Query 011226
Match_columns 490
No_of_seqs 684 out of 2788
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 03:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.4E-38 2.9E-42 309.1 44.9 301 171-482 285-587 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.3E-36 2.1E-40 295.7 46.8 404 35-456 99-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-30 3.6E-35 243.9 47.4 382 61-460 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-28 5.2E-33 229.2 44.6 369 96-480 5-374 (388)
5 4g26_A Pentatricopeptide repea 100.0 6.3E-31 2.2E-35 249.1 24.3 204 177-381 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 5.9E-31 2E-35 249.3 23.9 207 140-347 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 8.3E-26 2.9E-30 219.0 36.8 413 55-481 6-485 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.4E-24 4.9E-29 206.6 36.9 317 121-454 24-372 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 6.5E-24 2.2E-28 202.1 39.4 370 52-460 23-440 (450)
10 3fp2_A TPR repeat-containing p 99.9 2.4E-23 8.2E-28 202.9 35.5 411 54-479 24-496 (537)
11 2gw1_A Mitochondrial precursor 99.9 2E-23 6.7E-28 202.3 33.4 400 35-451 21-489 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2.3E-21 7.9E-26 178.4 38.1 318 125-458 5-353 (359)
13 3fp2_A TPR repeat-containing p 99.9 4.2E-21 1.4E-25 187.0 39.9 392 35-447 40-498 (537)
14 3ieg_A DNAJ homolog subfamily 99.9 2.4E-20 8.3E-25 171.6 37.3 302 54-363 2-335 (359)
15 3hym_B Cell division cycle pro 99.9 1.6E-20 5.3E-25 170.8 33.0 291 156-460 20-320 (330)
16 3hym_B Cell division cycle pro 99.9 2.3E-19 7.8E-24 163.0 33.5 290 189-485 18-310 (330)
17 2xm6_A Protein corresponding t 99.9 5.8E-18 2E-22 162.5 43.0 371 52-457 36-452 (490)
18 1fch_A Peroxisomal targeting s 99.9 7.9E-20 2.7E-24 168.9 28.9 306 137-465 15-350 (368)
19 1fch_A Peroxisomal targeting s 99.9 2.8E-20 9.5E-25 171.9 25.8 272 160-437 66-357 (368)
20 2ooe_A Cleavage stimulation fa 99.9 1.1E-17 3.7E-22 162.3 41.6 398 51-461 9-479 (530)
21 4eqf_A PEX5-related protein; a 99.8 1.8E-19 6.1E-24 166.3 22.7 267 122-394 64-352 (365)
22 2xm6_A Protein corresponding t 99.8 5.9E-16 2E-20 148.5 46.7 356 73-466 25-424 (490)
23 4eqf_A PEX5-related protein; a 99.8 6.2E-19 2.1E-23 162.7 25.0 275 156-435 63-352 (365)
24 4g1t_A Interferon-induced prot 99.8 7E-17 2.4E-21 154.4 36.8 270 53-328 49-363 (472)
25 3cv0_A Peroxisome targeting si 99.8 3.7E-18 1.3E-22 154.8 25.9 272 160-438 23-314 (327)
26 3cv0_A Peroxisome targeting si 99.8 1.3E-17 4.6E-22 151.1 28.2 261 192-465 20-306 (327)
27 2ooe_A Cleavage stimulation fa 99.8 3.8E-16 1.3E-20 151.4 39.8 378 78-472 2-454 (530)
28 3mkr_A Coatomer subunit epsilo 99.8 1.7E-17 6E-22 146.9 26.1 198 192-399 64-265 (291)
29 4g1t_A Interferon-induced prot 99.8 2.1E-16 7E-21 151.2 34.9 362 88-474 49-459 (472)
30 3mkr_A Coatomer subunit epsilo 99.8 1.9E-17 6.4E-22 146.7 25.5 253 63-329 7-265 (291)
31 1b89_A Protein (clathrin heavy 99.8 4.5E-18 1.5E-22 153.8 17.5 283 102-431 15-303 (449)
32 1b89_A Protein (clathrin heavy 99.8 8.1E-17 2.8E-21 145.6 25.3 353 53-460 30-403 (449)
33 3uq3_A Heat shock protein STI1 99.8 2.9E-16 9.9E-21 137.0 26.4 239 193-453 5-255 (258)
34 1xi4_A Clathrin heavy chain; a 99.8 9.9E-15 3.4E-19 147.3 40.2 348 50-460 980-1329(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.8 9.8E-19 3.4E-23 170.7 10.2 150 123-278 127-286 (1134)
36 3u4t_A TPR repeat-containing p 99.7 2.5E-15 8.7E-20 132.2 26.4 255 194-459 4-269 (272)
37 3spa_A Mtrpol, DNA-directed RN 99.7 7.1E-18 2.4E-22 164.7 10.3 119 158-277 127-249 (1134)
38 2h6f_A Protein farnesyltransfe 99.7 6.6E-15 2.2E-19 134.7 29.1 251 193-458 97-366 (382)
39 3uq3_A Heat shock protein STI1 99.7 1.9E-15 6.7E-20 131.7 24.8 238 229-486 5-254 (258)
40 1xi4_A Clathrin heavy chain; a 99.7 3.2E-13 1.1E-17 136.6 42.6 375 35-472 1000-1382(1630)
41 2pl2_A Hypothetical conserved 99.7 2.1E-15 7.1E-20 127.6 22.1 209 191-436 3-211 (217)
42 2pl2_A Hypothetical conserved 99.7 4.1E-15 1.4E-19 125.8 22.7 199 155-360 2-211 (217)
43 3e4b_A ALGK; tetratricopeptide 99.7 1.1E-14 3.6E-19 137.6 27.6 344 60-441 8-389 (452)
44 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.7E-18 121.8 31.9 225 192-441 5-253 (273)
45 2ho1_A Type 4 fimbrial biogene 99.7 5.3E-14 1.8E-18 122.2 27.9 208 230-448 38-246 (252)
46 2q7f_A YRRB protein; TPR, prot 99.7 7.4E-15 2.5E-19 126.8 21.7 211 232-454 26-236 (243)
47 3u4t_A TPR repeat-containing p 99.7 2.3E-14 7.9E-19 126.0 24.6 234 125-363 5-250 (272)
48 2vq2_A PILW, putative fimbrial 99.7 8E-14 2.7E-18 118.6 27.2 210 229-448 8-219 (225)
49 2vq2_A PILW, putative fimbrial 99.7 9.7E-14 3.3E-18 118.1 26.9 204 192-399 7-212 (225)
50 2ho1_A Type 4 fimbrial biogene 99.7 6.7E-14 2.3E-18 121.5 26.2 201 194-399 38-239 (252)
51 2h6f_A Protein farnesyltransfe 99.7 7.9E-14 2.7E-18 127.6 27.1 245 161-421 100-364 (382)
52 2q7f_A YRRB protein; TPR, prot 99.7 2.5E-14 8.7E-19 123.4 22.2 200 194-399 24-223 (243)
53 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.8E-15 2.7E-19 129.2 19.2 245 172-433 19-269 (275)
54 1ouv_A Conserved hypothetical 99.6 1.3E-12 4.5E-17 114.9 31.6 234 226-483 3-260 (273)
55 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.6E-18 122.0 24.2 244 204-465 16-266 (275)
56 4e6h_A MRNA 3'-END-processing 99.6 1.1E-11 3.7E-16 121.1 38.8 429 40-481 52-577 (679)
57 3sf4_A G-protein-signaling mod 99.6 4.1E-14 1.4E-18 132.2 20.2 159 301-460 189-362 (406)
58 3sf4_A G-protein-signaling mod 99.6 2.9E-14 9.9E-19 133.2 18.3 305 122-428 8-365 (406)
59 4e6h_A MRNA 3'-END-processing 99.6 4.5E-11 1.5E-15 116.7 38.5 390 71-472 48-533 (679)
60 4a1s_A PINS, partner of inscut 99.6 6.1E-14 2.1E-18 131.4 17.6 282 126-441 51-374 (411)
61 2ond_A Cleavage stimulation fa 99.6 4E-12 1.4E-16 113.8 28.7 222 210-441 33-272 (308)
62 3e4b_A ALGK; tetratricopeptide 99.6 3.7E-13 1.3E-17 127.1 22.3 369 35-438 18-420 (452)
63 4a1s_A PINS, partner of inscut 99.6 3.4E-14 1.2E-18 133.1 15.0 281 54-363 47-372 (411)
64 3vtx_A MAMA; tetratricopeptide 99.6 1.5E-12 5.2E-17 106.9 22.4 169 263-441 4-172 (184)
65 3ulq_A Response regulator aspa 99.6 9.6E-13 3.3E-17 121.9 23.5 299 133-439 22-368 (383)
66 3ro2_A PINS homolog, G-protein 99.6 1.1E-13 3.7E-18 125.6 16.5 272 126-399 8-333 (338)
67 3vtx_A MAMA; tetratricopeptide 99.5 3.1E-12 1E-16 105.1 23.1 165 193-362 5-169 (184)
68 3ro2_A PINS homolog, G-protein 99.5 2.5E-13 8.4E-18 123.3 18.1 280 160-441 7-334 (338)
69 2ond_A Cleavage stimulation fa 99.5 8E-12 2.7E-16 111.8 27.3 218 176-399 34-271 (308)
70 3q15_A PSP28, response regulat 99.5 8.7E-12 3E-16 115.2 27.3 311 120-439 7-365 (378)
71 3ulq_A Response regulator aspa 99.5 8.4E-13 2.9E-17 122.3 19.8 227 65-291 22-291 (383)
72 4abn_A Tetratricopeptide repea 99.5 9.4E-13 3.2E-17 125.1 20.0 214 209-435 84-317 (474)
73 4abn_A Tetratricopeptide repea 99.5 1.6E-12 5.5E-17 123.5 21.1 208 244-465 83-312 (474)
74 3nf1_A KLC 1, kinesin light ch 99.5 1.4E-13 4.8E-18 123.5 12.2 241 193-441 27-309 (311)
75 3nf1_A KLC 1, kinesin light ch 99.5 1.6E-13 5.5E-18 123.1 11.9 171 122-292 26-223 (311)
76 4i17_A Hypothetical protein; T 99.5 1.9E-11 6.5E-16 104.2 22.5 210 226-454 4-223 (228)
77 1hz4_A MALT regulatory protein 99.4 1.2E-10 4E-15 107.4 27.2 271 129-399 20-323 (373)
78 1hz4_A MALT regulatory protein 99.4 1.2E-10 4E-15 107.4 27.0 277 162-440 18-323 (373)
79 3q15_A PSP28, response regulat 99.4 1.1E-11 3.9E-16 114.4 19.1 227 168-398 111-365 (378)
80 3as5_A MAMA; tetratricopeptide 99.4 4.7E-11 1.6E-15 97.8 20.3 162 92-257 10-172 (186)
81 3as5_A MAMA; tetratricopeptide 99.4 8E-11 2.7E-15 96.4 20.6 163 195-362 10-172 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.4 5E-11 1.7E-15 117.8 21.5 163 265-438 10-173 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.4 8.3E-11 2.8E-15 116.3 22.0 165 193-362 9-173 (723)
84 4i17_A Hypothetical protein; T 99.3 2.5E-10 8.5E-15 97.2 21.3 197 191-399 5-210 (228)
85 1qqe_A Vesicular transport pro 99.3 2E-10 6.9E-15 101.7 20.2 202 238-441 46-271 (292)
86 3mv2_B Coatomer subunit epsilo 99.3 1.8E-09 6E-14 93.7 25.3 248 201-480 21-288 (310)
87 3edt_B KLC 2, kinesin light ch 99.3 3.9E-11 1.3E-15 105.7 15.3 232 170-439 13-281 (283)
88 3edt_B KLC 2, kinesin light ch 99.3 6.5E-11 2.2E-15 104.3 15.5 136 157-292 42-197 (283)
89 4ga2_A E3 SUMO-protein ligase 99.2 9.7E-11 3.3E-15 92.2 11.6 144 306-460 4-149 (150)
90 3qky_A Outer membrane assembly 99.2 3.8E-09 1.3E-13 91.8 22.0 207 228-459 14-246 (261)
91 3mv2_B Coatomer subunit epsilo 99.2 5.8E-09 2E-13 90.5 22.6 64 123-186 100-164 (310)
92 3dra_A Protein farnesyltransfe 99.2 4.1E-08 1.4E-12 86.1 28.1 239 204-453 43-301 (306)
93 3qky_A Outer membrane assembly 99.2 2.7E-09 9.3E-14 92.8 19.9 168 193-363 15-224 (261)
94 1qqe_A Vesicular transport pro 99.2 1.3E-09 4.3E-14 96.6 17.8 209 173-399 32-270 (292)
95 2fo7_A Synthetic consensus TPR 99.2 4.2E-09 1.4E-13 80.9 17.7 131 302-441 4-134 (136)
96 2uy1_A Cleavage stimulation fa 99.1 2.7E-07 9.1E-12 87.6 33.3 343 69-438 28-412 (493)
97 3urz_A Uncharacterized protein 99.1 2.1E-09 7.3E-14 89.8 16.8 181 230-441 5-188 (208)
98 3urz_A Uncharacterized protein 99.1 3.3E-09 1.1E-13 88.6 17.9 180 193-399 4-187 (208)
99 2uy1_A Cleavage stimulation fa 99.1 6.4E-08 2.2E-12 91.8 28.1 359 68-469 7-410 (493)
100 2pzi_A Probable serine/threoni 99.1 2.6E-09 8.8E-14 106.2 19.3 173 204-384 402-583 (681)
101 2fo7_A Synthetic consensus TPR 99.1 7.9E-09 2.7E-13 79.3 18.1 90 199-291 7-96 (136)
102 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.2E-08 7.5E-13 84.8 21.9 187 192-399 3-214 (225)
103 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.1E-08 3.9E-13 86.6 19.8 187 228-441 3-215 (225)
104 2pzi_A Probable serine/threoni 99.1 6.8E-09 2.3E-13 103.2 20.8 173 240-425 402-583 (681)
105 2r5s_A Uncharacterized protein 99.1 3.9E-09 1.3E-13 85.6 14.8 160 197-361 10-171 (176)
106 2vsy_A XCC0866; transferase, g 99.1 5.9E-09 2E-13 101.8 18.0 153 243-399 3-158 (568)
107 4ga2_A E3 SUMO-protein ligase 99.1 1.5E-09 5.1E-14 85.3 11.2 108 206-317 10-117 (150)
108 3qou_A Protein YBBN; thioredox 99.0 1.5E-08 5E-13 89.4 18.6 161 266-437 119-282 (287)
109 3qou_A Protein YBBN; thioredox 99.0 1.2E-08 4.2E-13 89.8 18.1 166 191-361 115-282 (287)
110 2r5s_A Uncharacterized protein 99.0 8.5E-09 2.9E-13 83.5 15.4 161 93-256 9-171 (176)
111 3dra_A Protein farnesyltransfe 99.0 3.5E-07 1.2E-11 80.2 25.9 216 175-397 50-286 (306)
112 2ifu_A Gamma-SNAP; membrane fu 99.0 1.3E-08 4.3E-13 90.8 16.0 200 68-291 4-222 (307)
