Query 011226
Match_columns 490
No_of_seqs 684 out of 2788
Neff 11.7
Searched_HMMs 46136
Date Thu Mar 28 23:00:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 7.2E-66 1.6E-70 513.8 55.3 452 22-485 373-854 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.4E-65 1.8E-69 506.1 55.1 431 50-489 365-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 5.2E-60 1.1E-64 469.6 49.7 441 23-476 91-561 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.7E-60 1.9E-64 479.0 46.4 453 22-487 155-634 (857)
5 PLN03077 Protein ECB2; Provisi 100.0 1.2E-58 2.7E-63 470.6 46.7 445 22-489 54-500 (857)
6 PLN03081 pentatricopeptide (PP 100.0 7.3E-59 1.6E-63 461.4 42.5 419 51-489 83-505 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-27 8E-32 245.7 52.2 404 37-460 448-852 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-26 3.8E-31 240.7 53.3 386 56-460 500-886 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.9E-23 4.1E-28 186.8 36.8 435 23-479 18-490 (966)
10 PRK11788 tetratricopeptide rep 99.9 1.2E-22 2.5E-27 190.2 34.7 300 133-446 45-354 (389)
11 KOG4626 O-linked N-acetylgluco 99.9 3.5E-22 7.5E-27 178.8 32.0 389 51-460 112-505 (966)
12 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.3E-25 185.3 44.5 336 54-399 41-382 (656)
13 PRK11788 tetratricopeptide rep 99.9 4.4E-22 9.5E-27 186.3 33.4 296 100-401 45-350 (389)
14 TIGR00990 3a0801s09 mitochondr 99.9 4.8E-20 1E-24 181.4 47.0 398 57-465 129-562 (615)
15 PRK11447 cellulose synthase su 99.9 5.3E-20 1.2E-24 192.8 49.4 395 63-476 277-745 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 4.6E-20 1E-24 180.8 43.4 346 93-454 45-396 (656)
17 TIGR00990 3a0801s09 mitochondr 99.9 8.3E-20 1.8E-24 179.7 45.1 298 93-399 130-463 (615)
18 PRK11447 cellulose synthase su 99.9 2.7E-19 5.9E-24 187.5 51.4 314 133-460 279-686 (1157)
19 PRK10049 pgaA outer membrane p 99.9 7.1E-20 1.5E-24 183.4 43.4 418 50-486 10-468 (765)
20 PRK10049 pgaA outer membrane p 99.9 1.9E-18 4.1E-23 173.2 45.0 406 23-447 19-463 (765)
21 PRK14574 hmsH outer membrane p 99.9 3.3E-17 7.2E-22 161.2 48.0 384 65-464 44-503 (822)
22 PRK09782 bacteriophage N4 rece 99.9 2.6E-16 5.6E-21 158.2 48.9 406 54-480 180-712 (987)
23 KOG4422 Uncharacterized conser 99.8 9E-16 1.9E-20 132.3 39.0 430 23-474 120-592 (625)
24 PRK09782 bacteriophage N4 rece 99.8 2.2E-15 4.8E-20 151.6 47.2 189 278-481 490-679 (987)
25 PRK14574 hmsH outer membrane p 99.8 2.8E-15 6E-20 147.8 46.8 374 58-445 71-518 (822)
26 KOG2002 TPR-containing nuclear 99.8 6E-16 1.3E-20 146.4 35.4 418 52-481 267-752 (1018)
27 KOG2003 TPR repeat-containing 99.8 6.9E-16 1.5E-20 134.0 30.0 348 98-460 284-709 (840)
28 KOG4422 Uncharacterized conser 99.8 1.7E-14 3.7E-19 124.5 35.3 346 50-399 202-591 (625)
29 KOG2002 TPR-containing nuclear 99.8 1.9E-14 4.1E-19 136.5 36.0 392 53-454 305-760 (1018)
30 KOG2076 RNA polymerase III tra 99.7 9.2E-14 2E-18 131.0 38.0 376 58-438 142-554 (895)
31 PRK10747 putative protoheme IX 99.7 5.1E-14 1.1E-18 130.5 33.7 284 136-439 97-390 (398)
32 KOG0495 HAT repeat protein [RN 99.7 2.5E-12 5.5E-17 117.1 42.3 423 36-469 422-877 (913)
33 KOG1915 Cell cycle control pro 99.7 4E-12 8.7E-17 111.5 42.0 401 52-468 70-496 (677)
34 KOG2003 TPR repeat-containing 99.7 4.4E-14 9.6E-19 123.0 27.3 421 53-489 199-705 (840)
35 KOG0495 HAT repeat protein [RN 99.7 5.5E-12 1.2E-16 115.0 41.7 404 44-465 468-905 (913)
36 PF13429 TPR_15: Tetratricopep 99.7 2.9E-16 6.4E-21 139.1 14.3 259 96-361 14-275 (280)
37 PRK10747 putative protoheme IX 99.7 1.4E-13 3.1E-18 127.5 32.6 285 103-398 97-390 (398)
38 TIGR00540 hemY_coli hemY prote 99.7 2.3E-13 4.9E-18 127.0 33.2 286 135-438 96-398 (409)
39 PF13429 TPR_15: Tetratricopep 99.7 1.6E-16 3.4E-21 140.9 11.3 261 60-327 13-276 (280)
40 KOG1155 Anaphase-promoting com 99.7 2.2E-12 4.7E-17 112.9 36.1 378 87-488 161-550 (559)
41 TIGR00540 hemY_coli hemY prote 99.7 2.7E-13 5.8E-18 126.5 32.9 291 102-398 96-399 (409)
42 COG2956 Predicted N-acetylgluc 99.7 3.8E-13 8.2E-18 112.2 29.5 277 171-460 48-330 (389)
43 KOG2076 RNA polymerase III tra 99.7 9.6E-13 2.1E-17 124.2 35.5 349 100-460 149-541 (895)
44 KOG1126 DNA-binding cell divis 99.7 4.5E-14 9.7E-19 128.9 22.8 203 264-477 421-623 (638)
45 KOG1126 DNA-binding cell divis 99.7 5.6E-14 1.2E-18 128.3 23.0 288 136-445 332-626 (638)
46 COG3071 HemY Uncharacterized e 99.6 4.2E-12 9.1E-17 109.4 32.4 291 136-443 97-394 (400)
47 KOG1155 Anaphase-promoting com 99.6 3.2E-11 6.8E-16 105.8 37.7 377 63-457 172-552 (559)
48 KOG0547 Translocase of outer m 99.6 6.9E-12 1.5E-16 110.5 33.2 391 61-465 121-557 (606)
49 COG3071 HemY Uncharacterized e 99.6 4.1E-12 8.9E-17 109.4 30.1 284 68-362 97-389 (400)
50 KOG1915 Cell cycle control pro 99.6 1.2E-10 2.5E-15 102.6 39.1 388 54-456 106-551 (677)
51 COG2956 Predicted N-acetylgluc 99.6 7.3E-12 1.6E-16 104.7 29.7 286 136-438 48-346 (389)
52 KOG1173 Anaphase-promoting com 99.6 5.1E-11 1.1E-15 107.1 36.8 430 50-489 44-533 (611)
53 KOG3785 Uncharacterized conser 99.5 6.9E-10 1.5E-14 94.2 34.7 385 36-443 38-494 (557)
54 KOG1129 TPR repeat-containing 99.5 5E-12 1.1E-16 105.7 19.4 232 197-441 227-460 (478)
55 KOG4318 Bicoid mRNA stability 99.5 1.1E-11 2.4E-16 116.8 23.5 82 262-346 202-283 (1088)
56 KOG1156 N-terminal acetyltrans 99.5 4.4E-09 9.6E-14 96.5 38.5 421 22-462 7-456 (700)
57 KOG2376 Signal recognition par 99.5 1.4E-09 3.1E-14 98.6 34.5 424 22-465 12-513 (652)
58 PRK12370 invasion protein regu 99.5 5.8E-11 1.3E-15 115.2 27.9 264 192-472 255-535 (553)
59 KOG1129 TPR repeat-containing 99.5 1.2E-11 2.5E-16 103.6 19.0 262 202-478 188-462 (478)
60 KOG1174 Anaphase-promoting com 99.5 5.3E-09 1.2E-13 90.8 35.4 371 92-479 99-505 (564)
61 TIGR02521 type_IV_pilW type IV 99.5 4.9E-11 1.1E-15 103.2 24.1 197 125-325 33-229 (234)
62 PRK12370 invasion protein regu 99.5 1.3E-10 2.9E-15 112.7 29.0 251 138-399 276-536 (553)
63 TIGR02521 type_IV_pilW type IV 99.5 1.3E-10 2.9E-15 100.5 26.4 201 193-398 31-232 (234)
64 KOG2047 mRNA splicing factor [ 99.5 2.7E-08 6E-13 91.3 40.9 389 56-460 249-709 (835)
65 KOG1173 Anaphase-promoting com 99.5 1.4E-09 3E-14 98.1 32.3 285 156-454 242-532 (611)
66 KOG4318 Bicoid mRNA stability 99.4 9.2E-11 2E-15 110.8 25.5 222 41-279 11-286 (1088)
67 KOG4162 Predicted calmodulin-b 99.4 1.4E-08 2.9E-13 95.3 37.7 368 85-466 318-775 (799)
68 PF12569 NARP1: NMDA receptor- 99.4 9.4E-10 2E-14 103.2 29.4 186 248-438 130-333 (517)
69 PF12569 NARP1: NMDA receptor- 99.4 1.2E-09 2.6E-14 102.6 29.4 130 267-398 197-334 (517)
70 KOG0547 Translocase of outer m 99.4 4.6E-09 1E-13 93.1 29.5 330 95-442 120-494 (606)
71 KOG1174 Anaphase-promoting com 99.4 3.6E-08 7.7E-13 85.8 33.6 314 121-452 192-512 (564)
72 KOG3785 Uncharacterized conser 99.4 1.5E-08 3.3E-13 86.3 30.7 369 62-460 29-443 (557)
73 PF13041 PPR_2: PPR repeat fam 99.3 3.2E-12 6.9E-17 79.4 5.9 49 121-169 1-49 (50)
74 KOG2047 mRNA splicing factor [ 99.3 6.2E-07 1.3E-11 82.7 40.4 416 53-484 167-661 (835)
75 KOG1840 Kinesin light chain [C 99.3 2.1E-09 4.5E-14 99.7 25.1 245 193-438 199-478 (508)
76 PF13041 PPR_2: PPR repeat fam 99.3 9.5E-12 2.1E-16 77.2 6.4 50 332-381 1-50 (50)
77 KOG1840 Kinesin light chain [C 99.3 6.8E-09 1.5E-13 96.4 26.5 302 93-398 131-479 (508)
78 KOG1156 N-terminal acetyltrans 99.3 5E-07 1.1E-11 83.4 37.6 369 54-441 73-470 (700)
79 COG3063 PilF Tfp pilus assembl 99.3 1.7E-08 3.7E-13 81.0 24.8 200 195-399 37-237 (250)
80 KOG0548 Molecular co-chaperone 99.3 1.3E-07 2.9E-12 85.3 33.0 237 197-457 228-472 (539)
81 PRK11189 lipoprotein NlpI; Pro 99.3 1.1E-08 2.4E-13 90.9 26.7 232 208-450 41-275 (296)
82 KOG4162 Predicted calmodulin-b 99.3 3.3E-07 7.1E-12 86.3 36.5 377 52-441 320-785 (799)
83 COG3063 PilF Tfp pilus assembl 99.2 9.6E-09 2.1E-13 82.4 21.9 193 96-292 41-235 (250)
84 KOG2376 Signal recognition par 99.2 6.4E-07 1.4E-11 81.8 35.7 386 24-436 48-517 (652)
85 cd05804 StaR_like StaR_like; a 99.2 1.4E-07 3.1E-12 87.2 32.5 302 92-399 8-337 (355)
86 KOG4340 Uncharacterized conser 99.2 1.1E-07 2.4E-12 79.3 27.3 299 50-359 5-335 (459)
87 PRK11189 lipoprotein NlpI; Pro 99.2 3.5E-08 7.7E-13 87.7 25.6 226 137-373 40-274 (296)
88 cd05804 StaR_like StaR_like; a 99.2 3.4E-07 7.4E-12 84.7 32.9 311 123-439 6-336 (355)
89 KOG0624 dsRNA-activated protei 99.1 3E-06 6.5E-11 72.3 33.3 301 53-363 36-370 (504)
90 PRK04841 transcriptional regul 99.1 1.2E-06 2.5E-11 91.9 36.4 341 99-441 383-762 (903)
91 KOG0624 dsRNA-activated protei 99.1 7.4E-07 1.6E-11 76.0 27.2 194 123-327 38-251 (504)
92 KOG1914 mRNA cleavage and poly 99.1 1.2E-05 2.5E-10 73.1 35.4 208 245-460 309-525 (656)
93 KOG0548 Molecular co-chaperone 99.1 1.2E-06 2.6E-11 79.3 29.1 394 63-480 10-461 (539)
94 PF04733 Coatomer_E: Coatomer 99.1 1.5E-08 3.4E-13 88.6 17.1 137 308-461 111-251 (290)
95 PF04733 Coatomer_E: Coatomer 99.0 5.8E-09 1.3E-13 91.2 12.5 82 279-362 182-264 (290)
96 KOG1125 TPR repeat-containing 99.0 1.2E-07 2.7E-12 86.2 20.7 247 201-461 293-558 (579)
97 KOG0985 Vesicle coat protein c 99.0 8.5E-06 1.8E-10 79.3 33.5 246 40-322 967-1217(1666)
98 KOG1125 TPR repeat-containing 99.0 1.9E-07 4.2E-12 85.0 21.1 256 167-433 294-565 (579)
99 PRK04841 transcriptional regul 99.0 7.4E-06 1.6E-10 85.9 36.5 330 132-465 383-751 (903)
100 PLN02789 farnesyltranstransfer 98.9 4.5E-06 9.7E-11 74.3 28.0 224 205-441 49-304 (320)
101 KOG1914 mRNA cleavage and poly 98.9 3.8E-05 8.2E-10 69.9 33.5 138 315-460 347-487 (656)
102 KOG1070 rRNA processing protei 98.9 2.5E-06 5.3E-11 85.6 28.4 250 174-437 1441-1698(1710)
103 KOG4340 Uncharacterized conser 98.9 2.7E-06 6E-11 71.2 22.9 292 92-395 12-336 (459)
104 KOG1070 rRNA processing protei 98.9 2.8E-06 6.1E-11 85.2 26.5 226 156-386 1456-1688(1710)
105 KOG3617 WD40 and TPR repeat-co 98.9 1.3E-05 2.7E-10 76.5 29.2 327 64-438 737-1108(1416)
106 PLN02789 farnesyltranstransfer 98.8 6.6E-06 1.4E-10 73.2 26.1 212 236-459 44-269 (320)
107 KOG3616 Selective LIM binding 98.8 4.6E-06 9.9E-11 78.4 25.5 26 410-435 882-907 (1636)
108 KOG1128 Uncharacterized conser 98.8 8.5E-06 1.8E-10 76.7 26.6 220 88-327 396-615 (777)
109 TIGR03302 OM_YfiO outer membra 98.8 3E-06 6.6E-11 73.1 22.7 60 375-439 172-232 (235)
110 KOG1128 Uncharacterized conser 98.8 2.4E-06 5.1E-11 80.3 22.0 216 162-399 402-617 (777)
111 KOG3616 Selective LIM binding 98.8 9E-06 2E-10 76.5 25.5 221 201-466 740-960 (1636)
112 PRK14720 transcript cleavage f 98.8 1E-05 2.2E-10 80.4 27.2 171 266-477 118-289 (906)
113 KOG0985 Vesicle coat protein c 98.8 7.1E-05 1.5E-09 73.2 31.7 338 70-470 1035-1379(1666)
114 PRK10370 formate-dependent nit 98.8 2.9E-06 6.4E-11 70.2 20.0 126 312-448 52-181 (198)
115 TIGR03302 OM_YfiO outer membra 98.8 2.2E-06 4.7E-11 74.0 20.0 185 122-328 32-232 (235)
116 PRK15179 Vi polysaccharide bio 98.7 9.3E-06 2E-10 79.8 25.7 132 264-398 86-217 (694)
117 PRK15359 type III secretion sy 98.7 1.8E-06 3.8E-11 67.5 16.6 125 320-457 14-138 (144)
118 PRK14720 transcript cleavage f 98.7 1E-05 2.3E-10 80.3 25.5 218 90-345 31-268 (906)
119 KOG3617 WD40 and TPR repeat-co 98.7 2.1E-05 4.5E-10 75.1 25.3 213 52-291 754-994 (1416)
120 KOG1127 TPR repeat-containing 98.7 5.4E-05 1.2E-09 73.9 28.5 375 69-460 472-899 (1238)
121 PF12854 PPR_1: PPR repeat 98.7 3.1E-08 6.8E-13 55.0 3.9 32 188-219 2-33 (34)
122 KOG3060 Uncharacterized conser 98.7 1.7E-05 3.7E-10 65.0 21.0 198 242-451 25-231 (289)
123 PRK10370 formate-dependent nit 98.7 4.9E-06 1.1E-10 68.9 18.5 120 277-399 52-174 (198)
124 PF12854 PPR_1: PPR repeat 98.7 3.7E-08 8.1E-13 54.7 3.8 32 259-290 2-33 (34)
125 KOG3081 Vesicle coat complex C 98.7 5E-05 1.1E-09 62.9 23.2 240 202-465 17-261 (299)
126 COG5010 TadD Flp pilus assembl 98.6 9.4E-06 2E-10 67.1 18.9 156 199-359 72-227 (257)
127 COG5010 TadD Flp pilus assembl 98.6 1.2E-05 2.7E-10 66.4 18.5 158 94-255 70-228 (257)
128 KOG3060 Uncharacterized conser 98.6 0.00017 3.6E-09 59.4 24.0 190 205-399 24-221 (289)
129 COG4783 Putative Zn-dependent 98.6 7.3E-05 1.6E-09 67.5 23.6 116 170-289 318-433 (484)
130 PRK15359 type III secretion sy 98.6 4E-06 8.8E-11 65.5 14.3 117 354-482 13-129 (144)
131 PRK15179 Vi polysaccharide bio 98.5 1.4E-05 3.1E-10 78.5 20.5 163 69-236 66-229 (694)
132 KOG3081 Vesicle coat complex C 98.5 3.5E-05 7.6E-10 63.8 19.1 242 38-295 23-273 (299)
133 KOG2053 Mitochondrial inherita 98.5 0.0012 2.6E-08 64.2 40.7 420 47-485 37-515 (932)
134 TIGR02552 LcrH_SycD type III s 98.5 1.5E-05 3.2E-10 62.0 15.0 100 334-441 17-116 (135)
135 COG4783 Putative Zn-dependent 98.4 0.00018 3.8E-09 65.1 22.9 119 310-438 317-436 (484)
136 KOG1127 TPR repeat-containing 98.4 0.00042 9E-09 68.1 26.4 391 55-460 492-938 (1238)
137 TIGR02552 LcrH_SycD type III s 98.4 7.4E-06 1.6E-10 63.7 12.4 123 356-488 5-128 (135)
138 PF09976 TPR_21: Tetratricopep 98.3 4.2E-05 9E-10 60.1 14.7 126 302-436 15-144 (145)
139 TIGR02795 tol_pal_ybgF tol-pal 98.3 6E-05 1.3E-09 57.0 13.9 109 336-449 4-114 (119)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 4.7E-05 1E-09 69.3 14.9 124 303-439 173-297 (395)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.8E-05 1.2E-09 68.7 15.0 123 127-256 173-295 (395)
142 TIGR00756 PPR pentatricopeptid 98.2 3.2E-06 6.9E-11 47.8 4.5 33 125-157 2-34 (35)
143 PF09976 TPR_21: Tetratricopep 98.2 0.0002 4.4E-09 56.2 15.3 114 206-323 24-142 (145)
144 TIGR00756 PPR pentatricopeptid 98.1 6.8E-06 1.5E-10 46.4 4.5 33 336-368 2-34 (35)
145 PF13812 PPR_3: Pentatricopept 98.1 6.2E-06 1.3E-10 46.1 4.2 33 124-156 2-34 (34)
146 KOG2053 Mitochondrial inherita 98.1 0.013 2.8E-07 57.5 38.8 375 41-441 64-504 (932)
147 PF13812 PPR_3: Pentatricopept 98.1 7.9E-06 1.7E-10 45.7 4.3 33 335-367 2-34 (34)
148 PLN03088 SGT1, suppressor of 98.0 0.00034 7.3E-09 64.0 15.8 104 342-454 10-113 (356)
149 PLN03088 SGT1, suppressor of 98.0 0.00016 3.4E-09 66.2 12.8 105 376-488 9-113 (356)
150 PF05843 Suf: Suppressor of fo 98.0 0.00044 9.5E-09 60.9 15.2 129 302-440 4-137 (280)
151 cd00189 TPR Tetratricopeptide 98.0 0.00022 4.9E-09 51.1 11.5 90 199-291 6-95 (100)
152 PF10037 MRP-S27: Mitochondria 98.0 9.2E-05 2E-09 67.7 11.0 120 87-206 63-186 (429)
153 PRK02603 photosystem I assembl 97.9 0.00085 1.8E-08 54.5 15.5 113 336-460 37-166 (172)
154 cd00189 TPR Tetratricopeptide 97.9 0.00026 5.7E-09 50.7 11.5 97 337-441 3-99 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00053 1.1E-08 51.8 13.4 98 197-294 6-106 (119)
156 PRK10866 outer membrane biogen 97.9 0.0061 1.3E-07 52.3 21.0 180 234-437 37-239 (243)
157 PF12895 Apc3: Anaphase-promot 97.9 3.9E-05 8.5E-10 53.7 6.4 80 347-435 2-83 (84)
158 PF08579 RPM2: Mitochondrial r 97.9 0.00011 2.3E-09 52.4 8.3 79 127-205 29-116 (120)
159 PF10037 MRP-S27: Mitochondria 97.9 0.00035 7.5E-09 64.0 13.5 123 225-347 62-186 (429)
160 PF14938 SNAP: Soluble NSF att 97.9 0.002 4.3E-08 57.1 17.9 116 302-421 117-246 (282)
161 KOG0553 TPR repeat-containing 97.9 0.00017 3.7E-09 61.1 10.2 99 378-484 90-188 (304)
162 PF13525 YfiO: Outer membrane 97.8 0.0089 1.9E-07 50.0 20.4 169 235-430 11-198 (203)
163 KOG0553 TPR repeat-containing 97.8 0.00042 9.2E-09 58.8 12.2 125 307-441 89-217 (304)
164 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.9E-10 42.4 3.4 29 125-153 2-30 (31)
165 PRK10866 outer membrane biogen 97.8 0.0094 2E-07 51.2 20.5 178 198-396 37-239 (243)
166 PRK15363 pathogenicity island 97.8 0.001 2.2E-08 51.5 12.6 91 340-438 41-131 (157)
167 KOG0550 Molecular chaperone (D 97.8 0.002 4.3E-08 57.2 15.9 156 272-440 177-351 (486)
168 PF05843 Suf: Suppressor of fo 97.8 0.00088 1.9E-08 59.0 14.1 130 231-363 3-136 (280)
169 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.027 5.8E-07 51.0 32.2 136 50-186 37-189 (660)
170 PRK15363 pathogenicity island 97.8 0.0027 5.9E-08 49.1 14.7 94 127-222 39-132 (157)
171 PF08579 RPM2: Mitochondrial r 97.8 0.00047 1E-08 49.2 9.6 67 243-309 39-114 (120)
172 PF12895 Apc3: Anaphase-promot 97.8 5.9E-05 1.3E-09 52.8 5.2 17 341-357 32-48 (84)
173 PRK10153 DNA-binding transcrip 97.7 0.0034 7.3E-08 60.2 18.0 66 368-441 419-484 (517)
174 PF13414 TPR_11: TPR repeat; P 97.7 0.00029 6.2E-09 47.1 8.0 66 368-441 2-69 (69)
175 PF13432 TPR_16: Tetratricopep 97.7 0.00029 6.4E-09 46.4 8.0 59 375-441 3-62 (65)
176 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 41.2 3.4 29 336-364 2-30 (31)
177 PRK02603 photosystem I assembl 97.7 0.0027 5.9E-08 51.5 14.4 88 229-317 35-124 (172)
178 PF14938 SNAP: Soluble NSF att 97.7 0.0034 7.3E-08 55.7 15.9 97 232-328 117-225 (282)
179 CHL00033 ycf3 photosystem I as 97.7 0.0011 2.5E-08 53.5 12.0 26 231-256 74-99 (168)
180 PF12688 TPR_5: Tetratrico pep 97.7 0.0039 8.4E-08 46.5 13.6 52 170-221 13-66 (120)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00023 5.1E-09 47.4 6.5 62 380-450 2-64 (68)
182 COG4235 Cytochrome c biogenesi 97.6 0.0046 9.9E-08 53.0 15.2 106 291-399 149-257 (287)
183 PF06239 ECSIT: Evolutionarily 97.6 0.00031 6.7E-09 56.9 7.8 115 110-244 34-153 (228)
184 KOG0550 Molecular chaperone (D 97.6 0.027 5.8E-07 50.4 20.0 214 227-455 166-401 (486)
185 CHL00033 ycf3 photosystem I as 97.6 0.0046 9.9E-08 50.0 14.5 101 334-441 35-151 (168)
186 PRK10153 DNA-binding transcrip 97.6 0.0056 1.2E-07 58.7 17.1 138 259-399 332-483 (517)
187 PF14559 TPR_19: Tetratricopep 97.6 0.0003 6.4E-09 46.9 6.1 63 66-129 2-64 (68)
188 KOG1130 Predicted G-alpha GTPa 97.6 0.00051 1.1E-08 60.7 8.9 264 62-326 24-342 (639)
189 PF12688 TPR_5: Tetratrico pep 97.5 0.01 2.2E-07 44.2 14.5 109 340-456 7-117 (120)
190 COG3898 Uncharacterized membra 97.5 0.055 1.2E-06 48.1 31.3 291 125-439 84-392 (531)
191 PF04840 Vps16_C: Vps16, C-ter 97.5 0.064 1.4E-06 48.0 28.7 84 301-394 179-262 (319)
192 COG4700 Uncharacterized protei 97.5 0.031 6.7E-07 44.2 18.3 128 296-433 86-216 (251)
193 PF07079 DUF1347: Protein of u 97.5 0.073 1.6E-06 48.4 36.3 216 244-465 274-515 (549)
194 KOG2796 Uncharacterized conser 97.4 0.057 1.2E-06 45.3 20.4 136 301-443 179-319 (366)
195 PRK10803 tol-pal system protei 97.4 0.0056 1.2E-07 53.0 13.3 101 335-441 144-248 (263)
196 KOG2796 Uncharacterized conser 97.4 0.0056 1.2E-07 51.0 12.3 150 139-297 165-319 (366)
197 KOG1130 Predicted G-alpha GTPa 97.4 0.003 6.6E-08 56.0 11.5 138 300-438 196-343 (639)
198 COG4235 Cytochrome c biogenesi 97.4 0.017 3.6E-07 49.7 15.4 110 323-441 146-258 (287)
199 PF13414 TPR_11: TPR repeat; P 97.4 0.0013 2.9E-08 43.8 7.4 63 193-257 3-66 (69)
200 PF13432 TPR_16: Tetratricopep 97.4 0.0013 2.9E-08 43.1 7.3 56 200-257 4-59 (65)
201 COG4700 Uncharacterized protei 97.3 0.054 1.2E-06 42.9 17.9 130 189-321 85-215 (251)
202 KOG2041 WD40 repeat protein [G 97.3 0.17 3.7E-06 48.6 25.7 178 52-252 689-875 (1189)
203 PF06239 ECSIT: Evolutionarily 97.3 0.0088 1.9E-07 48.7 12.2 31 281-311 120-150 (228)
204 KOG2041 WD40 repeat protein [G 97.3 0.2 4.3E-06 48.2 23.9 337 87-460 689-1072(1189)
205 PF13281 DUF4071: Domain of un 97.2 0.11 2.5E-06 47.0 20.0 165 92-258 143-334 (374)
206 KOG2280 Vacuolar assembly/sort 97.2 0.23 5E-06 48.2 27.8 325 49-393 426-794 (829)
207 PRK10803 tol-pal system protei 97.2 0.012 2.7E-07 50.9 13.5 99 195-295 145-248 (263)
208 PF13281 DUF4071: Domain of un 97.2 0.12 2.7E-06 46.7 19.4 36 408-444 303-338 (374)
209 PF12921 ATP13: Mitochondrial 97.1 0.014 3E-07 44.0 11.4 92 369-460 2-103 (126)
210 PF13525 YfiO: Outer membrane 97.1 0.12 2.6E-06 43.2 19.0 177 267-462 8-195 (203)
211 PF13371 TPR_9: Tetratricopept 97.1 0.0052 1.1E-07 41.5 8.3 58 377-441 3-60 (73)
212 COG3898 Uncharacterized membra 97.1 0.21 4.5E-06 44.7 30.3 280 68-363 97-392 (531)
213 PF03704 BTAD: Bacterial trans 97.0 0.0057 1.2E-07 48.1 8.7 75 412-487 64-145 (146)
214 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.29 6.3E-06 44.6 29.1 373 51-441 72-533 (660)
215 PF13424 TPR_12: Tetratricopep 96.9 0.002 4.3E-08 44.2 5.0 68 370-438 6-74 (78)
216 PF13371 TPR_9: Tetratricopept 96.9 0.0032 7E-08 42.5 6.0 69 417-486 2-70 (73)
217 PRK15331 chaperone protein Sic 96.9 0.074 1.6E-06 41.6 13.8 89 308-398 46-134 (165)
218 PF04840 Vps16_C: Vps16, C-ter 96.8 0.37 8E-06 43.3 27.8 109 231-359 179-287 (319)
219 KOG1538 Uncharacterized conser 96.7 0.33 7.1E-06 46.4 18.6 55 228-291 746-800 (1081)
220 KOG1538 Uncharacterized conser 96.7 0.17 3.7E-06 48.2 16.7 219 123-362 556-801 (1081)
221 PF13428 TPR_14: Tetratricopep 96.7 0.0049 1.1E-07 36.6 4.8 42 411-453 2-43 (44)
222 COG3118 Thioredoxin domain-con 96.7 0.36 7.9E-06 41.6 17.1 145 58-207 137-286 (304)
223 KOG1258 mRNA processing protei 96.6 0.68 1.5E-05 44.0 32.2 184 263-460 296-490 (577)
224 PF03704 BTAD: Bacterial trans 96.6 0.039 8.4E-07 43.4 10.7 71 195-267 64-139 (146)
225 PF13424 TPR_12: Tetratricopep 96.5 0.012 2.5E-07 40.4 6.5 60 196-255 8-72 (78)
226 PRK15331 chaperone protein Sic 96.5 0.046 9.9E-07 42.7 9.8 91 340-438 43-133 (165)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.091 2E-06 48.3 13.1 65 333-399 74-142 (453)
228 PF04053 Coatomer_WDAD: Coatom 96.5 0.067 1.5E-06 50.3 12.8 134 55-219 295-428 (443)
229 KOG0543 FKBP-type peptidyl-pro 96.3 0.074 1.6E-06 47.7 11.6 95 370-472 258-355 (397)
230 PF12921 ATP13: Mitochondrial 96.3 0.11 2.5E-06 39.1 11.0 101 122-242 1-101 (126)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.096 2.1E-06 48.2 12.4 98 298-399 74-175 (453)
232 PF08631 SPO22: Meiosis protei 96.2 0.85 1.8E-05 40.3 24.2 19 378-396 255-273 (278)
233 KOG3941 Intermediate in Toll s 96.1 0.045 9.7E-07 46.4 8.6 63 108-170 52-119 (406)
234 PF13512 TPR_18: Tetratricopep 96.0 0.21 4.6E-06 38.1 11.2 75 272-346 18-94 (142)
235 COG4105 ComL DNA uptake lipopr 96.0 0.8 1.7E-05 38.8 21.8 182 239-441 44-234 (254)
236 KOG4555 TPR repeat-containing 96.0 0.15 3.2E-06 37.8 9.8 95 343-441 52-146 (175)
237 KOG2114 Vacuolar assembly/sort 96.0 1.9 4.2E-05 42.8 26.0 181 53-256 332-517 (933)
238 PF10300 DUF3808: Protein of u 96.0 1.6 3.5E-05 41.8 22.1 181 211-399 175-377 (468)
239 COG1729 Uncharacterized protei 95.9 0.28 6.1E-06 41.8 12.6 101 336-441 144-246 (262)
240 COG0457 NrfG FOG: TPR repeat [ 95.9 0.96 2.1E-05 38.5 29.3 226 207-441 37-267 (291)
241 COG1729 Uncharacterized protei 95.8 0.21 4.6E-06 42.5 11.2 99 195-296 144-247 (262)
242 PF07079 DUF1347: Protein of u 95.8 1.6 3.5E-05 40.2 33.9 407 64-484 15-501 (549)
243 COG3118 Thioredoxin domain-con 95.6 1.3 2.8E-05 38.4 18.1 143 307-460 142-287 (304)
244 PF10300 DUF3808: Protein of u 95.6 0.93 2E-05 43.4 16.4 164 196-362 191-375 (468)
245 smart00299 CLH Clathrin heavy 95.4 0.91 2E-05 35.2 15.2 127 302-457 10-137 (140)
246 COG4785 NlpI Lipoprotein NlpI, 95.4 1.2 2.6E-05 36.6 14.1 85 102-187 77-162 (297)
247 COG4105 ComL DNA uptake lipopr 95.4 1.5 3.2E-05 37.3 20.8 178 200-399 41-234 (254)
248 KOG1464 COP9 signalosome, subu 95.4 1.5 3.3E-05 37.3 21.0 188 207-395 41-257 (440)
249 PF04053 Coatomer_WDAD: Coatom 95.4 0.48 1E-05 44.7 13.3 27 192-218 346-372 (443)
250 KOG0543 FKBP-type peptidyl-pro 95.4 0.3 6.4E-06 44.1 11.2 61 195-257 259-319 (397)
251 COG4649 Uncharacterized protei 95.3 1.1 2.3E-05 35.4 12.9 133 54-187 58-196 (221)
252 PF09205 DUF1955: Domain of un 95.3 0.85 1.8E-05 34.1 14.4 63 302-365 89-151 (161)
253 KOG2610 Uncharacterized conser 95.3 0.88 1.9E-05 40.0 13.3 115 242-359 116-234 (491)
254 KOG2280 Vacuolar assembly/sort 95.2 3.6 7.9E-05 40.5 32.6 106 335-465 685-790 (829)
255 PF09613 HrpB1_HrpK: Bacterial 95.2 1 2.2E-05 35.3 12.2 52 102-153 22-74 (160)
256 smart00299 CLH Clathrin heavy 95.2 1.1 2.5E-05 34.7 15.6 82 235-324 13-94 (140)
257 KOG4555 TPR repeat-containing 95.2 0.74 1.6E-05 34.3 10.7 91 202-294 52-145 (175)
258 PF04184 ST7: ST7 protein; In 95.1 2.9 6.2E-05 39.2 16.8 60 303-362 263-323 (539)
259 PRK11906 transcriptional regul 95.1 2.9 6.3E-05 39.0 18.2 81 352-441 322-403 (458)
260 PF13428 TPR_14: Tetratricopep 95.0 0.11 2.3E-06 30.7 5.4 36 196-233 4-39 (44)
261 COG4649 Uncharacterized protei 95.0 1.4 3E-05 34.8 13.2 124 204-327 69-195 (221)
262 KOG1941 Acetylcholine receptor 95.0 0.55 1.2E-05 41.6 11.4 224 67-290 18-272 (518)
263 PF13512 TPR_18: Tetratricopep 95.0 1.2 2.7E-05 34.1 12.9 74 237-310 18-93 (142)
264 KOG1258 mRNA processing protei 94.9 3.8 8.1E-05 39.3 29.4 351 54-431 44-421 (577)
265 KOG1585 Protein required for f 94.8 2.1 4.6E-05 36.0 15.9 203 161-391 34-249 (308)
266 PF08631 SPO22: Meiosis protei 94.8 2.8 6E-05 37.1 26.8 227 204-437 4-273 (278)
267 PF13170 DUF4003: Protein of u 94.6 3.1 6.8E-05 37.0 20.1 129 246-376 79-224 (297)
268 PF04184 ST7: ST7 protein; In 94.5 4.3 9.4E-05 38.1 17.8 112 277-399 213-325 (539)
269 KOG1920 IkappaB kinase complex 94.4 7.7 0.00017 40.6 28.0 106 304-435 944-1051(1265)
270 PF09205 DUF1955: Domain of un 94.2 1.7 3.7E-05 32.6 15.5 136 240-400 13-151 (161)
271 KOG4234 TPR repeat-containing 94.2 1.6 3.5E-05 35.4 11.4 97 344-450 105-207 (271)
272 COG0457 NrfG FOG: TPR repeat [ 94.2 3 6.6E-05 35.3 30.0 204 193-399 59-266 (291)
273 KOG3941 Intermediate in Toll s 94.2 0.57 1.2E-05 40.1 9.4 105 156-280 65-174 (406)
274 COG2976 Uncharacterized protei 94.1 2.7 5.8E-05 34.1 13.9 91 340-441 95-190 (207)
275 KOG1941 Acetylcholine receptor 94.0 4.3 9.4E-05 36.3 17.4 127 270-396 128-273 (518)
276 COG3629 DnrI DNA-binding trans 94.0 0.63 1.4E-05 40.4 9.7 77 410-487 153-236 (280)
277 COG3629 DnrI DNA-binding trans 94.0 0.93 2E-05 39.4 10.6 78 194-273 154-236 (280)
278 PF13170 DUF4003: Protein of u 93.9 4.5 9.7E-05 36.0 17.1 22 282-303 200-221 (297)
279 PF02259 FAT: FAT domain; Int 93.8 5.3 0.00012 36.8 24.6 66 227-292 144-212 (352)
280 PRK11906 transcriptional regul 93.8 3.7 8E-05 38.3 14.6 126 350-483 274-410 (458)
281 PF13431 TPR_17: Tetratricopep 93.8 0.09 1.9E-06 28.9 2.8 31 433-464 2-32 (34)
282 KOG2114 Vacuolar assembly/sort 93.6 8.7 0.00019 38.6 25.9 76 375-460 711-786 (933)
283 KOG1585 Protein required for f 93.6 3.9 8.4E-05 34.5 15.5 206 92-322 33-250 (308)
284 PF02284 COX5A: Cytochrome c o 93.6 1.9 4E-05 30.6 9.5 62 387-455 28-89 (108)
285 PF02259 FAT: FAT domain; Int 93.5 6.1 0.00013 36.4 23.0 125 333-458 145-305 (352)
286 PF10602 RPN7: 26S proteasome 93.5 2.6 5.6E-05 34.2 12.0 63 230-292 37-101 (177)
287 KOG1550 Extracellular protein 93.3 9.2 0.0002 37.8 19.9 147 209-364 228-394 (552)
288 PF07035 Mic1: Colon cancer-as 93.3 3.4 7.4E-05 32.9 14.8 132 181-327 17-148 (167)
289 PF09613 HrpB1_HrpK: Bacterial 93.3 3.3 7E-05 32.6 12.9 52 346-399 22-74 (160)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 93.2 0.86 1.9E-05 31.9 7.3 61 387-454 25-85 (103)
291 PF04097 Nic96: Nup93/Nic96; 93.2 10 0.00022 38.0 17.9 82 36-118 80-180 (613)
292 PF07719 TPR_2: Tetratricopept 93.1 0.36 7.8E-06 26.2 4.8 31 411-441 2-32 (34)
293 PF00637 Clathrin: Region in C 93.0 0.0054 1.2E-07 48.0 -4.1 129 60-208 12-140 (143)
294 PF00515 TPR_1: Tetratricopept 93.0 0.35 7.7E-06 26.4 4.5 31 411-441 2-32 (34)
295 PF13176 TPR_7: Tetratricopept 92.9 0.26 5.6E-06 27.5 3.9 27 412-438 1-27 (36)
296 PF13431 TPR_17: Tetratricopep 92.7 0.17 3.7E-06 27.8 2.9 31 217-249 3-33 (34)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 92.6 0.98 2.1E-05 31.6 7.0 59 176-236 25-83 (103)
298 COG4785 NlpI Lipoprotein NlpI, 92.4 5.6 0.00012 32.9 16.7 166 264-441 99-268 (297)
299 PF13176 TPR_7: Tetratricopept 92.2 0.41 8.8E-06 26.7 4.1 26 125-150 1-26 (36)
300 COG2909 MalT ATP-dependent tra 92.2 15 0.00032 37.4 24.1 229 204-435 426-684 (894)
301 KOG4648 Uncharacterized conser 92.2 0.54 1.2E-05 41.3 6.6 95 377-480 105-200 (536)
302 PF10602 RPN7: 26S proteasome 92.1 3.6 7.7E-05 33.4 11.1 94 195-291 38-140 (177)
303 PF07035 Mic1: Colon cancer-as 92.1 5.2 0.00011 31.9 16.0 30 216-246 17-46 (167)
304 KOG2610 Uncharacterized conser 92.0 8.4 0.00018 34.2 21.9 151 135-289 115-272 (491)
305 PF02284 COX5A: Cytochrome c o 92.0 0.92 2E-05 32.1 6.3 60 176-237 28-87 (108)
306 KOG1920 IkappaB kinase complex 91.9 19 0.00041 38.0 24.4 134 278-438 894-1027(1265)
307 COG3947 Response regulator con 91.7 6.9 0.00015 34.0 12.3 59 232-291 282-340 (361)
308 COG3947 Response regulator con 91.5 8.7 0.00019 33.4 15.6 72 412-484 281-359 (361)
309 KOG4234 TPR repeat-containing 91.5 1.4 3.1E-05 35.6 7.7 100 377-479 103-202 (271)
310 KOG0276 Vesicle coat complex C 91.4 7.4 0.00016 37.5 13.3 151 66-255 597-747 (794)
311 KOG4570 Uncharacterized conser 91.1 4.5 9.8E-05 35.4 10.7 50 349-398 115-164 (418)
312 KOG4570 Uncharacterized conser 91.0 4.8 0.0001 35.3 10.8 136 225-363 16-164 (418)
313 KOG0890 Protein kinase of the 90.8 36 0.00077 39.1 28.0 314 62-399 1390-1732(2382)
314 PF13929 mRNA_stabil: mRNA sta 90.8 11 0.00023 33.0 17.0 133 106-239 144-288 (292)
315 PF00515 TPR_1: Tetratricopept 90.6 0.94 2E-05 24.6 4.5 30 370-399 2-31 (34)
316 PF10345 Cohesin_load: Cohesin 90.5 21 0.00045 35.9 31.1 370 62-438 107-605 (608)
317 PRK15180 Vi polysaccharide bio 90.1 2.3 4.9E-05 39.5 8.7 89 309-399 333-421 (831)
318 COG2976 Uncharacterized protei 89.8 9.6 0.00021 31.1 12.3 90 200-294 96-189 (207)
319 PF07719 TPR_2: Tetratricopept 89.6 1.3 2.7E-05 24.0 4.5 29 371-399 3-31 (34)
320 KOG4648 Uncharacterized conser 89.4 2.4 5.1E-05 37.5 7.9 53 308-361 106-158 (536)
321 KOG2066 Vacuolar assembly/sort 89.2 26 0.00056 35.2 26.5 25 232-256 508-532 (846)
322 PF00637 Clathrin: Region in C 89.2 0.26 5.6E-06 38.5 2.0 53 236-288 14-66 (143)
323 KOG0890 Protein kinase of the 89.2 48 0.001 38.2 24.4 319 97-441 1390-1733(2382)
324 TIGR02561 HrpB1_HrpK type III 89.2 8.8 0.00019 29.7 10.8 49 103-153 23-74 (153)
325 PF13181 TPR_8: Tetratricopept 88.9 1 2.2E-05 24.4 3.9 31 411-441 2-32 (34)
326 KOG0276 Vesicle coat complex C 88.6 5.6 0.00012 38.3 10.2 97 170-288 649-745 (794)
327 PRK09687 putative lyase; Provi 88.6 17 0.00037 32.2 26.3 233 191-455 35-277 (280)
328 COG4455 ImpE Protein of avirul 88.1 2.7 5.9E-05 34.7 7.0 74 58-132 4-81 (273)
329 PF07575 Nucleopor_Nup85: Nup8 88.0 30 0.00065 34.4 17.1 77 319-397 390-466 (566)
330 PF04097 Nic96: Nup93/Nic96; 87.8 32 0.0007 34.5 19.0 29 300-328 325-356 (613)
331 KOG1550 Extracellular protein 87.7 31 0.00067 34.2 22.5 152 133-294 259-427 (552)
332 PF13929 mRNA_stabil: mRNA sta 87.5 19 0.00041 31.5 22.9 63 262-324 200-263 (292)
333 PRK11619 lytic murein transgly 87.4 35 0.00075 34.5 28.8 315 62-396 40-373 (644)
334 TIGR02561 HrpB1_HrpK type III 87.0 13 0.00027 28.9 12.3 51 347-399 23-74 (153)
335 KOG2063 Vacuolar assembly/sort 86.8 42 0.00092 34.8 22.9 116 343-458 600-745 (877)
336 PF13374 TPR_10: Tetratricopep 86.6 2.2 4.7E-05 24.3 4.5 26 231-256 4-29 (42)
337 PF13374 TPR_10: Tetratricopep 86.4 2.2 4.7E-05 24.3 4.4 29 370-398 3-31 (42)
338 PF06552 TOM20_plant: Plant sp 86.0 13 0.00029 29.8 9.6 63 385-457 51-125 (186)
339 PF10345 Cohesin_load: Cohesin 85.9 41 0.0009 33.9 34.3 164 56-220 60-252 (608)
340 PF11207 DUF2989: Protein of u 85.3 19 0.00041 29.7 10.4 77 350-430 122-198 (203)
341 PF13174 TPR_6: Tetratricopept 85.2 2.1 4.5E-05 22.8 3.7 29 413-441 3-31 (33)
342 COG1747 Uncharacterized N-term 85.1 36 0.00078 32.5 25.1 97 225-326 62-158 (711)
343 PF13174 TPR_6: Tetratricopept 84.5 2 4.4E-05 22.9 3.5 26 374-399 5-30 (33)
344 PF13181 TPR_8: Tetratricopept 83.0 3.1 6.7E-05 22.4 3.8 29 371-399 3-31 (34)
345 KOG4507 Uncharacterized conser 82.8 9.7 0.00021 36.6 8.8 118 225-344 603-720 (886)
346 KOG4507 Uncharacterized conser 82.5 8.2 0.00018 37.1 8.2 105 345-457 618-722 (886)
347 KOG4077 Cytochrome c oxidase, 82.2 10 0.00022 28.3 6.8 58 177-236 68-125 (149)
348 TIGR03504 FimV_Cterm FimV C-te 81.5 4.1 8.9E-05 23.9 3.9 24 199-222 5-28 (44)
349 KOG4077 Cytochrome c oxidase, 80.9 21 0.00046 26.7 9.0 71 47-118 40-112 (149)
350 PF06552 TOM20_plant: Plant sp 80.6 9.5 0.00021 30.7 6.9 97 385-489 7-124 (186)
351 KOG1586 Protein required for f 80.4 35 0.00076 28.9 18.8 58 207-264 128-189 (288)
352 TIGR03504 FimV_Cterm FimV C-te 79.7 4.9 0.00011 23.6 3.9 24 235-258 5-28 (44)
353 PF07721 TPR_4: Tetratricopept 79.7 3.3 7.1E-05 20.9 2.8 18 129-146 7-24 (26)
354 PRK10941 hypothetical protein; 78.8 43 0.00093 29.4 11.1 77 373-457 185-263 (269)
355 KOG1586 Protein required for f 78.7 40 0.00086 28.6 22.0 27 270-296 160-186 (288)
356 COG5159 RPN6 26S proteasome re 78.7 45 0.00096 29.2 11.2 24 338-361 129-152 (421)
357 PRK09687 putative lyase; Provi 78.4 48 0.001 29.4 27.6 234 156-421 35-278 (280)
358 PF11207 DUF2989: Protein of u 78.3 37 0.0008 28.0 16.7 73 175-248 123-197 (203)
359 smart00028 TPR Tetratricopepti 78.0 4.8 0.00011 20.5 3.6 30 412-441 3-32 (34)
360 PF07163 Pex26: Pex26 protein; 77.8 41 0.00088 29.4 10.1 86 200-287 90-181 (309)
361 COG2909 MalT ATP-dependent tra 76.2 1E+02 0.0022 31.9 30.2 265 129-394 366-684 (894)
362 PHA02875 ankyrin repeat protei 76.2 72 0.0016 30.2 15.6 16 131-146 73-88 (413)
363 PF14853 Fis1_TPR_C: Fis1 C-te 76.0 15 0.00032 22.7 5.4 34 414-448 5-38 (53)
364 cd08819 CARD_MDA5_2 Caspase ac 75.1 25 0.00054 24.4 7.1 65 39-109 21-85 (88)
365 PF07163 Pex26: Pex26 protein; 74.9 51 0.0011 28.8 9.9 89 234-322 88-181 (309)
366 COG1747 Uncharacterized N-term 74.8 82 0.0018 30.2 24.9 179 156-343 64-248 (711)
367 PF10579 Rapsyn_N: Rapsyn N-te 74.7 12 0.00026 25.3 5.0 47 346-392 18-66 (80)
368 PRK10941 hypothetical protein; 74.5 28 0.00061 30.5 8.8 54 412-466 183-236 (269)
369 PF09477 Type_III_YscG: Bacter 73.8 31 0.00068 25.0 10.3 83 67-154 18-100 (116)
370 PRK13184 pknD serine/threonine 73.6 1.3E+02 0.0028 32.0 25.4 324 63-397 483-868 (932)
371 PF13934 ELYS: Nuclear pore co 73.4 57 0.0012 27.8 12.7 105 93-206 79-185 (226)
372 PF08424 NRDE-2: NRDE-2, neces 73.2 73 0.0016 28.9 16.5 28 338-365 158-185 (321)
373 smart00386 HAT HAT (Half-A-TPR 72.7 10 0.00022 19.8 3.9 30 424-454 1-30 (33)
374 KOG0376 Serine-threonine phosp 72.6 5.3 0.00011 37.3 4.1 103 377-488 12-115 (476)
375 KOG0686 COP9 signalosome, subu 72.5 82 0.0018 29.2 12.5 60 92-151 152-215 (466)
376 KOG4279 Serine/threonine prote 72.2 77 0.0017 32.0 11.6 210 18-233 159-404 (1226)
377 PHA02875 ankyrin repeat protei 71.8 92 0.002 29.5 16.2 13 102-114 11-23 (413)
378 KOG4642 Chaperone-dependent E3 71.3 51 0.0011 28.1 8.9 78 379-465 20-98 (284)
379 PF10579 Rapsyn_N: Rapsyn N-te 70.7 21 0.00046 24.1 5.5 52 60-112 12-65 (80)
380 KOG4642 Chaperone-dependent E3 70.1 69 0.0015 27.3 10.9 116 239-358 20-141 (284)
381 PF13762 MNE1: Mitochondrial s 69.9 47 0.001 25.8 8.0 82 125-206 41-128 (145)
382 PRK15180 Vi polysaccharide bio 68.9 1.1E+02 0.0023 29.1 27.5 125 60-187 294-420 (831)
383 COG0735 Fur Fe2+/Zn2+ uptake r 68.5 38 0.00082 26.4 7.5 66 40-106 6-71 (145)
384 COG5108 RPO41 Mitochondrial DN 67.3 85 0.0019 31.2 10.7 91 304-397 33-131 (1117)
385 PF11846 DUF3366: Domain of un 66.9 22 0.00048 29.3 6.4 47 387-441 129-175 (193)
386 KOG3636 Uncharacterized conser 66.9 1.1E+02 0.0024 28.6 16.5 182 92-276 57-272 (669)
387 PF14689 SPOB_a: Sensor_kinase 66.7 18 0.00038 23.3 4.5 30 368-397 22-51 (62)
388 COG0735 Fur Fe2+/Zn2+ uptake r 65.9 48 0.001 25.9 7.6 61 252-313 9-69 (145)
389 COG4455 ImpE Protein of avirul 65.5 82 0.0018 26.5 15.0 130 301-441 3-136 (273)
390 TIGR02508 type_III_yscG type I 65.4 48 0.001 23.8 10.1 88 68-161 18-105 (115)
391 PF11846 DUF3366: Domain of un 65.3 33 0.00072 28.3 7.2 33 225-257 140-172 (193)
392 cd00280 TRFH Telomeric Repeat 64.8 56 0.0012 26.5 7.6 23 376-398 118-140 (200)
393 PF14689 SPOB_a: Sensor_kinase 64.1 23 0.00051 22.7 4.7 46 385-438 6-51 (62)
394 COG5187 RPN7 26S proteasome re 63.0 1.1E+02 0.0023 27.0 13.4 101 225-327 111-220 (412)
395 COG5159 RPN6 26S proteasome re 61.9 1.1E+02 0.0024 26.9 16.2 199 59-257 7-234 (421)
396 cd08819 CARD_MDA5_2 Caspase ac 61.6 52 0.0011 22.9 6.9 66 353-430 21-86 (88)
397 KOG0991 Replication factor C, 60.4 1.1E+02 0.0023 26.2 14.4 98 363-465 188-291 (333)
398 COG5108 RPO41 Mitochondrial DN 60.3 64 0.0014 32.0 8.6 88 95-185 33-130 (1117)
399 PRK14136 recX recombination re 60.2 1.3E+02 0.0028 26.9 12.8 63 22-87 179-241 (309)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 59.7 74 0.0016 24.1 8.4 44 387-435 81-124 (126)
401 PF08424 NRDE-2: NRDE-2, neces 59.7 1.4E+02 0.003 27.2 18.3 123 317-441 49-185 (321)
402 PRK11639 zinc uptake transcrip 59.6 60 0.0013 26.2 7.4 61 46-107 17-77 (169)
403 PF11663 Toxin_YhaV: Toxin wit 59.2 17 0.00038 27.5 3.8 30 171-202 108-137 (140)
404 KOG3364 Membrane protein invol 59.1 80 0.0017 24.2 9.9 76 366-447 29-107 (149)
405 KOG2471 TPR repeat-containing 59.0 1.7E+02 0.0037 28.0 13.8 117 343-460 249-384 (696)
406 KOG0687 26S proteasome regulat 57.3 1.5E+02 0.0032 26.8 16.3 135 189-327 66-209 (393)
407 PF12862 Apc5: Anaphase-promot 57.2 57 0.0012 23.0 6.2 53 66-118 9-69 (94)
408 KOG0551 Hsp90 co-chaperone CNS 56.1 1.4E+02 0.0031 26.9 9.3 92 337-436 84-179 (390)
409 KOG2659 LisH motif-containing 55.9 1.3E+02 0.0027 25.6 9.0 64 53-118 24-92 (228)
410 PRK10564 maltose regulon perip 55.6 23 0.00049 31.3 4.6 36 121-156 254-290 (303)
411 PF09454 Vps23_core: Vps23 cor 55.6 40 0.00086 21.9 4.6 51 406-457 4-54 (65)
412 PF15297 CKAP2_C: Cytoskeleton 55.5 1.7E+02 0.0036 26.8 9.9 64 385-456 119-186 (353)
413 PF10255 Paf67: RNA polymerase 55.4 1.7E+02 0.0037 27.6 10.3 59 127-185 126-191 (404)
414 KOG2062 26S proteasome regulat 55.4 2.4E+02 0.0053 28.7 25.9 174 73-257 41-238 (929)
415 COG2137 OraA Uncharacterized p 55.1 1.1E+02 0.0024 24.7 10.5 127 20-150 35-165 (174)
416 PF12862 Apc5: Anaphase-promot 53.5 77 0.0017 22.3 7.2 74 379-455 8-87 (94)
417 COG4976 Predicted methyltransf 53.4 30 0.00065 29.2 4.6 60 378-446 4-64 (287)
418 COG2178 Predicted RNA-binding 53.3 1.3E+02 0.0028 24.8 9.2 17 168-184 39-55 (204)
419 PF03745 DUF309: Domain of unk 52.9 56 0.0012 21.0 5.0 48 65-112 9-61 (62)
420 PF11848 DUF3368: Domain of un 52.9 49 0.0011 19.9 5.2 32 345-376 13-44 (48)
421 KOG4567 GTPase-activating prot 52.3 92 0.002 27.7 7.5 68 111-183 264-343 (370)
422 PF11663 Toxin_YhaV: Toxin wit 51.9 17 0.00037 27.6 2.8 20 244-263 110-129 (140)
423 PF10255 Paf67: RNA polymerase 51.7 2E+02 0.0043 27.1 10.2 61 196-256 125-191 (404)
424 KOG2422 Uncharacterized conser 51.7 2.5E+02 0.0054 27.7 11.4 77 62-138 349-431 (665)
425 KOG3807 Predicted membrane pro 51.7 1.2E+02 0.0025 27.4 8.1 55 199-255 281-337 (556)
426 PF11768 DUF3312: Protein of u 51.7 1.2E+02 0.0026 29.5 8.8 24 58-81 411-434 (545)
427 PF09868 DUF2095: Uncharacteri 50.7 60 0.0013 23.7 5.2 40 61-101 67-106 (128)
428 KOG2659 LisH motif-containing 50.7 1.6E+02 0.0034 25.0 8.5 17 168-184 74-90 (228)
429 PF04762 IKI3: IKI3 family; I 50.4 2.4E+02 0.0051 30.3 11.7 21 59-79 698-718 (928)
430 PF04762 IKI3: IKI3 family; I 50.3 3.5E+02 0.0077 29.1 16.7 25 162-186 816-842 (928)
431 PF11817 Foie-gras_1: Foie gra 49.9 64 0.0014 27.9 6.6 57 163-219 183-244 (247)
432 PRK10564 maltose regulon perip 49.9 57 0.0012 28.9 6.0 43 406-448 252-295 (303)
433 PF05944 Phage_term_smal: Phag 49.6 90 0.0019 23.9 6.4 52 36-87 29-80 (132)
434 PF14853 Fis1_TPR_C: Fis1 C-te 49.4 61 0.0013 20.0 6.4 37 374-418 6-42 (53)
435 PF09670 Cas_Cas02710: CRISPR- 49.0 1.9E+02 0.0041 27.1 9.9 56 131-187 139-198 (379)
436 PRK09462 fur ferric uptake reg 48.3 1.2E+02 0.0027 23.6 7.4 61 45-106 7-68 (148)
437 PF13762 MNE1: Mitochondrial s 48.2 1.3E+02 0.0028 23.5 10.4 79 268-346 43-127 (145)
438 KOG1308 Hsp70-interacting prot 48.2 15 0.00033 32.8 2.4 90 346-446 126-218 (377)
439 PRK00117 recX recombination re 48.0 1.4E+02 0.003 23.6 13.1 67 20-88 26-92 (157)
440 PF08311 Mad3_BUB1_I: Mad3/BUB 48.0 1.2E+02 0.0026 22.9 8.4 41 108-148 81-124 (126)
441 KOG2471 TPR repeat-containing 47.8 1.9E+02 0.0042 27.7 9.3 108 132-242 249-382 (696)
442 PF13877 RPAP3_C: Potential Mo 46.4 68 0.0015 22.6 5.2 16 96-111 71-86 (94)
443 KOG1464 COP9 signalosome, subu 45.5 2.1E+02 0.0045 25.0 21.8 171 85-256 21-218 (440)
444 KOG2422 Uncharacterized conser 45.3 3.2E+02 0.0068 27.0 18.9 157 206-362 251-447 (665)
445 PF00244 14-3-3: 14-3-3 protei 45.2 2E+02 0.0043 24.7 9.9 62 57-118 3-65 (236)
446 smart00804 TAP_C C-terminal do 45.2 35 0.00076 22.0 3.1 22 208-229 40-61 (63)
447 PF10366 Vps39_1: Vacuolar sor 45.1 1.2E+02 0.0026 22.2 7.9 26 267-292 42-67 (108)
448 KOG4567 GTPase-activating prot 44.5 2.4E+02 0.0051 25.3 10.0 71 178-254 263-343 (370)
449 PF11838 ERAP1_C: ERAP1-like C 44.3 2.4E+02 0.0053 25.4 19.0 82 209-293 146-230 (324)
450 KOG2300 Uncharacterized conser 43.9 3.1E+02 0.0066 26.5 32.4 146 310-460 334-500 (629)
451 PF14561 TPR_20: Tetratricopep 43.7 1.1E+02 0.0024 21.4 9.0 34 225-258 18-51 (90)
452 PF11817 Foie-gras_1: Foie gra 43.4 1.3E+02 0.0027 26.1 7.4 63 373-436 182-244 (247)
453 PRK11639 zinc uptake transcrip 43.4 1.7E+02 0.0038 23.5 7.8 43 341-383 32-74 (169)
454 PF09986 DUF2225: Uncharacteri 43.2 2E+02 0.0044 24.2 11.6 94 347-441 90-196 (214)
455 PF10366 Vps39_1: Vacuolar sor 42.8 1.3E+02 0.0029 22.0 7.9 49 412-460 41-94 (108)
456 KOG0292 Vesicle coat complex C 42.7 1E+02 0.0023 31.8 7.2 132 97-257 650-781 (1202)
457 COG4259 Uncharacterized protei 42.7 1.2E+02 0.0027 21.7 5.6 54 428-481 55-108 (121)
458 KOG3677 RNA polymerase I-assoc 42.5 1.7E+02 0.0038 27.3 8.0 58 127-184 239-298 (525)
459 PRK13342 recombination factor 42.5 3.1E+02 0.0067 26.1 17.3 21 172-192 244-264 (413)
460 PF04910 Tcf25: Transcriptiona 42.2 2.9E+02 0.0062 25.7 21.6 103 225-327 36-167 (360)
461 COG4003 Uncharacterized protei 42.1 1E+02 0.0022 21.0 4.9 29 62-91 38-66 (98)
462 PF09670 Cas_Cas02710: CRISPR- 41.7 3E+02 0.0065 25.8 11.8 55 273-328 140-198 (379)
463 KOG0376 Serine-threonine phosp 41.6 73 0.0016 30.2 5.7 104 272-379 12-115 (476)
464 PF00244 14-3-3: 14-3-3 protei 41.6 2.3E+02 0.005 24.4 12.1 49 351-399 143-199 (236)
465 cd07153 Fur_like Ferric uptake 41.6 78 0.0017 23.3 5.2 39 67-105 12-50 (116)
466 PRK13342 recombination factor 41.3 3.2E+02 0.0069 26.0 16.7 30 242-271 243-272 (413)
467 PF02184 HAT: HAT (Half-A-TPR) 41.2 60 0.0013 17.6 3.4 26 384-417 2-27 (32)
468 PF15297 CKAP2_C: Cytoskeleton 41.1 2.1E+02 0.0046 26.1 8.2 64 106-169 119-186 (353)
469 cd00280 TRFH Telomeric Repeat 40.7 2E+02 0.0044 23.5 13.2 62 106-170 85-155 (200)
470 PF01475 FUR: Ferric uptake re 40.6 67 0.0015 23.9 4.7 45 61-105 13-57 (120)
471 PF11838 ERAP1_C: ERAP1-like C 40.6 2.8E+02 0.006 25.0 18.9 109 174-288 146-261 (324)
472 PRK14956 DNA polymerase III su 40.5 2.3E+02 0.005 27.5 9.0 106 72-199 183-289 (484)
473 TIGR02508 type_III_yscG type I 40.3 1.4E+02 0.003 21.5 7.9 52 342-399 47-98 (115)
474 PF04190 DUF410: Protein of un 40.1 2.6E+02 0.0056 24.5 18.5 20 379-398 151-170 (260)
475 PRK13456 DNA protection protei 39.9 2.1E+02 0.0044 23.5 7.3 79 22-102 69-150 (186)
476 PF04910 Tcf25: Transcriptiona 39.6 3.2E+02 0.0069 25.4 17.5 57 341-397 110-167 (360)
477 KOG1308 Hsp70-interacting prot 39.2 21 0.00046 32.0 1.9 119 309-438 124-243 (377)
478 PRK09857 putative transposase; 38.5 2.7E+02 0.0058 25.0 8.7 64 304-368 211-274 (292)
479 PRK09462 fur ferric uptake reg 38.4 1.9E+02 0.0041 22.6 7.6 59 255-314 8-67 (148)
480 PHA03100 ankyrin repeat protei 38.2 3.8E+02 0.0082 25.9 14.3 145 62-216 39-196 (480)
481 KOG2034 Vacuolar sorting prote 38.2 5E+02 0.011 27.3 26.4 51 96-150 364-416 (911)
482 COG4941 Predicted RNA polymera 36.1 3.4E+02 0.0074 24.8 10.1 28 71-99 272-299 (415)
483 cd07153 Fur_like Ferric uptake 35.6 1.6E+02 0.0035 21.6 6.1 43 165-207 7-49 (116)
484 PF09454 Vps23_core: Vps23 cor 35.5 1E+02 0.0022 20.1 4.2 49 191-241 6-54 (65)
485 PF01475 FUR: Ferric uptake re 34.9 99 0.0021 23.0 4.8 47 414-460 11-57 (120)
486 PHA02537 M terminase endonucle 34.2 3E+02 0.0065 23.6 9.5 37 411-447 170-215 (230)
487 KOG4521 Nuclear pore complex, 34.0 6.7E+02 0.014 27.5 12.9 176 304-488 925-1147(1480)
488 cd08789 CARD_IPS-1_RIG-I Caspa 33.4 1.6E+02 0.0036 20.3 6.5 54 52-110 29-82 (84)
489 PHA02537 M terminase endonucle 33.0 3E+02 0.0065 23.6 7.6 50 37-86 65-114 (230)
490 PF13934 ELYS: Nuclear pore co 31.4 3.3E+02 0.0072 23.2 16.3 107 301-424 78-186 (226)
491 PRK09857 putative transposase; 31.3 2.7E+02 0.0059 24.9 7.6 29 164-192 246-274 (292)
492 KOG2300 Uncharacterized conser 31.0 5E+02 0.011 25.2 32.8 363 68-438 60-513 (629)
493 KOG2396 HAT (Half-A-TPR) repea 30.9 5.1E+02 0.011 25.2 36.1 73 53-126 103-177 (568)
494 PF02847 MA3: MA3 domain; Int 30.6 1.7E+02 0.0038 21.3 5.5 21 235-255 8-28 (113)
495 COG5187 RPN7 26S proteasome re 30.6 3.9E+02 0.0085 23.8 12.6 99 333-437 114-219 (412)
496 cd08812 CARD_RIG-I_like Caspas 30.4 1.9E+02 0.0042 20.2 7.4 66 37-109 19-85 (88)
497 KOG1839 Uncharacterized protei 30.4 7.9E+02 0.017 27.3 11.5 100 122-221 972-1085(1236)
498 PRK11619 lytic murein transgly 30.3 6.1E+02 0.013 26.0 41.1 51 376-435 414-464 (644)
499 KOG4814 Uncharacterized conser 30.0 3.8E+02 0.0083 26.9 8.5 77 381-460 366-443 (872)
500 COG0790 FOG: TPR repeat, SEL1 30.0 3.9E+02 0.0085 23.6 22.7 199 172-384 55-287 (292)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.2e-66 Score=513.76 Aligned_cols=452 Identities=16% Similarity=0.174 Sum_probs=425.8
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcC-CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKK-RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLV 100 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (490)
...++.++.+.| ....+.++++.|.+.|. .++...+..++..|.+.|.+++|+.+++.|.. |+..+|+.++.+|
T Consensus 373 ~~~~y~~l~r~G-~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 373 YIDAYNRLLRDG-RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 446777777766 67788999999988885 45666777889999999999999999999864 8999999999999
Q ss_pred HhhCCHHHHHHHHhhcCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHH
Q 011226 101 AKVQGIDAAENYFVDLPE--TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 101 ~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 178 (490)
++.|+++.|.++|+.|.+ ..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999988 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR--DGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .| +.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 45 89999999999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 011226 257 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 336 (490)
Q Consensus 257 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (490)
+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.| +.||..+|+.+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G------i~Pd~~Ty~sL 760 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG------LCPNTITYSIL 760 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 66999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCC---------------------CcHHHHHHHhh
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA----AGR---------------------TSPVMLRRLKM 471 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~---------------------~~~~~~~~m~~ 471 (490)
+.+|++.|+++.|.+++++|.+.|..||..+|+.|+..|.+ +++ .+..++++|..
