|+++++-...+.|..|+..... ...... ...+..+++.++|+++++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~------------~~~~~~-------~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------QIHATV-------EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------EEEEEC-------SSEEEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce------------EEEEeC-------CCCceeEEEcCCCcEEEEeccC
Confidence 356789999999987777788899999864321 011111 2357889999999976665443
Q ss_pred C--eEEEEECCCceeEEecC--CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEe-ee---------eeccCeE
Q 011224 223 G--QARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FE---------FHSGPTL 288 (490)
Q Consensus 223 g--~i~iw~~~~~~~~~~~~--h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-~~---------~~~~~~~ 288 (490)
. .|..++........+.. .......++..+.+..+++-...+.|.++|..++..... .. .......
T Consensus 93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 2 35556644332222211 122334555555554455555688999999765421110 00 0011223
Q ss_pred EEEccCCceEEEEcCCCeEEEEEcCC-Ccc--eeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee--eee
Q 011224 289 DVDWRNNVSFATSSTDNMIYVCKIGE-NRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDL 363 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~ 363 (490)
.+.......+++....+.|+.+++.. +.. ...+.. ......++++++|+++++....+.|.+++.. ++.. ..+
T Consensus 173 gis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 173 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp EEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred CcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 34334445667777888899998764 211 122211 1345678999999988888778899999975 5442 233
Q ss_pred ccccccEEEEEEc---CCCC
Q 011224 364 REHSKEIYTIRWS---PTGS 380 (490)
Q Consensus 364 ~~~~~~i~~v~~~---p~g~ 380 (490)
........+++|. |++.
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTT
T ss_pred ccccCCceEEEEecccCCCC
Confidence 3333567889987 6653
No 273
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.40 E-value=0.0014 Score=63.22 Aligned_cols=242 Identities=12% Similarity=0.048 Sum_probs=145.2
Q ss_pred EEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEE-EeCCCeEEEEEccCcc----eeEeeeeeccC--e
Q 011224 215 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEE----WKQQFEFHSGP--T 287 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~----~~~~~~~~~~~--~ 287 (490)
+|+.+. ...|+..++.+.....+......+.+|+|++.+..|+- -...+.|+.+++.... ....+...... -
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 444443 36788888776544444445567889999987666554 4557889999886521 22222211112 2
Q ss_pred EEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-C-CCeEEEEecCCCceeeeecc
Q 011224 288 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-D-DVTAKIWNMKQDKYVHDLRE 365 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~-dg~i~iwd~~~~~~~~~~~~ 365 (490)
+.++|.....+++-...+.|.+.++........+.........|+++|.+.+|+... . .+.|...++........+..
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~ 243 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence 456676777777878888899888876554444443445578999999766555444 2 36788888765433222222
Q ss_pred ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee--CCCCCEEEEEECCCCCEEEEEeCCCcEE
Q 011224 366 HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMH 443 (490)
Q Consensus 366 ~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~s~dg~i~ 443 (490)
.-.....|+++|.+. .+..+-+..+.|..+|+........+. +.......|++. .+.++.+-...+.|.
T Consensus 244 ~l~~P~glavd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 244 NIQWPNGITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 314 (400)
T ss_dssp SCSCEEEEEEETTTT--------EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred CCCceEEEEEEeCCC--------EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence 334567899987654 233444556789999986433222222 222345677773 334555666778899
Q ss_pred EEEcCCCeEEEEEecC-CCEEEEE
Q 011224 444 IWSLKEGKIVKTYTGN-GGIFEVC 466 (490)
Q Consensus 444 iw~~~~~~~~~~~~~~-~~v~~~~ 466 (490)
.++..+|+.+..+... ....++.
T Consensus 315 ~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 315 SANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEESSSCCCCEEEECSCSCEEEEE
T ss_pred EEEcCCCCceEEEecCCCCCceEE
Confidence 9998788765555432 2344443
No 274
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.38 E-value=0.0011 Score=67.67 Aligned_cols=327 Identities=9% Similarity=0.018 Sum_probs=174.1
Q ss_pred ccceeEEEECCCCCEEE-EEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC-EEEEE
Q 011224 142 TSEVCACAWSPAGSLLA-SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATG 219 (490)
Q Consensus 142 ~~~V~~~~~sp~~~~l~-sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~-~l~sg 219 (490)
-..+.+++|++.+..|+ +=...+.|..+++...... ..+ +. ........+++.+.+. +.++-
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------~~v--~~----~~~~~P~GlAvD~~~~~ly~~d 102 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------QNV--VV----SGLLSPDGLACDWLGEKLYWTD 102 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------EEE--EC----SSCSCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------EEE--Ee----CCCCCcCeEEEEecCCEEEEEe
Confidence 34578999999766555 4445677888886532100 000 00 1123577889988555 44455
Q ss_pred eCCCeEEEEECCCceeEEec-CCCCCEEEEEecCCCCEEEEEeC--CCeEEEEEccCcceeEeeeeeccCeE--EEEccC
Q 011224 220 SYDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTL--DVDWRN 294 (490)
Q Consensus 220 ~~dg~i~iw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~~ 294 (490)
...+.|.+.+.++.....+. ..-....+|++.|.+.+|+.... .+.|...++................. .++...
T Consensus 103 ~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~ 182 (619)
T 3s94_A 103 SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE 182 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccC
Confidence 56789999999886554443 33344578999997666655543 35666667654433222211122233 334445
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc-----
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE----- 369 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----- 369 (490)
...+++-...+.|..+++..........+......++++..+ .++++-...+.|...|..+++....+......
T Consensus 183 ~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~ 261 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIH 261 (619)
T ss_dssp TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEE
T ss_pred CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEE
Confidence 566666667778888877654333222222223356777655 55555556778888887666433222110000
Q ss_pred --------------------E--EEE---------EEcCCCC-------CCCCCCCcEEEEEEECCCcEEEEeCCCCeE-
Q 011224 370 --------------------I--YTI---------RWSPTGS-------GTNNPNQQLILASASFDSTVKLWDVELGKL- 410 (490)
Q Consensus 370 --------------------i--~~v---------~~~p~g~-------~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~- 410 (490)
+ .|+ +..|.|. .+....+. +|+.+. .+.|+..++.....
T Consensus 262 v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~-~Ll~~~-~~~i~~i~l~~~~~~ 339 (619)
T 3s94_A 262 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE-LLLLAR-RTDLRRISLDTPDFT 339 (619)
T ss_dssp ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE-EEEEEE-SSCEEEEESSSTTCC
T ss_pred EEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce-EEEEEc-ccceEEEecCCCccc
Confidence 0 111 1122221 11111122 333333 45677777765431
Q ss_pred --EEEeeCCCCCEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCC-EEEEEECCCcEEE
Q 011224 411 --LYSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGD-KIAACFANHTVCV 485 (490)
Q Consensus 411 --~~~~~~h~~~v~~l~~spdg~~l~-s~s~dg~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~-~la~~~~d~~v~v 485 (490)
...+.+ ...+.+|+|.+.+..|. +-...+.|+.+++........... -..+.++++.+.+. +..+-+..+.|.+
T Consensus 340 ~~~~~~~~-l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 340 DIVLQLED-IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp CEECCCSC-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred eeEEeccc-cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEE
Confidence 111222 23578899998655554 444578899999875443333332 24567888887544 5555566778887
Q ss_pred EEe
Q 011224 486 LDF 488 (490)
Q Consensus 486 ~~~ 488 (490)
.++
T Consensus 419 ~~~ 421 (619)
T 3s94_A 419 TRL 421 (619)
T ss_dssp EET
T ss_pred EeC
Confidence 764
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.36 E-value=0.00015 Score=70.74 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=138.6
Q ss_pred CEEEEEecCC--CCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc-eEEEEcCC---C-eEEEEEcCCCc
Q 011224 244 PIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD---N-MIYVCKIGENR 316 (490)
Q Consensus 244 ~V~~l~~~~~--~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d---~-~i~~~~~~~~~ 316 (490)
...+|+|+|+ +..|+.+...+.|+.+|+.++....... .......+.+..+. .+++.... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3468999984 4456655554899999997776544332 22334455554322 33333211 1 12222221111
Q ss_pred c-eeEecCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeeecc--ccccEEEEEEcCCCCCCCCCCCcEEEE
Q 011224 317 P-IKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 317 ~-~~~~~~h~~~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
. ...+. .......++++| +|.++++-..++.|+.++..++.....+.. .......++|+|++. .+.+
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~--------~LYv 289 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD--------WAYI 289 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS--------EEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC--------EEEE
Confidence 0 01111 123456788999 777777777788999999886655222211 112234689999875 2445
Q ss_pred EEECCCcEEEEeCC--CCeE--EEEeeCC---------------CCCEEEEEE---------CCCCCEEEEEeCCCcEEE
Q 011224 393 SASFDSTVKLWDVE--LGKL--LYSLNGH---------------REPVYSLAF---------SPTGEYLASGSLDKSMHI 444 (490)
Q Consensus 393 sgs~dg~i~iwd~~--~~~~--~~~~~~h---------------~~~v~~l~~---------spdg~~l~s~s~dg~i~i 444 (490)
+-...+.|+.+++. ++.. ...+.+. -..-..|++ .++|.++++-...+.|+.
T Consensus 290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~ 369 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV 369 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence 55567789987765 2321 1122111 123577999 788888888778889999
Q ss_pred EEcCCCeEEEEEecC-------------------CCEEEEEEC-CCCCEEEEEECCCcEEEEEee
Q 011224 445 WSLKEGKIVKTYTGN-------------------GGIFEVCWN-KEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 445 w~~~~~~~~~~~~~~-------------------~~v~~~~~~-~~g~~la~~~~d~~v~v~~~~ 489 (490)
++. +|.+. ++.+. .....++++ ++|+++++=..++.|+.+++.
T Consensus 370 ~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 370 LTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 985 66544 33221 126789999 678888887889999998864
No 276
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.33 E-value=3.9e-05 Score=80.63 Aligned_cols=194 Identities=11% Similarity=0.044 Sum_probs=103.4
Q ss_pred CeEEEEEc-CCCCEEEEEeC-CC----eEEEEECCCc-eeEEecCC-CCCEEEEEecCCCCEEEEEeCCC-----eEEEE
Q 011224 203 DVTTLDWN-GEGTLLATGSY-DG----QARIWSTNGD-LKCTLSKH-KGPIFSLKWNKKGDYLLTGSCDK-----TAIVW 269 (490)
Q Consensus 203 ~V~~~~~s-~~~~~l~sg~~-dg----~i~iw~~~~~-~~~~~~~h-~~~V~~l~~~~~~~~l~s~s~D~-----~v~iw 269 (490)
.+...+|| |||++|+-+.. +| .|+++++.+. ... ..+ .....++.|+|+++.|+....|. .|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI--ADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC--CCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC--CccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 57788999 99998875433 22 5999998765 311 111 11124678999998887766542 23333
Q ss_pred EccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcCCCCEEEEEeC---
Q 011224 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD--- 345 (490)
Q Consensus 270 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~--- 345 (490)
++.++.. .....+. ........+.|+|||++|+..+.
T Consensus 253 ~lgt~~~---------------------------------------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 293 (751)
T 2xe4_A 253 VMGKLQS---------------------------------------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE 293 (751)
T ss_dssp ETTSCGG---------------------------------------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS
T ss_pred ECCCCch---------------------------------------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCC
Confidence 3332210 0111221 12234567899999998876553
Q ss_pred CCeEEEEecCCCc-ee--eeec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECC----CcEEEEeCCCCeEEEE-eeC
Q 011224 346 DVTAKIWNMKQDK-YV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFD----STVKLWDVELGKLLYS-LNG 416 (490)
Q Consensus 346 dg~i~iwd~~~~~-~~--~~~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d----g~i~iwd~~~~~~~~~-~~~ 416 (490)
...|.++|+.++. .. ..+. ......+++.|+..+ .+++....+ ..|..+++.++..... +..
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~---------~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~ 364 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS---------HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD 364 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT---------EEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC---------EEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC
Confidence 3467888887652 12 2222 233444555543322 234444433 3566667664211112 223
Q ss_pred CCC--CEEEEEECCCCCEEEEEeCCCc--EEEEEc
Q 011224 417 HRE--PVYSLAFSPTGEYLASGSLDKS--MHIWSL 447 (490)
Q Consensus 417 h~~--~v~~l~~spdg~~l~s~s~dg~--i~iw~~ 447 (490)
+.. .+..+.+. .+.++++...++. |.++++
T Consensus 365 ~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 365 HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 333 34556654 2345566777775 445554
No 277
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.33 E-value=0.0013 Score=61.17 Aligned_cols=226 Identities=9% Similarity=0.008 Sum_probs=136.1
Q ss_pred CCeEEEEECCCce--eEEecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEccCcceeE-eeee--eccCeEEEEccCC
Q 011224 222 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQ-QFEF--HSGPTLDVDWRNN 295 (490)
Q Consensus 222 dg~i~iw~~~~~~--~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~~~~~-~~~~--~~~~~~~~~~~~~ 295 (490)
...|+..++.+.. ...+......+.++.|++.+..| .+-...+.|..+++....... .+.. ....-+.++|...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 3577888876542 11122222346789999865555 455567889999987663221 1111 1222356667677
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe--CCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
..+++-...+.|.+++.........+.........+++.|.+..|+.+. ..+.|...++........+...-.....+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 7777777888999998876543333334445678999998766555554 25778888876433222122223445789
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 453 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~ 453 (490)
+++|++. .+..+-+..+.|..+|+........+.+.......|++.. +.++.+-...+.|..++..+|+..
T Consensus 172 avd~~~~--------~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 172 TLDYEEQ--------KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEeccCC--------EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 9988654 2444555678899999864322222232334457777753 345556566789999998877655
Q ss_pred EEE
Q 011224 454 KTY 456 (490)
Q Consensus 454 ~~~ 456 (490)
..+
T Consensus 243 ~~i 245 (318)
T 3sov_A 243 REI 245 (318)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.32 E-value=0.0022 Score=59.95 Aligned_cols=270 Identities=9% Similarity=0.029 Sum_probs=141.2
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
..+.+|.|.+.+..++ ++..+.|. +....++. .... ..........+..+.|.+ +..++ ++..
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~t-W~~~------------~~~~~~~~~~~~~i~~~~-~~~~~-~g~~ 98 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQT-WEPR------------TLVLDHSDYRFNSVSFQG-NEGWI-VGEP 98 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEEE-EESSTTSS-CEEC------------CCCCSCCCCEEEEEEEET-TEEEE-EEET
T ss_pred CcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCC-CeEC------------CCCCCCCCccEEEEEecC-CeEEE-EECC
Confidence 4689999988888777 45677653 22222221 0000 000011134578888876 44444 4556
Q ss_pred CeEEEEECCCcee-EEec---CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceE
Q 011224 223 GQARIWSTNGDLK-CTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 298 (490)
Q Consensus 223 g~i~iw~~~~~~~-~~~~---~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
+.|.. ..++... ..+. .+.+.++.+.+.+++..++++ .++.|..-.=....+..........+..+.+.++..+
T Consensus 99 g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~ 176 (327)
T 2xbg_A 99 PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEY 176 (327)
T ss_dssp TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCE
T ss_pred CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcE
Confidence 65544 3333221 1111 234567888877766555554 4565433211122344433333344566666555455
Q ss_pred EEEcCCCeEEEEEcC---CCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecc----ccccEE
Q 011224 299 ATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIY 371 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~ 371 (490)
+..+..+.++...-. .-.++ -.+....+..+.+.+++.+++ ++.+|.+.+++...++.-..+.. ....+.
T Consensus 177 ~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 177 VAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp EEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred EEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 555555555544321 11222 123455788899999987664 55678887764222322111211 123578
Q ss_pred EEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee---CCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Q 011224 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---GHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~ 446 (490)
.+.+.+++. ++++ +.+|.| ++..+.++.-..+. .+...+++|.|.+++. +++++.+|.|.-++
T Consensus 254 ~v~~~~~~~---------~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 254 DLAYRTPNE---------VWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EEEESSSSC---------EEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EEEecCCCE---------EEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 888887653 4444 457777 44444444333333 2235678899976555 55666788777665
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.32 E-value=0.0021 Score=59.65 Aligned_cols=213 Identities=12% Similarity=0.044 Sum_probs=127.9
Q ss_pred CeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCC----CcceeEecCCCCCeeEEEEcCCC
Q 011224 264 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNCVKWDPTG 337 (490)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~v~~v~~~~~~ 337 (490)
..|+..|+.+......+. ....+..+.|. .+..+++....+.|+.++... ......+...-.....+++.+.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 568888888776554332 22344566664 455667777788999888765 22222232223456789998754
Q ss_pred -CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-CcEEEEeCCCCeEEEEe-
Q 011224 338 -SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL- 414 (490)
Q Consensus 338 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~- 414 (490)
+++++-...+.|.++++........+.........+++.|.+. .++.+.... +.|...++. +.....+
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g--------~ly~~d~~~~~~I~~~~~d-G~~~~~~~ 159 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLN-GVDIYSLV 159 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETT-SCCEEEEE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCC--------EEEEEccCCCCeEEEEcCC-CCCeEEEE
Confidence 5556667788999999875433222222334567888887543 233343333 678888875 3333332
Q ss_pred eCCCCCEEEEEECCCCCEEEE-EeCCCcEEEEEcCCCeEEEEEec---CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 415 NGHREPVYSLAFSPTGEYLAS-GSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 415 ~~h~~~v~~l~~spdg~~l~s-~s~dg~i~iw~~~~~~~~~~~~~---~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
...-...+.|+++|++..|.. -+..+.|..+++........... .....++++. .+..+++-..++.|..++
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEe
Confidence 223345789999998766654 45567999999874332222222 2346788885 355666667777888776
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.32 E-value=0.0011 Score=62.54 Aligned_cols=214 Identities=9% Similarity=0.010 Sum_probs=128.3
Q ss_pred CCeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC-CCE
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSL 339 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~-~~~ 339 (490)
...|+..++.......... ....+..+.|. .+..+.+-...+.|+.++.........+.........+++.+. +.+
T Consensus 52 ~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l 130 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 130 (349)
T ss_dssp BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeE
Confidence 3457777776654433322 22234555554 4556666677788888887765543333333345678999875 455
Q ss_pred EEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-CcEEEEeCCCCeEEEEe-eCC
Q 011224 340 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLLYSL-NGH 417 (490)
Q Consensus 340 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~-~~h 417 (490)
+++-...+.|.+.++........+.........+++.|.+. .++.+-... +.|..+++.... ...+ ...
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g--------~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~ 201 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGSG-RRIIADTH 201 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCS-CEESCCSS
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcC--------eEEEeccCCCCEEEEEeCCCCC-cEEEEECC
Confidence 56666778999999875543322323334567888888543 244444444 778888876332 2222 222
Q ss_pred CCCEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEEEEe-cCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 418 REPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l~-s~s~dg~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
....+.|+|+|++..|. +-+..+.|..+++........+. ......++++ ..+....+-..++.|..+|
T Consensus 202 ~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 34568999998766554 44556789999986543333332 2345778888 4455556666677777665
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.29 E-value=0.00065 Score=65.15 Aligned_cols=221 Identities=10% Similarity=0.009 Sum_probs=133.0
Q ss_pred EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEE
Q 011224 256 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 333 (490)
Q Consensus 256 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~ 333 (490)
+|+.+. ...|+..++.......... ....+..+.|. .+..|++-...+.|+.++.........+.........+++
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 166 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred eeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence 444333 3568888887665443332 22334556654 4556667677888888888765543333333345677888
Q ss_pred cCCC-CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-CcEEEEeCCCCeEE
Q 011224 334 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVELGKLL 411 (490)
Q Consensus 334 ~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-g~i~iwd~~~~~~~ 411 (490)
.+.+ .++++-...+.|.+.++........+.........+++.|.+. .++.+-... +.|..+++......
T Consensus 167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~ 238 (386)
T 3v65_B 167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG--------TIYWTDWGNTPRIEASSMDGSGRR 238 (386)
T ss_dssp ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCSCE
T ss_pred EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC--------eEEEeccCCCCEEEEEeCCCCCcE
Confidence 8754 5556666678898888765443322333334567888887653 234444444 67888887643322
Q ss_pred EEeeCCCCCEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEEEEe-cCCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 412 YSLNGHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 412 ~~~~~h~~~v~~l~~spdg~~l~-s~s~dg~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
..+.......+.|+|+|++..|. +-+..+.|..+++........+. +.....++++ ..+.++.+-..++.|..+|
T Consensus 239 ~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 239 IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 22222334568999998766554 44566789999986543333332 2345788888 4455666666777887776
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.25 E-value=0.0018 Score=57.58 Aligned_cols=200 Identities=9% Similarity=0.156 Sum_probs=125.9
Q ss_pred EecCCCCCEEEEEecCCCCEEEE-EeCCCeEEEEEccCcceeEeeeeec-cCeEEEEccCCceEE-EEcCCCeEEEEEcC
Q 011224 237 TLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFA-TSSTDNMIYVCKIG 313 (490)
Q Consensus 237 ~~~~h~~~V~~l~~~~~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~ 313 (490)
.+.+-.+.+.+++|+|+++.|++ ...++.|...|+. ++....+.... ...-.+.+..+..++ +.-.++.++++.+.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 45566678999999998776654 6678889999987 77776664422 345566665555564 44566788888876
Q ss_pred CCcce---eEec------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCC---Cceeeeec-------cccccEEEEE
Q 011224 314 ENRPI---KTFA------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLR-------EHSKEIYTIR 374 (490)
Q Consensus 314 ~~~~~---~~~~------~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~-------~~~~~i~~v~ 374 (490)
....+ .... ........++|+|.++.|.++.......||.+.. ...+..+. .......+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 54422 1211 1234578999999997776666655556665531 11111110 1122456778
Q ss_pred EcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe--eC-C------CCCEEEEEECCCCCEEEEEeCCCcEEEE
Q 011224 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NG-H------REPVYSLAFSPTGEYLASGSLDKSMHIW 445 (490)
Q Consensus 375 ~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~--~~-h------~~~v~~l~~spdg~~l~s~s~dg~i~iw 445 (490)
+.|... .+++.......|..+|.. ++.+..+ .. . -..-..|+|.++|++.++ |.-+.+++|
T Consensus 180 ~dp~tg--------~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKN--------TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTT--------EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCC--------eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 877643 356666777889999976 5555443 31 1 124588999999985555 777777776
Q ss_pred Ec
Q 011224 446 SL 447 (490)
Q Consensus 446 ~~ 447 (490)
..