113 4gco_A Protein STI-1; structur 99.0 2.5E-08 8.5E-13 75.5 15.3 111 335-454 14-124 (126)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 1.7E-08 6E-13 89.9 16.8 231 171-432 4-254 (307)
115 3rjv_A Putative SEL1 repeat pr 99.0 7.4E-08 2.5E-12 80.6 19.0 177 175-364 3-198 (212)
116 2vsy_A XCC0866; transferase, g 99.0 2.4E-08 8.1E-13 97.5 18.2 156 171-331 2-160 (568)
117 3rjv_A Putative SEL1 repeat pr 99.0 9.5E-08 3.2E-12 79.9 19.2 163 264-441 18-199 (212)
118 1na0_A Designed protein CTPR3; 98.9 1.4E-07 4.7E-12 71.0 16.2 117 334-459 9-125 (125)
119 3u3w_A Transcriptional activat 98.9 2.6E-07 8.9E-12 81.7 19.9 162 130-291 82-264 (293)
120 3q7a_A Farnesyltransferase alp 98.9 2E-06 6.9E-11 76.2 25.1 237 210-454 71-346 (349)
121 3dss_A Geranylgeranyl transfer 98.9 5.6E-06 1.9E-10 73.1 27.7 212 209-456 90-320 (331)
122 2lni_A Stress-induced-phosphop 98.8 1.4E-07 4.8E-12 72.0 15.0 119 333-460 15-133 (133)
123 3u3w_A Transcriptional activat 98.8 4.4E-07 1.5E-11 80.2 20.1 62 336-397 198-265 (293)
124 2qfc_A PLCR protein; TPR, HTH, 98.8 7.6E-07 2.6E-11 78.7 21.2 172 266-438 77-265 (293)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.8E-07 1.3E-11 76.3 18.3 147 302-455 9-166 (213)
126 2vyi_A SGTA protein; chaperone 98.8 3.5E-07 1.2E-11 69.4 16.2 120 333-461 11-130 (131)
127 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.4E-07 1.1E-11 76.6 17.2 99 192-292 36-149 (213)
128 3gyz_A Chaperone protein IPGC; 98.8 7.5E-08 2.6E-12 75.2 12.0 101 333-441 35-135 (151)
129 2vgx_A Chaperone SYCD; alterna 98.8 6.6E-08 2.2E-12 75.6 11.7 111 322-441 10-120 (148)
130 3gyz_A Chaperone protein IPGC; 98.8 1.3E-07 4.5E-12 73.8 12.8 97 301-399 38-134 (151)
131 3q7a_A Farnesyltransferase alp 98.8 3.4E-06 1.2E-10 74.8 22.6 178 62-244 60-257 (349)
132 4gco_A Protein STI-1; structur 98.7 2.1E-07 7.3E-12 70.3 12.8 111 370-488 14-124 (126)
133 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.3E-11 76.6 20.3 166 125-290 77-263 (293)
134 2e2e_A Formate-dependent nitri 98.7 2.6E-07 8.9E-12 74.7 14.0 122 311-441 22-146 (177)
135 2c2l_A CHIP, carboxy terminus 98.7 6.8E-08 2.3E-12 84.7 11.0 193 54-257 3-198 (281)
136 3upv_A Heat shock protein STI1 98.7 5.4E-07 1.8E-11 68.1 14.7 114 334-456 4-123 (126)
137 1a17_A Serine/threonine protei 98.7 8.3E-07 2.8E-11 70.7 16.4 129 301-438 15-145 (166)
138 1a17_A Serine/threonine protei 98.7 9.3E-07 3.2E-11 70.4 16.6 126 195-324 15-142 (166)
139 4f3v_A ESX-1 secretion system 98.7 2E-07 7E-12 79.8 13.1 188 67-259 18-238 (282)
140 2e2e_A Formate-dependent nitri 98.7 1.6E-07 5.4E-12 76.1 11.6 121 276-399 22-145 (177)
141 1na0_A Designed protein CTPR3; 98.7 1.4E-06 4.8E-11 65.3 16.0 98 194-294 10-107 (125)
142 1elw_A TPR1-domain of HOP; HOP 98.7 1.3E-06 4.3E-11 64.9 15.3 112 334-454 4-115 (118)
143 2vyi_A SGTA protein; chaperone 98.7 1.2E-06 4.2E-11 66.3 15.5 116 194-313 13-128 (131)
144 2c2l_A CHIP, carboxy terminus 98.7 1.5E-07 5E-12 82.6 11.4 195 192-398 3-199 (281)
145 2xcb_A PCRH, regulatory protei 98.7 2.6E-07 8.8E-12 71.7 11.5 105 334-447 18-122 (142)
146 3gw4_A Uncharacterized protein 98.6 3.7E-07 1.3E-11 75.6 12.9 85 205-291 4-93 (203)
147 2lni_A Stress-induced-phosphop 98.6 1.2E-06 4E-11 66.8 14.5 97 194-293 17-113 (133)
148 3gw4_A Uncharacterized protein 98.6 4.1E-07 1.4E-11 75.3 12.3 132 194-325 27-173 (203)
149 2vgx_A Chaperone SYCD; alterna 98.6 5.9E-07 2E-11 70.1 12.2 96 195-293 23-118 (148)
150 4f3v_A ESX-1 secretion system 98.6 4.8E-07 1.6E-11 77.5 12.5 188 205-399 18-238 (282)
151 2fbn_A 70 kDa peptidylprolyl i 98.6 1.7E-07 5.8E-12 77.5 9.3 118 335-460 39-171 (198)
152 3dss_A Geranylgeranyl transfer 98.6 2.1E-05 7.3E-10 69.4 23.0 171 64-239 38-237 (331)
153 3sz7_A HSC70 cochaperone (SGT) 98.6 1.4E-06 4.6E-11 69.4 14.2 105 333-446 10-114 (164)
154 1p5q_A FKBP52, FK506-binding p 98.6 1E-06 3.5E-11 79.3 14.9 123 333-463 146-282 (336)
155 4gcn_A Protein STI-1; structur 98.6 1.5E-06 5.1E-11 65.7 13.3 110 335-451 9-122 (127)
156 1p5q_A FKBP52, FK506-binding p 98.6 2.1E-06 7.3E-11 77.3 16.5 137 193-353 147-283 (336)
157 2dba_A Smooth muscle cell asso 98.6 3.5E-06 1.2E-10 65.4 15.5 113 333-455 27-143 (148)
158 3q49_B STIP1 homology and U bo 98.5 3.1E-06 1.1E-10 64.9 14.7 101 333-441 8-108 (137)
159 2fbn_A 70 kDa peptidylprolyl i 98.5 1.9E-07 6.4E-12 77.2 7.7 172 97-291 11-184 (198)
160 4gcn_A Protein STI-1; structur 98.5 2.2E-06 7.6E-11 64.7 13.1 105 302-415 11-121 (127)
161 2kck_A TPR repeat; tetratricop 98.5 2.1E-06 7.3E-11 62.9 12.2 101 333-441 5-108 (112)
162 3upv_A Heat shock protein STI1 98.5 2.1E-06 7.2E-11 64.8 12.1 107 369-483 4-116 (126)
163 2xcb_A PCRH, regulatory protei 98.5 1.3E-06 4.6E-11 67.5 11.0 95 196-293 21-115 (142)
164 2kck_A TPR repeat; tetratricop 98.5 3.1E-06 1.1E-10 62.0 12.5 99 194-295 7-108 (112)
165 1elw_A TPR1-domain of HOP; HOP 98.5 9.6E-06 3.3E-10 59.9 15.2 97 194-293 5-101 (118)
166 1elr_A TPR2A-domain of HOP; HO 98.5 3E-06 1E-10 64.1 12.6 117 334-457 4-124 (131)
167 1hxi_A PEX5, peroxisome target 98.5 2.6E-06 9E-11 63.7 11.7 96 337-441 20-116 (121)
168 2xev_A YBGF; tetratricopeptide 98.4 1.3E-05 4.4E-10 60.6 15.6 101 339-449 7-114 (129)
169 3sz7_A HSC70 cochaperone (SGT) 98.4 8.7E-06 3E-10 64.7 15.1 101 192-295 10-110 (164)
170 1elr_A TPR2A-domain of HOP; HO 98.4 3.5E-06 1.2E-10 63.8 11.7 110 301-419 6-121 (131)
171 4b4t_Q 26S proteasome regulato 98.4 1.3E-05 4.6E-10 75.0 17.8 169 267-438 58-244 (434)
172 4b4t_Q 26S proteasome regulato 98.4 3.4E-05 1.2E-09 72.2 20.1 60 302-361 138-202 (434)
173 3q49_B STIP1 homology and U bo 98.4 1.5E-05 5.2E-10 60.9 14.5 99 192-293 8-106 (137)
174 1hxi_A PEX5, peroxisome target 98.4 4.7E-06 1.6E-10 62.3 11.0 96 302-399 20-115 (121)
175 3rkv_A Putative peptidylprolyl 98.3 1.1E-05 3.7E-10 63.9 13.2 112 336-455 13-142 (162)
176 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 8.1E-06 2.8E-10 76.9 14.0 122 334-463 268-403 (457)
177 2xev_A YBGF; tetratricopeptide 98.3 3.2E-05 1.1E-09 58.3 14.7 93 305-399 8-106 (129)
178 1dce_A Protein (RAB geranylger 98.3 8E-05 2.7E-09 71.8 20.1 171 280-461 45-242 (567)
179 2dba_A Smooth muscle cell asso 98.3 1.8E-05 6.2E-10 61.3 13.1 109 368-485 27-140 (148)
180 3k9i_A BH0479 protein; putativ 98.3 4.5E-06 1.5E-10 62.0 8.8 88 347-441 3-92 (117)
181 3rkv_A Putative peptidylprolyl 98.2 1.1E-05 3.8E-10 63.9 11.3 110 369-479 11-131 (162)
182 1wao_1 Serine/threonine protei 98.2 6.2E-06 2.1E-10 78.0 11.1 117 308-434 15-134 (477)
183 1wao_1 Serine/threonine protei 98.2 1.8E-05 6E-10 74.9 14.1 118 167-288 15-134 (477)
184 2hr2_A Hypothetical protein; a 98.2 1.2E-05 4.2E-10 62.0 10.2 101 337-446 14-137 (159)
185 3ro3_A PINS homolog, G-protein 98.2 1.7E-05 5.9E-10 62.4 11.7 60 232-291 12-76 (164)
186 3ro3_A PINS homolog, G-protein 98.2 1.6E-05 5.4E-10 62.6 11.3 135 264-398 9-158 (164)
187 1ihg_A Cyclophilin 40; ppiase 98.2 1.4E-05 4.7E-10 72.8 12.2 117 337-461 226-357 (370)
188 3k9i_A BH0479 protein; putativ 98.2 1.3E-05 4.5E-10 59.4 9.9 87 171-259 3-91 (117)
189 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.4E-05 1.8E-09 71.3 15.5 121 231-353 270-404 (457)
190 2hr2_A Hypothetical protein; a 98.1 1.5E-05 5.2E-10 61.5 8.3 104 371-476 13-133 (159)
191 1na3_A Designed protein CTPR2; 98.1 6.8E-05 2.3E-09 52.3 11.2 83 369-459 9-91 (91)
192 1ihg_A Cyclophilin 40; ppiase 98.0 5.4E-05 1.8E-09 68.9 12.9 138 265-431 224-362 (370)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 1.9E-05 6.4E-10 71.1 9.3 98 371-478 232-332 (338)
194 2l6j_A TPR repeat-containing p 98.0 4.6E-05 1.6E-09 55.6 9.6 88 368-463 3-96 (111)
195 2kat_A Uncharacterized protein 97.9 7.7E-05 2.6E-09 54.9 10.0 81 352-440 3-83 (115)
196 1dce_A Protein (RAB geranylger 97.9 0.001 3.5E-08 64.1 20.3 173 209-387 45-244 (567)
197 2if4_A ATFKBP42; FKBP-like, al 97.9 3.1E-05 1.1E-09 69.7 8.7 149 229-399 179-329 (338)
198 1zu2_A Mitochondrial import re 97.9 6.6E-05 2.3E-09 57.8 8.4 87 346-441 14-122 (158)
199 1zu2_A Mitochondrial import re 97.8 2.4E-05 8.1E-10 60.2 5.6 102 380-489 13-135 (158)
200 1klx_A Cysteine rich protein B 97.8 0.00085 2.9E-08 51.1 14.2 111 314-441 10-128 (138)
201 2kat_A Uncharacterized protein 97.8 0.00034 1.2E-08 51.3 11.5 80 175-257 2-81 (115)
202 2l6j_A TPR repeat-containing p 97.8 0.00015 5.2E-09 52.7 9.3 93 333-434 3-102 (111)
203 1klx_A Cysteine rich protein B 97.8 0.0006 2E-08 52.0 12.6 111 137-259 9-127 (138)
204 3n71_A Histone lysine methyltr 97.7 0.00037 1.3E-08 65.6 12.4 127 308-439 318-464 (490)
205 1na3_A Designed protein CTPR2; 97.7 0.00084 2.9E-08 46.5 11.3 78 194-274 10-87 (91)
206 3ma5_A Tetratricopeptide repea 97.6 0.00036 1.2E-08 49.7 8.9 86 368-460 6-92 (100)
207 3n71_A Histone lysine methyltr 97.6 0.00014 4.7E-09 68.4 7.9 99 194-292 352-463 (490)
208 3ma5_A Tetratricopeptide repea 97.5 0.00098 3.3E-08 47.4 9.6 64 192-257 6-69 (100)
209 3ly7_A Transcriptional activat 97.3 0.0065 2.2E-07 53.9 14.8 67 367-441 275-341 (372)
210 3ly7_A Transcriptional activat 97.3 0.0091 3.1E-07 53.0 15.4 74 331-414 274-347 (372)
211 2kc7_A BFR218_protein; tetratr 97.3 0.0029 1E-07 44.6 10.1 65 375-448 6-72 (99)
212 2kc7_A BFR218_protein; tetratr 97.2 0.0016 5.4E-08 46.0 7.6 59 199-259 6-65 (99)
213 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0064 2.2E-07 43.4 10.1 83 368-451 4-86 (104)
214 1pc2_A Mitochondria fission pr 97.0 0.014 4.6E-07 44.4 11.4 91 350-449 14-109 (152)
215 3bee_A Putative YFRE protein; 96.9 0.014 4.8E-07 40.5 10.4 67 368-441 5-74 (93)
216 3qwp_A SET and MYND domain-con 96.9 0.0039 1.3E-07 57.6 9.6 98 341-438 294-399 (429)
217 3qww_A SET and MYND domain-con 96.9 0.0039 1.3E-07 57.6 9.4 93 346-438 310-410 (433)
218 3lvg_A Clathrin heavy chain 1; 96.9 0.00012 4E-09 66.3 -0.6 215 54-284 53-324 (624)
219 3mkq_A Coatomer beta'-subunit; 96.8 0.025 8.7E-07 57.4 15.5 98 58-180 632-729 (814)
220 3bee_A Putative YFRE protein; 96.7 0.014 4.9E-07 40.5 9.1 66 333-399 5-73 (93)
221 3mkq_B Coatomer subunit alpha; 96.7 0.044 1.5E-06 42.8 12.3 103 97-218 12-114 (177)
222 3mkq_A Coatomer beta'-subunit; 96.5 0.066 2.3E-06 54.4 16.6 151 66-254 610-761 (814)
223 3mkq_B Coatomer subunit alpha; 96.5 0.22 7.6E-06 38.8 15.3 129 63-219 13-141 (177)
224 3qwp_A SET and MYND domain-con 96.4 0.019 6.4E-07 53.1 10.6 25 231-255 331-355 (429)
225 3qww_A SET and MYND domain-con 96.4 0.0077 2.6E-07 55.6 7.8 86 206-291 311-409 (433)