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876432 111 24567999999
Q ss_pred CCCCCCHHHHHHHH
Q 011226 472 EKVEVSEASKKLLE 485 (490)
Q Consensus 472 ~~~~p~~~~~~~l~ 485 (490)
.|+.||..|+..+.
T Consensus 841 ~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 841 AGTLPTMEVLSQVL 854 (1060)
T ss_pred CCCCCCHHHHHHHH
Confidence 99999999998777
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.4e-65 Score=506.13 Aligned_cols=431 Identities=15% Similarity=0.176 Sum_probs=415.0
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM-NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGS 128 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 128 (490)
....+...+..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. ||..+|+.
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~ 442 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNM 442 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHH
Confidence 3345678889999999999999999999999998885 56777888999999999999999999999987 99999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN--RNAHRDLSAYQFLITLYGQTGNLSEVYRI 286 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 286 (490)
+++|.++|+.|.+.| +.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 523 ~eeAl~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 523 VAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998 999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 011226 287 WRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD 366 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (490)
|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 367 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 367 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
||..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.++|++|.+.|..||..
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999998 66999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 447 VFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 447 ~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
+|+.++.+|++.|+ .+..++..|.+.|+.||..++..+.+.|.
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999 67788999999999999999998887763
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-60 Score=469.58 Aligned_cols=441 Identities=14% Similarity=0.140 Sum_probs=346.2
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhc-CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSK-KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA 101 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (490)
..++..+...+ ....+..+++.+...+ ..++..+|..++.++.+.++++.|.+++..|.+.|+.||..+|+.++.+|+
T Consensus 91 ~~~i~~l~~~g-~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 91 CSQIEKLVACG-RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 34455555555 5667777888877654 678999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|+++.|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++...|..+.+.+++
T Consensus 170 k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred cCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999987 8999999999999999999999999999999999898888888888888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 888877888888888888888888888888888887773 356777888888888888888888888888777777
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
||..||+.++.+|++.|++++|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|.+ ||..+||.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 888888888888888888888888888887777777777888888888888888888887777743 5777788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCC----------------
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID-TGRGDGG---------------- 404 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~---------------- 404 (490)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 88888888888888888887777778888888888888888888888888877765 3543321
Q ss_pred ----------CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhC
Q 011226 405 ----------KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKME 472 (490)
Q Consensus 405 ----------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 472 (490)
.+.|+..+|++|+.+|...|+++.|..+++++.+.+| .+..+|..|+++|++.|+ .+..+++.|+..
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 0345555566666666666666666666666555555 455666666666666666 344456666666
Q ss_pred CCCC
Q 011226 473 KVEV 476 (490)
Q Consensus 473 ~~~p 476 (490)
|+.+
T Consensus 558 g~~k 561 (697)
T PLN03081 558 GLSM 561 (697)
T ss_pred CCcc
Confidence 6643
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-60 Score=479.03 Aligned_cols=453 Identities=13% Similarity=0.098 Sum_probs=364.6
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA 101 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (490)
.+.+...+.+.+ ....+..+++.+...|..|+..+|..+++.++..+++..+.+++..+.+.|+.|+..+++.++.+|+
T Consensus 155 ~n~li~~~~~~g-~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 155 WNVLVGGYAKAG-YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 445555555555 4566667777777777777777777777777777777777777777777777788888888899999
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|+++.|.++|+.|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.+.|.+++
T Consensus 234 k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 234 KCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred cCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 99999999999999986 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999884 467788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
||..+|+.++.+|++.|+++.|.++++.|.+.|..|+..+|+.|+.+|++.|++++|.++|+.|.+ +|..+|+.+|
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi 462 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSII 462 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988854 4778899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC----------------
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK---------------- 405 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------- 405 (490)
.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+.+.|..++..
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 999999999999999999876 488899888888888888888888888888887777432210
Q ss_pred --------CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHh-hCCC
Q 011226 406 --------WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLK-MEKV 474 (490)
Q Consensus 406 --------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~-~~~~ 474 (490)
..||..+|+++|.+|++.|+.++|.++|++|.+.|..||..+|+.++.+|.+.|+ .+..+++.|+ ..|+
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 1355555666666666666666666666666666665666666666666666665 3334455665 4466
Q ss_pred CCCHHHHHHHHHh
Q 011226 475 EVSEASKKLLEAI 487 (490)
Q Consensus 475 ~p~~~~~~~l~~~ 487 (490)
.|+..++..+...
T Consensus 622 ~P~~~~y~~lv~~ 634 (857)
T PLN03077 622 TPNLKHYACVVDL 634 (857)
T ss_pred CCchHHHHHHHHH
Confidence 6666555544433
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-58 Score=470.62 Aligned_cols=445 Identities=15% Similarity=0.132 Sum_probs=422.8
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA 101 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (490)
.+.++..+.+.| ....+..+++.+...|.+++..++..+++.+.+.+.++.|.+++..+.+.+..++...++.++..|+
T Consensus 54 ~n~~i~~l~~~g-~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 54 SNSQLRALCSHG-QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 456777777776 6778888999999999999999999999999999999999999999999998899999999999999
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|...+++..+.+++
T Consensus 133 ~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~ 210 (857)
T PLN03077 133 RFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210 (857)
T ss_pred hCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHH
Confidence 99999999999999987 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..|.+.|+.||..+++.|+.+|++.|+++.|.++|++|. .+|..+|++++.+|++.|++++|+++|++|...|+.
T Consensus 211 ~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999985 467889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
||..+|+.++.+|++.|+.+.|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 46889999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 421 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 421 (490)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.| +.|+..+++.|+.+|+
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g------~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG------LISYVVVANALIEMYS 435 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 6699999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 422 QEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 422 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
+.|++++|.++|++|.+ +|..+|+.++.+|++.|+ .+..+++.|.. ++.||..|+..+...|.
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 99999999999999864 788999999999999999 45567899975 69999999999998885
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.3e-59 Score=461.41 Aligned_cols=419 Identities=16% Similarity=0.192 Sum_probs=396.2
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC--CCCCHhHHH
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG-MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE--TSKNHLTYG 127 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~ 127 (490)
...+...++.++..+.+.|++++|+++|++|...+ ..|+..+|+.++.+|++.++++.+.+++..+.. ..||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 33455689999999999999999999999997654 679999999999999999999999999999987 779999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
.++.+|++.|+++.|.++|++|.+ ||..+||+++.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|+..|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
+.+.+.+++..+.+.| ..+|..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++|
T Consensus 239 ~~~~~~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 239 SARAGQQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred cHHHHHHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999964 78999999999999999999999999
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|..||..+|+.|+.+|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964 6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVE 446 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ 446 (490)
|..+|+.+|.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|.+.|.+++|.++|+.|.+ .+..|+..
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEG------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999999999999 679999999999999999999999999999986 68889999
Q ss_pred hHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 447 VFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 447 ~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
+|+.++.+|++.|+..++. +.+++.++.|+..++..|...|.
T Consensus 464 ~y~~li~~l~r~G~~~eA~-~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 464 HYACMIELLGREGLLDEAY-AMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred chHhHHHHHHhcCCHHHHH-HHHHHCCCCCCHHHHHHHHHHHH
Confidence 9999999999999955553 33455689999999999998884
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=3.7e-27 Score=245.74 Aligned_cols=404 Identities=17% Similarity=0.090 Sum_probs=186.5
Q ss_pred ccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhc
Q 011226 37 VSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDL 116 (490)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 116 (490)
..+..+++.+.. ..+.+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+.+
T Consensus 448 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 448 DKALAAAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKV 525 (899)
T ss_pred HHHHHHHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333444444433 223344455555555555555555555555554443 223334444455555555555555555555
Q ss_pred CC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhh
Q 011226 117 PE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT 195 (490)
Q Consensus 117 ~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 195 (490)
.. .+.+..++..+...+.+.|++++|..+++++...+. .+...+..++..+...|++++|..+++.+.+.. +.+..+
T Consensus 526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 603 (899)
T TIGR02917 526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEA 603 (899)
T ss_pred HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 44 223344555555555555555555555555544332 233444445555555555555555555554432 223444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
|..+..++...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|...++++.+... .+..++..++..+.
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 555555555555555555555555443 233444444455555555555555555555444321 23344444444444
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE 355 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 355 (490)
..|++++|..+++.+....+ .+...+..+...+...|++++|...|+.+....+. ..++..++.++...|++++|.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555544444332 12333444444444444555554444444443322 1333344444444444444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 356 LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. .++...+..+...+...|+ .+|...+++
T Consensus 758 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 758 TLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-------PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 444444432 1233344444444444444444444444444443 0223444444444444444 334444444
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 436 LKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+.+..+ .++.++..+..++...|+
T Consensus 829 ~~~~~~-~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 829 ALKLAP-NIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHhhCC-CCcHHHHHHHHHHHHcCC
Confidence 444433 334444444444444444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.7e-26 Score=240.69 Aligned_cols=386 Identities=14% Similarity=0.109 Sum_probs=173.6
Q ss_pred HhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHH
Q 011226 56 WEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYC 134 (490)
Q Consensus 56 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~ 134 (490)
..+..+...+...|++++|.+.++.+...+ +.+..++..+...+.+.|+.++|..+++++.. .+.+...+..++..+.
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 334444444444444445555444444333 22334444444444444444444444444433 2223334444444444
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHH
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAER 214 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 214 (490)
..|++++|.++++.+..... .+...|..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555544444443321 333444444444444444445544444444332 1133334444444444445555555
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 011226 215 VIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (490)
.++++.+. .+.+..++..++..+...|++++|.++++.+...+. .+...+..+...+...|++++|...|+.+...+
T Consensus 657 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 657 SLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 44444443 333444444444444444555555544444444332 233344444444444445555544444444432
Q ss_pred CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011226 295 PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 374 (490)
Q Consensus 295 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 374 (490)
+ +..++..+..++...|++++|.+.+..+.+..+. +...+..+...|...|++++|..+|+++.+... ++...++.
T Consensus 734 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~ 809 (899)
T TIGR02917 734 P--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNN 809 (899)
T ss_pred C--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 2 2233334444444444544444444444443332 344444444444444555555555544444321 23344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
+...+...|+ .+|+.+++++.+... .+..++..+...+...|++++|...++++++.+| .+..++..++.+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 880 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAP-------NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALA 880 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCC-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHH
Confidence 4444444444 444444444444320 1233344444444444455555555555444444 344444444444
Q ss_pred HHhcCC
Q 011226 455 YAAAGR 460 (490)
Q Consensus 455 ~~~~g~ 460 (490)
|.+.|+
T Consensus 881 ~~~~g~ 886 (899)
T TIGR02917 881 LLATGR 886 (899)
T ss_pred HHHcCC
Confidence 444444
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.9e-23 Score=186.81 Aligned_cols=435 Identities=17% Similarity=0.150 Sum_probs=351.8
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC--------------
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK-------------- 88 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-------------- 88 (490)
++.+.+......+......+++.+... +........+.+...+.|++.+|++.....-+++..-
T Consensus 18 ~~~~~~~ld~~~~s~~s~~v~qq~~~t--~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~ 95 (966)
T KOG4626|consen 18 REAFSRKLDQSVSSSGSSSVLQQFNKT--HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQG 95 (966)
T ss_pred HHHHHHHhccCcccccchHHHHHhccC--CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcc
Confidence 345555555555666667777777443 3344557788888889999999998876664433110
Q ss_pred -------------------ChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 89 -------------------TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCKELMTEKAEALLEK 148 (490)
Q Consensus 89 -------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 148 (490)
-..+|..+.+.+-..|++..|+..++.+.+.+| ....|..+..++...|+.+.|.+.|.+
T Consensus 96 ~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 123666677778888888899998888888444 466888888888888999999988888
Q ss_pred HHhCCCCCCcchHH-HHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 011226 149 MKELNLGFSSMPFN-SLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA 226 (490)
Q Consensus 149 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 226 (490)
.++.+ |+..... .+-..+...|+.++|...|.+.++. .|. ...|..|...+-..|+...|++.|++..+. .|
T Consensus 176 alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 176 ALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred HHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 88755 5544333 3334444578888998888888774 333 456788888888999999999999999986 45
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 011226 227 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI 306 (490)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (490)
.-...|..|...|...+.+++|...+.+...... .....+..+...|...|..+-|+..|++..+..+.. ...|+.|.
T Consensus 250 ~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~Nla 327 (966)
T KOG4626|consen 250 NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLA 327 (966)
T ss_pred cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHH
Confidence 5577899999999999999999999998876432 346777788888999999999999999998865542 46899999
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCH
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDM 385 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 385 (490)
.++-..|++.+|.+.+.......+. .....+.|...|...|.+++|..+|....+- .|.. ..++.+...|-+.|++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999999887766 6778888999999999999999999999884 4543 5688899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHH
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 464 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 464 (490)
++|+..+++.++.. |+ ...|+.+...|...|+.+.|...+.+++..+| .-..+++.|...|-..|...++
T Consensus 405 ~~Ai~~YkealrI~--------P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 405 DDAIMCYKEALRIK--------PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHHHHHHHHHHhcC--------chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHH
Confidence 99999999999876 77 78899999999999999999999999999998 7789999999999999999999
Q ss_pred HHHHHhhCCCCCCHH
Q 011226 465 MLRRLKMEKVEVSEA 479 (490)
Q Consensus 465 ~~~~m~~~~~~p~~~ 479 (490)
+-..-....++||..
T Consensus 476 I~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 476 IQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHccCCCCc
Confidence 988888888999864
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.2e-22 Score=190.16 Aligned_cols=300 Identities=14% Similarity=0.095 Sum_probs=194.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCCh
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDI 209 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~ 209 (490)
+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4455666666666666666542 2344566666666666666666666666655421111 23456666677777777
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHhcCChhHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL----SAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 285 (490)
+.|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|..
T Consensus 124 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777664 4455666777777777777777777777777665433221 234455666667777777777
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.|+++.+..+. +...+..+...+.+.|++++|.++++++...++.....+++.++.+|...|++++|...++++.+.
T Consensus 202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 77777665432 344556666777777777777777777766544333455667777777777788887777777764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCC
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDD 442 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 442 (490)
.|+...+..++..+.+.|++++|..+++++.+.. |+...+..++..+.. .|+.+++..+++++.+.++.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--------P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--------PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 3555556667777777777888888777777765 777777766666554 44777777777777765544
Q ss_pred CCHH
Q 011226 443 LGVE 446 (490)
Q Consensus 443 ~~~~ 446 (490)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 4443
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.5e-22 Score=178.84 Aligned_cols=389 Identities=16% Similarity=0.118 Sum_probs=333.0
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHH-HH
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYG-SL 129 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~l 129 (490)
.+.-.+.|..+...+...|+++.|+..++.+.+.. +.....|..+..++...|+.+.|.+.|....+..|+..... .+
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 34456778888889999999999999999998876 34677899999999999999999999999998777766443 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCC
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVND 208 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~ 208 (490)
-..+...|++++|...+.+..+... --...|+.|...+...|+...|+..|++..+. .|+ ...|-.|...|-..+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 4555567999999999998887643 34678999999999999999999999999874 454 4678889999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++.|+..|.+.... -+.....+..+...|...|++|-|+..+++..... |+ ...|+.|..++-..|++.+|.+.|
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHH
Confidence 99999999999886 46667788889999999999999999999998753 43 578999999999999999999999
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
++.....+. .....+.|...+...|.+++|..+|.....-.+. -...++.|...|-.+|++++|+..+++.+. +.|
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P 419 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKP 419 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCc
Confidence 999886543 3456788999999999999999999998876554 456788899999999999999999999998 567
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 368 NA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 368 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
+. ..|+.+...|-..|+++.|+..+.+.+... |. ...++.|...|...|++.+|+.-+++.++..| .-+
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-Dfp 490 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--------PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFP 490 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCc
Confidence 65 578899999999999999999999999987 76 67889999999999999999999999999998 777
Q ss_pred HhHHHHHHHHHhcCC
Q 011226 446 EVFEPLIRTYAAAGR 460 (490)
Q Consensus 446 ~~~~~l~~~~~~~g~ 460 (490)
.+|..++.++.-..+
T Consensus 491 dA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 491 DAYCNLLHCLQIVCD 505 (966)
T ss_pred hhhhHHHHHHHHHhc
Confidence 888888887755444
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.1e-20 Score=185.30 Aligned_cols=336 Identities=10% Similarity=-0.066 Sum_probs=274.2
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
....+..++..+.+.|++++|+.+++........ +...+..++.+....|+++.|...|+.+.. .+.+...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3455677788899999999999999999877633 344556666777789999999999999998 44456788889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
+...|++++|...+++...... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999998642 45678888999999999999999999988765422 23333333 357889999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhH----HHHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE----VYRIWR 288 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 288 (490)
...++.+.+.. ..++...+..+...+.+.|++++|...+++...... .+...+..+...+...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999988863 234444555667888999999999999999988653 457788889999999999986 899999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 368 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 368 (490)
...+..+. +...+..+...+...|++++|...++......+. +...+..+...+...|++++|...|+.+.+. .|+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 99887654 5667888999999999999999999999987665 6677888899999999999999999999985 344
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 369 AKT-WEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 369 ~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
... +..+..++...|+.++|+..|++..+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 433 3445667899999999999999999886
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=4.4e-22 Score=186.27 Aligned_cols=296 Identities=14% Similarity=0.105 Sum_probs=152.8
Q ss_pred HHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---cchHHHHHHHHHhcCCCC
Q 011226 100 VAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS---SMPFNSLMTLYAKTGHPE 175 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 175 (490)
+...|++++|...|.++....| +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3344555555555555544222 233455555555555555555555555544321111 123445555555555555
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
+|..+|+++.+.. +++..++..++.++...|++++|.+.++.+.+.+...+. ...+..++..+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555431 223445555555555555555555555555554211111 112334555555566666666666
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 011226 253 KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 332 (490)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (490)
+++.+... .+...+..+...+.+.|++++|.++++++...++.....++..++.+|...|++++|...++.+.+..+
T Consensus 204 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-- 280 (389)
T PRK11788 204 KKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-- 280 (389)
T ss_pred HHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Confidence 66554321 233445555555666666666666666655443322233455556666666666666666666555432
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR---NGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 401 (490)
+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++.+++++.+.++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 3334455666666666666666666666553 4566566555555443 34566666666666655544
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=4.8e-20 Score=181.39 Aligned_cols=398 Identities=11% Similarity=0.014 Sum_probs=223.3
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHH
Q 011226 57 EVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCK 135 (490)
Q Consensus 57 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 135 (490)
.+......+.+.|++++|+..|+...... |+...|..+..+|.+.|++++|++.++...+..| +...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34455667888999999999999998764 6777888899999999999999999999988444 56789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH-----------------------------HHhcCCCCcHHHHHHHHHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTL-----------------------------YAKTGHPEKIPAIIQEMKA 186 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------------~~~~~~~~~a~~~~~~~~~ 186 (490)
.|++++|+.-|......+...+. ....++.. +...........-+....+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999998877655443211111 01111100 0000000000000000000
Q ss_pred CCCCCCH-hhHHHHHHH---HHHcCChhHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 187 SSIMPDS-YTYNVWMRA---LAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 187 ~~~~p~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
..++. ..+..+... ....+++++|.+.|+...+.+.. +.....+..+...+...|++++|+..|++......
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P- 362 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP- 362 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Confidence 00000 000000000 01224566666666666654311 22334455566666666666666666666655321
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
.....|..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...|+...+..+. +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence 12445555666666666666666666666554332 3445555666666666666666666666655443 455555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH-HHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHF 420 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 420 (490)
..+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|++.|++.++..... .....+. ..+...+..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHH
Confidence 66666666666666666666532 1234555566666666666666666666666553210 0011111 1122222223
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 421 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
...|++++|...+++++..+| .+..++..+...+.+.|+..+++
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 334666666666666666655 55556666666666666655544
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=5.3e-20 Score=192.76 Aligned_cols=395 Identities=13% Similarity=0.020 Sum_probs=268.2
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCH---hHHH------------
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNH---LTYG------------ 127 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~------------ 127 (490)
..+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|+..|++..+..|+. ..|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 44566788888888888887665 3356677777788888888888888888776633332 1121
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHH--------
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW-------- 199 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-------- 199 (490)
.....+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 123456677888888888888877653 345566677777888888888888888877642 1123333222
Q ss_pred ----------------------------------HHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCH
Q 011226 200 ----------------------------------MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF 245 (490)
Q Consensus 200 ----------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 245 (490)
...+...|++++|+..|++..+. .|.+...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 23344567777777777777765 455566666677777777777
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc---------hhHHHHHHHHHhcCChh
Q 011226 246 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN---------ISYLNMIQVLVNLKDLP 316 (490)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~ 316 (490)
++|...++++.+... .+...+..+...+...++.++|...++.+......++. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 777777777665332 23334444444555667777777776655322111111 11223456677788888
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
+|..+++. ...+...+..+...+.+.|++++|+..|++..+..+. +...+..+...+...|++++|++.++.+.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88887762 2235667778889999999999999999999986433 67788889999999999999999999888
Q ss_pred hcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHhHHHHHHHHHhcCCCcHHHH---HH
Q 011226 397 DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL-----GVEVFEPLIRTYAAAGRTSPVML---RR 468 (490)
Q Consensus 397 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~~~~---~~ 468 (490)
+.. ..+...+..+..++...|++++|.+.+++++...+.. +...+..+...+...|+..+++. ..
T Consensus 665 ~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 665 ATA-------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ccC-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 765 1346677778888999999999999999998865422 23567777888999999666553 34
Q ss_pred HhhCCCCC
Q 011226 469 LKMEKVEV 476 (490)
Q Consensus 469 m~~~~~~p 476 (490)
|...|+.|
T Consensus 738 l~~~~~~~ 745 (1157)
T PRK11447 738 MVASGITP 745 (1157)
T ss_pred HhhcCCCC
Confidence 44445543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=4.6e-20 Score=180.84 Aligned_cols=346 Identities=10% Similarity=0.032 Sum_probs=280.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKT 171 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (490)
...++..+.+.|+++.|..+++.... .+.+...+..++.+....|+++.|...|+++....+ .+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 44566778889999999999999888 444456677777888889999999999999998763 4567788888999999
Q ss_pred CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011226 172 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA 251 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 251 (490)
|++++|...++++.+.. +.+...+..+..++...|+.++|...++.+... .+.+...+..+ ..+...|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999998853 235677888999999999999999999998876 44455555444 347889999999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhh----HHHHHHHHHh
Q 011226 252 LKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG----AEKCFKEWES 327 (490)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 327 (490)
++.+.+....++...+..+..++...|++++|...++.+....+. +...+..+...+...|++++ |...++....
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999887654344555566678889999999999999999887653 45677788999999999986 8999999988
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCc
Q 011226 328 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 407 (490)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 407 (490)
..+. +...+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|+..++++.+..
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-------- 348 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-------- 348 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 7665 7889999999999999999999999999986433 45667778889999999999999999999887
Q ss_pred CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 408 PSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 408 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
|+. ..+..+..++...|++++|...|+++.+..|..-...|...+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~ 396 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLA 396 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHH
Confidence 654 33444577889999999999999999998764334444433333
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=8.3e-20 Score=179.73 Aligned_cols=298 Identities=12% Similarity=-0.000 Sum_probs=218.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
+......+.+.|+++.|+..|+......|+...|..+..+|.+.|++++|++.++..++.+. .+...|..+..+|...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcC
Confidence 44556778889999999999999998778888999999999999999999999999998753 45668888999999999
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCCH----------------------
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG-RVAADW---------------------- 229 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~---------------------- 229 (490)
++++|+..|......+-..+.. ...++..+.. ..+........+.. ...+..
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 9999998887665432111111 1111111111 11111111111110 000000
Q ss_pred --------HHHHHHHHHH---HHcCCHHHHHHHHHHHHHcc-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 230 --------TTFSNLASIY---VEAGLFEKAERALKELENRN-AHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 230 --------~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
..+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++.....+.
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 0011111111 22468999999999998764 223 4567888888899999999999999999876543
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011226 297 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS 376 (490)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 376 (490)
....|..+...+...|++++|...|+...+..+. +..+|..+...+...|++++|...|++..+... .+...+..+.
T Consensus 364 -~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la 440 (615)
T TIGR00990 364 -VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLG 440 (615)
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHH
Confidence 3457788889999999999999999999887655 678899999999999999999999999998643 2566777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..+.+.|++++|+..|++.++..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 88999999999999999998865
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=2.7e-19 Score=187.48 Aligned_cols=314 Identities=14% Similarity=0.083 Sum_probs=154.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC-CHhhH------------HHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP-DSYTY------------NVW 199 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~------------~~l 199 (490)
+...|++++|+..|++.++... .+...+..+...+.+.|++++|...|++..+..... ....+ ...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 3445666666666666655432 244555556666666666666666666655532111 10111 111
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH----------
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF---------- 269 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------- 269 (490)
...+.+.|++++|+..|+++.+. .+.+...+..+...+...|++++|.+.|+++.+... .+...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCH
Confidence 23445566666666666666654 444555555566666666666666666666554322 12222222
Q ss_pred --------------------------------HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhh
Q 011226 270 --------------------------------LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 317 (490)
Q Consensus 270 --------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (490)
+...+...|++++|++.|++..+..+. +...+..+...|...|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 233344556666666666666654432 33444556666666666666
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---------------------------------
Q 011226 318 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG--------------------------------- 364 (490)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------------------- 364 (490)
|...++.+.+..+. +...+..+...+...++.++|...++.+....
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 66666666554333 33333333333334444444444443322110
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 365 ------ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 365 ------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
.+.+...+..+...+.+.|++++|++.|+++++... .+...+..++..+...|++++|...++.+.+
T Consensus 593 ~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-------~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-------GNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 112223333344444444555555555555554430 2244444555555555555555555555444
Q ss_pred cCCCCCHHhHHHHHHHHHhcCC
Q 011226 439 AVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
..+ .+..++..+..++...|+
T Consensus 666 ~~p-~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 666 TAN-DSLNTQRRVALAWAALGD 686 (1157)
T ss_pred cCC-CChHHHHHHHHHHHhCCC
Confidence 443 344444445555555555
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=7.1e-20 Score=183.39 Aligned_cols=418 Identities=10% Similarity=-0.012 Sum_probs=300.1
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC-CCCHhHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET-SKNHLTYGS 128 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 128 (490)
..+.++..+...+......|+.++|++++....... +.+...+..+..++.+.|++++|...|+..... +.+...+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 88 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRG 88 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 456788888888888899999999999999887633 345556888888899999999999999998773 455677788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
+...+...|++++|+..+++..+... .+.. +..+...+...|+.++|+..++++.+... -+...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 88888999999999999999888642 3444 77888888899999999999999988642 244555667778888888
Q ss_pred hhHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-cCCCCHH-HHH----
Q 011226 209 ISGAERVIEEMKRDGRVAADW------TTFSNLASIYV-----EAGLF---EKAERALKELENR-NAHRDLS-AYQ---- 268 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~---- 268 (490)
.+.|+..++.+... |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~~----p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 SAPALGAIDDANLT----PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred hHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 89898888765542 111 11112222222 12234 6788888888753 1122221 111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCC-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---ChhhHHHHHHHH
Q 011226 269 FLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY---DIRVTNVMIGAY 344 (490)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~ 344 (490)
..+.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...|+.+....+.. .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456778999999999998876542 322 22335778889999999999999887654321 123455666778
Q ss_pred HhcCChhHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 345 AKEGRLENAEELKERARRRGA-----------DPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
...|++++|..+++.+.+... .|+. ..+..+...+...|+.++|+++++++.... +.+.
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-------P~n~ 393 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-------PGNQ 393 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCH
Confidence 889999999999998887521 1232 244566677888999999999999998876 1347
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCc--HHHHHHHhhCCCCCCHHHHHHHHH
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS--PVMLRRLKMEKVEVSEASKKLLEA 486 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~~~~m~~~~~~p~~~~~~~l~~ 486 (490)
..+..+...+...|++++|++.+++++...| .+...+..++..+...|++. +++++.+.+ ..|+......+.+
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~ 468 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 7888888899999999999999999999888 78888888888888888844 444555443 4677666554443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.9e-18 Score=173.24 Aligned_cols=406 Identities=10% Similarity=-0.005 Sum_probs=300.2
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK 102 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (490)
.+......-.| +...+..++..... ..+.+...+..+...+...|++++|.++++...... +.+...+..+..++..
T Consensus 19 ~d~~~ia~~~g-~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAG-QDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444444444 44445555555543 345666678999999999999999999999998775 3456667788888999
Q ss_pred hCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 103 VQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
.|++++|...++++.. .+.+.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...+..+.|++.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 9999999999999988 444566 88888999999999999999999999763 34556667788888889999999988
Q ss_pred HHHHHCCCCCCH------hhHHHHHHHHHH-----cCCh---hHHHHHHHHHHHCCCCCCCH-HHHH----HHHHHHHHc
Q 011226 182 QEMKASSIMPDS------YTYNVWMRALAA-----VNDI---SGAERVIEEMKRDGRVAADW-TTFS----NLASIYVEA 242 (490)
Q Consensus 182 ~~~~~~~~~p~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~~~~~~~~-~~~~----~l~~~~~~~ 242 (490)
+.... .|+. .....+++.... .+++ ++|+..++.+.+.....|+. ..+. ..+..+...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 86654 2321 112223333221 2234 77888888888641122222 1111 113345677
Q ss_pred CCHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC---CchhHHHHHHHHHhcCChhhH
Q 011226 243 GLFEKAERALKELENRNAH-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT---ANISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 318 (490)
|++++|...|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+..+.. .......+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999999887532 332 22335778999999999999999987654321 123455667788999999999
Q ss_pred HHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 319 EKCFKEWESGCA-----------TYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 319 ~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
...++.+....+ .|+ ...+..+...+...|+.++|+++++++....+ .+...+..+...+...|+
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 999999887643 122 23456677889999999999999999998633 356778888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+++|++.+++++... |+ ...+...+..+...|++++|..+++++++..| .++.+
T Consensus 409 ~~~A~~~l~~al~l~--------Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P-d~~~~ 463 (765)
T PRK10049 409 PRAAENELKKAEVLE--------PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP-QDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 999999999999986 55 67777888899999999999999999999887 55443
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=3.3e-17 Score=161.22 Aligned_cols=384 Identities=11% Similarity=0.023 Sum_probs=224.4
Q ss_pred HhccCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHH
Q 011226 65 LRDRKLYYPALKLSENMEKRGMNKTV--SDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEK 141 (490)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~ 141 (490)
..+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++... .+.+......+...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344555555555555554443 221 122 444444455555555555555442 11111112222334444455555
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
|+++|+++.+..+ -+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+
T Consensus 121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5555555555432 22333444444455555555555555555442 23333332222222223334335555555555
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHH------------------------------------------------HHHHHHH
Q 011226 222 DGRVAADWTTFSNLASIYVEAGLFE------------------------------------------------KAERALK 253 (490)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~------------------------------------------------~A~~~~~ 253 (490)
. .|.+...+..+.....+.|-.. .|+.-++
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 4 3334444444444444443332 3333344
Q ss_pred HHHHc-cCCCCH-HHH----HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 254 ELENR-NAHRDL-SAY----QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 254 ~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
.+... +..|.. ..| .-.+-++...|+..++++.|+.+...+......+-..+.++|...+++++|..+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 43331 111221 111 123446777888899999999988777554556778888999999999999999998865
Q ss_pred cCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHHhcCCHHHH
Q 011226 328 GCA-----TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-------------DPNAK-TWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 328 ~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~~g~~~~A 388 (490)
... .++......|.-+|...+++++|..+++.+.+..+ .||-. .+..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 431 22333356788888899999999999999887311 12222 234456677888999999
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 464 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 464 (490)
++.++++.... +-|......+...+...|.+.+|+..++.+....| .+..+...++.++...|++.++
T Consensus 436 e~~le~l~~~a-------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 436 QKKLEDLSSTA-------PANQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHH
Confidence 99999998876 14678888888889999999999999988888877 7888888888888888885443
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=2.6e-16 Score=158.22 Aligned_cols=406 Identities=12% Similarity=0.053 Sum_probs=279.9
Q ss_pred CHHhHHHH-HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-hCCHHHHHHHHhhcCCCCCCHhHHHHHHH
Q 011226 54 FKWEVGDT-LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK-VQGIDAAENYFVDLPETSKNHLTYGSLLN 131 (490)
Q Consensus 54 ~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 131 (490)
+...+... .+.|.+.+++++|+++++.+.+.+ +.+......+..+|.. .++ +.+..+++. ..+.+...+..+..
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~--~lk~d~~l~~ala~ 255 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ--GIFTDPQSRITYAT 255 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch--hcccCHHHHHHHHH
Confidence 44445554 788888999999999999998887 3445546666667776 366 777777553 23357778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-CCcchHH------------------------------HHHHHHH-----------
Q 011226 132 CYCKELMTEKAEALLEKMKELNLG-FSSMPFN------------------------------SLMTLYA----------- 169 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~----------- 169 (490)
.|.+.|+.++|.++++++...... |...+|. .++..+.
T Consensus 256 ~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (987)
T PRK09782 256 ALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL 335 (987)
T ss_pred HHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 888899999888888887654221 2222220 0112222
Q ss_pred ----------------------------------------------------hcCCCCcHHHHHHHHHHC--CCCCCHhh
Q 011226 170 ----------------------------------------------------KTGHPEKIPAIIQEMKAS--SIMPDSYT 195 (490)
Q Consensus 170 ----------------------------------------------------~~~~~~~a~~~~~~~~~~--~~~p~~~~ 195 (490)
+.|+.++|.++|...... ...++...
T Consensus 336 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 336 LATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred hcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 233344444444443321 01112222
Q ss_pred HHHHHHHHHHcCC---hhHH----------------------HHHHHHHHHC-CCCCC--CHHHHHHHHHHHHHcCCHHH
Q 011226 196 YNVWMRALAAVND---ISGA----------------------ERVIEEMKRD-GRVAA--DWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 196 ~~~l~~~~~~~~~---~~~a----------------------~~~~~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~~~~ 247 (490)
.+-++..|.+.+. ...+ ...++..... +..++ +...|..+..++.. ++.++
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~e 494 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGV 494 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHH
Confidence 3344555554443 1112 1112222111 11244 66777777777776 78888
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|...+.+..... |+......+...+...|++++|...|+++... .|+...+..+...+...|+.++|...++...+
T Consensus 495 Ai~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 495 ALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999887776643 55544444455556899999999999987654 23444566777888999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCc
Q 011226 328 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 407 (490)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 407 (490)
..+. +...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.+...
T Consensus 571 l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-------- 639 (987)
T PRK09782 571 RGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-------- 639 (987)
T ss_pred cCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------
Confidence 6543 3333334444455669999999999999985 5678888899999999999999999999999987
Q ss_pred CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 408 PS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 408 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
|+ ...+..+..++...|++++|...++++++..| .+...+..+..++...|+..+++...-+...+.|+..-
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 54 77888888899999999999999999999998 89999999999999999988777666666677787643
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=9e-16 Score=132.28 Aligned_cols=430 Identities=13% Similarity=0.142 Sum_probs=284.0
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHH---HhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011226 23 EALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKK---LRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDL 99 (490)
Q Consensus 23 ~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (490)
++|+..+.. + ...+.--+.+.+...|.+.++..-..+++. |..++-+-.-++.|-.|...| .-+..+|
T Consensus 120 ~nL~kmIS~-~-EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW------ 190 (625)
T KOG4422|consen 120 NNLLKMISS-R-EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW------ 190 (625)
T ss_pred hHHHHHHhh-c-ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc------
Confidence 344444433 2 244444555666666666665554444332 222222222233333444333 1222222
Q ss_pred HHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHH
Q 011226 100 VAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA 179 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 179 (490)
+.|++ |.-+|+..++ +..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-. ...+
T Consensus 191 --K~G~v--AdL~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 --KSGAV--ADLLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred --ccccH--HHHHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 22333 3345555554 77899999999999999999999999999888889999999999875433 2388
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCChhH----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 011226 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISG----AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK-AERALKE 254 (490)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~ 254 (490)
++.+|.+..+.||..|||+++++..+.|+++. |.+++.+|.+.| +.|+..+|..+|..+++.++..+ |..++.+
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 99999999999999999999999999998775 456888999999 99999999999999999888754 4555555
Q ss_pred HHHc----cCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----CCCCCc---hhHHHHHHHHHhcCChhhHH
Q 011226 255 LENR----NAHR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----FPNTAN---ISYLNMIQVLVNLKDLPGAE 319 (490)
Q Consensus 255 ~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~~~~~~a~ 319 (490)
+... .++| |...|..-+..|.+..+.+-|.++..-+... .+.|+. +-|..+....|.....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 2222 3456677788888999999888876655422 122221 24567778888889999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H----
Q 011226 320 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DM--------K---- 386 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~--------~---- 386 (490)
..|+.|.-.-.-|+..+...++++....|.++-..++|..++..|...+...-..++..+++.+ .. .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 9999999888888999999999999999999999999999998875555554445555555443 11 1
Q ss_pred -HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHH---HhcCCC
Q 011226 387 -LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTY---AAAGRT 461 (490)
Q Consensus 387 -~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~---~~~g~~ 461 (490)
-|..+++.....-.+ -..........+..+-.+.+.|..++|.+++..+.+.+- -|-....|+++... .+.++.
T Consensus 499 k~aad~~e~~e~~~~R-~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIR-QRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHHHhhHHH-HHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 111121111110000 000124456667777788999999999999999865432 24455555454444 333442
Q ss_pred --cHHHHHHHhhCCC
Q 011226 462 --SPVMLRRLKMEKV 474 (490)
Q Consensus 462 --~~~~~~~m~~~~~ 474 (490)
+...++.|...+.
T Consensus 578 sqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHHcCc
Confidence 3333455544444
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=2.2e-15 Score=151.58 Aligned_cols=189 Identities=11% Similarity=0.019 Sum_probs=135.0
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
++.++|...+.+..... |+......+...+...|++++|...|+.+....+ +...+..+...+...|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--SNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44445555555544433 3333333334444578888888888887655422 3344556667778888888888888
Q ss_pred HHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 358 ERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 358 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
+...+.+ |+. ..+..+...+...|++++|+..+++.++.. |+...+..+..++.+.|++++|...++++
T Consensus 566 ~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--------P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 566 QQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--------PSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888753 332 223333334455699999999999998877 78888999999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHH
Q 011226 437 KKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~ 481 (490)
+...| .+...++.+..++...|+..+++...-+...+.|+....
T Consensus 636 L~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a 679 (987)
T PRK09782 636 LELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL 679 (987)
T ss_pred HHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99998 889999999999999999777766555566677776543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=2.8e-15 Score=147.81 Aligned_cols=374 Identities=10% Similarity=-0.024 Sum_probs=266.0
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHc
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKE 136 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~ 136 (490)
+..++..+...|+.++|+..+++..... +........+...+...|++++|.++|+.+.+ .+.+...+..++..+...
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 3377777777788888888888877221 12222233335567777888888888888887 334456667777778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhH-----
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISG----- 211 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----- 211 (490)
++.++|++.++++.... |+...+..++..+...++..+|++.++++.+.. +-+...+..++.++.+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 88888888888887754 555555444334433455555888888887753 2234444445555544443322
Q ss_pred -------------------------------------------HHHHHHHHHHC-CCCCCCHHH----HHHHHHHHHHcC
Q 011226 212 -------------------------------------------AERVIEEMKRD-GRVAADWTT----FSNLASIYVEAG 243 (490)
Q Consensus 212 -------------------------------------------a~~~~~~~~~~-~~~~~~~~~----~~~l~~~~~~~~ 243 (490)
|+.-++.+... +..|+.... ..-.+-++...|
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 33333343332 112322222 223456677889
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-----CCCchhHHHHHHHHHhcCChhhH
Q 011226 244 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP-----NTANISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a 318 (490)
++.++++.|+.+...+.+....+-..+.++|...+.+++|..+++.+..... .++......|.-++...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 9999999999999988765667888899999999999999999999876532 12233346789999999999999
Q ss_pred HHHHHHHHhcCC-----------CCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 319 EKCFKEWESGCA-----------TYDI---RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 319 ~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
..+++.+.+..+ .||. ..+..++..+.-.|++.+|++.++.+....+ -|......+...+...|.
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 999999987432 1222 2334567778899999999999999988643 377888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
+.+|+..++...... |+ ..+....+.++...|++++|..+.+.+.+..| .+.
T Consensus 466 p~~A~~~~k~a~~l~--------P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P-e~~ 518 (822)
T PRK14574 466 PRKAEQELKAVESLA--------PRSLILERAQAETAMALQEWHQMELLTDDVISRSP-EDI 518 (822)
T ss_pred HHHHHHHHHHHhhhC--------CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC-Cch
Confidence 999999998877775 54 67778888999999999999999999999887 444
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6e-16 Score=146.39 Aligned_cols=418 Identities=15% Similarity=0.067 Sum_probs=224.2
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHh--HHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMN--KTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL--TYG 127 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 127 (490)
+.++..++.+...|.-.|++..++.+...+...... .-...|-.+..++...|+++.|...|....+..++.. .+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 345555555555555566666666665555443311 1122344555556666666666666555555333332 233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC----CCCcHHHHHHHHHH-----------------
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG----HPEKIPAIIQEMKA----------------- 186 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~----------------- 186 (490)
-|...+.+.|+++.+...|+....... -+..+...|...|...+ ..+.|..++.+..+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345555556666666655555554321 22233333333333332 12333333333322
Q ss_pred --------------------CCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC--C------CCCHHHHHHHHHH
Q 011226 187 --------------------SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR--V------AADWTTFSNLASI 238 (490)
Q Consensus 187 --------------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~------~~~~~~~~~l~~~ 238 (490)
.+-.+.+...|.+...+...|+++.|...|......-. . .++..+--.+..+
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 22233444445555555555555555555555443300 0 0111112223344
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhh
Q 011226 239 YVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 317 (490)
Q Consensus 239 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (490)
+-..++++.|.+.|..+.+.. |+ +..|-.+.......+...+|...++...... ..++..+..+...+.+..++..
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 444445555555555554422 22 1112222211122244455555555554332 1233344444555555556666
Q ss_pred HHHHHHHHHhcC-CCCChhhHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 318 AEKCFKEWESGC-ATYDIRVTNVMIGAYAK------------EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 318 a~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
|.+-|..+.+.- ..+|+.+...|...|.. .+..+.|+++|...++..+. |...-|-+.-.++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccC
Confidence 665555443321 12344444445554432 24466788888888776443 66666777777888888
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCCCcH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (490)
+.+|..+|.+..+... ....+|..+.++|...|++..|+++|+...+ .....++.+...|.+++.+.|++.+
T Consensus 662 ~~~A~dIFsqVrEa~~-------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS-------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred chHHHHHHHHHHHHHh-------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 8888888888888751 3566788888888888888888888888766 3445678888888888888888777
Q ss_pred HHHHHHhhCCCCCCHHHH
Q 011226 464 VMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 464 ~~~~~m~~~~~~p~~~~~ 481 (490)
+......+..+.|...+.
T Consensus 735 ak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHhCCccchH
Confidence 777777777777776653
No 27
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=6.9e-16 Score=134.01 Aligned_cols=348 Identities=18% Similarity=0.178 Sum_probs=234.5
Q ss_pred HHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH--------HHHHH---
Q 011226 98 DLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPF--------NSLMT--- 166 (490)
Q Consensus 98 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~--- 166 (490)
..+.+.|.++.|+..|+...+..||..+--.|+-++..-|+-++..+.|.+|......||..-| ..|+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 3455778888888888888877778766555555666678888888888888765433433322 11221
Q ss_pred ------HHHhcCCCCcHHHHHH---HHHHCCCCCCHhh-------------HH--------HHHHHHHHcCChhHHHHHH
Q 011226 167 ------LYAKTGHPEKIPAIIQ---EMKASSIMPDSYT-------------YN--------VWMRALAAVNDISGAERVI 216 (490)
Q Consensus 167 ------~~~~~~~~~~a~~~~~---~~~~~~~~p~~~~-------------~~--------~l~~~~~~~~~~~~a~~~~ 216 (490)
.+-+.+. ..|.+..- +++.--+.|+-.. +. .-..-+.+.|+++.|++++
T Consensus 364 ~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1111111 11111111 1111111111100 00 1123567788888888777
Q ss_pred HHHHHCCCCCCCHHHHHHH------------------------------------HHHHHHcCCHHHHHHHHHHHHHccC
Q 011226 217 EEMKRDGRVAADWTTFSNL------------------------------------ASIYVEAGLFEKAERALKELENRNA 260 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~ 260 (490)
.-+.+.. ...-...-+.| .+.....|++++|.+.+++......
T Consensus 443 kv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 7766543 11111111111 1111235788999999998876322
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 011226 261 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM 340 (490)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 340 (490)
.-....||. .-.+-..|+.++|++.|-++...- .-+..+...+...|....+...|++++.+....-+. |+.+...|
T Consensus 522 sc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~-dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN-DPAILSKL 598 (840)
T ss_pred HHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC-CHHHHHHH
Confidence 212222322 224667899999999998876542 235566777888999999999999999888776444 88999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHH
Q 011226 341 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 420 (490)
...|-+.|+-..|.+.+-+--.. ++-+..+...+...|....-+++++.+|++..-.. |+..-|..++..|
T Consensus 599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--------p~~~kwqlmiasc 669 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--------PNQSKWQLMIASC 669 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--------ccHHHHHHHHHHH
Confidence 99999999999999887665443 45577888888888889999999999999987655 9999999888765
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 421 -EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 421 -~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
.+.|++++|..+++...+.-| .|......|++.+...|-
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhccccc
Confidence 578999999999999998888 899999999999988887
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1.7e-14 Score=124.51 Aligned_cols=346 Identities=15% Similarity=0.135 Sum_probs=242.1
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC--CCCCHhHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE--TSKNHLTYG 127 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~ 127 (490)
-.+.+..++..+|.++++....+.|.+++++......+.+..++|.+|.+-.-..+ .++..+|.. ..||..++|
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence 45667888999999999999999999999998666667888899998877654433 566667766 679999999
Q ss_pred HHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCc-HHHHHHHHHHC----CCCC----CHh
Q 011226 128 SLLNCYCKELMTEK----AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEK-IPAIIQEMKAS----SIMP----DSY 194 (490)
Q Consensus 128 ~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~p----~~~ 194 (490)
+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++... .++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 99999999998865 46788889999999999999999998888877644 55555555432 2222 345
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCC---CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDG---RVAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ 268 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (490)
.|...+..|.+..|.+.|.++..-+.... .+.|+. .-|..+....|+....+.-...|+.|..+-+-|+..+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~ 437 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMI 437 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHH
Confidence 67778888888899998888877665421 122332 235667777888888999999999998877778888888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC-Ch--h-----------hHHHHHHHH-----HhcC
Q 011226 269 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-DL--P-----------GAEKCFKEW-----ESGC 329 (490)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--~-----------~a~~~~~~~-----~~~~ 329 (490)
.++++..-.+.++-.-++|..++..|.......-..++..+++.. +. . -|..+++.. ....
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 899988889999988899988887765444444344444444433 11 0 011111111 0112
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 330 ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-ADPNAKTWE---IFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
........+.+.-.+.+.|+.++|.++|..+.+++ -.|-....| .++..-.+.+....|+.+++-+...+
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 33345566666777778888888888888775433 223333444 44455566677777777777776665
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.9e-14 Score=136.48 Aligned_cols=392 Identities=14% Similarity=0.102 Sum_probs=281.2
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCH-hHHHHHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNH-LTYGSLLN 131 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~ 131 (490)
.-+..+..+.+.|...|++++|...|....+..-......+--+...+.+.|+++.+...|+.+....||. .+...|..
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 44566777888888888888888888777666521112333456677777777777777777766633432 33333333
Q ss_pred HHHHcC----CHHHH---------------------------------HHHHHHH----HhCCCCCCcchHHHHHHHHHh
Q 011226 132 CYCKEL----MTEKA---------------------------------EALLEKM----KELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 132 ~~~~~~----~~~~a---------------------------------~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 170 (490)
.|...+ ..+.| +..|... ...+-.+.....|.+......
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 333332 22333 3333322 222333455666788888888
Q ss_pred cCCCCcHHHHHHHHHHC---CCCCCH------hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKAS---SIMPDS------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
.|++++|...|...... ...+|. .+--.+.++.-..++.+.|.+.|..+.+. .|.-+..|.-++.....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHh
Confidence 99999999999988654 122232 22333666777788999999999999996 45555556666544455
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCCCchhHHHHHHHHHh---------
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVN--------- 311 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--------- 311 (490)
.+...+|...++...... ..++..++.+...+.....+..|.+-|..+.+. ...+|..+...|.+.|..
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 688899999999988743 346667777888899999999998877766543 223566666666665542
Q ss_pred ---cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011226 312 ---LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 312 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 388 (490)
.+..++|.++|.++.+..+. |...-|-+.-.++..|++.+|..+|.+..+... -...+|..+..+|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHH
Confidence 34578899999999998777 888889999999999999999999999998643 2556888999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
+++|+...+... ...++.+...|.+++.+.|.+.+|.+.+..++...|......||..+-.
T Consensus 700 IqmYe~~lkkf~-----~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 700 IQMYENCLKKFY-----KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHhc-----ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 999999988852 2356899999999999999999999999999999985556666654433
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.74 E-value=9.2e-14 Score=130.95 Aligned_cols=376 Identities=14% Similarity=0.103 Sum_probs=286.3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHc
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKE 136 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~ 136 (490)
+......+.-+|++++|.+++.++++.. +.....|..|..+|-..|+.+++...+-.+.. .+.|...|..+.....+.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 3334445555699999999999999887 45778899999999999999999998877766 556778999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhH----HHHHHHHHHcCChhHH
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTY----NVWMRALAAVNDISGA 212 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a 212 (490)
|+++.|.-.|.+.++..+ ++...+---+..|-+.|+...|.+-|.++.....+.|..-+ -..++.+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999764 55555556677888999999999999999886432222222 2345677788888999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC---------------------------CHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR---------------------------DLS 265 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~ 265 (490)
.+.++.....+....+...++.++..|.+...++.|......+......+ +..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99999988865567778888999999999999999999888876622211 222
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAF--PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
.+. +.-++.+....+....+........ +.-+...|.-+..++...|++..|..+|..+......-+...|-.+..+
T Consensus 380 v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 211 2223444444444444555555554 3335567889999999999999999999999987776688899999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCCCcCCHHHHHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR--GDGGKWVPSSETIRTFMRHF 420 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~p~~~~~~~l~~~~ 420 (490)
|...|..++|.+.|+..+.. .|+ ...-..|...+.+.|+.++|.+.++.+..-+. .+...+.|+..........+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999999985 343 34445666778899999999999998763321 12233667777777777888
Q ss_pred HhcCChHHHHHHHHHHHH
Q 011226 421 EQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 421 ~~~g~~~~a~~~~~~~~~ 438 (490)
.+.|+.++-..+...|+.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVD 554 (895)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 899998886665555543
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=5.1e-14 Score=130.54 Aligned_cols=284 Identities=11% Similarity=0.093 Sum_probs=208.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHH-HHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHH--HHHHHHHHcCChhHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFN-SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN--VWMRALAAVNDISGA 212 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a 212 (490)
.|+++.|.+.+....+.. +++..+. ....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 589999998887765542 2223333 3344447889999999999988764 45543332 335678889999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHhcCChhHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 285 (490)
...++.+.+. .|-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999887 5777888888999999999999999999999887654322 133333444444555666667
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
+|+.+.+.. +.+......+...+...|+.++|.+++....+... +... .++.+....++.+++.+..+...+...
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777664432 23566777888899999999999999988877433 4322 233444456889999999998887633
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
-|...+..+...|.+.+++++|.+.|+...+.. |+...+..+...+.+.|+.++|...+++.+..
T Consensus 326 -~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 -DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 255567788888999999999999999999887 99888889999999999999999999987664
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=2.5e-12 Score=117.12 Aligned_cols=423 Identities=13% Similarity=0.111 Sum_probs=249.0
Q ss_pred CccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhhCCHHHHHH
Q 011226 36 DVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENM----EKRGMNKTVSDQAIHLDLVAKVQGIDAAEN 111 (490)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 111 (490)
...+..+++...+ ..+-+...|....+.=-.+|+.+....++++- ...|+..+...|..=...|-+.|..-.++.
T Consensus 422 YenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 422 YENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 4556666666543 33444444554444445566666666665543 344555666666555566666666666655
Q ss_pred HHhhcCC----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 112 YFVDLPE----TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 112 ~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
+...... ...-..+|+.-...|.+.+.++-|..+|...++... .+...|...+..--..|..++...+|++....
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 5555444 111233566666666666666666666666655432 34445555555444555566666666666554
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
++-....|....+.+-..||+..|..++.++.+. .+.+...|..-+.....+.++++|..+|.+.... .|+...|
T Consensus 580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~ 654 (913)
T KOG0495|consen 580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW 654 (913)
T ss_pred -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh
Confidence 2223344444455555566666666666666665 4445555666666666666666666666665542 3444555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
..-+...--.++.++|.+++++..+..+. -...|..+.+.+-+.++.+.|...|..-.+..+. .+-.|-.|.+.--+.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKD 732 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHh
Confidence 54444444556666666666665554322 1234555556666666666666666555444332 444555555555556
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------C---------
Q 011226 348 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG--------------G--------- 404 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~--------- 404 (490)
|.+-.|..++++..-+++. +...|-..|+.-.+.|+.+.|..+..++++.....+ .
T Consensus 733 ~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred cchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 6666666666666554433 555566666666666666666655555554431111 0
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHH
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRL 469 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m 469 (490)
+..-|+.+...+...+....+++.|.+.|++..+.++ .+..+|..+...+.++|. ....++...