T Consensus 250 ~~ 251 (255)
T 3qqz_A 250 TP 251 (255)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.0035 Score=60.33 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=132.6
Q ss_pred EEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCC----cceeEecCCCCCee
Q 011224 256 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVN 329 (490)
Q Consensus 256 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~v~ 329 (490)
+|+.+. ...|+..++.......... ....+..++|. .+..+.+-...+.|+.+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344333 4678888887765544332 23345566664 4566677777788888887642 22233333345677
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE-ECCCcEEEEeCCC
Q 011224 330 CVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVEL 407 (490)
Q Consensus 330 ~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg-s~dg~i~iwd~~~ 407 (490)
.+++.+ .++++++-...+.|.+.++........+.........|++.|.+. .++.+- +..+.|...++..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g--------~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTT--------EEEEEECSSSCCEEEEETTS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccC--------eEEEEeCCCCCEEEEEeCCC
Confidence 899987 455666666788999999876544333333344567888888543 233332 2246788888764
Q ss_pred CeEEEEeeCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEEEEec---CCCEEEEEECCCCCEEEEEECCCcE
Q 011224 408 GKLLYSLNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 408 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~-s~dg~i~iw~~~~~~~~~~~~~---~~~v~~~~~~~~g~~la~~~~d~~v 483 (490)
......+.......+.|+++|++..|..+ +..+.|..+++........... .....+++. ..+.++.+-..++.|
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V 313 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAI 313 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSE
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeE
Confidence 33222233333567899999887766555 4567899999865443333332 234677777 334455566667778
Q ss_pred EEEE
Q 011224 484 CVLD 487 (490)
Q Consensus 484 ~v~~ 487 (490)
..+|
T Consensus 314 ~~~~ 317 (400)
T 3p5b_L 314 FSAN 317 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.20 E-value=0.0029 Score=61.53 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=129.5
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC---Ce-EEEEEccCcce
Q 011224 203 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---KT-AIVWDVKTEEW 276 (490)
Q Consensus 203 ~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D---~~-v~iwd~~~~~~ 276 (490)
....++|+++ ...|+.+...+.|+.++........+........+|+|+++++.+++.... .. +...+.. +.+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCe
Confidence 4568999984 344555544488999998665555555555568999999999944444321 22 3333322 222
Q ss_pred e--EeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEe-c-CCCCCeeEEEEcCCCC-EEEEEeCCCeE
Q 011224 277 K--QQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTF-A-GHQGEVNCVKWDPTGS-LLASCSDDVTA 349 (490)
Q Consensus 277 ~--~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~-~-~h~~~v~~v~~~~~~~-~l~s~~~dg~i 349 (490)
. ..+. .......+.+. ....+++...++.|+.++...+.....+ . +....-..++|+|+++ ++++-...+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 1111 11112223332 3445555566778888887655431222 1 1222334799999998 55566667889
Q ss_pred EEEecC--CCcee--eeeccc---------------cccEEEEEE---------cCCCCCCCCCCCcEEEEEEECCCcEE
Q 011224 350 KIWNMK--QDKYV--HDLREH---------------SKEIYTIRW---------SPTGSGTNNPNQQLILASASFDSTVK 401 (490)
Q Consensus 350 ~iwd~~--~~~~~--~~~~~~---------------~~~i~~v~~---------~p~g~~~~~~~~~~~l~sgs~dg~i~ 401 (490)
+.+++. ++... ..+.+. -.....+++ .+.+. +.++-...+.|+
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~---------lyvaD~~n~~I~ 368 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD---------FYFCDRDSHTVR 368 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE---------EEEEETTTTEEE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc---------EEEEECCCCEEE
Confidence 998865 23211 111110 112455666 44432 445555667888
Q ss_pred EEeCCCCeEEEEeeCC------------------CCCEEEEEEC-CCCCEEEEEeCCCcEEEEEcC
Q 011224 402 LWDVELGKLLYSLNGH------------------REPVYSLAFS-PTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 402 iwd~~~~~~~~~~~~h------------------~~~v~~l~~s-pdg~~l~s~s~dg~i~iw~~~ 448 (490)
.++. ++... ++.+. -..-..|+++ ++|.++++=...+.|+.++++
T Consensus 369 ~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8885 45433 33221 1125778888 667666666667778877654
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=0.0032 Score=61.71 Aligned_cols=240 Identities=12% Similarity=0.153 Sum_probs=140.7
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEEECCCceeEEecCC----CCCEEEEEe-------cCCCCEEEEEeCCC-e---
Q 011224 203 DVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKW-------NKKGDYLLTGSCDK-T--- 265 (490)
Q Consensus 203 ~V~~~~~s~~--~~~l~sg~~dg~i~iw~~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~l~s~s~D~-~--- 265 (490)
....|+|.|. ++++++-...+.|++.|.....+..+..- ......|+| ++++.+|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 44444444456788888877665554322 234789999 99998777665543 2
Q ss_pred ---EEEEEccC-cceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcC-CCCEE
Q 011224 266 ---AIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLL 340 (490)
Q Consensus 266 ---v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l 340 (490)
|.+.+... +.+.. .. ++ ..+..+. ...+++++| ++.++
T Consensus 220 ~~~V~~i~r~~~G~~~~--------------~~---------~~----------~~v~~~~----~p~giavdp~~g~LY 262 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDD--------------RS---------DI----------QLIAAYK----QCNGATIHPINGELY 262 (496)
T ss_dssp EEEEEEEECCTTSCCST--------------TS---------CE----------EEEEEES----CCCCEEECTTTCCEE
T ss_pred CceEEEEecCCCCceee--------------cc---------cc----------eeeccCC----CceEEEEcCCCCeEE
Confidence 33333211 11100 00 00 0011111 234678899 45666
Q ss_pred EEEeCCCeEEEEecC-------CCce-----------eeee-c-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcE
Q 011224 341 ASCSDDVTAKIWNMK-------QDKY-----------VHDL-R-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 400 (490)
Q Consensus 341 ~s~~~dg~i~iwd~~-------~~~~-----------~~~~-~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i 400 (490)
++-..++.|..+|+. ++.. ...+ . ......+.++|+|++. .+.++-+....|
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~--------~lYvaD~~~h~I 334 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK--------YAYFGVINNHYF 334 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS--------EEEEEETTTTEE
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC--------EEEEEeCCCCEE
Confidence 677788889999987 4443 1111 1 1223457899999985 234444566788
Q ss_pred EEEeC--CCCeEE--EEeeCC---C------------CCEE-EEEEC-------CCCCEEEEEeCCCcEEEEEcCCCeEE
Q 011224 401 KLWDV--ELGKLL--YSLNGH---R------------EPVY-SLAFS-------PTGEYLASGSLDKSMHIWSLKEGKIV 453 (490)
Q Consensus 401 ~iwd~--~~~~~~--~~~~~h---~------------~~v~-~l~~s-------pdg~~l~s~s~dg~i~iw~~~~~~~~ 453 (490)
+.++. ..+... ..+.+. . ..-. .++.. ++|.++++=....+|+.++ .+|.+
T Consensus 335 ~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v- 412 (496)
T 3kya_A 335 MRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV- 412 (496)
T ss_dssp EEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-
T ss_pred EEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-
Confidence 88554 333220 122111 0 1233 45554 5677777777788999998 46654
Q ss_pred EEEecC-------------------------CCEEEEEECCC-CCEEEEEECCCcEEEEEee
Q 011224 454 KTYTGN-------------------------GGIFEVCWNKE-GDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 454 ~~~~~~-------------------------~~v~~~~~~~~-g~~la~~~~d~~v~v~~~~ 489 (490)
.++.+. .....++++++ |+++++=..++.|+.+++.
T Consensus 413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence 444321 12578999997 8888888889999998864
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.12 E-value=0.0052 Score=64.32 Aligned_cols=226 Identities=12% Similarity=0.074 Sum_probs=136.3
Q ss_pred CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEE-EEEeCCCeEEEEEccCc----ceeEeee--eeccCeEEEEccC
Q 011224 222 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTE----EWKQQFE--FHSGPTLDVDWRN 294 (490)
Q Consensus 222 dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l-~s~s~D~~v~iwd~~~~----~~~~~~~--~~~~~~~~~~~~~ 294 (490)
...|+..++.+.....+......+.+|+|++....| ++-...+.|+.+++... .....+. .....-++++|..
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 356777777654444444445667899999865555 45556688998988753 2222222 1122346677878
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CC-CeEEEEecCCCceeeeeccccccEEE
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYT 372 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~ 372 (490)
...|++-...+.|++.++........+.........|+++|.+.+|+... .. +.|...++........+.........
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEE
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceE
Confidence 78888888889999999876554333434445688999999765555444 33 67888888655433333333356678
Q ss_pred EEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeC--CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCC
Q 011224 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG--HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450 (490)
Q Consensus 373 v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~ 450 (490)
|++.+... .+..+-...+.|...++........+.. ......+|++..+ .++++-...+.|...+..+|
T Consensus 563 LavD~~~~--------~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 563 ITLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEETTTT--------EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTC
T ss_pred EEEecCCC--------eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCC
Confidence 88886653 2333444567888888864333222322 2223456776433 44455556688888887777
Q ss_pred eEEEEE
Q 011224 451 KIVKTY 456 (490)
Q Consensus 451 ~~~~~~ 456 (490)
+.+..+
T Consensus 634 ~~~~~l 639 (791)
T 3m0c_C 634 SDVNLL 639 (791)
T ss_dssp CCCEEE
T ss_pred cceEEe
Confidence 654444
No 287
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.08 E-value=0.0029 Score=58.63 Aligned_cols=192 Identities=17% Similarity=0.254 Sum_probs=121.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCc---------eEEEEcC--CCeEEEEEcCC-CcceeE
Q 011224 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV---------SFATSST--DNMIYVCKIGE-NRPIKT 320 (490)
Q Consensus 253 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--d~~i~~~~~~~-~~~~~~ 320 (490)
....++.....+-+.+||+ .++.++.+.. +.+..++..... .+++.-. +++|.++++.. ..++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 3456676777788999999 6776666543 444555444322 2344445 68999998842 233444
Q ss_pred ecC------CC-CCeeEEEE--cCC-CC-EEEEEeCCCeEEEEecC-------CCceeeeeccccccEEEEEEcCCCCCC
Q 011224 321 FAG------HQ-GEVNCVKW--DPT-GS-LLASCSDDVTAKIWNMK-------QDKYVHDLREHSKEIYTIRWSPTGSGT 382 (490)
Q Consensus 321 ~~~------h~-~~v~~v~~--~~~-~~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~v~~~p~g~~~ 382 (490)
+.. .. ..+..+++ +|. ++ +++....+|.+..|++. +.+.+++|... ..+..+...+...
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g-- 192 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYG-- 192 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTT--
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCC--
Confidence 421 11 45666777 774 44 57788889999999882 33556666543 4566666666543
Q ss_pred CCCCCcEEEEEEECCCcEEEEeCC-----CCeEEEEee-CC-CCCEEEEEE--CCCCC-EEEEEe-CCCcEEEEEcC-CC
Q 011224 383 NNPNQQLILASASFDSTVKLWDVE-----LGKLLYSLN-GH-REPVYSLAF--SPTGE-YLASGS-LDKSMHIWSLK-EG 450 (490)
Q Consensus 383 ~~~~~~~~l~sgs~dg~i~iwd~~-----~~~~~~~~~-~h-~~~v~~l~~--spdg~-~l~s~s-~dg~i~iw~~~-~~ 450 (490)
.|..+-.+.-|..++.+ +++.+..+. ++ ...+..|++ .++++ ||++++ .+++..+|+.. +.
T Consensus 193 -------~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~ 265 (355)
T 3amr_A 193 -------RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN 265 (355)
T ss_dssp -------EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred -------eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence 57778888666666644 345665542 22 236888877 56666 665555 67899999996 67
Q ss_pred eEEEEEe
Q 011224 451 KIVKTYT 457 (490)
Q Consensus 451 ~~~~~~~ 457 (490)
+.+..+.
T Consensus 266 ~~vg~f~ 272 (355)
T 3amr_A 266 KYVADFR 272 (355)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 7777773
No 288
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.07 E-value=0.0038 Score=58.91 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=39.1
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-------EEEEEecCCCEEEEEECCCCCEEEEEE
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-------IVKTYTGNGGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~-------~~~~~~~~~~v~~~~~~~~g~~la~~~ 478 (490)
....++| .+|.++++.-..+.|...++.... ....+.....+..+++.|||.++++..
T Consensus 269 ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 269 PPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 4567888 567777766667788888775432 112223345789999999998777764
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.06 E-value=0.0012 Score=61.08 Aligned_cols=181 Identities=14% Similarity=0.229 Sum_probs=119.7
Q ss_pred eEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCC----C---E-EEEEeC--CCeEEEEecC--CCceeeeec
Q 011224 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG----S---L-LASCSD--DVTAKIWNMK--QDKYVHDLR 364 (490)
Q Consensus 297 ~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~----~---~-l~s~~~--dg~i~iwd~~--~~~~~~~~~ 364 (490)
.++.....+-+.++++ .++.++.+.. +.++.|..-|.- + + +++... +++|++|++. ++ .+..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeecc
Confidence 3555666788999999 7777777653 667888777632 2 2 344444 6899999773 33 243332
Q ss_pred c------cc-ccEEEEEE--cCCCCCCCCCCCcEEEEEEECCCcEEEEeCC-------CCeEEEEeeCCCCCEEEEEECC
Q 011224 365 E------HS-KEIYTIRW--SPTGSGTNNPNQQLILASASFDSTVKLWDVE-------LGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 365 ~------~~-~~i~~v~~--~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-------~~~~~~~~~~h~~~v~~l~~sp 428 (490)
. .. ..++.+++ +|.+ +..+++....+|.+..|++. +.+.+.++.- ...+..++..+
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~-------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd 189 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKT-------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADD 189 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTT-------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEET
T ss_pred ccccCcCCCCCCeeEEEEEecCCC-------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcC
Confidence 1 11 44555666 5532 23467778888999999882 3355666663 35688899999
Q ss_pred CCCEEEEEeCCCcEEEEEcC-----CCeEEEEEecC---CCEEEEEE--CCCCC-EEEEEE-CCCcEEEEEee
Q 011224 429 TGEYLASGSLDKSMHIWSLK-----EGKIVKTYTGN---GGIFEVCW--NKEGD-KIAACF-ANHTVCVLDFR 489 (490)
Q Consensus 429 dg~~l~s~s~dg~i~iw~~~-----~~~~~~~~~~~---~~v~~~~~--~~~g~-~la~~~-~d~~v~v~~~~ 489 (490)
....|..+-.+.-|..++.+ +++++..+... ..+-.|+. .++|+ +|++++ .+.++.|||.+
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 88999999998777777754 35566655332 35778887 66776 555555 57799999863
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.06 E-value=0.0071 Score=56.09 Aligned_cols=216 Identities=8% Similarity=-0.013 Sum_probs=125.2
Q ss_pred CCeEEEEEccCcc--eeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcc-eeEecCCCCCeeEEEEcCC-
Q 011224 263 DKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPT- 336 (490)
Q Consensus 263 D~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~v~~~~~- 336 (490)
...|+..++.... ....+ ........++|. .+..+.+-...+.|+.++...... ...+...-.....+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~ 90 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 90 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEE-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred cCeEEEEECCCCceEEEEEe-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence 4678888887653 21111 122234456664 456677777788888888765532 1222222345678899874
Q ss_pred CCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEE-ECCCcEEEEeCCCCeEEEEee
Q 011224 337 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASA-SFDSTVKLWDVELGKLLYSLN 415 (490)
Q Consensus 337 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~ 415 (490)
+.++++-...+.|.++++........+.........+++.|.+. .++.+- +..+.|...++........+.
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g--------~ly~td~~~~~~I~r~~~dG~~~~~~~~ 162 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSG--------FMYWTDWGEVPKIERAGMDGSSRFIIIN 162 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGT--------EEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCC--------EEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence 55566666778999999875433222223334567888887543 133332 235778888776322211222
Q ss_pred CCCCCEEEEEECCCCCEEE-EEeCCCcEEEEEcCCCeEEEEEe-cCCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 416 GHREPVYSLAFSPTGEYLA-SGSLDKSMHIWSLKEGKIVKTYT-GNGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 416 ~h~~~v~~l~~spdg~~l~-s~s~dg~i~iw~~~~~~~~~~~~-~~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
..-..-+.|+|+|++..|. +=+..+.|..+++.......... ......++++.. +..+.+-..++.|..++.
T Consensus 163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 2234468999999766555 44567889999986433322223 233467777753 345555556677777663
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.97 E-value=0.00091 Score=61.42 Aligned_cols=159 Identities=13% Similarity=0.128 Sum_probs=108.3
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEe-CCCeEEEEecCCCceeee-ecc----c--cccEEEEEE---cCCCCCCCCCCCcE
Q 011224 321 FAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHD-LRE----H--SKEIYTIRW---SPTGSGTNNPNQQL 389 (490)
Q Consensus 321 ~~~h~~~v~~v~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~----~--~~~i~~v~~---~p~g~~~~~~~~~~ 389 (490)
+......-.+++|++....|..++ ..++|..|+...+..... +.. . ...+..+.| .|.+.
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr--------- 78 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR--------- 78 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE---------
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc---------
Confidence 334445567899988665555555 799999999875543322 211 0 113578888 57653
Q ss_pred EEEEEE-------------CCCcEEEEeCC---CCeEEEEee--CC-----------CCCEEEEEECCCCCEEEEEeCC-
Q 011224 390 ILASAS-------------FDSTVKLWDVE---LGKLLYSLN--GH-----------REPVYSLAFSPTGEYLASGSLD- 439 (490)
Q Consensus 390 ~l~sgs-------------~dg~i~iwd~~---~~~~~~~~~--~h-----------~~~v~~l~~spdg~~l~s~s~d- 439 (490)
++++.. .+..|..+|+. +++.++... .. ....++++..++|+..++++.-
T Consensus 79 L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~ 158 (334)
T 2p9w_A 79 LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM 158 (334)
T ss_dssp EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS
T ss_pred EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC
Confidence 444333 26779999999 787776554 11 1248899999999999999988
Q ss_pred CcEEEEEcCCCeEEEEEe-c------CCCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 440 KSMHIWSLKEGKIVKTYT-G------NGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 440 g~i~iw~~~~~~~~~~~~-~------~~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
+.|...+... +.+..+. . ..+.+.++++|+|+.|++....+.+..+|++
T Consensus 159 ~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 159 PAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp CEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred CeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 8888777653 3333321 1 1236799999999988888669999998864
No 292
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.90 E-value=0.0068 Score=53.93 Aligned_cols=190 Identities=11% Similarity=0.100 Sum_probs=115.7
Q ss_pred CeEEEEcc--CCceEEEEcCCCeEEEEEcCCCcceeEec-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce---
Q 011224 286 PTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--- 359 (490)
Q Consensus 286 ~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--- 359 (490)
.+..+.+. .+..+++...++.|+..+.. ++.++.+. +-......|++.+++.++++.-.++.+.++++.....
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~ 106 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI 106 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence 35555554 34566667778889988887 66655553 2224677899999998877766778899988765442
Q ss_pred eeeec------cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC-cEEEEeC-CCCeEEEEee-------CCCCCEEEE
Q 011224 360 VHDLR------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS-TVKLWDV-ELGKLLYSLN-------GHREPVYSL 424 (490)
Q Consensus 360 ~~~~~------~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg-~i~iwd~-~~~~~~~~~~-------~h~~~v~~l 424 (490)
+.... ........++|+|.+. .++++.-.+. .|.-|+- .....+..+. .+...+.+|
T Consensus 107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~--------~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 107 LKKIKIPLQESPTNCGFEGLAYSRQDH--------TFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp EEEEECCCSSCCCSSCCEEEEEETTTT--------EEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred eeeeccccccccccCCcceEEEeCCCC--------EEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 12221 1233457899988864 1333333332 4444441 0111111111 123346889
Q ss_pred EECCCC-CEEEEEeCCCcEEEEEcCCCeEEEEEecC----------CCEEEEEECCCCCEEEEEECCCcEEEE
Q 011224 425 AFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN----------GGIFEVCWNKEGDKIAACFANHTVCVL 486 (490)
Q Consensus 425 ~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~----------~~v~~~~~~~~g~~la~~~~d~~v~v~ 486 (490)
+|+|.. .+++.....+.|.++|.. |+++..+.-. ...-.++|.++|++.+++-.| .++++
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n-~~y~f 249 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN-RFYRF 249 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT-EEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc-eEEEE
Confidence 999964 556666677889999965 6666665432 246899999999977775444 44444
No 293
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.88 E-value=0.017 Score=60.40 Aligned_cols=216 Identities=10% Similarity=-0.008 Sum_probs=126.9
Q ss_pred CCCeEEEEEccCcceeEeeeeeccCeEEEEc--cCCceEEEEcCCCeEEEEEcCCC----cceeEecCCCCCeeEEEEcC
Q 011224 262 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVNCVKWDP 335 (490)
Q Consensus 262 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~----~~~~~~~~h~~~v~~v~~~~ 335 (490)
....|+..++....+...... ...+..+++ ..+..|++-...+.|+.+++... .....+.........|++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 345678778776654443322 233444554 45666777777788888887642 22333333445677899988
Q ss_pred CC-CEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC-CCcEEEEeCCCCeEEEE
Q 011224 336 TG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYS 413 (490)
Q Consensus 336 ~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~ 413 (490)
.+ +++++-...+.|.+.++........+.........|++.|... .++.+-.. .+.|...++........