226 4h7y_A Dual specificity protei 96.3 0.1 3.5E-06 39.1 11.6 55 312-367 73-127 (161)
227 1wy6_A Hypothetical protein ST 96.2 0.22 7.4E-06 36.6 14.6 137 104-261 21-157 (172)
228 1nzn_A CGI-135 protein, fissio 96.2 0.091 3.1E-06 38.3 11.1 96 345-449 12-112 (126)
229 4h7y_A Dual specificity protei 96.2 0.1 3.4E-06 39.2 11.2 116 333-457 12-140 (161)
230 3u64_A Protein TP_0956; tetrat 96.2 0.047 1.6E-06 46.4 10.6 93 350-452 179-284 (301)
231 1pc2_A Mitochondria fission pr 96.2 0.046 1.6E-06 41.5 9.5 80 318-399 17-101 (152)
232 3u64_A Protein TP_0956; tetrat 96.1 0.092 3.1E-06 44.7 12.2 89 209-300 179-278 (301)
233 2v5f_A Prolyl 4-hydroxylase su 95.9 0.11 3.8E-06 36.8 10.5 67 333-399 4-76 (104)
234 1wy6_A Hypothetical protein ST 94.8 0.83 2.8E-05 33.6 17.0 64 335-399 92-155 (172)
235 4ady_A RPN2, 26S proteasome re 94.8 3.9 0.00013 41.3 24.6 314 130-460 381-721 (963)
236 4ady_A RPN2, 26S proteasome re 94.4 4.9 0.00017 40.7 30.3 265 204-480 385-663 (963)
237 4gns_B Protein CSD3, chitin bi 94.4 0.28 9.7E-06 48.3 11.0 49 417-466 344-392 (754)
238 3lvg_A Clathrin heavy chain 1; 93.9 0.00045 1.6E-08 62.6 -8.5 245 90-354 54-324 (624)
239 4fhn_B Nucleoporin NUP120; pro 93.9 3.9 0.00013 43.2 19.4 210 95-325 817-1047(1139)
240 4gns_B Protein CSD3, chitin bi 93.5 0.29 9.9E-06 48.2 9.3 126 127-256 252-398 (754)
241 1nzn_A CGI-135 protein, fissio 93.5 0.58 2E-05 34.1 8.6 66 333-399 34-104 (126)
242 2ff4_A Probable regulatory pro 93.4 0.37 1.3E-05 43.8 9.4 75 412-487 173-254 (388)
243 1v54_E Cytochrome C oxidase po 93.3 0.6 2.1E-05 32.1 7.7 64 385-455 26-89 (109)
244 4b4t_P 26S proteasome regulato 93.1 5.3 0.00018 36.9 19.8 94 162-256 141-245 (445)
245 3o48_A Mitochondria fission 1 93.1 1.9 6.6E-05 31.6 11.3 74 365-447 36-114 (134)
246 1v54_E Cytochrome C oxidase po 93.0 0.5 1.7E-05 32.5 7.0 60 176-237 28-87 (109)
247 2wpv_A GET4, UPF0363 protein Y 91.9 5.7 0.0002 34.4 19.1 135 209-358 13-158 (312)
248 2ff4_A Probable regulatory pro 91.3 5.1 0.00017 36.2 14.1 72 196-269 174-250 (388)
249 3ffl_A Anaphase-promoting comp 91.0 1.4 4.7E-05 33.9 8.3 45 409-455 121-165 (167)
250 1y8m_A FIS1; mitochondria, unk 90.9 3.9 0.00013 30.4 12.6 74 366-448 36-114 (144)
251 3o48_A Mitochondria fission 1 90.6 1.5 5E-05 32.2 7.8 86 38-123 22-111 (134)
252 2y69_E Cytochrome C oxidase su 90.0 1.4 4.7E-05 32.2 7.0 59 177-237 72-130 (152)
253 3ffl_A Anaphase-promoting comp 89.9 0.9 3.1E-05 34.9 6.5 62 55-116 20-89 (167)
254 2y69_E Cytochrome C oxidase su 89.9 4.5 0.00015 29.6 9.6 62 387-455 71-132 (152)
255 4b4t_P 26S proteasome regulato 89.8 12 0.00042 34.5 23.6 152 303-459 141-307 (445)
256 4fhn_B Nucleoporin NUP120; pro 89.8 10 0.00036 40.0 16.7 178 270-460 818-1035(1139)
257 3lpz_A GET4 (YOR164C homolog); 89.3 11 0.00036 33.0 23.4 18 379-396 197-214 (336)
258 4b4t_R RPN7, 26S proteasome re 87.9 11 0.00039 34.5 13.9 99 159-257 132-236 (429)
259 1qsa_A Protein (soluble lytic 87.9 20 0.00069 34.6 25.8 116 278-397 228-347 (618)
260 1wdy_A 2-5A-dependent ribonucl 86.5 9 0.00031 32.4 11.9 22 276-297 191-212 (285)
261 1zbp_A Hypothetical protein VP 85.3 4 0.00014 34.2 8.2 55 202-258 6-60 (273)
262 4b4t_R RPN7, 26S proteasome re 85.2 14 0.00048 33.9 12.9 58 233-290 135-194 (429)
263 3esl_A Checkpoint serine/threo 80.3 14 0.00046 29.5 9.1 86 107-192 61-149 (202)
264 3esl_A Checkpoint serine/threo 80.0 21 0.00072 28.4 10.1 55 243-297 93-148 (202)
265 1wdy_A 2-5A-dependent ribonucl 79.5 11 0.00037 31.8 9.5 204 62-284 9-236 (285)
266 1zbp_A Hypothetical protein VP 76.3 34 0.0011 28.8 14.8 121 307-441 5-131 (273)
267 3kea_A K1L; tropism, ANK repea 75.5 22 0.00074 30.3 10.2 20 235-254 164-183 (285)
268 2uwj_G Type III export protein 75.4 17 0.00058 25.0 10.5 88 67-161 18-105 (115)
269 1y8m_A FIS1; mitochondria, unk 75.0 23 0.0008 26.3 12.9 69 331-399 36-107 (144)
270 2p58_C Putative type III secre 74.9 18 0.00061 24.9 11.0 88 67-161 19-106 (116)
271 4g8k_A 2-5A-dependent ribonucl 74.4 43 0.0015 29.1 12.7 19 97-115 63-81 (337)
272 1n11_A Ankyrin; clathrin, BAND 74.2 29 0.00098 31.7 11.3 81 62-147 18-101 (437)
273 3dfg_A Xcrecx, regulatory prot 73.9 27 0.00093 26.7 9.2 66 20-87 32-97 (162)
274 3eiq_C Programmed cell death p 73.7 37 0.0013 30.0 11.0 63 267-330 220-284 (358)
275 1s6c_A KV4 potassium channel-i 73.3 30 0.001 26.7 11.3 47 35-81 16-65 (183)
276 3e3v_A Regulatory protein RECX 72.2 20 0.00068 28.0 8.1 68 20-88 33-100 (177)
277 4a1g_A Mitotic checkpoint seri 71.9 27 0.00093 26.3 8.4 82 107-191 52-134 (152)
278 1s1e_A KV channel interacting 71.9 38 0.0013 27.4 11.9 12 194-205 190-201 (224)
279 3eu9_A Huntingtin-interacting 71.5 15 0.00051 29.9 8.0 19 97-115 46-64 (240)
280 1k1a_A B-cell lymphoma 3-encod 70.2 42 0.0014 27.2 10.9 53 63-115 14-68 (241)
281 1qsa_A Protein (soluble lytic 67.3 93 0.0032 30.1 39.1 77 95-175 77-153 (618)
282 2wvi_A Mitotic checkpoint seri 66.8 41 0.0014 25.8 8.9 83 107-192 47-130 (164)
283 1k1a_A B-cell lymphoma 3-encod 66.5 44 0.0015 27.1 9.9 24 131-154 14-37 (241)
284 3txn_A 26S proteasome regulato 66.3 75 0.0026 28.6 22.5 167 124-291 20-208 (394)
285 4a1g_A Mitotic checkpoint seri 65.4 41 0.0014 25.3 9.1 51 388-443 84-134 (152)
286 3eu9_A Huntingtin-interacting 64.8 23 0.00077 28.8 7.7 18 99-116 15-32 (240)
287 3kea_A K1L; tropism, ANK repea 61.7 54 0.0019 27.7 9.7 114 235-362 132-246 (285)
288 2jul_A Calsenilin; EF-hand, ca 61.7 68 0.0023 26.6 11.3 109 107-219 129-255 (256)
289 3hra_A Ankyrin repeat family p 60.8 25 0.00084 27.7 7.0 15 101-115 13-27 (201)
290 2zu6_B Programmed cell death p 60.8 71 0.0024 27.5 10.0 64 232-296 169-234 (307)
291 2d2s_A Exocyst complex compone 58.8 75 0.0026 26.1 9.6 90 60-150 23-118 (235)
292 3lpz_A GET4 (YOR164C homolog); 58.4 94 0.0032 27.1 22.4 166 93-291 38-214 (336)
293 3ltm_A Alpha-REP4; protein eng 57.6 69 0.0024 25.3 19.1 48 89-138 63-110 (211)
294 3txn_A 26S proteasome regulato 55.6 1.2E+02 0.004 27.3 23.3 58 269-326 104-166 (394)
295 4gq2_M Nucleoporin NUP120; bet 55.6 1.4E+02 0.0049 30.7 12.9 115 339-459 815-950 (950)
296 2fe3_A Peroxide operon regulat 55.5 60 0.002 24.1 7.8 64 42-106 9-72 (145)
297 2uwj_G Type III export protein 54.7 49 0.0017 22.8 7.3 12 275-286 50-61 (115)
298 2p58_C Putative type III secre 53.9 51 0.0018 22.7 7.9 13 275-287 51-63 (116)
299 3d5l_A Regulatory protein RECX 51.8 57 0.002 26.5 7.6 67 20-87 76-142 (221)
300 3jxi_A Vanilloid receptor-rela 51.3 19 0.00064 30.0 4.9 55 130-184 9-72 (260)
301 3hra_A Ankyrin repeat family p 50.8 39 0.0013 26.4 6.6 14 284-297 158-171 (201)
302 4aez_C MAD3, mitotic spindle c 50.5 37 0.0013 27.5 6.1 54 386-444 131-184 (223)
303 3jxi_A Vanilloid receptor-rela 50.0 47 0.0016 27.4 7.3 22 65-86 12-33 (260)
304 4ets_A Ferric uptake regulatio 49.9 59 0.002 24.8 7.0 65 42-107 20-86 (162)
305 4b4t_S RPN3, 26S proteasome re 49.7 1.7E+02 0.0058 27.4 11.9 65 158-222 231-299 (523)
306 2nsz_A Programmed cell death p 49.3 73 0.0025 23.1 7.7 22 269-290 12-33 (129)
307 3eyy_A Putative iron uptake re 47.7 59 0.002 24.2 6.6 61 45-107 9-69 (145)
308 3b7b_A Euchromatic histone-lys 47.6 56 0.0019 26.4 7.3 21 307-327 215-235 (237)
309 2fu4_A Ferric uptake regulatio 47.5 55 0.0019 21.2 7.5 61 45-106 7-68 (83)
310 1n11_A Ankyrin; clathrin, BAND 47.2 1.6E+02 0.0055 26.5 13.4 175 62-252 51-232 (437)
311 2wpv_A GET4, UPF0363 protein Y 47.0 1.4E+02 0.0048 25.8 22.9 165 94-291 37-215 (312)
312 3ljn_A Hypothetical protein; a 46.6 55 0.0019 28.8 7.5 18 98-115 25-42 (364)
313 4gq2_M Nucleoporin NUP120; bet 45.8 1.9E+02 0.0066 29.7 12.0 131 96-243 816-950 (950)
314 4ets_A Ferric uptake regulatio 45.6 88 0.003 23.8 7.4 61 255-316 24-86 (162)
315 2w57_A Ferric uptake regulatio 45.1 86 0.003 23.4 7.2 63 44-107 6-69 (150)
316 1oai_A Nuclear RNA export fact 45.0 29 0.00099 21.1 3.6 23 207-229 34-56 (59)
317 1y1x_A Leishmania major homolo 44.4 1.1E+02 0.0037 23.7 10.3 45 138-187 127-171 (191)
318 2wvi_A Mitotic checkpoint seri 43.9 1.1E+02 0.0036 23.5 9.6 21 235-255 102-122 (164)
319 2ion_A PDCD4, programmed cell 43.8 84 0.0029 23.7 6.9 22 96-117 15-36 (152)
320 3ltm_A Alpha-REP4; protein eng 43.6 1.2E+02 0.004 23.9 20.8 154 88-257 31-184 (211)
321 3bu8_A Telomeric repeat-bindin 43.5 1.3E+02 0.0043 24.2 11.3 50 350-399 88-144 (235)
322 3eiq_C Programmed cell death p 43.3 1.7E+02 0.006 25.8 14.0 25 58-82 57-81 (358)
323 4aez_C MAD3, mitotic spindle c 43.2 63 0.0022 26.2 6.3 23 199-221 156-178 (223)
324 1ya0_A SMG-7 transcript varian 43.1 1.1E+02 0.0039 28.5 9.0 71 414-485 156-227 (497)
325 2d2s_A Exocyst complex compone 42.9 1.4E+02 0.0047 24.5 9.7 90 305-397 24-119 (235)
326 3e3v_A Regulatory protein RECX 42.3 1.2E+02 0.004 23.5 9.3 46 353-399 52-97 (177)
327 3bu8_A Telomeric repeat-bindin 41.5 1E+02 0.0035 24.7 7.0 22 130-151 121-142 (235)
328 3bqo_A Telomeric repeat-bindin 41.2 1.3E+02 0.0045 23.8 10.4 47 106-152 94-146 (211)
329 3aji_A 26S proteasome non-ATPa 40.1 1E+02 0.0036 24.5 7.8 18 98-115 11-28 (231)
330 3b7b_A Euchromatic histone-lys 39.8 94 0.0032 25.0 7.5 53 306-362 181-235 (237)
331 2rfa_A Transient receptor pote 39.0 1.5E+02 0.005 23.7 10.6 18 98-115 8-25 (232)
332 2ijq_A Hypothetical protein; s 38.6 1.3E+02 0.0044 22.9 7.5 58 58-116 36-101 (161)
333 2nsz_A Programmed cell death p 38.3 1.1E+02 0.0038 22.1 8.2 22 96-117 13-34 (129)
334 2xig_A Ferric uptake regulatio 38.3 1.2E+02 0.0042 22.6 8.4 58 325-383 18-75 (150)
335 2ion_A PDCD4, programmed cell 37.1 1.2E+02 0.004 22.9 6.7 75 411-486 10-88 (152)
336 4fjo_A DNA repair protein REV1 36.9 85 0.0029 21.4 5.4 47 35-81 10-59 (97)
337 2rfa_A Transient receptor pote 36.7 1.4E+02 0.0048 23.8 8.1 22 96-117 40-61 (232)
338 3mwm_A ZUR, putative metal upt 36.5 65 0.0022 23.7 5.3 46 61-106 19-64 (139)
339 3eyy_A Putative iron uptake re 36.1 1.1E+02 0.0039 22.6 6.6 57 325-383 10-66 (145)
340 1mzb_A Ferric uptake regulatio 35.8 1.3E+02 0.0043 22.0 7.0 42 340-381 23-65 (136)
341 3c1d_A Protein ORAA, regulator 35.4 1.4E+02 0.0049 22.5 10.4 67 20-88 20-96 (159)
342 1bpo_A Protein (clathrin); cla 34.4 2.8E+02 0.0096 25.6 10.5 35 84-118 355-389 (494)
343 2w57_A Ferric uptake regulatio 34.2 1.4E+02 0.0047 22.3 6.8 35 349-383 32-66 (150)
344 2xig_A Ferric uptake regulatio 33.5 1.5E+02 0.0051 22.1 8.3 60 255-315 18-77 (150)
345 3e3r_A Calcyphosin, calcyphosi 33.5 1.2E+02 0.004 23.7 6.9 30 52-81 53-82 (204)
346 2o03_A Probable zinc uptake re 33.2 74 0.0025 23.1 5.0 42 64-105 19-60 (131)
347 1ug3_A EIF4GI, eukaryotic prot 32.9 1.1E+02 0.0036 26.9 6.9 56 411-468 273-331 (339)