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1345778888888899999999999999999999999 889999999999999996 334444443
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=4e-12 Score=111.53 Aligned_cols=401 Identities=11% Similarity=0.039 Sum_probs=243.0
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLL 130 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li 130 (490)
..+...+......=..++++..|..+|+.....+ ..+...|...+.+-.++..+..|..+|+.....-|- ...|-..+
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3445555555556666888999999999998776 356777888888888999999999999998883333 34666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChh
Q 011226 131 NCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDIS 210 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 210 (490)
.+--..|++..|.++|++-.+- .|+...|++.|+.-.+.+.++.|..+|+...- +.|++.+|--..+.-.+.|+..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 6666779999999999998874 49999999999999999999999999998876 4589999988888888999999
Q ss_pred HHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHH--
Q 011226 211 GAERVIEEMKRD-GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRI-- 286 (490)
Q Consensus 211 ~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~-- 286 (490)
.+..+|+...+. |....+...+.+...--.++..++.|.-+|+-..+.-++.. ...|..+...--+-|+.....++
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999888774 21122233445555555566777788777777666422111 22333333222233433322221
Q ss_pred ------HHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh-hHHHHH--------HHHHhcCChh
Q 011226 287 ------WRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR-VTNVMI--------GAYAKEGRLE 351 (490)
Q Consensus 287 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li--------~~~~~~~~~~ 351 (490)
++.+...++ .|-.+|--.+..-...|+.+...++|+.....-++.+.. .|...| -.-....+++
T Consensus 305 ~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222222 133344445555555566666666666655443222111 111111 1112345555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSD----YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD 427 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 427 (490)
.+.++|+..++. ++....||.-+-- -..++.++..|.+++..++-.. |...+|...|..-.+.++++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--------PK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--------PKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--------CchhHHHHHHHHHHHHhhHH
Confidence 566666555552 2222233332222 2234455555555555555443 55555555555555555666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHH
Q 011226 428 GAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRR 468 (490)
Q Consensus 428 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~ 468 (490)
.+..++++.++.+| .|-.+|......-...|+ .+.+++..
T Consensus 455 RcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66666666665555 555555555555555555 33444444
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4.4e-14 Score=122.95 Aligned_cols=421 Identities=14% Similarity=0.086 Sum_probs=284.2
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhhCCHHHHHHHHhhcCCCCCCH------hH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQA-IHLDLVAKVQGIDAAENYFVDLPETSKNH------LT 125 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 125 (490)
++-..+..+...|.-+..+.+|+..|+-+.+...-|+..... .+.+.+.+...+.+|+++++......|++ .+
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki 278 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI 278 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence 445666777888888888999999999998877777765432 34577888899999999998776633432 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC------------CH
Q 011226 126 YGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP------------DS 193 (490)
Q Consensus 126 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p------------~~ 193 (490)
.+.+--.+.+.|+++.|+..|+...+.. |+..+-..|+-++.--|+-++..+.|.+|+.....| +.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 5555556788999999999999998865 787776667777777889899999999997653222 32
Q ss_pred hhHHHHHH-----HHHHcC--ChhHHHHHHHHHHHCCCCCCCH---------------------HHHHHHHHHHHHcCCH
Q 011226 194 YTYNVWMR-----ALAAVN--DISGAERVIEEMKRDGRVAADW---------------------TTFSNLASIYVEAGLF 245 (490)
Q Consensus 194 ~~~~~l~~-----~~~~~~--~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~ 245 (490)
...+..++ -.-+.+ +.++++-.--+++.-- +.|+. ..-..-...+.+.|++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapv-i~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPV-IAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccc-cccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22332222 121111 1222222111111110 11211 1111335668899999
Q ss_pred HHHHHHHHHHHHccCCCCH---------------------HHH----------HHHH-----HHHHhcCChhHHHHHHHH
Q 011226 246 EKAERALKELENRNAHRDL---------------------SAY----------QFLI-----TLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~---------------------~~~----------~~l~-----~~~~~~~~~~~a~~~~~~ 289 (490)
+.|.++++-+.+..-+.-. ..| |.-. ......|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 9999999887654322111 111 1000 011234788889998888
Q ss_pred HHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011226 290 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 369 (490)
.......-....|+ +.-.+-..|++++|.+.|-.+...-.. +..+...+...|-...+...|++++.+.... ++.|+
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 87654332223333 344567789999999998887654222 6777777888888889999999998777664 45567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.....+...|-+.|+-..|.+++-+-.+. +..+..+...|...|....-+++++..|+++.-.. |+..-|.
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-------fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq--p~~~kwq 663 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ--PNQSKWQ 663 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC--ccHHHHH
Confidence 78888999999999999999887766555 44678898889989999999999999999976554 7888998
Q ss_pred HHHHHH-HhcCCCcHHH--HHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 450 PLIRTY-AAAGRTSPVM--LRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 450 ~l~~~~-~~~g~~~~~~--~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
.++-.| .+.|++..++ ++. .-..+.-|-++.++|.++|-
T Consensus 664 lmiasc~rrsgnyqka~d~yk~-~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 664 LMIASCFRRSGNYQKAFDLYKD-IHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHHHHHhcccHHHHHHHHHH-HHHhCccchHHHHHHHHHhc
Confidence 887665 4557755554 322 22356677788899999884
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=5.5e-12 Score=114.96 Aligned_cols=404 Identities=12% Similarity=0.061 Sum_probs=254.5
Q ss_pred HHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CC
Q 011226 44 NQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK--TVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TS 120 (490)
Q Consensus 44 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~ 120 (490)
..+...|...+...|..-...+-..|..--+..+....+..|+.- -..++..-.+.|.+.+.++-|..+|....+ .+
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 445556666777777776666666666666666666665555432 234556666666677777777777766666 33
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
.+...|...+..--..|..+.-..+|++....- +.....|.....-+...|+...|..++....+... -+...|..-+
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaav 625 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAV 625 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 445566666665556666666666666666542 23344455555556666777777776666665432 2455666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCC
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGN 279 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 279 (490)
+....+.+++.|..+|.+... ..++...|..-++..--.++.++|.+++++..+. + |+ .-.|-.+.+.+-+.++
T Consensus 626 Kle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f-p~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-F-PDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C-CchHHHHHHHhHHHHHHHH
Confidence 666666677777777766655 3355666655555555566666777766666553 2 23 3345555566666666
Q ss_pred hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 280 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
.+.|...|..-.+.-+ -..-.|..+...=-+.|.+-.|..+++...-.++. +...|-..|+.-.+.|..+.|..++.+
T Consensus 701 ie~aR~aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666655443221 12234444444445566666666666666665555 666666666666666666666666555
Q ss_pred HHHc-----------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-
Q 011226 360 ARRR-----------------------------GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS- 409 (490)
Q Consensus 360 ~~~~-----------------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~- 409 (490)
.++. .+.-|....-.+...+-...++++|.+.|.+.++.+ ||
T Consensus 779 ALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--------~d~ 850 (913)
T KOG0495|consen 779 ALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--------PDN 850 (913)
T ss_pred HHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--------Ccc
Confidence 5432 123344445555666777788999999999999998 55
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
..+|..+...+.++|.-+.-.+++.+.....| .....|.+..+--....+..+.+
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP-~hG~~W~avSK~i~n~~~t~~ei 905 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEP-THGELWQAVSKDIKNWRKTPEEI 905 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhccCC-CCCcHHHHHhhhHHhccCCHHHH
Confidence 78899999999999999999999999999888 66667766665554444433333
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=2.9e-16 Score=139.13 Aligned_cols=259 Identities=16% Similarity=0.108 Sum_probs=72.9
Q ss_pred HHHHHHhhCCHHHHHHHHhhcC-CC-CC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLP-ET-SK-NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~-~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
+...+.+.|++++|.++++... .. +| |...|..+.......++++.|.+.++++...+. -+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 3445555566666666663322 22 22 233344444444455666666666666655443 134444444444 4555
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
++++|.+++....+.. ++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|++++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666555443321 34444555555556666666666666665543323445555555666666666666666666
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 011226 253 KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 332 (490)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 332 (490)
++..+..+ -|......++..+...|+.+++.++++...+.. ..+...+..+..++...|+.++|...|+...+..+.
T Consensus 170 ~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 66555432 134455555555566666666555555554443 223344455555566666666666666665554433
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
|+.....+..++...|+.++|..+.+++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55555555566666666666665555443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=1.4e-13 Score=127.54 Aligned_cols=285 Identities=9% Similarity=-0.004 Sum_probs=200.3
Q ss_pred hCCHHHHHHHHhhcCCCCCCHhHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhcCCCCcHHH
Q 011226 103 VQGIDAAENYFVDLPETSKNHLTYGSL-LNCYCKELMTEKAEALLEKMKELNLGFSSMPFN--SLMTLYAKTGHPEKIPA 179 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 179 (490)
.|+++.|.+.+.......+++..+..+ .....+.|+++.|.+.+.++.+.. |+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 488888888777765533333433333 344477888888888888887754 4543332 33567777888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 180 IIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW------TTFSNLASIYVEAGLFEKAERALK 253 (490)
Q Consensus 180 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~ 253 (490)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+...+.. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887764 2256667777888888888888888888888875222211 122333333344455566666666
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 011226 254 ELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD 333 (490)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 333 (490)
.+.+. .+.+......+...+...|+.++|.+++++..+.. ++... .++.+....++.+++.+..+...+..+. |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence 65442 23467777888888888999999999888887632 33321 2344444568888888888888887665 7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778888888899999999999999988874 688888888888899999999999988887654
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=2.3e-13 Score=126.99 Aligned_cols=286 Identities=12% Similarity=0.082 Sum_probs=203.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcch-HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh--hHHHHHHHHHHcCChhH
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMP-FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY--TYNVWMRALAAVNDISG 211 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 211 (490)
..|+++.|.+.+.+..+.. |+... +-....++.+.|+++.|.+.+.+..+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 4699999999998877654 44333 3344566778899999999998887643 4432 33345778888999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH-HHHHHH---HhcCChhHHHHHH
Q 011226 212 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ-FLITLY---GQTGNLSEVYRIW 287 (490)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 287 (490)
|...++.+.+. .|-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+
T Consensus 172 Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 172 ARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999887 5667778888999999999999999999999887653 333232 111111 2233333334455
Q ss_pred HHHHHhCCC---CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH--HHhcCChhHHHHHHHHHHH
Q 011226 288 RSLRLAFPN---TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA--YAKEGRLENAEELKERARR 362 (490)
Q Consensus 288 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~ 362 (490)
..+....+. .+...+..+...+...|+.++|.+++++..+..+......+. ++.. ....++.+.+.+.++...+
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHH
Confidence 555444332 266777888889999999999999999988865543221111 2222 2345777888888888887
Q ss_pred cCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 363 RGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEK--AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 363 ~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
. .|+. ....++...+.+.|++++|.+.|+. ..+.. |+...+..+...+.+.|+.++|.+++++..
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~--------p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ--------LDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 3443 4456778889999999999999994 55554 888888899999999999999999999875
Q ss_pred H
Q 011226 438 K 438 (490)
Q Consensus 438 ~ 438 (490)
.
T Consensus 398 ~ 398 (409)
T TIGR00540 398 G 398 (409)
T ss_pred H
Confidence 5
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.6e-16 Score=140.86 Aligned_cols=261 Identities=17% Similarity=0.133 Sum_probs=115.6
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHHcC
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKRG-MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET-SKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~ 137 (490)
.+...+.+.|++++|+++++...... .+.+...+..+.......++++.|...++.+... +-++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 56788889999999999997654443 2334444555666777889999999999999983 3346677777777 7899
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCCHhhHHHHHHHHHHcCChhHHHHHH
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-IMPDSYTYNVWMRALAAVNDISGAERVI 216 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 216 (490)
++++|.++++...+.. ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998876654 567778889999999999999999999987542 3457788888999999999999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 217 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
++..+. .|.|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++.....+.
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999997 66778889999999999999999999998887754 356667888999999999999999999999887653
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 297 TANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|......+..++...|+.++|.++.+++..
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 777788999999999999999999887643
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.2e-12 Score=112.91 Aligned_cols=378 Identities=14% Similarity=0.078 Sum_probs=263.2
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH---HH
Q 011226 87 NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPF---NS 163 (490)
Q Consensus 87 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ 163 (490)
..|...+-.....+.+.|..+.|...|...... -+..|.+.+....-.-+.+.+. ..... . |....| -.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~----~l~~~-l-~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILS----ILVVG-L-PSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHH----HHHhc-C-cccchHHHHHH
Confidence 445544444555566778888888888776652 2334444443332223333222 22221 1 211112 12
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHH
Q 011226 164 LMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA---DWTTFSNLASIYV 240 (490)
Q Consensus 164 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 240 (490)
+..++....+.+++..-.......|++-+...-+....+.....|+++|+.+|+++.+. .|- |..+|+.++-.-.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHh
Confidence 33455566677888888888888887766665566666777888999999999999986 343 4556665554322
Q ss_pred HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHH
Q 011226 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK 320 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 320 (490)
.... +..+..-.-.--+--+.|...+.+-|.-.++.++|...|+...+.++. ....|+.+..-|....+...|.+
T Consensus 311 ~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 2111 111111111111223457777888888899999999999999887765 46678889999999999999999
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011226 321 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 400 (490)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 400 (490)
-++...+.++. |-..|-.|.++|...+...=|+-.|++..+.. +-|...|..|..+|.+.++.++|+..|......|-
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999998776 88999999999999999999999999999863 33788999999999999999999999999998872
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCC-CHHhHHHHHHHHHhcCCCcHHHHHHHhhCCC
Q 011226 401 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA----V-DDL-GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 474 (490)
Q Consensus 401 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~ 474 (490)
.+...+..|...|.+.++.++|...|++.++. | ..+ ...+.--|...+.+.+++.++-...++....
T Consensus 464 -------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 -------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred -------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 46788999999999999999999999888762 2 212 3445555788888888888877766666655
Q ss_pred CCCHHHHHHHHHhh
Q 011226 475 EVSEASKKLLEAIC 488 (490)
Q Consensus 475 ~p~~~~~~~l~~~c 488 (490)
.+.-.--+.|.+-|
T Consensus 537 ~~e~eeak~LlRei 550 (559)
T KOG1155|consen 537 ETECEEAKALLREI 550 (559)
T ss_pred CchHHHHHHHHHHH
Confidence 66555545444433
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=2.7e-13 Score=126.50 Aligned_cols=291 Identities=10% Similarity=0.038 Sum_probs=194.4
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHhcCCCCcHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLT-YGSLLNCYCKELMTEKAEALLEKMKELNLGFSSM--PFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~ 178 (490)
..|+++.|.+.+....+..|+... +-.........|+++.|.+.+++..+.. |+.. ..-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 458888888888777665555433 3444566777788888888888876644 4432 3334567777788888888
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHH
Q 011226 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS-NLAS---IYVEAGLFEKAERALKE 254 (490)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~A~~~~~~ 254 (490)
..++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+ . .+...+. .-.. .....+..+++.+.+..
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888887764 2255667777888888888888888888888874 2 2333221 1111 11223333333445555
Q ss_pred HHHccCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 255 LENRNAH---RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 255 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
+...... .+...+..+...+...|+.++|.+++++..+..+......+ ....-.....++.+.+.+.++...+..+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 5443221 36777788888888888888888888888876543222111 1112222345677788888888776655
Q ss_pred CCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 331 TYDI--RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 331 ~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
. |+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++....
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 55 6667888888899999999999985444334688888888888899999999999999886554
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.8e-13 Score=112.18 Aligned_cols=277 Identities=16% Similarity=0.202 Sum_probs=184.1
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHcCCHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A 248 (490)
+++.++|.+.|-+|.+.. +-+..+..+|.+.|.+.|..+.|+++.+.+.++...+.+. .....|..-|...|-+|+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456778888888777642 1233444567777778888888888888777753222211 2234566777778888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch----hHHHHHHHHHhcCChhhHHHHHHH
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
..+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+... .|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888887776432 234566677778888888888888877777665544322 345555556667777888888887
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 011226 325 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG 404 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 404 (490)
..+.+++ .+..-..+.+.+...|+++.|.+.++...+.+..--..+...+..+|.+.|+.++...++..+.+..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~----- 279 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN----- 279 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence 7776555 4555556677777788888888888888777554445566777778888888888888888877775
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+....-..+........-.+.|...+.+-+... |+...+..|+..-....+
T Consensus 280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 280 ---TGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAE 330 (389)
T ss_pred ---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhcccc
Confidence 454455555555555555666666665555544 577777777776654443
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=9.6e-13 Score=124.24 Aligned_cols=349 Identities=15% Similarity=0.142 Sum_probs=269.0
Q ss_pred HHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHH
Q 011226 100 VAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 178 (490)
+.-.|++++|.+++.+++. .+.+...|.+|...|-..|+.+++...+-..-.... .|...|..+.....+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHH
Confidence 3344999999999999988 666788999999999999999999998877666544 56688999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-CHHHHH----HHHHHHHHcCCHHHHHHHHH
Q 011226 179 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFS----NLASIYVEAGLFEKAERALK 253 (490)
Q Consensus 179 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----~l~~~~~~~~~~~~A~~~~~ 253 (490)
-+|.+.++.. +++...+---...|-+.|+...|..-|.++... .+| |..-+. ..++.+...++-+.|.+.++
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~--~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQL--DPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999874 345445555667889999999999999999997 343 333222 34666777888899999998
Q ss_pred HHHHc-cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC----------------------CCCchhHH----HHH
Q 011226 254 ELENR-NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP----------------------NTANISYL----NMI 306 (490)
Q Consensus 254 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~----~l~ 306 (490)
..... +-..+...++.++..+.+...++.|......+..... .++...|. -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 87662 2224566788999999999999999988877765111 11222221 223
Q ss_pred HHHHhcCChhhHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGC--ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
-++...+..+...-+...+.... +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34445555555555555555554 5556778899999999999999999999999986444467789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH--------cCCCCCHHhHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK--------AVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~ 455 (490)
+++|++.++..+... |+ ...-..|...+.+.|+.++|.++++.+.. ....|+..........|
T Consensus 465 ~e~A~e~y~kvl~~~--------p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA--------PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHHHHHHHhcC--------CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 999999999999987 54 66667788889999999999999999653 23335666777778888
Q ss_pred HhcCC
Q 011226 456 AAAGR 460 (490)
Q Consensus 456 ~~~g~ 460 (490)
.+.|+
T Consensus 537 ~~~gk 541 (895)
T KOG2076|consen 537 FQVGK 541 (895)
T ss_pred HHhhh
Confidence 88888
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.5e-14 Score=128.92 Aligned_cols=203 Identities=16% Similarity=0.041 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
+.+|-++..+|.-.++.+.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+......++ +...|--|...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhh
Confidence 344444444444444555555544444442221 3344444444444444445555544444433222 22333334444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc
Q 011226 344 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE 423 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 423 (490)
|.+.++++.|.-.|+.+.+-++. +.+....+...+.+.|+.++|+++++++..... -|+..-..-+..+...
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-------kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-------KNPLCKYHRASILFSL 570 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-------CCchhHHHHHHHHHhh
Confidence 44555555555555444443221 222333333344444455555555555444431 1222222223334444
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCC
Q 011226 424 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVS 477 (490)
Q Consensus 424 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~ 477 (490)
+++++|...++++++.-| .+..++..+.+.|.+.|+...++...-.+..+.|.
T Consensus 571 ~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 571 GRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred cchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 445555555555544444 44444445555555555544444444444444443
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.6e-14 Score=128.30 Aligned_cols=288 Identities=14% Similarity=0.042 Sum_probs=232.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--CCCCHhhHHHHHHHHHHcCChhHHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAE 213 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~ 213 (490)
.-+..+|...|+.+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+-.+-+ +-++
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34678999999996654 32344666778889999999999999999998752 11256677777655422 2233
Q ss_pred H-HHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 214 R-VIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 214 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
. +-+.+.+. .+..+.+|.++.++|.-+++.+.|++.|++..+... ....+|+.+..-+.....+|.|...|+..+.
T Consensus 407 s~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 407 SYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3 33445554 778899999999999999999999999999987432 2678999999999999999999999998854
Q ss_pred hCCCCCchhH---HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011226 293 AFPNTANISY---LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369 (490)
Q Consensus 293 ~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 369 (490)
.|...| .-+...|.+.++++.|+-.|+...+.++. +.+....+...+.+.|+.|+|+++++++...+.+ |+
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 344444 45778899999999999999999998887 7778888889999999999999999999987655 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
..--..+..+...+++++|+..++++.+.- |+ ..+|..+...|.+.|+.+.|..-|..+.+++|++..
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 555556677888899999999999999875 65 777888899999999999999999999999986543
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=4.2e-12 Score=109.35 Aligned_cols=291 Identities=13% Similarity=0.078 Sum_probs=213.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERV 215 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 215 (490)
.|+|..|+++..+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-+..+.....||.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 58999999998887776642 24455566667778888999999988887753345566666777788888899999988
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHhcCChhHHHHHHH
Q 011226 216 IEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+.++.+. .+-++........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...|+
T Consensus 176 v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 8888887 5667777888888999999999999999999888775543 456666666666666666566666
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 368 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 368 (490)
..... .+-++..-.+++.-+...|+.++|.++..+..+.+..|+. ...-.+.+.++.+.-++..+.-.+.. .-+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 65433 2334555667777888888888888888888877766541 12223455667777677666666542 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
+..+..+...|.+.+.+.+|.+.|+...+.+ |+..+|..+.+++.+.|+.++|..+.++.+..-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 4667778888888888888888888888776 888888888888888888888888888877544333
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.2e-11 Score=105.78 Aligned_cols=377 Identities=17% Similarity=0.096 Sum_probs=266.6
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHH-HHHHHHHHHcCCHHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTY-GSLLNCYCKELMTEK 141 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~ 141 (490)
..+.+.|..+.|.+.|......- +-....|..|...+ .+.+.+..+...+... +...- -.+..++-...+.++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~l~~~l~~~--~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSILVVGLPSD--MHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHHHHhcCccc--chHHHHHHHHHHHHHHHHHHH
Confidence 34566788888999888876553 34555555554444 3344444433333320 11111 234466777778999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI--MPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
+.+-.+.....|.+.+...-+....+.-...++++|+.+|+++.+... --|..+|..++-.- ..+-..+ -+-+..
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~skLs-~LA~~v 322 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDKSKLS-YLAQNV 322 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhhHHHH-HHHHHH
Confidence 999999999988844444444444556678899999999999988731 11556776665433 2222211 111222
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc
Q 011226 220 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299 (490)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (490)
... ..--+.|...+.+.|.-.++.++|...|++..+.+. .....|+.+..-|...++...|.+-++..++-++. |-
T Consensus 323 ~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-Dy 398 (559)
T KOG1155|consen 323 SNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DY 398 (559)
T ss_pred HHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hH
Confidence 222 344556777899999999999999999999998664 35678999999999999999999999999886653 77
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011226 300 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 379 (490)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (490)
..|-.|.++|.-.+...-|.-.|++.....+. |...|.+|.++|.+.++.++|++.|.+....|-. +...+..+...|
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLy 476 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLY 476 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 78999999999999999999999999987665 8999999999999999999999999999986533 557888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
-+.++.++|...|++.++.... .+...|. .....-|..-+.+.+++++|..........+ +...--+.|++.+.+
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~-eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~--~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSEL-EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE--TECEEAKALLREIRK 552 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC--chHHHHHHHHHHHHH
Confidence 9999999999999988774200 0001232 2333345667788999999988776666543 344444455554443
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=6.9e-12 Score=110.51 Aligned_cols=391 Identities=11% Similarity=0.019 Sum_probs=257.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCC
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKT-VSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELM 138 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 138 (490)
.-..+.++|++++|++.|.+.+... |+ +.-|.....+|...|+|+++.+.-....+..|+ +..+..-..++-..|+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence 3446778999999999999998775 66 667788888899999999999888888886666 4467777778888888
Q ss_pred HHHHHHHHHHH-HhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHH-CC--CCCCHhhHHHHHHHH-----------
Q 011226 139 TEKAEALLEKM-KELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKA-SS--IMPDSYTYNVWMRAL----------- 203 (490)
Q Consensus 139 ~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~p~~~~~~~l~~~~----------- 203 (490)
+++|+.=+.-. +..|+ .|..+--.+=+.+-+ .|....++-.+ .+ +-|......+....+
T Consensus 199 ~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 88776432221 11111 111111111011111 01111111111 11 112222222211111
Q ss_pred ------------HH--cC---ChhHHHHHHHHHHHCCCCCC-----CH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 204 ------------AA--VN---DISGAERVIEEMKRDGRVAA-----DW------TTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 204 ------------~~--~~---~~~~a~~~~~~~~~~~~~~~-----~~------~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
.. .+ .+..|...+.+-.......+ |. .+......-+.-.|+.-.|..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 01 22333333322211110111 11 11111222233468889999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 011226 256 ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR 335 (490)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (490)
+.....++ ..|-.+..+|....+.++.+..|+.....++. ++.+|..-.+.+.-.++++.|..-|++..+..+. +..
T Consensus 353 I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 353 IKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred HhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 88655433 33777888899999999999999999887765 6667877788888889999999999999988776 777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCC-cCCHHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKW-VPSSETIR 414 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~p~~~~~~ 414 (490)
.|..+.-+..+.+++++++..|++.+++ ++--+..|+.....+...+++++|.+.|+..++...+....+ .+-+.+..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 7777777788899999999999999986 455678999999999999999999999999998862111100 11122223
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.++. +.-.+++..|..+++++.+.+| ....+|..|...-.+.|+..+++
T Consensus 509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 509 ALLV-LQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hHhh-hchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHH
Confidence 3332 2234899999999999999999 88899999999999999966654
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=4.1e-12 Score=109.41 Aligned_cols=284 Identities=12% Similarity=0.098 Sum_probs=203.5
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC--CCCHhHHHHHHHHHHHcCCHHHHHHH
Q 011226 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET--SKNHLTYGSLLNCYCKELMTEKAEAL 145 (490)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~ 145 (490)
.|+|.+|.....+-.+.+-.| ...|....++..+.|+.+.+-.++.++.+. .++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 688889988888877777443 445666667777888888888888888874 45556677777788888888888888
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 146 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-------YTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
++++.+.+. .+.........+|.+.|++..+..++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888887764 45677788888888888888888888888888765444 3466666666666666665666666
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 298 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (490)
..+. ...++..-..++.-+.+.|+.++|.++.++..+++..|+.. . .-.+.+.++.+.-++..+.-.+..+. +
T Consensus 255 ~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred ccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 6665 45555556677888888888888888888887776655511 1 12345667777666666665555432 4
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
+..+.+|...|.+.+.+.+|...|+...+. .|+...|+.+.+++.+.|+..+|.++.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 466677777778888888888888765553 45777777778888888888888777777664
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.2e-10 Score=102.59 Aligned_cols=388 Identities=10% Similarity=0.029 Sum_probs=242.2
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCY 133 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 133 (490)
+...+...+..=.+++.+..|..+++.....-...|. .|...+..--..|++..|.++|+.-.+..|+...|.+.|..-
T Consensus 106 ~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 106 NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFE 184 (677)
T ss_pred cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4444555666667788888888888888766422232 233444445567888888999888888788888898888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-CC-CCCHhhHHHHHHHHHHcCChhH
Q 011226 134 CKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SI-MPDSYTYNVWMRALAAVNDISG 211 (490)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 211 (490)
.+.+.++.|..++++..-.. |++.+|--....-.+.|+...|..+|....+. |- ..+...|++....-.++..++.
T Consensus 185 lRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred HHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999888887744 88888888888778888888888888776653 10 0112223333333333344444
Q ss_pred HHHHHHHHHHCC------------------------------------------CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 212 AERVIEEMKRDG------------------------------------------RVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 212 a~~~~~~~~~~~------------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
|.-+|.-.+..- ..+.|..+|-..+..-...|+.+...
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ir 342 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIR 342 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHH
Confidence 444444443320 14555566666666666667777777
Q ss_pred HHHHHHHHccCCCCH--HHHHHH----HH----HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH----HHhcCCh
Q 011226 250 RALKELENRNAHRDL--SAYQFL----IT----LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV----LVNLKDL 315 (490)
Q Consensus 250 ~~~~~~~~~~~~~~~--~~~~~l----~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~ 315 (490)
++|++.... ++|-. ..|... |+ .-....+.+.+.++|+...+. ++...+||.-+--. -.++.++
T Consensus 343 e~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l 420 (677)
T KOG1915|consen 343 ETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNL 420 (677)
T ss_pred HHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHccc
Confidence 777776653 32321 111111 11 112346666777777766653 22234444333222 2356677
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011226 316 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA 395 (490)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 395 (490)
..|.+++...... -|-..+|...|..-.+.++++.+..+++..++.++. +..+|......-...|+.+.|..+|+-+
T Consensus 421 ~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 421 TGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777777765543 345566666777777777788888888887776443 5566766666666777888888888777
Q ss_pred HhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 396 IDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 396 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
+.... .......|.+.|..-...|.++.|..+++++++... ...+|-++...-.
T Consensus 498 i~qp~-----ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~--h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 498 ISQPA-----LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ--HVKVWISFAKFEA 551 (677)
T ss_pred hcCcc-----cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc--cchHHHhHHHHhc
Confidence 76632 112345566666666777888888888888777553 4446655555443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=7.3e-12 Score=104.67 Aligned_cols=286 Identities=16% Similarity=0.140 Sum_probs=210.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH------hhHHHHHHHHHHcCCh
Q 011226 136 ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS------YTYNVWMRALAAVNDI 209 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~ 209 (490)
.++.++|.++|-+|.+.+. -+..+.-+|.+.|-+.|..|.|+++-+.+.+. ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4778899999988888542 34445567778888889999999988888764 332 2334566778888999
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHhcCChhHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD----LSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
|.|+.+|..+.+.| .--......|+..|-...+|++|++.-+++.+.+..+. ...|.-+...+....+.+.|..
T Consensus 124 DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99999999998864 33445667889999999999999999998888665544 2345556666667788999999
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
++.+..+.+++ .+..-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....+.++.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 99988877654 34444567788889999999999999999988777778888999999999999999999999887533
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKK 438 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 438 (490)
....-..+...-....-.+.|...+.+-+... |+...+..++..-.. .|...+-...++.|..
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRRK--------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--------CcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333344443344445566777766666665 999999888886654 3345555566666654
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=5.1e-11 Score=107.11 Aligned_cols=430 Identities=10% Similarity=-0.012 Sum_probs=301.6
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhc----CC---CCCC
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDL----PE---TSKN 122 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~---~~~~ 122 (490)
+...++.....+...+.-.|++.+|..+...-.-.+ -|..+......++.+..+++.|..++... .. ...+
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~--~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEK--RDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 334677777788888888899998888877664333 46777788888899999999999999843 22 2222
Q ss_pred H-h------HH-----HHHH-------HHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc------------
Q 011226 123 H-L------TY-----GSLL-------NCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKT------------ 171 (490)
Q Consensus 123 ~-~------~~-----~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------ 171 (490)
. . .+ +.-. ..|....+.++|...|.+....++. ....+..++....-.
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~ 200 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLD 200 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhccc
Confidence 1 0 01 0000 1244556777887777776654321 112222222211100
Q ss_pred -----CC-CCcHHHHHHHH----H------------HCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH
Q 011226 172 -----GH-PEKIPAIIQEM----K------------ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 229 (490)
Q Consensus 172 -----~~-~~~a~~~~~~~----~------------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (490)
+. .+....+|+-- . -.+..-+.........-+...+++.+..++++.+.+. .|+..
T Consensus 201 ~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~ 278 (611)
T KOG1173|consen 201 LAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHL 278 (611)
T ss_pred HHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCc
Confidence 00 01111111100 0 0112234444555566677889999999999999997 78888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
..+..-|.++...|+..+-..+=.++.+.- +....+|-++.--|...|+.++|.+.|.+.....+.- ...|..+..+|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHh
Confidence 888888889999999888888878887753 3467889999888889999999999999876544332 34678888999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
+-.|..|+|...+....+.-+. ...-+--+.--|.+.++.+.|.+.|.+..... +-|+...+-+.-.....+.+.+|.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~ 434 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEAL 434 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHH
Confidence 9999999999988887653222 11122234455888999999999999988752 235667777766677789999999
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHH
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRL 469 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m 469 (490)
.+|+..+..-.....+..--..+++.|..+|.+.+.+++|+..+++.+...+ .|..++.++.-.|...|+...|+-..=
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999888331110000111345789999999999999999999999999999 999999999999999999999998888
Q ss_pred hhCCCCCCHHHHHHHHHhhc
Q 011226 470 KMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 470 ~~~~~~p~~~~~~~l~~~c~ 489 (490)
++..+.|+..+..-+.+.|+
T Consensus 514 KaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 514 KALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHhcCCccHHHHHHHHHHH
Confidence 89999999988887777765
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=6.9e-10 Score=94.25 Aligned_cols=385 Identities=14% Similarity=0.036 Sum_probs=202.7
Q ss_pred CccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhh
Q 011226 36 DVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 115 (490)
...+..+++--...+.......-..+...+...|++++|+..+..+.... .++......+.-+..-.|.+.+|..+...
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 44444555443333333333334445566778899999999999987765 45555555566666677889999888877
Q ss_pred cCCCCCCHhHHHHHHHHHHHcC------------------------------CHHHHHHHHHHHHhCCCCCCcchHHHHH
Q 011226 116 LPETSKNHLTYGSLLNCYCKEL------------------------------MTEKAEALLEKMKELNLGFSSMPFNSLM 165 (490)
Q Consensus 116 ~~~~~~~~~~~~~li~~~~~~~------------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 165 (490)
..+ ++..-..|.....+.+ .+.+|++++.+.+..+ |+-...|.-+
T Consensus 117 a~k---~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ 191 (557)
T KOG3785|consen 117 APK---TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYM 191 (557)
T ss_pred CCC---ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHH
Confidence 765 2222222222222223 3455666666655543 4444444433
Q ss_pred H-HHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC---------------------
Q 011226 166 T-LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG--------------------- 223 (490)
Q Consensus 166 ~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------- 223 (490)
. +|.+..-++-+.++++...+. ++-++...|.......+.=+-..|++-...+...+
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 3 444555566666666655543 12122222222222222111111111111111100
Q ss_pred -----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC-------hhHHHH
Q 011226 224 -----------RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN-------LSEVYR 285 (490)
Q Consensus 224 -----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~ 285 (490)
...| ..--.|+-.|.+.++..+|..+.+++.. .++.-|-.-.-..+..|+ ..-|.+
T Consensus 271 EgALqVLP~L~~~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIP--EARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred ccHHHhchHHHhhCh--HhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 0111 1122344555666666666666655431 111111111111222222 233444
Q ss_pred HHHHHHHhCCCCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 286 IWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
.|.-+-..+..-|.. --.++..++.-..+++++...+..+...-...|...+| +.++++..|.+.+|.++|-++....
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ 423 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPE 423 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChh
Confidence 444333333322222 22344555555667777777777776655554444444 6788888899999999988776554
Q ss_pred CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 365 ADPNAKTWE-IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 365 ~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
++ |..+|- .+.++|.+++.++.|++++-++-..+ -.......+..-|.+.+.+--|.+.|+.+...+|.|
T Consensus 424 ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~--------e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 424 IK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS--------ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch--------hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44 455554 45567888899988887765543222 223334455567888888888888888888877643
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5e-12 Score=105.73 Aligned_cols=232 Identities=13% Similarity=0.083 Sum_probs=174.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 276 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (490)
+.+.++|.+.|-+.+|.+.++...+. .|-+.||..|.+.|.+..++..|+.++.+-.+. .+-|+....-+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 56778888888888888888887774 466777778888888888888888888877663 22344444556777777
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
.++.++|.++|+...+..+ .++.....+...|...++++.|..+++.+.+.|.. ++..|+.+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 8888888888888877654 25566666777777888888888888888888876 778888888888888888888888
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011226 357 KERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 434 (490)
Q Consensus 357 ~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 434 (490)
|++....--.|+. ..|-.+-......|++..|.+.|+-.+..+. .+...++.|.-.-.+.|+++.|..++.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-------~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-------QHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-------chHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 8887764333443 4566666666777888888888888877761 336778888777788888888888888
Q ss_pred HHHHcCC
Q 011226 435 ILKKAVD 441 (490)
Q Consensus 435 ~~~~~~~ 441 (490)
.+.+..|
T Consensus 454 ~A~s~~P 460 (478)
T KOG1129|consen 454 AAKSVMP 460 (478)
T ss_pred HhhhhCc
Confidence 8777665
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1.1e-11 Score=116.77 Aligned_cols=82 Identities=2% Similarity=-0.079 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
|++.+|..++.+-...|+.+.|..++.+|.+.|...+.+-|..++-+ .++...+..+++.|...|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45555555555555555555555555555555554444444444333 444455555555555555555555554444
Q ss_pred HHHHh
Q 011226 342 GAYAK 346 (490)
Q Consensus 342 ~~~~~ 346 (490)
..+..
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44444
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=4.4e-09 Score=96.48 Aligned_cols=421 Identities=16% Similarity=0.124 Sum_probs=272.6
Q ss_pred hhHHHHHHhhcCC--CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011226 22 EEALYDRLFKKGS--SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDL 99 (490)
Q Consensus 22 ~~~l~~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (490)
...+|+++.+... .-..-..+++.+.+ +.+....++.-.--.+...|+-++|.+........++ -+...|+.+.-.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHH
Confidence 4467777777543 22222333444444 4555555665555556778999999999988877663 466677777767
Q ss_pred HHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHH
Q 011226 100 VAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP 178 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 178 (490)
+-...++++|++.|..... .+-|...|.-+.-.-++.|+++........+.+... .....|..++.++.-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777899999999999888 455677888777777888999998888888887643 45677888888888999999999
Q ss_pred HHHHHHHHCC-CCCCHhhHHHHH------HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011226 179 AIIQEMKASS-IMPDSYTYNVWM------RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA 251 (490)
Q Consensus 179 ~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 251 (490)
.++++..+.. -.|+...+.... ......|..+.|.+.+..-... +......-..-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 9999998764 245665554332 3456678888888888776654 333344445667888899999999999
Q ss_pred HHHHHHccCCCCHHHHHHHH-HHHHhcCChhHHH-HHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 011226 252 LKELENRNAHRDLSAYQFLI-TLYGQTGNLSEVY-RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC 329 (490)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 329 (490)
+..+...+ ||...|...+ .++....+..++. .+|....+.-+.. ...-..=+.......-.+....++....+.|
T Consensus 242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 99998854 6666665544 4444444444454 5666655432211 1100000111111122233344555555666
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHH
Q 011226 330 ATYDIRVTNVMIGAYAKEGRLENAEELKERARR----RG----------ADPNAKTWE--IFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 330 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~----------~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~ 393 (490)
+.+ ++..+...|-.-...+-..++.-.+.. .| -+|....|. .++..+-..|+++.|..+++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 542 344444444332222211122211211 10 134544443 45667788899999999999
Q ss_pred HHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCc
Q 011226 394 KAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 394 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 462 (490)
..+... |+ +..|..=.+.+.-.|++++|..++++..+.+. +|...-.--++...++.+..
T Consensus 396 ~AIdHT--------PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 396 LAIDHT--------PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHhccC--------chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccH
Confidence 888876 76 55666667788888999999999999999888 88777777788888887733
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.4e-09 Score=98.56 Aligned_cols=424 Identities=15% Similarity=0.082 Sum_probs=243.8
Q ss_pred hhHHHHHHhhcCCCCccHHHHHH---HHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLN---QFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLD 98 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (490)
.+.++..+...+ ..+.+.+++. .+.. +.+.+...+..-+-++.+.++|++|+.+.+.-.... .+..-+-.-.-
T Consensus 12 ~~~l~t~ln~~~-~~~e~e~a~k~~~Kil~-~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAY 87 (652)
T KOG2376|consen 12 LEALLTDLNRHG-KNGEYEEAVKTANKILS-IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHHhc-cchHHHHHHHHHHHHHh-cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHH
Confidence 467777777766 3444554444 4333 336777778888888888888988885554321110 11111011123
Q ss_pred HHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH-hcCCCCcH
Q 011226 99 LVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYA-KTGHPEKI 177 (490)
Q Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 177 (490)
+..+.+..++|+..++.... -+..+...-...+-+.|++++|+++|+.+.+.+. + .+...+.+-+ ..+....+
T Consensus 88 c~Yrlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-d---d~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-D---DQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-c---hHHHHHHHHHHHHHHhhhH
Confidence 34477888999888885443 2333445555667788999999999998877653 2 2222222111 11111111
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHH---HHHHHcCChhHHHHHHHHHHHCCC------CCC--CHH-----HHHHHHHHHHH
Q 011226 178 PAIIQEMKASSIMPDSYTYNVWM---RALAAVNDISGAERVIEEMKRDGR------VAA--DWT-----TFSNLASIYVE 241 (490)
Q Consensus 178 ~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~-----~~~~l~~~~~~ 241 (490)
. .+......| ..+|..+. ..+...|++.+|+++++...+.+. ... +.. .-.-|...+-.
T Consensus 162 ~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 122222333 23444443 356678999999999998833210 111 111 11235556677
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHH----HHHHHHHHhcCChh-----------------HHHHHH-------------
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAY----QFLITLYGQTGNLS-----------------EVYRIW------------- 287 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-----------------~a~~~~------------- 287 (490)
.|+.++|.+++....+... +|.... |.|+. .....++. .++.-+
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999888765 343211 11211 11111110 000000
Q ss_pred ------------HHHHHhCCC-CCchhHHHHHHHHHh--cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 288 ------------RSLRLAFPN-TANISYLNMIQVLVN--LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 288 ------------~~~~~~~~~-~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
++.....+. .....+..++..+.+ ......+.+++....+..+.-...+.-..+......|+++.
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 001111111 112334444444332 22466777777777766655445666777888899999999
Q ss_pred HHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKE--------RARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 353 a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
|.+++. .+.+.+..|-.+ ..+...+.+.++-+.|..++.+.+..-......-..-..++..+...-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 556655555444 4566667777777777777777665421000000011233444445556789
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-CcHHH
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR-TSPVM 465 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~ 465 (490)
+.++|...++++.+..+ +|..+...++.+|++..- .++.+
T Consensus 473 ~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d~eka~~l 513 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNP-NDTDLLVQLVTAYARLDPEKAESL 513 (652)
T ss_pred chHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999 999999999999999776 45544
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=5.8e-11 Score=115.20 Aligned_cols=264 Identities=12% Similarity=0.041 Sum_probs=180.7
Q ss_pred CHhhHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHH
Q 011226 192 DSYTYNVWMRALAA-----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE---------AGLFEKAERALKELEN 257 (490)
Q Consensus 192 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~ 257 (490)
+...|...+++... .+++++|...|++..+. .|.+...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445555554322 23467899999999986 56666677777665542 2447899999999888
Q ss_pred ccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 011226 258 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT 337 (490)
Q Consensus 258 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (490)
..+ -+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...++...+..+. +...+
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 653 36777888888888999999999999999887654 4556777888899999999999999999887665 33333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTF 416 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l 416 (490)
..++..+...|++++|...++++.+...+-+...+..+..++...|++++|...+.++.... |+ ....+.+
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--------~~~~~~~~~l 481 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--------ITGLIAVNLL 481 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--------chhHHHHHHH
Confidence 44455566788999999999998765322234456677778889999999999998876664 54 3344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCC-CcHHHHHHHhhC
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTYAAAGR-TSPVMLRRLKME 472 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-~~~~~~~~m~~~ 472 (490)
...|...| +.|...++.+.+..- .+....+ +...|.-.|+ ....+++.+.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMWNKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHHHHhhcc
Confidence 55667777 477777777665322 1222222 4444444555 333444555544
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.2e-11 Score=103.61 Aligned_cols=262 Identities=14% Similarity=0.151 Sum_probs=213.0
Q ss_pred HHHHcCChhHHHHHHHHHHHC------C--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 202 ALAAVNDISGAERVIEEMKRD------G--RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~------~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
.|...+|+..|........+. | ....|+.--+.+.++|.+.|-+.+|.+.|+.-.+.- |-+.||-.|-+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskv 265 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKV 265 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHH
Confidence 345566777776544443321 1 133444445789999999999999999999887753 556688889999
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
|.+..++..|+.++.+..+.. |-.+|| .-+...+...++.++|.++++...+..+. ++.....+...|.-.++++.
T Consensus 266 Y~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHH
Confidence 999999999999999988754 445555 56778888899999999999999887655 78888888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC--HHHHHHHHHHHHhcCChHHHH
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~ 430 (490)
|+..++++...|+. +...|..+.-+|.-.++++-++..|++.+... ..|+ ..+|..+.......|++..|.
T Consensus 343 AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta------t~~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA------TQPGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc------cCcchhhhhhhccceeEEeccchHHHH
Confidence 99999999999987 88899999999999999999999999998875 2244 678989998899999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCH
Q 011226 431 GFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSE 478 (490)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~ 478 (490)
+.|+-.+..++ .+..++|.|.-.-.+.|+ .+.+++.. +..+.|+.
T Consensus 416 rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~--A~s~~P~m 462 (478)
T KOG1129|consen 416 RCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNA--AKSVMPDM 462 (478)
T ss_pred HHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHH--hhhhCccc
Confidence 99999999998 899999999999999999 44555554 33445553
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.3e-09 Score=90.77 Aligned_cols=371 Identities=12% Similarity=0.070 Sum_probs=233.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHc-CCH-HHH-------------HHHHHHHHhCC---
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKE-LMT-EKA-------------EALLEKMKELN--- 153 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~-~~a-------------~~~~~~~~~~~--- 153 (490)
.-...+.+|...++-+.|.......+.....+.. |.++.-+-+. ++- +.. +..+.-..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~i-nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRI-NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhH-HHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 3445677777888888998888888773222222 2222222222 221 211 12222222221
Q ss_pred ------------CCCCcchHHHHHHHHHh--cCCCCcHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 154 ------------LGFSSMPFNSLMTLYAK--TGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 154 ------------~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
.+|...+...-+.++++ .++...+...+-.+... -++-|+.....+.+++...|+.++|+..|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 22333333334444433 44445555544444333 2555777788889999999999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 298 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (490)
.... .+.+........-.+.+.|+.++...+...+.... .-+...|..-.......++++.|+.+-++.++.... +
T Consensus 258 ~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 258 TLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 8875 45555555555666677888888887777776532 123334444445556677888888888877665432 3
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 011226 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS-D 377 (490)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~ 377 (490)
...|..=...+...|+.++|.-.|+......+. +...|..|+.+|...|++.+|...-+...+. +.-+..+...+. .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcce
Confidence 334444445677788889998888887776543 7788999999999999998888777666553 223444544442 2
Q ss_pred HHH-hcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 378 YYL-RNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 378 ~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
.|. ...--++|..+++..++.. |+ ......+...|...|..++++.++++.+..- +|....+.|.+.+
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKIN--------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIM 481 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccC--------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence 222 2223467777777777665 66 4566677777888888888888888877644 6777888888888
Q ss_pred HhcCCCcHHHHHHHhhCCCCCCHH
Q 011226 456 AAAGRTSPVMLRRLKMEKVEVSEA 479 (490)
Q Consensus 456 ~~~g~~~~~~~~~m~~~~~~p~~~ 479 (490)
...+...+++-..-.+..+.|+..
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcCccch
Confidence 887777777777777777766554
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=4.9e-11 Score=103.21 Aligned_cols=197 Identities=18% Similarity=0.136 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 204 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 204 (490)
.+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 344444444444555555555544444321 223344444444444555555555554444432 112333444444455
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHH
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY 284 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 284 (490)
..|++++|...++...+....+.....+..+...+...|++++|...+++...... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555544321122233344444455555555555555555444321 12334444455555555555555
Q ss_pred HHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 011226 285 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
..+++..... ..+...+..+...+...|+.+.|..+.+.+
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555544431 122333334444444555555555544444
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=1.3e-10 Score=112.75 Aligned_cols=251 Identities=12% Similarity=0.012 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK---------TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++++|..+|++..+..+ -+...|..+..++.. .+++++|...+++..+.. +-+...+..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 35567777777666542 123344444433332 123456666666666543 1244555556666666677
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+++|...|+++.+. .|.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 77777777776665 4555566666666666777777777777766664332 12222233334555666677776666
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-GADP 367 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p 367 (490)
++......-+...+..+..++...|+.++|...+..+....+. +....+.+...|...| +.|...++.+.+. .-.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 6654432112333455556666667777777766665444222 3334444444555555 3555555555432 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 21222 22233444554444444 5555544
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=1.3e-10 Score=100.49 Aligned_cols=201 Identities=15% Similarity=0.066 Sum_probs=142.5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++..+... .+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 455666677777778888888888777765 455566777777777788888888888877776543 34556666777
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
.+...|++++|...++........+ ....+..+...+...|++++|...+.......+. +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 7777888888888887776542222 2334556677778888888888888887766544 4566777778888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+|...+++..+. ...+...+..+...+...|+.++|..+++.+...
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888888775 2335556666677777788888888887776554
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.45 E-value=2.7e-08 Score=91.27 Aligned_cols=389 Identities=12% Similarity=0.107 Sum_probs=252.8
Q ss_pred HhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC----------------------HHHHHHHH
Q 011226 56 WEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG----------------------IDAAENYF 113 (490)
Q Consensus 56 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~ 113 (490)
..+.++...|.+.|.+++|.++|++..+.- .+...|..+.++|+.-.. ++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 446778889999999999999999987664 355556666666653211 22233334
Q ss_pred hhcCCC-------------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC------cchHHHHHHHHHhcCCC
Q 011226 114 VDLPET-------------SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS------SMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 114 ~~~~~~-------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 174 (490)
+.+... +.++..|..-+. +..|+..+-...+.+.... +.|. ...|..+...|-..|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 443331 122333433332 2356777777788777653 2222 34677888889999999
Q ss_pred CcHHHHHHHHHHCCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC----------CCC------CHHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDISGAERVIEEMKRDGR----------VAA------DWTTFSNL 235 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~l 235 (490)
+.|..+|++..+-..+.- ..+|......-.+..+++.|.++++....... .++ +...|..+
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999998877543322 23455555666677788899998888765320 111 22345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch-hHHHHHHHHH---h
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLV---N 311 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~---~ 311 (490)
++.--..|-++....+++++.+..+. ++...-.....+-.+.-++++.+++++-+.....|+.. .|+..+.-+. .
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 66666778888899999999886553 33222222333455667889999998877766666554 3444443333 2
Q ss_pred cCChhhHHHHHHHHHhcCCCCChh-h-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIR-V-TNVMIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 387 (490)
....+.|..+|++..+..+ |... + |-.....--+.|-...|+.++++.... +.+.. ..|+..|.--+..=-+..
T Consensus 563 g~klEraRdLFEqaL~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4578999999999998544 3322 1 111122223468888899999997654 44433 467877765554444566
Q ss_pred HHHHHHHHHhcCCCCCCCCcCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCC
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPSSET---IRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
...+|+++++.- |+... ...+...-.+.|..+.|..++....+ .+|..+..-|.+.=.--.++|+
T Consensus 641 TR~iYekaIe~L--------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 641 TREIYEKAIESL--------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred cHHHHHHHHHhC--------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 678888888774 66433 34445566789999999999988777 5676788899998888899998
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.4e-09 Score=98.12 Aligned_cols=285 Identities=11% Similarity=0.009 Sum_probs=220.9
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 235 (490)
.+......-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+=.++.+. .|..+.+|-++
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhH
Confidence 44555566666777888999999999988776 3445555666677888999988888888888887 78888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCh
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 315 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (490)
.-.|...|+..+|.+.|.+....... =...|-.+...|+-.|..++|...+...-+.-+.. ..-+.-+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccH
Confidence 99999999999999999887653221 24578888899999999999999888776653321 11233345568889999
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 011226 316 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR--GADP----NAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 316 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
..|.++|.+.....+. |+...+.+.-.....+.+.+|..+|+..+.. .+.+ -..+++.+..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999998887665 7888888888888889999999999888731 1111 2345778888999999999999
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
..+++.+... .-+..++.++.-.|...|+++.|.+.|.+.+-..| .|..+-..|-.+
T Consensus 476 ~~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p-~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP-DNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-ccHHHHHHHHHH
Confidence 9999999886 25788999999999999999999999999998886 554444444433
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=9.2e-11 Score=110.78 Aligned_cols=222 Identities=14% Similarity=0.057 Sum_probs=139.0
Q ss_pred HHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCC
Q 011226 41 QQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS 120 (490)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 120 (490)
.++-.+...|..|+..+|.++|..|+..|+++.|- +|.-|.-...+.+...++.++......++.+.+. .
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------C
Confidence 45667777899999999999999999999999998 9999987777778888999998888888877765 4
Q ss_pred CCHhHHHHHHHHHHHcCCHHH---HHHHHHHHHh----CCC-----------------CCCcchHHHHHHHHHhcCCCCc
Q 011226 121 KNHLTYGSLLNCYCKELMTEK---AEALLEKMKE----LNL-----------------GFSSMPFNSLMTLYAKTGHPEK 176 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~~~~~~ 176 (490)
|...+|..|..+|...||+.. ..+.++.+.. .|+ -||.. .++......|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 788899999999999998765 2232222221 121 11111 11111122222222
Q ss_pred HHHHH------------------------------HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 011226 177 IPAII------------------------------QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA 226 (490)
Q Consensus 177 a~~~~------------------------------~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 226 (490)
+++++ +......-.|++.+|.+++.+....|+.+.|..++.+|.+.| ++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FP 236 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CC
Confidence 22222 211111113566666666666666666666666666666666 65
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 011226 227 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (490)
.+..-|-.|+-+ .++...+..++..|...|+.|+..|+...+..+..+|.
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 555554444443 55555566666666666666666666655555555443
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.42 E-value=1.4e-08 Score=95.25 Aligned_cols=368 Identities=13% Similarity=0.036 Sum_probs=249.7
Q ss_pred CCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-cchHH
Q 011226 85 GMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS-SMPFN 162 (490)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 162 (490)
.+.-+...|..+.-++.++|+++.+.+.|++... .......|+.+...|...|.-..|..+++.-......|+ ...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445677888888888899999999999998776 445567888898899999999999999988665442243 33333
Q ss_pred HHHHHHH-hcCCCCcHHHHHHHHHHC--C----CCCCHhhHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCC
Q 011226 163 SLMTLYA-KTGHPEKIPAIIQEMKAS--S----IMPDSYTYNVWMRALAAV-----------NDISGAERVIEEMKRDGR 224 (490)
Q Consensus 163 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~----~~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 224 (490)
..-..|. +.+..++++++-.+.... + +.| ..|..+.-+|... ....++++.+++..+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~-- 473 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF-- 473 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--
Confidence 3333343 356677777777666552 1 222 2333333333221 1245777888888887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-C---C--
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-T---A-- 298 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~---~-- 298 (490)
.+.|+.+...+.--|...++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+........ - +
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 344555555566677888899999999999988766678889999988888999999999988876543221 0 0
Q ss_pred -------------chhHHHHHHHHH-----------------------hcCChhhHHHHHHHHH--------hcC-----
Q 011226 299 -------------NISYLNMIQVLV-----------------------NLKDLPGAEKCFKEWE--------SGC----- 329 (490)
Q Consensus 299 -------------~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~--------~~~----- 329 (490)
..|...++...- ..++..++....+.+. ..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 001111111111 0011111211111110 000
Q ss_pred ------CCCC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011226 330 ------ATYD------IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 330 ------~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
+.|+ ...|......+.+.+..++|...+.+..... ......|......+...|+..+|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111 1234456677788888999988888877652 22445566666677888999999999999998
Q ss_pred cCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHH
Q 011226 398 TGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEG--FLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 466 (490)
Q Consensus 398 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 466 (490)
.. |+ +...+++..++.+.|+..-|.. ++..+.+.+| .+..+|..|...+-+.|+...+..
T Consensus 713 ld--------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 713 LD--------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred cC--------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHH
Confidence 87 65 7788999999999999988888 9999999999 999999999999999999655543
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=9.4e-10 Score=103.19 Aligned_cols=186 Identities=12% Similarity=0.039 Sum_probs=122.8
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----C----------CCCCc--hhHHHHHHHHHh
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----F----------PNTAN--ISYLNMIQVLVN 311 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~ 311 (490)
+..++..+...|++ + +|+.+-..|....+..-..+++...... + -.|+. .++..+.+.|..
T Consensus 130 ~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 33444555555552 2 4555555555444444444444443321 0 12222 244556777888
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.|++++|.++++...+..+. .+..|..-.+.+-+.|++.+|.+.++...+.+.. |...-+..+..+.++|++++|.++
T Consensus 207 ~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999998887665 5778888888999999999999999999887554 555656667778899999999999
Q ss_pred HHHHHhcCCCCCCCCcCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 392 LEKAIDTGRGDGGKWVPSSETI--RTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+....+.+..|.....--.-.| .....+|.+.|++..|++.|..+.+
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9988877742111110001122 4556789999999999887766654
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=1.2e-09 Score=102.55 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
+..+...|-..|++++|+++++..+...+. .+..|..-...+-..|++.+|.+.++.....+.. |..+-+..+..+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 344555566666666666666666654332 2345555566666666666666666666665554 55555666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 347 EGRLENAEELKERARRRGADPNAK------TW--EIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
.|++++|.+++....+.+..|-.. .| .....+|.+.|++..|+..|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 677777766666665544322211 11 22234566677776666665555444
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.6e-09 Score=93.13 Aligned_cols=330 Identities=14% Similarity=0.018 Sum_probs=214.8
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcC
Q 011226 95 IHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTG 172 (490)
Q Consensus 95 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 172 (490)
...+-|.+.|.+++|++.+.+.++..|+ +..|.....+|...|+|++..+--...++.+ |+ +..+.--..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhc
Confidence 3456677889999999999999997788 7888999999999999999998888887754 43 334444455666677
Q ss_pred CCCcHHHHHHHH-HHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHH--------
Q 011226 173 HPEKIPAIIQEM-KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR--DGRVAADWTTFSNLASIYVE-------- 241 (490)
Q Consensus 173 ~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-------- 241 (490)
++++|+.=.... +-.|+. |..+--.+=+.+- ..|..-.++-.+ +....|+.....+....+..
T Consensus 198 ~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred cHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 777665433222 111222 1111111111111 112222222222 11133444333322222211
Q ss_pred -----------------cC---CHHHHHHHHHHHHHc-cCCC-----CH------HHHHHHHHHHHhcCChhHHHHHHHH
Q 011226 242 -----------------AG---LFEKAERALKELENR-NAHR-----DL------SAYQFLITLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 242 -----------------~~---~~~~A~~~~~~~~~~-~~~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (490)
.+ .+..|...+.+-... ...+ |. .+...-...+.-.|+.-.|..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 01 222232222221110 0001 11 1111111223446888899999999
Q ss_pred HHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 011226 290 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 369 (490)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 369 (490)
.+...+.++. .|.-+...|....+.++..+.|....+.++. |+.+|..-.+.+.-.+++++|..=|++.+..... +.
T Consensus 352 ~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~ 428 (606)
T KOG0547|consen 352 AIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NA 428 (606)
T ss_pred HHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hh
Confidence 9887665433 3777888899999999999999999998877 7788888888888899999999999999985322 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD 442 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 442 (490)
..|..+.-+..+.+++++++..|++..+.- +..+..|+.....+...++++.|.+.|+.++++.+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKKF-------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 556566666678899999999999999985 344899999999999999999999999999998874
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.6e-08 Score=85.81 Aligned_cols=314 Identities=11% Similarity=0.059 Sum_probs=225.3
Q ss_pred CCHhHHHHHHHHHHHc--CCHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhh-H
Q 011226 121 KNHLTYGSLLNCYCKE--LMTEKAEALLEKMKEL-NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT-Y 196 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~ 196 (490)
|+..+....+.+++.. ++...|...+-.+... -.+-|+.....+...+...|+.++|...|+..... .|+..+ .