T Consensus 481 ~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g--------~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHG--------FMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTT--------EEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCC--------CEEEecCCCCCeEEEEecCCCceEEE
Confidence 76 4556666788999999875543333333344578889888643 13333222 36788888864443333
Q ss_pred eeCCCCCEEEEEECCCCCEEEEE-eCCCcEEEEEcCCCeEEEEEecC---CCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 414 LNGHREPVYSLAFSPTGEYLASG-SLDKSMHIWSLKEGKIVKTYTGN---GGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 414 ~~~h~~~v~~l~~spdg~~l~s~-s~dg~i~iw~~~~~~~~~~~~~~---~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
+.......+.|++++.+..|..+ ...+.|..+++............ ....+|+...+ .++++-..++.|...|
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 629 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEe
Confidence 33334567999999877666555 45678999998654443333321 23567766332 3444445566676665
No 294
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=0.023 Score=55.65 Aligned_cols=113 Identities=8% Similarity=0.071 Sum_probs=65.2
Q ss_pred eeEEEECCC-CC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEE-------cCCCCE
Q 011224 145 VCACAWSPA-GS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-------NGEGTL 215 (490)
Q Consensus 145 V~~~~~sp~-~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------s~~~~~ 215 (490)
...|+|+|. +. ++++-...+.|++.|+.++. +..+ .............++| +++|.+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----------v~~l---~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----------LSSP---LNINTIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----------EEEE---ECCTTSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----------EEEE---EccCccccCCCcEEEEeecccccCCCCCE
Confidence 568999993 44 44444444678888876542 1111 1111112335788999 999997
Q ss_pred EEEEeCCC-------eEEEEECCC--cee-----EEecCCCCCEEEEEecCCC-CEEEEEeCCCeEEEEEcc
Q 011224 216 LATGSYDG-------QARIWSTNG--DLK-----CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK 272 (490)
Q Consensus 216 l~sg~~dg-------~i~iw~~~~--~~~-----~~~~~h~~~V~~l~~~~~~-~~l~s~s~D~~v~iwd~~ 272 (490)
|+.+...+ .|.+.+... ... ..+.... ...+++.+|++ ..+++-..++.|..+|+.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 77666554 255554332 221 1222212 23567889954 445566677889999987
No 295
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.86 E-value=0.00012 Score=76.06 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=128.6
Q ss_pred CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEE-eCCCeEEEEEccC----cceeEeeee--eccCeEEEEccCC
Q 011224 223 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKT----EEWKQQFEF--HSGPTLDVDWRNN 295 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~----~~~~~~~~~--~~~~~~~~~~~~~ 295 (490)
+.|+..++.+.....+......+.+|+|++.+..|+.+ ...+.|+.+++.+ ......+.. ....-+.++|...
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g 465 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 465 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC
Confidence 56777776654433333333455789999877766655 4567899999875 222111111 1112244556666
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe-CC-CeEEEEecCCCceeeeeccccccEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DD-VTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
..+++-...+.|.++++........+.........++++|.+.+|+... .. +.|..+++........+.........|
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGl 545 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 545 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCE
T ss_pred cEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEE
Confidence 6677767778888888765543333332234567889998655444433 22 677777765432211111122334578
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEee--CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 451 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~ 451 (490)
+|+|++. .+.++-+..+.|..+++........+. ........|++..+ .++++....+.|..++..+|+
T Consensus 546 avd~~~~--------~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 546 TLDLLSG--------RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EECTTTC--------CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred EEeccCC--------EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 8887653 244455667789999986432222221 11122345566544 445555667899999988888
Q ss_pred EEEEEec
Q 011224 452 IVKTYTG 458 (490)
Q Consensus 452 ~~~~~~~ 458 (490)
.+..+..
T Consensus 617 ~~~~i~~ 623 (699)
T 1n7d_A 617 DVNLLAE 623 (699)
T ss_dssp EEECCCT
T ss_pred ceEEeec
Confidence 7776643
No 296
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=0.00063 Score=66.23 Aligned_cols=152 Identities=11% Similarity=0.207 Sum_probs=95.0
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCC----cEE
Q 011224 327 EVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDS----TVK 401 (490)
Q Consensus 327 ~v~~v~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg----~i~ 401 (490)
....|+++| ++..|..+...+.|+.+|+..+.... +.........++|++++. .++++...++ .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~--------~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEAD--------SMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSS--------EEEEEECCSCTTSEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCC--------EEEEEeCCCCcccceEE
Confidence 456889998 34445555444889999987765433 333445678899999875 2344443222 233
Q ss_pred EEeCCCCeEE--EEeeCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEEcCCCeEEEEEe--cCCCEEEEEECCCCCE-EE
Q 011224 402 LWDVELGKLL--YSLNGHREPVYSLAFSP-TGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDK-IA 475 (490)
Q Consensus 402 iwd~~~~~~~--~~~~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iw~~~~~~~~~~~~--~~~~v~~~~~~~~g~~-la 475 (490)
+++.. +... ..+.. ......++++| +|.++++-..++.|..|+..++....... .......++|+|+|++ ++
T Consensus 209 ~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 209 ILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp EEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred EEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 33322 2111 12221 22357789999 67777777678899999998776533322 2234789999999994 45
Q ss_pred EEECCCcEEEEEee
Q 011224 476 ACFANHTVCVLDFR 489 (490)
Q Consensus 476 ~~~~d~~v~v~~~~ 489 (490)
+-..++.|.+++..
T Consensus 287 ~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 287 VVVNQHYILRSDYD 300 (430)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EECCCCEEEEEeCC
Confidence 55678889988753
No 297
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.78 E-value=0.021 Score=53.83 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=42.1
Q ss_pred CCEEEEEEC-------CCCCEEEEEeCCCcEEEEEcCC-CeEE--EEEe-c-CCCEEEEEECCCCCEEEEEE
Q 011224 419 EPVYSLAFS-------PTGEYLASGSLDKSMHIWSLKE-GKIV--KTYT-G-NGGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 419 ~~v~~l~~s-------pdg~~l~s~s~dg~i~iw~~~~-~~~~--~~~~-~-~~~v~~~~~~~~g~~la~~~ 478 (490)
.....++|. .+|.++++.-..+.|...++.. ++.. ..+. + ...+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356788884 5677777776778898888875 3332 2332 2 34689999999998777764
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.72 E-value=0.091 Score=57.49 Aligned_cols=321 Identities=15% Similarity=0.152 Sum_probs=164.6
Q ss_pred ccceeEEEECCC------CCEEEEEEC-CCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCC
Q 011224 142 TSEVCACAWSPA------GSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 214 (490)
Q Consensus 142 ~~~V~~~~~sp~------~~~l~sgs~-D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~ 214 (490)
...|.|+++.|. +.+++.|.. |++|+|+.+.+... .....+... .....|.-+.+ ....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~-----------~~~~~L~~~--~~p~si~l~~~-~~~~ 618 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL-----------LHKEMLGGE--IIPRSILMTTF-ESSH 618 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE-----------EEEEECCSS--CCEEEEEEEEE-TTEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe-----------EEEEECCCC--CCCcEEEEEEe-CCCc
Confidence 357999999864 368999996 99999999864221 111111110 01122333344 2346
Q ss_pred EEEEEeCCCeEEEEECC---Ccee---EEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeE
Q 011224 215 LLATGSYDGQARIWSTN---GDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~---~~~~---~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (490)
+|..|-.||.+.-+..+ +... ..+-| ..+|.-..+...+..-+-+..++...++--+ +.+. .-.....++.
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~-~s~l~~~~v~ 695 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV-FSNVNLKEVN 695 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE-EEEBSSSCCC
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE-EeccChHHhc
Confidence 88899999988666543 2221 12223 3455544454444443333345555555433 2211 1111111221
Q ss_pred EE-EccC---CceEEEEcCCCeEEEEEcCCCc--ceeEecCCCCCeeEEEEcCCCCEEEEEeCC----------------
Q 011224 289 DV-DWRN---NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDD---------------- 346 (490)
Q Consensus 289 ~~-~~~~---~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---------------- 346 (490)
.+ .|.. ...++... ++.+++..+.... +++.+. -...+..++++|..+.++.+..+
T Consensus 696 ~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 773 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS 773 (1158)
T ss_dssp EEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred eEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence 12 2321 23344333 4458887765432 222221 12456778888877765443311
Q ss_pred ---------------------------------CeEEEEecCCCceeeeeccc-cccEEEEEEcCCCCCCCCCCCcEEEE
Q 011224 347 ---------------------------------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILA 392 (490)
Q Consensus 347 ---------------------------------g~i~iwd~~~~~~~~~~~~~-~~~i~~v~~~p~g~~~~~~~~~~~l~ 392 (490)
+.|++.|..+.+.+..+.-. ...+.+++...-.. ....+|+
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~-----~~~~~lv 848 (1158)
T 3ei3_A 774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGK-----DPNTYFI 848 (1158)
T ss_dssp HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTT-----CCCCEEE
T ss_pred hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEcc-----CCCEEEE
Confidence 23566666666655444322 23344444322111 0112566
Q ss_pred EEE----------CCCcEEEEeCCCCeEEEE-eeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE-EEecCC
Q 011224 393 SAS----------FDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK-TYTGNG 460 (490)
Q Consensus 393 sgs----------~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~-~~~~~~ 460 (490)
.|. ..|.|.+|++..++.... -....++|++|+-- +|++||+. .+.|++|++...+.+. ......
T Consensus 849 VGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~ 925 (1158)
T 3ei3_A 849 VGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHYN 925 (1158)
T ss_dssp EEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEECC
T ss_pred EEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeeccc
Confidence 665 347899999865443221 12246789998632 35444433 4789999998665443 111122
Q ss_pred CEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 461 GIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 461 ~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
.+..+.....|++++.|..-..|.++-++
T Consensus 926 ~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 926 NIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp CSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred cEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 22233333457888888777778777654
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.65 E-value=0.07 Score=54.40 Aligned_cols=222 Identities=10% Similarity=0.009 Sum_probs=136.8
Q ss_pred CCCeEEEEECCCcee-EEec-CCCCCEEEEEecCCCCEEE-EEeCCCeEEEEEccCcceeEeeeee--ccCeEEEEccCC
Q 011224 221 YDGQARIWSTNGDLK-CTLS-KHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFH--SGPTLDVDWRNN 295 (490)
Q Consensus 221 ~dg~i~iw~~~~~~~-~~~~-~h~~~V~~l~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~ 295 (490)
....|+..++.+... ..+. ..-..+.+|+|++.+..|+ +-..++.|..+++........+... ...-++++|...
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 456788888765422 2221 2234678999999776655 5556789999998765443333222 223466778778
Q ss_pred ceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEe--CCCeEEEEecCCCceeeeeccccccEEEE
Q 011224 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI 373 (490)
Q Consensus 296 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~v 373 (490)
..+++-...+.|.+.++........+...-.....++++|....|.... ..+.|...++...... .+.........+
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~~~~P~Gl 171 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGL 171 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECSCSSEEEE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECCCCCcceE
Confidence 7888888888999999876543333333445678999998655554444 2467777777654332 222234456788
Q ss_pred EEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEE
Q 011224 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 453 (490)
Q Consensus 374 ~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~ 453 (490)
++++.+. .+..+-...+.|..+|+..... ..+.........|++.. +.++++-...+.|...|..+|+..
T Consensus 172 alD~~~~--------~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 172 TIDYAKR--------RLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp EEETTTT--------EEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEccccC--------EEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 8888653 2344445667899998864332 22222233456787765 445555556788999997777533
No 300
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.57 E-value=0.054 Score=50.90 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=45.0
Q ss_pred CCEEEEEECC-------CCCEEEEEeCCCcEEEEEcCCCeEEEE--E-ec-CCCEEEEEECCCCCEEEEEE-CCCcEE
Q 011224 419 EPVYSLAFSP-------TGEYLASGSLDKSMHIWSLKEGKIVKT--Y-TG-NGGIFEVCWNKEGDKIAACF-ANHTVC 484 (490)
Q Consensus 419 ~~v~~l~~sp-------dg~~l~s~s~dg~i~iw~~~~~~~~~~--~-~~-~~~v~~~~~~~~g~~la~~~-~d~~v~ 484 (490)
.....++|.+ +|.++++.-..+.|...++..++.+.. + .. ...+..+++.|||.++++.. .++.|.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence 3567788864 467777776778888888877655433 2 12 34789999999999766543 455543
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.50 E-value=0.00043 Score=71.84 Aligned_cols=215 Identities=10% Similarity=-0.005 Sum_probs=114.1
Q ss_pred CCeEEEEEccCcceeEeeeeeccCeEEEEcc--CCceEEEEcCCCeEEEEEcCC----CcceeEecCCCCCeeEEEEcCC
Q 011224 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNCVKWDPT 336 (490)
Q Consensus 263 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~----~~~~~~~~~h~~~v~~v~~~~~ 336 (490)
.+.|+..++.+..+...+... ..+..+.|. .+..|++-...+.|+.+++.. ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 457888888776544333221 223344443 445556656677888887764 2222222112223557888754
Q ss_pred -CCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC-CCcEEEEeCCCCeEEEEe
Q 011224 337 -GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYSL 414 (490)
Q Consensus 337 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~ 414 (490)
++++++-...+.|.++++........+.........|++.|.+. . ++.+-.. .+.|..+++........+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g-------~-ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHG-------F-MYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSS-------C-CEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCC-------c-EEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 45566656678899999875543322222223345666666543 1 2233222 267777766532211111
Q ss_pred eCCCCCEEEEEECCCCCEE-EEEeCCCcEEEEEcCCCeEEEEEec---CCCEEEEEECCCCCEEEEEECCCcEEEEE
Q 011224 415 NGHREPVYSLAFSPTGEYL-ASGSLDKSMHIWSLKEGKIVKTYTG---NGGIFEVCWNKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 415 ~~h~~~v~~l~~spdg~~l-~s~s~dg~i~iw~~~~~~~~~~~~~---~~~v~~~~~~~~g~~la~~~~d~~v~v~~ 487 (490)
.......+.|+|+|++..| ++-+..+.|.++++........+.. .....++++..+ .++++....+.|.+++
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d 611 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN 611 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence 2222345789999976544 5555678899999864333222221 122455666544 4555556677888876
No 302
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.38 E-value=0.02 Score=52.60 Aligned_cols=188 Identities=11% Similarity=0.154 Sum_probs=112.0
Q ss_pred EEEccC--CceEEEEcCCCeEEEEEcCCCcceeE-ecC----CC--CCeeEEEE---cCCCCEEEEEe------------
Q 011224 289 DVDWRN--NVSFATSSTDNMIYVCKIGENRPIKT-FAG----HQ--GEVNCVKW---DPTGSLLASCS------------ 344 (490)
Q Consensus 289 ~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~-~~~----h~--~~v~~v~~---~~~~~~l~s~~------------ 344 (490)
++.|.. ...+++.-..+.|..|+...+..... +.+ .. ..+.+|.| .|+++++++..
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~ 96 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS 96 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence 345543 33444555789999998865433222 222 11 13579999 68888877543
Q ss_pred -CCCeEEEEecC---CCceeeeec--cc-----------cccEEEEEEcCCCCCCCCCCCcEEEEEEECC-CcEEEEeCC
Q 011224 345 -DDVTAKIWNMK---QDKYVHDLR--EH-----------SKEIYTIRWSPTGSGTNNPNQQLILASASFD-STVKLWDVE 406 (490)
Q Consensus 345 -~dg~i~iwd~~---~~~~~~~~~--~~-----------~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-g~i~iwd~~ 406 (490)
.+..+..||+. +++.+.... .. ......++..++|. ..++++.- +.|...+..
T Consensus 97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn---------aYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN---------SYVAFALGMPAIARVSAD 167 (334)
T ss_dssp SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC---------EEEEEEESSCEEEEECTT
T ss_pred CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC---------EEEeCCCCCCeEEEEeCC
Confidence 26789999998 776654332 11 12467888888886 45667777 777777765
Q ss_pred CCeEE-EEee----CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeE--EEEEe-cC----CCEEE-EEECCCCCE
Q 011224 407 LGKLL-YSLN----GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKI--VKTYT-GN----GGIFE-VCWNKEGDK 473 (490)
Q Consensus 407 ~~~~~-~~~~----~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~--~~~~~-~~----~~v~~-~~~~~~g~~ 473 (490)
..... +-+. ......+.|+++|+|..|++....|.|..+|+.+-.. +..-. +. ..... +.-..+|+.
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v 247 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES 247 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence 33222 1111 1122367899999999888876699999999875332 22110 11 12334 344457776
Q ss_pred -EEEEECCCcEEE
Q 011224 474 -IAACFANHTVCV 485 (490)
Q Consensus 474 -la~~~~d~~v~v 485 (490)
|++...++.+.+
T Consensus 248 llV~~~~~~~~~l 260 (334)
T 2p9w_A 248 VLVGARAPYAISF 260 (334)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEcCCCCEEEE
Confidence 455555654433
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.34 E-value=0.11 Score=48.88 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC---CCEEEEEe
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLATGS 220 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~---~~~l~sg~ 220 (490)
.-.+++|.|+|+++++ ..++.|++++ ++.. ..+.... ...........++|+|+ +..|+.+.
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-----------~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-----------STYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-----------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-----------cEeecce-EeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 4578999999996655 5668898887 3321 0111111 11112345789999998 45554443
Q ss_pred C-C-----CeEEEEECCCc----e--e-EEec-----CCCCCEEEEEecCCCCEEEEE
Q 011224 221 Y-D-----GQARIWSTNGD----L--K-CTLS-----KHKGPIFSLKWNKKGDYLLTG 260 (490)
Q Consensus 221 ~-d-----g~i~iw~~~~~----~--~-~~~~-----~h~~~V~~l~~~~~~~~l~s~ 260 (490)
. . +.|..++..+. . . ..+. .|. ...|+|.|+|..+++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEEC
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEE
Confidence 3 2 56667765532 1 1 1122 122 2579999999765553
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.22 E-value=0.023 Score=53.19 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=90.3
Q ss_pred eeEEEEcCCCCEEEEEe------------CCCeEEEEecCCCc-eeeeec--c-----ccccEEEEEEcCCCCCCCCCCC
Q 011224 328 VNCVKWDPTGSLLASCS------------DDVTAKIWNMKQDK-YVHDLR--E-----HSKEIYTIRWSPTGSGTNNPNQ 387 (490)
Q Consensus 328 v~~v~~~~~~~~l~s~~------------~dg~i~iwd~~~~~-~~~~~~--~-----~~~~i~~v~~~p~g~~~~~~~~ 387 (490)
...+.+.|+|..+++++ .+|.|.++|.++.. ....+. + ..-....+.+.++.. .
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d------g 125 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD------N 125 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT------C
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC------C
Confidence 44666788876666552 68999999987421 112221 1 122445555544311 1
Q ss_pred cEEEEEEE-C--CCcEEEEeCCCC--e--EEEEeeCC-CCCEEEEEECCCCCEEEEEeC-----------------CCcE
Q 011224 388 QLILASAS-F--DSTVKLWDVELG--K--LLYSLNGH-REPVYSLAFSPTGEYLASGSL-----------------DKSM 442 (490)
Q Consensus 388 ~~~l~sgs-~--dg~i~iwd~~~~--~--~~~~~~~h-~~~v~~l~~spdg~~l~s~s~-----------------dg~i 442 (490)
...|+.+. . +.+|.+|++... . .+.++.+. -...+++++.++|.+.++... .|.|
T Consensus 126 ~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 126 TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred cEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 12333332 2 467788776542 2 22334332 245799999999998887651 2445
Q ss_pred EEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEE-ECCCcEEEEEee
Q 011224 443 HIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAAC-FANHTVCVLDFR 489 (490)
Q Consensus 443 ~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~-~~d~~v~v~~~~ 489 (490)
.-++. +++.....+-...+.++|+|||+.|..+ +..+.|.+|++.
T Consensus 206 yr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 206 TYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 55544 4433333444567999999999877665 567889999874
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.16 E-value=0.083 Score=49.43 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=94.1
Q ss_pred CCCeEEEEEccCcc-eeEeeeee-------ccCeEEEEccC---C--ceEEEEcC--CCeEEEEEcCCCcc----eeEec
Q 011224 262 CDKTAIVWDVKTEE-WKQQFEFH-------SGPTLDVDWRN---N--VSFATSST--DNMIYVCKIGENRP----IKTFA 322 (490)
Q Consensus 262 ~D~~v~iwd~~~~~-~~~~~~~~-------~~~~~~~~~~~---~--~~~~~~~~--d~~i~~~~~~~~~~----~~~~~ 322 (490)
.+|.|.++|+.+.. ....+... ......+++.. . ..|+..+. +..+-++++..... +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 68999999987421 11222221 12445555421 2 23444443 45666776654322 23333
Q ss_pred CC-CCCeeEEEEcCCCCEEEEEeC---C------------CeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCC
Q 011224 323 GH-QGEVNCVKWDPTGSLLASCSD---D------------VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPN 386 (490)
Q Consensus 323 ~h-~~~v~~v~~~~~~~~l~s~~~---d------------g~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~ 386 (490)
+. -...+.+++.++|.+.++... | ..=++|.+..++ +..+...-.....++|+|++.