348 2o03_A Probable zinc uptake re 32.1 95 0.0033 22.5 5.5 37 277-313 23-59 (131)
349 3f3f_C Nucleoporin NUP85; stru 31.5 3.4E+02 0.012 25.7 21.8 41 106-147 221-266 (570)
350 3vu7_H DNA repair protein REV1 31.0 96 0.0033 22.4 5.1 47 35-81 37-86 (124)
351 1wgl_A TOLL-interacting protei 30.8 41 0.0014 20.5 2.6 16 312-327 36-51 (59)
352 3aji_A 26S proteasome non-ATPa 30.7 2E+02 0.0069 22.8 9.1 78 62-141 10-88 (231)
353 3ltj_A Alpharep-4; protein eng 30.5 1.9E+02 0.0065 22.4 21.1 17 192-208 120-136 (201)
354 1u9p_A PARC; unknown function; 30.3 1.4E+02 0.0049 21.2 5.7 34 73-106 73-107 (120)
355 3mwm_A ZUR, putative metal upt 30.1 77 0.0027 23.3 4.7 47 414-460 17-63 (139)
356 2r9g_A AAA ATPase, central reg 29.8 2.1E+02 0.0072 22.7 9.3 18 171-188 27-44 (204)
357 3d5l_A Regulatory protein RECX 29.6 2.2E+02 0.0076 23.0 10.6 111 351-470 93-204 (221)
358 2fe3_A Peroxide operon regulat 29.6 1.7E+02 0.0058 21.6 8.4 58 149-207 13-70 (145)
359 2jul_A Calsenilin; EF-hand, ca 29.3 2.4E+02 0.0081 23.2 9.2 159 24-184 78-255 (256)
360 2ijq_A Hypothetical protein; s 28.9 1.9E+02 0.0066 22.0 7.5 51 242-292 45-103 (161)
361 3t8k_A Uncharacterized protein 28.6 2E+02 0.0069 22.1 7.9 59 99-158 12-70 (186)
362 3utm_A Tankyrase-1; tankyrase, 28.4 2.8E+02 0.0095 23.7 10.7 250 59-323 25-301 (351)
363 2fu4_A Ferric uptake regulatio 28.1 1.2E+02 0.0042 19.5 6.6 31 281-311 34-64 (83)
364 2d8n_A Recoverin; structural g 27.4 2.2E+02 0.0075 22.2 10.7 60 22-81 18-80 (207)
365 2b7e_A PRE-mRNA processing pro 27.3 1E+02 0.0034 18.8 3.9 29 281-309 3-31 (59)
366 4g8k_A 2-5A-dependent ribonucl 27.1 3E+02 0.01 23.6 12.3 146 236-400 172-325 (337)
367 2r9g_A AAA ATPase, central reg 27.1 2.4E+02 0.0081 22.4 10.5 37 241-278 26-62 (204)
368 1mzb_A Ferric uptake regulatio 26.6 1.9E+02 0.0064 21.1 7.6 44 164-207 23-67 (136)
369 3ljn_A Hypothetical protein; a 26.4 3.2E+02 0.011 23.7 9.9 94 121-223 16-111 (364)
370 3t8k_A Uncharacterized protein 26.3 2.2E+02 0.0076 21.9 9.5 29 235-263 41-69 (186)
371 3bge_A Predicted ATPase; struc 26.3 2.4E+02 0.0083 22.3 7.9 34 241-274 19-52 (201)
372 2yru_A Steroid receptor RNA ac 25.5 1.6E+02 0.0054 21.0 5.3 41 181-221 49-89 (118)
373 1a1w_A FADD protein; apoptosis 25.1 1.5E+02 0.0051 19.9 4.9 43 72-115 40-82 (91)
374 3bge_A Predicted ATPase; struc 24.8 2.6E+02 0.0089 22.1 7.8 13 139-151 23-35 (201)
375 1y1x_A Leishmania major homolo 24.5 2.4E+02 0.0082 21.7 8.8 26 194-222 146-171 (191)
376 1ug3_A EIF4GI, eukaryotic prot 24.4 3.5E+02 0.012 23.5 10.2 22 96-117 17-38 (339)
377 2f6m_A Suppressor protein STP2 24.2 1.4E+02 0.0046 18.6 5.3 46 412-458 4-49 (65)
378 2etb_A Transient receptor pote 24.1 2.8E+02 0.0096 22.4 7.9 56 130-186 6-71 (256)
379 1ihb_A P18-INK4C(INK6), cyclin 23.8 1.6E+02 0.0056 21.6 5.9 18 97-114 9-26 (162)
380 1bd8_A P19INK4D CDK4/6 inhibit 23.7 92 0.0032 22.9 4.4 17 99-115 8-24 (156)
381 2znd_A Programmed cell death p 23.6 1.8E+02 0.0061 21.8 6.1 22 24-45 11-32 (172)
382 2ko4_A Mediator of RNA polymer 22.8 1E+02 0.0035 20.0 3.4 38 111-148 24-61 (81)
383 1fpw_A Yeast frequenin, calciu 22.1 2.6E+02 0.0089 21.2 11.0 31 35-65 23-55 (190)
384 3ctd_A Putative ATPase, AAA fa 21.8 3.1E+02 0.011 21.9 8.5 16 173-188 50-65 (213)
385 3c1d_A Protein ORAA, regulator 21.7 2.6E+02 0.0089 21.0 11.3 47 351-399 47-93 (159)
386 4e2i_2 DNA polymerase alpha su 21.1 89 0.0031 20.3 3.0 28 462-489 5-32 (78)
387 3ctd_A Putative ATPase, AAA fa 21.1 3.2E+02 0.011 21.8 9.8 44 235-278 38-84 (213)
388 2znd_A Programmed cell death p 20.9 2.6E+02 0.009 20.8 8.3 43 138-185 108-150 (172)
389 3ltj_A Alpharep-4; protein eng 20.5 3E+02 0.01 21.2 21.5 107 333-457 89-195 (201)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-38 Score=309.14 Aligned_cols=301 Identities=9% Similarity=-0.011 Sum_probs=253.0
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.++|+++.+. +++..+++.++.++.+.|++++|..+|+++.+. .+.+..++..++.++.+.|++++|.+
T Consensus 285 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp HHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred cchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 34444444444444332 367888889999999999999999999999886 46678888999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 251 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.++
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 999998654 357889999999999999999999999999886543 577899999999999999999999999998766
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-
Q 011226 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS- 409 (490)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~- 409 (490)
. +..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|+++|+++.+... +.+..|+
T Consensus 439 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~p~~ 514 (597)
T 2xpi_A 439 G-THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK--KTQSNEKP 514 (597)
T ss_dssp T-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HSCCCSGG
T ss_pred c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh--ccccchhh
Confidence 4 788999999999999999999999999998643 3788999999999999999999999999988710 0003376
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHH
Q 011226 410 -SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKK 482 (490)
Q Consensus 410 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~ 482 (490)
..+|..++.+|.+.|++++|.+.++++.+.+| .+..+|..++.+|.+.|++.+++...-+...+.|+.....
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 78999999999999999999999999999998 8999999999999999997776654444555677765443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-36 Score=295.72 Aligned_cols=404 Identities=11% Similarity=-0.002 Sum_probs=355.6
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHh
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFV 114 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 114 (490)
+...+..+++.+.. ..|+..++..++..|.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|.++|+
T Consensus 99 ~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 34455555555553 3456688888999999999999999999988544 5788899999999999999999999999
Q ss_pred hcCC-C----------------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------------------
Q 011226 115 DLPE-T----------------SKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNL----------------------- 154 (490)
Q Consensus 115 ~~~~-~----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 154 (490)
++.. . +.+..+|+.++.+|.+.|++++|+++|+++.+.++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 6443 2 23578999999999999999999999999876442
Q ss_pred -----------------------------------------------CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 155 -----------------------------------------------GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 155 -----------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
+++..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 156778889999999999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+. .+..++..++.++.+.|++++|..+++++.+. .+.+..+++.++..|.+.|++++|.++|+++.+... .+..+|
T Consensus 335 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 410 (597)
T 2xpi_A 335 DP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAW 410 (597)
T ss_dssp CT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHH
Confidence 53 37788999999999999999999999999976 677899999999999999999999999999987543 468899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 268 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
+.++.+|.+.|++++|.++|+++.+.++ .+..++..++.+|.+.|++++|.++|+.+.+..+. +..+|+.++..|.+.
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHh
Confidence 9999999999999999999999988755 37789999999999999999999999999987665 889999999999999
Q ss_pred CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH
Q 011226 348 GRLENAEELKERARRR----GADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE 421 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 421 (490)
|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|++.++++.+.+ ..+..+|..++.+|.
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-------TNDANVHTAIALVYL 561 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHH
Confidence 9999999999999875 66787 7899999999999999999999999999987 147899999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 422 QEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 422 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
+.|++++|.+.++++.+..| .+..++..+.++|.
T Consensus 562 ~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLAISP-NEIMASDLLKRALE 595 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHh
Confidence 99999999999999999998 88999998887764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-30 Score=243.86 Aligned_cols=382 Identities=12% Similarity=0.033 Sum_probs=337.0
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCH
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMT 139 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~ 139 (490)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++.... .+.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3556778999999999999997775 34556677778888899999999999998888 556788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
++|.+.|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998652 345679999999999999999999999998864 44 45677788889999999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC
Q 011226 219 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA 298 (490)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (490)
+.+. .+.+..+|..+...+.+.|++++|...|+++...++ .+...+..+...+...|++++|...+++.....+. +
T Consensus 161 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 161 AIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 9997 677789999999999999999999999999998654 45778899999999999999999999999887653 5
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011226 299 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 378 (490)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (490)
..++..+...+...|++++|...|+.+.+..+. +..++..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 678889999999999999999999999987665 67889999999999999999999999999863 4478899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 011226 379 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
+...|++++|++.++++.+.. +.+..++..+...+.+.|++++|...++++.+..| .+..+|..+...+...