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~M 269 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAM 269 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhH
Confidence 3333444455554443 4444444443333222 34467778889999999999999999999988764 343322 2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 276 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (490)
....-.+.+.|+.+....+...+... ..-+...|..-+......+++..|+.+-++..+... .+...+-.-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 22233456788888888888888775 334555555566666778899999999999887543 345566666677888
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH-HHHH-hcCChhHHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI-GAYA-KEGRLENAE 354 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~ 354 (490)
.|++++|.-.|+..+...+ .+...|.-|+.+|...|.+.+|.-+-+...+.-. .+..+...+. ..+. ....-++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHH
Confidence 9999999999999877543 3678999999999999999999877776554322 2555554442 2222 222347888
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 355 ELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 355 ~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
.+++...+. .|+- ...+.+...|...|..+.++.++++.+... ||....+.|.+.+...+.+++|.+.|
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--------~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--------PDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--------cccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 888887764 5554 455667778889999999999999999887 99999999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHH
Q 011226 434 EILKKAVDDLGVEVFEPLI 452 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~ 452 (490)
..+++.+| .|..+...|=
T Consensus 495 ~~ALr~dP-~~~~sl~Gl~ 512 (564)
T KOG1174|consen 495 YKALRQDP-KSKRTLRGLR 512 (564)
T ss_pred HHHHhcCc-cchHHHHHHH
Confidence 99999998 7766665443
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=1.5e-08 Score=86.28 Aligned_cols=369 Identities=13% Similarity=0.071 Sum_probs=193.9
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTE 140 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~ 140 (490)
+..+..++++..|+.+++.-...+-+-...+-.-+..++.+.|++++|...+..+.. ..++...+..|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 556677899999999998776554332223334455677799999999999998877 6677778888887777789999
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 011226 141 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK 220 (490)
Q Consensus 141 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 220 (490)
+|..+-....+ ++..-..|+....+.++-++-..+-+.+... ..--.+|.......-.+++|++++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887655332 2223334444445566655555544444321 1222345555555566778888888777
Q ss_pred HCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc--CC------------------
Q 011226 221 RDGRVAADWTTFSN-LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT--GN------------------ 279 (490)
Q Consensus 221 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~------------------ 279 (490)
.. .|.....|. +.-+|.+..-++-+.++++-..+. ++-++...|..+....+. |+
T Consensus 179 ~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 179 QD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred hc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 64 244444333 344556666677777777665553 222233333333322221 11
Q ss_pred ---------------hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 280 ---------------LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 280 ---------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
-+.|++++-.+.+. -| ..-..++-.|.+.+++.+|..+.+.+.-. .|-..+...+. +
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~ 326 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--F 326 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--H
Confidence 12233332222221 11 12223455577888888888777664321 12222222222 2
Q ss_pred HhcC-------ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 345 AKEG-------RLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 345 ~~~~-------~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
...| ...-|.+.|+-.-+.+..-|. .--.++...+.-..++++.+.++..+..-- ..|...-..+
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-------~NdD~Fn~N~ 399 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-------TNDDDFNLNL 399 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCcchhhhHH
Confidence 2222 234455555544333322221 112233333334444555555555444432 2333333345
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH-HHHHHHHhcCC
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE-PLIRTYAAAGR 460 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~ 460 (490)
..+.+..|++.+|+++|-++...++ .|..+|. .|.++|.+.|+
T Consensus 400 AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCC
Confidence 5566666666666666655544444 3333333 33444444444
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=3.2e-12 Score=79.40 Aligned_cols=49 Identities=29% Similarity=0.435 Sum_probs=30.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYA 169 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (490)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5566666666666666666666666666666666666666666666654
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.31 E-value=6.2e-07 Score=82.71 Aligned_cols=416 Identities=12% Similarity=0.086 Sum_probs=206.6
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhhCC---HHHHHHHHhhcCCCCCCH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG------MNKTVSDQAIHLDLVAKVQG---IDAAENYFVDLPETSKNH 123 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~ 123 (490)
.++..-...+..+++.+++++|-+.+....... .+.+...|..+.+..++.-+ --....+++.+....+|.
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence 344445566667777777777777777664322 12344455555555554322 223445555555544553
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC----------------------CCcHHH
Q 011226 124 --LTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGH----------------------PEKIPA 179 (490)
Q Consensus 124 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~ 179 (490)
..|.+|..-|.+.|.+++|.++|++....- .++.-|..+.++|++-.. ++-...
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 367777777888888888888877766542 345556666666653211 011112
Q ss_pred HHHHHHHCCC-----------CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH------HHHHHHHHHHHHc
Q 011226 180 IIQEMKASSI-----------MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW------TTFSNLASIYVEA 242 (490)
Q Consensus 180 ~~~~~~~~~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~ 242 (490)
-|+.+...+. +-++.+|..- .-+..|+..+-...|.++.+. +.|.. ..|..+...|-..
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhc
Confidence 2222222110 0011111111 112245566666666666665 44422 2356667777777
Q ss_pred CCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC-----------------chhH
Q 011226 243 GLFEKAERALKELENRNAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA-----------------NISY 302 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~ 302 (490)
|+++.|..+|++..+...+-- ..+|-.....=.+..+++.|+++++.....-..|. ...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 777777777777665433211 23344444444556666666666665543211110 1123
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLR 381 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 381 (490)
...++.--..|-++....+++.+.+..+. ++.+.......+-...-++++.+++++-+..=.-|+. ..|+..+..+.+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 33344444456666666666666655443 3333333333344555666777776665543222333 345555554432
Q ss_pred ---cCCHHHHHHHHHHHHhcCCCCCCCCcCCH-H-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHhHHHHHHHH
Q 011226 382 ---NGDMKLAVDCLEKAIDTGRGDGGKWVPSS-E-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-LGVEVFEPLIRTY 455 (490)
Q Consensus 382 ---~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 455 (490)
....+.|..+|+++++.. .|.. . .|-.....-.+.|-...|+.+++++...-.. .-...||.+|.--
T Consensus 560 rygg~klEraRdLFEqaL~~C-------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~ka 632 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALDGC-------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKA 632 (835)
T ss_pred HhcCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 235677777777777743 1321 1 1112222223456677777777776554331 1233444444433
Q ss_pred Hhc-CC-CcHHHHHHHhhCCCCCCHHHHHHH
Q 011226 456 AAA-GR-TSPVMLRRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 456 ~~~-g~-~~~~~~~~m~~~~~~p~~~~~~~l 484 (490)
... |- ....+++.-.+. -||.......
T Consensus 633 ae~yGv~~TR~iYekaIe~--Lp~~~~r~mc 661 (835)
T KOG2047|consen 633 AEIYGVPRTREIYEKAIES--LPDSKAREMC 661 (835)
T ss_pred HHHhCCcccHHHHHHHHHh--CChHHHHHHH
Confidence 222 22 333444443322 4555554443
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=2.1e-09 Score=99.69 Aligned_cols=245 Identities=17% Similarity=0.136 Sum_probs=178.4
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----cC-
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRD-----GRVAADWTT-FSNLASIYVEAGLFEKAERALKELENR-----NA- 260 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~- 260 (490)
..++..+...|...|+++.|+.+++...+. |...|...+ .+.+...|...+++++|..+|+++..- |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999999887764 222344443 345788899999999999999988652 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-----CC-CCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhc---C
Q 011226 261 HR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP-NTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESG---C 329 (490)
Q Consensus 261 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 329 (490)
.| -..+++.|..+|.+.|++++|...++...+. +. .|... .++.+...++..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 2456777888899999999998888765432 11 12222 3566778888999999999998875431 1
Q ss_pred CCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 330 ATY----DIRVTNVMIGAYAKEGRLENAEELKERARRR----GA--DP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 330 ~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+.+ -..+++.|...|...|++++|.++++.++.. +- .+ ....++.+...|.+.+++.+|..+|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2467899999999999999999999998753 11 11 2346677888899999999999999887655
Q ss_pred CCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 399 GRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 399 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
. +.-+.-.|+ ..+|..|...|...|+++.|.++.+.+..
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 111112344 67899999999999999999999988764
No 76
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=9.5e-12 Score=77.25 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=43.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 332 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888764
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=6.8e-09 Score=96.36 Aligned_cols=302 Identities=20% Similarity=0.214 Sum_probs=201.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHH-HHHH----HHHHhC--CCCCCcchHHHHH
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKA-EALL----EKMKEL--NLGFSSMPFNSLM 165 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a-~~~~----~~~~~~--~~~~~~~~~~~l~ 165 (490)
+...-..++..+.+++|...++..... ..+..|...+...-+.+.. ...+ -.+... +.+.-..+...+.
T Consensus 131 ~hl~~~~~~~~~~l~ea~~~~e~~~~~----~~~d~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La 206 (508)
T KOG1840|consen 131 LHLLAAIQALLLQLDEAEQGQEQAAVT----PVKDSLADLGGEKQEEDSSIEGTLKGLDIQAKGLGDEDPERLRTLRNLA 206 (508)
T ss_pred HHHHHHHHHHHHHhhhhhccccccccc----chhHHHHhhccccccccccchhhHHHHHHHHHhcccCCchHHHHHHHHH
Confidence 333444445566677777777666541 1133343333222221111 1111 111122 2222234556688
Q ss_pred HHHHhcCCCCcHHHHHHHHHHC-----CC-CCCHhh-HHHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC-CHHHH
Q 011226 166 TLYAKTGHPEKIPAIIQEMKAS-----SI-MPDSYT-YNVWMRALAAVNDISGAERVIEEMKRD-----GRVAA-DWTTF 232 (490)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~ 232 (490)
..|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |...| -..++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8999999999999999988764 21 233333 344777899999999999999998763 32333 34567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----cC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHh---CCCCCc---
Q 011226 233 SNLASIYVEAGLFEKAERALKELENR-----NA-HRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLA---FPNTAN--- 299 (490)
Q Consensus 233 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--- 299 (490)
+.|...|.+.|++++|...++...+- |. .|. ...++.+...++..+++++|..++....+. -+.++.
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~ 366 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNL 366 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHH
Confidence 88889999999999999888876431 11 122 234566777889999999999998866432 122222
Q ss_pred -hhHHHHHHHHHhcCChhhHHHHHHHHHhcC----C--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCC-
Q 011226 300 -ISYLNMIQVLVNLKDLPGAEKCFKEWESGC----A--TY-DIRVTNVMIGAYAKEGRLENAEELKERARR----RGAD- 366 (490)
Q Consensus 300 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~- 366 (490)
.+++.+...|...|++++|.++++.+.... . .+ ....++.|...|.+.+++.+|.++|.+... .|+.
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~ 446 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH 446 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999975421 1 11 234667888999999999999999987653 3332
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 367 PN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 367 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
|+ ..+|..|...|...|+++.|+++.+.....
T Consensus 447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 447 PDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 23 357889999999999999999998887743
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=5e-07 Score=83.41 Aligned_cols=369 Identities=12% Similarity=0.055 Sum_probs=240.3
Q ss_pred CHHhHHHHHHH-HhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHH
Q 011226 54 FKWEVGDTLKK-LRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLN 131 (490)
Q Consensus 54 ~~~~~~~ll~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~ 131 (490)
-+....+++.. +...+++++|+..|......+ +.|...+..+.-.-++.|+++........+.+..| ....|..++.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av 151 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV 151 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 34444444444 445688999999999998887 45777787777777788999888888777777334 4567888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCCCcchHHHHHH------HHHhcCCCCcHHHHHHHHHHCCCCCCHhh-HHHHHHHH
Q 011226 132 CYCKELMTEKAEALLEKMKELN-LGFSSMPFNSLMT------LYAKTGHPEKIPAIIQEMKASSIMPDSYT-YNVWMRAL 203 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~ 203 (490)
++.-.|+...|..++++..+.. -.|+...|..... ...+.|..++|++.+..-... +. |... -..-...+
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHH
Confidence 9999999999999999988754 2466666643332 344577778888777655432 21 2222 23445678
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHccCCCCHHHHH-HHHHHHHhcCChh
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE-RALKELENRNAHRDLSAYQ-FLITLYGQTGNLS 281 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~ 281 (490)
.+.+++++|..++..++.. .|.+...|..+..++.+..+.-++. .+|....+. + |....-. .=++......-.+
T Consensus 230 ~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-PRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-cccccchhccHHHhCcchhHH
Confidence 8999999999999999997 6666666666777776444444444 666655442 1 1111111 1111111122223
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH----hcC----------CCCChhhH--HHHHHHHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE----SGC----------ATYDIRVT--NVMIGAYA 345 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~--~~li~~~~ 345 (490)
..-.++..+.+.|+. .++..+...|-.....+-..++...+. ..+ ..|....| -.++..+-
T Consensus 306 ~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D 382 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYD 382 (700)
T ss_pred HHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHH
Confidence 344455566666654 344445544433222221222222211 111 13444444 45778888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 346 KEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
..|+++.|...++....+ .|+. ..|..-.+.+.+.|++++|..++++..+... +|...-..-..-..+.+
T Consensus 383 ~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-------aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 383 KLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-------ADRAINSKCAKYMLRAN 453 (700)
T ss_pred HcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHcc
Confidence 999999999999999875 4554 3455556788999999999999999998863 66666556667778899
Q ss_pred ChHHHHHHHHHHHHcCC
Q 011226 425 DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~ 441 (490)
+.++|.++.....+.|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 99999999998887664
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=1.7e-08 Score=81.00 Aligned_cols=200 Identities=13% Similarity=0.007 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
+...|.-.|...|+...|..-+++.++. .|.+..+|..+...|.+.|+.+.|.+.|++.....+ -+..+.|...-.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHH
Confidence 3455677888999999999999999987 778888888999999999999999999998887543 3566777777788
Q ss_pred HhcCChhHHHHHHHHHHHhCC-CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFP-NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
|..|++++|...|++....-. .-...+|..+.-+..+.|+.+.|...|++..+..+. .......+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 889999999999998876522 112457888888888999999999999998887666 555667788888889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...++.....+. ++..+.-..|+.-...|+.+.+-++=.++.+.-
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999998887765 788888788888888899888888877777765
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.3e-07 Score=85.28 Aligned_cols=237 Identities=15% Similarity=0.106 Sum_probs=147.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH-----
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI----- 271 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~----- 271 (490)
..+.++..+..+++.|++.+...... . .+..-++....+|...|.+.+....-+...+.|.. ...-|+.+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el--~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALEL--A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhH--h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 34555556666666666666666664 2 44445556666666666666666655555444431 122222222
Q ss_pred --HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 272 --TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 272 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
.+|.+.++++.++..|.+.......|+. ..+....+++........-.++..-... ..-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~-r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEE-REKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHH-HHHHHHHHhccC
Confidence 2344455666666666665443333221 1122233344433333332222211111 122556778899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHH
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDG 428 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 428 (490)
+..|+..|.++++.++ -|...|..-.-+|.+.|.+..|++-.+..++.. |+ ...|.-=..++....+++.
T Consensus 374 y~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--------p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELD--------PNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 377888888899999999999999988888886 54 5566655667777788999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 429 AEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
|.+.|++.++.+| .+......+.+++..
T Consensus 445 Aleay~eale~dp-~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 445 ALEAYQEALELDP-SNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHhcCc-hhHHHHHHHHHHHHH
Confidence 9999999999987 676666666666654
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=1.1e-08 Score=90.90 Aligned_cols=232 Identities=13% Similarity=0.081 Sum_probs=124.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
..+.++.-+.+++......|+ ...|..+...|...|++++|...|++..+..+ .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555556556543211121 33455666666677777777777766666433 345666666667777777777777
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.|+...+..+. +...+..+..++...|++++|.+.++...+..+. +. ........+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77776664433 3345555666666677777777777776665443 22 11111122334556777777775544321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 444 (490)
.|+...+ .......|+...+ ..++.+.+.... .....| ....|..+...+.+.|++++|...|+++.+.+| +|
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~-~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~ 269 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATD-NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YN 269 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ch
Confidence 2222111 1222234444333 233333322100 000112 235677777778888888888888888887776 45
Q ss_pred HHhHHH
Q 011226 445 VEVFEP 450 (490)
Q Consensus 445 ~~~~~~ 450 (490)
..-+..
T Consensus 270 ~~e~~~ 275 (296)
T PRK11189 270 FVEHRY 275 (296)
T ss_pred HHHHHH
Confidence 444443
No 82
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=3.3e-07 Score=86.27 Aligned_cols=377 Identities=12% Similarity=0.009 Sum_probs=257.4
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC---CCCHhHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET---SKNHLTYGS 128 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~ 128 (490)
.-++..|..+.-++...|++..+.+.|+.....-+ .....|+.+.-.+...|.-..|..+++..... +++...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 34677788888888999999999999999876653 45667888888899999999999999887763 334444444
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhcC-----------CCCcHHHHHHHHHHCC-CCC
Q 011226 129 LLNCYCK-ELMTEKAEALLEKMKEL--NL--GFSSMPFNSLMTLYAKTG-----------HPEKIPAIIQEMKASS-IMP 191 (490)
Q Consensus 129 li~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~-~~p 191 (490)
.-..|.+ .+.++++++.-.+.... +. ......|..+.-+|...- ...++++.+++..+.+ -.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4444544 36777777766666551 11 123345555555554321 1346778888887654 234
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC----------
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH---------- 261 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------- 261 (490)
+...| +.--|+..++++.|.+..++..+.+ ...+...|..|+-.+...+++.+|+.+.+.....-..
T Consensus 479 ~~if~--lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 479 LVIFY--LALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred hHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 33333 3445678889999999999999986 6778888999999999999999999998876553111
Q ss_pred ---------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHHH--------HhC-------
Q 011226 262 ---------RDLSAYQFLITLYGQ-----------------------TGNLSEVYRIWRSLR--------LAF------- 294 (490)
Q Consensus 262 ---------~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~--------~~~------- 294 (490)
-...|...++...-. .++..++.+..+.+. ..+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222221110 011112222111110 001
Q ss_pred ----CCCCc------hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 295 ----PNTAN------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 295 ----~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
+.|+. ..|......+.+.++.++|...+.+.....+. ....|......+...|+.++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 01111 12334556677788888888888777766443 66777777788888999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 365 ADPNAKTWEIFSDYYLRNGDMKLAVD--CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+. +..+..++...+.+.|+..-|.. ++.++.+.+. .+...|..+...+.+.|+.+.|.+.|....++..
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-------~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-------LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 22 45677888999999998888887 9999999982 4699999999999999999999999999998776
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=9.6e-09 Score=82.40 Aligned_cols=193 Identities=15% Similarity=0.042 Sum_probs=99.4
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
+.-.|...|+...|..-+++..+..|+ ..+|..+...|.+.|+.+.|.+.|++...... .+..+.|..-..+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCCh
Confidence 333444555555555555555542222 33455555555555555555555555555432 3344555555555555555
Q ss_pred CcHHHHHHHHHHCCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 175 EKIPAIIQEMKASSI-MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK 253 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 253 (490)
++|...|++....-. .--..+|..+.-|..+.|+.+.|...|++..+. .+....+...+.....+.|++-.|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544311 112234555555555556666666666555554 34444444555555555666666665555
Q ss_pred HHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 254 ELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
.....+. ++..+.-..|+.--..|+.+.+-+.=..+..
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555444 5555555555555555555555554444444
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=6.4e-07 Score=81.82 Aligned_cols=386 Identities=12% Similarity=0.107 Sum_probs=221.1
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhH-HHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011226 24 ALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEV-GDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK 102 (490)
Q Consensus 24 ~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (490)
.+...+..+. ....+...+......+.......+ ..-+....+.+..++|+..++.+.+ .+..+...-...+.+
T Consensus 48 a~~cKvValI-q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYr 122 (652)
T KOG2376|consen 48 AIRCKVVALI-QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYR 122 (652)
T ss_pred hHhhhHhhhh-hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHH
Confidence 4444444433 455667777443333322222222 2334445578999999999983321 234466667788999
Q ss_pred hCCHHHHHHHHhhcCC-CCCCHh--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHH---HHHhcCCCCc
Q 011226 103 VQGIDAAENYFVDLPE-TSKNHL--TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMT---LYAKTGHPEK 176 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~-~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~ 176 (490)
.|++++|..+|+.+.+ ..++.. .-..++.+- .+... +.+......| ..+|..+-+ .++..|++.+
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~q 193 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQ 193 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------HhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHH
Confidence 9999999999999966 222211 111222111 11111 1122222223 345554443 4566888999
Q ss_pred HHHHHHHHHHCC-------------CCCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHH----HHHHHH
Q 011226 177 IPAIIQEMKASS-------------IMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF----SNLASI 238 (490)
Q Consensus 177 a~~~~~~~~~~~-------------~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~ 238 (490)
|++++....+.+ +.-+.. .-..+.-++-..|+-++|..++...++. .++|.... |.|+..
T Consensus 194 A~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 194 AIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhh
Confidence 999988873221 111111 1234555677889999999999888887 45554322 222211
Q ss_pred HHHcCCHH-HHHHHHHH----------------------------------------HHHc--cCCCCHHHHHHHHHHHH
Q 011226 239 YVEAGLFE-KAERALKE----------------------------------------LENR--NAHRDLSAYQFLITLYG 275 (490)
Q Consensus 239 ~~~~~~~~-~A~~~~~~----------------------------------------~~~~--~~~~~~~~~~~l~~~~~ 275 (490)
-....-++ .++..++. .... +..|. ..+..++..+.
T Consensus 272 ~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t 350 (652)
T KOG2376|consen 272 SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEAT 350 (652)
T ss_pred ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHH
Confidence 11110001 00000000 0000 11122 23333333322
Q ss_pred h--cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHH--------HHHhcCCCCChhhHHHHHHHHH
Q 011226 276 Q--TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK--------EWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 276 ~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~ 345 (490)
+ .....++.+++...-+..+.-...+....+......|+++.|.+++. .+.+.+.. +.+...+...+.
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~ 428 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYY 428 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHH
Confidence 2 22456677777766655544334456677788889999999999999 55554444 455667778888
Q ss_pred hcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 346 KEGRLENAEELKERARRR--GADPNAKTWEIFSD----YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
+.++.+.|..++.+.... .-.+.......++. .-.+.|+-++|..+++++.+.. .+|..+...++.+
T Consensus 429 ~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-------~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 429 KIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-------PNDTDLLVQLVTA 501 (652)
T ss_pred hccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-------CchHHHHHHHHHH
Confidence 989888888888887642 11223333333333 3357799999999999999975 2789999999999
Q ss_pred HHhcCChHHHHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~ 436 (490)
|++. +++.|..+-+.+
T Consensus 502 ~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 502 YARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhc-CHHHHHHHhhcC
Confidence 9876 577787765553
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=1.4e-07 Score=87.21 Aligned_cols=302 Identities=13% Similarity=0.023 Sum_probs=174.6
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCC-CC--CCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPE-TS--KNHL-TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL 167 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (490)
.|..+...+...|+.+.+.+.+..... .+ .+.. ........+...|++++|.+++++..+..+ .+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence 344444455555666665555554433 11 1211 122223345667888888888888877642 23333332 222
Q ss_pred HHh----cCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc
Q 011226 168 YAK----TGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA 242 (490)
Q Consensus 168 ~~~----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (490)
+.. .+..+.+.+.+.. .....|+ ......+..++...|++++|...+++..+. .+.+...+..+...+...
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHc
Confidence 333 3334444444433 1112233 234445566788899999999999999886 566677788888999999
Q ss_pred CCHHHHHHHHHHHHHccCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch-hH-H--HHHHHHHhcCCh
Q 011226 243 GLFEKAERALKELENRNAH-RDL--SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SY-L--NMIQVLVNLKDL 315 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~--~l~~~~~~~~~~ 315 (490)
|++++|...+++....... ++. ..|..+...+...|++++|..++++.....+.+... .. + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 9999999999887764321 222 345567788889999999999999875433211111 11 1 223333444544
Q ss_pred hhHHHH--H-HHHHhcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--C-H---HHHHHHH--HHHHhcC
Q 011226 316 PGAEKC--F-KEWESGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP--N-A---KTWEIFS--DYYLRNG 383 (490)
Q Consensus 316 ~~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~-~---~~~~~l~--~~~~~~g 383 (490)
+.+.+. + ........ ............++...|+.+.|..+++.+......+ . . .+-..++ .++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 433333 1 11111111 1111222356667788899999999999987632210 1 1 1111222 3456889
Q ss_pred CHHHHHHHHHHHHhcC
Q 011226 384 DMKLAVDCLEKAIDTG 399 (490)
Q Consensus 384 ~~~~A~~~~~~~~~~~ 399 (490)
+.++|.+.+...+...
T Consensus 322 ~~~~A~~~L~~al~~a 337 (355)
T cd05804 322 NYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998887664
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.1e-07 Score=79.28 Aligned_cols=299 Identities=10% Similarity=0.015 Sum_probs=212.9
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL 129 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 129 (490)
|.......+..++..+.+..++..|++++..-.+.. +.+......+..+|....++..|-..++++....|...-|..-
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 444555667788888888999999999998887776 2377778888899999999999999999998866766655432
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH--HHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 130 -LNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL--YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 130 -i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
...+-+.+.+..|+++...|... |+...-..-+.+ ....+++..+..++++....| +..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 45667789999999999888764 222222222222 235788899999998876543 555555666667899
Q ss_pred CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-------------CCH---------
Q 011226 207 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-------------RDL--------- 264 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~--------- 264 (490)
|+++.|.+-|+...+-++..|- ..|+ +.-+..+.|+++.|++...++.++|++ ||+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpl-lAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPL-LAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCch-hHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 9999999999999988745554 4555 445566789999999999999988764 121
Q ss_pred ------HHHHHHHHHHHhcCChhHHHHHHHHHHH-hCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 011226 265 ------SAYQFLITLYGQTGNLSEVYRIWRSLRL-AFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT 337 (490)
Q Consensus 265 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 337 (490)
..+|.-...+.+.|+++.|.+.+-.|.- .....|++|...+.-.- -.+++....+-+.-+....+- ...+|
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHH
Confidence 2233334456678888988888887742 12244667765443222 234555555556666666664 45788
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~ 359 (490)
..++-.||+..-++.|-.++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhh
Confidence 8888899999999999888765
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=3.5e-08 Score=87.75 Aligned_cols=226 Identities=12% Similarity=0.010 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhCCC-CC--CcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHH
Q 011226 137 LMTEKAEALLEKMKELNL-GF--SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAE 213 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 213 (490)
+..+.++.-+.+++.... .| ....|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566666666664321 11 13446666667777788888888777777753 224667777777888888888888
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 214 RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
..|+...+. .+.+..++..+...+...|++++|.+.|+...+.. |+..........+...++.++|...|......
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 888888775 45566677777777778888888888888777643 33221222222334566778888887654432
Q ss_pred CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc---CCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 294 FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG---CAT---YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
. .++... . .......|+...+ +.+..+.+. .+. .....|..+...+...|++++|...|++..+.++ |
T Consensus 195 ~-~~~~~~-~--~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 195 L-DKEQWG-W--NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred C-CccccH-H--HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2 222211 1 2222335555444 244443321 110 1235677888888888888888888888887532 3
Q ss_pred CHHHHH
Q 011226 368 NAKTWE 373 (490)
Q Consensus 368 ~~~~~~ 373 (490)
|..-+.
T Consensus 269 ~~~e~~ 274 (296)
T PRK11189 269 NFVEHR 274 (296)
T ss_pred hHHHHH
Confidence 444443
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=3.4e-07 Score=84.68 Aligned_cols=311 Identities=12% Similarity=-0.013 Sum_probs=193.8
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH---HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPF---NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 199 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 199 (490)
...|..+...+...|+.+.+.+.+....+... ++...+ ......+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-ARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 44666777777778888888777777665432 222222 222335667899999999999988763 223334332
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 200 MRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 200 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...+.. .+..+.+.+.+...... .+........+...+...|++++|...+++..+... .+...+..+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPE--NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 222222 45555565555552121 344455556777889999999999999999998653 45677888899999
Q ss_pred hcCChhHHHHHHHHHHHhCCC-CCc--hhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhH-H--HHHHHHHhcC
Q 011226 276 QTGNLSEVYRIWRSLRLAFPN-TAN--ISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVT-N--VMIGAYAKEG 348 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~ 348 (490)
..|++++|...+++.....+. ++. ..|..+...+...|++++|..+++......+ .+..... + .++..+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998775432 222 2345678889999999999999999864433 1112111 1 2233334445
Q ss_pred ChhHHHHH--HHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CCC-cCCHHHHHHHHHHHHh
Q 011226 349 RLENAEEL--KERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG-GKW-VPSSETIRTFMRHFEQ 422 (490)
Q Consensus 349 ~~~~a~~~--~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-~p~~~~~~~l~~~~~~ 422 (490)
....+..+ +.......... ..........++...|+.+.|..+++.+.......+ ... ............++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 44433333 21111111111 112223456677899999999999999877542100 000 0112223333445678
Q ss_pred cCChHHHHHHHHHHHHc
Q 011226 423 EKDVDGAEGFLEILKKA 439 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~ 439 (490)
.|+.++|.+.+...+..
T Consensus 320 ~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 320 EGNYATALELLGPVRDD 336 (355)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999888764
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=3e-06 Score=72.35 Aligned_cols=301 Identities=12% Similarity=-0.012 Sum_probs=185.0
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhH-HHHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTV-SDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLT-YGSLL 130 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~li 130 (490)
.+...-..+-+.+..+|++..|+.-|....+.+ |+. .++-.-...|...|+...|+.=++...+.+||-.. --.-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 334444556677888999999999999887665 332 23333456777889989998888888887777432 22233
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCcch----H------------HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh
Q 011226 131 NCYCKELMTEKAEALLEKMKELNLGFSSMP----F------------NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY 194 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 194 (490)
..+.++|.++.|..=|+..++.. |+..+ + ...+..+...|+...|+.....+.+.. +-|..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 56788999999999999998865 32211 1 122333445677777777777777642 33666
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH----HHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY----QFL 270 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~l 270 (490)
.+..-..+|...|++..|+.=++...+. ...+..++-.+-..+...|+.+.++..+++..+. .||.-.+ ..+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 6666667777777777777777666665 3445555555666677777777777777766653 3443211 111
Q ss_pred ---------HHHHHhcCChhHHHHHHHHHHHhCCCCCchh---HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH
Q 011226 271 ---------ITLYGQTGNLSEVYRIWRSLRLAFPNTANIS---YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 338 (490)
Q Consensus 271 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (490)
+......++|.++++..+...+..+....+. +..+-.++...+++.+|++...++.+..+. |+.++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHH
Confidence 1122344556666666665555444322222 233444555566666666666666654433 455555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 339 VMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5566666666666666666666653
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.2e-06 Score=91.88 Aligned_cols=341 Identities=11% Similarity=0.013 Sum_probs=216.5
Q ss_pred HHHhhCCHHHHHHHHhhcCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------CCc--chHHHHHHHH
Q 011226 99 LVAKVQGIDAAENYFVDLPE--TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLG------FSS--MPFNSLMTLY 168 (490)
Q Consensus 99 ~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~ 168 (490)
.+...|+++.+..+++.++. ...+..........+...|+++++..++......--. +.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456888888888887754 1122223334445556789999999999877543110 111 1112233445
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHH
Q 011226 169 AKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMKRDG----RVAADWTTFSNLASIYV 240 (490)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 240 (490)
...|++++|...+++..+.-...+. ...+.+...+...|+++.|...+++..... .......++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 234556667788999999999998887532 01112234566777888
Q ss_pred HcCCHHHHHHHHHHHHHc----cCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC--CC--CchhHHHHHHHH
Q 011226 241 EAGLFEKAERALKELENR----NAH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP--NT--ANISYLNMIQVL 309 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~~~ 309 (490)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+...... .+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 211 1 123345566677788999999999987754311 11 122344466677
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC-hhhH-----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYD-IRVT-----NVMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYL 380 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~ 380 (490)
...|+.+.|...+........... ...+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999888754211111 1111 11224455688999999998775542111111 11345666788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..|++++|...+++........ + ..++ ..+...+..++...|+.++|...+.++.+...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 9999999999999887652100 0 1122 34667777889999999999999999988655
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=7.4e-07 Score=75.96 Aligned_cols=194 Identities=13% Similarity=0.033 Sum_probs=108.5
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHH---HHHHhcCCCCcHHHHHHHHHHCCCCCCHhhH-HH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLM---TLYAKTGHPEKIPAIIQEMKASSIMPDSYTY-NV 198 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~ 198 (490)
+.-.--+-..+...|++..|+.-|....+. |+..|.++. ..|...|+..-|+.=+...++ ++||-..- ..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHH
Confidence 344455667777888888999888888874 344455443 467778888888888888877 46664221 12
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH----HHH------------HHHHHHHHcCCHHHHHHHHHHHHHccCCC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWT----TFS------------NLASIYVEAGLFEKAERALKELENRNAHR 262 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 262 (490)
-...+.+.|.++.|..=|+.+++.. |+.. .+. ..+..+...|+...|+..+..+.+-.+ .
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~---~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-W 187 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE---PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-W 187 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC---CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-c
Confidence 2346778889999999998888863 3221 111 112223334555555555555544222 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 263 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|...|..-..+|...|++..|+.=++...+..-. +..++..+-..+...|+.+.+....++..+
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 4444555555555555555555444444332211 222333344444455555555555555444
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.05 E-value=1.2e-05 Score=73.09 Aligned_cols=208 Identities=13% Similarity=0.069 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 245 FEKAERALKELENRNAHRDLSAYQFLITLYGQTG---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
.+++..+++.....-...+..+|..+.+.--..- ..+....+++++......--..+|..+++...+..-+..|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4556666666554333334444444433222222 2556666777666543322345788889988899999999999
Q ss_pred HHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011226 322 FKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR 400 (490)
Q Consensus 322 ~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 400 (490)
|.+..+.+..+ ++.+.++++..||. ++.+-|..+|+--.+. ...+..--...+.-+...++-..+..+|++.+..+.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998877666 77888888887775 7889999999987764 222334445677788899999999999999999863
Q ss_pred CCCCCCcCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCHHhHHHHHHHHHhcCC
Q 011226 401 GDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD---DLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 401 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 460 (490)
.|+ ..+|..++.--..-|+...+.++-+++...-+ .+....-..+++-|.-.+.
T Consensus 467 ------~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 467 ------SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred ------ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 244 68999999999999999999998888766433 1222233445555555555
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.2e-06 Score=79.30 Aligned_cols=394 Identities=11% Similarity=0.018 Sum_probs=244.2
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEK 141 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~ 141 (490)
...+..|+++.|+..|-+.+... +++...|..-..+|+..|++++|.+=-.+-....|+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567899999999999998887 458888888899999999999998887777776666 5689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcH---HHHHHHHHHC---CCCCCHhhHHHHHHHHHHc-------CC
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKI---PAIIQEMKAS---SIMPDSYTYNVWMRALAAV-------ND 208 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~-------~~ 208 (490)
|+.-|.+-++... -+...++.+..++.......+. -.++...... ........|..++...-+. .+
T Consensus 89 A~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 89 AILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999999888753 4556667777766221100000 0011111000 0000001122222111110 00
Q ss_pred hhHHHHHHHHHH--------HCC------CCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 209 ISGAERVIEEMK--------RDG------RVAA----------------------DWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 209 ~~~a~~~~~~~~--------~~~------~~~~----------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
.+...+..-.+. ..| ...| -..-...+.+...+..+++.|.+.+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111110000 000 0011 0112345667777777888888888
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH-------HHHHHHHHhcCChhhHHHHHHHH
Q 011226 253 KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY-------LNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
....... -+..-++....+|...|.+.++...-....+.|-. ...-| ..+..+|.+.++++.+...|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 8877654 45555666667777777777666655554444321 11122 22334566677788888888876
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 011226 326 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG 404 (490)
Q Consensus 326 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 404 (490)
....-.|+. ..+....+++....+...-. .|.. .-...-...+.+.|++..|+..|.++++..
T Consensus 325 Lte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~----- 388 (539)
T KOG0548|consen 325 LTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD----- 388 (539)
T ss_pred hhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----
Confidence 554333321 22333445555555544433 2332 112222556789999999999999999987
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
+-|...|....-+|.+.|.+..|++-.+..++++| +....|..=..++....++..++-..-+.....|+..-
T Consensus 389 --P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 389 --PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred --CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 14588899999999999999999999999999998 78888877777777777776666555444444454443
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=1.5e-08 Score=88.62 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=71.9
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL----RNG 383 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g 383 (490)
.+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. -..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCch
Confidence 344456666666555431 24455555566666666666666666666553 2232 2223333322 122
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
.+.+|..+|+++.+. +.+++.+.+.+..++...|++++|.+++++..+.++ .++.+...++-+....|+.
T Consensus 182 ~~~~A~y~f~El~~~-------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCCHHHHHHHHHHCC-------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCC
Confidence 466666666665554 225566666666666666666666666666666555 5555666666666666665
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=5.8e-09 Score=91.25 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh-hHHHHHH
Q 011226 279 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL-ENAEELK 357 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~ 357 (490)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+....++. ++.+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344455555544332 2233344444444444455555555554444443333 333444444444444444 3344444
Q ss_pred HHHHH
Q 011226 358 ERARR 362 (490)
Q Consensus 358 ~~~~~ 362 (490)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.2e-07 Score=86.22 Aligned_cols=247 Identities=14% Similarity=0.091 Sum_probs=190.1
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
.-+.+.|++.+|.-.|+..++. .|-+...|..|.......++-..|+..+.+..+..+ -+....-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 3457889999999999999997 788999999999999999999999999999988543 3577788888899999999
Q ss_pred hHHHHHHHHHHHhCCCC--------CchhHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCChhhHHHHHHHHHhcCChh
Q 011226 281 SEVYRIWRSLRLAFPNT--------ANISYLNMIQVLVNLKDLPGAEKCFKEWE-SGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
..|++.++.-+...++- +...-.. ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999876554210 0000000 11112222334455555554 4454578889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 430 (490)
.|.+.|+.++...+. |...||-|...++...+.++|+..|.++++.. |. +.+...|.-+|...|.+++|.
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHH
Confidence 999999999985332 56789999999999999999999999999986 77 567777888999999999999
Q ss_pred HHHHHHHHcCC---------CCCHHhHHHHHHHHHhcCCC
Q 011226 431 GFLEILKKAVD---------DLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 431 ~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~ 461 (490)
+.|=.++.... .++-.+|..|=.++.-.++.
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS 558 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence 98888776322 12346788777777766663
No 97
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=8.5e-06 Score=79.26 Aligned_cols=246 Identities=14% Similarity=0.127 Sum_probs=117.7
Q ss_pred HHHHHHHHHhcC--CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhhCCHHHHHHHHhh
Q 011226 40 RQQLNQFLKSKK--RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG--MNKTVSDQAIHLDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 40 ~~~l~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 115 (490)
.++++..+..+. .-++..+...++++...+-+.+-+++++++.-.+ +.-+....+.++-...+ -+.....+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHH
Confidence 334455544443 3567788888999999999999999999985432 11222233333333222 344555566666
Q ss_pred cCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh
Q 011226 116 LPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY 194 (490)
Q Consensus 116 ~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 194 (490)
+.. ..|+ +.......+-+++|..+|+..- .+....+.|+.- -+..+.|.++-++.. .+.
T Consensus 1046 LdnyDa~~------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~ 1105 (1666)
T KOG0985|consen 1046 LDNYDAPD------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPA 1105 (1666)
T ss_pred hccCCchh------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChH
Confidence 555 2222 2223334455566666655432 123333333332 233344444333221 233
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.|..+..+-.+.|.+.+|++.|-+. .|+..|..++....+.|.|++-.+++....+....|.. =+.||-+|
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence 4555555555555555544443221 23334445555555555555555555444443333332 22344455
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (490)
++.++..+..+++ ..|+......+.+-|...|.++.|.-+|
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 5555444433322 1234444444444444444444444444
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.9e-07 Score=84.99 Aligned_cols=256 Identities=14% Similarity=0.086 Sum_probs=194.5
Q ss_pred HHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011226 167 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 246 (490)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (490)
-+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+. .+.+..+...|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHH
Confidence 3567899999999999988875 236778888888999999999999999999997 7888899999999999999999
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHHHHh-CCCCCchhHHHHHHHHHhcCC
Q 011226 247 KAERALKELENRNAHRDLSAYQFLI-----------TLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 314 (490)
.|++.++......++ |..+. .............++|-++... +..+|......|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999988664321 11110 1111222234455566555444 434677788888888999999
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA-KTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
+++|.+.|+......+. |..+||.|...++...+.++|+.-|.+.++. +|+- .+...|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999998777 8999999999999999999999999999984 5654 355566778999999999999988
Q ss_pred HHHhcCCC---CCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 394 KAIDTGRG---DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 394 ~~~~~~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
.++..... +.....++..+|..|=.++.-.++.+.+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 77655311 11112234567877777777777777555443
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=7.4e-06 Score=85.89 Aligned_cols=330 Identities=15% Similarity=0.030 Sum_probs=205.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--C----CCCH--hhHHHHHHHH
Q 011226 132 CYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--I----MPDS--YTYNVWMRAL 203 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~p~~--~~~~~l~~~~ 203 (490)
.....|+++.+..+++.+.......+..........+...|+++++..++....+.- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567777777777665321111223333444555667899999999998775431 0 1111 1222233456
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC---C--CHHHHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELENRNAH---R--DLSAYQFLITLY 274 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~ 274 (490)
...|+++.|...+++....- ...+. ...+.+...+...|++++|...+++....... + ...++..+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 78999999999999987631 11121 23456677788899999999999887642111 1 123455567778
Q ss_pred HhcCChhHHHHHHHHHHHh----CCC--C-CchhHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCCChhhHHHHHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLA----FPN--T-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG----CATYDIRVTNVMIGA 343 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~ 343 (490)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8999999999998876542 211 1 1223445556677789999999998886542 211123344556677
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARRRGAD-PNAKTW-----EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
+...|+.+.|...+......... .....+ ...+..+...|+.+.|..++......... . .......+..+.
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~--~-~~~~~~~~~~~a 698 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA--N-NHFLQGQWRNIA 698 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc--c-chhHHHHHHHHH
Confidence 88899999999999888642111 111111 11223445688999999998775543210 0 000112245677
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCC-CCHHhHHHHHHHHHhcCCCcHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKKA----VDD-LGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.++...|++++|...++++... +.. ....+...+..++...|+..++.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~ 751 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ 751 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888999999999999998764 221 12456778888899999955543
No 100
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=4.5e-06 Score=74.30 Aligned_cols=224 Identities=9% Similarity=0.025 Sum_probs=108.4
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh--h
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL--S 281 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 281 (490)
..+..++|+.+..++++. .+-+..+|+....++...| ++++++..++++..... .+..+|+.....+.+.|+. +
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 344455555555555554 3444444444444444444 34555555555554333 2333344333333333332 3
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc---CCh----hHHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE---GRL----ENAE 354 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~----~~a~ 354 (490)
+++.+++.+.+..++ +...|+.....+...|+++++.+.++.+.+.++. |..+|+.....+.+. |.. ++..
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 445555555544432 3445555555555555555555555555555444 444444444333332 111 3455
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC------
Q 011226 355 ELKERARRRGADPNAKTWEIFSDYYLRN----GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK------ 424 (490)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------ 424 (490)
.....++...+. |...|+.+...+... ++..+|.+.+.+..+.++ .+...+..|++.|+...
T Consensus 204 ~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-------~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 204 KYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-------NHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred HHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-------CcHHHHHHHHHHHHhhhccchhh
Confidence 555555554322 445565555555442 233456666666555441 34555666666665422
Q ss_pred ------------ChHHHHHHHHHHHHcCC
Q 011226 425 ------------DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 425 ------------~~~~a~~~~~~~~~~~~ 441 (490)
..++|.++++.+.+.+|
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 23566677776644444
No 101
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.93 E-value=3.8e-05 Score=69.91 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
.+....++.++......--..+|..++..-.+...++.|+.+|.++.+.+..+ +...+.+++.-++. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55556666666543322233577888898899999999999999999987776 66677777776654 78899999999
Q ss_pred HHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCC
Q 011226 394 KAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD--DLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 394 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 460 (490)
--++.. ..++......+.-+...|+-..+..+|++.+..+. .....+|..++..-..-|+
T Consensus 426 LGLkkf-------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 426 LGLKKF-------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHhc-------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 988774 24455567788888999999999999999998844 2356899999999999999
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=2.5e-06 Score=85.62 Aligned_cols=250 Identities=14% Similarity=0.161 Sum_probs=185.4
Q ss_pred CCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHcCCHHHH
Q 011226 174 PEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 174 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A 248 (490)
.+.|.++-...... +-....|-..|......++.++|.++.+++... +.+ -...|.++++.-..-|.-+..
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 34455544444432 223456777888888999999999999998876 422 234577777777777888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
.++|+++.+-. -....|..|...|.+.+..++|.++++.|.+..- -....|...+..+.+.++.+.|..++.+..+.
T Consensus 1517 ~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1517 KKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 89999988731 2345678888999999999999999999987744 35678888899999999999999999987765
Q ss_pred CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCc
Q 011226 329 CAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 407 (490)
Q Consensus 329 ~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 407 (490)
-++ -........+..-.+.|+.+.+..+|+..+...++ ....|+.+++.-.++|+.+.+..+|++....+. .
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l------~ 1666 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL------S 1666 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC------C
Confidence 443 13455566677778899999999999998876433 567899999999999999999999999999983 3
Q ss_pred CC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 408 PS--SETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 408 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
|- -..|...+..-.+.|+-+.++.+=.++.
T Consensus 1667 ~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred hhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 43 4566777766667777766665554444
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=2.7e-06 Score=71.16 Aligned_cols=292 Identities=12% Similarity=0.077 Sum_probs=201.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHH-HHHHHH
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETSK-NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNS-LMTLYA 169 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 169 (490)
-+...+..+.+..+++.|++++..-.+..| +......|..+|-...++..|-..++++.... |...-|.. -...+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 356677777888999999999988777434 77788889999999999999999999998764 55444432 344566
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHH--HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR--ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
+.+.+..|+++...|... |+...-..-+. .....+|+..+..+.++....+ +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 788899999999888653 22221111122 3356788889998888876433 44555566667788999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-------------Cch--------hHHHHH
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-------------ANI--------SYLNMI 306 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~l~ 306 (490)
|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...++++.|++- |.. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999887743333456777654 5678899999999999988776522 111 112233
Q ss_pred HH-------HHhcCChhhHHHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011226 307 QV-------LVNLKDLPGAEKCFKEWES-GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 378 (490)
Q Consensus 307 ~~-------~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (490)
.+ +.+.|+++.|.+.+..|-- .....|+.+...+.-. -..+++.+..+-+.-+...++- ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 33 4567888888888877742 2233456665544322 2235566666666666665443 45788888889
Q ss_pred HHhcCCHHHHHHHHHHH
Q 011226 379 YLRNGDMKLAVDCLEKA 395 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~ 395 (490)
|+++.-++.|-+++.+-
T Consensus 320 yCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhhhHHHhHHHHHHhhC
Confidence 99998888888887654
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.87 E-value=2.8e-06 Score=85.22 Aligned_cols=226 Identities=14% Similarity=0.140 Sum_probs=175.9
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMP---DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTT 231 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (490)
-+...|-..|....+.++.++|.++.+++... ++.- -...|.++++.-..-|.-+...++|+++.+. -.....
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V 1532 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTV 1532 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHH
Confidence 45677888888888999999999999988764 2211 1245777777777788888999999999885 334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLV 310 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 310 (490)
|..|...|.+.+.+++|-++++.|.+. +......|...+..+.+..+-+.|..++.+..+.-++. ........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 889999999999999999999999885 33567789999999999999999999999887764432 1223345556667
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK--TWEIFSDYYLRNGDMK 386 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~ 386 (490)
+.|+.+.++.+|+......++ -...|+..|+.-.++|+.+.++.+|++....++.|-.. .|...+..--..|+-.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 899999999999999887766 67899999999999999999999999999987776542 3444454444555543
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=1.3e-05 Score=76.50 Aligned_cols=327 Identities=16% Similarity=0.125 Sum_probs=181.3
Q ss_pred HHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-----------CCCCHhHHHHHHHH
Q 011226 64 KLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-----------TSKNHLTYGSLLNC 132 (490)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~~~li~~ 132 (490)
.|.--|+.+.|.+-.+.+. +...|..+...|.+..+++-|.-.+-.|.. ..++ ..=....-.
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL 809 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL 809 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence 4555677777777666553 334567777777777777776666655543 1121 222222333
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
....|.+++|+.+|++... |..|=..|...|.|++|.++-+.=-+..+ ..||.....-+-..+|.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence 4566888888888887766 44455566677888888887653322222 24555555666667777777
Q ss_pred HHHHHHHHHCC--------CCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 213 ERVIEEMKRDG--------RVA----------ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 213 ~~~~~~~~~~~--------~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
++.|++..... ..+ .|...|.-....+-..|+.|.|+.+|....+ |..+++..
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 77666531110 012 2333444455555567777777777766543 55566666
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcC
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC------ATYDIRVTNVMIGAYAKEG 348 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~ 348 (490)
|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+..... .+.+ .-..|...+...|
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd--~~d~L~nlal~s~ 1020 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND--MKDRLANLALMSG 1020 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHhhcC
Confidence 7777777777765542 244455567788888888888888877653210 0000 0011111122112
Q ss_pred --ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhcCCCCCCCCcCCHHHHHHHHH
Q 011226 349 --RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK--------AIDTGRGDGGKWVPSSETIRTFMR 418 (490)
Q Consensus 349 --~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--------~~~~~~~~~~~~~p~~~~~~~l~~ 418 (490)
+.-.|-.+|++. |.. +...+..|-+.|.+.+|+++.-+ ++..... ...|+...+--.+
T Consensus 1021 ~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd----~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1021 GSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD----AGSDPKLLRRCAD 1088 (1416)
T ss_pred chhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC----CCCCHHHHHHHHH
Confidence 222333333331 111 11223446667777666654221 1112211 1256777777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 011226 419 HFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 419 ~~~~~g~~~~a~~~~~~~~~ 438 (490)
.++...++++|..++-..++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 78888888888887765543
No 106
>PLN02789 farnesyltranstransferase
Probab=98.85 E-value=6.6e-06 Score=73.25 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=158.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
-..+...+..++|+.+..++.+..+ -+..+|+.--.++...| ++++++..++++...+++ +..+|+.-...+.+.|+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 3334445778899999999887543 24456666666666777 679999999999987765 34456555555556665
Q ss_pred h--hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----H
Q 011226 315 L--PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN---GD----M 385 (490)
Q Consensus 315 ~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~ 385 (490)
. +.+..+++.+.+..++ |..+|+...-.+...|+++++++.++++++.++. |...|+.....+.+. |. .
T Consensus 122 ~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 3 6778889899888776 8899999888999999999999999999998765 666777666555444 22 2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE----KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
++++++..+++.... -|...|+.+...+... +...+|.+++.+....++ .+..+...|+..|+...
T Consensus 200 e~el~y~~~aI~~~P-------~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 200 DSELKYTIDAILANP-------RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHHHHHHHHHHhCC-------CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhh
Confidence 467888888888761 3477788888777763 445679999999888887 88999999999998743
No 107
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=4.6e-06 Score=78.41 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
..|...+..-+...|+.+.|...|-+
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHh
Confidence 34555666667777777777766543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.82 E-value=8.5e-06 Score=76.67 Aligned_cols=220 Identities=15% Similarity=0.088 Sum_probs=145.9
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 011226 88 KTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL 167 (490)
Q Consensus 88 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (490)
|-...-..+...+...|-...|..+|+++. .|..+|.+|...|+..+|..+..+..+.. ||...|..+.+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek~--~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEKD--PDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcCC--CcchhHHHhhhh
Confidence 333444556667777777777777777653 56777777777777777777777766632 677777777776
Q ss_pred HHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 168 YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. .+....+|-.+..+..+.++++.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHH
Confidence 65555566777766644321 1112222333467777777777777776 56667777777777777778887
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 248 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 248 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
|.+.|..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+. -+...|...+....+.|.+++|.+.+.++..
T Consensus 538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 777777766532 12456777787788888887888877777776652 3444555556666777778877777777643
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=3e-06 Score=73.15 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
+...+.+.|++++|+..+++..+.... .| ....+..+..++.+.|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPD-----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCC-----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344566667777777777776666410 01 2456666666777777777777766665543
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=2.4e-06 Score=80.27 Aligned_cols=216 Identities=15% Similarity=0.140 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 162 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 162 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..+ .+|++..|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 566777888899999999998654 466788899999999999999988887 47899999999998888
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
..-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.++ ....+|..+..+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 88889999998875432 222233334457899999999998766544 2456788888888899999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.+..
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9998887665 78899999999999999999999999999976 3466677788888889999999999999988774
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=9e-06 Score=76.49 Aligned_cols=221 Identities=17% Similarity=0.235 Sum_probs=142.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
.+.....+|.+|+.+++.+.... ....-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|+|
T Consensus 740 eaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 34455567777777777766642 333446677778888888888888775531 345567778888888
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
+.|.++-.+. .|+......|.+-..-+-+.|++.+|.++|-.+. .|+ ..|..|-+.|..++.+.+.++-
T Consensus 808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 8887776554 2344445556666666677788888877765442 233 3567788888888877776653
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 361 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 361 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
.-. .-..|...+..-|-..|+...|...|-+.. -|.+....|..++-|++|.++-+ ..|
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------------d~kaavnmyk~s~lw~dayriak---teg 935 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------------DFKAAVNMYKASELWEDAYRIAK---TEG 935 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------------hHHHHHHHhhhhhhHHHHHHHHh---ccc
Confidence 211 122455566777888888888887765432 35566777888888888866644 344
Q ss_pred CCCCHHhHHHHHHHHHhcCCCcHHHH
Q 011226 441 DDLGVEVFEPLIRTYAAAGRTSPVML 466 (490)
Q Consensus 441 ~~~~~~~~~~l~~~~~~~g~~~~~~~ 466 (490)
- .|..-...++.+-.-.|+-+-.++
T Consensus 936 g-~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 936 G-ANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred c-ccHHHHHHHHHHHhhCcHHHHHHH
Confidence 4 666666666666666666544444
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=1e-05 Score=80.43 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (490)
.+..+..+|-+.|+.++|..+|+++.+..+. +....+.+...|... ++++|.+++...... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 4445555555555555555555555554422 444445555555555 555555555443322 33
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
..+++..+.++|.++.... |+.. +.-..+.+.+... | +.--..++..+-..|...+
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~~i~~ki~~~~~------~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SDDF---------------DFFLRIERKVLGHRE------FTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cccc---------------hHHHHHHHHHHhhhc------cchhHHHHHHHHHHHhhhh
Confidence 4445555555555555531 1211 1111222222222 1 1123445556667788888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCC
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVS 477 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~ 477 (490)
+++++..+++.+++..+ .|..+..-++.+|...=..-.-+-+.++..|+.-+
T Consensus 238 ~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 238 DWDEVIYILKKILEHDN-KNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNN 289 (906)
T ss_pred hhhHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHccCcchHHHHHHHhccccC
Confidence 99999999999999999 78888999999997332222233444455555444
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=7.1e-05 Score=73.19 Aligned_cols=338 Identities=10% Similarity=0.071 Sum_probs=200.3
Q ss_pred CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 70 LYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKM 149 (490)
Q Consensus 70 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 149 (490)
+..+..+..+++-..+ -|+ +...+...+-+++|..+|+...- +....+.||.- -++++.|.+.-++.
T Consensus 1035 d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie~---i~~ldRA~efAe~~ 1101 (1666)
T KOG0985|consen 1035 DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDM---NVSAIQVLIEN---IGSLDRAYEFAERC 1101 (1666)
T ss_pred ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHHH---hhhHHHHHHHHHhh
Confidence 4445555555554443 132 34556667778888888887653 55555555542 36777887777665
Q ss_pred HhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH
Q 011226 150 KELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW 229 (490)
Q Consensus 150 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (490)
.+ +..|..+..+-.+.|...+|.+-|-+. -|+..|..+++.+.+.|.+++-.+++....+.. -.|..
T Consensus 1102 n~------p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~i 1168 (1666)
T KOG0985|consen 1102 NE------PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYI 1168 (1666)
T ss_pred CC------hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccc
Confidence 44 356888888888888888887766432 266778888888888888888888888887766 56666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
.+ .|+-+|++.++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+ .-|..|...+
T Consensus 1169 d~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TL 1230 (1666)
T KOG0985|consen 1169 DS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTL 1230 (1666)
T ss_pred hH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHH
Confidence 55 78888888888777655542 366666667777777777777776666543 2355566666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
...|++..|.+.-++. .+..+|..+-.+|...+.+.-| +|--.++.....-..-++.-|-..|-+++.+
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 6666666666544432 1445666666666555444332 1222222233344555666666666666666
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCC------CCCHHhHHHHHHHHHhcCCCc
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVD------DLGVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~------~~~~~~~~~l~~~~~~~g~~~ 462 (490)
.+++..+-.. +...-.|+-|.-.|.+- ++++..+.++-... .++ -.....|+-|+-.|.+-..+.
T Consensus 1300 sl~Ea~LGLE-------RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyD 1371 (1666)
T KOG0985|consen 1300 SLLEAGLGLE-------RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYD 1371 (1666)
T ss_pred HHHHhhhchh-------HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 6666554332 12333455554444443 23433333332221 111 012445666666665555555
Q ss_pred HHHHHHHh
Q 011226 463 PVMLRRLK 470 (490)
Q Consensus 463 ~~~~~~m~ 470 (490)
-+....|.
T Consensus 1372 NAa~tmm~ 1379 (1666)
T KOG0985|consen 1372 NAALTMME 1379 (1666)
T ss_pred HHHHHHHh
Confidence 55544443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=2.9e-06 Score=70.19 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=92.4
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY-LRNGD--MKLA 388 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 388 (490)
.++.+++...++......+. |...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55666777777777766665 7778888888888888888888888888875432 556666666653 56666 4888
Q ss_pred HHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 389 VDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
.+++++.++.. | +...+..+...+.+.|++++|...|+++++..+ |+..-+
T Consensus 130 ~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~-~~~~r~ 181 (198)
T PRK10370 130 REMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS-PRVNRT 181 (198)
T ss_pred HHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCccHH
Confidence 88888888876 4 467777777888888888888888888888877 554333
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=2.2e-06 Score=74.02 Aligned_cols=185 Identities=10% Similarity=0.019 Sum_probs=95.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH--hh
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSS----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS--YT 195 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~ 195 (490)
....+..+...+...|+++.|...|+++.... |+. .++..+..++...|++++|...++++.+....... .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34445555555556666666666666655533 221 23445555556666666666666666553211000 12
Q ss_pred HHHHHHHHHHc--------CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 196 YNVWMRALAAV--------NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 196 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+..+..++... |+.+.|.+.|+.+.+. .+.+...+..+..... ... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 33333333332 5677777777777765 3333333222211100 000 000 011
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCC-C-CchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPN-T-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
..+...|.+.|++.+|...++...+..+. | ....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23445567777777777777777665432 1 2345666777777777777777777766554
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=9.3e-06 Score=79.81 Aligned_cols=132 Identities=16% Similarity=0.241 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
...+..|.....+.|..++|..+++...+..+. +......+...+.+.+++++|...++......+. +......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 444444444444444444544444444442221 1222333444444444444444444444444433 44444444444
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 344 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+...|++++|..+|+++...+. -+...+..+..++...|+.++|...|++..+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444444444444444211 12334444444444444444444444444444
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=1.8e-06 Score=67.55 Aligned_cols=125 Identities=10% Similarity=-0.110 Sum_probs=92.6
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 320 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+++...+.. +..+..+...+...|++++|...|+......+ .+...|..+..++...|++++|+..|++.....
T Consensus 14 ~~~~~al~~~----p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD----PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445544432 22344567777888888888888888887543 266777788888888888888888888888876
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
. .+...+..+..++...|++++|...|+..++..| .++..|.....+...
T Consensus 89 p-------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p-~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 A-------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY-ADASWSEIRQNAQIM 138 (144)
T ss_pred C-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 1 4577888888888888888888888888888887 777777666655543
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=1e-05 Score=80.33 Aligned_cols=218 Identities=13% Similarity=0.069 Sum_probs=125.0
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 011226 90 VSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHL-TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLY 168 (490)
Q Consensus 90 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 168 (490)
...+..|+..+...+++++|.++.+...+..|+.. .|-.+...+...++.+.+.-+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 34555666666666666666666665555444432 333333344455554444333 21 2222
Q ss_pred HhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 169 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
....++.-+..++..|...+ -+...+-.+..+|-+.|+.++|..+++++.+. .+-++.+.|.+...|... ++++|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHH
Confidence 22233333333333443322 23456677888888999999999999999987 678888889999999888 99999
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-------------------CCchhHHHHHHHH
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-------------------TANISYLNMIQVL 309 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~~~~~~~~l~~~~ 309 (490)
.+++.+.... +...+++.++.++|.++....+. --..++..+-..|
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY 233 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 9888887653 44455666666666666543321 1112223333444
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (490)
-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 4555555555555555555444 4444444444444
No 119
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=2.1e-05 Score=75.10 Aligned_cols=213 Identities=16% Similarity=0.138 Sum_probs=145.1
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHh-CCC--------CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEK-RGM--------NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN 122 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 122 (490)
..+...|..+.+.+.+.++++-|.-.+-.|.. +|. .|+ .+-..+.......|.+++|+.+|++...
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---- 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---- 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 35667788899999999888888777666632 111 122 2333444455678999999999988765
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHH----------HHCC----
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM----------KASS---- 188 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~---- 188 (490)
|..|=..|-..|.|++|+++-+.--... =..||......+-..++.+.|++.|++. ....
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 4445566777899999999877533222 2345655566666667777777766532 1111
Q ss_pred -----CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC
Q 011226 189 -----IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 263 (490)
Q Consensus 189 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 263 (490)
-.-|...|.-...-.-..|+.+.|+.+|...... ..+++..|-.|+.++|-++-++- -|
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----------fs~VrI~C~qGk~~kAa~iA~es------gd 966 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY----------FSMVRIKCIQGKTDKAARIAEES------GD 966 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh----------hhheeeEeeccCchHHHHHHHhc------cc
Confidence 1224445555666666788899999888877553 35777778889999998887663 35
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
......+.+.|-..|++.+|..+|.+.+
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6677788889999999999998887664
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=5.4e-05 Score=73.90 Aligned_cols=375 Identities=12% Similarity=-0.004 Sum_probs=224.0
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 69 KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
++...|+..|-...+.... -...|..+...|....+...|.+.|+...+ ...+...+......|++..+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3356666666666555422 234688888888888888999999999888 44456788889999999999999998843
Q ss_pred HHHhCCCCCCc--chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 011226 148 KMKELNLGFSS--MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 225 (490)
Q Consensus 148 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 225 (490)
..-+... .-. ..|...--.|.+.++...|..-|+...+..++ |...|..+..+|..+|.+..|.++|.++... .