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~------ 233 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-VRVVAEGFDFANGINISPDGK------ 233 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-CEEEEEEESSEEEEEECTTSS------
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe-EEEeecCCcccCcceECCCCC------
Confidence 32 235789999999998877641 1 122344333332 222222234467899999986
Q ss_pred CcEEEEEEECCCcEEEEeCCC-CeE--EEEeeCCCCCEEEEEECC-CCCEEEEEeCC
Q 011224 387 QQLILASASFDSTVKLWDVEL-GKL--LYSLNGHREPVYSLAFSP-TGEYLASGSLD 439 (490)
Q Consensus 387 ~~~~l~sgs~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~sp-dg~~l~s~s~d 439 (490)
.+.++-+..+.|..|++.. ++. ...+. .......+++.+ +|++.+++..+
T Consensus 234 --~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 234 --YVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp --EEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred --EEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 3455556678999999863 332 12232 235567899999 59988877644
No 306
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.09 E-value=0.31 Score=49.53 Aligned_cols=307 Identities=9% Similarity=0.039 Sum_probs=158.4
Q ss_pred cceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 143 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 143 ~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
.....+++.+.+. ++++-...+.|.+.++..... .. +. . ..-.....+++.|.+.+|+....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~---------~~--l~--~----~~l~~P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR---------KV--LF--W----QELDQPRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EE--EE--C----SSCSCCCCEEEETTTTEEEEEEC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE---------EE--EE--e----CCCCCCceEEEecCCCeEEEecc
Confidence 4678999999655 455555778899988754321 01 10 0 11223567888886555554443
Q ss_pred --CCeEEEEECCCceeEEec-CCCCCEEEEEecCCCCEEEEE-eCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCce
Q 011224 222 --DGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297 (490)
Q Consensus 222 --dg~i~iw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (490)
.+.|...+.++.....+. ..-....+|++.+.+..|+.+ +..+.|...|+..................+.+..+..
T Consensus 147 g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~l 226 (619)
T 3s94_A 147 GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDIL 226 (619)
T ss_dssp SSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEE
T ss_pred CCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEE
Confidence 356666677765444332 233456899999977766655 4457788888865443322221122233445445555
Q ss_pred EEEEcCCCeEEEEEcCCCcceeEecC-----------CC--------------CCe--eEEE---------EcC------
Q 011224 298 FATSSTDNMIYVCKIGENRPIKTFAG-----------HQ--------------GEV--NCVK---------WDP------ 335 (490)
Q Consensus 298 ~~~~~~d~~i~~~~~~~~~~~~~~~~-----------h~--------------~~v--~~v~---------~~~------ 335 (490)
+++-...+.|...+..+++....+.. |. +.. .|+. ..|
T Consensus 227 y~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~ 306 (619)
T 3s94_A 227 YWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLL 306 (619)
T ss_dssp EEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBC
T ss_pred EEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheec
Confidence 66666667777777654432221110 10 000 1110 011
Q ss_pred -CC--------CEEEEEeCCCeEEEEecCCCceeee-ec-cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEe
Q 011224 336 -TG--------SLLASCSDDVTAKIWNMKQDKYVHD-LR-EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 404 (490)
Q Consensus 336 -~~--------~~l~s~~~dg~i~iwd~~~~~~~~~-~~-~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd 404 (490)
|+ .+|+.+ ..+.|+..++........ +. ..-..+..++|.+.+. .++.+-...+.|+-++
T Consensus 307 ~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~--------~ly~sD~~~~~I~r~~ 377 (619)
T 3s94_A 307 ENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG--------YIYWTDDEVRAIRRSF 377 (619)
T ss_dssp TTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTT--------EEEEEETTTTEEEEEE
T ss_pred ccCcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCC--------eEEEEeCCCCeEEEEE
Confidence 11 112222 223455555543321110 10 1123456677766432 2344444567777777
Q ss_pred CCCCeEEEEeeCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEcCCCeEEEEEe--cCCCEEEEEECCC-CCEEEE
Q 011224 405 VELGKLLYSLNGHREPVYSLAFSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKE-GDKIAA 476 (490)
Q Consensus 405 ~~~~~~~~~~~~h~~~v~~l~~spdg-~~l~s~s~dg~i~iw~~~~~~~~~~~~--~~~~v~~~~~~~~-g~~la~ 476 (490)
+........+.........|++.+.+ ++..+-+..+.|.+.++.... ..++. .-....+++++|. |.+..+
T Consensus 378 ~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 378 IDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp TTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEE
T ss_pred cCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEe
Confidence 76433222233223456789998754 455555667899999986543 23332 2345789999986 444444
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.97 E-value=0.4 Score=48.76 Aligned_cols=318 Identities=10% Similarity=0.047 Sum_probs=163.0
Q ss_pred cceeEEEECCCCC-EEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeC
Q 011224 143 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 221 (490)
Q Consensus 143 ~~V~~~~~sp~~~-~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~ 221 (490)
.....+|+.+.+. +.++-...+.|.+.++..... .. +. . ..-.....+++.|...+|+....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~---------~~--l~--~----~~l~~P~~iavdp~~G~lY~tD~ 142 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR---------QV--LV--W----KDLDSPRALALDPAEGFMYWTEW 142 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC---------EE--EE--C----SSCCCEEEEEEETTTTEEEEEEC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE---------EE--EE--e----CCCCCcccEEEccCCCeEEEeCC
Confidence 3567899987655 445555667888888753211 01 10 0 11234578999985555555442
Q ss_pred --CCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEE-eCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceE
Q 011224 222 --DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 298 (490)
Q Consensus 222 --dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (490)
.+.|...++++.....+...-....+|++.+.+..|+.+ ...+.|...|+..... ..+.........+....+..+
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly 221 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIY 221 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEE
T ss_pred CCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEE
Confidence 467777777776554444344556899999987766655 4467888888865433 222222222233333333333
Q ss_pred EEEcCCCeEEEEEcCCCcceeE-------------ec-------------------------------------------
Q 011224 299 ATSSTDNMIYVCKIGENRPIKT-------------FA------------------------------------------- 322 (490)
Q Consensus 299 ~~~~~d~~i~~~~~~~~~~~~~-------------~~------------------------------------------- 322 (490)
++-...+.|...+..++..... +.
T Consensus 222 ~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~ 301 (628)
T 4a0p_A 222 WTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN 301 (628)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTS
T ss_pred EecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccC
Confidence 3433344444443222111000 00
Q ss_pred ------------------------C-----------CCCCeeEEEEcCCCCEEE-EEeCCCeEEEEecCCCceeeeecc-
Q 011224 323 ------------------------G-----------HQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVHDLRE- 365 (490)
Q Consensus 323 ------------------------~-----------h~~~v~~v~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~- 365 (490)
. .-..+.+++|.+.+..|. +=...+.|..+++........+..
T Consensus 302 ~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~ 381 (628)
T 4a0p_A 302 RTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSS 381 (628)
T ss_dssp SCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--
T ss_pred CcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcc
Confidence 0 001123344444332222 222233444444332211111111
Q ss_pred -----ccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eCCCCCEEEEEECC-CCCEEEEEeC
Q 011224 366 -----HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NGHREPVYSLAFSP-TGEYLASGSL 438 (490)
Q Consensus 366 -----~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~sp-dg~~l~s~s~ 438 (490)
.......+++.+.+. .+..+-+..+.|.+.++. |+....+ ........+|++.| .|.++.|-..
T Consensus 382 ~~~~~~~~~p~glAvD~~~~--------nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g 452 (628)
T 4a0p_A 382 VPSQNLEIQPYDLSIDIYSR--------YIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ 452 (628)
T ss_dssp ------CCCEEEEEEETTTT--------EEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEE
T ss_pred cccccccCCcceEEeeccCC--------eEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecC
Confidence 112344555555432 345566667788888876 4443333 33345679999999 5555555333
Q ss_pred CC--cEEEEEcCCCeEEEEE-e-cCCCEEEEEECCCCCEEEEE-ECCCcEEEEEe
Q 011224 439 DK--SMHIWSLKEGKIVKTY-T-GNGGIFEVCWNKEGDKIAAC-FANHTVCVLDF 488 (490)
Q Consensus 439 dg--~i~iw~~~~~~~~~~~-~-~~~~v~~~~~~~~g~~la~~-~~d~~v~v~~~ 488 (490)
.. .|...+.. |.....+ . .-...+.++++++++.|..+ +..+.|..+++
T Consensus 453 ~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~ 506 (628)
T 4a0p_A 453 ERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDL 506 (628)
T ss_dssp TTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence 32 56666654 4333333 2 23457899999987766655 44577777765
No 308
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.95 E-value=0.11 Score=49.29 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=74.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce------------eeeecc------ccccEEEEEEcCCCCCCCCCCCc
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY------------VHDLRE------HSKEIYTIRWSPTGSGTNNPNQQ 388 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~------~~~~i~~v~~~p~g~~~~~~~~~ 388 (490)
.|..+..+|+|.+||..+. ..|.|-.+..+.. ...+.- ...+|..+.|+|-+.. .
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~------d 139 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR------D 139 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGG------G
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCC------C
Confidence 5778999999999988864 5788877752210 112221 2467999999998752 1
Q ss_pred EEEEEEECCCcEEEEeCCCC--eEE--------EEeeCCCCCEEEEEECCCCCEEEEEe--CCCcEEEE
Q 011224 389 LILASASFDSTVKLWDVELG--KLL--------YSLNGHREPVYSLAFSPTGEYLASGS--LDKSMHIW 445 (490)
Q Consensus 389 ~~l~sgs~dg~i~iwd~~~~--~~~--------~~~~~h~~~v~~l~~spdg~~l~s~s--~dg~i~iw 445 (490)
..|++-..|+.||+||+... ++. +.+......|.+++|++++-.|...+ ..|.|+-.
T Consensus 140 s~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 140 SCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 25677789999999999752 122 11222335689999999886555544 77777643
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.65 E-value=0.092 Score=47.86 Aligned_cols=209 Identities=12% Similarity=0.121 Sum_probs=100.8
Q ss_pred CeEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEcCC-----CeEEEEEcCCCc---cee--EecCCCCCeeEEE
Q 011224 264 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENR---PIK--TFAGHQGEVNCVK 332 (490)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~---~~~--~~~~h~~~v~~v~ 332 (490)
..+.+||+.+.+|...-...... -......++..++.++.+ ..+++++..+.. -.. .+........++.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 36788888888765532111110 111222345556665533 457888876654 211 1111111122222
Q ss_pred EcCCCCEEEEEeCCC-----eEEEEecCCCceee--eeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----CcE
Q 011224 333 WDPTGSLLASCSDDV-----TAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STV 400 (490)
Q Consensus 333 ~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~i 400 (490)
+ ++++++.|+.++ .+.+||..+.+... .+.........+.+ ++ . +++.|+.+ ..+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--------~-iyv~GG~~~~~~~~~~ 177 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG--------V-IYCLGGYDGLNILNSV 177 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT--------E-EEEECCBCSSCBCCCE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC--------E-EEEECCCCCCcccceE
Confidence 2 677777777543 57888887665432 11111111111111 22 2 44455543 458
Q ss_pred EEEeCCCCeEEEE--eeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEE--ecCC-CEEEEEECCC
Q 011224 401 KLWDVELGKLLYS--LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTY--TGNG-GIFEVCWNKE 470 (490)
Q Consensus 401 ~iwd~~~~~~~~~--~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~~~~~~--~~~~-~v~~~~~~~~ 470 (490)
.+||+.+.+=... +.........+.+ ++++++.|+.+ ..|.+||+.+.+-...- .... ....+.+ +
T Consensus 178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 253 (301)
T 2vpj_A 178 EKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--R 253 (301)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--T
T ss_pred EEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--C
Confidence 8888876543211 1111111222333 56677777764 46899999876533221 1111 1122222 6
Q ss_pred CCEEEEEECC-----CcEEEEEee
Q 011224 471 GDKIAACFAN-----HTVCVLDFR 489 (490)
Q Consensus 471 g~~la~~~~d-----~~v~v~~~~ 489 (490)
+++++.|+.+ ..|.+||.+
T Consensus 254 ~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 254 GRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp TEEEEECCBCSSSBEEEEEEEETT
T ss_pred CEEEEEcCcCCCcccccEEEEcCC
Confidence 6677777654 346777753
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.63 E-value=0.14 Score=46.72 Aligned_cols=223 Identities=11% Similarity=0.116 Sum_probs=107.8
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCceeEEecCC---CCCEEEEEecCCCCEEEEEeCC-----CeEEEEEccCcc--
Q 011224 212 EGTLLATGS-YD-----GQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEE-- 275 (490)
Q Consensus 212 ~~~~l~sg~-~d-----g~i~iw~~~~~~~~~~~~h---~~~V~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~-- 275 (490)
++.+++.|+ .+ ..+.++|.....-..+..- ......+. .++..++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 345566666 32 3677788765433222211 11111122 245566667654 468999998887
Q ss_pred -eeEeeeeeccC-eEEEEccCCceEEEEcCC-----CeEEEEEcCCCcce--eEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 011224 276 -WKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD 346 (490)
Q Consensus 276 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~~~d 346 (490)
|...-...... -..+...++..++.++.+ ..+.+++..+..-. ..+......-.++.+ ++++++.|+.+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 76542211110 111122245555655432 35777776654321 111111111122222 67777777765
Q ss_pred -----CeEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----CcEEEEeCCCCeEEEE-
Q 011224 347 -----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLYS- 413 (490)
Q Consensus 347 -----g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~- 413 (490)
..+.+||+.+...... +.........+.+ ++ .+++.|+.+ ..+.+||+.+.+-...
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 238 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND---------HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT 238 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT---------EEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC---------EEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence 3578888877654321 1111111111221 11 245556543 4688999887643221
Q ss_pred -eeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCe
Q 011224 414 -LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 451 (490)
Q Consensus 414 -~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~ 451 (490)
+.........+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 239 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 239 SMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2111111222333 56677777765 357788887654
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.52 E-value=0.32 Score=47.33 Aligned_cols=110 Identities=10% Similarity=0.124 Sum_probs=61.3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeeecc------ccccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 325 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 325 ~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~------~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
-....+++|.|+|+++++-...+.|++++...+.. +..+.. .......|+|+|+-.. +..+|++....
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~----~g~lYv~~s~~ 101 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN----NPYIYISGTFK 101 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT----SCEEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCc----CCEEEEEEecc
Confidence 34567999999999887765545788887654432 222211 2345678999995210 11234433220
Q ss_pred -----------CCcEEEEeCCCC-------eEEEE-eeC-CCCCEEEEEECCCCCEEEEEeC
Q 011224 397 -----------DSTVKLWDVELG-------KLLYS-LNG-HREPVYSLAFSPTGEYLASGSL 438 (490)
Q Consensus 397 -----------dg~i~iwd~~~~-------~~~~~-~~~-h~~~v~~l~~spdg~~l~s~s~ 438 (490)
...|.-|++..+ +.+.. +.. .......|+|.|||.+.++.+.
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 123444443221 22222 221 1124689999999988777553
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.51 E-value=0.55 Score=43.98 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=56.3
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCC---CCEEEEE
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLATG 219 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~---~~~l~sg 219 (490)
..-.+++|.|+|+++++ ..++.|++++ .++. ..+..+. ...........|+|+|+ +..|+.+
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~------------~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK------------KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE------------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc------------eEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 34678999999986555 5568888886 2221 0111111 01111245789999997 4444443
Q ss_pred eC----C----CeEEEEECCCc------eeE---Eec---CCCCCEEEEEecCCCCEEEEE
Q 011224 220 SY----D----GQARIWSTNGD------LKC---TLS---KHKGPIFSLKWNKKGDYLLTG 260 (490)
Q Consensus 220 ~~----d----g~i~iw~~~~~------~~~---~~~---~h~~~V~~l~~~~~~~~l~s~ 260 (490)
.. + +.|..|+..+. ... .+. .|. ...|+|.|+|..+++-
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEEC
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEE
Confidence 32 2 45666665432 111 122 233 3568999999766654
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.49 E-value=0.49 Score=43.19 Aligned_cols=225 Identities=12% Similarity=0.162 Sum_probs=134.4
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC-CcceeEecCCC--
Q 011224 249 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQ-- 325 (490)
Q Consensus 249 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~-- 325 (490)
-.+|..+.++.=+ .+++.++|++++.....+... .++.=-.|.+...++.-+ +..|+.|++.. ..|++.|..|.
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L 149 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 149 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGG
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhc
Confidence 3578777666554 688999999999888777664 355556676665554333 45799999864 57888887764
Q ss_pred --CCeeEEEEcCCCCEEEEEeC-------CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 326 --GEVNCVKWDPTGSLLASCSD-------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 326 --~~v~~v~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
..|..-..+++.++++..+- .|.+.+|....+ .-+.+.+|......+. .+|. +....+++-+..
T Consensus 150 ~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~--~~g~----~~~~~lf~fa~r 222 (365)
T 2xzh_A 150 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK--MEGN----AEESTLFCFAVR 222 (365)
T ss_dssp TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEEC--CTTC----SSCEEEEEEEEE
T ss_pred ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEe--cCCC----CCCceEEEEEEe
Confidence 35677778899998765442 367788887644 3344556654433332 2332 111223333332
Q ss_pred ---CCcEEEEeCCCC---eEE-----EEe--e--CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe-cCC
Q 011224 397 ---DSTVKLWDVELG---KLL-----YSL--N--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-GNG 460 (490)
Q Consensus 397 ---dg~i~iwd~~~~---~~~-----~~~--~--~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~~~ 460 (490)
.+.++|.++... ... ..+ . .-.+.--++..|+--..+..-+.-|.|++||+.+|.++..-. ...
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d 302 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE 302 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred cCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCC
Confidence 157888887432 111 111 0 112334556666666677777899999999999999875543 233
Q ss_pred CEEEEEECCCCCEEEEEECCCcE
Q 011224 461 GIFEVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 461 ~v~~~~~~~~g~~la~~~~d~~v 483 (490)
.|...+-+....-++.--..|.|
T Consensus 303 ~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 303 TIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp CEEEEEEEGGGTEEEEEETTCEE
T ss_pred ceEEecccCCCCcEEEEcCCCEE
Confidence 45444444433333333345544
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.43 E-value=0.32 Score=45.27 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=84.9
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeee----ccccccEEEEEEcCCCCCCCCCCCcEEEEEE
Q 011224 321 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILASA 394 (490)
Q Consensus 321 ~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sg 394 (490)
+...-.....++|.|+|.++++-...|.|++++...+.. +..+ .........++++|+-.. +..+|+.-.
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~----~g~lYv~yt 102 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYAS----DHMVYAYFT 102 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHH----HCEEEEEEE
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEecccccc----CCEEEEEEe
Confidence 333345678999999999888776689999998655443 2111 122456788999985110 011233211
Q ss_pred -ECCCcEEEEeCCC----------CeEEEE-eeC-CCCCEEEEEECCCCCEEEEEeC-------------CCcEEEEEcC
Q 011224 395 -SFDSTVKLWDVEL----------GKLLYS-LNG-HREPVYSLAFSPTGEYLASGSL-------------DKSMHIWSLK 448 (490)
Q Consensus 395 -s~dg~i~iwd~~~----------~~~~~~-~~~-h~~~v~~l~~spdg~~l~s~s~-------------dg~i~iw~~~ 448 (490)
..++.|.-|.+.. .+.+.. +.. ....-..|+|.|||.+.++.+. -|.|.-.+..
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 2334444454433 122322 321 1112467999999988777543 2444444443
Q ss_pred CCeE--------EEEE-ecCCCEEEEEECCCCCEEEEE
Q 011224 449 EGKI--------VKTY-TGNGGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 449 ~~~~--------~~~~-~~~~~v~~~~~~~~g~~la~~ 477 (490)
|+. ...+ .+......++|+|+|.+.++=
T Consensus 183 -G~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 183 -GEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp -SSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred -CCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence 221 0112 244456789999998876654
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.38 E-value=0.37 Score=43.85 Aligned_cols=221 Identities=9% Similarity=0.082 Sum_probs=107.0
Q ss_pred CEEEEEeCC--CeEEEEECCCceeEEecC---CCCCEEEEEecCCCCEEEEEeCC----CeEEEEEccCcceeEeeeeec
Q 011224 214 TLLATGSYD--GQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHS 284 (490)
Q Consensus 214 ~~l~sg~~d--g~i~iw~~~~~~~~~~~~---h~~~V~~l~~~~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~~~~~ 284 (490)
.+++.|+.+ ..+.+||.....-..+.. ....-..+. -++..++.|+.+ ..+.+||+.+..|...-....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 355566653 567788876543322211 111111222 245566667654 678899999988765432211
Q ss_pred cC-eEEEEccCCceEEEEcCC------CeEEEEEcCCCcceeE--ecCCCCCeeEEEEcCCCCEEEEEeC---------C
Q 011224 285 GP-TLDVDWRNNVSFATSSTD------NMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSD---------D 346 (490)
Q Consensus 285 ~~-~~~~~~~~~~~~~~~~~d------~~i~~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~~~---------d 346 (490)
.. -......++..++.++.+ ..+.+++..+..-... +......-.++.+ ++++++.|+. -
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence 11 011222345556666543 4577777766532111 1111111122222 6677777764 2
Q ss_pred CeEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----CcEEEEeCCCCeE--EEEeeCC
Q 011224 347 VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKL--LYSLNGH 417 (490)
Q Consensus 347 g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~--~~~~~~h 417 (490)
..+.+||..+...... +.........+.+ ++ . +++.|+.+ ..+.+||+.+.+= +..+...