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHc
Confidence 999999999999999999875 14588999999999999999999999999999988 8899999999998877
Q ss_pred CC
Q 011226 459 GR 460 (490)
Q Consensus 459 g~ 460 (490)
|+
T Consensus 387 ~~ 388 (388)
T 1w3b_A 387 QD 388 (388)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-28 Score=229.25 Aligned_cols=369 Identities=13% Similarity=0.094 Sum_probs=322.9
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
+...+.+.|++++|.+.++.+.. .+.+...+..+...+...|++++|...++....... .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 35567789999999999998877 444566778888889999999999999999888653 5778999999999999999
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
++|...|+++.+.. +.+..+|..+..++...|++++|...|+++.+. .|.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999998853 224567899999999999999999999999997 566777888899999999999999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 011226 255 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI 334 (490)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 334 (490)
+....+ .+..+|..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|...+++.....+. +.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 988643 45788999999999999999999999999987654 5667888999999999999999999999887665 68
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
.++..+...+...|++++|...|+++.+.+.. +..+|..+...+.+.|++++|++.++++.+.. ..+..++.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~ 309 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-------PTHADSLN 309 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHH
Confidence 89999999999999999999999999986432 56789999999999999999999999999986 25688999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
.+...+.+.|++++|...++++.+..| .+..++..++.+|.+.|+..+++...-+...+.|+...
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 999999999999999999999999888 88999999999999999988777655555567776543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=6.3e-31 Score=249.11 Aligned_cols=204 Identities=10% Similarity=0.064 Sum_probs=121.0
Q ss_pred HHHHHHHHHHCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC---------HH
Q 011226 177 IPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL---------FE 246 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 246 (490)
+..+.+.+.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.| +.||..+|++||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34444555555544333 245566666666666666666666666666 66666666666666665443 45
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011226 247 KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE 326 (490)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (490)
+|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 327 SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 327 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666665543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=5.9e-31 Score=249.34 Aligned_cols=207 Identities=15% Similarity=0.172 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC---------h
Q 011226 140 EKAEALLEKMKELNLGFSS-MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND---------I 209 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~ 209 (490)
..+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456667778777765544 46889999999999999999999999999999999999999999998765 6
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS 289 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (490)
+.|.++|++|...| +.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 290 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.+..|+..+|+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998864
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.3e-26 Score=218.96 Aligned_cols=413 Identities=10% Similarity=-0.008 Sum_probs=328.1
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHH
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCY 133 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~ 133 (490)
...+......+.+.|++++|+..|+.+.+.+ |+...+..+..++.+.|++++|...++.+.+ .+.+..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 4566777888999999999999999998876 6899999999999999999999999999888 545677999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCC-----------------------------------cHH
Q 011226 134 CKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE-----------------------------------KIP 178 (490)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------------------------~a~ 178 (490)
...|++++|...|+++...+. ++......++..+....... ...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998764 44444444444333321111 111
Q ss_pred HHHHHHHHCCCC--------C-CHhhHHHHHHHHHH---cCChhHHHHHHHHHHH-----CCCC-------CCCHHHHHH
Q 011226 179 AIIQEMKASSIM--------P-DSYTYNVWMRALAA---VNDISGAERVIEEMKR-----DGRV-------AADWTTFSN 234 (490)
Q Consensus 179 ~~~~~~~~~~~~--------p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~ 234 (490)
.+...+...... | +...+......+.. .|++++|...|+++.+ .... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111111100 1 13344444444444 8999999999999988 3111 234567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
+...+...|++++|...|+++.+.... ...+..+..++...|++++|...++.+....+. +...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCC
Confidence 999999999999999999999886543 888899999999999999999999999886543 56678889999999999
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 394 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (490)
+++|...++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999887665 677889999999999999999999999998633 3567888899999999999999999999
Q ss_pred HHhcCCCCCCCCcCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHH
Q 011226 395 AIDTGRGDGGKWVPS----SETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLR 467 (490)
Q Consensus 395 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 467 (490)
+.+.... .++ ...+..+...+.. .|++++|...++++.+..+ .+..++..+..+|.+.|+..+++..
T Consensus 398 a~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 398 AIELENK-----LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHT-----SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhhhc-----cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9887511 011 3488999999999 9999999999999999988 8899999999999999997777655
Q ss_pred HHhhCCCCCCHHHH
Q 011226 468 RLKMEKVEVSEASK 481 (490)
Q Consensus 468 ~m~~~~~~p~~~~~ 481 (490)
.-+...+.|+....
T Consensus 472 ~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 472 FEESADLARTMEEK 485 (514)
T ss_dssp HHHHHHHCSSHHHH
T ss_pred HHHHHHhccccHHH
Confidence 55555667776543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=1.4e-24 Score=206.63 Aligned_cols=317 Identities=10% Similarity=0.038 Sum_probs=224.6
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
.+...+..+...+.+.|++++|+.+|+++.+... .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 3445566666666666666666666666665432 345566666666666666666666666666543 22455666666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHccCCCCHH
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADW---TTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLS 265 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 265 (490)
.++...|++++|...|+++.+. .+.+. ..+..+ ...+...|++++|...|+++.+... .+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChH
Confidence 6666667777777777666664 23333 344333 3346777777777777777766433 4566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH-----
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM----- 340 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 340 (490)
.+..+..+|...|++++|...|+++....+. +..++..+...+...|++++|...|+.+....+. +...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 6777777777777777777777777665432 4566777777777777777777777777665443 44444443
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC
Q 011226 341 -------IGAYAKEGRLENAEELKERARRRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP 408 (490)
Q Consensus 341 -------i~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p 408 (490)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++++.+.. ..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------p~ 327 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-------PD 327 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cc
Confidence 78889999999999999999885 344 3467788889999999999999999999876 13
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 409 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
+...|..+..+|...|++++|...++++.+..| .+..++..+..+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 372 (450)
T 2y4t_A 328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKA 372 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence 588999999999999999999999999999988 788888888844
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=6.5e-24 Score=202.07 Aligned_cols=370 Identities=11% Similarity=-0.012 Sum_probs=248.6
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLL 130 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li 130 (490)
+.+...+..+...+.+.|++++|+.+|+.+.+.. +.+...+..+..++...|++++|...|+.+.. .+.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3455666666667777777777777777766553 34556666666666777777777777766666 333455666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 131 NCYCKELMTEKAEALLEKMKELNLGFSS---MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
..|.+.|++++|.+.|+++.+.+. .+. ..+..++..+.. ..+..+...+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 677777777777777776666442 122 344444333110 11223344567778
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++++|...|+++.+. .+.+..++..++.+|.+.|++++|.+.|+++.+... .+..++..+..+|...|++++|...|
T Consensus 158 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 234 (450)
T 2y4t_A 158 DYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEV 234 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887775 566777777788888888888888888887776543 45677777777888888888888888
Q ss_pred HHHHHhCCCCCchhHHHH------------HHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCChh
Q 011226 288 RSLRLAFPNTANISYLNM------------IQVLVNLKDLPGAEKCFKEWESGCATYD----IRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~ 351 (490)
+++....+. +...+..+ ...+...|++++|...|+.+.+..+. + ...+..+...+.+.|+++
T Consensus 235 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 235 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHH
Confidence 877765432 22333333 67788888888898888888775443 3 346777888888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHH-----------
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRH----------- 419 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~----------- 419 (490)
+|...++++.+.. +.+...|..+..+|...|++++|...++++++.. |+ ...+..+..+
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--------ENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------SSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHhhcccchh
Confidence 9999999888753 2367788888888899999999999999988876 44 5556555532
Q ss_pred -HHhcC-----ChHHHHHHHHH-HHHcCCC--CC-------HHhHHHHHHHHHhcCC
Q 011226 420 -FEQEK-----DVDGAEGFLEI-LKKAVDD--LG-------VEVFEPLIRTYAAAGR 460 (490)
Q Consensus 420 -~~~~g-----~~~~a~~~~~~-~~~~~~~--~~-------~~~~~~l~~~~~~~g~ 460 (490)
|...| +.+++.+.+++ .++..|. ++ ...+..+..+|...|+
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d 440 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD 440 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSG
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence 33344 56677888876 4544431 22 2367777888877777
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=2.4e-23 Score=202.86 Aligned_cols=411 Identities=10% Similarity=0.026 Sum_probs=310.3
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
....+......+.+.|++++|++.|+.+.... +.+...+..+..++.+.|++++|.+.|+.+.. .+.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45667778888999999999999999998876 45778888999999999999999999999888 55567889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC------CCCCCHhh-----------
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------SIMPDSYT----------- 195 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~~----------- 195 (490)
+...|++++|.+.|+. .... |+. ....+..+...+....|...++.+... ...|+...
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHH-HhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999963 3322 221 122233333444445677777766442 11122111
Q ss_pred -------------------HHHHHHHH--------HHcCChhHHHHHHHHHHHCCCCCCCHH-------HHHHHHHHHHH
Q 011226 196 -------------------YNVWMRAL--------AAVNDISGAERVIEEMKRDGRVAADWT-------TFSNLASIYVE 241 (490)
Q Consensus 196 -------------------~~~l~~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~ 241 (490)
...+...+ ...|++++|..+++++.+. .+.+.. ++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 11111111 1225789999999999986 444433 46677788889
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHH
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
.|++++|...|+++.... |+...+..+...+...|++++|...++.+....+. +..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999998864 55788899999999999999999999999887654 567888999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 401 (490)
++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..++++.+....
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9999887665 678899999999999999999999999998643 35678888999999999999999999999887511
Q ss_pred CCCCCcCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhh
Q 011226 402 DGGKWVPSSETIRTFMRHFEQE----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKM 471 (490)
Q Consensus 402 ~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~ 471 (490)
. .........+......+... |++++|...++++.+..| .+..++..+..+|...|+..+++...-+.
T Consensus 411 ~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 411 Q-EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp C-SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c-hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 0 00112233355566777787 999999999999999998 88999999999999999976666444444
Q ss_pred CCCCCCHH
Q 011226 472 EKVEVSEA 479 (490)
Q Consensus 472 ~~~~p~~~ 479 (490)
..+.|+..
T Consensus 489 l~~~~~~~ 496 (537)
T 3fp2_A 489 AILARTMD 496 (537)
T ss_dssp HHHC--CH
T ss_pred HHhCCCcH
Confidence 44455543
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-23 Score=202.29 Aligned_cols=400 Identities=11% Similarity=-0.047 Sum_probs=314.8
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHh
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFV 114 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 114 (490)
+...+...++...... |+...+..+...+.+.|++++|++.++.+.+.+ +.+...+..+..++...|++++|...|+
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555666666666655 578899999999999999999999999998876 4567789999999999999999999999
Q ss_pred hcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----------------------------------CC----
Q 011226 115 DLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKEL-----------------------------------NL---- 154 (490)
Q Consensus 115 ~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----------------------------------~~---- 154 (490)
.+.. .+++......++..+........+.+.+..+... ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 9877 3344555555555544433333333333211110 00
Q ss_pred -----CCCcchHHHHHHHHHh---cCCCCcHHHHHHHHHH-----CCCC--------CCHhhHHHHHHHHHHcCChhHHH
Q 011226 155 -----GFSSMPFNSLMTLYAK---TGHPEKIPAIIQEMKA-----SSIM--------PDSYTYNVWMRALAAVNDISGAE 213 (490)
Q Consensus 155 -----~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------p~~~~~~~l~~~~~~~~~~~~a~ 213 (490)
+.+...+......+.. .|++++|..+|+++.+ .... .+..++..+..++...|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 0113333444444444 8999999999999987 3111 23456778889999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 011226 214 RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
..++++.+.. +. ...+..+...+...|++++|...++.+..... .+...+..+...+...|++++|...++++...
T Consensus 258 ~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 333 (514)
T 2gw1_A 258 EDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333 (514)
T ss_dssp HHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999863 33 88899999999999999999999999987543 46778999999999999999999999999887
Q ss_pred CCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----
Q 011226 294 FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN---- 368 (490)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~---- 368 (490)
.+. +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+.... ++
T Consensus 334 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 411 (514)
T 2gw1_A 334 DPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411 (514)
T ss_dssp CSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSC
T ss_pred Chh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHH
Confidence 654 5678888999999999999999999999887654 6788899999999999999999999999874222 11
Q ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 011226 369 AKTWEIFSDYYLR---NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 369 ~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
...+..+...+.. .|++++|...++++.+.. ..+...+..+..++.+.|++++|...++++.+..| .+.
T Consensus 412 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~ 483 (514)
T 2gw1_A 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TME 483 (514)
T ss_dssp SHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SHH
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-ccH
Confidence 3378888999999 999999999999999986 14578899999999999999999999999999998 666
Q ss_pred HhHHHH
Q 011226 446 EVFEPL 451 (490)
Q Consensus 446 ~~~~~l 451 (490)
..+..+
T Consensus 484 ~~~~~~ 489 (514)
T 2gw1_A 484 EKLQAI 489 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.3e-21 Score=178.40 Aligned_cols=318 Identities=10% Similarity=0.017 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 204 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 204 (490)
.+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 334444444444444444444444444321 223344444444444444444444444444432 113334444444444
Q ss_pred HcCChhHHHHHHHHHHHCCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 011226 205 AVNDISGAERVIEEMKRDGRVA---ADWTTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLSAYQF 269 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (490)
..|++++|...|+++.+. .+ .+...+..+ ...+...|++++|.+.++++.+... .+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 455555555555544443 12 222222222 3555555666666666665555332 34455555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH------------
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT------------ 337 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 337 (490)
+..++...|++++|...++.+....+. +...+..+...+...|++++|...++...+..+. +...+
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 555566666666666666655554322 3445555555566666666666666665554333 22222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 338 NVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 338 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
..+...+...|++++|...++++.+.... +. ..+..+...+...|++++|+..++++.+.. ..+...+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 309 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-------PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccHHHH
Confidence 23366788899999999999999885322 22 224456778889999999999999999876 1368889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
..+...+...|++++|...|+++.+..| .+..++..+..+....
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 7888888888776543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.2e-21 Score=186.97 Aligned_cols=392 Identities=10% Similarity=0.001 Sum_probs=300.9
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHh
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFV 114 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 114 (490)
+...+...++...+.. +.++..+..+...+.+.|++++|++.++.+.+.+ +.+...+..+..++...|++++|...|+
T Consensus 40 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 40 NFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp CCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666777777766643 4678889999999999999999999999998876 4567888999999999999999999997
Q ss_pred hcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCcc-----------------------------
Q 011226 115 DLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELN------LGFSSM----------------------------- 159 (490)
Q Consensus 115 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~----------------------------- 159 (490)
.+.. .|+ .....+..+...+....|...++.+.... ..|+..
T Consensus 118 ~~~~-~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 118 VLSL-NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred HHhc-CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 4433 222 22333445556666778888888876531 111111
Q ss_pred -hHHHHHHHHHh--------cCCCCcHHHHHHHHHHCCCCCC--------HhhHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 011226 160 -PFNSLMTLYAK--------TGHPEKIPAIIQEMKASSIMPD--------SYTYNVWMRALAAVNDISGAERVIEEMKRD 222 (490)
Q Consensus 160 -~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 222 (490)
....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++|...++.+.+.