T Consensus 551 ~~~qka~-a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 551 RAAQKAP-AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHhhhch-HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 3333211 111 22223333466778888888888888776433 6678888999999999999999999888775 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-------H
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKELENRN------AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR-------L 292 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~ 292 (490)
|.+...--...-.-+..|.+.+|+..+..+...- ..--..++-.+...+.-.|-..++.++++.-+ .
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 4444443444555667888888888887765421 11112223222222333333333333333221 1
Q ss_pred hCCCCCchhHHHHHHH-----------------------HHhcCCh---h---hHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 293 AFPNTANISYLNMIQV-----------------------LVNLKDL---P---GAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 293 ~~~~~~~~~~~~l~~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
.....+...|..+-++ ....+.. + -+.+.+-.-.+ ...+...|..|+..
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 1111111112111111 1111111 1 01111111111 11123344444443
Q ss_pred HHh----cC----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 011226 344 YAK----EG----RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 415 (490)
Q Consensus 344 ~~~----~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~ 415 (490)
|.+ .+ +...|...+...++.. .-+..+|+.+--. ...|++.-|.-.|-+..... +.+..+|..
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-------p~~~~~W~N 855 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-------PTCHCQWLN 855 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-------ccchhheec
Confidence 333 12 2235677777776642 2356667665544 66677777777776666654 245778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 416 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 416 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+...+.+..+++.|...|.......| .|...|-.........|+
T Consensus 856 lgvL~l~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHH
Confidence 88889999999999999999999999 888888777666666676
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=3.1e-08 Score=54.97 Aligned_cols=32 Identities=25% Similarity=0.407 Sum_probs=15.5
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.7e-05 Score=65.01 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=149.0
Q ss_pred cCCHHHHHHHHHHHHH---cc-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChh
Q 011226 242 AGLFEKAERALKELEN---RN-AHRDLS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 316 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (490)
..+.++..+++.++.. +| ..++.. .|..++-+....|+.+.|...++.+....+. +..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 4678899999888754 34 445543 3555666778889999999999999887643 2222222233345679999
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
+|.++++.+.+.++. |..++-.-+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999988765 7778877777777888888999988888876 56699999999999999999999999999999
Q ss_pred hcCCCCCCCCcCC-HHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 011226 397 DTGRGDGGKWVPS-SETIRTFMRHFEQEK---DVDGAEGFLEILKKAVDDLGVEVFEPL 451 (490)
Q Consensus 397 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l 451 (490)
-.. |- +..+..+.+.+.-.| +.+.|.+.|++.++..+ .+...+..+
T Consensus 182 l~~--------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~-~~~ral~GI 231 (289)
T KOG3060|consen 182 LIQ--------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP-KNLRALFGI 231 (289)
T ss_pred HcC--------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh-HhHHHHHHH
Confidence 876 54 555666666655444 57788899999998776 454444333
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=4.9e-06 Score=68.87 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH-HhcCC--hhHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY-AKEGR--LENA 353 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a 353 (490)
.++.+++...++...+..+. +...|..+...|...|+++.|...|+...+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34445555555555544432 4445555556666666666666666665555444 555555555542 44444 3566
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++++..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666654332 44555555555666666666666666666554
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=3.7e-08 Score=54.66 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=14.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 259 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL 290 (490)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (490)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=5e-05 Score=62.88 Aligned_cols=240 Identities=14% Similarity=0.119 Sum_probs=132.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChh
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 281 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (490)
-+.-.|.+..++..-...... +.+...-..+-++|...|.+..... ++.... .|.......+.......++.+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 334455555555444433322 1233333344555555555443322 222211 233344444443333344433
Q ss_pred HHH-HHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 282 EVY-RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 282 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
.-+ ++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 233334333333332333333455677777777777666521 2223333334456667777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 361 RRRGADPNAKTWEIFSDYYL----RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 361 ~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
.+- .+..+.+-|..++. -.+.+.+|.-+|+++-+.. .|+..+.+....++...|++++|..+++.+
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-------~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-------PPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-------CCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 763 25556665655553 2345777777888777752 377777777777777788888888888888
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 437 KKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
+...+ .++.+...++-+-...|+.++..
T Consensus 234 L~kd~-~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 234 LDKDA-KDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HhccC-CCHHHHHHHHHHHHHhCCChHHH
Confidence 87777 67777777777777777764443
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=9.4e-06 Score=67.05 Aligned_cols=156 Identities=21% Similarity=0.178 Sum_probs=86.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+-..+...|+-+....+....... .+.+......++....+.|++..|...|.+..... ++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 444555555555555555554432 34444454455555666666666666666655532 245566666666666666
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011226 279 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKE 358 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 358 (490)
+.++|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666655554332 3344555555555566666666666665554433 44455555555566666666665554
Q ss_pred H
Q 011226 359 R 359 (490)
Q Consensus 359 ~ 359 (490)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=1.2e-05 Score=66.36 Aligned_cols=158 Identities=16% Similarity=0.021 Sum_probs=106.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 94 AIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 94 ~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
..+-..+.-.|+-+....+...... .+.|....+..+....+.|++..|...|++...... +|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHcc
Confidence 4444555556666666666665444 444555566677777777777777777777776543 67777777777777777
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
++++|..-|.+..+... -++...+.+.-.+.-.|+.+.|..++...... -.-+..+-..+.......|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777766422 24455666777777777777777777777765 3446666667777777777777777766
Q ss_pred HHH
Q 011226 253 KEL 255 (490)
Q Consensus 253 ~~~ 255 (490)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 553
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.00017 Score=59.43 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=140.6
Q ss_pred HcCChhHHHHHHHHHHHCC---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 205 AVNDISGAERVIEEMKRDG---RVAAD-WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
...+.++..+++.++.... ...++ +..|..+.-+....|+.+.|...++.+.+.- +-+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 3457889999988887642 12233 3456677778888999999999999988754 22333322223335567999
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
++|.++++.+.+.++ .|..++..=+...-..|+.-+|++-+....+.-+. |...|..+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998774 36667766666666778888898888888776554 9999999999999999999999999999
Q ss_pred HHcCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC
Q 011226 361 RRRGADP-NAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTG 399 (490)
Q Consensus 361 ~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 399 (490)
.-. .| ++..+..+...+.-.| +..-|.++|.+.++..
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 874 34 4445556666554444 5667899999999886
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.56 E-value=7.3e-05 Score=67.46 Aligned_cols=116 Identities=17% Similarity=0.150 Sum_probs=56.7
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
..|++++|+..++.+.+. .+-|+.........+...|+..+|.+.++.+... .|........+..+|.+.|++.+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 445555555555555443 1123333333444555555555555555555553 2333444444555555555555555
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011226 250 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (490)
.+++...... +-|+..|..|.++|...|+..++.....+
T Consensus 395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 5555544432 23445555555555555555555444433
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=4e-06 Score=65.54 Aligned_cols=117 Identities=15% Similarity=-0.048 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
..++++..+. .|+ .+......+...|++++|...|+..+.... .+...|..+..++...|++++|...|
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-------WSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556666653 344 355667788999999999999999998861 46889999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHH
Q 011226 434 EILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKK 482 (490)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~ 482 (490)
+++...+| .+..++..+..++...|+..+++...-+...+.|+.....
T Consensus 82 ~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 82 GHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999 9999999999999999998888877777777888765543
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=1.4e-05 Score=78.50 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=125.2
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 69 KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
....+++.-+...... +..+...+..|..+..+.|.+++|..+++.+.+..|+ ......+...+.+.+++++|+..++
T Consensus 66 ~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 66 HKPAAALPELLDYVRR-YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred cchHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3334444333333333 3456888888999999999999999999999995555 5577888899999999999999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 011226 148 KMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA 227 (490)
Q Consensus 148 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 227 (490)
+.....+ -+......+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|+...+. ..+
T Consensus 145 ~~l~~~p-~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~ 220 (694)
T PRK15179 145 LYFSGGS-SSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGD 220 (694)
T ss_pred HHhhcCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCc
Confidence 9998763 345556677778888999999999999998743 234778888889999999999999999999886 556
Q ss_pred CHHHHHHHH
Q 011226 228 DWTTFSNLA 236 (490)
Q Consensus 228 ~~~~~~~l~ 236 (490)
....|+.++
T Consensus 221 ~~~~~~~~~ 229 (694)
T PRK15179 221 GARKLTRRL 229 (694)
T ss_pred chHHHHHHH
Confidence 666655443
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3.5e-05 Score=63.75 Aligned_cols=242 Identities=14% Similarity=0.076 Sum_probs=138.6
Q ss_pred cHHHHHHHHHHhcCC-CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHH-Hhh
Q 011226 38 SVRQQLNQFLKSKKR-VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENY-FVD 115 (490)
Q Consensus 38 ~~~~~l~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~ 115 (490)
.+...++...+.... -.......+.++|...|.+...+.- +.... .|.......+...+..-++.+.-+.- .+.
T Consensus 23 nyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~ 98 (299)
T KOG3081|consen 23 NYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYEL 98 (299)
T ss_pred HHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHH
Confidence 344445444433322 3344445556677767766544332 22222 33333344444444434444433332 333
Q ss_pred cCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH
Q 011226 116 LPE--TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS 193 (490)
Q Consensus 116 ~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 193 (490)
+.. ..-+......-...|++.|++++|++..+... +......=+..+.+..+++-|.+.+++|.+.. +.
T Consensus 99 ~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 99 VADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 332 11122223333456778888888888776622 22333333344556677788888888887743 56
Q ss_pred hhHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 011226 194 YTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF 269 (490)
Q Consensus 194 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (490)
.|.+.|..++.+ .+++..|.-+|+++-+. .+|++.+.+-.+.++...|++++|..+++....+.. .+..+...
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHH
Confidence 667666666544 34677888888888775 788888888888888888888888888888877654 34555555
Q ss_pred HHHHHHhcCChhH-HHHHHHHHHHhCC
Q 011226 270 LITLYGQTGNLSE-VYRIWRSLRLAFP 295 (490)
Q Consensus 270 l~~~~~~~~~~~~-a~~~~~~~~~~~~ 295 (490)
++.+-...|...+ ..+.+.++....+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 5555555555433 4455666665443
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.53 E-value=0.0012 Score=64.23 Aligned_cols=420 Identities=11% Similarity=0.055 Sum_probs=233.8
Q ss_pred HHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHH
Q 011226 47 LKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTY 126 (490)
Q Consensus 47 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 126 (490)
.++++.+.+..+..+ .+.+.|+.++|..+++.....+.. |..|...+-.+|.+.|..++|..+|+......|+....
T Consensus 37 kk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell 113 (932)
T KOG2053|consen 37 KKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELL 113 (932)
T ss_pred HHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHH
Confidence 334444444444433 346789999999888887655533 77788888888999999999999999999877887778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC-CCC---------cHHHHHHHHHHCC-CCCCHhh
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG-HPE---------KIPAIIQEMKASS-IMPDSYT 195 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~---------~a~~~~~~~~~~~-~~p~~~~ 195 (490)
..+..+|++.+++.+-.+.--++-+. .+.+...|=++++.+.+.. ..+ -|.+.++.+.+.+ ..-+..-
T Consensus 114 ~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE 192 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE 192 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence 88888888888887655554444442 3234445555566555432 222 2444555554443 1112222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...-...+...|++++|..++..-....-...+...-+.-+..+...++|.+..++-.++...|. |. |...++.+.
T Consensus 193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~ 268 (932)
T KOG2053|consen 193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN--DD--YKIYTDSVF 268 (932)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC--cc--hHHHHHHHH
Confidence 22233455677888899888833332211344444455667778888899988888888888764 32 333222211
Q ss_pred h----c------------CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH---hcCChhhHHHHHHHHHhcCCCCChhh
Q 011226 276 Q----T------------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV---NLKDLPGAEKCFKEWESGCATYDIRV 336 (490)
Q Consensus 276 ~----~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (490)
+ . +..+...+...+..... ....|.+-+.+.. .-|+.+++.-.|- .+.|.. ..
T Consensus 269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~--~kfg~k---pc 340 (932)
T KOG2053|consen 269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYF--KKFGDK---PC 340 (932)
T ss_pred HHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHH--HHhCCC---cH
Confidence 1 0 11111111111111110 1123333333333 3455555443332 222222 23
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----H---HHHHHHHHHhcCC-----HHHHHHHHHHHH---hcCCC
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAK----T---WEIFSDYYLRNGD-----MKLAVDCLEKAI---DTGRG 401 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~---~~~l~~~~~~~g~-----~~~A~~~~~~~~---~~~~~ 401 (490)
|..=+..|...=..+.-..++...... .++.. . +...+..-...|. .+.-..++.+.. +.|..
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls 418 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS 418 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc
Confidence 333344444444555556666665542 22222 0 1222222222232 233334443332 23333
Q ss_pred CCCCCcCCH---------HHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHH
Q 011226 402 DGGKWVPSS---------ETIRTFMRHFEQEKDVD---GAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLR 467 (490)
Q Consensus 402 ~~~~~~p~~---------~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~ 467 (490)
-+++.-|+. -+.+.|++.|.+.++.. +|+-+++......+ -|..+--.|++.|+-.|- .+.+++.
T Consensus 419 ~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~-hnf~~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 419 LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSP-HNFQTKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 233333432 23467778888888755 56677888777777 888888999999999998 4556677
Q ss_pred HHhhCCCCCCHHHHHHHH
Q 011226 468 RLKMEKVEVSEASKKLLE 485 (490)
Q Consensus 468 ~m~~~~~~p~~~~~~~l~ 485 (490)
.+.-..|.-|.--+-++.
T Consensus 498 tLdIK~IQ~DTlgh~~~~ 515 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHLIFR 515 (932)
T ss_pred hcchHHhhhccchHHHHH
Confidence 777667766655444443
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.45 E-value=1.5e-05 Score=62.04 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
......+...+...|++++|...|+.+...+. .+...+..+...+...|++++|...++...+.+ ..+...+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~ 88 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-------PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCChHHH
Confidence 34444555566666666666666666665432 244555566666666666666666666666654 1335555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..+..++...|++++|...+++..+..|
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5666666666666666666666666654
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00018 Score=65.10 Aligned_cols=119 Identities=11% Similarity=-0.010 Sum_probs=67.3
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 388 (490)
...|+++.|+..++.+....+. |+..+....+.+.+.|+.++|.+.++.+... .|+ ....-.+..+|.+.|++.+|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3456666666666665555443 5555555556666666666666666666654 333 33444455566666666666
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+.++++..... .-|+..|..|..+|...|+..++.....+...
T Consensus 394 i~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 394 IRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 66666665554 13455666666666666665555555544443
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.43 E-value=0.00042 Score=68.05 Aligned_cols=391 Identities=12% Similarity=-0.031 Sum_probs=226.4
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC---HhHHHHHHH
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN---HLTYGSLLN 131 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~li~ 131 (490)
...|..+-..|+...+...|...|+..-+.+ ..+........+.|++..+++.|..+.-...+..|- ...|-..--
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4556666667777778889999999987666 346777888899999999999999885444332111 122333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH--HHHHHcCCh
Q 011226 132 CYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM--RALAAVNDI 209 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~ 209 (490)
.|.+.++...|+.-|+.....++ .|...|..+..+|...|.+..|+++|.+.... .|+. +|.... -.-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhH
Confidence 57788999999999999988765 67889999999999999999999999988763 4543 333322 234678899
Q ss_pred hHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHccCCCCHHHHHHHHHHHHhc
Q 011226 210 SGAERVIEEMKRDGR-----VAADWTTFSNLASIYVEAGLFEKAERALKEL-------ENRNAHRDLSAYQFLITLYGQT 277 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
.++...+..+..... ...-..++..+...+.-.|-..+|..+++.- ..+....+...|-.+-.+|.-.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 999998888765310 1111222222223333333333344433332 2222112222332222222110
Q ss_pred CChh------HHHHHHH-HHHHhCC--------------------CCCchhHHHHHHHHHh----c----CChhhHHHHH
Q 011226 278 GNLS------EVYRIWR-SLRLAFP--------------------NTANISYLNMIQVLVN----L----KDLPGAEKCF 322 (490)
Q Consensus 278 ~~~~------~a~~~~~-~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----~~~~~a~~~~ 322 (490)
-..+ ....++. +....+. ..+..+|..++..|.+ . .+...|...+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 0000 0001111 1111111 1123334334433332 1 1223567777
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD 402 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 402 (490)
....+..-. +..+|+.|.-. ...|.+.-|...|-.-.... +-...+|..+...+.+..+++.|...|.......+
T Consensus 807 KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP-- 881 (1238)
T KOG1127|consen 807 KKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDP-- 881 (1238)
T ss_pred HHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCc--
Confidence 776655443 66777776554 55577777777776555432 22556777777778888899999999988877751
Q ss_pred CCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHhHHHHHHHHHhcCC
Q 011226 403 GGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK----AVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 403 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
.+...|--........|+.-++..+|..--. .|--++..-|......-...|+
T Consensus 882 -----~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 882 -----LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred -----hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 2345554444444566776676666665211 1111444444444444455555
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=7.4e-06 Score=63.74 Aligned_cols=123 Identities=7% Similarity=-0.075 Sum_probs=99.0
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011226 356 LKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE 434 (490)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 434 (490)
.++.+... .| +......+...+...|++++|.+.|+.+...+. .+...+..+..++...|++++|...++
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-------YNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 33 334456677788899999999999999998861 467888899999999999999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhh
Q 011226 435 ILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488 (490)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 488 (490)
+..+.++ .+...+..+..+|...|+...++........+.|+...+..+...|
T Consensus 76 ~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 76 LAAALDP-DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHhcCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 9999988 8899999999999999997777666666667788888876665544
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=4.2e-05 Score=60.13 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYD--IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSD 377 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~ 377 (490)
|..++..+ ..++...+...++.+.+..+... ....-.+...+...|++++|...|+.+......|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333333 35666666666666665443311 122233445666677777777777777765422221 12333455
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 378 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
.+...|++++|+..++...... .....+......+.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--------FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--------hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775532222 33445566667777777777777777654
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.25 E-value=6e-05 Score=57.03 Aligned_cols=109 Identities=9% Similarity=-0.010 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
++..++..+.+.|++++|...|..+.+.... .....+..+...+.+.|+++.|...|+.+...... .......+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----SPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----CCcccHHH
Confidence 4455666777778888888888887764221 11234556677778888888888888887776410 00124556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
..+..++.+.|+.++|...++++.+..| .+..+..
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~ 114 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYP-GSSAAKL 114 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCc-CChhHHH
Confidence 6777777888888888888888888776 5554443
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.24 E-value=4.7e-05 Score=69.26 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 382 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (490)
..++..+...++++.|..+++++.+..+ + ....+++.+...++-.+|.+++++..+... -+...+..-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p--e--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDP--E--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCC--c--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 4455555666777777777777776642 2 334466666667777777777777775422 2445555555667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 383 GDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 383 g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
++++.|+++.+++.+.. |+ ..+|..|..+|.+.|+++.|+..+..+.-.
T Consensus 248 ~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 77777777777777775 54 557777777777777777777777665544
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5.8e-05 Score=68.71 Aligned_cols=123 Identities=21% Similarity=0.201 Sum_probs=70.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
..|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+......-.+.+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344455555566666666666666644 33 33445555555555566666666665432 22444444445556666
Q ss_pred CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 207 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
++.+.|..+.+++.+. .|.+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666664 44455566666666666666666666665543
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=3.2e-06 Score=47.76 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFS 157 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 157 (490)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777776666665
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=0.0002 Score=56.23 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=48.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHhcCCh
Q 011226 206 VNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SAYQFLITLYGQTGNL 280 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 280 (490)
.++...+...++.+.+. .+.+ ....-.+...+...|++++|...|+.+......++. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 44555555555555543 2222 122223344445555555555555555543321111 1222234444455555
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK 323 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (490)
++|+..++...... .....+......+...|+.++|...|+
T Consensus 102 d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 102 DEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555554321111 112233334444455555555554444
No 144
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=6.8e-06 Score=46.35 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGADPN 368 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 368 (490)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777776
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=6.2e-06 Score=46.15 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011226 124 LTYGSLLNCYCKELMTEKAEALLEKMKELNLGF 156 (490)
Q Consensus 124 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666554
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.013 Score=57.45 Aligned_cols=375 Identities=10% Similarity=0.064 Sum_probs=212.8
Q ss_pred HHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHH----HHHHHhhc
Q 011226 41 QQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDA----AENYFVDL 116 (490)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~ 116 (490)
..++.....+.. +..++..+-..|.+.++.++|..+|+...+.. |+......+..+|.|.+++.+ |.+++...
T Consensus 64 ~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~ 140 (932)
T KOG2053|consen 64 KLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF 140 (932)
T ss_pred HHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566665444443 77788888889999999999999999998775 677777788889999888876 45555544
Q ss_pred CCCCCCHhHHHHHHHHHHHc-CCHHH---------HHHHHHHHHhCC-CCCCcchHHHHHHHHHhcCCCCcHHHHHH-HH
Q 011226 117 PETSKNHLTYGSLLNCYCKE-LMTEK---------AEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQ-EM 184 (490)
Q Consensus 117 ~~~~~~~~~~~~li~~~~~~-~~~~~---------a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~ 184 (490)
++ +...+=++++.+... ...+. |.+.++.+.+.+ ..-+..-...-...+...|++++|++++. ..
T Consensus 141 pk---~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~l 217 (932)
T KOG2053|consen 141 PK---RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITL 217 (932)
T ss_pred Cc---ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 43 444333344444332 22222 445566665543 21122222233344556889999999994 33
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----------------cCCHHHH
Q 011226 185 KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----------------AGLFEKA 248 (490)
Q Consensus 185 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~A 248 (490)
.+.-...+...-+--+..+...+++.+..++-.++...| ..| |...+..+.+ .+..+..
T Consensus 218 a~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~ 292 (932)
T KOG2053|consen 218 AEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDEC 292 (932)
T ss_pred HHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHH
Confidence 333233444555567788889999999999999999986 222 3333332221 1222333
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYG---QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
.+...+..... ....|-+-+.++. .-|+.+++...|-+ +-|-.| .|..=+..|...=..+.-..++...
T Consensus 293 ~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l 364 (932)
T KOG2053|consen 293 IEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKL 364 (932)
T ss_pred HHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHh
Confidence 33333322221 1223333333333 44777776554432 223232 3333344454444555666666665
Q ss_pred HhcCCCCC--hh---hHHHHHHHHHhcCC-----hhHHHHHHHHHH---HcC------CCCCHHH---------HHHHHH
Q 011226 326 ESGCATYD--IR---VTNVMIGAYAKEGR-----LENAEELKERAR---RRG------ADPNAKT---------WEIFSD 377 (490)
Q Consensus 326 ~~~~~~~~--~~---~~~~li~~~~~~~~-----~~~a~~~~~~~~---~~~------~~p~~~~---------~~~l~~ 377 (490)
........ .. .+...+..-.-.|. .+....++.+.. ++| +-|+..+ -+.++.
T Consensus 365 ~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid 444 (932)
T KOG2053|consen 365 VLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLID 444 (932)
T ss_pred hccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHH
Confidence 54322111 11 12222333333342 233344443332 222 2334332 356677
Q ss_pred HHHhcCCHH---HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 378 YYLRNGDMK---LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 378 ~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+-+.++.. +|+-+++...... .-|..+=..+++.|+-.|-+..|.+.|+.+--..+
T Consensus 445 ~~rktnd~~~l~eaI~LLE~glt~s-------~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 445 LWRKTNDLTDLFEAITLLENGLTKS-------PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 788887755 6777777777665 14456667888999999999999999887654443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=7.9e-06 Score=45.71 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=0.00034 Score=64.02 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=63.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 421 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 421 (490)
..+...|++++|+..|+++++.+.. +...|..+..+|...|++++|+..++++++... .+...|..+..+|.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------~~~~a~~~lg~~~~ 81 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-------SLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CCHHHHHHHHHHHH
Confidence 4455566677777777766664322 445555666666667777777777777766651 23556666666667
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 422 QEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 422 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
..|++++|...|+++++.+| .+......+..+
T Consensus 82 ~lg~~~eA~~~~~~al~l~P-~~~~~~~~l~~~ 113 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAP-GDSRFTKLIKEC 113 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 77777777777777776666 455444444333
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.96 E-value=0.00016 Score=66.18 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=92.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
...+...|++++|+++|+++++... .+...|..+..+|...|++++|...++++++..| .+...|..+..+|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-------NNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHH
Confidence 4566788999999999999999871 3478888999999999999999999999999998 8999999999999
Q ss_pred HhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhh
Q 011226 456 AAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488 (490)
Q Consensus 456 ~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 488 (490)
...|++.+++....+...+.|+..........|
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999998888877777788899988877777666
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.96 E-value=0.00044 Score=60.94 Aligned_cols=129 Identities=14% Similarity=0.215 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK-EGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
|..++...-+.+..+.|..+|....+.+. .+..+|......-.. .++.+.|..+|+...+. +..+...|...+..+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44445555555555555555555543221 123333333333222 33444455555555543 2334445555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSS----ETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
..++.+.|..+|++.+..- |.. ..|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 82 ~~~d~~~aR~lfer~i~~l--------~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 82 KLNDINNARALFERAISSL--------PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTS--------SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 5555555555555555442 222 355555555555555555555555555543
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.96 E-value=0.00022 Score=51.12 Aligned_cols=90 Identities=18% Similarity=0.167 Sum_probs=42.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++....... .+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHH
Confidence 444444555555555555555443 233334444455555555555555555555444322 12234444444555555
Q ss_pred ChhHHHHHHHHHH
Q 011226 279 NLSEVYRIWRSLR 291 (490)
Q Consensus 279 ~~~~a~~~~~~~~ 291 (490)
++++|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.95 E-value=9.2e-05 Score=67.73 Aligned_cols=120 Identities=15% Similarity=0.122 Sum_probs=88.3
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCC----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHH
Q 011226 87 NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPET----SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFN 162 (490)
Q Consensus 87 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 162 (490)
+.+......+++.+....+++.+..++-..... .--..+..++++.|.+.|..+.+++++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445556667777777777777777777666552 1112345688888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 163 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 163 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887766666667766666666555
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.94 E-value=0.00085 Score=54.52 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=67.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSET 412 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~ 412 (490)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|+..+++.++.. | +...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~ 108 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--------PKQPSA 108 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHH
Confidence 445555556666666666666666665322221 2455556666666677777777776666654 3 2444
Q ss_pred HHHHHHHHHhcCC--------------hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 413 IRTFMRHFEQEKD--------------VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 413 ~~~l~~~~~~~g~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+..+..++...|+ +++|.+++++....+| .+ +..++.-+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p-~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP-NN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc-hh---HHHHHHHHHhcCc
Confidence 5555555555554 5667777777777665 33 6666666666665
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00026 Score=50.74 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
+..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|.+.++...+... .+...+..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-------DNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------cchhHHHHH
Confidence 34455666667777777777777766422 2335556666667777777777777777776651 234566677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
...+...|+++.|...++...+..|
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCC
Confidence 7777777777777777777665543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00053 Score=51.78 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=46.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHH
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITL 273 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 273 (490)
..+...+.+.|++++|...|+.+.+.... +.....+..+..++.+.|++++|...|+.+....... ....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444555555555555555555543100 1112334445555555555555555555554432111 12334444455
Q ss_pred HHhcCChhHHHHHHHHHHHhC
Q 011226 274 YGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (490)
+...|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 555555555555555555543
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.0061 Score=52.35 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAY---QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
.....+...|++++|.+.|+.+....+.. .... -.++.++.+.+++++|...+++..+..+.-...-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34455566677777777777776643322 1111 2345566677777777777777776655433333433333332
Q ss_pred h--c---------------CCh---hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 011226 311 N--L---------------KDL---PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK 370 (490)
Q Consensus 311 ~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 370 (490)
. . .|. ..|...|+.+.+. |-...-..+|...+..+... =..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHH
Confidence 1 1 111 2233444444433 33333344555544444431 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
.--.+..-|.+.|.+..|+.-++.+++.... ..........++.+|...|..++|..+...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124556688999999999999999988611 11235667788899999999999988776553
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=3.9e-05 Score=53.70 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=49.8
Q ss_pred cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEK 424 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 424 (490)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++ .+.+ | +......+..+|.+.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHHHHHHhC
Confidence 46777777777777765331 2334444567777777777777777777 3332 3 2344455567777777
Q ss_pred ChHHHHHHHHH
Q 011226 425 DVDGAEGFLEI 435 (490)
Q Consensus 425 ~~~~a~~~~~~ 435 (490)
++++|+++|++
T Consensus 73 ~y~eAi~~l~~ 83 (84)
T PF12895_consen 73 KYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 77777777765
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.91 E-value=0.00011 Score=52.43 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCC--------CCcHHHHHHHHHHCCCCCCHhhHH
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNL-GFSSMPFNSLMTLYAKTGH--------PEKIPAIIQEMKASSIMPDSYTYN 197 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~p~~~~~~ 197 (490)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..- .-+.+.+|++|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566666888888888888888888 8888888888887766432 235567778888888888888888
Q ss_pred HHHHHHHH
Q 011226 198 VWMRALAA 205 (490)
Q Consensus 198 ~l~~~~~~ 205 (490)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776643
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.89 E-value=0.00035 Score=64.05 Aligned_cols=123 Identities=10% Similarity=-0.017 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENR--NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 302 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (490)
.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.+++.=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 5666667777777777777788888888777654 12122345568888888888888888888877778888888888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
+.|++.+.+.|++..|.++...|...+.-.+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888877666555666665555555554
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.002 Score=57.10 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHHh----cCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-----CHH
Q 011226 302 YLNMIQVLVNL-KDLPGAEKCFKEWES----GCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-----NAK 370 (490)
Q Consensus 302 ~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~ 370 (490)
+..+...|... |+++.|.+.|++..+ .+. ..-..++..+...+.+.|++++|.++|+++...-... +..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444555555 677777777776532 121 0012344556667777777888887777776532211 111
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC--HHHHHHHHHHHH
Q 011226 371 -TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFE 421 (490)
Q Consensus 371 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 421 (490)
.|...+-++...|+.-.|.+.+++....... +..+ ......|+.+|-
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~----F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS----FASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT----STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHH
Confidence 1222333555667777777777777655311 2122 344555565553
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00017 Score=61.08 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 378 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
-+.+.+++++|+..|.++++.. .-|...|..-..+|.+.|.++.|++-.+..+..+| -...+|..|..+|..
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHc
Confidence 3567899999999999999986 13577778888999999999999999999999998 889999999999999
Q ss_pred cCCCcHHHHHHHhhCCCCCCHHHHHHH
Q 011226 458 AGRTSPVMLRRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 458 ~g~~~~~~~~~m~~~~~~p~~~~~~~l 484 (490)
.|++.+++...-+...+.|+..+++-=
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence 999999998888889999999987543
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.85 E-value=0.0089 Score=49.98 Aligned_cols=169 Identities=19% Similarity=0.235 Sum_probs=88.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL 312 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (490)
....+...|++++|.+.|+.+....+.. .....-.++.++.+.|+++.|...++.+.+..|.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 4445556666777777776666543211 12334445666666777777777777766665543333232222222211
Q ss_pred C-------------ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011226 313 K-------------DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 379 (490)
Q Consensus 313 ~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (490)
. ....|... +..++.-|-......+|...+..+.+. =...--.+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1 11222223 333444444445555565555555432 011112345678
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HHHHHHHHHHHHhcCChHHHH
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~ 430 (490)
.+.|.+..|..-++.+++.- |+ ......++.++.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~y--------p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENY--------PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHS--------TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC--------CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999998886 54 345577788888888877554
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00042 Score=58.78 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=84.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
.-+.+.+++.+|...|.+.+...++ |.+.|..-..+|++.|.++.|++=.+..+..+.. ...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3456677888888888888877666 7777777778888888888888887777764322 3457777778888888888
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHH-HhcCChH---HHHHHHHHHHHcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF-EQEKDVD---GAEGFLEILKKAVD 441 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~~ 441 (490)
+|++.|++.++.. |+..+|..=+... .+.+... .+..-++.....+.
T Consensus 167 ~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~ 217 (304)
T KOG0553|consen 167 EAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGA 217 (304)
T ss_pred HHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccC
Confidence 8888888888776 7766665444433 3333333 33344444444444
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.7e-05 Score=42.36 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELN 153 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 153 (490)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666766777777777766666655
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.82 E-value=0.0094 Score=51.21 Aligned_cols=178 Identities=12% Similarity=0.066 Sum_probs=111.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 198 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF---SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 198 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.....+...|++++|...|+.+... .|-+.... -.++.++.+.+++++|...+++..+..+......+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3455567789999999999999886 44444433 456778888999999999999988765443333444444443
Q ss_pred Hh--c---------------CC---hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 011226 275 GQ--T---------------GN---LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI 334 (490)
Q Consensus 275 ~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (490)
+. . .| ..+|+..|+.+++..|. . .-..+|...+..+...- .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~--S-------------~ya~~A~~rl~~l~~~l----a 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN--S-------------QYTTDATKRLVFLKDRL----A 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC--C-------------hhHHHHHHHHHHHHHHH----H
Confidence 31 1 11 23455666666665432 2 22344444333332210 0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRR--GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
..-..+.+.|.+.|.+..|..-++.+++. +..........++.+|...|..++|......+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11124567788899999999999999874 222334556677888999999998888776543
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.80 E-value=0.001 Score=51.46 Aligned_cols=91 Identities=10% Similarity=-0.023 Sum_probs=49.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
+...+...|++++|..+|+.+...++. +..-|-.|..++-..|++++|+..|..+....+ .|+..+..+..+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-------ddp~~~~~ag~c 112 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-------DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCchHHHHHHHH
Confidence 344445556666666666655553222 333444455555555666666666666555541 335555555556
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~ 438 (490)
+...|+.+.|.+.|+.++.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655554
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.002 Score=57.19 Aligned_cols=156 Identities=13% Similarity=-0.001 Sum_probs=75.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHH--HHHhcCChhhHHHHHHHHHhcCCCCChh-hHHHHHH------
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ--VLVNLKDLPGAEKCFKEWESGCATYDIR-VTNVMIG------ 342 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~------ 342 (490)
.++.-.|+.++|.++--.+.+.... ..+...++ ++...++.+.+...|++....++..... .-....+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT---NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc---hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 3455567777777766665553321 22233333 3335667777777777766654431111 0011111
Q ss_pred ----HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH---HHH--HhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHH
Q 011226 343 ----AYAKEGRLENAEELKERARRRGADPNAKTWEIFS---DYY--LRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SET 412 (490)
Q Consensus 343 ----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~---~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~ 412 (490)
-..+.|++..|.+.|.+.+.. .|+..--+..+ ++. .+.|+.++|+.--++..... +. ...
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~i--dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--------~syika 323 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNI--DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--------SSYIKA 323 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcC--CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--------HHHHHH
Confidence 123455666666666665543 33322222111 111 14456666666655555543 22 233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
+..-..++.-.++|++|.+-++++.+..
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333444555566666666666665544
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.00088 Score=59.04 Aligned_cols=130 Identities=17% Similarity=0.227 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
+|..+++..-+.+..+.|..+|++..+.+. .+...|...... |...++.+.|.++|+...+..+ .+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 456666666666667777777777664321 233334333333 2224555557777776665533 2445556666666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYD---IRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
...|+.+.|..+|+..... ..++ ...|...+..-.+.|+++.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6667777777777766554 2111 236666666666666666666666666653
No 169
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.78 E-value=0.027 Score=50.95 Aligned_cols=136 Identities=9% Similarity=-0.079 Sum_probs=85.8
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL 129 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 129 (490)
.+|-+..+|..++..|..++..++..+++++|..-- +.-..+|...+..-....++.....+|.+.....-+...|..-
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lY 115 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLY 115 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHH
Confidence 456678889999999999999999999999986543 2334456666766666788999999998887755677778777
Q ss_pred HHHHHHcCCHH------HHHHHHHHHHh-CCCCCC-cchHHHHHHHHH---hcCCC------CcHHHHHHHHHH
Q 011226 130 LNCYCKELMTE------KAEALLEKMKE-LNLGFS-SMPFNSLMTLYA---KTGHP------EKIPAIIQEMKA 186 (490)
Q Consensus 130 i~~~~~~~~~~------~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---~~~~~------~~a~~~~~~~~~ 186 (490)
+.-..+.++.- ...+.|+-... .++.|- ...|+..+..+- ..|.| +...+.|.+|..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 76544433211 12233333333 234343 345555555433 23444 445566666654
No 170
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.77 E-value=0.0027 Score=49.11 Aligned_cols=94 Identities=10% Similarity=-0.073 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
-.+...+...|++++|.++|+.+...++ -+..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 3344455567777777777777766553 3445555666666667777777777777766543 2556666677777777
Q ss_pred CChhHHHHHHHHHHHC
Q 011226 207 NDISGAERVIEEMKRD 222 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~ 222 (490)
|+.+.|.+.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776665
No 171
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.77 E-value=0.00047 Score=49.24 Aligned_cols=67 Identities=7% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 243 GLFEKAERALKELENRNA-HRDLSAYQFLITLYGQTG--------NLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++..+
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 344444444444333321 1123334444444444444444444444443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=5.9e-05 Score=52.79 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=6.5
Q ss_pred HHHHHhcCChhHHHHHH
Q 011226 341 IGAYAKEGRLENAEELK 357 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~ 357 (490)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.0034 Score=60.22 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...|..+.......|++++|...+++++... |+...|..+...+...|+.++|.+.++++..++|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44566666555556788888888888888876 7777788888888888888888888888887776
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.73 E-value=0.00029 Score=47.10 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK-DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 441 (490)
+...|..+...+...|++++|+..|++.++.. |+ ...|..+..++...| ++++|.+.+++.++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677888888899999999999999999987 54 778888888899998 79999999999888764
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.73 E-value=0.00029 Score=46.36 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...+.+.|++++|++.|+++++.. | +...+..+..++...|++++|...|+++++..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4567889999999999999999987 5 478889999999999999999999999999887
No 176
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.1e-05 Score=41.23 Aligned_cols=29 Identities=38% Similarity=0.612 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.0027 Score=51.54 Aligned_cols=88 Identities=8% Similarity=0.027 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI 306 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (490)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.....+. +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34455666666667777777777776665432221 245556666666666666666666666554332 233344444
Q ss_pred HHHHhcCChhh
Q 011226 307 QVLVNLKDLPG 317 (490)
Q Consensus 307 ~~~~~~~~~~~ 317 (490)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555554433
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0034 Score=55.65 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHc----cCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC-----ch
Q 011226 232 FSNLASIYVEA-GLFEKAERALKELENR----NAH-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA-----NI 300 (490)
Q Consensus 232 ~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~ 300 (490)
+..+...|... |++++|.+.|++..+. +.. .-...+..+...+.+.|++++|.++|+++.......+ ..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444455555 6666666666665431 100 0123344556666777777777777776654322111 11
Q ss_pred -hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 301 -SYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 301 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
.|...+-++...||...|.+.++.....
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1222333455566777777777766544
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0011 Score=53.55 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
++..+...+...|++++|...++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.0039 Score=46.45 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=21.3
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPD--SYTYNVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
..|+.++|+.+|++....|+... ...+-.+...+...|++++|..+++....
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444433322 11222333344444444444444444443
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=0.00023 Score=47.37 Aligned_cols=62 Identities=29% Similarity=0.348 Sum_probs=51.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
...|++++|+++|+++.... | +...+..+..+|.+.|++++|..+++++....+ .++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP-DNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT-THHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CHHHHHHH
Confidence 56799999999999999987 5 688888999999999999999999999999887 44444443
No 182
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0046 Score=52.99 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=74.2
Q ss_pred HHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC
Q 011226 291 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP 367 (490)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p 367 (490)
...++. |...|..|...|...|+.+.|..-|....+..++ |+..+..+..++.... ...++..+|+++...+..
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~- 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA- 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-
Confidence 344443 6677888888888888888888888887766444 6666666666555432 345677888888876433
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|..+...+...+...|++.+|...|+.|++..
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 55566666677788888888888888888876
No 183
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.00031 Score=56.86 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=73.2
Q ss_pred HHHHhhcCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHH
Q 011226 110 ENYFVDLPETSKNHLTYGSLLNCYCKE-----LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM 184 (490)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 184 (490)
...|+.......+..+|..++..|.+. |.++=....+..|.+.|+..|..+|+.|++.+=+ |.+-
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv--------- 103 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV--------- 103 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------
Confidence 344444433335667777777777643 6677777788888889998999999998887654 2221
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC
Q 011226 185 KASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 244 (490)
Q Consensus 185 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (490)
|.. .+.++..- --.+-+-|++++++|...| +-||..++..+++.+++.+.
T Consensus 104 ------p~n-~fQ~~F~h--yp~Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 104 ------PRN-FFQAEFMH--YPRQQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccc-HHHHHhcc--CcHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccH
Confidence 111 11111111 1124556777888888877 88888888888888776654
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.027 Score=50.36 Aligned_cols=214 Identities=15% Similarity=0.053 Sum_probs=133.2
Q ss_pred CCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHhCCCCCchhH-
Q 011226 227 ADWTTFSNL-ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT--LYGQTGNLSEVYRIWRSLRLAFPNTANISY- 302 (490)
Q Consensus 227 ~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 302 (490)
|...++..+ ..++.-.|+.++|.+.--...+... ...+...++ ++.-.++.+.+...|++.+..++ +-..-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHH
Confidence 444455443 3556678999999998888776432 223333443 34456888999999999877554 32211
Q ss_pred --HH----------HHHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 303 --LN----------MIQVLVNLKDLPGAEKCFKEWESGC---ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 303 --~~----------l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
.. -.+-..+.|++..|.+.|.+.+... ..++...|........+.|+..+|+.--++..+.
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---- 316 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---- 316 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----
Confidence 11 1233567899999999999987643 4556667777777888999999999999988874
Q ss_pred CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011226 368 NAKT---WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 368 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 444 (490)
|..- |..-..++...++|++|.+-++...+...+ .-...++.....++.+..+.+ -..++-........+.
T Consensus 317 D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-----~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~ei 390 (486)
T KOG0550|consen 317 DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-----CEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEI 390 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchh
Confidence 3322 222233556678899999999998888621 012444444444454433322 2233333333333356
Q ss_pred HHhHHHHHHHH
Q 011226 445 VEVFEPLIRTY 455 (490)
Q Consensus 445 ~~~~~~l~~~~ 455 (490)
..+|..+.-.+
T Consensus 391 kkayrk~AL~~ 401 (486)
T KOG0550|consen 391 KKAYRKLALVH 401 (486)
T ss_pred hhHHHHHHHHh
Confidence 66676555554
No 185
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.58 E-value=0.0046 Score=50.02 Aligned_cols=101 Identities=14% Similarity=0.031 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
...|..+...+...|++++|...|++.......| ...++..+...+...|++++|+..+++...... ....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-------~~~~ 107 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-------FLPQ 107 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------CcHH
Confidence 4556677777888899999999999887653222 234677788888899999999999999887641 2345
Q ss_pred HHHHHHHHHH-------hcCChHHHH-------HHHHHHHHcCC
Q 011226 412 TIRTFMRHFE-------QEKDVDGAE-------GFLEILKKAVD 441 (490)
Q Consensus 412 ~~~~l~~~~~-------~~g~~~~a~-------~~~~~~~~~~~ 441 (490)
.+..+...+. ..|+++.|. .++++.....|
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5556665665 777777554 44445555554
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.57 E-value=0.0056 Score=58.73 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=92.1
Q ss_pred cCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC--------ChhhHHHHHHHH
Q 011226 259 NAHRDLSAYQFLITLYGQT-----GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK--------DLPGAEKCFKEW 325 (490)
Q Consensus 259 ~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~ 325 (490)
..+.+...|...+++.... ++...|..+|++..+..+. ....+..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3445667777777765432 2356788888888775543 2233433333332211 122333333333
Q ss_pred Hhc-CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 326 ESG-CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 326 ~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
... ....+...|..+.......|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++.....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 222 12335577777777777789999999999999986 4688889999999999999999999999999887
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.0003 Score=46.86 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=44.0
Q ss_pred hccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 011226 66 RDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL 129 (490)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 129 (490)
.+.|++++|++.|+.+.... +-+......+..++.+.|++++|.++++.+....|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45678888888888887665 3366666677788888888888888888887766664444433
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.00051 Score=60.69 Aligned_cols=264 Identities=14% Similarity=-0.004 Sum_probs=162.4
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhhCCHHHHHHHHhhcCC-------CCCCHhHHHHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVS----DQAIHLDLVAKVQGIDAAENYFVDLPE-------TSKNHLTYGSLL 130 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~li 130 (490)
-..+++.|+....+.+|+...+.|. -|.. +|..+.++|.-.+++++|++....-.. .--...+...|-
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 3468999999999999999999883 3443 566677788888899999887543211 111112223344
Q ss_pred HHHHHcCCHHHHHHHHHH----HHhCCC-CCCcchHHHHHHHHHhcCCC--------------------CcHHHHHHHHH
Q 011226 131 NCYCKELMTEKAEALLEK----MKELNL-GFSSMPFNSLMTLYAKTGHP--------------------EKIPAIIQEMK 185 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~ 185 (490)
..+--.|.+++|+-.-.+ ..+.|- ......+..+...|...|+. +.|.++|.+=.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 444455677766543222 112110 12234455566666655431 22334433221
Q ss_pred ----HCCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 186 ----ASSI-MPDSYTYNVWMRALAAVNDISGAERVIEEMK----RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 186 ----~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
+.|- -.....|..|.+.|.-.|+++.|+...+.-. +.|.-......+..+.++++-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0122446666667777889999988765533 334223345567889999999999999999988754
Q ss_pred HccC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----h-CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011226 257 NRNA-----HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL----A-FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 326 (490)
Q Consensus 257 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (490)
...+ .....+...|...|.-..++.+|+.++..-.. . ...-....+.+|..++...|..++|..+...-.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3211 12345666788888888889999988765332 1 112244577889999999999999988776643
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.55 E-value=0.01 Score=44.23 Aligned_cols=109 Identities=18% Similarity=0.089 Sum_probs=58.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
+..++-..|+.++|+.+|++....|..... ..+-.+...+...|++++|..++++..... |+..+ +......+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~--~~~l~~f~A 82 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDEL--NAALRVFLA 82 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccc--cHHHHHHHH
Confidence 344555667777777777777666654332 234445556666777777777777666653 00000 112222233
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
.++...|+.++|.+.+-.... ++...|..-+..|.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 355666777777666655443 23335555555544
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.54 E-value=0.055 Score=48.09 Aligned_cols=291 Identities=15% Similarity=0.076 Sum_probs=189.8
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHH--HhcCCCCcHHHHHHHHHHCCCCCCHhhHH---
Q 011226 125 TYGSLLNCYCK--ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLY--AKTGHPEKIPAIIQEMKASSIMPDSYTYN--- 197 (490)
Q Consensus 125 ~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--- 197 (490)
-|..|-.++.. .|+-..|.++-.+-... +.-|....-.|+.+- .-.|+++.|.+-|+.|.. |+.|-.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 45555555443 47777887776654422 223444455555443 347999999999999986 333322
Q ss_pred -HHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-CCCCHH--HHHHHHHH
Q 011226 198 -VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-AHRDLS--AYQFLITL 273 (490)
Q Consensus 198 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~l~~~ 273 (490)
.|.-..-+.|+.+.|.++-+..-.. -+.-...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtA 235 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTA 235 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHH
Confidence 2333345788999999998888775 45555677889999999999999999998765532 233321 11222222
Q ss_pred HHh---cCChhHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 274 YGQ---TGNLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 274 ~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
-.. ..+...|...-.+..+ ..||..-- ..-..++.+.|+..++-.+++.+-+..+.|++ ...|....-
T Consensus 236 kA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~ 307 (531)
T COG3898 236 KAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARS 307 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcC
Confidence 111 2344555555444433 44554422 33457788999999999999999887766653 233444444
Q ss_pred hhHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh-cCCh
Q 011226 350 LENAEELKERARR-RGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ-EKDV 426 (490)
Q Consensus 350 ~~~a~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~ 426 (490)
-+.+..-+++..+ ..++|| ..+...+..+-...|++..|..--+...+.. |....|..|.+.-.. .|+-
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--------pres~~lLlAdIeeAetGDq 379 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--------PRESAYLLLADIEEAETGDQ 379 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--------chhhHHHHHHHHHhhccCch
Confidence 4555555555543 224444 4566667778888999999988888877766 888888888876654 4999
Q ss_pred HHHHHHHHHHHHc
Q 011226 427 DGAEGFLEILKKA 439 (490)
Q Consensus 427 ~~a~~~~~~~~~~ 439 (490)
.++...+.+....
T Consensus 380 g~vR~wlAqav~A 392 (531)
T COG3898 380 GKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999888764
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.51 E-value=0.064 Score=47.99 Aligned_cols=84 Identities=25% Similarity=0.268 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
+.+..+.-+...|+...|.++-.+. .+ |+...|...+.+++..++|++-.++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455555566665555554443 12 4556666666666666666655544321 113355666666666
Q ss_pred hcCCHHHHHHHHHH
Q 011226 381 RNGDMKLAVDCLEK 394 (490)
Q Consensus 381 ~~g~~~~A~~~~~~ 394 (490)
+.|+..+|..++.+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 66666666666555
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.031 Score=44.17 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=84.6
Q ss_pred CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHH
Q 011226 296 NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTW 372 (490)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~ 372 (490)
.|+...-..|..++...|+..+|...|.+....-...|....-.+.++....+++..|...++.+-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 345555556677777777777777777777766666666677777777777777777777777776642 1233 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 373 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
-.+.+.+...|.+.+|..-|+...... |+...-......+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--------PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 455667777777777777777777765 66555555555666777666655433
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.50 E-value=0.073 Score=48.38 Aligned_cols=216 Identities=10% Similarity=0.026 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHccCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch-----hHHHHHHHHH-h--
Q 011226 244 LFEKAERALKELENRNAH----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-----SYLNMIQVLV-N-- 311 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~-~-- 311 (490)
+.+++..+-+.+....+. .=..+|..++...++.++...|-+.+.-+....+..... +-..+-+..+ .
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~ 353 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDE 353 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchH
Confidence 455555555544332111 113567777788888888888888877666543322111 0011112222 1
Q ss_pred -cCChhhHHHHHHHHHhcCCCCChhhHHHHH---HHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHH--
Q 011226 312 -LKDLPGAEKCFKEWESGCATYDIRVTNVMI---GAYAKEGR-LENAEELKERARRRGADPNAKTWEIFS----DYYL-- 380 (490)
Q Consensus 312 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~----~~~~-- 380 (490)
..+...-..+|..+...++. .......|+ .-+-+.|. -++|+.+++.+.+.. .-|..+-|.+. .+|.
T Consensus 354 ~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qa 431 (549)
T PF07079_consen 354 SYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQA 431 (549)
T ss_pred HHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence 11112223334444333322 111222222 23444454 566677776666531 11222222221 1222
Q ss_pred -hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 381 -RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH--FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 381 -~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
....+.+-+.+-+-+.+.|++|.. ..+...-+.|.++ +...|++.++.-.-..+.+.. |++.+|..+.-++..
T Consensus 432 Ls~~~~~rLlkLe~fi~e~gl~~i~--i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--PS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 432 LSMHAIPRLLKLEDFITEVGLTPIT--ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--PSPQAYRLLGLCLME 507 (549)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccc--ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHH
Confidence 223344445554555555554311 1123344444432 345666666655544444443 466666666666666
Q ss_pred cCCCcHHH
Q 011226 458 AGRTSPVM 465 (490)
Q Consensus 458 ~g~~~~~~ 465 (490)
..++.+|.
T Consensus 508 ~k~Y~eA~ 515 (549)
T PF07079_consen 508 NKRYQEAW 515 (549)
T ss_pred HhhHHHHH
Confidence 55554443
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.057 Score=45.27 Aligned_cols=136 Identities=9% Similarity=0.011 Sum_probs=95.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH----
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS---- 376 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~---- 376 (490)
..+.++..+.-.|.+.-...++.++.+..++.++.....|++.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666777777777788888888877766778888888888888888888888888776533333444443333
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 377 -DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 377 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
..|.-.+++..|...+.++..... .++...+.-.-+..-.|+..+|.+.++.|+...|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-------~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-------RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-------CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 235566788888888888887761 234444444445556788999999999999887644
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.39 E-value=0.0056 Score=53.01 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
..|...+..+.+.|++++|...|+.+.+.. |+. ..+..+...|...|++++|...|+.+.+... +. ....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP--~s--~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP--KS--PKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CC--cchh
Confidence 345555555566788999999998888753 333 4566777888889999999999999887751 00 0124
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..+..++..+...|+.+.|..+|+++++..|
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5556667778888999999999999888776
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0056 Score=51.03 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 139 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
.+..+++|++-.. .+-+.++..+.-.+.+.-...++++.++...+.++.....|++...+.||.+.|...|+.
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3556666665443 345666677777777777788888887766566777777788888888888888888887
Q ss_pred HHHCCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 219 MKRDGRVAADWTTFS-----NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
..+.. ...+..+++ .....|.-++++..|...+.++..... .|+...|.-.-+..-.|+..+|++.++.|...
T Consensus 238 vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 238 VEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66543 333333333 333445566777888888877766433 34444554444455567788888888888775
Q ss_pred CCCC
Q 011226 294 FPNT 297 (490)
Q Consensus 294 ~~~~ 297 (490)
.+.|
T Consensus 316 ~P~~ 319 (366)
T KOG2796|consen 316 DPRH 319 (366)
T ss_pred CCcc
Confidence 4433
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.39 E-value=0.003 Score=56.02 Aligned_cols=138 Identities=14% Similarity=0.050 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHH----HhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCC-CCCH
Q 011226 300 ISYLNMIQVLVNLKDLPGAEKCFKEW----ESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARR----RGA-DPNA 369 (490)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~ 369 (490)
..|..|.+.|.-.|+++.|+...+.- .+.|-+. ....+..|..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777788999988766552 2222211 234667788888888999999988877543 221 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
.+..++...|.-..++++|+.++.+-+...-.-+ +..-....+.+|..+|...|..+.|..+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455677777777889999988876554310000 0113467788999999999999999988777655
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.017 Score=49.67 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=87.3
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTG 399 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 399 (490)
+.-...++. |...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++.... ...++..+|++++...
T Consensus 146 e~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 333444565 88999999999999999999999999999852 235566666666654332 4568999999999987
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
. -|+.....|...+...|++.+|...|+.|++..|
T Consensus 224 ~-------~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 224 P-------ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred C-------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 2 4577778888899999999999999999999987
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.0013 Score=43.80 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELEN 257 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~ 257 (490)
..+|..+...+...|++++|+..|++.++. .+.+...|..+..+|...| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555555555555555555555554 3445555555555555555 45555555555443
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.0013 Score=43.15 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
...+...|++++|...|+++++. .+-+...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666654 344555555666666666666666666665554
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.32 E-value=0.054 Score=42.88 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=80.9
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CCHHHH
Q 011226 189 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RDLSAY 267 (490)
Q Consensus 189 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 267 (490)
+-|+...-..|..+....|+..+|...|++... |-+.-|....-.+.++....+++..|...++++.+-... .+..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 346666666677777777777777777777776 336666776667777777777777777777777653311 112234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
-.+.+.+...|.+.+|...|+......+.|....| ....+.+.|+.+++..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHH
Confidence 45566777777777777777777765444433332 23344556655555433
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.17 Score=48.61 Aligned_cols=178 Identities=10% Similarity=-0.009 Sum_probs=85.2
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhC-CCCCChh--hH----HHHHHHHHhhCCHHHHHHHHhhcCCCCCCHh
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKR-GMNKTVS--DQ----AIHLDLVAKVQGIDAAENYFVDLPETSKNHL 124 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~--~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 124 (490)
.|.+..|..+...-...-.++-|...|-+.... |++.-.. +. ..-...-+--|++++|.+++-.+...
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr----- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR----- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh-----
Confidence 355555555555445555555555555544222 2111000 00 00011222347777887777666541
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNL--GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA 202 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 202 (490)
...|..+.+.|+|-...++++.--. +. ..-...|+.+...++....|++|.+.|..-.. ....+.+
T Consensus 764 --DLAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ec 831 (1189)
T KOG2041|consen 764 --DLAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIEC 831 (1189)
T ss_pred --hhhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHH
Confidence 2234555666776666665543110 00 01124566666666666666666666653321 1124455
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011226 203 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 252 (490)
+.+..++++-+.+.+. .+.+....-.+...+.+.|.-++|.+.+
T Consensus 832 ly~le~f~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 832 LYRLELFGELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHhhhhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 5555555554443333 3333344445555666666666555554
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0088 Score=48.71 Aligned_cols=31 Identities=0% Similarity=-0.094 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHh
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVN 311 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (490)
+-|++++++|...|+.||..++..+++.+.+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 3445555555555555555555555555533
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.2 Score=48.25 Aligned_cols=337 Identities=14% Similarity=0.048 Sum_probs=177.6
Q ss_pred CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhH------------HHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 011226 87 NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLT------------YGSLLNCYCKELMTEKAEALLEKMKELNL 154 (490)
Q Consensus 87 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 154 (490)
.|.+..|..+.+.....-.++.|...|-+.... +.... -.+=+.+ --|++++|.++|-++-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh-
Confidence 477777888777777777777777777666541 11111 1111122 2377888888876665543
Q ss_pred CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH
Q 011226 155 GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS 233 (490)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (490)
..|..+.+.|+|-.+.++++.--.. .-..-...|+.+...++....|++|.+.|..-... .
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------E 826 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------H
Confidence 3455666677776666665421100 00011345777777777777788887777654221 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
..+.++.+..++++-..+...+. -+....-.+.+++.+.|.-++|.+.+-+-. .| ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHH
Confidence 35666666666666555555443 355566778888888888888887765431 12 13466777777
Q ss_pred ChhhHHHHHHHHHhcCCC-----------CChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHHHHHH
Q 011226 314 DLPGAEKCFKEWESGCAT-----------YDIRVTNVMIGAYAKEGRLENAEELKERARR----RGADPNAKTWEIFSDY 378 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~l~~~ 378 (490)
++.+|.++-+...-..+. .+..+ ..-|..+.+.|+.-+|-+++.+|.+ ++.+|-..---.++.+
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 887777766543211000 00011 1234556677777777777777754 2333222111111111
Q ss_pred H---------------HhcCCHHHHHHHHHHHHhcCCCC--CCCCc-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 011226 379 Y---------------LRNGDMKLAVDCLEKAIDTGRGD--GGKWV-PSSETIRTFMRHFEQEKDVDGAEGFLEILKKA- 439 (490)
Q Consensus 379 ~---------------~~~g~~~~A~~~~~~~~~~~~~~--~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 439 (490)
+ -..|..++|..+++...-..... ...++ .....|..|..--...|.++.|...--.+...
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 1 12355555655444332221000 00000 12233334444445667777777643333331
Q ss_pred CCCCCHHhHHHHHHHHHhcCC
Q 011226 440 VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+.-|-..+|..|.-+-+....
T Consensus 1052 d~lpP~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRA 1072 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhh
Confidence 222556677766655554444
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.11 Score=46.96 Aligned_cols=165 Identities=18% Similarity=0.042 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCC----C-CHhHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCcchHHH
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETS----K-NHLTYGSLLNCYCK---ELMTEKAEALLEKMKELNLGFSSMPFNS 163 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (490)
+...++-.|-...+++...++.+.+...+ + +..+-....-++.+ .|+.++|++++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556777888888888888887731 1 12222234445556 7888999999888666556688888888
Q ss_pred HHHHHHh----c-----CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChh----HHHHHH----HHHHHCCC--
Q 011226 164 LMTLYAK----T-----GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDIS----GAERVI----EEMKRDGR-- 224 (490)
Q Consensus 164 l~~~~~~----~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~----~~~~~~~~-- 224 (490)
+...|-. . ...++|...|.+.-+. .||.++--.++..+...|... +..++- ..+.+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7776643 1 2356777777766543 355443223333333344211 222222 22223331
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
...+...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2345556678889999999999999999999875
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.23 Score=48.23 Aligned_cols=325 Identities=15% Similarity=0.080 Sum_probs=158.9
Q ss_pred hcCCCCHHhHHH-----HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC---CHHHHHHHHhhcCCCC
Q 011226 49 SKKRVFKWEVGD-----TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQ---GIDAAENYFVDLPETS 120 (490)
Q Consensus 49 ~~~~~~~~~~~~-----ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 120 (490)
-|.+.+...|.. ++..+...+.+..|+++-+++...-..- ...|......+.+.. +-+.+..+-+++...-
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 377777777766 4778888999999999999884332222 445555555555542 2233333333443321
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--------
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNL----GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-------- 188 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------- 188 (490)
..-..|..+.+....+|+++-|..+++.=...+- -.+..-+...+.-+.+.|+.+-...++-.+...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3345677788777789999999988765222210 0122334555666677777777777766654421
Q ss_pred --CCC-CHhhHHHHHH--------HHHHcCChhHHHHHH--HHHHHCCCCCCCHHHHHHHHHHHHHcCCHH---H-----
Q 011226 189 --IMP-DSYTYNVWMR--------ALAAVNDISGAERVI--EEMKRDGRVAADWTTFSNLASIYVEAGLFE---K----- 247 (490)
Q Consensus 189 --~~p-~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~----- 247 (490)
..| ....|..+++ .+.+.++-..+...| +.........+-........+.+.+..... +
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 011 1111211111 011112211111111 110000000111111122333343333211 1
Q ss_pred --HHHHHHHHHH-ccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 011226 248 --AERALKELEN-RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 248 --A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
-+++.+.+.. .|......+.+--+.-+...|+-.+|.++-.+. --||...|-.=+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1111111111 111111222333344455566666666555444 345666666666666666666665554443
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 325 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
.. ++.-|..++.+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++.-
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 22 234555566667777777777666654221 11 34556666666666665543
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.22 E-value=0.012 Score=50.95 Aligned_cols=99 Identities=9% Similarity=0.114 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC--CCHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH--RDLSAYQF 269 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 269 (490)
.|...+....+.|++++|...|+.+++. .|.+ ...+..+...|...|++++|...|+.+.+.-.. .....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445567788888888877775 3333 345667777777778888888777777653221 12334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCC
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFP 295 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (490)
+..++...|+.++|..+|+.+.+..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55566677777777777777776554
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.16 E-value=0.12 Score=46.71 Aligned_cols=36 Identities=14% Similarity=-0.078 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011226 408 PSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 408 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 444 (490)
.+-..+.+++.++.-.|++++|.+.+++|....+ |.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~-~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP-PA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-cc
Confidence 5666778899999999999999999999998875 54
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.14 E-value=0.014 Score=43.99 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG---------RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
..++..++.++++.|+.+....+++..-.-+ .++++...|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555666666666665555554433221 4556668899999999999999999999999999998874
Q ss_pred -CCCCCHHhHHHHHHHHHhcCC
Q 011226 440 -VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 440 -~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+++.+...|..|++=....-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhcC
Confidence 444568899988887655544
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.14 E-value=0.12 Score=43.21 Aligned_cols=177 Identities=13% Similarity=0.085 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC--chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
.-.....+...|++++|...|+.+....+... ......++.++.+.|+++.|...++.+.+.-+.....-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445567788999999999999888755322 2244567778888899999999988887765543333333333333
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 345 AKEGRLENAEELKERARRRGADPN-------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
+......... . ...| ...+..++.-|-...-..+|...+..+.+.- ...-..+.