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~--------~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 237 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KD--------K-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT--------E-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CC--------E-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence 3478888877644321 1111011111111 22 2 44445433 3578888876542 1112211
Q ss_pred CCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCe
Q 011224 418 REPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 451 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~ 451 (490)
......+.+ ++.+++.|+.+ ..|.+||+.+.+
T Consensus 238 r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 238 GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 122233333 66777888754 468889987754
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.34 E-value=0.22 Score=45.27 Aligned_cols=223 Identities=15% Similarity=0.169 Sum_probs=104.2
Q ss_pred CCEEEEEeCC----CeEEEEECCCceeEEecCCCCCE--EEEEecCCCCEEEEEeCC-----CeEEEEEccCcceeEeee
Q 011224 213 GTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQQFE 281 (490)
Q Consensus 213 ~~~l~sg~~d----g~i~iw~~~~~~~~~~~~h~~~V--~~l~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~ 281 (490)
+.+++.|+.+ ..+.++|.....-..+.....+. .++... ++..++.|+.+ ..+.+||+.+.+|...-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 3455555543 35677776654332221111110 111112 45566666654 358899999888765432
Q ss_pred eeccC-eEEEEccCCceEEEEcCCC-----eEEEEEcCCCccee--EecCCCCCeeEEEEcCCCCEEEEEeCC-------
Q 011224 282 FHSGP-TLDVDWRNNVSFATSSTDN-----MIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDD------- 346 (490)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~~~d~-----~i~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~d------- 346 (490)
..... -......++..++.++.++ .+.+++..+..-.. .+........++.+ ++++++.|+.+
T Consensus 95 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEEC
T ss_pred CCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccc
Confidence 21110 1112222455555555332 46667765543211 11111111122222 56777777643
Q ss_pred CeEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----CcEEEEeCCCCeEEE--EeeCC
Q 011224 347 VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--SLNGH 417 (490)
Q Consensus 347 g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~--~~~~h 417 (490)
..+.+||+.+...... +.........+.+ ++ .+++.|+.+ ..+.+||+.+.+=.. .+...
T Consensus 173 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 241 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN---------LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC 241 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT---------EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred cEEEEEeCCCCcEEECCCCccccccccEEEE--CC---------EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc
Confidence 3478888877654321 1111111111111 22 245556544 368889987654221 11111
Q ss_pred CCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCe
Q 011224 418 REPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK 451 (490)
Q Consensus 418 ~~~v~~l~~spdg~~l~s~s~dg-----~i~iw~~~~~~ 451 (490)
......+.+ ++++++.|+.++ .|.+||+.+.+
T Consensus 242 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 242 RRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred cccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 111122222 567777777653 48888887654
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.23 E-value=0.58 Score=42.81 Aligned_cols=140 Identities=10% Similarity=0.068 Sum_probs=67.6
Q ss_pred EEEEEeCCCeEEEEECCCceeE--EecCC-CCCEEEEEecCCCCEEEEEeC----C-------CeEEEEEccCcceeEee
Q 011224 215 LLATGSYDGQARIWSTNGDLKC--TLSKH-KGPIFSLKWNKKGDYLLTGSC----D-------KTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~~--~~~~h-~~~V~~l~~~~~~~~l~s~s~----D-------~~v~iwd~~~~~~~~~~ 280 (490)
+++.|+ ..+.+||.....-. .+... ...-.++. ..++..++.|+. + ..+.+||+.+.+|...-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLV-TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEE-CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEE-EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344555 57888887654322 11111 11122233 345666677763 1 12778899988875432
Q ss_pred eeeccC-eEEEEccCCceEEEEcCC--------CeEEEEEcCCCcce--eEecCCCCCeeEEEEcCCCCEEEEEeC-C--
Q 011224 281 EFHSGP-TLDVDWRNNVSFATSSTD--------NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSD-D-- 346 (490)
Q Consensus 281 ~~~~~~-~~~~~~~~~~~~~~~~~d--------~~i~~~~~~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~~~-d-- 346 (490)
...... -..+...++..++.++.+ ..+.+++..+..-. ..+......-.++. .++++++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence 111100 011222345555555521 35777777654311 11111111111222 35677777776 2
Q ss_pred ---CeEEEEecCCCce
Q 011224 347 ---VTAKIWNMKQDKY 359 (490)
Q Consensus 347 ---g~i~iwd~~~~~~ 359 (490)
..+.+||..+...
T Consensus 162 ~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEW 177 (315)
T ss_dssp CBCCCEEEEETTTTEE
T ss_pred cccceEEEEeCCCCeE
Confidence 3588888877643
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.20 E-value=0.26 Score=44.84 Aligned_cols=211 Identities=15% Similarity=0.158 Sum_probs=98.0
Q ss_pred CeEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEcCC-----CeEEEEEcCCCccee--EecCCCCCeeEEEEcC
Q 011224 264 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIK--TFAGHQGEVNCVKWDP 335 (490)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~~--~~~~h~~~v~~v~~~~ 335 (490)
..+.+||+.+..|...-...... -..+...++..++.++.+ ..+.+++..+..-.. .+........++.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence 35788888887765532111110 011222345556655533 346777766543211 11111111122222
Q ss_pred CCCEEEEEeCCC-----eEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-------CcEE
Q 011224 336 TGSLLASCSDDV-----TAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-------STVK 401 (490)
Q Consensus 336 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-------g~i~ 401 (490)
++++++.|+.++ .+.+||+.+.+.... +.........+.+ ++ . +++.|+.+ ..+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--------~-iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG--------L-LYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT--------E-EEEECCEETTTTEECCCEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC--------E-EEEEeCCCCCCCccccEEE
Confidence 577777777653 477888776654321 1111111111111 11 2 33444432 3578
Q ss_pred EEeCCCCeEEE--EeeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeEEEEEec-CCCEEEEEECCCCCE
Q 011224 402 LWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDK 473 (490)
Q Consensus 402 iwd~~~~~~~~--~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~~~~~~~~-~~~v~~~~~~~~g~~ 473 (490)
+||+.+.+=.. .+.........+.+ ++++++.||.+ ..+.+||+.+.+-...-.. .......+..-++++
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i 254 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLL 254 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred EEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEE
Confidence 88887654221 12211111222333 56777777764 3689999887653222111 111111111226667
Q ss_pred EEEEECCC-----cEEEEEee
Q 011224 474 IAACFANH-----TVCVLDFR 489 (490)
Q Consensus 474 la~~~~d~-----~v~v~~~~ 489 (490)
++.|+.++ .|.+||..
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEECCBCSSSBCCCEEEEETT
T ss_pred EEECCcCCCcccccEEEEcCC
Confidence 77776553 47888753
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.15 E-value=0.86 Score=42.58 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=35.2
Q ss_pred CeeEEEEcC-------CCCEEEEEeCCCeEEEEecCCCceeee--e-ccccccEEEEEEcCCCC
Q 011224 327 EVNCVKWDP-------TGSLLASCSDDVTAKIWNMKQDKYVHD--L-REHSKEIYTIRWSPTGS 380 (490)
Q Consensus 327 ~v~~v~~~~-------~~~~l~s~~~dg~i~iwd~~~~~~~~~--~-~~~~~~i~~v~~~p~g~ 380 (490)
....++|.. +|.++++....+.|...++..++.+.. + ......+..+++.|+|.
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 456777753 467777777778888777765544322 2 12234678888888885
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.02 E-value=0.35 Score=44.00 Aligned_cols=217 Identities=6% Similarity=0.016 Sum_probs=104.1
Q ss_pred EEEEEeC--CCeEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEcCC----CeEEEEEcCCCccee--EecCCCC
Q 011224 256 YLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTD----NMIYVCKIGENRPIK--TFAGHQG 326 (490)
Q Consensus 256 ~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d----~~i~~~~~~~~~~~~--~~~~h~~ 326 (490)
.++.|+. ...+.+||+.+.+|...-...... -..+...++..++.++.+ ..+.+++..+..-.. .+.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 3445554 357889999988876532211110 011222345556666543 567777776653211 1111111
Q ss_pred CeeEEEEcCCCCEEEEEeCC------CeEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC--
Q 011224 327 EVNCVKWDPTGSLLASCSDD------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF-- 396 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~-- 396 (490)
...++.+ ++++++.|+.+ ..+.+||..+...... +.........+.+ ++ . +++.|+.
T Consensus 94 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~--------~-iyv~GG~~~ 160 (306)
T 3ii7_A 94 SLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG--------L-IYVCGGSLG 160 (306)
T ss_dssp SCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT--------E-EEEECCEES
T ss_pred ceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC--------E-EEEECCCCC
Confidence 1122222 67777788765 3588889877654321 1111011111111 22 2 3334432
Q ss_pred -------CCcEEEEeCCCCeEEE--EeeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeEEEE--EecC-
Q 011224 397 -------DSTVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKT--YTGN- 459 (490)
Q Consensus 397 -------dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~~~~~--~~~~- 459 (490)
-..+.+||+.+.+=.. .+......-..+.+ ++++++.||.+ ..|.+||+.+.+-... +...
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 238 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc
Confidence 3457888887764221 11111111122233 56677777654 4688999887642221 1111
Q ss_pred CCEEEEEECCCCCEEEEEECC-----CcEEEEEee
Q 011224 460 GGIFEVCWNKEGDKIAACFAN-----HTVCVLDFR 489 (490)
Q Consensus 460 ~~v~~~~~~~~g~~la~~~~d-----~~v~v~~~~ 489 (490)
.....+.+ ++++++.|+.+ ..+.+||..
T Consensus 239 ~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 239 VTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp SCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred cceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 11122223 66677777644 457777753
No 321
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.11 Score=48.28 Aligned_cols=193 Identities=12% Similarity=0.028 Sum_probs=102.3
Q ss_pred CEEEEEeCCCeEEEEEccCcceeEeeeee-ccCeEEEEcc----CCceEEEE-cCCCeEEEEEcCCCcceeEecC----C
Q 011224 255 DYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SGPTLDVDWR----NNVSFATS-STDNMIYVCKIGENRPIKTFAG----H 324 (490)
Q Consensus 255 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~-~~d~~i~~~~~~~~~~~~~~~~----h 324 (490)
..++.++.||.|.-.|..+++..-.+... ..++...... +...++.. ..||.++.++..++.....+.- .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46889999999999999999877666544 1233322111 12334443 5899999988776543322210 1
Q ss_pred CCCeeE---EEE-c----CCCCEEEEEeCCCeEEEEecCCCceeeeeccccc--c-----EEEEEEcCCCCCCCCCCCcE
Q 011224 325 QGEVNC---VKW-D----PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--E-----IYTIRWSPTGSGTNNPNQQL 389 (490)
Q Consensus 325 ~~~v~~---v~~-~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~-----i~~v~~~p~g~~~~~~~~~~ 389 (490)
..++.. ..+ . ..+..+++|+.+|++.-.|+.+|+.+..+..... . ..|.....-. ......
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~----~d~~~~ 166 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK----LQECEN 166 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------------------CC
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc----cccCCC
Confidence 112211 000 0 1355788999999999999999999887754321 0 0011100000 000001
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEee-----CCCCC--E-EEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 390 ILASASFDSTVKLWDVELGKLLYSLN-----GHREP--V-YSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 390 ~l~sgs~dg~i~iwd~~~~~~~~~~~-----~h~~~--v-~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
.|+.|..+..+.+.+ ++|+ ++.+. ..... + ..-.++.|+.++ .++.||.|.-+|..+|+.+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~-~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCI-APFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCE-EEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEE-EECCCCEEEEEECCCCcEEE
Confidence 355566666666655 3443 22211 11000 0 000112346664 46889999999988888765
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.96 E-value=1.2 Score=42.46 Aligned_cols=226 Identities=12% Similarity=0.160 Sum_probs=137.8
Q ss_pred EEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC-CcceeEecCCC-
Q 011224 248 LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQ- 325 (490)
Q Consensus 248 l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h~- 325 (490)
.-.||..+.++.=+ ..++.|+|+++......+.... ++.=-.|.+...++.. ++..|+.|++.. ..|++.|.-|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~ 147 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSS 147 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEE-CSSEEEEEESSSSCCCEEEEECCGG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEE-cCCeeEEecccCCCCchhheecchh
Confidence 34578777666544 6899999999988877776644 3444556555444332 356899999864 56888887764
Q ss_pred ---CCeeEEEEcCCCCEEEEEeC-------CCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEE
Q 011224 326 ---GEVNCVKWDPTGSLLASCSD-------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASAS 395 (490)
Q Consensus 326 ---~~v~~v~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs 395 (490)
..|..-..++++++++..+- .|.+.+|....+ .-+.+.+|......+.. +|. +....+++-+.
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~--~g~----~~~~~lf~fa~ 220 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKM--EGN----AEESTLFCFAV 220 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEEC--TTC----SSEEEEEEEEE
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEec--CCC----CCCceEEEEEE
Confidence 35777778899998764432 467888987644 33455666555444432 221 11122444444
Q ss_pred CC---CcEEEEeCCCC---e-----EEEEe----eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec-C
Q 011224 396 FD---STVKLWDVELG---K-----LLYSL----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-N 459 (490)
Q Consensus 396 ~d---g~i~iwd~~~~---~-----~~~~~----~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~-~ 459 (490)
.. +.++|.++... . ....+ ..-.+.--++..|+.-..+..-+.-|.|++||+.+|.++..-.- .
T Consensus 221 r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~ 300 (494)
T 1bpo_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG 300 (494)
T ss_dssp CSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred ecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC
Confidence 43 67888887532 1 11111 11123345677777777777888999999999999998755432 3
Q ss_pred CCEEEEEECCCCCEEEEEECCCcE
Q 011224 460 GGIFEVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 460 ~~v~~~~~~~~g~~la~~~~d~~v 483 (490)
..|+..+-+....-++.--..|.|
T Consensus 301 ~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 301 ETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp SCEEEEEEETTTTEEEEEETTCEE
T ss_pred CceEEecccCCCCcEEEEccCceE
Confidence 345544444444444444455544
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.91 E-value=2.6 Score=46.10 Aligned_cols=304 Identities=13% Similarity=0.106 Sum_probs=147.9
Q ss_pred CCCCEEEEEECCCcEEEEecCCCCC-CCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011224 152 PAGSLLASGSGDSTARIWTIADGTS-NGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 230 (490)
Q Consensus 152 p~~~~l~sgs~D~~i~~Wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~ 230 (490)
.++..++-+..+|.+.+-.+..... ... ..+....+..+. ....-.++++-.+| +|+.|+..|.-.+|..
T Consensus 284 ~~~~~~LL~~~~G~l~~l~l~~d~~~~~~---~~V~~l~i~~~~-----~~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~ 354 (1158)
T 3ei3_A 284 PNGSRYLLGDMEGRLFMLLLEKEEQMDGT---VTLKDLRVELLG-----ETSIAECLTYLDNG-VVFVGSRLGDSQLVKL 354 (1158)
T ss_dssp TTSSEEEEEETTCEEEEEEEEEEC--------CEEEEEEEEEEE-----ECSCCSEEEECSTT-EEEEECSSSCEEEEEE
T ss_pred cCCCEEEEEeCCCCEEEEEEEEcCCccCc---eeEEEEEEEEcC-----CccCccEEEEECCC-EEEEEEecCCcEEEEE
Confidence 3556677777889887665532100 000 001111111111 11223567766655 7888898888888875
Q ss_pred CCc---------eeEEecCCCCCEEEEEecCC----CCEEEEEeC---CCeEEEEEccCcceeE---eeeee-ccCeEEE
Q 011224 231 NGD---------LKCTLSKHKGPIFSLKWNKK----GDYLLTGSC---DKTAIVWDVKTEEWKQ---QFEFH-SGPTLDV 290 (490)
Q Consensus 231 ~~~---------~~~~~~~h~~~V~~l~~~~~----~~~l~s~s~---D~~v~iwd~~~~~~~~---~~~~~-~~~~~~~ 290 (490)
... ....+ ..-+||..++.... ...|++++. +|++++.- .+--.. .+... ...+..+
T Consensus 355 ~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr--~Gi~~~~~~~~~l~gv~~iWtl 431 (1158)
T 3ei3_A 355 NVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIR--NGIGIHEHASIDLPGIKGLWPL 431 (1158)
T ss_dssp CSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEE--ESBCEEEEEEECCCSCCEEEEE
T ss_pred ecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEe--cCCCEEEEEeecCCCccEEEEE
Confidence 421 11222 34478888876432 246766543 57888763 221111 11111 0111222
Q ss_pred Ecc----CCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC---------CCeEEEEecCCC
Q 011224 291 DWR----NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---------DVTAKIWNMKQD 357 (490)
Q Consensus 291 ~~~----~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---------dg~i~iwd~~~~ 357 (490)
... .+..++.+..+.+ .++.+... .+.... ...|..+.+.|+++.. ...|++.+....
T Consensus 432 ~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~-------~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~ 502 (1158)
T 3ei3_A 432 RSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETE-------LMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPK 502 (1158)
T ss_dssp CCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEEC-------CTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSC
T ss_pred eecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccc-------cccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCC
Confidence 211 1223344433333 33333111 111111 0011122233333321 234566665444
Q ss_pred ceeeeecccc-ccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEE-eeCCCCCEEEEEECCC------
Q 011224 358 KYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPT------ 429 (490)
Q Consensus 358 ~~~~~~~~~~-~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~spd------ 429 (490)
..+..+.... ..|...+.+. . .++.++ .+.|.++.+..++.... -..-...|.|+++.|.
T Consensus 503 ~~~~~w~~p~~~~I~~As~n~----------~-~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~ 570 (1158)
T 3ei3_A 503 ALVSEWKEPQAKNISVASCNS----------S-QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL 570 (1158)
T ss_dssp CEEEEECCTTCCCCCEEEECS----------S-EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred eEEEEEECCCCCEEEEEEeCC----------C-EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence 4444443221 2333333221 1 233334 57888887766543211 1113457999999864
Q ss_pred CCEEEEEeC-CCcEEEEEcCCCeEEEEEec--CCCEEEEEECC--CCCEEEEEECCCcEEEEEe
Q 011224 430 GEYLASGSL-DKSMHIWSLKEGKIVKTYTG--NGGIFEVCWNK--EGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 430 g~~l~s~s~-dg~i~iw~~~~~~~~~~~~~--~~~v~~~~~~~--~g~~la~~~~d~~v~v~~~ 488 (490)
+.++|.|.+ |++|+|+++.+.+.+....- ...+.++++.. ...+|..|..||.+..+.+
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEE
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEE
Confidence 479999997 99999999988666544332 22344444322 2357888999998876654
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.90 E-value=0.33 Score=41.59 Aligned_cols=139 Identities=11% Similarity=0.034 Sum_probs=78.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeecccccc--------EEEEEEcCCCCCCCCCCCcEEEEEEECCC
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE--------IYTIRWSPTGSGTNNPNQQLILASASFDS 398 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~v~~~p~g~~~~~~~~~~~l~sgs~dg 398 (490)
.+..++|+|+|.+.+. .+|.+.-.+..+.... ........ ..++.|.|+|. +.++ .||
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~---------LYav--~dG 107 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGY---------LYAV--SKD 107 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSC---------EEEE--ETT
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCC---------EEEe--CCC
Confidence 5679999999997777 6676655554332111 11111122 25778888884 3333 569
Q ss_pred cEEEEeCCCC-eEE-----EEe-eCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe------EEEEEe-cC-CCEE
Q 011224 399 TVKLWDVELG-KLL-----YSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK------IVKTYT-GN-GGIF 463 (490)
Q Consensus 399 ~i~iwd~~~~-~~~-----~~~-~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~------~~~~~~-~~-~~v~ 463 (490)
.|.-++-.+. ..- ..+ .+--..+..|.|.|+|.+.+.. |+.++-+...++. ....+. .. ....
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr 185 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFK 185 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEE
T ss_pred EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEE
Confidence 9987775321 110 111 1112457999999999987776 7776544333211 111111 11 1244
Q ss_pred EEEECCCCCEEEEEECCCcE
Q 011224 464 EVCWNKEGDKIAACFANHTV 483 (490)
Q Consensus 464 ~~~~~~~g~~la~~~~d~~v 483 (490)
.+.|.|+|.+.++. ++.+
T Consensus 186 ~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 186 FLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp EEEECTTSCEEEEE--TTEE
T ss_pred EEEECCCCcEEEEe--CCeE
Confidence 57799999887776 6644
No 325
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.76 E-value=0.63 Score=41.94 Aligned_cols=220 Identities=13% Similarity=0.030 Sum_probs=110.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCC--ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEee
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 280 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~ 280 (490)
.|..++-.....+++ . ||.|+.|-.+. ++-.. ......|..++.... +.++. . ||.|..|-..........
T Consensus 25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 355555444322233 4 89999997542 11110 111235666665433 23333 4 899999965432111100
Q ss_pred eeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee
Q 011224 281 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 360 (490)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 360 (490)
......+..+..-....++.. ++.|+.|-......+-.-......|..++......++ -. ||.+..|-......+
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTT
T ss_pred cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCC
Confidence 001224555555555555555 8999999765432211111112356666665433222 33 799999976543322
Q ss_pred eeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCC
Q 011224 361 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 361 ~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
..-......|..|+-.... .++. .||.|..|-....-.+..-......|..|+-.....++++ ||
T Consensus 173 g~p~~~~~~v~~i~~G~~h----------s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g 237 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFH----------SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NG 237 (282)
T ss_dssp SCCGGGGSSEEEEEECSSE----------EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TT
T ss_pred CCceecCCCeEEEEecCCE----------EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CC
Confidence 2111123456666654332 3444 4999999975432111110111234677776554333333 89
Q ss_pred cEEEEEcCC
Q 011224 441 SMHIWSLKE 449 (490)
Q Consensus 441 ~i~iw~~~~ 449 (490)
.|..|=...