T Consensus 195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 11122211111 247889999999988753 33 234667778889999999999999999995
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhH
Q 011226 223 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY 302 (490)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (490)
.|+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++....+. +...+
T Consensus 273 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~ 347 (537)
T 3fp2_A 273 ---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPY 347 (537)
T ss_dssp ---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHH
T ss_pred ---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 35588899999999999999999999999988654 46788999999999999999999999999987654 56788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CCHHHHHHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-----PNAKTWEIFSD 377 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~ 377 (490)
..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...|+++.+.... .....+.....
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 88999999999999999999999887655 6778999999999999999999999998864211 11122344456
Q ss_pred HHHhc----------CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 378 YYLRN----------GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 378 ~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
.+... |++++|+..++++.+... .+...+..+..++.+.|++++|...|+++.+..+ .+...
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~ 498 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-------RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR-TMDEK 498 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHH
Confidence 67777 999999999999999861 4578899999999999999999999999999987 44443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=2.4e-20 Score=171.55 Aligned_cols=302 Identities=11% Similarity=-0.021 Sum_probs=226.7
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
+...+..+...+...|++++|+..|+.+.+.. +.+...+..+..++...|++++|...|+.+.. .+.+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34567778888899999999999999998776 45677888899999999999999999999888 44467889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC----CcchHHHH------------HHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGF----SSMPFNSL------------MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTY 196 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 196 (490)
+...|++++|...|++..+.. | +...+..+ ...+...|++++|..+++++.+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 999999999999999998865 4 33344444 466777888888888888887653 3356677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH--------
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ-------- 268 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------- 268 (490)
..+..++...|++++|...++.+.+. .+.+..++..+...+...|++++|...++...+... .+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHH
Confidence 77788888888888888888888876 566777888888888888888888888888776433 2233322
Q ss_pred ----HHHHHHHhcCChhHHHHHHHHHHHhCCCCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 269 ----FLITLYGQTGNLSEVYRIWRSLRLAFPNTAN---ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 269 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
.+...+.+.|++++|...++.+....+.... ..+..+...+...|++++|...++...+..+. +..++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 313 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 2255577778888888888877765543111 12344667777788888888888877766443 667777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 011226 342 GAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
..+...|++++|...|+++.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 7788888888888888877765
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.6e-20 Score=170.76 Aligned_cols=291 Identities=11% Similarity=-0.032 Sum_probs=213.5
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 235 (490)
.+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+. .+.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 455566666666666677777777777666543 224445555666777777777777777777775 45566677777
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC
Q 011226 236 ASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 236 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 314 (490)
...+...| ++++|.+.|++...... .+...|..+...+...|++++|...++++.+..+. +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 77777777 77777777777766432 34566777777777777777777777777766543 34556667777788888
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHH
Q 011226 315 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG--------ADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 315 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
+++|...++...+..+. +...+..+...+...|++++|...++++.+.. .......+..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 88888888887776554 66778888888888888888888888887631 1233567888888888999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-HhcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY-AAAGR 460 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 460 (490)
+|+..++++.+... .+...+..+..++...|++++|...++++.+..| .+..++..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLIP-------QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHST-------TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhCc-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence 99999999888761 3577888888899999999999999999988887 7888888888888 44454
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.3e-19 Score=163.04 Aligned_cols=290 Identities=7% Similarity=-0.072 Sum_probs=245.2
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 011226 189 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ 268 (490)
Q Consensus 189 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 268 (490)
.+.+...+..+...+...|++++|..+|+++.+. .+.+...+..++..+...|++++|...++++.+... .+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 3456677888899999999999999999999987 677777888889999999999999999999988653 4677888
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 269 FLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 269 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
.+...+...| ++++|...|+.+....+. +...+..+...+...|++++|...++.+.+..+. +...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 9999999999 999999999999876543 4667889999999999999999999999887665 567777899999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC--CcCCHHHHHHHHHHHHhcCC
Q 011226 348 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK--WVPSSETIRTFMRHFEQEKD 425 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~ 425 (490)
|++++|...++++.+... .+...+..+...+...|++++|...++++.+........ .......+..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999998643 367888999999999999999999999998863111000 12346789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHH
Q 011226 426 VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLE 485 (490)
Q Consensus 426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~ 485 (490)
+++|...++++.+..+ .+..++..+..+|...|+..+++...-+...+.|+........
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHH
Confidence 9999999999999998 7899999999999999998888877777778888765544333
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=5.8e-18 Score=162.48 Aligned_cols=371 Identities=11% Similarity=-0.007 Sum_probs=308.1
Q ss_pred CCCHHhHHHHHHHHhc----cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----hCCHHHHHHHHhhcCCCCCCH
Q 011226 52 RVFKWEVGDTLKKLRD----RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAK----VQGIDAAENYFVDLPETSKNH 123 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 123 (490)
.-++.....+...|.. .+++++|+..|+...+.| +...+..+...|.. .+++++|.++|+...+. .+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCH
Confidence 3456777777777777 899999999999998776 56677888888888 89999999999987663 367
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCCHhh
Q 011226 124 LTYGSLLNCYCK----ELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYT 195 (490)
Q Consensus 124 ~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~ 195 (490)
..+..|...|.. .+++++|++.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888888 889999999999998876 56778888888887 788999999999998875 6778
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 196 YNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 196 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+..+...|.. .++.++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888888888 899999999999999875 45677788888887 889999999999988754 45677
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc-----CChhhHHHHHHHHHhcCCCCChhhHH
Q 011226 268 QFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL-----KDLPGAEKCFKEWESGCATYDIRVTN 338 (490)
Q Consensus 268 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~ 338 (490)
..+...|.. .++.++|+..|+...+.+ +...+..+...|... ++.++|...|+...+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 778788887 899999999999987654 445667788888877 89999999999998865 456777
Q ss_pred HHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 339 VMIGAYAKEG---RLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 339 ~li~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
.+...|...| +.++|...|++..+.| +...+..+...|.. .+++++|+.+|++..+.+ +..
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---------~~~ 400 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---------LSA 400 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---------CHH
Confidence 8888888766 7899999999999863 67788888888888 899999999999999875 467
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHh
Q 011226 412 TIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDD--LGVEVFEPLIRTYAA 457 (490)
Q Consensus 412 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 457 (490)
.+..+...|.. .+++++|...|+++.+.++. .+..+...|...+..
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 78888888988 89999999999999999852 255566555554443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=7.9e-20 Score=168.89 Aligned_cols=306 Identities=11% Similarity=-0.002 Sum_probs=214.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHH-HHHHHHHCCC---CCCHhhHHHHHHHHHHcCChhHH
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPA-IIQEMKASSI---MPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
+.++.+...|+.+...+ |+ ++...|++++|.. .|++...... ..+...+..+...+...|++++|
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 83 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNA 83 (368)
T ss_dssp ------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHH
Confidence 44455555555555443 22 1223466777777 6665543211 11244566777788888888888
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
...|+++.+. .+.+..++..+..++...|++++|...|+++.+... .+..++..+..+|...|++++|...++.+..
T Consensus 84 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 84 VLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888876 566777788888888888888888888888777543 4667777788888888888888888888877
Q ss_pred hCCCCCchhHHH--------------HHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 293 AFPNTANISYLN--------------MIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 293 ~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
..+......... .+..+...|++++|...++.+.+..+.. +..++..+...|...|++++|...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 654322221111 2333448899999999999998765543 5788899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 358 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 358 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
+++.+... .+...+..+...+...|++++|+..++++++.. ..+...+..+..+|.+.|++++|...++++.
T Consensus 241 ~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 241 TAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998632 357889999999999999999999999999986 1458899999999999999999999999999
Q ss_pred HcCCCCC-----------HHhHHHHHHHHHhcCCCcHHH
Q 011226 438 KAVDDLG-----------VEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 438 ~~~~~~~-----------~~~~~~l~~~~~~~g~~~~~~ 465 (490)
+..| .+ ..+|..+..+|...|+..++.
T Consensus 313 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 313 NMQR-KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHH-TC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HhCC-CCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 8776 34 789999999999999965544
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=2.8e-20 Score=171.95 Aligned_cols=272 Identities=12% Similarity=-0.019 Sum_probs=178.3
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 160 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 160 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
.+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...|+++.+. .+.+..++..+...+
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSF 142 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34444444444444444444444444432 123344444444555555555555555555544 334444555555555
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHH---------------HHHHHHHhcCChhHHHHHHHHHHHhCCCC-CchhHH
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQ---------------FLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANISYL 303 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 303 (490)
...|++++|.+.++++...... +...+. ..+..+...|++++|...++++....+.. +..++.
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 5555555555555555443221 111111 02333348889999999999988876542 466788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
.+...+...|++++|...++.+....+. +..++..+...+...|++++|...|+++.+... .+...+..+...|.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCC
Confidence 8889999999999999999998877554 678889999999999999999999999988632 36778889999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCC---CC-CcCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 384 DMKLAVDCLEKAIDTGRGDG---GK-WVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~---~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
++++|...|+++.+...... .. ......+|..+..++...|++++|..++++.+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999999988751100 00 00126889999999999999999999887543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.1e-17 Score=162.28 Aligned_cols=398 Identities=9% Similarity=0.016 Sum_probs=288.8
Q ss_pred CCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHH
Q 011226 51 KRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLL 130 (490)
Q Consensus 51 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 130 (490)
.|.+...+..++. +.+.|++++|..+|+.+.+.. +.+...|..++..+.+.|+++.|.++|+++....|+...|...+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4557778888887 477899999999999998875 45677888999999999999999999999999668888888777
Q ss_pred HHH-HHcCCHHHHHH----HHHHHHhC-CCCC-CcchHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCCHh
Q 011226 131 NCY-CKELMTEKAEA----LLEKMKEL-NLGF-SSMPFNSLMTLYAK---------TGHPEKIPAIIQEMKASSIMPDSY 194 (490)
Q Consensus 131 ~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~p~~~ 194 (490)
... ...|+++.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677777665 77766542 4333 45677777776654 678899999999998731111123
Q ss_pred hHHHHHHHH-------------HHcCChhHHHHHHHHHH------HCC--CCCCC--------HHHHHHHHHHHHHc---
Q 011226 195 TYNVWMRAL-------------AAVNDISGAERVIEEMK------RDG--RVAAD--------WTTFSNLASIYVEA--- 242 (490)
Q Consensus 195 ~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~--~~~~~--------~~~~~~l~~~~~~~--- 242 (490)
.|....... ...+++..|..++.... +.. ..+|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 343322211 12345677777766532 211 02443 24555555433332
Q ss_pred -CCH----HHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHhCCCCCchhHH
Q 011226 243 -GLF----EKAERALKELENRNAHRDLSAYQFLITLYGQ-------TGNLS-------EVYRIWRSLRLAFPNTANISYL 303 (490)
Q Consensus 243 -~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 303 (490)
++. +++..+|++.....+ .+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...+.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 477889999887543 467888888888775 69987 8999999987521222466788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHh
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYD-IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY-YLR 381 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 381 (490)
.++..+.+.|++++|..+|+.+.+..+. + ...|..++..+.+.|++++|..+|++..+... .+...|...... +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHH
Confidence 8889999999999999999999986443 3 35888999999999999999999999998522 233333322222 346
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C--CHHhHHHHHHHHHh
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-L--GVEVFEPLIRTYAA 457 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~ 457 (490)
.|+.++|..+|++.++.. | +...|..++..+.+.|+.++|..+|++++...+. | ....|..++.....
T Consensus 404 ~~~~~~A~~~~e~al~~~--------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999886 5 5889999999999999999999999999997651 1 24489888999889
Q ss_pred cCCC
Q 011226 458 AGRT 461 (490)
Q Consensus 458 ~g~~ 461 (490)
.|+.
T Consensus 476 ~G~~ 479 (530)
T 2ooe_A 476 IGDL 479 (530)
T ss_dssp SSCH
T ss_pred cCCH
Confidence 9983
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.8e-19 Score=166.32 Aligned_cols=267 Identities=10% Similarity=-0.056 Sum_probs=210.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHH
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR 201 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 201 (490)
+...|..+...+.+.|++++|.+.|+++.+... .+..+|..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445688888888899999999999998888653 467788888889999999999999999888764 335778888889
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CCHHHHHHH
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWT----------TFSNLASIYVEAGLFEKAERALKELENRNAH-RDLSAYQFL 270 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l 270 (490)
++...|++++|...|+++.+.. +.+.. .+..+...+...|++++|...|+++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988752 22222 2334578888899999999999999886543 167888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 011226 271 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 350 (490)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (490)
...|...|++++|...|+++.+..+. +..++..+..+|...|++++|...|+.+.+..+. +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887653 5678889999999999999999999998887655 688899999999999999
Q ss_pred hHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011226 351 ENAEELKERARRRGAD-----------PNAKTWEIFSDYYLRNGDMKLAVDCLEK 394 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (490)
++|...|+++.+.... .+...|..+..++...|+.+.+..+..+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999864211 1256788899999999999888877665
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=5.9e-16 Score=148.51 Aligned_cols=356 Identities=13% Similarity=0.049 Sum_probs=295.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----hCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHH----cCCHHHHHH
Q 011226 73 PALKLSENMEKRGMNKTVSDQAIHLDLVAK----VQGIDAAENYFVDLPETSKNHLTYGSLLNCYCK----ELMTEKAEA 144 (490)
Q Consensus 73 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~ 144 (490)
.+++.++...+.| +...+..+...|.. .++++.|..+|+...+. .+...+..|...|.. .+++++|.+
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 3455566655554 56677777778877 79999999999987663 467788889999998 899999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCChhHHHHHH
Q 011226 145 LLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAERVI 216 (490)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~ 216 (490)
.|++..+.| +...+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++|...|
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999875 56777888888888 789999999999998876 66778888888887 78999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCChhHHHHHHH
Q 011226 217 EEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWR 288 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 288 (490)
++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 175 ~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 175 SKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9999864 57788889999988 899999999999998854 56678888888886 789999999999
Q ss_pred HHHHhCCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc-----CChhHHHHHHHH
Q 011226 289 SLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-----GRLENAEELKER 359 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~ 359 (490)
+..+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|...|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 987754 34566677777877 899999999999988764 556777888888887 899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh----cCChHHHHHH
Q 011226 360 ARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGF 432 (490)
Q Consensus 360 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 432 (490)
..+.| +...+..+...|...| ++++|+++|++..+.+ ++..+..+...|.. .+++++|...