T Consensus 88 ~~~~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----------a~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----------AEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----------HHHHHHHH
T ss_pred HHHHhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 2211111110 0 0011 1123334444444444555555444443321 01112356
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhcCCCc
Q 011226 418 RHFEQEKDVDGAEGFLEILKKAVDDL--GVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 462 (490)
..|.+.|.+..|..-++.+++.-|.. ...+...++.+|.+.|...
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 77999999999999999999976521 2346677888888888743
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.12 E-value=0.0052 Score=41.47 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..|.+.+++++|+++++.++..+. .++..+.....++.+.|++++|.+.|+++.+.+|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-------DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 467888999999999999999871 3477778888899999999999999999998887
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.06 E-value=0.21 Score=44.67 Aligned_cols=280 Identities=13% Similarity=0.052 Sum_probs=138.5
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhhCCHHHHHHHHhhcCCCCCCHhHHH----HHHHHHHHcCCHHH
Q 011226 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLV--AKVQGIDAAENYFVDLPETSKNHLTYG----SLLNCYCKELMTEK 141 (490)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~ 141 (490)
.|+-..|.++-.+..+. +..|..-...++.+- .-.|+++.|.+-|+.|.. |+.+-. .|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 45666666555444211 122332233333322 234777777777777765 333322 22222334566666
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCCHhh--HHHHHHHH---HHcCChhHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-IMPDSYT--YNVWMRAL---AAVNDISGAERV 215 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~--~~~l~~~~---~~~~~~~~a~~~ 215 (490)
|.+.-++.-..-. .-...+...+...+..|+|+.|+++++.-.+.. +.++..- -..|+.+- .-..|...|...
T Consensus 173 Ar~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 6666666555432 224556666667777777777777776554432 2333221 11222211 112244555555
Q ss_pred HHHHHHCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-
Q 011226 216 IEEMKRDGRVAADWT-TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA- 293 (490)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 293 (490)
-.+..+ ..|+.. .-..-...+.+.|+..++-.+++.+-+..+.|+.. . +..+.+.|+ .+..-++...+.
T Consensus 252 A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHHHHHHHHH
Confidence 444444 233322 12234566677777777777777777655555431 1 112233443 333333332221
Q ss_pred CCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHc
Q 011226 294 FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA-KEGRLENAEELKERARRR 363 (490)
Q Consensus 294 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~ 363 (490)
..+| +..+...+..+....|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+.++.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1222 3344455666666777777666655555443 344555555555433 347777777777776653
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.0057 Score=48.12 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH------HHHHh-hCCCCCCHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM------LRRLK-MEKVEVSEASKKLL 484 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~------~~~m~-~~~~~p~~~~~~~l 484 (490)
....++..+...|+++.|...++.+...+| -|...|..++.+|...|+...++ ...+. +.|+.|++.+..+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 456677788899999999999999999999 99999999999999999955443 23333 56999999998887
Q ss_pred HHh
Q 011226 485 EAI 487 (490)
Q Consensus 485 ~~~ 487 (490)
.++
T Consensus 143 ~~i 145 (146)
T PF03704_consen 143 REI 145 (146)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.96 E-value=0.29 Score=44.62 Aligned_cols=373 Identities=11% Similarity=0.083 Sum_probs=197.5
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC---------HHHHHHHHhh-cCCCC
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG---------IDAAENYFVD-LPETS 120 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~-~~~~~ 120 (490)
.+.-+..+...+.+=...+++.....+|........ +...|...++-..+... +-+|-++.-. +.-.+
T Consensus 72 fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~ 149 (660)
T COG5107 72 FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEP 149 (660)
T ss_pred CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccc
Confidence 344556677777777778899999999999977764 45556666655554432 1222222222 11123
Q ss_pred CCHhHHHHHHHHH---H------HcCCHHHHHHHHHHHHhCCCCCCcchHH------HHHHHHH-h--cCC----CCcHH
Q 011226 121 KNHLTYGSLLNCY---C------KELMTEKAEALLEKMKELNLGFSSMPFN------SLMTLYA-K--TGH----PEKIP 178 (490)
Q Consensus 121 ~~~~~~~~li~~~---~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~-~--~~~----~~~a~ 178 (490)
.+...|+..+..+ - .+.++|...+.+.+++...+..=...|+ .=++-.. + .|+ +-.|.
T Consensus 150 ~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar 229 (660)
T COG5107 150 QSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSAR 229 (660)
T ss_pred cccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 3445566554432 2 2334455566677766542211111121 1111000 0 111 22444
Q ss_pred HHHHHHHH--CCCCC----CHhhH-----------HHHHHHHHHcC-----C--hhHHHHHHHHHHHCCCCCCCHHHHHH
Q 011226 179 AIIQEMKA--SSIMP----DSYTY-----------NVWMRALAAVN-----D--ISGAERVIEEMKRDGRVAADWTTFSN 234 (490)
Q Consensus 179 ~~~~~~~~--~~~~p----~~~~~-----------~~l~~~~~~~~-----~--~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (490)
..+++... .|+.. +..++ ..+|+--...| + .....-++++.... ++.....|--
T Consensus 230 ~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~d 307 (660)
T COG5107 230 QRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFD 307 (660)
T ss_pred HHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHH
Confidence 44554432 13211 12222 22232211111 1 11222345555554 5666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--------------CC-----
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--------------FP----- 295 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~----- 295 (490)
.-..+...++-+.|+...+.-... .|+. .-.+...|.-..+-+.+...|+...+. +.
T Consensus 308 ys~Y~~~isd~q~al~tv~rg~~~--spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e 383 (660)
T COG5107 308 YSEYLIGISDKQKALKTVERGIEM--SPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFE 383 (660)
T ss_pred HHHHHhhccHHHHHHHHHHhcccC--CCch--heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCcc
Confidence 666677778888888777653321 1221 111222333333333333333322110 00
Q ss_pred ----------CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 296 ----------NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 296 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
..-...|...+++..+..-++.|..+|.++.+.+ ..+++.++++++..++. |+...|..+|+--...
T Consensus 384 ~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~- 461 (660)
T COG5107 384 YSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK- 461 (660)
T ss_pred ccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-
Confidence 0012345556666667777788888888887776 66677777887776654 6777788888766553
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 365 ADPNAKTW-EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 365 ~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
-||...| +..+.-+...++-+.|..+|+..+..- ..+ ..+|..+|.--..-|+...+..+=+++.+.-|
T Consensus 462 -f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~-------~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 462 -FPDSTLYKEKYLLFLIRINDEENARALFETSVERL-------EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred -CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH-------HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 3444443 445556667788888888888665541 222 45778888777778888777777777776654
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.94 E-value=0.002 Score=44.23 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
.+++.+...|...|++++|++.|++.++.. ...+...|+ ..++..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467788888999999999999999888651 100001133 56788999999999999999999999875
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0032 Score=42.48 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=58.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHH
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEA 486 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~ 486 (490)
...|.+.++++.|.+++++++..+| .++..|.....++.+.|++.+++...-......|+......+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3578899999999999999999999 89999999999999999988877666666677888877665543
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=96.94 E-value=0.074 Score=41.61 Aligned_cols=89 Identities=15% Similarity=0.003 Sum_probs=55.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
-+...|++++|..+|+-+.-.++. +...|..|..++-..+++++|...|......+.. |+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 344567777777777766655443 5556666666666677777777777666554332 34444455566667777777
Q ss_pred HHHHHHHHHhc
Q 011226 388 AVDCLEKAIDT 398 (490)
Q Consensus 388 A~~~~~~~~~~ 398 (490)
|...|+...+.
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 77777766653
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.79 E-value=0.37 Score=43.25 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++-.. +-++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445666667777777777766553 26777777778888888887776654321 123467777788888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
+.|+..+|..+...+ + +..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888877777776651 1 13456677777777777665433
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.73 E-value=0.33 Score=46.39 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 228 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
+..+...+...+.+...+.-|-++|..|-+ ...+++.+...++|++|..+-+...
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc
Confidence 344555555556666777777888877754 2245667777888888887766553
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.72 E-value=0.17 Score=48.21 Aligned_cols=219 Identities=11% Similarity=0.140 Sum_probs=103.9
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHH---------HHHHHhCCCCCCcchHHHHHHHHHhcCCCC--cHHHHHHHHHHCCCCC
Q 011226 123 HLTYGSLLNCYCKELMTEKAEAL---------LEKMKELNLGFSSMPFNSLMTLYAKTGHPE--KIPAIIQEMKASSIMP 191 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p 191 (490)
...+.+-+..|...|.+++|.++ |+.+.... .+...++..=.+|.+.++.. +...-++++++.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 33444555567777877777654 22222211 23334555556666655533 3333456677777777
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHH--ccCCCCH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS-----NLASIYVEAGLFEKAERALKELEN--RNAHRDL 264 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 264 (490)
+... +...++-.|++.+|-++|.+--.. .--...|+ -++.-|...|..++-..+.++-.+ .+++..
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP- 706 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKRSGHE---NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP- 706 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHHcCch---hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-
Confidence 7643 345566677788877777653211 01111111 122333334443333333222111 011101
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH-----H-HHHhCC---CCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 011226 265 SAYQFLITLYGQTGNLSEVYRIWR-----S-LRLAFP---NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR 335 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~-----~-~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 335 (490)
.+....+...|+.++|..+.- + +.+.+. ..+..+...+...+-+...+..|-++|..|-+.
T Consensus 707 ---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 707 ---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred ---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 122334445566555554321 1 111111 122334444444455556666667777665332
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
..+++.....+++.+|..+-+...+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCcc
Confidence 2455666667777777777666554
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.72 E-value=0.0049 Score=36.56 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR 453 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 453 (490)
.++..+...|...|++++|.++|+++++..| .|...|..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence 4678889999999999999999999999999 89998887764
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.36 Score=41.61 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=75.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhH--HHHHHHHHHH
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLT--YGSLLNCYCK 135 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~li~~~~~ 135 (490)
-..-.......+++.+|...|+....... -+......+..+|...|+.+.|..++..++....+... ...-|..+.+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 33344456667777777777777766542 23445556667777777777777777777662222111 1122333444
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCCCcHHHHHHHHHHC--CCCCCHhhHHHHHHHHHHcC
Q 011226 136 ELMTEKAEALLEKMKELNLGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS--SIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~ 207 (490)
.....+...+-.+.-.. | |...-..+...+...|+.+.|++.+-.+.+. |.. |...-..++..+...|
T Consensus 216 aa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444333333333322 3 4444455555666666666666655554433 222 3334444555444444
No 223
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.61 E-value=0.68 Score=44.03 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC--CChhhHHHH
Q 011226 263 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVM 340 (490)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 340 (490)
+..+|..-+.--...|+.+.+.-+|+...-.--. -...|-..+.-....|+.+.|..++....+-..+ |......+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3567888888888899999999988877532111 1123333444444458888888887776554333 222222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCCCCCcCCHHHH---
Q 011226 341 IGAYAKEGRLENAEELKERARRRGADPNAKTW-EIFSDYYLRNGDMKLAV---DCLEKAIDTGRGDGGKWVPSSETI--- 413 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~p~~~~~--- 413 (490)
+ .-..|+++.|..+++.+.+. . |+.... ..-+....+.|+.+.+. +++....... -+..+.
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--------~~~~i~~~l 442 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--------ENNGILEKL 442 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--------cCcchhHHH
Confidence 2 33467999999999999876 3 554332 22244456777877777 3333332221 222222
Q ss_pred -HHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 414 -RTFMR-HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 414 -~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
....+ .+.-.++.+.|..++.++.+..+ ++...|..+++.....+.
T Consensus 443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 443 YVKFARLRYKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCCc
Confidence 22222 23446889999999999999998 999999999999887774
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.60 E-value=0.039 Score=43.35 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----ccCCCCHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN-----RNAHRDLSAY 267 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 267 (490)
....++..+...|+++.|..+.+.+... .|.+...|..+|.+|...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455667777888888888888888886 677888888888888888888888888877643 4676765543
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.55 E-value=0.012 Score=40.37 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRD----GRVAAD-WTTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
++.+..+|...|++++|+..|++..+. |...++ ..++..+..+|...|++++|++.+++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555544444321 101111 233444444444445555554444443
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=96.48 E-value=0.046 Score=42.74 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=73.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
...-+...|++++|..+|.-+.-.++- +..-|..|..++-..+++++|+..|......+. -|+..+.....+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------~dp~p~f~agqC 114 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------NDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-------CCCCccchHHHH
Confidence 344456789999999999999876543 556667777788889999999999999887763 344446667889
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 011226 420 FEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~ 438 (490)
+...|+.+.|...|+.+.+
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999888
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.46 E-value=0.091 Score=48.34 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=54.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK----TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+...++.+..+|...|++++|+..|++.++. .|+.. +|..+..+|...|+.++|+..++++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5677888888999999999999999998874 67754 47888888999999999999999998863
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.45 E-value=0.067 Score=50.26 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=83.8
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYC 134 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 134 (490)
......+++.+-+.|-.+.|+++..+ + ..-.+...+.|+++.|.++.++.. +...|..|.....
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHH
Confidence 45566667777777777777766432 2 123556667777777777776664 5667777777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHH
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAER 214 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 214 (490)
++|+++-|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....| + ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---~---~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG---D---INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc---C---HHHHHHHHHHcCCHHHHHH
Confidence 78888877777766443 6666666777777766666666655544 1 4555556666677777666
Q ss_pred HHHHH
Q 011226 215 VIEEM 219 (490)
Q Consensus 215 ~~~~~ 219 (490)
++.+.
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66543
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.074 Score=47.72 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.++..+..++.+.+++..|+..-++.+..+. +|.....--..+|...|+++.|...|+++++..| .|-.+-+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-------~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~ 329 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDP-------NNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARA 329 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-------CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 3566677788888999999999999888862 6677888888889999999999999999999988 7777777
Q ss_pred HHHHHHHhcCC---CcHHHHHHHhhC
Q 011226 450 PLIRTYAAAGR---TSPVMLRRLKME 472 (490)
Q Consensus 450 ~l~~~~~~~g~---~~~~~~~~m~~~ 472 (490)
.|+.+-.+..+ ....++..|-..
T Consensus 330 el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 330 ELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77776665555 334566666443
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.31 E-value=0.11 Score=39.09 Aligned_cols=101 Identities=10% Similarity=0.094 Sum_probs=63.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 201 (490)
|..++..++.++++.|+++....+++..=. +..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345667777777777777777777755432 2111100 0000 1123346678888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA 242 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (490)
+|+..|++..|.++++...+.-.++.+..+|..|+.-....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 88888888888888888777654666677777777655443
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.30 E-value=0.096 Score=48.18 Aligned_cols=98 Identities=12% Similarity=-0.074 Sum_probs=69.6
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011226 298 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI--RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF 375 (490)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 375 (490)
+...++.+..+|...|++++|...|+...+..+.... .+|..+..+|...|+.++|+..+++..+.+ . ..|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHHHH
Confidence 3456788999999999999999999999887665221 358889999999999999999999999852 1 123211
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHhcC
Q 011226 376 SD--YYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 376 ~~--~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.. .+..-.+.++..++++...+.|
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhC
Confidence 11 1112223345666777777766
No 232
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.17 E-value=0.85 Score=40.35 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=12.7
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011226 378 YYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~ 396 (490)
.+.+.++++.|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456777777777776544
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.12 E-value=0.045 Score=46.39 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCCCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 011226 108 AAENYFVDLPETSKNHLTYGSLLNCYCKE-----LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (490)
...+.|..+.....|..+|-..+..+... +.++-.-..++.|.+.|+..|..+|+.|++.+-+
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 34555666654456667777777666543 5566666778889999999999999999887643
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.04 E-value=0.21 Score=38.15 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=39.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCC--CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNT--ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
....+.|++++|.+.|+.+....+.. ....-..++.+|.+.++++.|...++...+..+.....-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34455666666666666666554321 1123344555666666666666666666555544333444444444443
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.03 E-value=0.8 Score=38.82 Aligned_cols=182 Identities=16% Similarity=0.215 Sum_probs=87.2
Q ss_pred HHHcCCHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc----
Q 011226 239 YVEAGLFEKAERALKELENRNAH--RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---- 312 (490)
Q Consensus 239 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 312 (490)
-.+.|++++|.+.|+.+....+- -...+.-.++-++.+.++++.|+...++.....+.....-|...|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 34556666666666666543221 122334445555666666666666666666655544444444444444421
Q ss_pred ---CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011226 313 ---KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV 389 (490)
Q Consensus 313 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 389 (490)
.|...+...+..+. .++.-|=...-...|..-+..+... + ...=..+.+-|.+.|.+-.|.
T Consensus 124 ~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~-L---A~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA-L---AGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH-H---HHHHHHHHHHHHHhcChHHHH
Confidence 12222222222211 1111111111112222222222110 0 000013445677888888888
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.-++++++.-.. ..-....+-.+..+|...|-.++|.+.-+-+ ..+.
T Consensus 188 nR~~~v~e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl-~~N~ 234 (254)
T COG4105 188 NRFEEVLENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVL-GANY 234 (254)
T ss_pred HHHHHHHhcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHH-HhcC
Confidence 888888887410 1112345566677888888888887765543 3444
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.02 E-value=0.15 Score=37.84 Aligned_cols=95 Identities=20% Similarity=0.127 Sum_probs=62.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh
Q 011226 343 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 422 (490)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 422 (490)
++...|+++.|++.|.+.+..- +-....||.-..++--.|+.++|++-+++.++..... .+.--..|..-...|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~---trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ---TRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHH
Confidence 4566778888888887777642 2356677777777777788888888777777763110 00112334444455677
Q ss_pred cCChHHHHHHHHHHHHcCC
Q 011226 423 EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~ 441 (490)
.|+-+.|..-|+...++|.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 7888888888888777775
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=1.9 Score=42.83 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=120.3
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHH----HHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAI----HLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYG 127 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 127 (490)
....++..-+..+.+..-++-|+.+-+. .+. +..+... ..+-+.+.|++++|...|-+-.. ..|+
T Consensus 332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s----- 401 (933)
T KOG2114|consen 332 LIEKDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS----- 401 (933)
T ss_pred eeeccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----
Confidence 3455566677778888888888877543 332 3333333 34555578999999888876655 4333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
.+|.-|....++.+--..++.+.+.|. .+...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 345556666777777788888888887 677777889999999999888877776544 2221 112345677777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
-.++|..+-..... +...... .+-..+++++|++.++.+.
T Consensus 478 yl~~a~~LA~k~~~------he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 478 YLDEAELLATKFKK------HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred hHHHHHHHHHHhcc------CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 77777766554432 2333333 3445688999999888764
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.96 E-value=1.6 Score=41.82 Aligned_cols=181 Identities=13% Similarity=0.007 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH------HHHHHHHHHHHh----cCCh
Q 011226 211 GAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL------SAYQFLITLYGQ----TGNL 280 (490)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~ 280 (490)
-..-+|.-+... +||... .++...+=.|+-+.+++.+....+.+--..+ -.|...+..++. ..+.
T Consensus 175 ~G~G~f~L~lSl--LPp~~~---kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPKVL---KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHh--CCHHHH---HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 345577777776 666554 5778888889999999999887653211111 234444443333 4567
Q ss_pred hHHHHHHHHHHHhCCCCCchhH-HHHHHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGC---ATYDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
+.|.+++..+.+..| +...| ..-.+.+...|++++|.+.|+...... .......+-.+.-.+.-.+++++|.+.
T Consensus 250 ~~a~~lL~~~~~~yP--~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 250 EEAEELLEEMLKRYP--NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 889999999988664 44444 333456677999999999999754311 122334455566778889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHhcC
Q 011226 357 KERARRRGADPNAKTWEIFSDY-YLRNGDM-------KLAVDCLEKAIDTG 399 (490)
Q Consensus 357 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~~~ 399 (490)
|..+.+.. .-+...|..+..+ +...|+. ++|.++|.+.....
T Consensus 328 f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 328 FLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999742 2344455544443 3466777 88888888776553
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.93 E-value=0.28 Score=41.83 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
.|+.-+. +.+.|++..|...|...++..+. -....+-.|..++...|++++|...|..+.+...+ . .--+..+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--s--~KApdal 218 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--S--PKAPDAL 218 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC--C--CCChHHH
Confidence 4555444 34556678888888777765322 11233445677777788888888888777776521 0 1124666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..|..+..+.|+.++|..+|+++.+.-|
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 7777777788888888888888777665
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.88 E-value=0.96 Score=38.52 Aligned_cols=226 Identities=18% Similarity=0.104 Sum_probs=134.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011226 207 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NAHRDLSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
+....+...+...............+......+...+.+..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555553200012455566666677777777777776666542 122344455555566666666777777
Q ss_pred HHHHHHHhCCCCCchhHHHHHH-HHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 286 IWRSLRLAFPNTANISYLNMIQ-VLVNLKDLPGAEKCFKEWESGCA--TYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
.+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777665543332 112222222 56777777777777777644222 11233333344445667788888888888777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 363 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 363 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.........+..+...+...++++.|...+....... |+ ...+..+...+...+..+.+...+.+.....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4211135566667777777778888888888888775 44 44445555555566678888888888777665
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.21 Score=42.55 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC--CCHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH--RDLSAYQF 269 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 269 (490)
.|+.-+.. .+.|++..|...|...++. .|-+ ...+-.|..++...|++++|..+|..+.+.-.+ .-+..+-.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 4677788888888887775 3332 334556777788888888888888777664322 11345566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
|..+..+.|+.++|..+|+++.+..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 666777777888888888777776543
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.75 E-value=1.6 Score=40.17 Aligned_cols=407 Identities=13% Similarity=0.053 Sum_probs=212.6
Q ss_pred HHhccCCchHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHH--HHH
Q 011226 64 KLRDRKLYYPALKLSENMEKRGMNKTVS------DQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNC--YCK 135 (490)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~ 135 (490)
.+.+++++++|..+|.++-+.. ..++. .-+.++++|.. .+++.....+..+.+..|. ..|-.+..+ +-+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence 4567899999999999995543 22222 22345555543 5566666666666553342 233344333 346
Q ss_pred cCCHHHHHHHHHHHHhC--CCCCC------------cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC----CCCHhhHH
Q 011226 136 ELMTEKAEALLEKMKEL--NLGFS------------SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI----MPDSYTYN 197 (490)
Q Consensus 136 ~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~ 197 (490)
.+.+++|.+.+..-.+. +..|. -..=+..+..+...|.+.++..+++++...=+ .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78999999988877665 22221 11115667788899999999999998876533 36788888
Q ss_pred HHHHHHHHcCChh---------------HHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHH
Q 011226 198 VWMRALAAVNDIS---------------GAERVIEEMKRDG-----RVAADWTTFSNLASIYVEA--GLFEKAERALKEL 255 (490)
Q Consensus 198 ~l~~~~~~~~~~~---------------~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~ 255 (490)
.++-.+.++=-++ -+.-+..++.... .+.|.......++....-. ....--.++++..
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 8666665431111 1111111111100 0222222223333222211 1111222333333
Q ss_pred HHccCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCC----CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 256 ENRNAHRDLS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPN----TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 256 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
...-+.|+-. ....+...... +.+++..+-+.+....+. --..+|..++....+.++...|.+.+.-+....+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3333444421 12222222222 455555554444322111 1134678888888999999999999888776544
Q ss_pred CCChh-----hHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHh
Q 011226 331 TYDIR-----VTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSD---YYLRNGD-MKLAVDCLEKAID 397 (490)
Q Consensus 331 ~~~~~-----~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~-~~~A~~~~~~~~~ 397 (490)
..+.. +-..+-+..+. .-+...=+.+|+.....++. .......++. -+-+.|. -++|+++++.+++
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 32211 00112222221 12334456667776665443 1122223332 3556666 7789999988887
Q ss_pred cCCCCCCCCcCCHHHHHHHH--------HHHHhcC--ChHHHHHHHHHHH--HcCCCCCHHhHHHHHHH--HHhcCCCcH
Q 011226 398 TGRGDGGKWVPSSETIRTFM--------RHFEQEK--DVDGAEGFLEILK--KAVDDLGVEVFEPLIRT--YAAAGRTSP 463 (490)
Q Consensus 398 ~~~~~~~~~~p~~~~~~~l~--------~~~~~~g--~~~~a~~~~~~~~--~~~~~~~~~~~~~l~~~--~~~~g~~~~ 463 (490)
-.. -|...-+.+. .++.... +.-.-..+.++.- ...+ .+...-|.|.++ +...|++..
T Consensus 409 ft~-------yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i-~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 409 FTN-------YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI-SEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred hcc-------ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc-cHHHHHHHHHHHHHHHhcccHHH
Confidence 642 3332222111 1111111 2222233333321 1222 345555666554 677899888
Q ss_pred HHHHHHhhCCCCCCHHHHHHH
Q 011226 464 VMLRRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 464 ~~~~~m~~~~~~p~~~~~~~l 484 (490)
+....+--..+.|++.+++++
T Consensus 481 c~~ys~WL~~iaPS~~~~RLl 501 (549)
T PF07079_consen 481 CYLYSSWLTKIAPSPQAYRLL 501 (549)
T ss_pred HHHHHHHHHHhCCcHHHHHHH
Confidence 888888888899998888765
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=1.3 Score=38.37 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=84.2
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445667777777777776665554 445556677777777777777777777654311111112122233344444444
Q ss_pred HHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKA--VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+...+-.+.-.. | |...-..+...+...|+.+.|.+.+=.+++. +. .|...-..|+..+.-.|.
T Consensus 221 ~~~~l~~~~aad---------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD---------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 444443333332 4 5666667777777778888777766555553 33 566777777777777775
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.59 E-value=0.93 Score=43.45 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT-----TFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSA 266 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 266 (490)
+..++....=.||-+.+++.+.+..+.+++.-... .|...+..++. ..+.+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34566666778999999999998877542222211 23344443433 45678899999999875 366655
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHHhC---CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 011226 267 YQFL-ITLYGQTGNLSEVYRIWRSLRLAF---PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 342 (490)
Q Consensus 267 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (490)
|... .+.+...|++++|++.|+...... .+.....+--+...+.-..++++|.+.|..+.+..- .+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 5443 456677899999999999765311 122334456677788889999999999999987533 24455544433
Q ss_pred -HHHhcCCh-------hHHHHHHHHHHH
Q 011226 343 -AYAKEGRL-------ENAEELKERARR 362 (490)
Q Consensus 343 -~~~~~~~~-------~~a~~~~~~~~~ 362 (490)
++...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44557777 788888887754
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=0.91 Score=35.22 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
...++..+...+.......+++.+...+. .+...++.++..|++.+. ....+.+.. ..+......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34566666666777777777777766654 466677777777776532 333333331 1233344456777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE-KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
.+.++++.-++.++-. +...+..+... ++++.|.+++++ . .++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~---------------~~~Al~~~l~~~~d~~~a~~~~~~-----~-~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------------FKDAIVTLIEHLGNYEKAIEYFVK-----Q-NNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC---------------HHHHHHHHHHcccCHHHHHHHHHh-----C-CCHHHHHHHHHHHHc
Confidence 7777777777766421 12223333333 677777777765 1 456677777766654
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.44 E-value=1.2 Score=36.60 Aligned_cols=85 Identities=12% Similarity=0.021 Sum_probs=50.3
Q ss_pred hhCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKN-HLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 180 (490)
..|-+.-|.-=|.+.....|+ +.+||-|.--+...|+++.|.+.|+...+.++.-+-...|--|.. .--|++.-|.+-
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d 155 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDD 155 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHH
Confidence 335555555555555554454 457777777777888888888888888876542222222222222 235677777766
Q ss_pred HHHHHHC
Q 011226 181 IQEMKAS 187 (490)
Q Consensus 181 ~~~~~~~ 187 (490)
+...-+.
T Consensus 156 ~~~fYQ~ 162 (297)
T COG4785 156 LLAFYQD 162 (297)
T ss_pred HHHHHhc
Confidence 6555444
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.38 E-value=1.5 Score=37.26 Aligned_cols=178 Identities=12% Similarity=0.091 Sum_probs=108.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 276 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (490)
+..-.+.|++++|.+.|+.+... .+-+ ..+.-.++.++.+.++++.|...+++.....+......|...|.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 33456889999999999999986 3333 445556778888999999999999998876554444456666665553
Q ss_pred c-------CChh---HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 277 T-------GNLS---EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 277 ~-------~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
. .|.. .|..-|+++++.-| ++. | ...|..-...+...- ...=..+.+.|.+
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryP--nS~-Y------------a~dA~~~i~~~~d~L----A~~Em~IaryY~k 179 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYP--NSR-Y------------APDAKARIVKLNDAL----AGHEMAIARYYLK 179 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCC--CCc-c------------hhhHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2 2233 33444444444433 221 1 112222222211100 0011346677888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-.-+....
T Consensus 180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 89999999999998886 22222 344556678888888888877765555443
No 248
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.37 E-value=1.5 Score=37.29 Aligned_cols=188 Identities=13% Similarity=0.163 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH---ccCC--CCHHHHHHHHHHHHhcCC
Q 011226 207 NDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKAERALKELEN---RNAH--RDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~ 279 (490)
.++++|+.-|++..+..+..-.+ .+...++..+.+.+++++..+.+.++.. +.+. -+..+.|.+++.-..+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35566666666665532111111 2233455666666666666666655532 1111 123344555554444444
Q ss_pred hhHHHHHHHHHHH----h-CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----------CChhhHHHHHHH
Q 011226 280 LSEVYRIWRSLRL----A-FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----------YDIRVTNVMIGA 343 (490)
Q Consensus 280 ~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~ 343 (490)
.+-..++++.-.+ . +-..=-.|-..+...|...+++.+..++++++..+... .=..+|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 4433333332111 0 00000112234556666666666666666666432211 013455666667
Q ss_pred HHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARR-RGADPNAKTWEIFSDYY-----LRNGDMKLAVDCLEKA 395 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 395 (490)
|..+.+-..-..++++... ....|.+.... +|+-| .+.|++++|-.-|-++
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 7777776677777776654 22234443332 33333 4566676665443333
No 249
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.37 E-value=0.48 Score=44.69 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.4
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
+...|..|.....+.|+++-|++.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333444444444444444444444443
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.3 Score=44.06 Aligned_cols=61 Identities=5% Similarity=-0.007 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
.++.+.-++.+.+++..|++..+..+.. .+.|....-.-..++...|+++.|...|+.+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444555666666666666666666665 455555555555666666666666666666655
No 251
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=1.1 Score=35.40 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=81.0
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHH---
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTV-SDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSL--- 129 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l--- 129 (490)
+...|...++ +.+.+..++|+.-|..+.+.|...-+ -............|+...|...|+++....+.+....-+
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3444444443 56778888999999988887754222 122233445567788888888888887733333333222
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 130 --LNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 130 --i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
...+...|.++......+-+...+-+.....-..|.-+-.+.|++..|.++|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2234566777777777666655444333344455666666777777777777776654
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.31 E-value=0.85 Score=34.10 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
+...+..+...|+-+.-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556666666666666666654 2334556666666666666666666666666666654
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.88 Score=39.98 Aligned_cols=115 Identities=17% Similarity=0.011 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc--hhH--HHHHHHHHhcCChhh
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISY--LNMIQVLVNLKDLPG 317 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~--~~l~~~~~~~~~~~~ 317 (490)
.|+..+|-..++++.+. .+.|...+...-.+|.-.|+.+.-...++++.-. -.+|. .+| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555542 2345555555555555555555555555554322 01122 122 122223344555555
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 318 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
|++.-++..+.+.. |.....++...+-..|+..++.+...+
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555444332 444444445555555555555555443
No 254
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.16 E-value=3.6 Score=40.48 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
-+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-+++-+... ++.-|.
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------------sPIGy~ 748 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------------SPIGYL 748 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------------CCCCch
Confidence 344555666777788888888776654 4677888888888888888887666654432 234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.+..+|.+.|+.++|.+.+-+... +.-...+|.+.|+..+|.
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAa 790 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAA 790 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHH
Confidence 677888888888888887755321 114666677777755543
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.16 E-value=1 Score=35.31 Aligned_cols=52 Identities=15% Similarity=-0.073 Sum_probs=29.6
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHH-HHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTY-GSLLNCYCKELMTEKAEALLEKMKELN 153 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~ 153 (490)
+.++.+++..+++.+.-..|..... ..-...+...|+|.+|..+|+++.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 4566667776666666543443222 112233556777777777777766543
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=1.1 Score=34.65 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
++..+.+.+.......+++.+...+. .+...++.++..|++.. ..+..+.+.. ..+......++..|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 44444444555555555555544432 34445555555555432 2222222221 1122333344555555555
Q ss_pred hhhHHHHHHH
Q 011226 315 LPGAEKCFKE 324 (490)
Q Consensus 315 ~~~a~~~~~~ 324 (490)
++++..++..
T Consensus 85 ~~~~~~l~~k 94 (140)
T smart00299 85 YEEAVELYKK 94 (140)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.15 E-value=0.74 Score=34.31 Aligned_cols=91 Identities=19% Similarity=0.094 Sum_probs=56.2
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHH---HHHHHHHHHHhcC
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS---AYQFLITLYGQTG 278 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 278 (490)
+....|+++.|++.|.+.+.. .|.....||.-..++.-.|+.++|++-+++..+..-..+.. .|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455677777777777777776 66677777777777777777777777777665532212222 2222233455566
Q ss_pred ChhHHHHHHHHHHHhC
Q 011226 279 NLSEVYRIWRSLRLAF 294 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~ 294 (490)
+.+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666555444
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.14 E-value=2.9 Score=39.22 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
..+..++-+.|+.++|.+.++++.+..+. .+..+...|+.++...+.+.++..++.+--+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44566666778888888888777654332 2334666777778888888888777777543
No 259
>PRK11906 transcriptional regulator; Provisional
Probab=95.10 E-value=2.9 Score=39.00 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 430 (490)
+|.++-++..+.+.. |......+..+....++++.|..+|++....+ || ..+|......+.-.|+.++|.
T Consensus 322 ~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~ 392 (458)
T PRK11906 322 KALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444544322 44444444444444555555555555555554 44 344444444445555555565
Q ss_pred HHHHHHHHcCC
Q 011226 431 GFLEILKKAVD 441 (490)
Q Consensus 431 ~~~~~~~~~~~ 441 (490)
+.+++..++.|
T Consensus 393 ~~i~~alrLsP 403 (458)
T PRK11906 393 ICIDKSLQLEP 403 (458)
T ss_pred HHHHHHhccCc
Confidence 55555555554
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.04 E-value=0.11 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.144 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS 233 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (490)
+..+..+|...|++++|+++|+++++. .|.|...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~ 39 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHH
Confidence 344455555555555555555555554 344444433
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=1.4 Score=34.82 Aligned_cols=124 Identities=14% Similarity=0.076 Sum_probs=54.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHH-HHHHH--HHHHHhcCCh
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS-AYQFL--ITLYGQTGNL 280 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~ 280 (490)
.+.+..++|+.-|..+.+.|.-..-............+.|+...|...|+++-.....|-.. -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34555666666666666654111111122223334455566666666666665433333221 00011 1123445555
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
++.....+.+-..+-..-...-..|.-+-.+.|++.+|...|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555444432221111111123344444555666666666655544
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.98 E-value=0.55 Score=41.64 Aligned_cols=224 Identities=11% Similarity=0.007 Sum_probs=116.0
Q ss_pred ccCCchHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhhCCHHHHHHHH----hhcCC---CCCCHhHHHHHHHHHHHcC
Q 011226 67 DRKLYYPALKLSENMEKRG--MNKTVSDQAIHLDLVAKVQGIDAAENYF----VDLPE---TSKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~---~~~~~~~~~~li~~~~~~~ 137 (490)
.+.+.++|+..+.....+- ......++..+..+.++.|.+++++..- +...+ ...--..|-.+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655543221 1122345566667777777776654432 11111 1111234555555655555
Q ss_pred CHHHHHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-----CCCHhhHHHHHHHHHHcCC
Q 011226 138 MTEKAEALLEKMKEL-NLGFS---SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI-----MPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~ 208 (490)
++.+++.+-..-... |..|. -....++..+..-.+.++++++.|+...+..- .....+|..|...|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 566665554443332 11111 12233445555666667777777776654311 1123467777778888888
Q ss_pred hhHHHHHHHHHHHCC-CCC-CCHHH-H-----HHHHHHHHHcCCHHHHHHHHHHHHHc----cCCC-CHHHHHHHHHHHH
Q 011226 209 ISGAERVIEEMKRDG-RVA-ADWTT-F-----SNLASIYVEAGLFEKAERALKELENR----NAHR-DLSAYQFLITLYG 275 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~-~~~-~~~~~-~-----~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 275 (490)
+++|.-+.....+.- ... .|+.. | -.+.-++-..|....|.+.-++..+. |-.+ -......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 887776655543310 011 12211 2 22344555667777777776665432 2211 1233445667777
Q ss_pred hcCChhHHHHHHHHH
Q 011226 276 QTGNLSEVYRIWRSL 290 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~ 290 (490)
..|+.+.|+.-|++.
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888887777654
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.97 E-value=1.2 Score=34.09 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=36.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 237 SIYVEAGLFEKAERALKELENRNAH--RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 237 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
....+.|++++|.+.|+.+..+-+. -....--.++.+|.+.+++++|...++..++.++.....-|...+.+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3344455566666555555543211 1123333455556666666666666666655555433344444444443
No 264
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.90 E-value=3.8 Score=39.31 Aligned_cols=351 Identities=10% Similarity=0.009 Sum_probs=186.4
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSD-QAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLN 131 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~ 131 (490)
+...+..++..--...+.+.+..++..+...- |-... |......=.+.|..+.+.++|++... .+.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33444444554444444556666677665443 44443 33444455577889999999988877 5566667766665
Q ss_pred HHH-HcCCHHHHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHH---HH
Q 011226 132 CYC-KELMTEKAEALLEKMKEL-NLG-FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL---AA 205 (490)
Q Consensus 132 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~ 205 (490)
.+. ..|+.+...+.|+..... |.. .+...|...|..-..++++.....+|+..++.- ...|+....-| .+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHh
Confidence 444 357777778888877653 211 345667777877777888888889988887741 22222222222 11
Q ss_pred c------CChhHHHHHHHHHHHC---CCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 206 V------NDISGAERVIEEMKRD---GRVAADWTTFSNLASIYVE-AGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 206 ~------~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
. ...+++.++-.....+ +...+.......-+.--.. .+..+++.....+... ..-.++-
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~ 266 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQ 266 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHH
Confidence 1 1222222222222110 0000011111111110000 1111111111111110 0011122
Q ss_pred hcCChhHHHHHHHHHHHh---CCCC----CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 011226 276 QTGNLSEVYRIWRSLRLA---FPNT----ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 348 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (490)
......+....|+.-... .++| +..+|..-+..-...|+.+.+.-+|+...--.-. =...|-..+......|
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~ 345 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSG 345 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcC
Confidence 222223333333333221 1222 3346777788888899999999999887543222 2245555566666669
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH-HHHHHHHHHHHhcCCh
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDY-YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDV 426 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 426 (490)
+.+-|..++....+--++ +......+-.. .-..|++..|..+++.+...- |+. ..-..-+....+.|+.
T Consensus 346 ~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred chhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcch
Confidence 999999888877764333 33222222222 345689999999999999885 553 2333344556678888
Q ss_pred HHHHH
Q 011226 427 DGAEG 431 (490)
Q Consensus 427 ~~a~~ 431 (490)
+.+..
T Consensus 417 ~~~~~ 421 (577)
T KOG1258|consen 417 EDANY 421 (577)
T ss_pred hhhhH
Confidence 88873
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=2.1 Score=35.96 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 011226 161 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV 240 (490)
Q Consensus 161 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 240 (490)
|.....+|-..+++++|...+.+..+. ..-+...|. ....++.|.-+.+++.+ .+.-...|+.-...|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~k---lsEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSK---LSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 444445555666666666666555421 111221111 11223444455555544 2333444555566666
Q ss_pred HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-----CCCchhHHHHHHHHHhcCCh
Q 011226 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP-----NTANISYLNMIQVLVNLKDL 315 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~ 315 (490)
.+|.++-|-..+++..+. ....++++|+++|.+....-. +.-...+..+-..+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666665555554331 122334444444443322100 00111233344445555555
Q ss_pred hhHHHHHHHHH----hcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 011226 316 PGAEKCFKEWE----SGCATYD-IRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 316 ~~a~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
++|-..+..-. +..-.++ -..|-..|-.+....++..|...++.--..+ -.-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 55554444321 1111111 1234445555666667777777777633211 112445666666665 3456555
Q ss_pred HHHH
Q 011226 388 AVDC 391 (490)
Q Consensus 388 A~~~ 391 (490)
+..+
T Consensus 246 ~~kv 249 (308)
T KOG1585|consen 246 IKKV 249 (308)
T ss_pred HHHH
Confidence 5444
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.76 E-value=2.8 Score=37.12 Aligned_cols=227 Identities=15% Similarity=0.101 Sum_probs=119.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH-------HHHHHHcC-CHHHHHHHHHHHHHc--------cCCCC----
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWTTFSNL-------ASIYVEAG-LFEKAERALKELENR--------NAHRD---- 263 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~---- 263 (490)
.+.|+.+.|..++.+..... ...++.....+ .....+.+ +++.|..++++..+- ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL-NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45677777777777766542 12222222222 22233345 777777666655332 11222
Q ss_pred -HHHHHHHHHHHHhcCChh---HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 011226 264 -LSAYQFLITLYGQTGNLS---EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV 339 (490)
Q Consensus 264 -~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (490)
..+...++.+|...+..+ +|..+++.+....+. ...++..-+..+.+.++.+.+.+.+..|...-.. ....+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 245667778887777654 456666666555443 2445555667777788899999999998876332 2234444
Q ss_pred HHHHH---HhcCChhHHHHHHHHHHHcCCCCCHHHH-HH-HHH---HHHhcCC------HHHHHHHHHHHHhcCCCCCCC
Q 011226 340 MIGAY---AKEGRLENAEELKERARRRGADPNAKTW-EI-FSD---YYLRNGD------MKLAVDCLEKAIDTGRGDGGK 405 (490)
Q Consensus 340 li~~~---~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~-l~~---~~~~~g~------~~~A~~~~~~~~~~~~~~~~~ 405 (490)
++..+ .. .....+...+..+....+.|....| .. ++. ...+.++ .+...++++...+....|
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~--- 236 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ--- 236 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC---
Confidence 44444 33 3345666666666654455544311 11 111 1112111 444445555433332211
Q ss_pred CcCC-HHHHHHH----HHHHHhcCChHHHHHHHHHHH
Q 011226 406 WVPS-SETIRTF----MRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 406 ~~p~-~~~~~~l----~~~~~~~g~~~~a~~~~~~~~ 437 (490)
+.+. .....++ +..+.+.++++.|...|+-..
T Consensus 237 ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 237 LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 1122 1222233 334567899999999998654
No 267
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.58 E-value=3.1 Score=36.96 Aligned_cols=129 Identities=9% Similarity=0.229 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--cCC----hhHHHHHHHHHHHhCC---CCCchhHHHHHHHHHhcCC--
Q 011226 246 EKAERALKELENRNAHRDLSAYQFLITLYGQ--TGN----LSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKD-- 314 (490)
Q Consensus 246 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 314 (490)
++...+++.|.+.|+..+..+|-+....... ..+ ...|..+|+.|++.++ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777777776555543222222 222 3567778888887765 3344555555433 2333
Q ss_pred --hhhHHHHHHHHHhcCCCCChh--hHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011226 315 --LPGAEKCFKEWESGCATYDIR--VTNVMIGAYAKEGR--LENAEELKERARRRGADPNAKTWEIFS 376 (490)
Q Consensus 315 --~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~ 376 (490)
.+.++.+|+.+.+.|...+-. ....++...-.... ...+.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 245566777777766544322 22222222211111 446788888888888887777665443
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.47 E-value=4.3 Score=38.11 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=70.1
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
.....++.+++++..+.+-.. .-...... ..|. .++.+......+-..+-..+..++.+.|+.++|.+.
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~ 281 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKM 281 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHH
Confidence 455788888888876654210 00000111 1111 112222333333344445677888899999999999
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 357 KERARRRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 357 ~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+++|.+.... -+......++.++...+.+.++..++.+.-+..
T Consensus 282 ~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 282 FRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred HHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 9999874322 133466789999999999999999999976543
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.37 E-value=7.7 Score=40.58 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=61.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK--TWEIFSDYYLR 381 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~ 381 (490)
+...-+.....+++|--.|+..-+. ..-+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHH
Confidence 3334445566777777666654221 23466777888888888877766531 1222 22456667777
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
.+++-+|-++..+.... | .-.+..+++...+++|.++...
T Consensus 1012 ~~kh~eAa~il~e~~sd---------~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD---------P-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cccchhHHHHHHHHhcC---------H-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 88888888777776544 2 1222345555566666655544
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.24 E-value=1.7 Score=32.56 Aligned_cols=136 Identities=12% Similarity=0.183 Sum_probs=81.9
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchh---HHHHHHHHHhcCChh
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS---YLNMIQVLVNLKDLP 316 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 316 (490)
.-.|..++..+++.+...+ .+..-+|-+|--....-+-+-..++++.+ |.-.|... ...++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc--
Confidence 3457777777887777663 23444555554444444444555555444 22223322 2344555544432
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
+.......+..+...|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++-+++.++-
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3345566778889999999999999998763 35788888899999999999999999999999
Q ss_pred hcCC
Q 011226 397 DTGR 400 (490)
Q Consensus 397 ~~~~ 400 (490)
+.|.
T Consensus 148 ekG~ 151 (161)
T PF09205_consen 148 EKGL 151 (161)
T ss_dssp HTT-
T ss_pred Hhch
Confidence 9983
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.23 E-value=1.6 Score=35.39 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=66.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHH
Q 011226 344 YAKEGRLENAEELKERARRRGADPNA-----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM 417 (490)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~ 417 (490)
+...|++++|..-|.+.++. +++.. ..|..-..++.+.+.++.|++-..+.++.+ |+ ......-.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~kAl~RRA 175 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYEKALERRA 175 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhHHHHHHHH
Confidence 56678888888888888875 22222 233344456778888888888888888887 54 33334445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
.+|.+...+++|++-|+++.+..| ....+-..
T Consensus 176 eayek~ek~eealeDyKki~E~dP-s~~ear~~ 207 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDP-SRREAREA 207 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 678888889999999999888887 33344433
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.21 E-value=3 Score=35.29 Aligned_cols=204 Identities=19% Similarity=0.128 Sum_probs=118.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+......+...+++..+...+...............+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3444555556666666666666666655410034445555556666666666666666666665533322 111222222
Q ss_pred -HHHhcCChhHHHHHHHHHHHhCCC--CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 273 -LYGQTGNLSEVYRIWRSLRLAFPN--TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 273 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
.+...|+++.+...+.......+. .....+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 566677777777777766442210 11222333333355667777777777777665333235566677777777788
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 350 LENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
++.|...+...... .|+ ...+......+...+..+.+...+.+.....
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888887774 233 3344444444446677888888888887776
No 273
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.19 E-value=0.57 Score=40.05 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCcchHHHHHHHHHhc-----CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH
Q 011226 156 FSSMPFNSLMTLYAKT-----GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT 230 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (490)
.|-.+|...+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+ |.+.|..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-----------------gkfiP~n- 126 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-----------------GKFIPQN- 126 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-----------------cccccHH-
Confidence 4455555555554432 3334444445555666666666666666554422 1122211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
.+....-.|-+ +-+=+++++++|...|+.||..+-..+++++.+.+-.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111111111 2234678888888888888888888888888877653
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.07 E-value=2.7 Score=34.09 Aligned_cols=91 Identities=12% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 340 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEI-----FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 340 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
+...+...|++++|...++..... |....+.. +.+.....|.+++|+..++.....+ -......
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--------w~~~~~e 163 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--------WAAIVAE 163 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--------HHHHHHH
Confidence 456677888999998888877753 33334433 3456678889999999888776665 3344455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.-.+.+...|+-++|..-|++.++.+.
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 567788889999999999998888763
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.02 E-value=4.3 Score=36.33 Aligned_cols=127 Identities=17% Similarity=0.033 Sum_probs=56.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhC-----CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh----cCCCC-C----hh
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAF-----PNTANISYLNMIQVLVNLKDLPGAEKCFKEWES----GCATY-D----IR 335 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~----~~ 335 (490)
+..++...+.++++++.|+...+-- ......++..|...|....|+++|.-+.....+ .++.. + ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3444444555555555555443211 111123455555555566666655544433221 11110 0 01
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRRGA-DPNAKT----WEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
..-.+.-++...|++-+|.+.-++..+..+ .-|..+ ...+.+.|-..|+.+.|+.-|++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 112233445556666666666655543211 112222 2334445556666666666665543
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.00 E-value=0.63 Score=40.42 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH--HH-----HHhhCCCCCCHHHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM--LR-----RLKMEKVEVSEASKK 482 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~--~~-----~m~~~~~~p~~~~~~ 482 (490)
..++..++..+...|+.+.+.+.++++....| -+...|..++.+|.+.|+...++ ++ .+++.|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 44677888899999999999999999999999 89999999999999999955443 22 455679999998887
Q ss_pred HHHHh
Q 011226 483 LLEAI 487 (490)
Q Consensus 483 ~l~~~ 487 (490)
+..++
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77654
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.96 E-value=0.93 Score=39.41 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----ccCCCCHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN-----RNAHRDLSAYQ 268 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~ 268 (490)
.++..++..+...|+.+.+...++++... .+.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 45666777888888888888888888887 677888888888888888888888888887755 46666666555
Q ss_pred HHHHH
Q 011226 269 FLITL 273 (490)
Q Consensus 269 ~l~~~ 273 (490)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 54444
No 278
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.88 E-value=4.5 Score=36.02 Aligned_cols=22 Identities=14% Similarity=0.233 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhCCCCCchhHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYL 303 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~ 303 (490)
.+.++++.+.+.++++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4455555555555555444443
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.84 E-value=5.3 Score=36.76 Aligned_cols=66 Identities=23% Similarity=0.143 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 227 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR---DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
....+|..++..+.+.|.++.|...+..+...+... .......-+...-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445567778888888888888888888877643211 233444445666777888888888877766
No 280
>PRK11906 transcriptional regulator; Provisional
Probab=93.81 E-value=3.7 Score=38.33 Aligned_cols=126 Identities=7% Similarity=-0.032 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHH
Q 011226 350 LENAEELKERARR-RGADPNA-KTWEIFSDYYL---------RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 418 (490)
Q Consensus 350 ~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 418 (490)
.+.|..+|.+... ..+.|+. ..|..+..++. ......+|.++.++.++.+. .|+.....+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-------~Da~a~~~~g~ 346 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-------VDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHH
Confidence 4567888888872 2234443 33333333221 12345678889999999872 56888888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHH
Q 011226 419 HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKL 483 (490)
Q Consensus 419 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~ 483 (490)
+..-.++++.|...|+++..++| ....+|........-.|+..+++...-++..+.|......+
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 88888999999999999999999 88899998988899999988888777777777777654443
No 281
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.77 E-value=0.09 Score=28.93 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=26.1
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHH
Q 011226 433 LEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV 464 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 464 (490)
|+++++..| .|+.+|+.|...|...|+..++
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhh
Confidence 677888888 8999999999999999986554
No 282
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=8.7 Score=38.57 Aligned_cols=76 Identities=11% Similarity=0.095 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++..+.+..+.+.++.+.+..-+ -++..|..++..+.+.+.++...+...++++.=...+...-..+++.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~----------~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~ 780 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK----------EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQI 780 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc----------cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 45556667777777776655422 35678888888888888766666555554442111222223446666
Q ss_pred HHhcCC
Q 011226 455 YAAAGR 460 (490)
Q Consensus 455 ~~~~g~ 460 (490)
+++.+.
T Consensus 781 Lakn~~ 786 (933)
T KOG2114|consen 781 LAKNGT 786 (933)
T ss_pred HhcCCc
Confidence 666665
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=3.9 Score=34.49 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=93.3
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKT 171 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 171 (490)
.|.....+|....++++|...+.+..+...+...+-.. ..-++.|.-+.+++.... --+..|+-....|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA------AKayEqaamLake~~kls--Evvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHh
Confidence 34444555666666777666665554311111111111 122344444444444421 1123445555666777
Q ss_pred CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 172 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
|.++.|-..+++.-+. ...-+++.|+++|++.... ++..--...+....+.+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 7776666665544321 1222344444444443321 1011122234444555666666666
Q ss_pred HHHHHHHHHHccC----CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHhCC---CCCchhHHHHHHHHHhcCChhhHH
Q 011226 248 AERALKELENRNA----HRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKDLPGAE 319 (490)
Q Consensus 248 A~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~ 319 (490)
|-..|.+-..... -++. ..|...|-.|.-..++..|...++.-.+.+- .-+..+...|+.+| ..||.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 6555544321100 0111 2233444455555677777777766332211 11334555555555 345666555
Q ss_pred HHH
Q 011226 320 KCF 322 (490)
Q Consensus 320 ~~~ 322 (490)
+++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 544
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.58 E-value=1.9 Score=30.65 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+..+-++.+.... +.|++.+..+.+++|.+.+++..|.++|+-++.+-. +....|..+++-+
T Consensus 28 e~rrglN~l~~~D------lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYD------LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSS------B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccc------cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHHHH
Confidence 4555666666666 679999999999999999999999999998876543 3333676666543
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.52 E-value=6.1 Score=36.39 Aligned_cols=125 Identities=8% Similarity=0.002 Sum_probs=72.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-----
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG----- 404 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 404 (490)
...+|..++..+.+.|.++.|...+..+...+... .+......+..+-..|+..+|+..+++..........
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44566667777777777777777777766533111 2233334455556667777777777666662111000
Q ss_pred --------------------C--CcCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 405 --------------------K--WVPSSETIRTFMRHFEQE------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 405 --------------------~--~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
. ...-...+..+..-+... +..+++...|+++.+..+ .....|..+...+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP-SWEKAWHSWALFND 303 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHH
Confidence 0 000122333344444444 778888899999988877 66667777777765
Q ss_pred hc
Q 011226 457 AA 458 (490)
Q Consensus 457 ~~ 458 (490)
+.
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 44
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.49 E-value=2.6 Score=34.24 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4466677777777777777777777766433322 23445566666777777777766666544
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.30 E-value=9.2 Score=37.79 Aligned_cols=147 Identities=16% Similarity=0.036 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH-------ccCCCCHHHHHHHHHHHHhcC--
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASI-YVEAGLFEKAERALKELEN-------RNAHRDLSAYQFLITLYGQTG-- 278 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 278 (490)
...+.++++...+.|...+-...-.....+ +....+.+.|+.+|+.+.. .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 345666666666654222222211122222 3344566666666666654 33 1223444445554432
Q ss_pred ---ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cC
Q 011226 279 ---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN---LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EG 348 (490)
Q Consensus 279 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 348 (490)
+.+.|..++...-..|. |+...+ +...+.. ..+...|.++|......|.. ..+-.+..+|.. ..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 44556666666555443 222222 2222221 13455666666666665542 122222222221 23
Q ss_pred ChhHHHHHHHHHHHcC
Q 011226 349 RLENAEELKERARRRG 364 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~ 364 (490)
+.+.|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 5566666666666655
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.29 E-value=3.4 Score=32.86 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=55.7
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC
Q 011226 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 260 (490)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 260 (490)
++.+.+.+++|+...+..+++.+.+.|++..... +...+ +-+|.......+-.+ .+....+.++--+|.++-
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~-Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYH-VIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhc-ccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence 3444445555666666666666666665443322 22223 333333222221111 112222333333332210
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 261 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 261 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
...+..+++.+...|++-+|+++.+.... .+......++++..+.+|...-..+++-...
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01244455555566666666655554311 1222233455555555555544444444433
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.28 E-value=3.3 Score=32.55 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=24.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIF-SDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..++.+++..++..+.-. .|.......+ ...+...|++.+|+.+|+++.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344555555555555542 3333222111 123445555556666555554443
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.25 E-value=0.86 Score=31.88 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++.+-++.+.... ..|++.+..+.+++|.+.+++..|.++|+-++..-. .+...|..+++-
T Consensus 25 e~rr~mN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lqe 85 (103)
T cd00923 25 ELRRGLNNLFGYD------LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHHH
Confidence 5566667777666 679999999999999999999999999998885433 355577766654
No 291
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.16 E-value=10 Score=37.98 Aligned_cols=82 Identities=12% Similarity=-0.006 Sum_probs=50.3
Q ss_pred CccHHHHHHHHHHhcCC------------CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhh
Q 011226 36 DVSVRQQLNQFLKSKKR------------VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKV 103 (490)
Q Consensus 36 ~~~~~~~l~~~~~~~~~------------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (490)
.+.....+..+++.... ++......+|-.+.+.|++++|.++.......- ......+...+..+...
T Consensus 80 ~p~~~~~V~afv~~~~~~~~~~~~~~l~~~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 80 VPSTYNKVRAFVNVRLKRPGAWTDSGLEIVNGDPIWALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASS 158 (613)
T ss_dssp SS-HHHHHHHHHHCTTBESSCBSSTT--EETTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTT
T ss_pred CCCcHHHHHHHHHHHhcccCCCcccccccCCCCccHHHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhC
Confidence 44556666666665442 356667788888999999999999986554332 34455666777777654
Q ss_pred CC-------HHHHHHHHhhcCC
Q 011226 104 QG-------IDAAENYFVDLPE 118 (490)
Q Consensus 104 g~-------~~~a~~~~~~~~~ 118 (490)
.+ -+....-|++...
T Consensus 159 ~~~~l~~~~~~~l~~ey~~~~r 180 (613)
T PF04097_consen 159 PDRRLPPELRDKLKLEYNQRIR 180 (613)
T ss_dssp TSS---TCCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 22 2345555555544
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.14 E-value=0.36 Score=26.23 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
..+..+...+...|++++|.+.+++.++..|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4677888999999999999999999999886
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.00 E-value=0.0054 Score=48.04 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=83.3
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCH
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMT 139 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 139 (490)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-----cCHHHHHHHHHhcchH
Confidence 35667777888999999999998776566788889999999999888888888874433 2234567777777888
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++|.-++.++.... ..+..+...++++.|.+.+.+. ++...|..+++.+...++
T Consensus 87 ~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 87 EEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 88887776643321 1111133445666666433321 356667777776655543
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.97 E-value=0.35 Score=26.36 Aligned_cols=31 Identities=13% Similarity=0.024 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+|..+..++...|++++|+..|+++++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 5788899999999999999999999999886
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.91 E-value=0.26 Score=27.48 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999654
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.71 E-value=0.17 Score=27.80 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 217 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
++.++. .|.+..+|+.+...|...|++++|.