T Consensus 238 ~v~~wG~n~ 246 (282)
T 3qhy_B 238 KVIAWGSSR 246 (282)
T ss_dssp EEEEESTTC
T ss_pred EEEEecCCC
Confidence 999997654
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.54 E-value=0.6 Score=42.69 Aligned_cols=177 Identities=8% Similarity=0.073 Sum_probs=84.0
Q ss_pred EEEEeCCCeEEEEEccCcceeEeeeeec---cCeEEEEccCCceEEEEcC-----C------CeEEEEEcCCCccee--E
Q 011224 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSST-----D------NMIYVCKIGENRPIK--T 320 (490)
Q Consensus 257 l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----d------~~i~~~~~~~~~~~~--~ 320 (490)
++.|+ ..+.+||+.+.+|.. ..... ..-.++...++..++.++. . ..++.++..+..-.. .
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 44455 579999999998864 21111 1112333345555655552 1 125666765543111 1
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC--------CeEEEEecCCCceee--eeccccccEEEEEEcCCCCCCCCCCCcEE
Q 011224 321 FAGHQGEVNCVKWDPTGSLLASCSDD--------VTAKIWNMKQDKYVH--DLREHSKEIYTIRWSPTGSGTNNPNQQLI 390 (490)
Q Consensus 321 ~~~h~~~v~~v~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~--~~~~~~~~i~~v~~~p~g~~~~~~~~~~~ 390 (490)
+........++.+ ++++++.|+.+ ..+.+||..+.+... .+.........+. .++ . +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~--------~-i 151 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD--------L-V 151 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT--------E-E
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC--------E-E
Confidence 1100111112222 56777777742 357888887764322 1111101111111 121 2 4
Q ss_pred EEEEEC-C-----CcEEEEeCCCCeEE--EEeeCCCCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcCCCe
Q 011224 391 LASASF-D-----STVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGSLDK-----SMHIWSLKEGK 451 (490)
Q Consensus 391 l~sgs~-d-----g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~spdg~~l~s~s~dg-----~i~iw~~~~~~ 451 (490)
++.|+. + ..+.+||..+.+=. ..+......-..+.+ ++++++.||.++ .+.+||+.+.+
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 444554 2 35888888765321 111111111122333 567777777654 58889988764
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.41 E-value=2.4 Score=46.69 Aligned_cols=196 Identities=12% Similarity=0.187 Sum_probs=115.5
Q ss_pred EecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCC-CcceeEecCC---
Q 011224 249 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGH--- 324 (490)
Q Consensus 249 ~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~h--- 324 (490)
-.||..+.++.=+ .+++.|+|+.+......+.... +|.=-.|.+...++.. ++..|+.|++.. ..|++.|..|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEE-cCCeEEEeccCCCCccHHHHhcchhc
Confidence 3577776665543 6899999999887776665533 4444566555544433 346799999963 4677777666
Q ss_pred -CCCeeEEEEcCCCCEEEEEe-------CCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC
Q 011224 325 -QGEVNCVKWDPTGSLLASCS-------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 396 (490)
Q Consensus 325 -~~~v~~v~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~ 396 (490)
...|..-..+++.++++..| -.|.+.+|....+. .+.+.+|......+.. +|.. ....+++-+..
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~--~~~~----~~~~l~~f~~~ 221 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKM--EGNA----EESTLFCFAVR 221 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheecc--CCCC----CCceEEEEEEe
Confidence 34566777788999876443 34778888875432 2334455444333322 1111 11113332222
Q ss_pred ---CCcEEEEeCCCC---eEEEEe-------e--CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEE
Q 011224 397 ---DSTVKLWDVELG---KLLYSL-------N--GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454 (490)
Q Consensus 397 ---dg~i~iwd~~~~---~~~~~~-------~--~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~ 454 (490)
.+.++|.++... ...+.. . .-.+.--++..|+.-..+..-+.-|.|++||+.+|..+.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred cCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 267888877432 111110 0 011223445666666667777789999999999998653
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.38 E-value=0.94 Score=41.22 Aligned_cols=225 Identities=13% Similarity=0.126 Sum_probs=106.2
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCceeEEecCCCCC--EEEEEecCCCCEEEEEeC----C-----CeEEEEEccCcc
Q 011224 211 GEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSC----D-----KTAIVWDVKTEE 275 (490)
Q Consensus 211 ~~~~~l~sg~~d----g~i~iw~~~~~~~~~~~~h~~~--V~~l~~~~~~~~l~s~s~----D-----~~v~iwd~~~~~ 275 (490)
-++.+++.|+.+ ..+.++|.....-..+..-..+ -.+++.. ++..++.|+. + ..+.+||+.+..
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 355677777642 3677888765433322111110 0112222 4555666665 2 468899998887
Q ss_pred eeEeeeeeccC-eEEEEccCCceEEEEcCC-----CeEEEEEcCCCccee--EecCCCCCeeEEEEcCCCCEEEEEeCC-
Q 011224 276 WKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDD- 346 (490)
Q Consensus 276 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~d- 346 (490)
|...-...... -..+...++..++.++.+ ..+.+++..+..-.. .+......-.++.+ ++++++.|+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~ 179 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDG 179 (308)
T ss_dssp EEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCC
Confidence 76542211110 011122244555555422 356777766543111 11111111122222 67777777765
Q ss_pred ----CeEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----CcEEEEeCCCCeEEE--E
Q 011224 347 ----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----STVKLWDVELGKLLY--S 413 (490)
Q Consensus 347 ----g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~i~iwd~~~~~~~~--~ 413 (490)
..+.+||+.+...... +.........+.+ ++ .+++.|+.+ ..+.+||+.+.+=.. .
T Consensus 180 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 180 TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN---------CIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT---------EEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred CCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC---------EEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 3578888876644321 1111111111222 22 245555543 458889987654221 1
Q ss_pred eeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCe
Q 011224 414 LNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 451 (490)
Q Consensus 414 ~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~ 451 (490)
+.........+.+ ++++++.|+.+ ..|.+||+.+.+
T Consensus 249 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 249 MKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1111111122222 56777777754 357788877654
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.23 E-value=0.34 Score=45.98 Aligned_cols=124 Identities=12% Similarity=0.126 Sum_probs=77.9
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCC--CCCceeEEEEeeecccccCCCCeEEEEEcCC---CCEEEE
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ--NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLAT 218 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~---~~~l~s 218 (490)
.|..+..||+|++||..+ +..|.|-.+..+....... ..++.... ..+.........+|..+.|+|- +..|++
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~t-y~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFH-YSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEE-EEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeE-EEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 578899999999999885 4678888887543221110 01222111 1111111123578999999994 568999
Q ss_pred EeCCCeEEEEECCCce--eEEec---------CCCCCEEEEEecCCCCEEEEEe--CCCeEEEE
Q 011224 219 GSYDGQARIWSTNGDL--KCTLS---------KHKGPIFSLKWNKKGDYLLTGS--CDKTAIVW 269 (490)
Q Consensus 219 g~~dg~i~iw~~~~~~--~~~~~---------~h~~~V~~l~~~~~~~~l~s~s--~D~~v~iw 269 (490)
-..|+.||+||+.... ...+. .....|.+++|.+++-.|+..+ ..|-|...
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999976411 11222 1225688899998776666644 66777654
No 330
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.69 Score=42.78 Aligned_cols=188 Identities=12% Similarity=0.137 Sum_probs=101.6
Q ss_pred CEEEEEeCCCeEEEEECC-CceeEEecCC-CCCEEEEEec--CCCCEEEEE--eCCCeEEEEEccCcceeEeeeee----
Q 011224 214 TLLATGSYDGQARIWSTN-GDLKCTLSKH-KGPIFSLKWN--KKGDYLLTG--SCDKTAIVWDVKTEEWKQQFEFH---- 283 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~-~~~~~~~~~h-~~~V~~l~~~--~~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~~---- 283 (490)
.+++.++.||.|.-.|.. ++....+... ..++....-. +.+..++.+ +.||.|..++..++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 367888999999999864 5555555433 1233322111 112234433 68999999999888554333211
Q ss_pred ccCeEE-----E-E---ccCCceEEEEcCCCeEEEEEcCCCcceeEecCCC--CC-----eeEEEEc-----CCCCEEEE
Q 011224 284 SGPTLD-----V-D---WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--GE-----VNCVKWD-----PTGSLLAS 342 (490)
Q Consensus 284 ~~~~~~-----~-~---~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~--~~-----v~~v~~~-----~~~~~l~s 342 (490)
..|... + + ...+..+.+++.++.++..+..+++.+..+.... +. ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111111 0 0 0145567788899999999999999888876321 11 1122211 12356777
Q ss_pred EeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCC-------CCCCCCcEEEEEEECCCcEEEEeCCCCeEEE
Q 011224 343 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG-------TNNPNQQLILASASFDSTVKLWDVELGKLLY 412 (490)
Q Consensus 343 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~-------~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~ 412 (490)
|..+..+.+.+ ++++ +-.+. --.|.+.... ....+.. + +.++.||.|.-+|..+|..++
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~-------~s~~~~~~~~~~~~~~~~~s~Dg~-~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVT-------YSTWQQNVLDVPLALQNTFSKDGM-C-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCE-------EEEEECCTTTHHHHTTCSSCSSSC-C-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEe-------cccccccccccccccccccccCCc-E-EEECCCCEEEEEECCCCcEEE
Confidence 77777777666 3342 21111 0112221110 0000111 2 447899999999999999887
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.07 E-value=1.7 Score=39.64 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=64.9
Q ss_pred EEEEEeCCCeEEEEECCCceeEE--ecC-CCCCEEEEEecCCCCEEEEEeC----CC-------eEEEEEccCcceeEee
Q 011224 215 LLATGSYDGQARIWSTNGDLKCT--LSK-HKGPIFSLKWNKKGDYLLTGSC----DK-------TAIVWDVKTEEWKQQF 280 (490)
Q Consensus 215 ~l~sg~~dg~i~iw~~~~~~~~~--~~~-h~~~V~~l~~~~~~~~l~s~s~----D~-------~v~iwd~~~~~~~~~~ 280 (490)
+++.|+. .+.+||.....-.. +.. ....-.+++ ..++..++.|+. ++ .+.+||+.+.+|...-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 37778876543222 111 111122332 345666677763 12 2778899888876532
Q ss_pred eeecc-CeEEEEccCCceEEEEcCC-------CeEEEEEcCCCcceeE--ecCCCCCeeEEEEcCCCCEEEEEeCC----
Q 011224 281 EFHSG-PTLDVDWRNNVSFATSSTD-------NMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDD---- 346 (490)
Q Consensus 281 ~~~~~-~~~~~~~~~~~~~~~~~~d-------~~i~~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~~~d---- 346 (490)
..... .-..+...++..++.++.+ ..+.+++..+..-... +......- +++. .++++++.|+.+
T Consensus 95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSC
T ss_pred CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCC
Confidence 21111 0112222245555555532 2466677655432111 11000011 1222 367777777642
Q ss_pred --CeEEEEecCCCce
Q 011224 347 --VTAKIWNMKQDKY 359 (490)
Q Consensus 347 --g~i~iwd~~~~~~ 359 (490)
..+.+||..+...
T Consensus 173 ~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 173 CTNRVFIYNPKKGDW 187 (318)
T ss_dssp BCCCEEEEETTTTEE
T ss_pred ccceEEEEcCCCCEE
Confidence 3588899877654
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=94.88 E-value=0.72 Score=42.03 Aligned_cols=210 Identities=10% Similarity=0.090 Sum_probs=97.3
Q ss_pred CeEEEEEccCcceeEeeeeeccC-eEEEEccCCceEEEEcC----C-----CeEEEEEcCCCccee--EecCCCCCeeEE
Q 011224 264 KTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSST----D-----NMIYVCKIGENRPIK--TFAGHQGEVNCV 331 (490)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----d-----~~i~~~~~~~~~~~~--~~~~h~~~v~~v 331 (490)
..+.+||+.+.+|...-...... -..+...++..++.++. + +.+++++..+..-.. .+........++
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 118 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG 118 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence 35788888887776532111110 01122234455555543 2 356777765543111 111111112222
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC-----Cc
Q 011224 332 KWDPTGSLLASCSDD-----VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD-----ST 399 (490)
Q Consensus 332 ~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d-----g~ 399 (490)
.+ ++++++.|+.+ ..+.+||..+.+.... +.........+.+ ++ .+++.|+.+ ..
T Consensus 119 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~---------~iyv~GG~~~~~~~~~ 185 (308)
T 1zgk_A 119 VI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR---------LLYAVGGFDGTNRLNS 185 (308)
T ss_dssp EE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT---------EEEEECCBCSSCBCCC
T ss_pred EE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC---------EEEEEeCCCCCCcCce
Confidence 22 67777777644 3577888876654321 1111111111121 22 244455543 45
Q ss_pred EEEEeCCCCeEEE--EeeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCeEEEE--EecCCCEEEEEECCC
Q 011224 400 VKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGKIVKT--YTGNGGIFEVCWNKE 470 (490)
Q Consensus 400 i~iwd~~~~~~~~--~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~~~~~--~~~~~~v~~~~~~~~ 470 (490)
+.+||+.+.+=.. .+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-... +.....-.+++. -+
T Consensus 186 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~ 262 (308)
T 1zgk_A 186 AECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQ 262 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET
T ss_pred EEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-EC
Confidence 7888887654221 11111111223333 56777777764 5699999887643221 111111111111 25
Q ss_pred CCEEEEEECC-----CcEEEEEee
Q 011224 471 GDKIAACFAN-----HTVCVLDFR 489 (490)
Q Consensus 471 g~~la~~~~d-----~~v~v~~~~ 489 (490)
+++++.|+.+ ..|.+||..
T Consensus 263 ~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 263 GRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp TEEEEECCBCSSCBCCEEEEEETT
T ss_pred CEEEEEcCcCCCcccceEEEEcCC
Confidence 6677777644 346777753
No 333
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.79 E-value=1.7 Score=39.73 Aligned_cols=171 Identities=11% Similarity=0.116 Sum_probs=80.1
Q ss_pred eEEEEEccCcceeEeeeeec---cCeEEEEccCCceEEEEcC----CC-------eEEEEEcCCCccee--EecCCCCCe
Q 011224 265 TAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSST----DN-------MIYVCKIGENRPIK--TFAGHQGEV 328 (490)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----d~-------~i~~~~~~~~~~~~--~~~~h~~~v 328 (490)
.+.+||+.+.+|... .... ..-.++...++..++.++. ++ .++.++..+..-.. .+.......
T Consensus 25 ~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 478999999888652 2111 1122333445556666652 11 16666765443111 111111111
Q ss_pred eEEEEcCCCCEEEEEeCC-------CeEEEEecCCCceeee--eccccccEEEEEEcCCCCCCCCCCCcEEEEEEEC---
Q 011224 329 NCVKWDPTGSLLASCSDD-------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGSGTNNPNQQLILASASF--- 396 (490)
Q Consensus 329 ~~v~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~--- 396 (490)
.++.+ ++++++.|+.+ ..+.+||..+.+.... +...... .++.. .++ . +++.|+.
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~--------~-iyv~GG~~~~ 170 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVIS-HNG--------M-IYCLGGKTDD 170 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEE-ETT--------E-EEEECCEESS
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEE-ECC--------E-EEEEcCCCCC
Confidence 12222 56777777754 2477888876654321 1110000 11111 122 2 3344442
Q ss_pred ---CCcEEEEeCCCCeEEE--EeeCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEEcCCCe
Q 011224 397 ---DSTVKLWDVELGKLLY--SLNGHREPVYSLAFSPTGEYLASGSLD-----KSMHIWSLKEGK 451 (490)
Q Consensus 397 ---dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iw~~~~~~ 451 (490)
-..+.+||+.+.+=.. .+.........+.+ ++++++.||.+ ..+.+||+.+.+
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 2358888987764221 11111111122333 56777777654 357788887754
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.64 E-value=1.6 Score=37.44 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=55.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCeEEEEecCCCcee---e--ee--ccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcE
Q 011224 328 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV---H--DL--REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 400 (490)
Q Consensus 328 v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~--~~--~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i 400 (490)
..++.|.|+|.+.++ .||.|.-++-.+...- . +. ..-=..+..|.+.|+|. |.... |+.+
T Consensus 90 F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~----------Lyav~-dg~l 156 (236)
T 1tl2_A 90 FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY----------LYAVH-GQQF 156 (236)
T ss_dssp CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC----------EEEEE-TTEE
T ss_pred ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce----------EEEEe-CCcE
Confidence 467899999998887 5588877765322111 0 00 00114678999999995 44444 8876
Q ss_pred EEEeCCCCe------EEEEee-CCCCCEEEEEECCCCCEEEEEeCCC
Q 011224 401 KLWDVELGK------LLYSLN-GHREPVYSLAFSPTGEYLASGSLDK 440 (490)
Q Consensus 401 ~iwd~~~~~------~~~~~~-~h~~~v~~l~~spdg~~l~s~s~dg 440 (490)
+-+...++. ....+. .....-.-+.|.|+|.+.+.. ++
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g 201 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG 201 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred EecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC
Confidence 443322111 011111 222234457788988877665 55
No 335
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.24 E-value=6 Score=41.10 Aligned_cols=266 Identities=9% Similarity=0.064 Sum_probs=146.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEEecC------CCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCc
Q 011224 201 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274 (490)
Q Consensus 201 ~~~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~------h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~ 274 (490)
...|.++....+|.+.+ |+.. -+..++........+.. ....|.++...+++..|..|+. +-+..+|..++
T Consensus 145 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 145 NNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp CSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 34688888888887665 4444 56677765543322211 1234888887777765555554 45888898776
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecC--------CCCCeeEEEEcCCCCEEEEEeCC
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--------HQGEVNCVKWDPTGSLLASCSDD 346 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--------h~~~v~~v~~~~~~~~l~s~~~d 346 (490)
.+..........+.++....+..+..++. +-+.+++...... ..+.. ....|.++....+|.+- .|+..
T Consensus 222 ~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~ 298 (758)
T 3ott_A 222 QIKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDY 298 (758)
T ss_dssp EEEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESS
T ss_pred eEEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCC
Confidence 65432222233355555444444544444 4567776654432 22211 12458888888877754 45555
Q ss_pred CeEEEEecCCCceeeeec-----cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCe--EEEEeeC---
Q 011224 347 VTAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNG--- 416 (490)
Q Consensus 347 g~i~iwd~~~~~~~~~~~-----~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~--~~~~~~~--- 416 (490)
| +.++.....-...... .....|.++.-..+|. +. .|+.+| +..++..++. ....+..
T Consensus 299 G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~--------lW--iGt~~G-l~~~~~~~~~~~~~~~~~~~~~ 366 (758)
T 3ott_A 299 G-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGF--------YW--FGGANG-LIRFTDPAGERHDAIWYRMGDK 366 (758)
T ss_dssp S-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCC--------EE--EEETTE-EEEESCTTSSCCCCEEECTTCS
T ss_pred c-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCC--------EE--EeeCCc-ceeecccccccceeEEeccCCc
Confidence 6 5444322111000000 1124577777766664 23 345555 5566655421 1111110
Q ss_pred ----CCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe-c------CCCEEEEEECCCCCEEEEEECCCcEEE
Q 011224 417 ----HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT-G------NGGIFEVCWNKEGDKIAACFANHTVCV 485 (490)
Q Consensus 417 ----h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~-~------~~~v~~~~~~~~g~~la~~~~d~~v~v 485 (490)
....|.++.-.++|.+.+ |+ ++-|..|+..+++...... . ...|.++.-.++|++. .|+..+.|.+
T Consensus 367 ~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igT~~~Gl~~ 443 (758)
T 3ott_A 367 TYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLW-ISTCLGGIFV 443 (758)
T ss_dssp SSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEE-EEESSSCEEE
T ss_pred CCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEE-EEECCCceEE
Confidence 123589998888887655 34 4569999998876543221 1 2347888887777644 4555555777
Q ss_pred EE
Q 011224 486 LD 487 (490)
Q Consensus 486 ~~ 487 (490)
+|
T Consensus 444 ~~ 445 (758)
T 3ott_A 444 VD 445 (758)
T ss_dssp EE
T ss_pred Ec
Confidence 76
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.75 E-value=4.3 Score=37.63 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCceeEE---e----cCCCCCEEEEEecCC---CCEEEEE---eCCCeEEEE
Q 011224 203 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCT---L----SKHKGPIFSLKWNKK---GDYLLTG---SCDKTAIVW 269 (490)
Q Consensus 203 ~V~~~~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~---~----~~h~~~V~~l~~~~~---~~~l~s~---s~D~~v~iw 269 (490)
.-..|+|.|+|.++++--..|.|++++..+..... + ....+....|+|+|+ +.+|+.. ..+..|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 46789999999977776558999999765332221 1 123456789999995 4455543 234556666
Q ss_pred EccC
Q 011224 270 DVKT 273 (490)
Q Consensus 270 d~~~ 273 (490)
.+..