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---------EKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99864 5567777777787766 7899999999999875 56788889999988 8999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHh----cCCCcHHHH
Q 011226 433 LEILKKAVDDLGVEVFEPLIRTYAA----AGRTSPVML 466 (490)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~ 466 (490)
|++..+.+ ++.++..|...|.. .++..+++.
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999876 47888999999988 677555543
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=6.2e-19 Score=162.71 Aligned_cols=275 Identities=12% Similarity=-0.041 Sum_probs=223.2
Q ss_pred CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH
Q 011226 156 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 235 (490)
Q Consensus 156 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 235 (490)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|+..|+++.+. .+.+..++..+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL 139 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 355668999999999999999999999998864 347788999999999999999999999999997 67788999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-CchhHHHH
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHR---------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNM 305 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 305 (490)
...|...|++++|...|+++.+..... ....+..+...+...|++++|...++++....+.. +..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999999998743210 12233445788999999999999999999876542 56788999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 385 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 385 (490)
...+...|++++|...++.+.+..+. +..+|..+..+|...|++++|...|+++.+... .+...+..+...|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887665 788999999999999999999999999998632 2578899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC-----CcCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011226 386 KLAVDCLEKAIDTGRGDGGK-----WVPSSETIRTFMRHFEQEKDVDGAEGFLEI 435 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 435 (490)
++|...|+++++........ ...+..+|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999875110000 001357889999999999999988887765
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=7e-17 Score=154.45 Aligned_cols=270 Identities=11% Similarity=-0.065 Sum_probs=176.3
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC------
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKR--------GMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE------ 118 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 118 (490)
.....++.+...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...+++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566777888888999999999999887432 1122345788889999999999999888876643
Q ss_pred --CC-CCHhHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCcchHHHHHHH---HHhcCCCCcHHHHHHHHHHCCCC
Q 011226 119 --TS-KNHLTYGSLLNCYCKE--LMTEKAEALLEKMKELNLGFSSMPFNSLMTL---YAKTGHPEKIPAIIQEMKASSIM 190 (490)
Q Consensus 119 --~~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 190 (490)
.. ....++..+..++... +++++|++.|++..+..+ -+...+..+... +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 11 2245666665555554 578999999999988652 234444444444 345678889999999888754 2
Q ss_pred CCHhhHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHH
Q 011226 191 PDSYTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSA 266 (490)
Q Consensus 191 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 266 (490)
.+...+..+...+.. .|+.++|.+.+++.... .+.+..++..+...|...|++++|...+++..+..+ .+..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHH
Confidence 245555555544444 46788999999999887 677888899999999999999999999999887543 35566
Q ss_pred HHHHHHHHHhcC-------------------ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 011226 267 YQFLITLYGQTG-------------------NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 267 ~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 327 (490)
+..+..+|...+ ..+.|...++......+. +...+..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 666665554321 123344444444443322 233444445555555555555555555444
Q ss_pred c
Q 011226 328 G 328 (490)
Q Consensus 328 ~ 328 (490)
.
T Consensus 363 ~ 363 (472)
T 4g1t_A 363 K 363 (472)
T ss_dssp S
T ss_pred c
Confidence 3
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=3.7e-18 Score=154.77 Aligned_cols=272 Identities=11% Similarity=-0.050 Sum_probs=185.1
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 160 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 160 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+. .+.+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHHHHH
Confidence 34444444555555555555555554432 124444555555555666666666666665554 344555555566666
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHhCCCCCchhHHH
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQFL--------------IT-LYGQTGNLSEVYRIWRSLRLAFPNTANISYLN 304 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (490)
...|++++|.+.++++...... +...+..+ .. .+...|++++|...++++.+..+. +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 6666666666666665543221 11122221 22 367778889999999988877654 5677888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD 384 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 384 (490)
+...+...|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcc
Confidence 888999999999999999998877654 678889999999999999999999999988642 367788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC-----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKW-----VPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+++|.+.++++.+......... ..+...+..+..++.+.|++++|..++++.++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999998761100000 00377889999999999999999999876544
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.3e-17 Score=151.09 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=222.0
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|++++|...++++.+... .+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHH
Confidence 3445677888999999999999999999987 677888999999999999999999999999988643 4678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHH--------------HH-HHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM--------------IQ-VLVNLKDLPGAEKCFKEWESGCATYDIRV 336 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 336 (490)
..+...|++++|...++++....+. +...+..+ .. .+...|++++|...++.+.+..+. +...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence 9999999999999999999886543 22333333 22 377789999999999999887665 7889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF 416 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l 416 (490)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..++++.+.. ..+...+..+
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l 246 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-------PGYVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHH
Confidence 99999999999999999999999998643 367888999999999999999999999999986 1458889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-----------CHHhHHHHHHHHHhcCCCcHHH
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDL-----------GVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
..++...|++++|...++++.+..+.. +..+|..+..+|...|+..++.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999988732 6889999999999999965554
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.8e-16 Score=151.41 Aligned_cols=378 Identities=13% Similarity=0.069 Sum_probs=275.0
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 011226 78 SENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGF 156 (490)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 156 (490)
|+...+.. +-+...|..++. +.+.|+++.|..+|+.+.. .+.+...|..++..+.+.|++++|.++|++..... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C
Confidence 44444444 346778888888 4778999999999999988 55567789999999999999999999999999865 6
Q ss_pred CcchHHHHHHHH-HhcCCCCcHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHH---------cCChhHHHHHHHHHH
Q 011226 157 SSMPFNSLMTLY-AKTGHPEKIPA----IIQEMKAS-SIMP-DSYTYNVWMRALAA---------VNDISGAERVIEEMK 220 (490)
Q Consensus 157 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 220 (490)
+...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777887777643 45788888776 67766543 5444 45667777776554 789999999999998
Q ss_pred HCCCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHH------cc---CCCC--------HHHHHHH
Q 011226 221 RDGRVAADWTTFSNLASIY-------------VEAGLFEKAERALKELEN------RN---AHRD--------LSAYQFL 270 (490)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~A~~~~~~~~~------~~---~~~~--------~~~~~~l 270 (490)
+.. .......|....... .+.++++.|..+++.+.. .. ++|+ ...|...
T Consensus 158 ~~P-~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 158 VNP-MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred hch-hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 842 222223443332211 123567777777766321 11 2333 2455555
Q ss_pred HHHHHhc----CCh----hHHHHHHHHHHHhCCCCCchhHHHHHHHHHh-------cCChh-------hHHHHHHHHHh-
Q 011226 271 ITLYGQT----GNL----SEVYRIWRSLRLAFPNTANISYLNMIQVLVN-------LKDLP-------GAEKCFKEWES- 327 (490)
Q Consensus 271 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~- 327 (490)
+...... ++. ..+..+|++.....+. +...|..++..+.. .|+++ +|..+++...+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 5433222 232 3777889998887543 56677777777765 79987 89999999986
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 011226 328 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-A-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK 405 (490)
Q Consensus 328 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 405 (490)
..+ .+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+...
T Consensus 316 ~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~----- 387 (530)
T 2ooe_A 316 LLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR----- 387 (530)
T ss_dssp TCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-----
T ss_pred hCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-----
Confidence 333 36889999999999999999999999999985 454 2 4788888888899999999999999998751
Q ss_pred CcCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHHhhC
Q 011226 406 WVPSSETIRTFMRH-FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKME 472 (490)
Q Consensus 406 ~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~ 472 (490)
.+...+...+.. +...|++++|..+|+++++..| .++..|..++..+.+.|+ .+..+++.....
T Consensus 388 --~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 388 --TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp --CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred --CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 233444333322 3468999999999999999988 889999999999999999 455666665554
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=1.7e-17 Score=146.87 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=98.1
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+..++..+...+...|+.++|++.++++...+..|.+...+..+...+...|++++|++.+++ +.+...+..++
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~ 137 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHH
Confidence 344444444455555555555555555544321133344444444555555555555555544 23444555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhH---HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISY---LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG 348 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 348 (490)
..+.+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+..+. +...++.+..++...|
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcC
Confidence 55555555555555555555443 222111 11122223335555666666555554332 5555555555666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL-AVDCLEKAIDTG 399 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 399 (490)
++++|...|+++.+.... +..++..++..+...|+.++ +.++++++.+..
T Consensus 215 ~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 666666666665554222 44455555555555555543 345555555554
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.1e-16 Score=151.18 Aligned_cols=362 Identities=12% Similarity=0.006 Sum_probs=254.9
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHhhcCC----------CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----
Q 011226 88 KTVSDQAIHLDLVAKVQGIDAAENYFVDLPE----------TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELN---- 153 (490)
Q Consensus 88 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---- 153 (490)
.....|+.+..++...|++++|++.|++..+ .+....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999987543 12345689999999999999999999998876521
Q ss_pred --CCC-CcchHHHHHHHHHh--cCCCCcHHHHHHHHHHCCCCCC-HhhHHHHHHH---HHHcCChhHHHHHHHHHHHCCC
Q 011226 154 --LGF-SSMPFNSLMTLYAK--TGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRA---LAAVNDISGAERVIEEMKRDGR 224 (490)
Q Consensus 154 --~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 224 (490)
..+ ...++..+..++.. .+++++|+..|++..+.. |+ +..+..+..+ +...++.++|++.+++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-- 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-- 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--
Confidence 011 23455555555554 356899999999998854 43 4444444444 44567888999999999886
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch
Q 011226 225 VAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 300 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (490)
.+.+..++..+...+.. .+++++|.+.+++...... .+...+..+...|...|++++|...+++..+..+. +..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 56777777777666555 4678899999999887654 46778889999999999999999999999887654 445
Q ss_pred hHHHHHHHHHh-------------------cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 301 SYLNMIQVLVN-------------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 301 ~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
++..+..+|.. .+..+.|...++...+..+. +...+..+...|...|++++|...|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 55555555432 12356777888887776554 66788889999999999999999999999
Q ss_pred HcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 362 RRGADPNAK--TWEIFSD-YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 362 ~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
+....|... .+..+.. .....|++++|+..|++.++.. |+..... +....+..++++.++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--------~~~~~~~---------~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--------QKSREKE---------KMKDKLQKIAKMRLS 424 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--------CCCHHHH---------HHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------cccHHHH---------HHHHHHHHHHHHHHH
Confidence 864333221 1222222 3457899999999999999887 6543322 223455667788888
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCC
Q 011226 439 AVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 474 (490)
Q Consensus 439 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~ 474 (490)
.+| .++.+|..|..+|...|+..+|+...-++..+
T Consensus 425 ~~p-~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 425 KNG-ADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HCC--CTTHHHHHHHHHHHHHHCC------------
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888 88999999999999999977776544444443
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=1.9e-17 Score=146.67 Aligned_cols=253 Identities=7% Similarity=0.035 Sum_probs=126.0
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTV--SDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTE 140 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 140 (490)
+.....|+++.|+..++...... |+. .....+..++...|+++.|+..++.. .+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHH
Confidence 33444566666666655543322 222 23344455666666666666555442 2344455555555666666666
Q ss_pred HHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 141 KAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 141 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
+|++.++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666555443232 33334444555566666666665554 234455555555556666666666666665
Q ss_pred HHCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 011226 220 KRDGRVAADWTT--FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 297 (490)
Q Consensus 220 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (490)
.+. .+.+... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.....+.
T Consensus 157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 553 1211111 0112222223355555555555555542 234455555555555555555555555555554332
Q ss_pred CchhHHHHHHHHHhcCChhh-HHHHHHHHHhcC
Q 011226 298 ANISYLNMIQVLVNLKDLPG-AEKCFKEWESGC 329 (490)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 329 (490)
+..++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33444455555555555543 344555554443
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=4.5e-18 Score=153.80 Aligned_cols=283 Identities=13% Similarity=0.126 Sum_probs=96.3
Q ss_pred hhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHH
Q 011226 102 KVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAII 181 (490)
Q Consensus 102 ~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 181 (490)
+.|++++|.++++++.. +.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55667777777777732 347777777777777777777777542 45566777777777777777777766
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 182 QEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 182 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
+...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp --------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 555543 3345666667777777777777666653 244556777777777777777777777654
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI 341 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 341 (490)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 24666777777777777777777665 14566777777777777777774433321 12333344566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC------CHHHHHH
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP------SSETIRT 415 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p------~~~~~~~ 415 (490)
..|.+.|++++|..+++...... .-....|+.+..+|++- ++++..+.++.....-- +.| +...|..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~in-----i~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVN-----IPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSC-----HHHHHHHHHTTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHH
Confidence 66777777777777776666543 23445555555555443 23333333332222110 111 2344555
Q ss_pred HHHHHHhcCChHHHHH
Q 011226 416 FMRHFEQEKDVDGAEG 431 (490)
Q Consensus 416 l~~~~~~~g~~~~a~~ 431 (490)
+.-.|...++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 5555666666665544
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=8.1e-17 Score=145.63 Aligned_cols=353 Identities=10% Similarity=0.054 Sum_probs=165.5
Q ss_pred CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHH
Q 011226 53 VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNC 132 (490)
Q Consensus 53 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 132 (490)
+++..|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++...+..+++.+.+.++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHH
Confidence 33468889999999999999999999653 577789999999999999999999888887755667889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 212 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 212 (490)
|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+ ..|..++.++.+.|++++|
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~A 167 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 167 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHH
Confidence 999999999998884 277789999999999999999999999966 4689999999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|.+++|..+++....
T Consensus 168 Vea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 168 VDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 9999988 267899999999999999999966554422 2333455688899999999999999998875
Q ss_pred hCCCCCchhHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 011226 293 AFPNTANISYLNMIQVLVNL--KDLPGAEKCFKEWESGCATY------DIRVTNVMIGAYAKEGRLENAEELKERARRRG 364 (490)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 364 (490)
.. ......|+.+.-+|++- ++..+..+.|.. +.+++| +...|..+.-.|...++++.|.... .+.
T Consensus 236 le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm---~~h- 308 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH- 308 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS-
T ss_pred Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH---HhC-
Confidence 54 33455666666666653 333334443332 111211 5678899999999999999887753 332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH-------------HHHHHHHHhcCChHHHHH
Q 011226 365 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI-------------RTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~-------------~~l~~~~~~~g~~~~a~~ 431 (490)
.|+...-..+.....+..+.+--.+...-.++.. |. .+ +..+..+.+.|+..-+..