T Consensus 3 ~kAie~--~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIEL--NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 4556666666666666666666654
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.65 E-value=0.98 Score=31.61 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 236 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 236 (490)
++.+-++.+....+.|++....+.+++|.+.+|+..|+++|+.+... +..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 44555566666667788888888888888888888888888877754 333444555544
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.37 E-value=5.6 Score=32.92 Aligned_cols=166 Identities=13% Similarity=0.082 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh--hhHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI--RVTNVMI 341 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 341 (490)
+..||.+.-.+...|+++.|.+.|+...+..+.-+-...|. .-++.--|++.-|.+-+...-..++. |+ ..|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 45677777777888888888888888877554322212222 22233467888887777666555443 22 2222222
Q ss_pred HHHHhcCChhHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC-CcCCHHHHHHHHHH
Q 011226 342 GAYAKEGRLENAEELK-ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK-WVPSSETIRTFMRH 419 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~p~~~~~~~l~~~ 419 (490)
. ..-++.+|..-+ ++... .|..-|...|..|.- |+..+ ..+++++..... .+.. -..-..||.-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~-~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKISE-ETLMERLKADAT-DNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhcc-chHHHHHHHHHHHHHHHHH
Confidence 1 223455555433 33333 255555555544432 22111 233333333220 0000 00114678888999
Q ss_pred HHhcCChHHHHHHHHHHHHcCC
Q 011226 420 FEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...|+.++|..+|+-.+....
T Consensus 247 ~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhH
Confidence 9999999999999998887554
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.23 E-value=0.41 Score=26.69 Aligned_cols=26 Identities=23% Similarity=0.117 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMK 150 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~ 150 (490)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
No 300
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.20 E-value=15 Score=37.40 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=105.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCH----H---HHHHHH-HHHHHcCCHHHHHHHHHHHHHcc----CCCCHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADW----T---TFSNLA-SIYVEAGLFEKAERALKELENRN----AHRDLSAYQFLI 271 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~---~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l~ 271 (490)
....++++|..++.++...- ..|+. . .++.+- ......|++++|.++.+.....- ..+....+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44567778877777776642 11111 1 122222 12234677777777776655421 123345556666
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHH---H--HHHHHhcCChhhH--HHHHHHHHhc----CC--CCChhhHH
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN---M--IQVLVNLKDLPGA--EKCFKEWESG----CA--TYDIRVTN 338 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~~a--~~~~~~~~~~----~~--~~~~~~~~ 338 (490)
.+..-.|++++|..+..+..+..-.-+...+.. + ...+...|+...+ ...|...... .. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 667777888888877766654422223332222 1 1223445532222 2222222211 00 01112333
Q ss_pred HHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 011226 339 VMIGAYAK-EGRLENAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 415 (490)
Q Consensus 339 ~li~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~ 415 (490)
.+..++.+ .+...++..-+.-.......|-...+. .++......|+.++|...++++......++ ..++...-..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~--~~~~~~a~~~ 662 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ--YHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC--CCchHHHHHH
Confidence 33444333 112222222222222222222222222 456667778888888888888777653211 1222222222
Q ss_pred HHH--HHHhcCChHHHHHHHHH
Q 011226 416 FMR--HFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 416 l~~--~~~~~g~~~~a~~~~~~ 435 (490)
.+. .....|+.+.+...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 23456676666665554
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.17 E-value=0.54 Score=41.29 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+.|.+.|.+++|+++|...+... | ++.++..-..+|.+...+..|+.-...++.++- .-..+|..-+.+-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHH
Confidence 35778888888888888887776 5 777777777888888888888877777766553 3344444444444
Q ss_pred HhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 456 AAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 456 ~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
...|...++-.+.-....++|+...
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcccHH
Confidence 4444444444444444566666443
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.13 E-value=3.6 Score=33.42 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-H------H
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-L------S 265 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~------~ 265 (490)
.+..+...|++.|+.+.|.+.|.++.+.. ..+. ...+-.+|......+++..+...+.+....--.+. . .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45566677777777777777777776653 2222 22345566666777777777776666544211111 1 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
.|..+ .+...+++..|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 11111 2234567777776665543
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.06 E-value=5.2 Score=31.87 Aligned_cols=30 Identities=13% Similarity=0.411 Sum_probs=14.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011226 216 IEEMKRDGRVAADWTTFSNLASIYVEAGLFE 246 (490)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (490)
++.+.+.+ ++++...+..++..+.+.|++.
T Consensus 17 irSl~~~~-i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHN-IPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 33333334 4455555555555555555433
No 304
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=8.4 Score=34.21 Aligned_cols=151 Identities=10% Similarity=0.019 Sum_probs=89.8
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH----hhHHHHHHHHHHcCChh
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDIS 210 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 210 (490)
..|++.+|-..++++++. .+.|...++..=+++.-.|+.+.-...++++... ..||. +.-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 356666777777777664 3356666666667777777777777777666543 12232 22233334556677777
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 211 GAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH---RDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
+|++.-++..+. .+.|...-.++.+.+--.|++.++.++..+-.+.=-. .-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 787777777776 5666666677777777777777777766543221000 00111222233455567778888777
Q ss_pred HH
Q 011226 288 RS 289 (490)
Q Consensus 288 ~~ 289 (490)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 64
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.00 E-value=0.92 Score=32.12 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 237 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
+..+-++.+....+.|++....+.+++|.+.+|+..|+++|+.+... +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 44455566666667778888888888888888888888888877765 3333335555543
No 306
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.92 E-value=19 Score=37.99 Aligned_cols=134 Identities=10% Similarity=0.004 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
++++.|+.-+..+. ...|.-.++.--+.|.+.+|..++..=.+ --...|.+..+.+...+.+++|--.|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34555555444431 22344445555566666666665543111 12234555556666777888887777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 358 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
+..-+ ..--+.+|..+|+|++|+.+..++..... --..+-..|..-+...+++-+|.+++.+..
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~d-------e~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKD-------ELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHH-------HHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 65432 12346778888999999888877643210 001222567777788888888888777655
Q ss_pred H
Q 011226 438 K 438 (490)
Q Consensus 438 ~ 438 (490)
.
T Consensus 1027 s 1027 (1265)
T KOG1920|consen 1027 S 1027 (1265)
T ss_pred c
Confidence 4
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.67 E-value=6.9 Score=34.00 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
++.....|..+|.+.+|.++.+.....+. .+...+-.++..+...||--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455667777777777777777666432 456666677777777777666666665553
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.54 E-value=8.7 Score=33.41 Aligned_cols=72 Identities=10% Similarity=0.028 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcH------HHH-HHHhhCCCCCCHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP------VML-RRLKMEKVEVSEASKKLL 484 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~------~~~-~~m~~~~~~p~~~~~~~l 484 (490)
++......|..+|.+.+|.++.++.+..+| .+...|..|+..|...|+.-. .+- ......|+..|....+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy 359 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY 359 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence 455667789999999999999999999999 999999999999999999322 222 223455888887766554
No 309
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.51 E-value=1.4 Score=35.63 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=75.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
.-+...|++++|..-|.++++...+ .........|..-..++.+.+.++.|+.-..+.++++| ....+...-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~--~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPS--TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCcc--ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHH
Confidence 3467899999999999999998621 00011134455556788899999999999999999998 67777777788898
Q ss_pred hcCCCcHHHHHHHhhCCCCCCHH
Q 011226 457 AAGRTSPVMLRRLKMEKVEVSEA 479 (490)
Q Consensus 457 ~~g~~~~~~~~~m~~~~~~p~~~ 479 (490)
+..++.+++-++-+-....|...
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 88778888877766666666654
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.38 E-value=7.4 Score=37.49 Aligned_cols=151 Identities=11% Similarity=0.004 Sum_probs=77.5
Q ss_pred hccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHH
Q 011226 66 RDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEAL 145 (490)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 145 (490)
.-.|+++.|-.++..+. ....+.+.+.+.+.|-.++|+++- +|... -.....+.|+++.|.++
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh---hhhhhhhcCcHHHHHHH
Confidence 34566666655443332 222344555566666666665443 12111 11122345666666666
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 011226 146 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 225 (490)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 225 (490)
..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-- 722 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-- 722 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--
Confidence 54432 234566666666666776666666654432 3445555666666665555555555544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
..|. + ..+|...|+++++.+++..-
T Consensus 723 ~~N~-A----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KNNL-A----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ccch-H----HHHHHHcCCHHHHHHHHHhc
Confidence 2222 1 12344456666666666543
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=4.5 Score=35.44 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
++++++.++..=+..|+-||..++..+|+.+.+.+++.+|.++...|+..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44455555555555555556555555666555555555555555555444
No 312
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=4.8 Score=35.30 Aligned_cols=136 Identities=12% Similarity=0.064 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------ccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELEN----------RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (490)
.+|...-| .|.++|.....|+.-....-.+.. .|......+...++..-....+++.+...+-+++...
T Consensus 16 l~p~~rr~-~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~ 94 (418)
T KOG4570|consen 16 LSPAGRRY-LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSP 94 (418)
T ss_pred CCchhcch-hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCc
Confidence 55544332 356666666666654443323322 2334455566666666666778889988887776431
Q ss_pred ---CCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 295 ---PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 295 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
..++. +-.++++.+. .-++++++.++..=...|+-||.++++.+|+.+.+.+++.+|..+.-.|...
T Consensus 95 ~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 95 NAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 12222 2223333333 3467789988888889999999999999999999999999999988888764
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.76 E-value=36 Score=39.06 Aligned_cols=314 Identities=11% Similarity=0.008 Sum_probs=166.0
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGM--NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMT 139 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 139 (490)
..+-.+.+.+.+|+-.++.-..... .-....|-.+...|+..+++|...-+...-.. +...+.. |-.....|++
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl~~q-il~~e~~g~~ 1465 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSLYQQ-ILEHEASGNW 1465 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccHHHH-HHHHHhhccH
Confidence 3345567788888888887411110 11222344445588888998888777764211 2233333 3345677999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHH-HHHHHHHcCChhHHHHHHHH
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV-WMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 218 (490)
..|...|+.+.+.+. +...+++-++......|.++.+....+-.... ..+....++. =+.+.-+.++++.....+.
T Consensus 1466 ~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998763 34677888887777788888777766555443 2333333333 3445577888887777665
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCC--------C-HHHHHHHHHHHHhcCChhHHHHHH
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHR--------D-LSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
.+ ...++.+.. ++....+.. +.-.-.+.++.+...-+.| + ...|..++..+.-.. -....
T Consensus 1543 ---~~-n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~~ 1613 (2382)
T KOG0890|consen 1543 ---DR-NIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENSI 1613 (2382)
T ss_pred ---cc-cccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHHH
Confidence 22 223333321 333333322 2222222333333221111 0 122333333222111 01111
Q ss_pred HHHHHhCCCCCchh------HHHH---HHHHHhcCChhhHHHHHHH-HHhc----CC-CCChhhHHHHHHHHHhcCChhH
Q 011226 288 RSLRLAFPNTANIS------YLNM---IQVLVNLKDLPGAEKCFKE-WESG----CA-TYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 288 ~~~~~~~~~~~~~~------~~~l---~~~~~~~~~~~~a~~~~~~-~~~~----~~-~~~~~~~~~li~~~~~~~~~~~ 352 (490)
+... +..++..+ |..- .+.+.+ ..+-+--+++ +... +. .--..+|-...+.....|+++.
T Consensus 1614 ~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1614 EELK--KVSYDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHhh--ccCccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111 11221111 1111 111111 1111111111 1111 11 1134577778888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|...+-...+.+ .| ..+.....-+-+.|+...|+.++++.+...
T Consensus 1689 A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 998887777754 22 344455667789999999999999999775
No 314
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.76 E-value=11 Score=33.01 Aligned_cols=133 Identities=12% Similarity=0.142 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCC---CCCCHhHHHHHHHHHHH-cC-CHHHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCCCcHHH
Q 011226 106 IDAAENYFVDLPE---TSKNHLTYGSLLNCYCK-EL-MTEKAEALLEKMKEL-NLGFSSMPFNSLMTLYAKTGHPEKIPA 179 (490)
Q Consensus 106 ~~~a~~~~~~~~~---~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 179 (490)
+.+|+++|+.... .-.|..+-..+++.... .+ ....-.++.+-+... +-.++..+...++..++..++|.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4555555552211 22355555555555444 11 122222333333322 334666677777777777777777777
Q ss_pred HHHHHHHC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHH-----HHHCCCCCCCHHHHHHHHHHH
Q 011226 180 IIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEE-----MKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 180 ~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~l~~~~ 239 (490)
+++..... +..-|...|..+++.....||..-..++.++ +.+. +++.+...-..+-..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~-~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRN-NVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeec-CCcCCHHHHHHHHHHH
Confidence 77766554 4455667777777777777777655555443 1222 2555555544444433
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.61 E-value=0.94 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..|..+...+...|++++|+..|+++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356666777777778888888777777765
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.50 E-value=21 Score=35.93 Aligned_cols=370 Identities=12% Similarity=0.094 Sum_probs=173.0
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCC----CChhhHHHH-HHHHHhhCCHHHHHHHHhhcCC-----CCCCHhHHHHHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMN----KTVSDQAIH-LDLVAKVQGIDAAENYFVDLPE-----TSKNHLTYGSLLN 131 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~li~ 131 (490)
++.+.+.+... |...++...+.--. +-...+..+ +..+...++...|.+.++.+.. ..|...++..++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 44444444444 88888876443211 222233333 2233333788888888877766 2233334444554
Q ss_pred HHH--HcCCHHHHHHHHHHHHhCCC---------CCCcchHHHHHHHHH--hcCCCCcHHHHHHHHHH-------CC-C-
Q 011226 132 CYC--KELMTEKAEALLEKMKELNL---------GFSSMPFNSLMTLYA--KTGHPEKIPAIIQEMKA-------SS-I- 189 (490)
Q Consensus 132 ~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~-------~~-~- 189 (490)
+.. +.+..+.+.+.++++..... .|-..+|..+++.++ ..|+++.+...++++.+ .. .
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~ 265 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWP 265 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 443 34556777777776633211 234566667776554 46666676666555532 10 0
Q ss_pred --C-------------------CCHhh---------HHHHHH--HHHHcCChhHHHHHHHHHHHC-------CCCCCCH-
Q 011226 190 --M-------------------PDSYT---------YNVWMR--ALAAVNDISGAERVIEEMKRD-------GRVAADW- 229 (490)
Q Consensus 190 --~-------------------p~~~~---------~~~l~~--~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~- 229 (490)
. |.... ...++. ..+..+..++|.+++++..+. ....+..
T Consensus 266 ~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~s 345 (608)
T PF10345_consen 266 SWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSES 345 (608)
T ss_pred CcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcC
Confidence 0 11111 111222 223344444555544443321 0011111
Q ss_pred -------HHHHHHHH---------HHHHcCCHHHHHHHHHHHHHccCC-CC-------HHHHHHHHHHHHhcCChhHHHH
Q 011226 230 -------TTFSNLAS---------IYVEAGLFEKAERALKELENRNAH-RD-------LSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 230 -------~~~~~l~~---------~~~~~~~~~~A~~~~~~~~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
..|...+. ..+-.+++..|...++.+.+.... |+ ...+....-.+-..|+.+.|..
T Consensus 346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 11211222 223468899999999988763211 11 2222222233445699999999
Q ss_pred HHH--------HHHHhCCCCCchhHHH--HHHHHHh--cCChhh--HHHHHHHHHhc---CCCCChhhHHHH-HHHHHhc
Q 011226 286 IWR--------SLRLAFPNTANISYLN--MIQVLVN--LKDLPG--AEKCFKEWESG---CATYDIRVTNVM-IGAYAKE 347 (490)
Q Consensus 286 ~~~--------~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~--a~~~~~~~~~~---~~~~~~~~~~~l-i~~~~~~ 347 (490)
.|. .....+...+..++.. ++..+.. ..+.++ +.++++.+... .+..+..++..+ +.++...
T Consensus 426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~ 505 (608)
T PF10345_consen 426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF 505 (608)
T ss_pred HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence 997 3333343333333322 1112222 222233 67777766542 222233333443 3333322
Q ss_pred CC--hhHHHHHHHHHHH-c-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC--CHHHH----
Q 011226 348 GR--LENAEELKERARR-R-GADPNAK----TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETI---- 413 (490)
Q Consensus 348 ~~--~~~a~~~~~~~~~-~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~---- 413 (490)
.. ..++...+....+ . ....+.. +++.+-..+. .|+..+..+..........+ .| ....|
T Consensus 506 ~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k-----~~d~~~~LW~~v~ 579 (608)
T PF10345_consen 506 EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKK-----SSDYSDQLWHLVA 579 (608)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh-----hhhhhhHHHHHHH
Confidence 22 2244444433332 1 1111221 2222222333 67777766655554433211 02 23444
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 414 -RTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 414 -~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
..+...+...|+.++|.....+...
T Consensus 580 ~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 580 SGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 2334457788999999988877644
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.12 E-value=2.3 Score=39.48 Aligned_cols=89 Identities=7% Similarity=-0.072 Sum_probs=39.7
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 388 (490)
+...|+++.+...+...... +.....+...+++.....|++++|..+-..|....+. +..........--..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34455555555555443322 1112334444555555555555555555555544333 222222222222333445555
Q ss_pred HHHHHHHHhcC
Q 011226 389 VDCLEKAIDTG 399 (490)
Q Consensus 389 ~~~~~~~~~~~ 399 (490)
.-.|++.....
T Consensus 411 ~~~wk~~~~~~ 421 (831)
T PRK15180 411 YHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccC
Confidence 55555555443
No 318
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.84 E-value=9.6 Score=31.05 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=51.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKRDGRVAADWT----TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...+...|++++|...++..... +.|.. +-..|.+.....|.+|+|+..++.....+. .......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34566677777777777766643 12211 122345556667777777777776654332 1222333445666
Q ss_pred hcCChhHHHHHHHHHHHhC
Q 011226 276 QTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ 294 (490)
..|+-++|..-|......+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777766654
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.55 E-value=1.3 Score=23.96 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.|..+...+...|++++|++.|++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556667777777777777777777664
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.43 E-value=2.4 Score=37.53 Aligned_cols=53 Identities=19% Similarity=0.069 Sum_probs=25.5
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
.|.+.|.+++|+..|.......+. |++++..-..+|.+..++..|..=....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 455555555555555554433221 44444444455555555554444444333
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=26 Score=35.17 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
-..|+..|...+++..|++++-..+
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 3447788888888888888776654
No 322
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.19 E-value=0.26 Score=38.48 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=25.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544433444555555555555554455444443
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.17 E-value=48 Score=38.15 Aligned_cols=319 Identities=10% Similarity=0.027 Sum_probs=158.2
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC
Q 011226 97 LDLVAKVQGIDAAENYFVDLPE----TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTG 172 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 172 (490)
..+-.+++.+..|.-.++.-.. .......|..+...|..-+++|...-+...-.. +...++ -|......|
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g 1463 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASG 1463 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhc
Confidence 3445577778888888877322 111122344444578888888877777654111 122233 333345678
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN-LASIYVEAGLFEKAERA 251 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~ 251 (490)
++..|...|+.+.+.+ ++...+++-++......|.++..+...+-.... ..+....++. =+.+--+.++||.....
T Consensus 1464 ~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred cHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc--cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8888888888887754 223666777777777788888777766666554 3333333333 23444566777776665
Q ss_pred HHHHHHccCCCCHHHHHHH--HHHHHhcC--ChhHHHHHHHHHHHhCCCC------C---chhHHHHHHHHHhcCChhhH
Q 011226 252 LKELENRNAHRDLSAYQFL--ITLYGQTG--NLSEVYRIWRSLRLAFPNT------A---NISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~~~a 318 (490)
.. + .+..+|... .....+.. |.-.-.+..+.+++.-+.| . ...|..++....-.. .+.-
T Consensus 1541 l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~ 1612 (2382)
T KOG0890|consen 1541 LS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENS 1612 (2382)
T ss_pred hh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHH
Confidence 54 1 122233322 22222222 1111112333332221111 0 012223322221111 0101
Q ss_pred HHHHHHHHh-cCCCCChhhHHHHHHHHHhcCChhHHHHHHHH-HHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 319 EKCFKEWES-GCATYDIRVTNVMIGAYAKEGRLENAEELKER-ARRRGADP-----NAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 319 ~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.+.+..... ....-+...|..-+..-....+..+-+--+++ +......| -..+|....+..-.+|+++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 111111000 00011111121111111111111221111111 11111122 234677777777789999999998
Q ss_pred HHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 392 LEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+-++.+.+ -+..+--...-+...|+...|..++++.++...
T Consensus 1693 ll~A~e~r---------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESR---------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhcc---------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 88887775 234455666778899999999999999987554
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.16 E-value=8.8 Score=29.71 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=25.9
Q ss_pred hCCHHHHHHHHhhcCCCCCCH---hHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011226 103 VQGIDAAENYFVDLPETSKNH---LTYGSLLNCYCKELMTEKAEALLEKMKELN 153 (490)
Q Consensus 103 ~g~~~~a~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 153 (490)
.++.+++..+++.+.-..|+. .++..+ .+...|+|++|.++|+++.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 455666666665555433332 223222 2445666666666666666543
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.93 E-value=1 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+|..+...|...|++++|...|++..+..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678888999999999999999999998765
No 326
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.61 E-value=5.6 Score=38.26 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=45.4
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|......+ .|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~----------~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDLG----------SLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcchh----------hhhhhhhhcCChhHHH
Confidence 4455555555443321 34445556666666666666655555544332 3444444455544444
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 250 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
.+-....+.|. .| .-.-+|...|+++++.+++.
T Consensus 713 ~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 713 VLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHH
Confidence 43333333332 11 12223445555555555543
No 327
>PRK09687 putative lyase; Provisional
Probab=88.56 E-value=17 Score=32.19 Aligned_cols=233 Identities=13% Similarity=0.002 Sum_probs=114.6
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHccCCCCHHH
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF----EKAERALKELENRNAHRDLSA 266 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~ 266 (490)
+|.......+.++...|..+ +...+..+.+. ++...-...+.+++..|+. +++...+..+... .++...
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 46666666666666666533 33333334332 3445555566666666653 3566666655322 245444
Q ss_pred HHHHHHHHHhcCCh-----hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 267 YQFLITLYGQTGNL-----SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 267 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
-...+.++...+.. ..+...+.... ..++..+-...+.++.+.++. .+...+-.+.+. ++..+-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 44455555544321 12222222222 222444445556666666653 344444444432 2333444444
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHH
Q 011226 342 GAYAKEG-RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF 420 (490)
Q Consensus 342 ~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 420 (490)
.++...+ +...+...+..+.. .++...-...+.++.+.|+ ..|+..+-+.++.+ + .....+.++
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---------~--~~~~a~~AL 245 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---------T--VGDLIIEAA 245 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---------c--hHHHHHHHH
Confidence 4454432 23345555555553 2355555566666666665 45555555555543 1 223455666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 421 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 421 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
...|+. +|...+..+.+.. +|..+-..-+.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 666664 4666666666544 2444444444443
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.11 E-value=2.7 Score=34.67 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCC----CCHhHHHHHHHH
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETS----KNHLTYGSLLNC 132 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~li~~ 132 (490)
+...+..+.+.+++++|+...+.-.+.. +.+...-..+++.++-.|++++|..-++...... +-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445666677777777777777766664 3455556677777777777777766665554422 223345555543
No 329
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=88.04 E-value=30 Score=34.44 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011226 319 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
....+.+...-+-.+......++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+.-+.++|+....-.+...+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444433333444555566666666666666666665544311 223344444555566665555544444443
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.78 E-value=32 Score=34.54 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHh---cCChhhHHHHHHHHHhc
Q 011226 300 ISYLNMIQVLVN---LKDLPGAEKCFKEWESG 328 (490)
Q Consensus 300 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 328 (490)
.-+..||..|.+ ..+...|.+++-.+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 456677777765 45666777776665543
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.66 E-value=31 Score=34.18 Aligned_cols=152 Identities=16% Similarity=0.038 Sum_probs=72.5
Q ss_pred HHHcCCHHHHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhcC-----CCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 133 YCKELMTEKAEALLEKMKE-------LNLGFSSMPFNSLMTLYAKTG-----HPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
+....|++.|+..|+...+ .+ ......-+..+|.+.. +.+.|..++....+.|. |+...+...+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3355677777777777765 33 3334555555555543 23446666666666552 2333322222
Q ss_pred HHHHH-cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 201 RALAA-VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV----EAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 201 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
.-... ..+...|.++|...-+.| ..+ .+-.+..+|. -..+...|..++++....|. |....-...+..+.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G-~~~---A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAG-HIL---AIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYG 409 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcC-ChH---HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHc
Confidence 21111 134566777777766665 211 1112222222 12355666666666666552 22111112222233
Q ss_pred hcCChhHHHHHHHHHHHhC
Q 011226 276 QTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ 294 (490)
. +.++.+.-.+..+.+.+
T Consensus 410 ~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 410 V-GRYDTALALYLYLAELG 427 (552)
T ss_pred c-ccccHHHHHHHHHHHhh
Confidence 3 55555555555554443
No 332
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.50 E-value=19 Score=31.54 Aligned_cols=63 Identities=10% Similarity=0.270 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
++..+...++..++..++|.+-+++|+..... ++..|...|..+|......|+..-..++..+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 44555555666666666666666666554433 3444555566666666666665555444443
No 333
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.44 E-value=35 Score=34.49 Aligned_cols=315 Identities=9% Similarity=-0.050 Sum_probs=160.0
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEK 141 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 141 (490)
+....+.|++..+.++...+...-.. ....|..+...+ .....++...+++.-...+.....-...+..+.+.+++..
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL~-~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPLY-PYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCcH-hHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 34455678888887777766433221 111222222211 1235677777777776644444455556666777788887
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHH--HHHHHH
Q 011226 142 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAE--RVIEEM 219 (490)
Q Consensus 142 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~--~~~~~~ 219 (490)
.+..+.. .+.+...-.....+....|+.++|......+-..|- ..+..++.++..+.+.|.+.... +=++.+
T Consensus 118 ~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7763311 123444445666777778887777777666655542 24566777777777666544322 222222
Q ss_pred HHCCCCCCCHHHHHHHHHHH-----------HH-cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH--HhcCChhHHHH
Q 011226 220 KRDGRVAADWTTFSNLASIY-----------VE-AGLFEKAERALKELENRNAHRDLSAYQFLITLY--GQTGNLSEVYR 285 (490)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~-----------~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~ 285 (490)
...| +...-..+...+ .. ..+...+...+.. +.++...-..++-++ ....+.+.|..
T Consensus 192 l~~~----~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 192 MKAG----NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHCC----CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 2222 111111111111 00 0111112111111 112221111111122 23456688888
Q ss_pred HHHHHHHhCCC-CCc--hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 286 IWRSLRLAFPN-TAN--ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 286 ~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
++........- +.. .....+.......+..+++...+....... .+......-+......++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 88876444321 111 123333333333333556666666543322 2444455555666688888888888888754
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011226 363 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 363 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 396 (490)
.. .-...-.--+.+++...|+.++|...|+.+.
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 31 2133333445667677888888888888874
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.97 E-value=13 Score=28.92 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=24.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGADPNAKTWEI-FSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.++.+++..+++.|.-. .|+..-... -...+...|++.+|+++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 45556666666555542 333222111 1223445566666666666665554
No 335
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=42 Score=34.82 Aligned_cols=116 Identities=12% Similarity=0.017 Sum_probs=58.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHH-----HHHHHhc--CCCCCCC--
Q 011226 343 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG--------DMKLAVDC-----LEKAIDT--GRGDGGK-- 405 (490)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------~~~~A~~~-----~~~~~~~--~~~~~~~-- 405 (490)
.|......+-+..+++.+....-.++..-.+.++..|...= +-+++.+. +..+++. ...|+..
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 35555666777777777765444445555555555554211 11122222 1222211 1111111
Q ss_pred CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH------------c-CCCCCHHhHHHHHHHHHhc
Q 011226 406 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK------------A-VDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 406 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~-~~~~~~~~~~~l~~~~~~~ 458 (490)
..|....|....-.+.+.|+.++|..++-..+. . ...++...|..++..|...
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 012233333333334578888888887765543 1 2335788888888888776
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.56 E-value=2.2 Score=24.33 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
No 337
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.36 E-value=2.2 Score=24.34 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
.+++.+...|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777888888888888888877655
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.00 E-value=13 Score=29.83 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcC----C-------hHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK----D-------VDGAEGFLEILKKAVDDLGVEVFEPLI 452 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 452 (490)
+++|+.-|++++... |+ ..++..+..+|...+ + +++|...|+++...+ |+...|+.-+
T Consensus 51 iedAisK~eeAL~I~--------P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~--P~ne~Y~ksL 120 (186)
T PF06552_consen 51 IEDAISKFEEALKIN--------PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED--PNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence 456666777777766 77 678888888876544 2 556666666666666 5777777777
Q ss_pred HHHHh
Q 011226 453 RTYAA 457 (490)
Q Consensus 453 ~~~~~ 457 (490)
....+
T Consensus 121 e~~~k 125 (186)
T PF06552_consen 121 EMAAK 125 (186)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66643
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.89 E-value=41 Score=33.85 Aligned_cols=164 Identities=12% Similarity=0.060 Sum_probs=96.2
Q ss_pred HhHHHHHHHHh-ccCCchHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhhCCHHHHHHHHhhcCC--C--CCCHh-
Q 011226 56 WEVGDTLKKLR-DRKLYYPALKLSENMEKRGMNKTVS-----DQAIHLDLVAKVQGIDAAENYFVDLPE--T--SKNHL- 124 (490)
Q Consensus 56 ~~~~~ll~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~~~~- 124 (490)
.+...+...|. ...++++|...+++.....-+++.. ....++..+.+.+... |....+...+ . .-+..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445566665 5688999999999885443333332 2234456666666555 8888887666 1 11122
Q ss_pred -HHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCcchHHHHHHHHH--hcCCCCcHHHHHHHHHHCCC--------
Q 011226 125 -TYGSL-LNCYCKELMTEKAEALLEKMKELN---LGFSSMPFNSLMTLYA--KTGHPEKIPAIIQEMKASSI-------- 189 (490)
Q Consensus 125 -~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~-------- 189 (490)
.+..+ +..+...+++..|.+.++.+.... ..|-..++-.++.+.. ..+..+++.+.++.+.....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 23333 233333489999999998886642 2233444455555544 35556778888887743321
Q ss_pred -CCCHhhHHHHHHHH--HHcCChhHHHHHHHHHH
Q 011226 190 -MPDSYTYNVWMRAL--AAVNDISGAERVIEEMK 220 (490)
Q Consensus 190 -~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 220 (490)
.|...+|..+++.+ ...|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23456676676644 55677666666555443
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.27 E-value=19 Score=29.65 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 429 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 429 (490)
-+.|...|-.+...+.--++..-..+ ..|....+.++++.++.+.++..... -.+|+..+.+|+..+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~---~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPD---DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHhcchhhh
Confidence 36777878777776544444444444 44444678888888888888774221 247788888888888888888877
Q ss_pred H
Q 011226 430 E 430 (490)
Q Consensus 430 ~ 430 (490)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.17 E-value=2.1 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+-.+..++.+.|++++|.+.|+++++.-|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44567788899999999999999998775
No 342
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.12 E-value=36 Score=32.46 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 304 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (490)
.+.|....-+++..+..+..+.-...+..+|..-| .+...|..++.+|... ..+.-..+|+++.+.... |...-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34444455556666666655655556666655533 3445555666666655 345555566655554332 2222222
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWE 326 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~ 326 (490)
|...|. .++...+..+|..+.
T Consensus 138 La~~yE-kik~sk~a~~f~Ka~ 158 (711)
T COG1747 138 LADKYE-KIKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHH-HhchhhHHHHHHHHH
Confidence 333222 255555555555543
No 343
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.50 E-value=2 Score=22.86 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+..++.+.|++++|.+.|+++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34556667777888888888777765
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.96 E-value=3.1 Score=22.40 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+|..+...|...|++++|.+.|++..+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44555566666777777777777666543
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.79 E-value=9.7 Score=36.63 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 304 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (490)
+.|-+...|...-.+.-.|+...|...+.......+...-+....|...+.+.|...+|..++.+..... ...+.++..
T Consensus 603 ~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~ 681 (886)
T KOG4507|consen 603 NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLS 681 (886)
T ss_pred CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHh
Confidence 3344433333333333456777777766665443222223344455666666677777777777665544 234456667
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
+.+++....++++|++.|+...+..++ +...-+.|...-
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIR 720 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 777777777888888888777766554 555555554433
No 346
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.45 E-value=8.2 Score=37.08 Aligned_cols=105 Identities=14% Similarity=0.010 Sum_probs=82.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
...|+...|...+.........-..+....+...+.+.|....|-.++.+.+.... ..+-++..+.+++....
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-------sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-------SEPLTFLSLGNAYLALK 690 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-------cCchHHHhcchhHHHHh
Confidence 44688899999888877543333344556677777888888899999888877752 45678888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
+++.|++.|+++.++.+ .+...-+.|...-|.
T Consensus 691 ~i~~a~~~~~~a~~~~~-~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTT-KCPECENSLKLIRCM 722 (886)
T ss_pred hhHHHHHHHHHHHhcCC-CChhhHHHHHHHHHh
Confidence 99999999999999998 888888888776653
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.18 E-value=10 Score=28.31 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=39.4
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA 236 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 236 (490)
..+-++.+....+.|++.....-+++|.+.+|+..|.++|+-+... +.+....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3444555555667788888888888888888888888888887765 444444455444
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.47 E-value=4.1 Score=23.95 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=12.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRD 222 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~ 222 (490)
+..+|...|+.+.|..+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 444555555555555555555543
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.87 E-value=21 Score=26.70 Aligned_cols=71 Identities=11% Similarity=0.042 Sum_probs=46.4
Q ss_pred HHhcCCCCHHhHHHHHHHHhccCC--chHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC
Q 011226 47 LKSKKRVFKWEVGDTLKKLRDRKL--YYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE 118 (490)
Q Consensus 47 ~~~~~~~~~~~~~~ll~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 118 (490)
..+|.. +...+..--..|..... --+..+.++.+...++.|++......+.++-+.+++..|..+|+.+..
T Consensus 40 ~~hg~e-t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 40 MEHGPE-TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhcCcc-cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334443 44444444333433222 225556666777777888888888888888888888888888888776
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.65 E-value=9.5 Score=30.65 Aligned_cols=97 Identities=10% Similarity=-0.030 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++.|.+.++.....+. .|...++....++... .-+++|+.-|++++..+| ....++..+.++
T Consensus 7 FE~ark~aea~y~~nP-------~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P-~~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-------LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP-NKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T-T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-------HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 4556666666555551 3455544444433322 235667777888888898 778888999999
Q ss_pred HHhcCC--C----cH-----HHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 455 YAAAGR--T----SP-----VMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 455 ~~~~g~--~----~~-----~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
|...+. . ++ +....-++...+|+..+++.-.+.+.
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 988877 1 11 22233345578999999987776654
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.35 E-value=35 Score=28.90 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=29.1
Q ss_pred CChhHHHHHHHHHHHCCC-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH
Q 011226 207 NDISGAERVIEEMKRDGR-VAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRDL 264 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~-~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 264 (490)
.++++|+..|+..-+.-. ...+. ..+......-...+++.+|.++|+++....+..+.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 355556655555544210 11111 11222333344567777888888777765554443
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.74 E-value=4.9 Score=23.63 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=16.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 235 LASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 566677777777777777766653
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.69 E-value=3.3 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 011226 129 LLNCYCKELMTEKAEALL 146 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~ 146 (490)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 444444555555555444
No 354
>PRK10941 hypothetical protein; Provisional
Probab=78.81 E-value=43 Score=29.40 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHhHHH
Q 011226 373 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-LGVEVFEP 450 (490)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 450 (490)
+.+-.+|.+.++++.|+++.+.++... |+ +.-+.--.-.|.+.|.+..|..-++..++.-|. |+......
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 455667889999999999999999987 54 666777777899999999999999999887652 45555555
Q ss_pred HHHHHHh
Q 011226 451 LIRTYAA 457 (490)
Q Consensus 451 l~~~~~~ 457 (490)
.+..+.+
T Consensus 257 ql~~l~~ 263 (269)
T PRK10941 257 QIHSIEQ 263 (269)
T ss_pred HHHHHhh
Confidence 5555443
No 355
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.73 E-value=40 Score=28.59 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=18.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
....-+..+++.+|+++|+++-.....
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445678888999999888765443
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.72 E-value=45 Score=29.17 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=16.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
..++..+.+.|.+.+|+.+...+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH
Confidence 356777888888888877655443
No 357
>PRK09687 putative lyase; Provisional
Probab=78.37 E-value=48 Score=29.38 Aligned_cols=234 Identities=9% Similarity=0.002 Sum_probs=134.4
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCCHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDI----SGAERVIEEMKRDGRVAADWTT 231 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 231 (490)
+|.......+..+...|. +.+...+..+... +|...-...+.++...|+. +++...+..+.. ..++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~---~D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL---EDKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh---cCCCHHH
Confidence 566667777777766664 4455555555443 3556666667777777763 456666666643 2355555
Q ss_pred HHHHHHHHHHcCCH-----HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHH
Q 011226 232 FSNLASIYVEAGLF-----EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI 306 (490)
Q Consensus 232 ~~~l~~~~~~~~~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 306 (490)
-...+.++...+.. .++...+..... .++..+-...+.++.+.++ .+++..+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 55556665554321 233343333332 2455555666777777776 4555555555532 3334444555
Q ss_pred HHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011226 307 QVLVNLK-DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 385 (490)
Q Consensus 307 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 385 (490)
.++...+ +.+.+...+..+.. .++..+....+.++.+.|+ ..+...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555543 23345555555543 2356666677777877777 45555555555432 2 234566777777774
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 421 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 421 (490)
+|+..+.++.+.. ||..+-...+.+|.
T Consensus 252 -~a~p~L~~l~~~~--------~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYKF--------DDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhhC--------CChhHHHHHHHHHh
Confidence 6888888887765 67776666666654
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.33 E-value=37 Score=28.04 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG--RVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
+.|.+.|-.+...+.--++..... +..|....|.+++..++....+.. ...+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555544443323222222 223333445555555555544421 0244555555666666666555554
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.99 E-value=4.8 Score=20.54 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.|..+...+...|+++.|...++..++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 567778888999999999999998887654
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.81 E-value=41 Score=29.36 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=38.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh--
Q 011226 200 MRALAAVNDISGAERVIEEMKRDG-RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ-- 276 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 276 (490)
|.+++..|+|.++....-+-.+.. ++|| .....=|-.|.+.+.+..+.++-......--.-+...|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 455555555555554333322211 1222 22223344455566666555555554442222223335554444433
Q ss_pred ---cCChhHHHHHH
Q 011226 277 ---TGNLSEVYRIW 287 (490)
Q Consensus 277 ---~~~~~~a~~~~ 287 (490)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35666665554
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.24 E-value=1e+02 Score=31.91 Aligned_cols=265 Identities=13% Similarity=0.057 Sum_probs=142.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC---------------CCCCCcchH----HHHHHHH--HhcCCCCcHHHHHHHHHHC
Q 011226 129 LLNCYCKELMTEKAEALLEKMKEL---------------NLGFSSMPF----NSLMTLY--AKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~----~~l~~~~--~~~~~~~~a~~~~~~~~~~ 187 (490)
.|....+.|+++.|..++++.... ++ |+.... -.+..++ ....++++|..++.++...
T Consensus 366 AI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~ 444 (894)
T COG2909 366 AIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHF 444 (894)
T ss_pred HHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 344455678888877777765111 12 222222 1233333 3467899999999888654
Q ss_pred CCCCCH-------hhHHHHHH-HHHHcCChhHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 188 SIMPDS-------YTYNVWMR-ALAAVNDISGAERVIEEMKRDG---RVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 188 ~~~p~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
-..|+. ..++.+-. .....|+++.|.++.+.....- ...+....+..+..+..-.|++++|..+..+..
T Consensus 445 l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 445 LKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred hCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 222222 13443322 3456789999999988887751 122334456677788888999999999988776
Q ss_pred HccCCCCHHHHHHHH-----HHHHhcCC--hhHHHHHHHHHHHhCC--CC----CchhHHHHHHHHHhc-CChhhHHHHH
Q 011226 257 NRNAHRDLSAYQFLI-----TLYGQTGN--LSEVYRIWRSLRLAFP--NT----ANISYLNMIQVLVNL-KDLPGAEKCF 322 (490)
Q Consensus 257 ~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~--~~----~~~~~~~l~~~~~~~-~~~~~a~~~~ 322 (490)
+..-.-+...+.... ..+...|. ..+....|........ +| -..++..++.++.+. +...++..-+
T Consensus 525 ~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~ 604 (894)
T COG2909 525 QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGI 604 (894)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcc
Confidence 643333443333322 23455663 2333334443332211 11 122344455555541 1122222222
Q ss_pred HHHHhcCCCCChhhH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHH--HHHhcCCHHHHHHHHHH
Q 011226 323 KEWESGCATYDIRVT--NVMIGAYAKEGRLENAEELKERARRRGADPN----AKTWEIFSD--YYLRNGDMKLAVDCLEK 394 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~--~~~~~g~~~~A~~~~~~ 394 (490)
.-.....+.|-.... ..|+..+...|+.++|...++++......++ ..+-...+. .....|+...+.....+
T Consensus 605 ~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 605 EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222222232222222 3677888889999999999999986433332 222222222 23467888877777665
No 362
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.17 E-value=72 Score=30.22 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=7.4
Q ss_pred HHHHHcCCHHHHHHHH
Q 011226 131 NCYCKELMTEKAEALL 146 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~ 146 (490)
...+..|+.+.+..++
T Consensus 73 ~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 73 HDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3344555555444433
No 363
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.00 E-value=15 Score=22.70 Aligned_cols=34 Identities=6% Similarity=-0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
..+.-++.+.|+++.|.+..+.+++..| .|..+-
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP-~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEP-DNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCC-CcHHHH
Confidence 3456688999999999999999999998 665443
No 364
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=75.12 E-value=25 Score=24.38 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHH
Q 011226 39 VRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAA 109 (490)
Q Consensus 39 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 109 (490)
+..+++.+...| ..+......+-..-...|+.+.|.+++..+. .| |+. |...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~-ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~a--F~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQG-LLTEEDRNRIEAATENHGNESGARELLKRIV-QK--EGW--FSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--CcH--HHHHHHHHHHcCchhhh
Confidence 344455554444 3444444444333334455556666665555 43 222 44555555555544333
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.91 E-value=51 Score=28.80 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH---
Q 011226 234 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV--- 310 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 310 (490)
.=|.++...++|.+++...-+--+.--+........-|-.|.+.+.+..+.++-..-.+..-.-+...|..+++.|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34677888888888877665543321122334555666678888888888887777665433334445777666654
Q ss_pred --hcCChhhHHHHH
Q 011226 311 --NLKDLPGAEKCF 322 (490)
Q Consensus 311 --~~~~~~~a~~~~ 322 (490)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 378888888776
No 366
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.84 E-value=82 Score=30.25 Aligned_cols=179 Identities=10% Similarity=0.052 Sum_probs=84.7
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 235 (490)
.|....-+++..+.++..+.-+..+..+|...| .+...|..++++|... ..+.-..+++++.+. .-.|...-..|
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReL 138 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGREL 138 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHH
Confidence 344445555666655555566666666665543 3445555666666555 445555566655554 22233222333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCC--C---HHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCCCchhHHHHHHHH
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHR--D---LSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVL 309 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 309 (490)
+..|-+ ++...+..+|.++..+-++. + ...|..+... -..+.+..+.+...++.. |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 333333 55556666665555432210 0 1233333321 123444444444444432 2222223333344455
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA 343 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 343 (490)
....++++|++++..+.+.+.+ |......++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 5566666666666665555433 44444444443
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.69 E-value=12 Score=25.29 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=33.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 011226 346 KEGRLENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCL 392 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 392 (490)
..++.++|+..|....+.-..|.. .++..++.+|+..|++++++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888875333222 35667778888888888877654
No 368
>PRK10941 hypothetical protein; Provisional
Probab=74.52 E-value=28 Score=30.53 Aligned_cols=54 Identities=15% Similarity=-0.033 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 466 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 466 (490)
..+.+-.+|.+.++++.|.++.+.++...| .++.-+.--.-.|.+.|.+..|+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~ 236 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 345667789999999999999999999999 889888888999999999666654
No 369
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.79 E-value=31 Score=24.98 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=53.2
Q ss_pred ccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 011226 67 DRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALL 146 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 146 (490)
.....++|..+.+++...+. ....+...-+..+.+.|+++.| +..-.....||...|.+|-. .+.|--+++...+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 45678899999999988763 2333333445667788999999 33333445588888876654 4778888888888
Q ss_pred HHHHhCCC
Q 011226 147 EKMKELNL 154 (490)
Q Consensus 147 ~~~~~~~~ 154 (490)
.++...|-
T Consensus 93 ~rla~~g~ 100 (116)
T PF09477_consen 93 TRLASSGS 100 (116)
T ss_dssp HHHCT-SS
T ss_pred HHHHhCCC
Confidence 87777653
No 370
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=73.61 E-value=1.3e+02 Score=31.98 Aligned_cols=324 Identities=8% Similarity=-0.053 Sum_probs=161.5
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHH-------HHHHHHhhC---CHHHHHHHHhhcCCCCCCHhHHHHHHHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAI-------HLDLVAKVQ---GIDAAENYFVDLPETSKNHLTYGSLLNC 132 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~li~~ 132 (490)
.++...+.+++|+..|+++...- +-....|.. ++.-....| .+++|+.-|+.+...+.-+--|--=.-+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 46666778888888888885542 111222222 222222333 4778888888887743344445444556
Q ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCCc--------------------chHHHHHHHHHh---cCCCCcHHHHHHHHHHC-
Q 011226 133 YCKELMTEKAEALLEKMKELN-LGFSS--------------------MPFNSLMTLYAK---TGHPEKIPAIIQEMKAS- 187 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~-~~~~~--------------------~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~- 187 (490)
|-+.|++++-.+.+.-..++- ..|-. .+|..++-+... .-...+-.++|+.+...
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHKQ 641 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhc
Confidence 778888888777776655542 11211 122222222221 11123334555555433
Q ss_pred ------CCCCCHhhHHH-HHH--HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 188 ------SIMPDSYTYNV-WMR--ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 188 ------~~~p~~~~~~~-l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
.+.+.+.++.. -+. ...-.|..---..+|+..... ++..+.....-+.+..|.++-+.+....+...
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (932)
T PRK13184 642 QATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDL----RDYRALADIFYVACDLGNWEFFSQFSDILAEV 717 (932)
T ss_pred cCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhc----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 12222222211 111 112345555555666666553 34455555666667788888777766666532
Q ss_pred cCC---C-C--------HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc--hhHHHHHHHHHhcCChhhHHHHHHH
Q 011226 259 NAH---R-D--------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISYLNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 259 ~~~---~-~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
-.. | + ...|-.-+.+.....+++++.+.+... .|.. ..+..++.-+...++.+...++.+.
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (932)
T PRK13184 718 SDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQL 792 (932)
T ss_pred hhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 111 1 1 111222244555555666666544432 2222 2333334444445555555555555
Q ss_pred HHhcCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 011226 325 WESGCATYD--IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY--YLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 325 ~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 397 (490)
+........ ......-|.+|.-..++++|-+++......-.. +..+...++-+ ++-.++.+-|...|.-..+
T Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 793 IYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLL-DEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhc-cccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 544322211 223345567777788888888888665443222 22222222222 2455666666666766663
No 371
>PF13934 ELYS: Nuclear pore complex assembly
Probab=73.35 E-value=57 Score=27.79 Aligned_cols=105 Identities=6% Similarity=-0.083 Sum_probs=57.3
Q ss_pred HHHHHHHHH--hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 011226 93 QAIHLDLVA--KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 93 ~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (490)
|...++++. ..++++.|.+.+..-.- .......++.++...|+.+.|+.+++...-.. .+......++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~---~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSL---IPWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCC---CcccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HH
Confidence 344555554 44677777777744321 11222357777777888888888887643211 111222233333 55
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
++.+.+|..+-+...+.. ....+..++..+...
T Consensus 153 ~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEE 185 (226)
T ss_pred cCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHH
Confidence 677778877766654421 144555666655533
No 372
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=73.15 E-value=73 Score=28.94 Aligned_cols=28 Identities=14% Similarity=-0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 338 NVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
..+...+..+|..+.|..+++.+.+.++
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3444555678999999999999988654
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.71 E-value=10 Score=19.81 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 424 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 424 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
|+.+.|..+|++++...+ .+...|..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHHH
Confidence 568899999999998877 788888877764
No 374
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.57 E-value=5.3 Score=37.27 Aligned_cols=103 Identities=16% Similarity=0.084 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 377 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR-TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
..+...+.++.|+.++.++++.. ||-..|. .-..++.+.+++..|..-+.++++..| .....|..=..++
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld--------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP-~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD--------PNCAIYFANRALAHLKVESFGGALHDALKAIELDP-TYIKAYVRRGTAV 82 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC--------CcceeeechhhhhheeechhhhHHHHHHhhhhcCc-hhhheeeeccHHH
Confidence 34456677888888888888876 6544443 233677788888888888877777775 4555555555555
Q ss_pred HhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhh
Q 011226 456 AAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488 (490)
Q Consensus 456 ~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 488 (490)
...++..+++........+.|+..-......-|
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 555556666666666667777766555444433
No 375
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.48 E-value=82 Score=29.21 Aligned_cols=60 Identities=8% Similarity=-0.114 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCC----CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPE----TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKE 151 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 151 (490)
.+..+.+.|..+|+++.|.+.|.+... .......|-.+|..-.-.|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 344555566666666666666666444 112233444555555555665555555444433
No 376
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.24 E-value=77 Score=31.97 Aligned_cols=210 Identities=17% Similarity=0.149 Sum_probs=120.8
Q ss_pred hccchhHHHHHHhhcCC--CCccHHHHHHHHHHh---cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCC-----
Q 011226 18 KKHLEEALYDRLFKKGS--SDVSVRQQLNQFLKS---KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMN----- 87 (490)
Q Consensus 18 ~~~~~~~l~~~l~~~~~--~~~~~~~~l~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~----- 87 (490)
+.+.-+.++..+.+... +-....+.++.+... ....++.++..++-.|....+++..+++.+.+...--.
T Consensus 159 sah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve 238 (1226)
T KOG4279|consen 159 SAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVE 238 (1226)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhc
Confidence 44556677777777665 555666777777654 33456888999999999999999999999988654210
Q ss_pred -CC-hhhHHHHHHHHHhhCCHHHHHHHHhhcCC----CCCCHhH-----HHHH--HHHHHHcCCHHHHHHHHHHHHhCCC
Q 011226 88 -KT-VSDQAIHLDLVAKVQGIDAAENYFVDLPE----TSKNHLT-----YGSL--LNCYCKELMTEKAEALLEKMKELNL 154 (490)
Q Consensus 88 -~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~-----~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~ 154 (490)
++ ...|...++---+-|+-++|+...-.+.+ ..||... |.-+ -+.|...+..+.|.+.|++.-+.
T Consensus 239 ~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev-- 316 (1226)
T KOG4279|consen 239 THNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV-- 316 (1226)
T ss_pred cCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--
Confidence 11 11333444444456888888887766655 4566542 3221 23345556777888888887663
Q ss_pred CCCcch---HHHHHHHHHhcCCCCcHHHHHHH------HH-HCCCCCCHhhH---HHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 155 GFSSMP---FNSLMTLYAKTGHPEKIPAIIQE------MK-ASSIMPDSYTY---NVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 155 ~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~------~~-~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
.|+..+ +.+|+.+.. ..++..+++-.- +. +.|.--+...| ...+.+-.-.+++.+|.+.-+.|.+
T Consensus 317 eP~~~sGIN~atLL~aaG--~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 317 EPLEYSGINLATLLRAAG--EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred CchhhccccHHHHHHHhh--hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc
Confidence 354432 333333322 223433332211 11 11111111111 1233445567788888888888888
Q ss_pred CCCCCCCHHHHH
Q 011226 222 DGRVAADWTTFS 233 (490)
Q Consensus 222 ~~~~~~~~~~~~ 233 (490)
. .+|.+..-.
T Consensus 395 L--k~P~WYLkS 404 (1226)
T KOG4279|consen 395 L--KPPVWYLKS 404 (1226)
T ss_pred c--CCceehHHH
Confidence 6 566665443
No 377
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.84 E-value=92 Score=29.49 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=6.0
Q ss_pred hhCCHHHHHHHHh
Q 011226 102 KVQGIDAAENYFV 114 (490)
Q Consensus 102 ~~g~~~~a~~~~~ 114 (490)
+.|+.+-+..+++
T Consensus 11 ~~g~~~iv~~Ll~ 23 (413)
T PHA02875 11 LFGELDIARRLLD 23 (413)
T ss_pred HhCCHHHHHHHHH
Confidence 3445444444444
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.25 E-value=51 Score=28.07 Aligned_cols=78 Identities=13% Similarity=-0.032 Sum_probs=54.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 379 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
|.....++.|+..+.+.+... |+. .-|+.-+.++.+..+++.+..--.+.++..+ ..+.....|..++..
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--------P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~-N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-NLVKAHYFLGQWLLQ 90 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-HHHHHHHHHHHHHHh
Confidence 444556788888888877776 765 4456666777888888888888888888776 556666666666666
Q ss_pred cCCCcHHH
Q 011226 458 AGRTSPVM 465 (490)
Q Consensus 458 ~g~~~~~~ 465 (490)
...+.+++
T Consensus 91 s~~~~eaI 98 (284)
T KOG4642|consen 91 SKGYDEAI 98 (284)
T ss_pred hccccHHH
Confidence 66655554
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.72 E-value=21 Score=24.15 Aligned_cols=52 Identities=8% Similarity=-0.034 Sum_probs=27.7
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhhCCHHHHHHH
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKT--VSDQAIHLDLVAKVQGIDAAENY 112 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 112 (490)
.-++.| ..++.++|+..++...+.-..+. ..++..++.+++..|++.+++++
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433 56666777777776654432221 22444556666666666655443
No 380
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.12 E-value=69 Score=27.35 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=52.5
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchh-HHHHHHHHHhcCChh
Q 011226 239 YVEAGLFEKAERALKELENRNAHRDLS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS-YLNMIQVLVNLKDLP 316 (490)
Q Consensus 239 ~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 316 (490)
|.....++.|...|.+... +.|+.. -|+.-+-++.+..+++.+..=-...++ +.|+..- -..+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3344456666665555544 234442 233344555566666655543333333 3333322 123344445555666
Q ss_pred hHHHHHHHHH----hcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 011226 317 GAEKCFKEWE----SGCATYDIRVTNVMIGAYAKEGRLENAEELKE 358 (490)
Q Consensus 317 ~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 358 (490)
.|+..+.+.. ...+.+...+...|..+--..-...+...+.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 6666665542 22333333444444443333333333444433
No 381
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.91 E-value=47 Score=25.84 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCcchHHHHHHHHHhcCC-CCcHHHHHHHHHHCCCCCCHhhHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNL-----GFSSMPFNSLMTLYAKTGH-PEKIPAIIQEMKASSIMPDSYTYNV 198 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ 198 (490)
..|.++.-....+++.-.+.+++.+..... ..+..+|+.++.+..+... ---+..+|+-+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 346666666666677766666666532110 1344556666666544433 2234555566655556666666666
Q ss_pred HHHHHHHc
Q 011226 199 WMRALAAV 206 (490)
Q Consensus 199 l~~~~~~~ 206 (490)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66655443
No 382
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.90 E-value=1.1e+02 Score=29.14 Aligned_cols=125 Identities=8% Similarity=-0.091 Sum_probs=78.7
Q ss_pred HHHHHHhccCCchHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcC
Q 011226 60 DTLKKLRDRKLYYPALKLSENM-EKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~ 137 (490)
.-|..-...|++..|-+-+... ......|+. .......+...|+++.+.+.+..... ......+...+++...+.|
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence 3344445567777665544444 333223433 33344566778999999988877766 3345566778888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
+++.|..+-+-|+...+ -+...........-..|-++++.-.+++....
T Consensus 372 r~~~a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 372 RWREALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hHHHHHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999999888887665 33333333333333456667777777766543
No 383
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.48 E-value=38 Score=26.43 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 011226 40 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGI 106 (490)
Q Consensus 40 ~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 106 (490)
.++.+.+.+.|..+++.-. .++..+.+.++.-.|.++++++.+.+...+..|....++.+...|-+
T Consensus 6 ~~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 4455666667777666543 35666666777788899999998887666677766777777777654
No 384
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.29 E-value=85 Score=31.18 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=51.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhc--CCCCChhhHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCCHHHHHHH
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESG--CATYDIRVTNVMIGAYAKEGRLE------NAEELKERARRRGADPNAKTWEIF 375 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~p~~~~~~~l 375 (490)
+++.+|...|++-.+.++++.+... |-+.-...+|..|+.+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6778888888888888888777643 22223445667777777777554 2333333332 44566777666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011226 376 SDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
+.+-..--+-.-...++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 6554443333333344444433
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.93 E-value=22 Score=29.34 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
...+..++..+.. |++.+|..++.++...|+.++|.+..+++...-|
T Consensus 129 ~~~~~a~~~l~~~--------P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 129 AYIEWAERLLRRR--------PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHhC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555555554 9999999999999999999999999999998876
No 386
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=66.93 E-value=1.1e+02 Score=28.60 Aligned_cols=182 Identities=19% Similarity=0.192 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCCC----CCCHhHHHHHHHHHHHcCCHHH-----HHHHHHHHHhCCCCCCcchHH
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPET----SKNHLTYGSLLNCYCKELMTEK-----AEALLEKMKELNLGFSSMPFN 162 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~ 162 (490)
.|..+.+.=-++.-.+..+++.+.+... .|-..-..++|..||+.++.+- -+.+++-+....+ |....||
T Consensus 57 ~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~fN 135 (669)
T KOG3636|consen 57 DWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-PRSDEFN 135 (669)
T ss_pred hHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-Ccchhhh
Confidence 3444443333333445566666766651 1222245677888888876653 3456666666555 6666776
Q ss_pred HHHHH---HHhcCC--CCcHHHHHHHHH------------HCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 011226 163 SLMTL---YAKTGH--PEKIPAIIQEMK------------ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV 225 (490)
Q Consensus 163 ~l~~~---~~~~~~--~~~a~~~~~~~~------------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 225 (490)
..-.. |.-.+. -.....+|+-+. ...+.||.++.|-+...++..-..+-...+++-..+.+ .
T Consensus 136 ~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-D 214 (669)
T KOG3636|consen 136 VFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-D 214 (669)
T ss_pred hhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-C
Confidence 54432 322221 122333333332 23578898888888888877778888888888888875 3
Q ss_pred CCCHHHHHHHH---HH-----HHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh
Q 011226 226 AADWTTFSNLA---SI-----YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 276 (490)
Q Consensus 226 ~~~~~~~~~l~---~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (490)
|.-.. +-+++ ++ -.+...-+++.++++.|...--.-|+.-+-.|...|+.
T Consensus 215 PF~vf-fLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 215 PFLVF-FLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred ceehH-HHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHhh
Confidence 33222 22222 11 12344567888888887654333455556666665554
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=66.70 E-value=18 Score=23.26 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
|....-.+|.+|...|++++|.++++++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444556667777777777766666554
No 388
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=65.90 E-value=48 Score=25.87 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=33.7
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 252 LKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
.+.+.+.|++++. --..+++.+...++.-.|.++++.+.+.++..+..|....+..+...|
T Consensus 9 ~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555555443 233455566666666677777777776666555555444445554444
No 389
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.46 E-value=82 Score=26.50 Aligned_cols=130 Identities=15% Similarity=0.076 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG--ADPNAKTWEIFSDY 378 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~ 378 (490)
|....++.+.+.+...+++...+.-.+..+. |...-..+++.||-.|++++|..-++-.-... ..+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445567777888899999888887777665 77778889999999999999988887776532 22334566666654
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH-hcC-ChHHHHHHHHHHHHcCC
Q 011226 379 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE-QEK-DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g-~~~~a~~~~~~~~~~~~ 441 (490)
-. +=++...-+..|+.--.|.+.-...+..+.. ..+ .-+.+..+-+...+..+
T Consensus 82 ea----------~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~ 136 (273)
T COG4455 82 EA----------ARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAP 136 (273)
T ss_pred HH----------HHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCC
Confidence 22 1122333333333222244443444444443 333 33444555556666554
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.40 E-value=48 Score=23.77 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=56.9
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
....++|..+-+++...+-. ...+-..-+..+...|++++|..+.+.+. .||...|.+|-.. +.|.-++...-+.
T Consensus 18 ~HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~--~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC--YPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred chHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC--CchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 34567888888888666521 22222233455667888888888888775 4888888776653 5677777777777
Q ss_pred HHHhCCCCCCcchH
Q 011226 148 KMKELNLGFSSMPF 161 (490)
Q Consensus 148 ~~~~~~~~~~~~~~ 161 (490)
+|...|- |....|
T Consensus 93 rla~sg~-p~lq~F 105 (115)
T TIGR02508 93 RLAASGD-PRLQTF 105 (115)
T ss_pred HHHhCCC-HHHHHH
Confidence 7777664 443333
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.34 E-value=33 Score=28.28 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
..|+..+|..++..+...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555543
No 392
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=64.80 E-value=56 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+..|.+.|.+++|.+++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcC
Confidence 34678888888888888888774
No 393
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.10 E-value=23 Score=22.68 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
.+...++++.+.... -|..-.-.++.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~R--------HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQR--------HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555554432 4555566788999999999999999988765
No 394
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.97 E-value=1.1e+02 Score=27.01 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----ccCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHhCCCCCc
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELEN----RNAHRDLSAYQF-LITLYGQTGNLSEVYRIWRSLRLAFPNTAN 299 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 299 (490)
......++..+...|++.++.+.+.++..+... .|.+.|....-. |.-.|....-+++-++..+.|.+.|...+.