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 5544
No 337
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.32 E-value=1.2 Score=41.48 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=19.0
Q ss_pred cEEEEEcCCCe--EEEEEecCCCEEEEEECCCCCEEEEEECC
Q 011224 441 SMHIWSLKEGK--IVKTYTGNGGIFEVCWNKEGDKIAACFAN 480 (490)
Q Consensus 441 ~i~iw~~~~~~--~~~~~~~~~~v~~~~~~~~g~~la~~~~d 480 (490)
.+.+||+.+.+ .+..+... .....+...++++++.|+.+
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEEEC
T ss_pred eEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEeeeC
Confidence 57889987643 33333221 11122233467777777754
No 338
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.31 E-value=6 Score=43.70 Aligned_cols=205 Identities=14% Similarity=0.210 Sum_probs=119.7
Q ss_pred EEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 011224 148 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 227 (490)
Q Consensus 148 ~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg~i~i 227 (490)
.-.+|..+.||--+ ..++.|+++.+....+... -..+|..-.|-....+-+++ +..|.-
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~------------------~~e~VvfWkWis~~~l~lVT--~~aVyH 129 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT------------------MTDDVTFWKWISLNTVALVT--DNAVYH 129 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccc------------------cCCCceEEEecCCCeeEEEc--CCeEEE
Confidence 34677777776654 5789999987644322111 13457777887665544332 358999
Q ss_pred EECCC--ceeEEecCC----CCCEEEEEecCCCCEEEEEe-------CCCeEEEEEccCcceeEeeeeeccCeEEEEcc-
Q 011224 228 WSTNG--DLKCTLSKH----KGPIFSLKWNKKGDYLLTGS-------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR- 293 (490)
Q Consensus 228 w~~~~--~~~~~~~~h----~~~V~~l~~~~~~~~l~s~s-------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~- 293 (490)
|+..+ .+...+..| ...|..-.-+++.++++..| -.|.+.+|....+ ..+.+++|.+....+...
T Consensus 130 W~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~ 208 (1630)
T 1xi4_A 130 WSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEG 208 (1630)
T ss_pred eccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCC
Confidence 99865 333344444 34566667788888876433 3477888876543 334455555443333222
Q ss_pred ---CCceEEEE---cCCCeEEEEEcCCC---c------ceeEecCC---CCCeeEEEEcCCCCEEEEEeCCCeEEEEecC
Q 011224 294 ---NNVSFATS---STDNMIYVCKIGEN---R------PIKTFAGH---QGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355 (490)
Q Consensus 294 ---~~~~~~~~---~~d~~i~~~~~~~~---~------~~~~~~~h---~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~ 355 (490)
+...|+.+ ...+.+++..++.. . .+..+... ..-..++..++.-..+..-+.-|.|.+||+.
T Consensus 209 ~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 209 NAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred CCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 11222222 22367888887543 1 11111111 2233467778888888888999999999999
Q ss_pred CCceeeeeccccccEEEEE
Q 011224 356 QDKYVHDLREHSKEIYTIR 374 (490)
Q Consensus 356 ~~~~~~~~~~~~~~i~~v~ 374 (490)
++.++..-+-...+|...+
T Consensus 289 t~~~i~~~ris~~~iF~~~ 307 (1630)
T 1xi4_A 289 TGTCIYMNRISGETIFVTA 307 (1630)
T ss_pred cchhhhhccccCCceEEec
Confidence 9988765444444444433
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.01 E-value=9.6 Score=39.53 Aligned_cols=312 Identities=11% Similarity=0.091 Sum_probs=165.8
Q ss_pred cceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCC
Q 011224 143 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 222 (490)
Q Consensus 143 ~~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~d 222 (490)
..|.++...++|.+.+ |+..| |..++..++.. ... ............|.++....++..|..|..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~-----------~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKF-----------EGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEE-----------EEE-CCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCce-----------EEe-cCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 4588888888887665 44444 66777544321 000 000000111234888888777765555553
Q ss_pred CeEEEEECCCceeEEec-CCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee-------eccCeEEEEccC
Q 011224 223 GQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRN 294 (490)
Q Consensus 223 g~i~iw~~~~~~~~~~~-~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~ 294 (490)
+-+..++........+. .....|.++...+++...+ |+. +-+.+++..+..+...... ....+.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 45777886654332221 1234578887777776544 444 4578888877654322111 112345554443
Q ss_pred CceEEEEcCCCeEEEEEcCCCcceeEec-------CCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCce--eeeec-
Q 011224 295 NVSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLR- 364 (490)
Q Consensus 295 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~- 364 (490)
...+-.++..| +.+..... ....+. .....|.++.-..+|.+-+ |+.+| +..++..++.. ...+.
T Consensus 289 ~g~lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~ 363 (758)
T 3ott_A 289 EHNIWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRM 363 (758)
T ss_dssp TCCEEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECT
T ss_pred CCCEEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEecc
Confidence 33444444445 43332211 111111 1134688888888887654 44555 55566544211 11111
Q ss_pred ------cccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCCeEEEEe-eC-----CCCCEEEEEECCCCCE
Q 011224 365 ------EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-NG-----HREPVYSLAFSPTGEY 432 (490)
Q Consensus 365 ------~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~-----h~~~v~~l~~spdg~~ 432 (490)
.....|.++.-.+++. +.+ |+ ++-|..||..+++...-. .. ....|.++...++|.+
T Consensus 364 ~~~~~~l~~~~v~~i~~d~~g~--------lWi--gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l 432 (758)
T 3ott_A 364 GDKTYPLSHNRIRHIYEDKEQQ--------LWI--AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQL 432 (758)
T ss_dssp TCSSSCCSCSCEEEEEECTTSC--------EEE--EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEE
T ss_pred CCcCCCCCCCceEEEEECCCCC--------EEE--Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCE
Confidence 1123577777666654 333 44 456889998877643221 11 1245889988888765
Q ss_pred EEEEeCCCcEEEEEcCC------CeEE--EEEec-----CCCEEEEEECCCCCEEEEEECCCcEEEEEe
Q 011224 433 LASGSLDKSMHIWSLKE------GKIV--KTYTG-----NGGIFEVCWNKEGDKIAACFANHTVCVLDF 488 (490)
Q Consensus 433 l~s~s~dg~i~iw~~~~------~~~~--~~~~~-----~~~v~~~~~~~~g~~la~~~~d~~v~v~~~ 488 (490)
.+ |+..+-|.+++..+ +... ..+.. ...|.++.-.++|++-++++..+.|..+|.
T Consensus 433 Wi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~ 500 (758)
T 3ott_A 433 WI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINP 500 (758)
T ss_dssp EE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEET
T ss_pred EE-EECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeC
Confidence 55 55555688888642 1221 22221 124888999999987764433455777764
No 340
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.66 E-value=5.9 Score=36.19 Aligned_cols=232 Identities=12% Similarity=0.162 Sum_probs=121.0
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC-cceeEeeeeecc--
Q 011224 209 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSG-- 285 (490)
Q Consensus 209 ~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~-- 285 (490)
.+|..+.++.-. ..++.|++++.+.+..-.....+|.--+|-.....-+.. +..|.-|++.. ...++.|..|..
T Consensus 74 MnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 74 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEE--SSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEc--CCcEEEEcccCCCCCceeeecchhcc
Confidence 467777777665 678999999876544333345678778886554432222 46899999874 345666666543
Q ss_pred CeEEEEc--cC--CceEEEE--cCC----CeEEEEEcCCCcceeEecCCCCCeeEEEEcCC---CCEEEEEeC---CCeE
Q 011224 286 PTLDVDW--RN--NVSFATS--STD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSD---DVTA 349 (490)
Q Consensus 286 ~~~~~~~--~~--~~~~~~~--~~d----~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~---dg~i 349 (490)
...-+.+ .. ...++.| ..+ |.+.+|..... .-+.+.||.+....+...-+ .++++.+.. .+++
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kL 229 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 229 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEE
Confidence 1222222 22 2222222 122 45566666443 34566777654433322111 123333332 2578
Q ss_pred EEEecCCC-ceeeeeccccccEEEEEEcCCCCCCCCC------CCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCEE
Q 011224 350 KIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNP------NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 422 (490)
Q Consensus 350 ~iwd~~~~-~~~~~~~~~~~~i~~v~~~p~g~~~~~~------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v~ 422 (490)
+|-++... .--. ........+-|.|+.... .| ...-++..-..-|.|.+||+.++.+++.-+-...+|.
T Consensus 230 hIiEi~~~~~~~~---~f~kk~vdi~fppea~~D-FPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 230 HIIEVGTPPTGNQ---PFPKKAVDVFFPPEAQND-FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEECSSCCTTCC---CCCCEEEEECCCTTCTTC-CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEcCCCCCCCC---CcccccceeeCCccccCC-ceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 88887432 0000 111223333343432111 00 0011455566889999999999999987765555555
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 423 SLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 423 ~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
.-+.+....-++.....|.|.--.+.
T Consensus 306 ~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 306 VTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp EEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred EecccCCCCcEEEEcCCCEEEEEEEC
Confidence 44444333334444455554444433
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.40 E-value=3.5 Score=42.50 Aligned_cols=191 Identities=8% Similarity=0.041 Sum_probs=94.2
Q ss_pred CCCCEEEEEeCC----CeEEEEEccCcceeEee-ee-----ecc-CeEEEEcc--CCceEEEEcCC------CeEEEEEc
Q 011224 252 KKGDYLLTGSCD----KTAIVWDVKTEEWKQQF-EF-----HSG-PTLDVDWR--NNVSFATSSTD------NMIYVCKI 312 (490)
Q Consensus 252 ~~~~~l~s~s~D----~~v~iwd~~~~~~~~~~-~~-----~~~-~~~~~~~~--~~~~~~~~~~d------~~i~~~~~ 312 (490)
.++..++.|+.+ ..+.+||+.+..|...- .. ... .-.++... ++..++.++.+ +.+++++.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 345566666643 46889999988876543 20 110 01122222 55566665532 24667776
Q ss_pred CCCccee--EecCCCCCeeEEEEcCCCCEEEEEeCCC--eEEEEecCCCceeeeec-----cccccEEEEEEcCCCCCCC
Q 011224 313 GENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTN 383 (490)
Q Consensus 313 ~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~-----~~~~~i~~v~~~p~g~~~~ 383 (490)
.+..-.. .+..... -.+++...++++++.|+.++ .+.+||..+......-. .......++.+....
T Consensus 476 ~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~---- 550 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS---- 550 (695)
T ss_dssp TTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT----
T ss_pred CCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC----
Confidence 6532111 1111111 11233324788888888655 68899988765432110 000111112332221
Q ss_pred CCCCcEEEEEEEC--C-----CcEEEEeCCCCe--------EEEEee-CCCCCEEEEEECCCCCEEEEEeC--------C
Q 011224 384 NPNQQLILASASF--D-----STVKLWDVELGK--------LLYSLN-GHREPVYSLAFSPTGEYLASGSL--------D 439 (490)
Q Consensus 384 ~~~~~~~l~sgs~--d-----g~i~iwd~~~~~--------~~~~~~-~h~~~v~~l~~spdg~~l~s~s~--------d 439 (490)
+ .+++.|+. + ..+.+||+.+.. .+.... ........+.+ .++++++.||. .
T Consensus 551 ---~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 625 (695)
T 2zwa_A 551 ---K-QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TPRKLLIVGGTSPSGLFDRT 625 (695)
T ss_dssp ---T-EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ETTEEEEECCBCSSCCCCTT
T ss_pred ---C-EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CCCEEEEECCccCCCCCCCC
Confidence 1 24444544 2 358888987665 111211 11111222333 33677777774 3
Q ss_pred CcEEEEEcCCCeE
Q 011224 440 KSMHIWSLKEGKI 452 (490)
Q Consensus 440 g~i~iw~~~~~~~ 452 (490)
..|.+||+.+.+-
T Consensus 626 ~~v~~yd~~t~~W 638 (695)
T 2zwa_A 626 NSIISLDPLSETL 638 (695)
T ss_dssp TSEEEEETTTTEE
T ss_pred CeEEEEECCCCeE
Confidence 4699999987653
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.84 E-value=9.6 Score=36.79 Aligned_cols=103 Identities=10% Similarity=0.157 Sum_probs=57.0
Q ss_pred CCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeee--------eccCeEEEEccC-----CceEEEEcC------
Q 011224 243 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--------HSGPTLDVDWRN-----NVSFATSST------ 303 (490)
Q Consensus 243 ~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~~------ 303 (490)
...++|+|.|+|..+++-...+.|++++..++........ .....+.+.+.+ ...+++.+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3457999999998666654445788887655543221111 123345677663 334444332
Q ss_pred ------CCeEEEEEcCCC-------ccee-Eec-CCCCCeeEEEEcCCCCEEEEEeC
Q 011224 304 ------DNMIYVCKIGEN-------RPIK-TFA-GHQGEVNCVKWDPTGSLLASCSD 345 (490)
Q Consensus 304 ------d~~i~~~~~~~~-------~~~~-~~~-~h~~~v~~v~~~~~~~~l~s~~~ 345 (490)
...|..++.... +.+. .+. +..+....|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234555554321 1111 122 11235788999999998887654
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.64 E-value=7.5 Score=39.97 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=77.4
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCceeEEec-C-------CCCCEEEEEecC-CCCEEEEEeCC------CeEEEEEc
Q 011224 211 GEGTLLATGSYD----GQARIWSTNGDLKCTLS-K-------HKGPIFSLKWNK-KGDYLLTGSCD------KTAIVWDV 271 (490)
Q Consensus 211 ~~~~~l~sg~~d----g~i~iw~~~~~~~~~~~-~-------h~~~V~~l~~~~-~~~~l~s~s~D------~~v~iwd~ 271 (490)
.++.+++.||.+ ..+.+||.....-..+. . ....-.+++..+ ++..++.|+.+ ..+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777888754 45777776544322222 1 000112233333 56666777654 35789999
Q ss_pred cCcceeEeeeeecc--CeEEEEccCCceEEEEcCCC--eEEEEEcCCCcceeE-----ecCCCCCeeEEEEcCC-CCEEE
Q 011224 272 KTEEWKQQFEFHSG--PTLDVDWRNNVSFATSSTDN--MIYVCKIGENRPIKT-----FAGHQGEVNCVKWDPT-GSLLA 341 (490)
Q Consensus 272 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~--~i~~~~~~~~~~~~~-----~~~h~~~v~~v~~~~~-~~~l~ 341 (490)
.+..|...-..... ....+.+.++..++.++.++ .+.+|+..+..-... +........++.+... +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 98877654221111 11122223555666665433 678888766432111 1111112233555555 67777
Q ss_pred EEeC--C-----CeEEEEecCCCc
Q 011224 342 SCSD--D-----VTAKIWNMKQDK 358 (490)
Q Consensus 342 s~~~--d-----g~i~iwd~~~~~ 358 (490)
.|+. + ..+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7775 2 358889987766
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=91.43 E-value=2.6 Score=39.13 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=26.2
Q ss_pred CeEEEEEccCcceeEeeeeeccC-e-EEEEccCCceEEEEcC------CCeEEEEEc
Q 011224 264 KTAIVWDVKTEEWKQQFEFHSGP-T-LDVDWRNNVSFATSST------DNMIYVCKI 312 (490)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~------d~~i~~~~~ 312 (490)
..+.+||+.+..|...-...... . .++...++..++.++. ...++.+++
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEe
Confidence 57899999998877643221111 1 2223334555555542 234566665
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.36 E-value=7.6 Score=34.69 Aligned_cols=220 Identities=15% Similarity=0.049 Sum_probs=107.7
Q ss_pred ceeEEEECCCCCEEEEEECCCcEEEEecCCCCCCCCCCCCCceeEEEEeeecccccCCCCeEEEEEcCCCCEEEEEeCCC
Q 011224 144 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 223 (490)
Q Consensus 144 ~V~~~~~sp~~~~l~sgs~D~~i~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~~~~~l~sg~~dg 223 (490)
.|..++....-.+++ . ||.|..|-......... | ......|..++-......++ . ||
T Consensus 25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~----p-------------~~~~~~i~~ia~G~~hs~~l--~-~G 81 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTM----P-------------AATQSGVDAIAAGNYHSLAL--K-DG 81 (282)
T ss_dssp SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSC----C-------------GGGGSCCCEEEECSSEEEEE--E-TT
T ss_pred CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCC----C-------------ccCCCCEEEEEeCCCEEEEE--E-CC
Confidence 355665543322333 4 88898887543222110 0 00112455665544433333 4 89
Q ss_pred eEEEEECCC--ceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccCcceeEeeeeeccCeEEEEccCCceEEEE
Q 011224 224 QARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 301 (490)
Q Consensus 224 ~i~iw~~~~--~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (490)
.|+.|-.+. ++- .-..-...|..++.... ..+.-. ||.|..|-................+..+.......++..
T Consensus 82 ~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~ 157 (282)
T 3qhy_B 82 EVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK 157 (282)
T ss_dssp EEEEEECCTTSTTC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE
T ss_pred EEEEeeCCCCCCCC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE
Confidence 999997542 111 00111346777765543 333334 899999965432111111111234555555444445544
Q ss_pred cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeeccccccEEEEEEcCCCCC
Q 011224 302 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG 381 (490)
Q Consensus 302 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~ 381 (490)
++.++.|-......+..-..-...|..++...... ++. .||.+..|-......+..-......|..|+-....
T Consensus 158 --~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-- 230 (282)
T 3qhy_B 158 --NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-- 230 (282)
T ss_dssp --TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC--
T ss_pred --CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE--
Confidence 68999997654322111011123566776654332 333 59999999765433221111112345555433322
Q ss_pred CCCCCCcEEEEEEECCCcEEEEeCCC
Q 011224 382 TNNPNQQLILASASFDSTVKLWDVEL 407 (490)
Q Consensus 382 ~~~~~~~~~l~sgs~dg~i~iwd~~~ 407 (490)
.++.. ||.|..|-...
T Consensus 231 --------~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 231 --------SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp --------EEEEE--TTEEEEESTTC
T ss_pred --------EEEEE--CCEEEEecCCC
Confidence 23333 89999997554
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.83 E-value=12 Score=35.82 Aligned_cols=233 Identities=12% Similarity=0.137 Sum_probs=121.4
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCCCeEEEEEccC-cceeEeeeeecc-
Q 011224 208 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSG- 285 (490)
Q Consensus 208 ~~s~~~~~l~sg~~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~- 285 (490)
-.+|..+.++--. ..++.|++++.+....-.....+|.--+|-.....-++. +..|.-|++.. ...+..|..|..
T Consensus 72 IMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT--~taVyHWsi~~~s~P~kvFdR~~~L 148 (494)
T 1bpo_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT--DNAVYHWSMEGESQPVKMFDRHSSL 148 (494)
T ss_dssp EECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC--SSEEEEEESSSSCCCEEEEECCGGG
T ss_pred eeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc--CCeeEEecccCCCCchhheecchhc
Confidence 3566666666655 689999999876543332334566667776544332222 46899999864 345666666543
Q ss_pred -CeEEEEc--cC--CceEEEE--cC----CCeEEEEEcCCCcceeEecCCCCCeeEEEEcCC---CCEEEEEeCC---Ce
Q 011224 286 -PTLDVDW--RN--NVSFATS--ST----DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---GSLLASCSDD---VT 348 (490)
Q Consensus 286 -~~~~~~~--~~--~~~~~~~--~~----d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~l~s~~~d---g~ 348 (490)
...-+.+ .. ...++.| .. .|.+.+|..... .-+.+.||.+....+...-+ .++++.+... ++
T Consensus 149 ~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~k 227 (494)
T 1bpo_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (494)
T ss_dssp TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCE
T ss_pred ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcE
Confidence 1222222 22 2222222 12 245566666443 34567778665544433211 1244444443 68
Q ss_pred EEEEecCCC-ceeeeeccccccEEEEEEcCCCCCCC------CCCCcEEEEEEECCCcEEEEeCCCCeEEEEeeCCCCCE
Q 011224 349 AKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTN------NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 421 (490)
Q Consensus 349 i~iwd~~~~-~~~~~~~~~~~~i~~v~~~p~g~~~~------~~~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~h~~~v 421 (490)
++|-++... .--.. .......+-|.|+..... ++. .-++..-..-|.|.+||+.++.+++.-.-...+|
T Consensus 228 Lhi~Ei~~~~~~~~~---f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~i 303 (494)
T 1bpo_A 228 LHIIEVGTPPTGNQP---FPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 303 (494)
T ss_dssp EEEEECSCCCTTCCC---CCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEEEcCCCccCCCC---ccceeeeeeCCcccccCceeEEEeccc-CCEEEEEecCceEEEEecccceeeeeecccCCce
Confidence 888887432 00001 111122223333221100 000 1145556688999999999999998776555566
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEEcC
Q 011224 422 YSLAFSPTGEYLASGSLDKSMHIWSLK 448 (490)
Q Consensus 422 ~~l~~spdg~~l~s~s~dg~i~iw~~~ 448 (490)
..-+.+....-++.....|.|.--.+.
T Consensus 304 F~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 304 FVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred EEecccCCCCcEEEEccCceEEEEEEc
Confidence 555544444444444455555444443
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=90.77 E-value=0.6 Score=45.82 Aligned_cols=90 Identities=13% Similarity=0.206 Sum_probs=61.6
Q ss_pred cEEEEeCCC----Ce-EEEEeeCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEcCC------CeE-------EEEEecC
Q 011224 399 TVKLWDVEL----GK-LLYSLNGHREPVYSLAFSPTGEYLASGS-LDKSMHIWSLKE------GKI-------VKTYTGN 459 (490)
Q Consensus 399 ~i~iwd~~~----~~-~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iw~~~~------~~~-------~~~~~~~ 459 (490)
.|.+.|.+. +. .++.+. -......+..+|||++++.++ .+.+|.++++.+ +++ +......