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 444566677788888888888888877766543 344444432222 222334444456677777777777654332
Q ss_pred h----hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 300 I----SYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 300 ~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
. +|.-+ .+....++.+|-.++.....
T Consensus 191 rNRyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 191 RNRYKVYKGI--FKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhhHHHHHHH--HHHHHHhhHHHHHHHHHHhc
Confidence 2 23222 12234566677766666544
No 395
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.93 E-value=1.1e+02 Score=26.86 Aligned_cols=199 Identities=12% Similarity=0.029 Sum_probs=119.5
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHhhCCHHHHHHHHhhcCC------CCCCHhH
Q 011226 59 GDTLKKLRDRKLYYPALKLSENMEKRGMNKTVS-------DQAIHLDLVAKVQGIDAAENYFVDLPE------TSKNHLT 125 (490)
Q Consensus 59 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~ 125 (490)
..+.....+.+++++|+..+..+...|+..+.. +...+...|.+.|+...-.+......+ .+....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 445667788899999999999999888766654 445677888888887766555544332 1223334
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCc-----chHHHHHHHHHhcCCCCcHHHHHHHH----HHCCCCCCHhh
Q 011226 126 YGSLLNCYCKE-LMTEKAEALLEKMKELNLGFSS-----MPFNSLMTLYAKTGHPEKIPAIIQEM----KASSIMPDSYT 195 (490)
Q Consensus 126 ~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~ 195 (490)
..+|+..+-.. ..++.-+.+.....+...+-.. ..-..++..+.+.|++.+|+.+.+.+ ++..-+|+..+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 55555554332 4556666666655543211111 11245788888999999998876544 44455565544
Q ss_pred HHHH-HHHHHHcCChhHHHHHHHHHHHC---CCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHH
Q 011226 196 YNVW-MRALAAVNDISGAERVIEEMKRD---GRVAADWTTFSNLASIY--VEAGLFEKAERALKELEN 257 (490)
Q Consensus 196 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~ 257 (490)
...+ -.+|....++.++..-+...... --+||....---|+++. |...++.-|...|-+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 4333 23566666666666555444321 11566555555555543 344567777777766654
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.61 E-value=52 Score=22.87 Aligned_cols=66 Identities=9% Similarity=0.151 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 430 (490)
+.+++..+.+.|+- +......+-.+--..|+.+.|.+++..+. .| |+ .|..++.++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--------~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--------EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--------Cc--HHHHHHHHHHHcCchhhhh
Confidence 45566666666543 33333333333335567777777777776 55 33 3556666666666655543
No 397
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.43 E-value=1.1e+02 Score=26.16 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=57.0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC------CcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 363 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK------WVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 363 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
.++.-+......++ +...|+..+|+..++........-+.. -.|.+.....++..|. .+++++|.+++.++
T Consensus 188 Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 188 EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAEL 264 (333)
T ss_pred hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHH
Confidence 34444444333333 345566666666665544331000000 2377888888887775 47899999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 437 KKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.+.|. ......+.+.+.+-... .++.+
T Consensus 265 w~lgy-sp~Dii~~~FRv~K~~~-~~E~~ 291 (333)
T KOG0991|consen 265 WKLGY-SPEDIITTLFRVVKNMD-VAESL 291 (333)
T ss_pred HHcCC-CHHHHHHHHHHHHHhcc-HHHHH
Confidence 99999 44445555666554433 34444
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.26 E-value=64 Score=31.96 Aligned_cols=88 Identities=9% Similarity=0.039 Sum_probs=55.2
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCC-C---CCCHhHHHHHHHHHHHcCCHH------HHHHHHHHHHhCCCCCCcchHHHH
Q 011226 95 IHLDLVAKVQGIDAAENYFVDLPE-T---SKNHLTYGSLLNCYCKELMTE------KAEALLEKMKELNLGFSSMPFNSL 164 (490)
Q Consensus 95 ~l~~~~~~~g~~~~a~~~~~~~~~-~---~~~~~~~~~li~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 164 (490)
+++.+|...|++..+.++++.+.. . +.=...+|..|+...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 788888888998888888888766 1 222456788888888888764 3444444433 33477777777
Q ss_pred HHHHHhcCCCCcHHHHHHHHH
Q 011226 165 MTLYAKTGHPEKIPAIIQEMK 185 (490)
Q Consensus 165 ~~~~~~~~~~~~a~~~~~~~~ 185 (490)
+.+...--+-.-.+-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 766544323233334444443
No 399
>PRK14136 recX recombination regulator RecX; Provisional
Probab=60.19 E-value=1.3e+02 Score=26.90 Aligned_cols=63 Identities=8% Similarity=0.044 Sum_probs=40.3
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCC
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMN 87 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 87 (490)
...|.+.|...+.+...+..+|+.+.+.|...+..-...++.... +.+ .-..+-.++.+.|+.
T Consensus 179 e~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~R~--~kk-Gp~rIrqELrQKGId 241 (309)
T PRK14136 179 RAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHRRA--SRV-GSARIVSELKRHAVG 241 (309)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh--hch-hHHHHHHHHHHcCCC
Confidence 456777777777677777788888877777666666555565422 222 234566677777764
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.70 E-value=74 Score=24.07 Aligned_cols=44 Identities=7% Similarity=0.069 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
.+.++|..|...|+ ..--...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~I-----G~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGI-----GTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTT-----STTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCc-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777764 224466777777777777777777777765
No 401
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=59.66 E-value=1.4e+02 Score=27.18 Aligned_cols=123 Identities=13% Similarity=0.050 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR---NGDMKLAVDCLE 393 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~ 393 (490)
.-..++++..+.++. +...+..++..+.+..+.+...+-++++...... +...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 334555555555442 5556666666666666666667777777665222 45556555554432 224555555555
Q ss_pred HHHhc------CCCCCCCCcCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 394 KAIDT------GRGDGGKWVPS-----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 394 ~~~~~------~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+.++. +......-.++ ..++..+...+..+|..+.|..+++-+++.+.
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 54433 10000000011 12233334445689999999999999998654
No 402
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.63 E-value=60 Score=26.15 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=40.8
Q ss_pred HHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHH
Q 011226 46 FLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGID 107 (490)
Q Consensus 46 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 107 (490)
+...|...+..-. .++..+...++.-.|.++++.+.+.+...+..|....++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3444655555544 455555555667788888888888876677777777777887777554
No 403
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.24 E-value=17 Score=27.50 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=17.8
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA 202 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 202 (490)
.|.-..|..+|..|.+.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35556666666666666666653 5555543
No 404
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.12 E-value=80 Score=24.23 Aligned_cols=76 Identities=11% Similarity=0.059 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 011226 366 DPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD 442 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 442 (490)
.++..+--.+..++.+..+ ..+.+.+++++.+... ..-.......|.-++.+.++++.+.++.+.+++..|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~-----~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~- 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAH-----PERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP- 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcC-----cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC-
Confidence 3455555566667766554 5567788888887331 011234445566678888889999888888888887
Q ss_pred CCHHh
Q 011226 443 LGVEV 447 (490)
Q Consensus 443 ~~~~~ 447 (490)
.|..+
T Consensus 103 ~n~Qa 107 (149)
T KOG3364|consen 103 NNRQA 107 (149)
T ss_pred CcHHH
Confidence 44433
No 405
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.98 E-value=1.7e+02 Score=28.04 Aligned_cols=117 Identities=11% Similarity=-0.031 Sum_probs=71.1
Q ss_pred HHHhcCChhHHHHHHHHHH---HcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCCCCCc
Q 011226 343 AYAKEGRLENAEELKERAR---RRGADPNAK-----TWEIFSDYYLRNGDMKLAVDCLEKAID-------TGRGDGGKWV 407 (490)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~---~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~ 407 (490)
.+.-.|++.+|.+++...- +.|...+.. .||.+.-.+.+.|.+.-+..+|.++++ .|.+|.+.+.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4556788888888775432 223221211 234444344566666666666666654 3544332221
Q ss_pred C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 408 P----SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 408 p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
. +-.+.....-.|...|++-.|.+.|.+....-. .++..|-.|..+|....+
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh-~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH-RNPRLWLRLAECCIMALQ 384 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh
Confidence 1 112222334467789999999999999888665 899999999999976544
No 406
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.29 E-value=1.5e+02 Score=26.75 Aligned_cols=135 Identities=19% Similarity=0.151 Sum_probs=66.5
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----ccCCCCH
Q 011226 189 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN----RNAHRDL 264 (490)
Q Consensus 189 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~ 264 (490)
++.|...++.+..+ +..++++-.+..+...+.-+...-...+......||+.|+.+.|++.+..... .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44444444444332 22233343444444444311333345566677788888888888877765543 3555565
Q ss_pred HHHHHHHHH-HHhcCChhHHHHHHHHHHHhCCCCCch----hHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 265 SAYQFLITL-YGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 265 ~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
..+..-+.. |....-+.+-++..+.+.+.|...+.. +|..+ .|....++.+|-.+|-....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 544432222 222222344444445555555433222 33322 23345677777777766544
No 407
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.19 E-value=57 Score=23.01 Aligned_cols=53 Identities=9% Similarity=-0.079 Sum_probs=26.8
Q ss_pred hccCCchHHHHHHHHHHhC----CCCCC--h--hhHHHHHHHHHhhCCHHHHHHHHhhcCC
Q 011226 66 RDRKLYYPALKLSENMEKR----GMNKT--V--SDQAIHLDLVAKVQGIDAAENYFVDLPE 118 (490)
Q Consensus 66 ~~~~~~~~A~~~~~~~~~~----~~~~~--~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 118 (490)
.+.|++..|++.+...-+. +.... . .....+.......|+.++|.+.+++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4578888886666655332 21111 1 1111223344455666666666666554
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=56.11 E-value=1.4e+02 Score=26.93 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGA-DPNAK--TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SET 412 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~ 412 (490)
|--=..-|.+..++..|...|.+.++... .||.. .|+.=..+-...|++..|+.=....+... |+ ...
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--------P~h~Ka 155 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--------PTHLKA 155 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--------cchhhh
Confidence 33334445555555555555555554322 22221 23333333344455555555555554443 33 233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
|.-=..++....++++|....++.
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhhh
Confidence 333334444555555555555544
No 409
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=55.94 E-value=1.3e+02 Score=25.56 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=28.6
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC---ChhhH--HHHHHHHHhhCCHHHHHHHHhhcCC
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK---TVSDQ--AIHLDLVAKVQGIDAAENYFVDLPE 118 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 118 (490)
+....++.++-.|.-...+.+|-+.|..- .|+.| +...+ ..-+......|+++.|.+....+..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P 92 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP 92 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh
Confidence 34444555555554444454544444332 22222 22211 2234444555666666655555544
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.65 E-value=23 Score=31.25 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=29.5
Q ss_pred CCHh-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011226 121 KNHL-TYGSLLNCYCKELMTEKAEALLEKMKELNLGF 156 (490)
Q Consensus 121 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (490)
|+.. .|+..|....+.||+++|++++++..+.|+.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 4444 57889999999999999999999999988643
No 411
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=55.62 E-value=40 Score=21.94 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=42.7
Q ss_pred CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 406 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 406 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
+.|....++.++..+++-.-.++++..+.++.+.|. .+..+|..-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 447778899999999999999999999999999988 788888887777766
No 412
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=55.48 E-value=1.7e+02 Score=26.75 Aligned_cols=64 Identities=13% Similarity=0.014 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
.++...++.++++.- |+ ...|.+++......|.++..+.+|++++..|..|-...-..+++.+-
T Consensus 119 ~eei~~~L~~li~~I--------P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNI--------PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 457777888887764 66 35678888889999999999999999999999888888888888876
No 413
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=55.41 E-value=1.7e+02 Score=27.57 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--C-----CCCCcchHHHHHHHHHhcCCCCcHHHHHHHHH
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKEL--N-----LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMK 185 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~--~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 185 (490)
..|++.++-.||+..|+++++.+.-. + ..-.+.+|-.+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666554211 0 11234555556666666677777777766653
No 414
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.40 E-value=2.4e+02 Score=28.69 Aligned_cols=174 Identities=12% Similarity=0.088 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhCCCCCChhhH-HHHHHHHHhhCCHHHHHHHHhhcCC---CCCCHhHHHHHHHHHHHc---------CC-
Q 011226 73 PALKLSENMEKRGMNKTVSDQ-AIHLDLVAKVQGIDAAENYFVDLPE---TSKNHLTYGSLLNCYCKE---------LM- 138 (490)
Q Consensus 73 ~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~li~~~~~~---------~~- 138 (490)
..+...+.+-+..-.|+..+- ..+-..|...|++++|++.--.... ..++...+.+++.-|... +.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNP 120 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 444444444333323333322 3334567777888888887665543 445555555555443322 00
Q ss_pred ------HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHH-HHCCCCCCHhhHHHHHHHHHHcCC-hh
Q 011226 139 ------TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM-KASSIMPDSYTYNVWMRALAAVND-IS 210 (490)
Q Consensus 139 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~-~~ 210 (490)
-++-..++++|.++.. +..-|-.+|.......+ +.++++. .+..-. ....+.++..+....+ -+
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl--~d~e~~~aiGia~E~~r----ld~ie~Ail~~d~~--~~~~~yll~l~~s~v~~~e 192 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCL--DDNEYKQAIGIAFETRR----LDIIEEAILKSDSV--IGNLTYLLELLISLVNNRE 192 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhh--hhhHHHHHHhHHhhhhh----HHHHHHHhcccccc--chHHHHHHHHHHHHHhhHH
Confidence 1223334444444332 11122222222222222 2233331 121111 1233334444333332 33
Q ss_pred HHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 211 GAERVIEEMKRDGR--VAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 211 ~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
--.++++.+.+.-. -.|| |..+..+|.-..+.+.+.++++++.+
T Consensus 193 fR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred HHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 33444444444310 2343 33577788888888888888888877
No 415
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=55.08 E-value=1.1e+02 Score=24.71 Aligned_cols=127 Identities=10% Similarity=0.087 Sum_probs=80.5
Q ss_pred cchhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011226 20 HLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDL 99 (490)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (490)
.+...|...|...+.+...+..++..+.+.|...+..-....+..-.+.| ..-..+...+.+.|+ +..+-...+..
T Consensus 35 rse~ELr~kL~k~~~~~~~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~ 110 (174)
T COG2137 35 RSEKELRRKLAKKEFSEEIIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALEL 110 (174)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhc
Confidence 44557888888888888889999999988888888877777777777766 445566777788884 44444555555
Q ss_pred HHhhCCHHHHHHHHhhcCC---CCCCHhHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 011226 100 VAKVQGIDAAENYFVDLPE---TSKNHLTYGSLLNCYCKEL-MTEKAEALLEKMK 150 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~ 150 (490)
+......+.|..++..... .+++..-...+...+...| .++.+..++..+.
T Consensus 111 ~~~~~~~~~a~~~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~ 165 (174)
T COG2137 111 IDEEDEQERARKVLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAE 165 (174)
T ss_pred cchHHHHHHHHHHHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 5555556666666555333 1244444444444444443 3444444544443
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=53.54 E-value=77 Score=22.35 Aligned_cols=74 Identities=16% Similarity=0.111 Sum_probs=43.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHhHHHHH
Q 011226 379 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-LGVEVFEPLI 452 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 452 (490)
..+.|++..|.+.+.+..+..... ..+. ....-.+.......|++++|...+++.++.-.+ .|..+.....
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~---~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQS---NNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhc---ccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 357788888877666665553211 0011 222334555677899999999999998874321 3444444444
Q ss_pred HHH
Q 011226 453 RTY 455 (490)
Q Consensus 453 ~~~ 455 (490)
..+
T Consensus 85 ~~~ 87 (94)
T PF12862_consen 85 SWL 87 (94)
T ss_pred HHH
Confidence 333
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.44 E-value=30 Score=29.16 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=49.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 378 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
...+.++.+.|.+++.+....- |. ...|.-+...-.+.|+.+.|.+.|++.++.+| +|..
T Consensus 4 ~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp-~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP-EDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc-cccc
Confidence 3457788999999999998875 44 77888888888999999999999999999887 4433
No 418
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=53.25 E-value=1.3e+02 Score=24.80 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=8.4
Q ss_pred HHhcCCCCcHHHHHHHH
Q 011226 168 YAKTGHPEKIPAIIQEM 184 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~ 184 (490)
....|++++|..-++++
T Consensus 39 ~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 39 LLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 34445555555555444
No 419
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=52.95 E-value=56 Score=21.00 Aligned_cols=48 Identities=13% Similarity=0.046 Sum_probs=24.2
Q ss_pred HhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----hhCCHHHHHHH
Q 011226 65 LRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA-----KVQGIDAAENY 112 (490)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~a~~~ 112 (490)
+...|++-+|-++++.+-.....+....+..+|.+.+ +.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3456777777777777743322233444444444332 34555555544
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.93 E-value=49 Score=19.87 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=16.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFS 376 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 376 (490)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555544443
No 421
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=52.32 E-value=92 Score=27.69 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=39.5
Q ss_pred HHHhhcCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----------cCCCCcHH
Q 011226 111 NYFVDLPE--TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK----------TGHPEKIP 178 (490)
Q Consensus 111 ~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~ 178 (490)
++++.+.. ..|.-.++.-+.-.+.+.=.+...+.+|+.+... ..-|..|+..|+. .|++....
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~nm 338 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVNM 338 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34444443 4555555555555566666777777777777653 2225555555543 46777666
Q ss_pred HHHHH
Q 011226 179 AIIQE 183 (490)
Q Consensus 179 ~~~~~ 183 (490)
++++.
T Consensus 339 kLLQ~ 343 (370)
T KOG4567|consen 339 KLLQN 343 (370)
T ss_pred HHHhc
Confidence 66653
No 422
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.87 E-value=17 Score=27.57 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHHccCCCC
Q 011226 244 LFEKAERALKELENRNAHRD 263 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~ 263 (490)
.-..|..+|+.|.++|-+||
T Consensus 110 sk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc
Confidence 33344455555555554444
No 423
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.73 E-value=2e+02 Score=27.10 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDG-----RV-AADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
...|++.++-.||+..|+++++.+.-.. .+ .-...++-.+.-+|.-.+++.+|.+.|..+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777766553211 01 1223345556667777777777777776653
No 424
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.72 E-value=2.5e+02 Score=27.68 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=43.5
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hhCCHHHHHHHHhhcCC-----CCCCHhHHHHHHHHHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA-KVQGIDAAENYFVDLPE-----TSKNHLTYGSLLNCYCK 135 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~~~li~~~~~ 135 (490)
+..+.+.|-+.-|+++.+-+.+....-|+.....+|+.|+ +..++.-.+++++.... .-||-..-.+|...|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4455666777777777777766664445666666666665 55666666666655432 23443333444455554
Q ss_pred cCC
Q 011226 136 ELM 138 (490)
Q Consensus 136 ~~~ 138 (490)
...
T Consensus 429 ~~~ 431 (665)
T KOG2422|consen 429 KNE 431 (665)
T ss_pred cCC
Confidence 443
No 425
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=51.72 E-value=1.2e+02 Score=27.37 Aligned_cols=55 Identities=9% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
|.-+..+.|+..+|.+.|+.+.+. ++.. ......|+.++....-+.+...++-+.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445566666666666666554 2211 111234555555555444444444443
No 426
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.68 E-value=1.2e+02 Score=29.52 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=18.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHH
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENM 81 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~ 81 (490)
...++..|.+.+++++|+.++..|
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Confidence 345677888888888888888877
No 427
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.71 E-value=60 Score=23.71 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=27.2
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVA 101 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (490)
++..+.+....++|+++.+.|.++| ..+...-+.|-..+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4555667778889999999998888 455555444444433
No 428
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=50.68 E-value=1.6e+02 Score=25.04 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=7.2
Q ss_pred HHhcCCCCcHHHHHHHH
Q 011226 168 YAKTGHPEKIPAIIQEM 184 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~ 184 (490)
....|+.++|.+..+.+
T Consensus 74 ~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 74 AIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 34444444444444433
No 429
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.35 E-value=2.4e+02 Score=30.31 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=11.2
Q ss_pred HHHHHHHhccCCchHHHHHHH
Q 011226 59 GDTLKKLRDRKLYYPALKLSE 79 (490)
Q Consensus 59 ~~ll~~~~~~~~~~~A~~~~~ 79 (490)
...++.+...++|.+|..+.+
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~R 718 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCR 718 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHH
Confidence 344555555666666555444
No 430
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.35 E-value=3.5e+02 Score=29.07 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=11.8
Q ss_pred HHHHHHHHhcC--CCCcHHHHHHHHHH
Q 011226 162 NSLMTLYAKTG--HPEKIPAIIQEMKA 186 (490)
Q Consensus 162 ~~l~~~~~~~~--~~~~a~~~~~~~~~ 186 (490)
..++.+|++.+ ++++|+....++.+
T Consensus 816 ~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 816 QPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 34444454444 44455555444443
No 431
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.93 E-value=64 Score=27.94 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHH----CCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 163 SLMTLYAKTGHPEKIPAIIQEMKA----SSI-MPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 163 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
.+..-|...|++++|.++|+.+.. .|. .+...+...+..++...|+.+..+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445556667777777777766632 232 234455556677777777777766655444
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.90 E-value=57 Score=28.92 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=34.2
Q ss_pred CcCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 406 WVPSSET-IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 406 ~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
..|+... |+..|....+.||+++|+.+++++.++|...-..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4566554 579999999999999999999999999984333343
No 433
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=49.58 E-value=90 Score=23.88 Aligned_cols=52 Identities=15% Similarity=-0.001 Sum_probs=40.4
Q ss_pred CccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCC
Q 011226 36 DVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMN 87 (490)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 87 (490)
.+.+...++.+...|..-.-..+..++-.+...|+++.|+++.+.+.++|.+
T Consensus 29 LP~Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 29 LPKYLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHhHHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3456666777777777666677888888888999999999999999888853
No 434
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=49.36 E-value=61 Score=20.00 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHH
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR 418 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 418 (490)
.+.-++.+.|++++|.+..+.+++.. |+..-...|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~e--------P~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIE--------PDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT--------TS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhC--------CCcHHHHHHHH
Confidence 45567889999999999999999987 77655544433
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.02 E-value=1.9e+02 Score=27.08 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=39.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCcc--hHHHHHHHHHh--cCCCCcHHHHHHHHHHC
Q 011226 131 NCYCKELMTEKAEALLEKMKELNLGFSSM--PFNSLMTLYAK--TGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 187 (490)
..+...+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999987 544444 45555566554 45567888888877654
No 436
>PRK09462 fur ferric uptake regulator; Provisional
Probab=48.32 E-value=1.2e+02 Score=23.62 Aligned_cols=61 Identities=13% Similarity=0.050 Sum_probs=37.4
Q ss_pred HHHHhcCCCCHHhHHHHHHHHhcc-CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 011226 45 QFLKSKKRVFKWEVGDTLKKLRDR-KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGI 106 (490)
Q Consensus 45 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 106 (490)
.+...|...+..-. .++..+... +..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34445555554433 234444443 45677888888887777666677766777777777654
No 437
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=48.25 E-value=1.3e+02 Score=23.46 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCC-----CCCchhHHHHHHHHHhcCC-hhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFP-----NTANISYLNMIQVLVNLKD-LPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
+.++.-....++....+.+++.+..... ..+..+|.+++.+.++..- .-.+..+|..+++.+.+++..-|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444444444555555555444421100 1123344444444433333 223344444444444444555555555
Q ss_pred HHHHh
Q 011226 342 GAYAK 346 (490)
Q Consensus 342 ~~~~~ 346 (490)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 44443
No 438
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.18 E-value=15 Score=32.82 Aligned_cols=90 Identities=17% Similarity=0.039 Sum_probs=43.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHh
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYY--LRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQ 422 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 422 (490)
..|.++.|++.|...++. .|....+..- ++- .+.++...|++=+....+.. || ..-|-.-..+-..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~k-r~sv~lkl~kp~~airD~d~A~ein--------~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAK-RASVFLKLKKPNAAIRDCDFAIEIN--------PDSAKGYKFRGYAERL 194 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhccc-ccceeeeccCCchhhhhhhhhhccC--------cccccccchhhHHHHH
Confidence 345566666666655542 3333221000 000 12334455555555555544 43 2333333444455
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH
Q 011226 423 EKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
.|++++|...|....+++..+...
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEANS 218 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHHH
Confidence 667777777777777766643333
No 439
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=47.96 E-value=1.4e+02 Score=23.63 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=47.2
Q ss_pred cchhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC
Q 011226 20 HLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK 88 (490)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 88 (490)
.+...+.+.|...|.+...+..+++.+...|...+..-....+..... ....-..+-..+.+.|+.+
T Consensus 26 ~s~~el~~kL~~kg~~~~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~--~~~g~~~I~~~L~~kGi~~ 92 (157)
T PRK00117 26 HSRAELRRKLAAKGFSEEVIEAVLDRLKEEGLLDDERFAESFVRSRAR--KGYGPRRIRQELRQKGVDR 92 (157)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCchHHHHHHHHHHcCCCH
Confidence 345577888888888888899999999888887776555556666522 2234556677788888643
No 440
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.95 E-value=1.2e+02 Score=22.95 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=20.3
Q ss_pred HHHHHHhhcCC---CCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 108 AAENYFVDLPE---TSKNHLTYGSLLNCYCKELMTEKAEALLEK 148 (490)
Q Consensus 108 ~a~~~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 148 (490)
.+.++|..|.. ...-...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 45555554444 222344555555555555666666655543
No 441
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.80 E-value=1.9e+02 Score=27.71 Aligned_cols=108 Identities=13% Similarity=-0.021 Sum_probs=68.3
Q ss_pred HHHHcCCHHHHHHHHHHHHh---CCCCCC-----cchHHHHHHHHHhcCCCCcHHHHHHHHH-------HCCCCCCH---
Q 011226 132 CYCKELMTEKAEALLEKMKE---LNLGFS-----SMPFNSLMTLYAKTGHPEKIPAIIQEMK-------ASSIMPDS--- 193 (490)
Q Consensus 132 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~p~~--- 193 (490)
.+...|++.+|.+++...-- .|...+ -..||.|.-...+.|.+.-+..+|.... +.|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34557899999888765321 121111 1233555555556666666666665554 34655532
Q ss_pred --------hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc
Q 011226 194 --------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA 242 (490)
Q Consensus 194 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (490)
.+|| ..-.+...|++-.|.+.|....+. +..++..|-.|..+|...
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 2233 233567889999999999998887 788888998998888753
No 442
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=46.44 E-value=68 Score=22.61 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=6.9
Q ss_pred HHHHHHhhCCHHHHHH
Q 011226 96 HLDLVAKVQGIDAAEN 111 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~ 111 (490)
++..+.+.++++-+..
T Consensus 71 ~L~~L~~~~RF~l~~~ 86 (94)
T PF13877_consen 71 ILEALSKVKRFDLAVM 86 (94)
T ss_pred HHHHhcCCCCHHHHHH
Confidence 3344444444444443
No 443
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.45 E-value=2.1e+02 Score=25.02 Aligned_cols=171 Identities=8% Similarity=0.068 Sum_probs=96.4
Q ss_pred CCCCChhhHHHHHHHHH-hhCCHHHHHHHHhhcCCCCCCH-----hHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCC
Q 011226 85 GMNKTVSDQAIHLDLVA-KVQGIDAAENYFVDLPETSKNH-----LTYGSLLNCYCKELMTEKAEALLEKMKEL---NLG 155 (490)
Q Consensus 85 ~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~ 155 (490)
+-.||+..-+..-..-+ +..+.++|+.-|....+..+.. .+...+|..+.+.+++++..+.+.+++.. .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 34566655444332222 3456788888888777633332 23455677888888888888888877531 111
Q ss_pred --CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCCCHh----hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC
Q 011226 156 --FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPDSY----TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD 228 (490)
Q Consensus 156 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 228 (490)
-+..+.|++++......+.+-...+|+.-.+. .-.-+.. |-.-|...|...|++....+++.++.... ...+
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC-q~ed 179 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC-QTED 179 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh-cccc
Confidence 23345566776666666665555555543321 0001222 22446666777777777777777776653 1111
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 229 -----------WTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 229 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
...|..-|..|....+-.+-..++++..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 1235555666666666666666666553
No 444
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.28 E-value=3.2e+02 Score=27.02 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=92.2
Q ss_pred cCChhHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-------HHHHccCCC------
Q 011226 206 VNDISGAERVIEEMKRDG----------RVAADWTTFSNLASIYVEAGLFEKAERALK-------ELENRNAHR------ 262 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-------~~~~~~~~~------ 262 (490)
...++++...|...+... +.|..+.+.-.+...+...|+.+.|..+++ ......+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 344667777776666541 123334445556677777887765555544 443333322
Q ss_pred -------CHHHHHH---HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH-hcCChhhHHHHHHHHHhc---
Q 011226 263 -------DLSAYQF---LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV-NLKDLPGAEKCFKEWESG--- 328 (490)
Q Consensus 263 -------~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~--- 328 (490)
|...|-+ -+..+.+.|.+..|+++-+.+....+.-|+.....+|+.|+ +..++.-.+++++.....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 2222322 24556778999999998888887766656777777777765 677788788887776432
Q ss_pred CCCCChhhHHHHHHHHHhcCC---hhHHHHHHHHHHH
Q 011226 329 CATYDIRVTNVMIGAYAKEGR---LENAEELKERARR 362 (490)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~ 362 (490)
..-||-..-.+|...|.+... -..|...+.++.+
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 234454444455556665544 2345555554443
No 445
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.24 E-value=2e+02 Score=24.74 Aligned_cols=62 Identities=8% Similarity=0.011 Sum_probs=43.0
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-hCCHHHHHHHHhhcCC
Q 011226 57 EVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK-VQGIDAAENYFVDLPE 118 (490)
Q Consensus 57 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 118 (490)
.+..+++..-+.++++++.+.++.+...+...+..-.+.+..+|-. -|....+++++..+..
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3455677778889999999999999888877777777777766643 3556666666665544
No 446
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.21 E-value=35 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCCH
Q 011226 208 DISGAERVIEEMKRDGRVAADW 229 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~ 229 (490)
|++.|...|.++...|.+|++.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 7778888888887766566654
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.12 E-value=1.2e+02 Score=22.19 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666667777777777777766654
No 448
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.48 E-value=2.4e+02 Score=25.33 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=39.1
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----------cCCHHH
Q 011226 178 PAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----------AGLFEK 247 (490)
Q Consensus 178 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 247 (490)
.++++.+...++.|.-..|.-+.-.+.+.=.+...+.+++.+.... .. |..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4556666666666666666555555555556666666666666542 11 3334444432 466666
Q ss_pred HHHHHHH
Q 011226 248 AERALKE 254 (490)
Q Consensus 248 A~~~~~~ 254 (490)
..++++.
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 6665544
No 449
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=44.27 E-value=2.4e+02 Score=25.43 Aligned_cols=82 Identities=10% Similarity=-0.029 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011226 209 ISGAERVIEEMKRDGRV---AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
.+.|.+.|+.....+.. ..++.....+.....+.|+.+.-..+++.... ..+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 34556666666653211 23444444555555555554444444443333 2345555666666666666666666
Q ss_pred HHHHHHHh
Q 011226 286 IWRSLRLA 293 (490)
Q Consensus 286 ~~~~~~~~ 293 (490)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 66666554
No 450
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.94 E-value=3.1e+02 Score=26.48 Aligned_cols=146 Identities=16% Similarity=0.077 Sum_probs=79.6
Q ss_pred HhcCChhhHHHHHHHHHhcC---CCCCh------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGC---ATYDI------RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW--EIFSDY 378 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~---~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~ 378 (490)
.-.|+..+|++-...|.+.. +.|.. .....+...++..|.++.|..-|....+.--.-|...+ ..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 45789999998888887643 22111 11222333345678899999999888764222233222 234456
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----CHHhH
Q 011226 379 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE-----TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL-----GVEVF 448 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~ 448 (490)
|.+.|+.+.-.++++.+-..+. ...+.. .+..-.-.....+++.+|..++.+-++..-.. ..-..
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt-----~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~L 488 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNT-----NSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSL 488 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCC-----CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence 7788777666666655432221 111111 11111122346899999999998877643111 12233
Q ss_pred HHHHHHHHhcCC
Q 011226 449 EPLIRTYAAAGR 460 (490)
Q Consensus 449 ~~l~~~~~~~g~ 460 (490)
..|...+...|+
T Consensus 489 vLLs~v~lslgn 500 (629)
T KOG2300|consen 489 VLLSHVFLSLGN 500 (629)
T ss_pred HHHHHHHHHhcc
Confidence 344445555555
No 451
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=43.73 E-value=1.1e+02 Score=21.42 Aligned_cols=34 Identities=32% Similarity=0.310 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
.|.|...-..+...+...|++++|++.+-.+.+.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555555556666666666666665555543
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.38 E-value=1.3e+02 Score=26.15 Aligned_cols=63 Identities=24% Similarity=0.273 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 373 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
..+...|.+.|++++|.++|+.+...-.+++- ..+...+...+..++...|+.+....+.=++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW-~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGW-WSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566788999999999999988644211000 1234566677777888888888877665444
No 453
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=43.36 E-value=1.7e+02 Score=23.50 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=18.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 341 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
+..+...++.-.|.++++.+.+.+...+..|..-.+..+.+.|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333444445555555554444444443333334444433
No 454
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.23 E-value=2e+02 Score=24.25 Aligned_cols=94 Identities=17% Similarity=0.103 Sum_probs=54.0
Q ss_pred cCChhHHHHHHHHHHH----cCCCCCHH--HHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 347 EGRLENAEELKERARR----RGADPNAK--TWEIFSDYYLRNGD-------MKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~----~~~~p~~~--~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+++|.+.|.-+.- .+..|... .+.-+...|-..|+ ...|.+.|.+..+....|.... .+....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~-~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGM-DEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCc-hHHHHH
Confidence 3445555555544431 12233322 23333444555555 3467777877777653221111 223444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
-.+.....+.|+.++|.+.|.++...+-
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 5666778899999999999999998654
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.78 E-value=1.3e+02 Score=21.98 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHhHHHHHHHHHhcCC
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKA-----VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~ 460 (490)
-|..|+..|...|..++|.+++.+..+. ...+.......++..+.+.|.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 4778888888999999999999888771 111222233334666666555
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.72 E-value=1e+02 Score=31.78 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=83.3
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCc
Q 011226 97 LDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEK 176 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (490)
...+..+|+++.|++.-..+. +..+|..|.....++|+.+-|+..|++... |+.|--.|.-.|+.++
T Consensus 650 F~LaLe~gnle~ale~akkld----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 345667788888888877775 677899999999999999999988888766 3333334555677666
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
-.++.+-.... -|..+ ......-.|+.++-.++++.. | ..| ..|.. -...|.-++|.++.++..
T Consensus 717 L~Km~~iae~r---~D~~~---~~qnalYl~dv~ervkIl~n~---g-~~~--laylt----a~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 717 LSKMMKIAEIR---NDATG---QFQNALYLGDVKERVKILENG---G-QLP--LAYLT----AAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHHHHhh---hhhHH---HHHHHHHhccHHHHHHHHHhc---C-ccc--HHHHH----HhhcCcHHHHHHHHHhhc
Confidence 66655544322 13222 222223457777777776654 2 222 12211 123577788888888876
Q ss_pred H
Q 011226 257 N 257 (490)
Q Consensus 257 ~ 257 (490)
+
T Consensus 781 ~ 781 (1202)
T KOG0292|consen 781 K 781 (1202)
T ss_pred c
Confidence 5
No 457
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.71 E-value=1.2e+02 Score=21.67 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHH
Q 011226 428 GAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 428 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~ 481 (490)
..++.++++...+...-+.....|.-.|.+.|+...++.+.-.+..+.|...++
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 344556666555543444555566667777777666666665566677777665
No 458
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.46 E-value=1.7e+02 Score=27.30 Aligned_cols=58 Identities=9% Similarity=-0.091 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCCCcHHHHHHHH
Q 011226 127 GSLLNCYCKELMTEKAEALLEKMKEL--NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM 184 (490)
Q Consensus 127 ~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 184 (490)
--|++.+.-.|+.....+.++.|... |-.|...+--.+.-+|.-.|++.+|.+.|-..
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 34555566667766666666655442 22222211123344455556666666666544
No 459
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.46 E-value=3.1e+02 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=10.0
Q ss_pred CCCCcHHHHHHHHHHCCCCCC
Q 011226 172 GHPEKIPAIIQEMKASSIMPD 192 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~p~ 192 (490)
.+.+.|+.++..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 344445555555555444444
No 460
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.22 E-value=2.9e+02 Score=25.70 Aligned_cols=103 Identities=13% Similarity=0.087 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HccC------------------CCCHHHHHH---HHHHHHh
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKELE-------NRNA------------------HRDLSAYQF---LITLYGQ 276 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~------------------~~~~~~~~~---l~~~~~~ 276 (490)
.|-...++..+...+...|+.+.|.+++++.. ...+ .-|...|.+ .|..+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 45555555566666666666655555554431 1111 013333333 3556778
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH-hcCChhhHHHHHHHHHh
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV-NLKDLPGAEKCFKEWES 327 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 327 (490)
.|-+..|+++-+-+....+.-|+.....+|+.|+ +.++++--.++.+....
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 8888888888888888776656766666777665 56777777777776544
No 461
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.14 E-value=1e+02 Score=20.96 Aligned_cols=29 Identities=31% Similarity=0.326 Sum_probs=20.5
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChh
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVS 91 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 91 (490)
+..+.+..-.++|+++++.+.++| ..+..
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 444556677788999998888887 44544
No 462
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.73 E-value=3e+02 Score=25.79 Aligned_cols=55 Identities=11% Similarity=-0.039 Sum_probs=33.5
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCch--hHHHHHHHHH--hcCChhhHHHHHHHHHhc
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANI--SYLNMIQVLV--NLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 328 (490)
.+.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888887765 433333 2344444443 355667777777766543
No 463
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.63 E-value=73 Score=30.20 Aligned_cols=104 Identities=14% Similarity=-0.012 Sum_probs=50.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
..+...++++.|..++.+.++..+. ....|..=..++.+.+++..|..=+....+..+. ....|-.=..++...+++.
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpn-ca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPN-CAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCc-ceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 3344556666676666666654321 2222333335666666666666655555554332 1222222223333444455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYY 379 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 379 (490)
+|...|+.... +.|+..-....+.-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 55555554444 355555555444443
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.61 E-value=2.3e+02 Score=24.39 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcC
Q 011226 351 ENAEELKERARR---RGADPNAKTWEIFSD-----YYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 351 ~~a~~~~~~~~~---~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+.|.+.|+...+ ..++|...++-.++- .|-..|+.++|+++.++..+..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 456666666543 225566555433332 3456899999999888776653
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=41.55 E-value=78 Score=23.32 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=18.2
Q ss_pred ccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC
Q 011226 67 DRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG 105 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 105 (490)
..+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 12 ~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 12 ESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred hCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 333444455555555444444444444444455544443
No 466
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.34 E-value=3.2e+02 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.017 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
.++.+.|+.++..|.+.|..|....-..++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~ 272 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVI 272 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 366777777777777766655543333333
No 467
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.15 E-value=60 Score=17.57 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH
Q 011226 384 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM 417 (490)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 417 (490)
.++.|..+|++.+... |++.+|....
T Consensus 2 E~dRAR~IyeR~v~~h--------p~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVH--------PEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhC--------CCchHHHHHH
Confidence 5788999999998875 8887776543
No 468
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=41.07 E-value=2.1e+02 Score=26.11 Aligned_cols=64 Identities=11% Similarity=-0.062 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCCCCCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 011226 106 IDAAENYFVDLPETSKNH----LTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYA 169 (490)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (490)
.+++..+++.+...-|+. ..|-.++......|.++..+.+|++....|..|-...-.++++.+-
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 345666666555533443 3567777777777777777777777777777666666666665544
No 469
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.68 E-value=2e+02 Score=23.51 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCC-CCCCHh--------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 011226 106 IDAAENYFVDLPE-TSKNHL--------TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 106 ~~~a~~~~~~~~~-~~~~~~--------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (490)
++.|+.+|+.+.+ .+++.. .-...+..|.+.|.+++|.+++++.... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 4567777777666 222110 1223345677777788887777777663 444444444433333
No 470
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.56 E-value=67 Score=23.91 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=22.6
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG 105 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 105 (490)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 344444444455556666666555545555555555555555554
No 471
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.55 E-value=2.8e+02 Score=25.04 Aligned_cols=109 Identities=9% Similarity=-0.022 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHCCC----CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011226 174 PEKIPAIIQEMKASSI----MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE 249 (490)
Q Consensus 174 ~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 249 (490)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... .+......++.+.+...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~----~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS----TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT----STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc----CCHHHHHHHHHhhhccCCHHHHH
Confidence 4577778888776422 334555566667777777766655555555443 45666778888888888888888
Q ss_pred HHHHHHHHcc-CCCCHHHHHHHHHHHHhcCCh--hHHHHHHH
Q 011226 250 RALKELENRN-AHRDLSAYQFLITLYGQTGNL--SEVYRIWR 288 (490)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~ 288 (490)
++++.+...+ +++ ... ..++.++...+.. +.+++.+.
T Consensus 222 ~~l~~~l~~~~v~~-~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 222 RLLDLLLSNDKVRS-QDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHCTSTS-T-TTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHcCCccccc-HHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 8888888754 432 223 3344444423333 55555544
No 472
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.48 E-value=2.3e+02 Score=27.47 Aligned_cols=106 Identities=7% Similarity=-0.016 Sum_probs=0.0
Q ss_pred hHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 72 YPALKLSENM-EKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMK 150 (490)
Q Consensus 72 ~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 150 (490)
+...+.++.. ...|+..+......++.... |+...|+.+++++........++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~--Gd~RdAL~lLeq~i~~~~~~it~~~V~~~l----------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKGD--GSVRDMLSFMEQAIVFTDSKLTGVKIRKMI----------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--ChHHHHHHHHHHHHHhCCCCcCHHHHHHHh-----------------
Q ss_pred hCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHH
Q 011226 151 ELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 199 (490)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 199 (490)
|+ .+...+..++......+....|+.+++++.+.|..|.......+
T Consensus 244 --g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 244 --GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred --CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
No 473
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=40.32 E-value=1.4e+02 Score=21.55 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=28.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..+...|++++|..+.+.+ ..||...|..+-. .+.|..+++..-+.++...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3455566666666665544 3566666554432 35555555555555555554
No 474
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.09 E-value=2.6e+02 Score=24.53 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 011226 379 YLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~ 398 (490)
|...++...|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 44556677777666665544
No 475
>PRK13456 DNA protection protein DPS; Provisional
Probab=39.91 E-value=2.1e+02 Score=23.48 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=47.8
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHhcC---CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKSKK---RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLD 98 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (490)
...+..||..+|+.+..-..-+..+..++. +.++..+..+|+..... =..|++.|+++.+.-...|+.|+..+..
T Consensus 69 A~~lAeRI~qLGG~P~~~p~~~~~ls~~~~~~~p~d~tdv~~mL~~~L~A--Er~AI~~Y~eii~~~~~kDp~T~~l~~~ 146 (186)
T PRK13456 69 FEALVPRIYELGGKLPRDIREFHDISACPDAYLPENPTDPKEILKVLLEA--ERCAIRTYTEICDMTAGKDPRTYDLALA 146 (186)
T ss_pred HHHHHHHHHHhCCCCCCChHHHhhhhcCccccCCCCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 446777888888743333333334433433 33344677777766544 3467888888854433458888888888
Q ss_pred HHHh
Q 011226 99 LVAK 102 (490)
Q Consensus 99 ~~~~ 102 (490)
.+..
T Consensus 147 IL~d 150 (186)
T PRK13456 147 ILQE 150 (186)
T ss_pred HHHH
Confidence 6654
No 476
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.58 E-value=3.2e+02 Score=25.43 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=41.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 011226 341 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL-RNGDMKLAVDCLEKAID 397 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 397 (490)
|..+.+.|-+..|.++.+-+...+..-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5567778888888888888888665556666666777664 67777777777776554
No 477
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.24 E-value=21 Score=31.98 Aligned_cols=119 Identities=12% Similarity=-0.006 Sum_probs=81.5
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK-TWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 387 (490)
....|.++.|++.|...+...+. ....|..-...+.+.++...|+.=+....+. .||.. .|-.=-.+-...|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 44678899999999988887554 6666766677888889999999888887774 44442 23322334456789999
Q ss_pred HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
|...+....+.+ -+..+-..+-...-..+..++-...+++.++
T Consensus 201 aa~dl~~a~kld--------~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLD--------YDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhcc--------ccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 999999999988 3434433444455555666665555555554
No 478
>PRK09857 putative transposase; Provisional
Probab=38.46 E-value=2.7e+02 Score=24.98 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=31.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN 368 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 368 (490)
.++......++.++..++++.+.+..+. .......+..-+.+.|.-+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~-~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPK-HKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445555455555554443221 222333444445555555566667777776666543
No 479
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.44 E-value=1.9e+02 Score=22.56 Aligned_cols=59 Identities=5% Similarity=0.014 Sum_probs=29.2
Q ss_pred HHHccCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 255 LENRNAHRDLSAYQFLITLYGQT-GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
+...|...+.. -..++..+... +..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 33445544332 22333344433 3455666666666666555555555555555555554
No 480
>PHA03100 ankyrin repeat protein; Provisional
Probab=38.23 E-value=3.8e+02 Score=25.94 Aligned_cols=145 Identities=9% Similarity=0.023 Sum_probs=65.0
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChhh--HHHHHHH-----HHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVSD--QAIHLDL-----VAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCY 133 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~-----~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~ 133 (490)
+...++.|+.+ +++.+.+.|..|+... ....+.. ....|..+-+.-+++.-.. ..++..-.+.|..+.
T Consensus 39 L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~ 114 (480)
T PHA03100 39 LYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAI 114 (480)
T ss_pred hhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHH
Confidence 33444555543 4444455565544321 1233444 5566766666666654333 222222233333332
Q ss_pred H-HcCCHHHHHHHHHHHHhCCCCCCcch--HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhH--HHHHHHHHHcCC
Q 011226 134 C-KELMTEKAEALLEKMKELNLGFSSMP--FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTY--NVWMRALAAVND 208 (490)
Q Consensus 134 ~-~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~ 208 (490)
. ..|+.+-.. .+.+.|..++... -.+.+...+..|. .-.++++.+.+.|..++.... ...+..++..|+
T Consensus 115 ~~~~~~~~iv~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~ 188 (480)
T PHA03100 115 SKKSNSYSIVE----YLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGN 188 (480)
T ss_pred hcccChHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCC
Confidence 2 555554433 3444554333221 1234444455552 234455555666655543221 224455566666
Q ss_pred hhHHHHHH
Q 011226 209 ISGAERVI 216 (490)
Q Consensus 209 ~~~a~~~~ 216 (490)
.+-+.-++
T Consensus 189 ~~iv~~Ll 196 (480)
T PHA03100 189 IDVIKFLL 196 (480)
T ss_pred HHHHHHHH
Confidence 55444333
No 481
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.18 E-value=5e+02 Score=27.27 Aligned_cols=51 Identities=6% Similarity=-0.098 Sum_probs=33.5
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCCCCCH--hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 96 HLDLVAKVQGIDAAENYFVDLPETSKNH--LTYGSLLNCYCKELMTEKAEALLEKMK 150 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~ 150 (490)
+-..|...|+++.|++.-+.- |+. .++..=...|.+.+++..|-+++-++.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 456777788888888776554 232 233444556777788888888887763
No 482
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.13 E-value=3.4e+02 Score=24.76 Aligned_cols=28 Identities=7% Similarity=-0.097 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011226 71 YYPALKLSENMEKRGMNKTVSDQAIHLDL 99 (490)
Q Consensus 71 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (490)
+++++.++++....+. |.++.....|.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa 299 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAA 299 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 4555555555554442 444444444433
No 483
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.56 E-value=1.6e+02 Score=21.59 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=20.6
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 165 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 165 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
+..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333344444555555555555544444444444444444444
No 484
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.53 E-value=1e+02 Score=20.09 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
|....++.++..++...-.+.++..+.+..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 4455566666666666666777777777776652 344555555554444
No 485
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.88 E-value=99 Score=23.00 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
..++..+...+..-.|.++++.+.+.++..+..|.-.-++.+.+.|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 45667777777788999999999988887787777777777777775
No 486
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.18 E-value=3e+02 Score=23.57 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=24.2
Q ss_pred HHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 411 ETIRTFMRHFE---------QEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 411 ~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
..|..+...+. ..++...|...++++..++++-.+.+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~ 215 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKK 215 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHH
Confidence 44555555552 44577889999999998876444433
No 487
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.97 E-value=6.7e+02 Score=27.50 Aligned_cols=176 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcC--------------------------CCCC--hhhHHHHHHHHHhcCChhHHHH
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGC--------------------------ATYD--IRVTNVMIGAYAKEGRLENAEE 355 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------~~~~--~~~~~~li~~~~~~~~~~~a~~ 355 (490)
.+..+|...|+.-+|...|.+....- ..+. ...|...++.+-+.+-.+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHHHcCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChH----
Q 011226 356 LKERARRRGADPNAKT----WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD---- 427 (490)
Q Consensus 356 ~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---- 427 (490)
+-..+++. +.++..+ ++.+.+.....|.+-+|...+-..-... -.......++-.++.+|.++
T Consensus 1005 lA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--------rrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1005 LAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--------RRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred HHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--------HHHHHHHHHHHHHHhccchHHHhh
Q ss_pred --------HHHH-HHHHHHHcCCCCCHHhHHHHHHHHHhcCC-CcHHHHHHHhhCCCCCCHHHHH-HHHHhh
Q 011226 428 --------GAEG-FLEILKKAVDDLGVEVFEPLIRTYAAAGR-TSPVMLRRLKMEKVEVSEASKK-LLEAIC 488 (490)
Q Consensus 428 --------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~m~~~~~~p~~~~~~-~l~~~c 488 (490)
+... +++..-+..+-.....|+.|.-.+...++ ...+....-.+..+..+..+.+ .|.+-|
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~~~~~Lekr~ 1147 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCMTPELLEKRR 1147 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccCCHHHHHHhh
No 488
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=33.44 E-value=1.6e+02 Score=20.31 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=36.8
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAE 110 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 110 (490)
-.+......+.......|+.+.|..+++.+. .+ |+. +..+++++...|.-+-|.
T Consensus 29 ~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~--~~W--f~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 29 CLTAEDKERIQAAENNSGNIKAAWTLLDTLV-RR--DNW--LEPFLDALRECGLGHLAR 82 (84)
T ss_pred cCCHHHHHHHHHHHhcCChHHHHHHHHHHHh-cc--CCh--HHHHHHHHHHcCCHHHHH
Confidence 5666666666666666788888888888887 33 333 667777777777655553
No 489
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.98 E-value=3e+02 Score=23.57 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCC
Q 011226 37 VSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM 86 (490)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~ 86 (490)
+.+...++.+...|....-..+..++-.+...|+++.|+++.+.++.+|.
T Consensus 65 P~Y~p~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 65 PKYLPWVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred cchHHHHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 34455555556555554445666777778888999999999999988885
No 490
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.36 E-value=3.3e+02 Score=23.22 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=59.2
Q ss_pred hHHHHHHHHH--hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011226 301 SYLNMIQVLV--NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 378 (490)
Q Consensus 301 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (490)
.|...++++- ..++++.|.+.+-. +......-..++.++...|+.+.|..+++...-. ..+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH
Confidence 3445555554 45666666666522 1111222345777777788888888888764421 1122222333333
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 379 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---------~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---------RRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---------hHHHHHHHHHHHHHHh
Confidence 66688888887776654421 1346666666665433
No 491
>PRK09857 putative transposase; Provisional
Probab=31.26 E-value=2.7e+02 Score=24.92 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHCCCCCC
Q 011226 164 LMTLYAKTGHPEKIPAIIQEMKASSIMPD 192 (490)
Q Consensus 164 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 192 (490)
+..-+.+.|.-+++.++...|...|+.++
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33333334443455666666666665543
No 492
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.99 E-value=5e+02 Score=25.16 Aligned_cols=363 Identities=11% Similarity=0.072 Sum_probs=189.9
Q ss_pred cCCchHHHHHHHHH--HhCCCCCC-----hhhHHHHHHHHHhhC-CHHHHHHHHhhcCCCCCCHhHH-----HHHHHHHH
Q 011226 68 RKLYYPALKLSENM--EKRGMNKT-----VSDQAIHLDLVAKVQ-GIDAAENYFVDLPETSKNHLTY-----GSLLNCYC 134 (490)
Q Consensus 68 ~~~~~~A~~~~~~~--~~~~~~~~-----~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~-----~~li~~~~ 134 (490)
.++++.|..-++.. +...+ |+ ..++..+.+.+.... .+..+..+++...+...+...| ..|+..+.
T Consensus 60 T~N~elAksHLekA~~i~~~i-p~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~ 138 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSI-PSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHI 138 (629)
T ss_pred hccHHHHHHHHHHHHHHHccc-ccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Confidence 45677777777665 22222 33 246677778887766 7888888888877722232233 34566677
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH------HHhcCCCCcHHHHH---HHHHHCCCCCCHhh-------H-H
Q 011226 135 KELMTEKAEALLEKMKELNLGFSSMPFNSLMTL------YAKTGHPEKIPAII---QEMKASSIMPDSYT-------Y-N 197 (490)
Q Consensus 135 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~---~~~~~~~~~p~~~~-------~-~ 197 (490)
-..++..|.+++.---+.. .+-...|.-++-. .....+..++.++. .++.+. +.+|... | +
T Consensus 139 idkD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~ 216 (629)
T KOG2300|consen 139 IDKDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLV 216 (629)
T ss_pred hhccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHH
Confidence 7889999988854322211 1222233222211 12233444444444 444443 5556432 1 1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC---CCC-----------CCCHHHHHHHHH-------------HHHHcCCHHHHHH
Q 011226 198 VWMRALAAVNDISGAERVIEEMKRD---GRV-----------AADWTTFSNLAS-------------IYVEAGLFEKAER 250 (490)
Q Consensus 198 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-----------~~~~~~~~~l~~-------------~~~~~~~~~~A~~ 250 (490)
.-+.-|...|+...+...++++.+. +.. .|+...+..+.+ .-.-.|-+++|.+
T Consensus 217 lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K 296 (629)
T KOG2300|consen 217 LQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQK 296 (629)
T ss_pred HHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHH
Confidence 1233455678877777777766542 200 112222111111 0112344555555
Q ss_pred HHHHHHHcc----CCC-CHHHHH--------HHHHHHHhcCChhHHHHHHHHHHHh---CCCCCchh-----H-HHHHHH
Q 011226 251 ALKELENRN----AHR-DLSAYQ--------FLITLYGQTGNLSEVYRIWRSLRLA---FPNTANIS-----Y-LNMIQV 308 (490)
Q Consensus 251 ~~~~~~~~~----~~~-~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~-----~-~~l~~~ 308 (490)
+-+++...- ..+ ....++ .++-+-.-.|++.+|++-...|.+- .+.|...- . ..+...
T Consensus 297 ~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGly 376 (629)
T KOG2300|consen 297 YTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLY 376 (629)
T ss_pred HHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhH
Confidence 544443210 011 222222 2222223469999999998888764 22221211 1 223334
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--------HHHH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVT--NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI--------FSDY 378 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~--------l~~~ 378 (490)
++..|.++.|..-|....+.-...|...+ ..+.-.|.+.|+-+.-.++++.+-. |+..++.. ++.+
T Consensus 377 s~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p----~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 377 SHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGP----LNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred hhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCC----CCCCcchHHHHHHHHHHHHH
Confidence 55678899999888887654333344333 3455678888887777776665432 22222211 1222
Q ss_pred H--HhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 379 Y--LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 379 ~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+ ...+++.+|..++.+.++..-. .+-.+...-....|...+...|+..++.+...-..+
T Consensus 453 lfaf~qn~lnEaK~~l~e~Lkmana-ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 453 LFAFKQNDLNEAKRFLRETLKMANA-EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHhccHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHH
Confidence 2 4678999999999988876310 000112223334455566778898888887766554
No 493
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=30.90 E-value=5.1e+02 Score=25.21 Aligned_cols=73 Identities=12% Similarity=-0.075 Sum_probs=48.5
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCC-HhHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRG-MNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKN-HLTY 126 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 126 (490)
-|..-|...+..+.+.+.+.+.-.+|..|...+ ..|+...+... .-+-..-+++.|..+|.......|+ +..|
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 377778888887777777999999999995544 34555444332 2333344489999999887774444 4344
No 494
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.62 E-value=1.7e+02 Score=21.25 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=8.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 011226 235 LASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~ 255 (490)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444444444444444443
No 495
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=3.9e+02 Score=23.79 Aligned_cols=99 Identities=13% Similarity=0.162 Sum_probs=47.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCc
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARR----RGADPNAKTWEI-FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV 407 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 407 (490)
...++..+...|++.++.+.+.++..+..+ .|.+.|....-+ +.-.|....-+++-++..+.+.+.|.. |.
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD----We 189 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD----WE 189 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC----HH
Confidence 345566667777777777766666655443 344433322111 111222333355666666777777622 11
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 408 --PSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 408 --p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
....+|.-+. +....++.+|..++-..+
T Consensus 190 RrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 190 RRNRYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hhhhHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 1123333322 233445666665555544
No 496
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=30.43 E-value=1.9e+02 Score=20.17 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhhCCHHHH
Q 011226 37 VSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEK-RGMNKTVSDQAIHLDLVAKVQGIDAA 109 (490)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a 109 (490)
-.+..++..+.. -.+......+.......|+.+.|..+++.+.+ .+ |+. +..++.++-..|.-..|
T Consensus 19 l~p~~il~~l~~---~L~~~~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~--~~w--f~~Fl~AL~~~g~~~la 85 (88)
T cd08812 19 IIPRDILDHLPE---CLTDEDKEQILAEERNKGNIAAAEELLDRLERCDK--PGW--FQAFLDALRRTGNDDLA 85 (88)
T ss_pred cCHHHHHHHHHH---HcCHHHHHHHHHHHhccChHHHHHHHHHHHHHhcc--CCc--HHHHHHHHHHcCCccHH
Confidence 344555555543 45555666666655555888888888888876 33 444 66777787777765444
No 497
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=30.42 E-value=7.9e+02 Score=27.25 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=49.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHH-------HHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC-----C-
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEK-------MKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-----S- 188 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 188 (490)
....|..+...+-+.++.++|+..=.. +...+..-+...|..+.......++...|...+.+.... |
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 344566677777777777777654332 222222223344444444445555666666665555432 1
Q ss_pred -CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 189 -IMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 189 -~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
-+|...+++.+-..+...++.+.|.++.+.+.+
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 122223333333333344555666665555544
No 498
>PRK11619 lytic murein transglycosylase; Provisional
Probab=30.26 E-value=6.1e+02 Score=25.95 Aligned_cols=51 Identities=8% Similarity=-0.178 Sum_probs=35.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
+..+...|....|...+..+... .+......+.....+.|.++.+......
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---------~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---------RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 34566778888888888877764 3445556666666677888877766544
No 499
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.04 E-value=3.8e+02 Score=26.92 Aligned_cols=77 Identities=6% Similarity=0.095 Sum_probs=38.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
+..++..+.++|..-...-+... ...+ ......+.-+|.+..+.+.|.++++++.+.++ .++.+--....+....|
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~--~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDN--YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchh--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhc
Confidence 44555666666655444421000 0000 23344555555666666666666666666665 44444444445555555
Q ss_pred C
Q 011226 460 R 460 (490)
Q Consensus 460 ~ 460 (490)
.
T Consensus 443 ~ 443 (872)
T KOG4814|consen 443 K 443 (872)
T ss_pred c
Confidence 5
No 500
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=30.03 E-value=3.9e+02 Score=23.64 Aligned_cols=199 Identities=14% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC----ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cC
Q 011226 172 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN----DISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AG 243 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 243 (490)
+++..+...+......+ +......+...+.... +...|...|+..-+.| .......|...|.. ..
T Consensus 55 ~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g----~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 55 PDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG----LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc----cHHHHHhHHHHHhcCCCccc
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-----CChh--HHHHHHHHHHHhCCCCCchhHHHHHHHHHh----c
Q 011226 244 LFEKAERALKELENRNAHRDLSAYQFLITLYGQT-----GNLS--EVYRIWRSLRLAFPNTANISYLNMIQVLVN----L 312 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 312 (490)
+..+|..+|+...+.|..+...+...+...|... -.++ .|...+.+.-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---------------ChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011226 313 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---------------RLENAEELKERARRRGADPNAKTWEIFSD 377 (490)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 377 (490)
.+..+|...|....+.|. ......+. .+...| +...|...+......+..........+-.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 280 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKI 280 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q ss_pred HHHhcCC
Q 011226 378 YYLRNGD 384 (490)
Q Consensus 378 ~~~~~g~ 384 (490)
.....+.
T Consensus 281 ~~~~~~~ 287 (292)
T COG0790 281 GLSARGS 287 (292)
T ss_pred HhhCcCC
Done!