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CeeEEccccccccCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 366777665 22 222222 223346688999999987655 588999999874 222 3333334
Q ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEEee
Q 011224 460 GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489 (490)
Q Consensus 460 ~~v~~~~~~~~g~~la~~~~d~~v~v~~~~ 489 (490)
-+....+|.++|+-..+.+.|..|.-||+.
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni~ 407 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNME 407 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEecc
Confidence 468999999999766777899999999973
No 348
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.82 E-value=1.1 Score=43.97 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=67.1
Q ss_pred EEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCCCC------e-------EEEEeeCCCCCEEEEEECCCCCEEEEEe
Q 011224 371 YTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELG------K-------LLYSLNGHREPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 371 ~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~~------~-------~~~~~~~h~~~v~~l~~spdg~~l~s~s 437 (490)
..+..+|+| ++++++|-.+.++.++|++.. + ...... -...-...+|.++|.-..|--
T Consensus 326 HGv~vsPDG--------kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlf 396 (638)
T 3sbq_A 326 HGCNTSSDG--------KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLF 396 (638)
T ss_dssp CCEEECTTS--------CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEET
T ss_pred cceeeCCCC--------CEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeee
Confidence 344555665 467888888999999998731 1 122333 223457789999996556666
Q ss_pred CCCcEEEEEcCCC----------eEEEEEecCCCEEEEEE------CCCCCEEEEE
Q 011224 438 LDKSMHIWSLKEG----------KIVKTYTGNGGIFEVCW------NKEGDKIAAC 477 (490)
Q Consensus 438 ~dg~i~iw~~~~~----------~~~~~~~~~~~v~~~~~------~~~g~~la~~ 477 (490)
.|..|.-|++.+. .++..+.-+..+-.+.- .|||++|++.
T Consensus 397 idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 397 IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred ecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 8999999998753 45666655555555544 7899999887
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=88.84 E-value=13 Score=33.54 Aligned_cols=234 Identities=7% Similarity=0.001 Sum_probs=117.9
Q ss_pred CCCCEEEEEe--CCCeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEeCC--------------CeEEEEEccCc
Q 011224 211 GEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------KTAIVWDVKTE 274 (490)
Q Consensus 211 ~~~~~l~sg~--~dg~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s~D--------------~~v~iwd~~~~ 274 (490)
.++.+++-.. .++.|...+.++.....+... .+--+++++.+|+-+... ..|+..++...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 3555555543 245666666666544444322 123457888887755432 35777777766
Q ss_pred ceeEeeeeeccCeEEEEccCCceEEEE---cCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeC-CCeEE
Q 011224 275 EWKQQFEFHSGPTLDVDWRNNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAK 350 (490)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-dg~i~ 350 (490)
+..... ..+...+....+..+.+. .....|+..++...... .+..+.. .+++|+++.|.-.+. ...|.
T Consensus 99 ~~~~l~---~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy 170 (302)
T 3s25_A 99 GSTVLD---PDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL----FTCNTSDRYFYYNNPKNGQLY 170 (302)
T ss_dssp CCEEEE---CSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC----CCSEEETTEEEEECTTTCCEE
T ss_pred cceEee---cCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc----eEeeEECCEEEEEeCCCceEE
Confidence 533221 222334444455545444 34556777777654433 3333322 346778888876655 56777
Q ss_pred EEecCCCceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECC--CcEEEEeCCCCeEEEEeeCCCCCEEEEEECC
Q 011224 351 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD--STVKLWDVELGKLLYSLNGHREPVYSLAFSP 428 (490)
Q Consensus 351 iwd~~~~~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp 428 (490)
.-++..+.....+. .... ..+.|++. .|+-.... ..|..-++.... ...+.. ..+ ..|+|
T Consensus 171 ~~~l~g~~~~~l~~---~~~~-~~~~P~g~---------~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~ 232 (302)
T 3s25_A 171 RYDTASQSEALFYD---CNCY-KPVVLDDT---------NVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNV 232 (302)
T ss_dssp EEETTTTEEEEEEC---SCEE-EEEEEETT---------EEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEE
T ss_pred EEECCCCCEEEEeC---CCcc-ceeeecCC---------EEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEE
Confidence 77776554322222 2222 23447664 33333322 345555555333 333332 223 34788
Q ss_pred CCCEEEEEeC--CCcEEEEEcCCCeEEEEEecCCCEEEEEECCCCCEEEEEE
Q 011224 429 TGEYLASGSL--DKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 429 dg~~l~s~s~--dg~i~iw~~~~~~~~~~~~~~~~v~~~~~~~~g~~la~~~ 478 (490)
++.+|.-++. .+.|..-++..........+ .+. .+++.+++|.-..
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTSCCCEEEEES--CEE--EEEECSSEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEEECCCCccEEeeCC--ccc--eEEEeCCEEEEEE
Confidence 8888876533 34555555543322222222 232 4455666665543
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.48 E-value=24 Score=34.03 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=57.6
Q ss_pred CEEEEEecCCCC-EEEEEeCCCeEEEEEccCcc---eeEeee--e-------eccCeEEEEccCC-----ceEEEEc--C
Q 011224 244 PIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEE---WKQQFE--F-------HSGPTLDVDWRNN-----VSFATSS--T 303 (490)
Q Consensus 244 ~V~~l~~~~~~~-~l~s~s~D~~v~iwd~~~~~---~~~~~~--~-------~~~~~~~~~~~~~-----~~~~~~~--~ 303 (490)
.-+.|+|.|++. .|+.+...|.|++++..... .+..+. . .....+.+.+.++ ..+++-+ .
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 447899999996 56777889999999754321 111110 0 0233556666543 3333322 1
Q ss_pred C----------CeEEEEEcCCC----------cceeEec--CCCCCeeEEEEcCCCCEEEEEeCCC
Q 011224 304 D----------NMIYVCKIGEN----------RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDV 347 (490)
Q Consensus 304 d----------~~i~~~~~~~~----------~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~dg 347 (490)
+ ..|.-+.+... +.+..+. ........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 13444555321 1222221 2223467899999999888777644
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=81.22 E-value=31 Score=31.06 Aligned_cols=139 Identities=9% Similarity=0.036 Sum_probs=78.5
Q ss_pred EEcCCCCEEEEEeCC--------------CeEEEEECCCceeEEecCCCCCEEEEEecCCCCEEEEEe--C--CCeEEEE
Q 011224 208 DWNGEGTLLATGSYD--------------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--C--DKTAIVW 269 (490)
Q Consensus 208 ~~s~~~~~l~sg~~d--------------g~i~iw~~~~~~~~~~~~h~~~V~~l~~~~~~~~l~s~s--~--D~~v~iw 269 (490)
-++++|.+|+-+... ..|+..++.+.....+... . +..|++++++|+-.. . ...|..-
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 456778777766543 3567777776544444322 2 235677888877654 3 3445555
Q ss_pred EccCcceeEeeeeeccCeEEEEccCCceEEEEcCCCeEEEEEcCCCcceeEecCCCCCeeEEEEcCCCCEEEEEeCCC--
Q 011224 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-- 347 (490)
Q Consensus 270 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~dg-- 347 (490)
++...... .+..+.. ..++|.....+.+......|++.++........+.+ ... ..++|++.+|+-....+
T Consensus 135 ~~dGs~~~-~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~ 207 (302)
T 3s25_A 135 RIDGEEKK-KIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDN 207 (302)
T ss_dssp ETTSCCCE-EEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTT
T ss_pred ECCCCCeE-EEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCc
Confidence 66544332 2222211 334666666666666677888888876654444432 222 33568998887666443
Q ss_pred eEEEEecCCC
Q 011224 348 TAKIWNMKQD 357 (490)
Q Consensus 348 ~i~iwd~~~~ 357 (490)
.|..-++...
T Consensus 208 ~I~~~~ldG~ 217 (302)
T 3s25_A 208 AIVHVNINNP 217 (302)
T ss_dssp EEEEECSSSC
T ss_pred EEEEEECCCC
Confidence 4444455443
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.08 E-value=12 Score=39.93 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=33.4
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEE
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~ 456 (490)
.|.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5677888889999999999999999999999998876
No 353
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=67.96 E-value=23 Score=35.32 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=40.8
Q ss_pred CEEEEEECCCCCEEEEEeCC------------CcEEEEEcCCCeEEEEEecC--CCEEEEEECCCCCEEEEE
Q 011224 420 PVYSLAFSPTGEYLASGSLD------------KSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAAC 477 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~d------------g~i~iw~~~~~~~~~~~~~~--~~v~~~~~~~~g~~la~~ 477 (490)
..-.|+|+|.|.+++.--.+ ..+.+.+..+|++...+.+. ..++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34679999999866653211 24666677778876666543 348999999999987665
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=67.04 E-value=81 Score=29.25 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=25.6
Q ss_pred CEEEEEeCCCeEEEEECCC--ceeEEe--cCCCCCEEEEEecC-CCCEEEEEeCCC
Q 011224 214 TLLATGSYDGQARIWSTNG--DLKCTL--SKHKGPIFSLKWNK-KGDYLLTGSCDK 264 (490)
Q Consensus 214 ~~l~sg~~dg~i~iw~~~~--~~~~~~--~~h~~~V~~l~~~~-~~~~l~s~s~D~ 264 (490)
..|..|...| +.+++... ..-..+ ......|.+|++.| +...|+.++..+
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 3566777766 44444321 211111 12235689999998 234455555454
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=66.66 E-value=26 Score=34.71 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=42.7
Q ss_pred CCEEEEEECCCCCEEE-EEeC-----------CCcEEEEEcCCCeEEEEEecC--CCEEEEEECCCCCEEEEEE
Q 011224 419 EPVYSLAFSPTGEYLA-SGSL-----------DKSMHIWSLKEGKIVKTYTGN--GGIFEVCWNKEGDKIAACF 478 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~-s~s~-----------dg~i~iw~~~~~~~~~~~~~~--~~v~~~~~~~~g~~la~~~ 478 (490)
.....|+|+++|.+.+ +=+. ...|..++..+|++...+... ..++.++|+||++.|..+-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3468899999998777 4211 125777777788876655542 3589999999999877653
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=65.62 E-value=1.2e+02 Score=30.92 Aligned_cols=225 Identities=13% Similarity=0.085 Sum_probs=114.1
Q ss_pred ecCCCCEEEEE----eCC-CeEEEEEccCcceeE-eeeeeccC--------eEEEEccCCceEEEEc-----------CC
Q 011224 250 WNKKGDYLLTG----SCD-KTAIVWDVKTEEWKQ-QFEFHSGP--------TLDVDWRNNVSFATSS-----------TD 304 (490)
Q Consensus 250 ~~~~~~~l~s~----s~D-~~v~iwd~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~-----------~d 304 (490)
++|++++++.+ ++| ..++++|+.+++.+. .|. .... ...+.|.+...+..+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCC
Confidence 78888775432 222 468999999988764 122 1100 0223565444443321 12
Q ss_pred CeEEEEEcCCCc--ceeEecCCCCCe-eEEEEcCCCC-----EEEEEeCC---CeEEEEecCC--CceeeeeccccccEE
Q 011224 305 NMIYVCKIGENR--PIKTFAGHQGEV-NCVKWDPTGS-----LLASCSDD---VTAKIWNMKQ--DKYVHDLREHSKEIY 371 (490)
Q Consensus 305 ~~i~~~~~~~~~--~~~~~~~h~~~v-~~v~~~~~~~-----~l~s~~~d---g~i~iwd~~~--~~~~~~~~~~~~~i~ 371 (490)
..|+.|.+++.. ....|.+....+ .++..+++++ .+++.+.+ ..+.+.+... +.. ..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcc--
Confidence 468889888753 344555544333 3455566766 35554423 2344555432 221 222111111
Q ss_pred EEEEcCCCCCCCCCCCcEEEEE---------EECCCcEEEEeCCCCe-------EEEE-ee-CCCCCEEEEEECCCCCEE
Q 011224 372 TIRWSPTGSGTNNPNQQLILAS---------ASFDSTVKLWDVELGK-------LLYS-LN-GHREPVYSLAFSPTGEYL 433 (490)
Q Consensus 372 ~v~~~p~g~~~~~~~~~~~l~s---------gs~dg~i~iwd~~~~~-------~~~~-~~-~h~~~v~~l~~spdg~~l 433 (490)
.+...+.+. +++.+ ....+.|...++.++. .... +. .....+..+.|..+ .++
T Consensus 293 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 293 TLQGSFKEY--------VFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp EEEEEETTE--------EEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred eEeeeECCE--------EEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 112223321 23322 1246778888876531 1122 22 22346788899876 566
Q ss_pred EEEeCCC--cEEEEEcCCCe-EEEE-E--ecCCCEEEEEECCCCCEEEEE-EC---CCcEEEEE
Q 011224 434 ASGSLDK--SMHIWSLKEGK-IVKT-Y--TGNGGIFEVCWNKEGDKIAAC-FA---NHTVCVLD 487 (490)
Q Consensus 434 ~s~s~dg--~i~iw~~~~~~-~~~~-~--~~~~~v~~~~~~~~g~~la~~-~~---d~~v~v~~ 487 (490)
++...++ .|.++++.+|+ .+.. + ...+.+..++++++++.++.. +. -..+..+|
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d 427 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWV 427 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEe
Confidence 7777776 46777776664 1222 2 333457777778887654433 22 24555554
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.22 E-value=12 Score=40.02 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677888888999999999999999999999887654
No 358
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=56.07 E-value=20 Score=36.51 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEec
Q 011224 419 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 458 (490)
Q Consensus 419 ~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 458 (490)
..|.++.+ +..+|++-+.|.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666655 367999999999999999999998877643
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.56 E-value=8.8 Score=42.05 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=32.4
Q ss_pred CEEEEEECCCCCEEEEEeCCCcEEEEEcCCCeEEEEEe
Q 011224 420 PVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 457 (490)
Q Consensus 420 ~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~~~~~~~ 457 (490)
.+.+++..++..+|++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556677888999999999999999999999988763
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.10 E-value=14 Score=40.59 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeee
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 363 (490)
.+.+++..++..++++-+.|+++|||++.++.++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4556677788899999999999999999999887653
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.15 E-value=30 Score=35.28 Aligned_cols=36 Identities=17% Similarity=0.435 Sum_probs=28.8
Q ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEEecCCCceeeeec
Q 011224 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364 (490)
Q Consensus 327 ~v~~v~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 364 (490)
.|.++.+ +..++++-+.|.++|+|++++++++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3555554 47899999999999999999998876543
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=44.66 E-value=1.9e+02 Score=26.61 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=38.8
Q ss_pred CCeEEEEEcC--CCCEEEEEeCCC----eEEEEECCCceeEEec------C--------CCCCEEEEEecCC--CCEEEE
Q 011224 202 KDVTTLDWNG--EGTLLATGSYDG----QARIWSTNGDLKCTLS------K--------HKGPIFSLKWNKK--GDYLLT 259 (490)
Q Consensus 202 ~~V~~~~~s~--~~~~l~sg~~dg----~i~iw~~~~~~~~~~~------~--------h~~~V~~l~~~~~--~~~l~s 259 (490)
..|.+|++.| .+.+.+. +..| .|...+-.+..-..+. . +...|.+|++.|. ...|+.
T Consensus 55 ~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMA-ARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEEE-EEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEEE-ecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4699999998 5555544 4444 3433322222111111 1 1125788998873 456776
Q ss_pred EeCCCeEEEEEccCccee
Q 011224 260 GSCDKTAIVWDVKTEEWK 277 (490)
Q Consensus 260 ~s~D~~v~iwd~~~~~~~ 277 (490)
+...+.|...+-....+.
T Consensus 134 g~~~ggl~~S~DgG~tW~ 151 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASWE 151 (394)
T ss_dssp EEETTEEEEESSTTSBCE
T ss_pred EecCCcEEEEcCCCCCeE
Confidence 666666665543333443
No 363
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=35.52 E-value=3e+02 Score=26.27 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCeEEEEECCCce----eEEec---------CCCCCEEEEEecCC
Q 011224 203 DVTTLDWNGEGT-LLATGSYDGQARIWSTNGDL----KCTLS---------KHKGPIFSLKWNKK 253 (490)
Q Consensus 203 ~V~~~~~s~~~~-~l~sg~~dg~i~iw~~~~~~----~~~~~---------~h~~~V~~l~~~~~ 253 (490)
.-+.|+|.|+|. .|+.+...|.|++++..+.. ...+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 357899999996 45556788999999765431 11111 11356789999996
No 364
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=34.43 E-value=1.4e+02 Score=29.48 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=26.6
Q ss_pred cEEEEeCCCCeEEEEeeCC-CCCEEEEEECCCCCEEEEE
Q 011224 399 TVKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 399 ~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~s~ 436 (490)
.|..++..+++....+.+. ...++.++||||++.|..+
T Consensus 510 ~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4666677677765555433 3468999999999887654
No 365
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=31.21 E-value=2e+02 Score=28.62 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=25.6
Q ss_pred EEEEeCCCCeEEEEeeCC-CCCEEEEEECCCCCEEEEE
Q 011224 400 VKLWDVELGKLLYSLNGH-REPVYSLAFSPTGEYLASG 436 (490)
Q Consensus 400 i~iwd~~~~~~~~~~~~h-~~~v~~l~~spdg~~l~s~ 436 (490)
+.+.+..+++...-+.+. ...++.++|+||++.|...
T Consensus 511 ~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 511 MLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred EEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 445566667665555544 3569999999999877654
No 366
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=25.51 E-value=4.1e+02 Score=24.62 Aligned_cols=163 Identities=7% Similarity=0.092 Sum_probs=86.7
Q ss_pred eEEEEEccCc--ceeEeeeeeccC------eEEEEcc---------CCceEEEEcCCCeEEEEEcCCCcceeEec-----
Q 011224 265 TAIVWDVKTE--EWKQQFEFHSGP------TLDVDWR---------NNVSFATSSTDNMIYVCKIGENRPIKTFA----- 322 (490)
Q Consensus 265 ~v~iwd~~~~--~~~~~~~~~~~~------~~~~~~~---------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~----- 322 (490)
.|.+||+.+. +.++.+...... ...+... ....+++-+....|.++++.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 777777654321 2222222 12235566667788899988765443331
Q ss_pred ---------CC----CCCeeEEEEcCC----CCEEEEEeCCCeEEEEecCCC-----ce---eeeeccc--cccEEEEEE
Q 011224 323 ---------GH----QGEVNCVKWDPT----GSLLASCSDDVTAKIWNMKQD-----KY---VHDLREH--SKEIYTIRW 375 (490)
Q Consensus 323 ---------~h----~~~v~~v~~~~~----~~~l~s~~~dg~i~iwd~~~~-----~~---~~~~~~~--~~~i~~v~~ 375 (490)
|. ...+..++++|+ ++.|.-+...+ -++|.+.+. .. +..+-.. .......+.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 135778889987 66666665544 234443221 11 1111001 112223334
Q ss_pred c-CCCCCCCCCCCcEEEEEEECCCcEEEEeCCC-C----e-EEEEeeCCCCCEEEEEECCCCCEEEEEe
Q 011224 376 S-PTGSGTNNPNQQLILASASFDSTVKLWDVEL-G----K-LLYSLNGHREPVYSLAFSPTGEYLASGS 437 (490)
Q Consensus 376 ~-p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~~-~----~-~~~~~~~h~~~v~~l~~spdg~~l~s~s 437 (490)
. .+| .++++--....|..|+... . . .+......-..+.++++.++|.+.+..+
T Consensus 283 D~~~G---------~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTK---------VIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTC---------EEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCC---------eEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 3 233 3555666777899999875 1 1 1111222334577888877777656554
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=24.04 E-value=4e+02 Score=23.98 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=79.0
Q ss_pred CCCEEEEEeCCCeEEEEecCCC-------ceeeeeccccccEEEEEEcCCCCCCCCCCCcEEEEEEECCCcEEEEeCC--
Q 011224 336 TGSLLASCSDDVTAKIWNMKQD-------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-- 406 (490)
Q Consensus 336 ~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~i~~v~~~p~g~~~~~~~~~~~l~sgs~dg~i~iwd~~-- 406 (490)
+..+++..+..|.++--.+... .....++.. ..+..+....... .|+..+..|.+..+...
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d---------~ill~T~~G~~~rf~~~~~ 177 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGD---------DLLLVSANGQSIRFSATDE 177 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTC---------EEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCC---------EEEEEECCCeEEEEECccc
Confidence 5789999999999998775432 111223332 3333333222211 35556778888777665
Q ss_pred C---------CeEEEEeeCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEcCCCe-------EEEEEe--c-CCCEEEEEE
Q 011224 407 L---------GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK-------IVKTYT--G-NGGIFEVCW 467 (490)
Q Consensus 407 ~---------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw~~~~~~-------~~~~~~--~-~~~v~~~~~ 467 (490)
. |.....+. ....|.++..-+++.+|+..+..|.++.-.+.... -+..+. . .+.+..+..
T Consensus 178 eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~ 256 (327)
T 3uc1_A 178 ALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALI 256 (327)
T ss_dssp TSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEE
T ss_pred ccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEE
Confidence 2 12222232 23456666666667789999999999988764322 122221 1 334544444
Q ss_pred CCCCCEEEEEECCCcEEEEE
Q 011224 468 NKEGDKIAACFANHTVCVLD 487 (490)
Q Consensus 468 ~~~g~~la~~~~d~~v~v~~ 487 (490)
..+...++..+.+|.+..+.
T Consensus 257 ~~~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 257 VDDDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp ECTTCEEEEEEGGGCEEEEE
T ss_pred eCCCccEEEEcCCCeEEEEe
Confidence 34445666667777665554
Done!