T Consensus 309 -~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~--------p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 309 -PTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK--------PL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp -TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC--------GG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHH
T ss_pred -ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcC--------HH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHH
Confidence 1222122222222233333332222111111111 11 12 233444566666666666
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 432 FLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
.++.+... .+..+-.+|-..|....+
T Consensus 378 yl~~v~~~---n~~~vnealn~l~ieeed 403 (449)
T 1b89_A 378 YLRSVQNH---NNKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHHTT---CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh---hHHHHHHHHHHHHHhhhh
Confidence 66555543 456666666666766655
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.9e-16 Score=136.99 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=186.0
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC--CC----HHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH--RD----LSA 266 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~ 266 (490)
...+..+...+...|++++|...|+++.+. . .+...+..+..++...|++++|...+++..+.... ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 345667777888888888888888888876 4 66777888888888888888888888887664321 12 467
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 346 (490)
+..+..++...|++++|...|++.....+ + ...+...|++++|...++.+....+. +...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence 77788888888888888888888877543 2 23456667888888888888776544 56778888888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh
Q 011226 347 EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 426 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 426 (490)
.|++++|...++++.+... .+...+..+...+...|++++|+..++++++... .+...+..+..++...|++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHhhH
Confidence 9999999999999888643 3677888888899999999999999999988861 3478888899999999999
Q ss_pred HHHHHHHHHHHHcC------CCCCHHhHHHHHH
Q 011226 427 DGAEGFLEILKKAV------DDLGVEVFEPLIR 453 (490)
Q Consensus 427 ~~a~~~~~~~~~~~------~~~~~~~~~~l~~ 453 (490)
++|...++++.+.. | .+..++..+..
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p-~~~~~~~~l~~ 255 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGS-SAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCCC-chHHHHHHHHH
Confidence 99999999998877 5 56666655544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=9.9e-15 Score=147.34 Aligned_cols=348 Identities=14% Similarity=0.122 Sum_probs=269.5
Q ss_pred cCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHH
Q 011226 50 KKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGM--NKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYG 127 (490)
Q Consensus 50 ~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 127 (490)
....++..+...++.|...|.+.+|+++++++...+- .-+...-+.++....+. +.....+..+.+... + ..
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~--d---~~ 1053 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY--D---AP 1053 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc--c---HH
Confidence 3456788888899999999999999999999974431 12334455566666565 556666666665431 2 34
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 128 SLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 128 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.+++++.. +..+|..+..++...|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 477788889999999999998531 1222233332 6788999999988552 4678889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 208 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++++|+..|.+. .+...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 999999999553 467788889999999999999999998877754 33334445888999998888644432
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
. .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 1 235566777999999999999999999984 47889999999999999999999876 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+..++ -....
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-aH~gm 1316 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----------VVHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGM 1316 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-hHhHH
Confidence 6789999999999999999988876542 24566777899999999999999999999998885 78888
Q ss_pred HHHHHHHHHhcCC
Q 011226 448 FEPLIRTYAAAGR 460 (490)
Q Consensus 448 ~~~l~~~~~~~g~ 460 (490)
|+-|...|++-.-
T Consensus 1317 ftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1317 FTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHHHHHhCCH
Confidence 9888888887655
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=9.8e-19 Score=170.65 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=124.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKE---LNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 199 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 199 (490)
..+||+||.+|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC------HHHHHHHHH
Q 011226 200 MRALAAVNDI-SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD------LSAYQFLIT 272 (490)
Q Consensus 200 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 272 (490)
|.++++.|+. +.|.++|++|.+.| +.||..+|+.++....+. .+++.++++ ..+..|+ ..+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG-~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT-CCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC-CCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999984 78999999999999 999999999998766654 334444444 2344443 455566777
Q ss_pred HHHhcC
Q 011226 273 LYGQTG 278 (490)
Q Consensus 273 ~~~~~~ 278 (490)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=2.5e-15 Score=132.22 Aligned_cols=255 Identities=11% Similarity=0.013 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLI 271 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 271 (490)
..+......+...|++++|+..|+++.+. .+.+...+..+..+|...|++++|...+++.......++ ...|..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556677888899999999999999886 556666888888899999999999999998887332222 33478888
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
..+...|++++|...|+...+..+. +...+..+...+...|++++|...++...+..+. +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999998887654 5577888999999999999999999998877554 6677777773444556999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCCCcCC------HHHHHHHHHHHHh
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPS------SETIRTFMRHFEQ 422 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~ 422 (490)
+|...|+++.+.... +...+..+...+...|+ +++|...++++.+... -.|+ ...|..+...|..
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-----PGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-----GGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-----cccccchHHHHHHHHHHHHHHHH
Confidence 999999999986322 46677777888888888 8889999998887631 1132 3678889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 423 EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
.|++++|...++++.+..| .+..++..+.......+
T Consensus 234 ~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDP-TNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHhcCc-cHHHHHHHhhhhhcccc
Confidence 9999999999999999998 88888888776655443
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=164.68 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=99.5
Q ss_pred cchHHHHHHHHHhcCCCCcHHHHHHHHHH---CCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHH
Q 011226 158 SMPFNSLMTLYAKTGHPEKIPAIIQEMKA---SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 234 (490)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (490)
..|||+||++|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.| +.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 46788888888888888888888877753 4788888888888888888888888888888888888 8888888888
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc
Q 011226 235 LASIYVEAGLF-EKAERALKELENRNAHRDLSAYQFLITLYGQT 277 (490)
Q Consensus 235 l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 277 (490)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 88888888874 67888888888888888888888887655554
No 38
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.73 E-value=6.6e-15 Score=134.72 Aligned_cols=251 Identities=11% Similarity=0.068 Sum_probs=212.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
...|..+..++...|++++|+..++++++. .+.+..+|+.+..++...|+ +++|+..|+++..... -+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 355777788888999999999999999997 67788899999999999996 9999999999988654 4678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK-EGRL 350 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~ 350 (490)
.++...|++++|+..|+++.+..+. +...|..+..++...|++++|...++++.+..+. +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999987764 6778888999999999999999999999988776 88899999999999 6665
Q ss_pred hHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc
Q 011226 351 ENA-----EELKERARRRGADPNAKTWEIFSDYYLRNG--DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE 423 (490)
Q Consensus 351 ~~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 423 (490)
++| +..+++.++.... +...|..+...+...| ++++|++.+.++ +.. ..+...+..++.+|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-------p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-------HSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-------CCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-------CCCHHHHHHHHHHHHHH
Confidence 888 5889888886433 5678888888888888 689999999888 443 14578889999999887
Q ss_pred C---------ChHHHHHHHHHH-HHcCCCCCHHhHHHHHHHHHhc
Q 011226 424 K---------DVDGAEGFLEIL-KKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 424 g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
| ..++|.++++++ .+.+| .....|..+...+...
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHH
Confidence 4 358999999999 88888 8888999888887653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.9e-15 Score=131.70 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC--C----chhH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT--A----NISY 302 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 302 (490)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++...+..+.. + ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577889999999999999999999999877 778899999999999999999999999988754321 2 4678
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN 382 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 382 (490)
..+...+...|++++|...++...+..+. ...+...|++++|...++.+..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 88999999999999999999999886543 2446677889999999999998532 2456778888899999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCc
Q 011226 383 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS 462 (490)
Q Consensus 383 g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 462 (490)
|++++|+..++++.+... .+...+..+..++...|++++|...++++.+..| .+..+|..+..+|...|+..
T Consensus 153 ~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred cCHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999861 4588899999999999999999999999999998 88999999999999999966
Q ss_pred HHHHHHHhhCCCC------CCHHHHHHHHH
Q 011226 463 PVMLRRLKMEKVE------VSEASKKLLEA 486 (490)
Q Consensus 463 ~~~~~~m~~~~~~------p~~~~~~~l~~ 486 (490)
+++....+...+. |+.........
T Consensus 225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 225 SALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 6654444444444 66555444433
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=3.2e-13 Score=136.57 Aligned_cols=375 Identities=9% Similarity=0.039 Sum_probs=269.5
Q ss_pred CCccHHHHHHHHHHhcCC--CCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHH
Q 011226 35 SDVSVRQQLNQFLKSKKR--VFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENY 112 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 112 (490)
.+..+..+++...-.+.. .+...-+.++....+. +..+..+..+.+.... ...+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHH
Confidence 445555555555433221 1223333355555444 5566666655554221 33467788889999999999
Q ss_pred HhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC
Q 011226 113 FVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD 192 (490)
Q Consensus 113 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 192 (490)
|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.|.+. -|
T Consensus 1072 YkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD 1133 (1630)
T 1xi4_A 1072 FRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD 1133 (1630)
T ss_pred HHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CC
Confidence 999753 2233333433 6789999999988652 3678999999999999999999999653 37
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+. + .++...|..+..
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 7788889999999999999999999888753 33333446899999999888644432 2 356667778999
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
.|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+..+|...|++..
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999885 37889999999999999999999876 266889988999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc--CChHHHH
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--KDVDGAE 430 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~ 430 (490)
|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+-+...+.+. ++..++.
T Consensus 1269 A~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1269 AQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 98877653 2366677789999999999999999998888664 13355666666666654 3455555
Q ss_pred HHHHHHHHcCC----CCCHHhHHHHHHHHHhcCCCcHHHHHHHhhC
Q 011226 431 GFLEILKKAVD----DLGVEVFEPLIRTYAAAGRTSPVMLRRLKME 472 (490)
Q Consensus 431 ~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~ 472 (490)
+.|..-....+ -.+...|.-++..|.+.|++..|+...|...
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 55553322110 0357789999999999999888876665543
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=2.1e-15 Score=127.61 Aligned_cols=209 Identities=17% Similarity=0.076 Sum_probs=112.9
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL 270 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 270 (490)
++...+..+...+...|++++|...|++..+. .|.+...+..+...+.+.|++++|...|++..+..+ .+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 44555556666666666666666666666665 455566666666666666666666666666655432 234455555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCh
Q 011226 271 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL 350 (490)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 350 (490)
..++...+.. ... .....|++++|...++...+..+. +...+..+...+...|++
T Consensus 80 g~~~~~~~~~---------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~ 134 (217)
T 2pl2_A 80 SEAYVALYRQ---------------AED---------RERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGER 134 (217)
T ss_dssp HHHHHHHHHT---------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhh---------------hhh---------hcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCh
Confidence 5555544000 000 001116666666666666655444 455666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 011226 351 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 430 (490)
++|+..|++..+.+ .+...+..+...+...|++++|+..|+++++... .+...+..+...+...|++++|.
T Consensus 135 ~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-------~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 135 DKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP-------KDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHccCHHHHH
Confidence 66666666666654 4566666666666666666666666666666641 23556666666666666666666
Q ss_pred HHHHHH
Q 011226 431 GFLEIL 436 (490)
Q Consensus 431 ~~~~~~ 436 (490)
..+++.
T Consensus 206 ~~~~~~ 211 (217)
T 2pl2_A 206 RAAALE 211 (217)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 666654
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=4.1e-15 Score=125.76 Aligned_cols=199 Identities=13% Similarity=0.044 Sum_probs=133.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHH
Q 011226 155 GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN 234 (490)
Q Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (490)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+. .|.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 4677889999999999999999999999998864 336788888999999999999999999999997 6778889999
Q ss_pred HHHHHHHc-----------CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHH
Q 011226 235 LASIYVEA-----------GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL 303 (490)
Q Consensus 235 l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (490)
+...+... |++++|...|++..+..+ -+...+..+..++...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 99999888 666666666666665432 234555566666666666666666666665554 3455555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 304 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 360 (490)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 360 (490)
.+..++...|++++|...|+...+..+. +...+..+...+...|++++|...|++.
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5666666666666666666665555443 4455555555556666666666555543
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=1.1e-14 Score=137.62 Aligned_cols=344 Identities=15% Similarity=0.087 Sum_probs=237.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH---HHHHHHHhhcCCCCCCHhHHHHHHHHHHHc
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGI---DAAENYFVDLPETSKNHLTYGSLLNCYCKE 136 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 136 (490)
.+...+.+.|++++|++.|+...+.| +...+..+...+...|+. ++|..+|+...+. +...+..|...+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhC
Confidence 35667778999999999999998776 333455566677777888 8999999988874 666777777755555
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC---CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 137 L-----MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP---EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 137 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
+ ++++|++.|++..+.|. ...+..|...|...+.. .++.+.+......| +......+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 78999999999999764 34777888888776553 45666666666655 45566678888888885
Q ss_pred hhHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc----
Q 011226 209 ISGAER----VIEEMKRDGRVAADWTTFSNLASIYVEAG---LFEKAERALKELENRNAHRDLSAYQFLITLYGQT---- 277 (490)
Q Consensus 209 ~~~a~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 277 (490)
++++.. +++.... .++..+..|...|...| +.++|++.|++..+.|. ++...+..+...|...
T Consensus 157 ~~~~~~~a~~~~~~a~~-----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN-----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp GGGGHHHHHHHHHHHTT-----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSS
T ss_pred cccCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCC
Confidence 554444 4444433 23337788999999999 99999999999998775 5666556777777655
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHHHHHHH-H--HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-----C
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYLNMIQV-L--VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG-----R 349 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~ 349 (490)
+++++|+..|+... .+ +...+..+... + ...++.++|...|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999986 32 44566666666 3 46899999999999998876 6677778888787 55 9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh---
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ--- 422 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 422 (490)
+++|...|++.. . -+...+..+...|.. ..++++|..+|++..+.|. + .....|...|..
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-------~--~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-------N--SADFAIAQLFSQGKG 369 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-------T--THHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-------H--HHHHHHHHHHHhCCC
Confidence 999999999887 3 366677777766665 3489999999999999872 3 344556666654
Q ss_pred -cCChHHHHHHHHHHHHcCC
Q 011226 423 -EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 423 -~g~~~~a~~~~~~~~~~~~ 441 (490)
..+.++|..+|+...+.|.
T Consensus 370 ~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 4589999999999999886
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.1e-13 Score=121.82 Aligned_cols=225 Identities=13% Similarity=0.016 Sum_probs=176.9
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHccCCCCHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAY 267 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 267 (490)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566677777888888888888888887742 44567777788888 888888888888887754 56677
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHH
Q 011226 268 QFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNV 339 (490)
Q Consensus 268 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (490)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777778888 888888888888877654 55667777778887 888888888888887765 5566777
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 340 MIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 340 li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ | ..
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~-~~ 219 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--------N-GG 219 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------C-HH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--------C-HH
Confidence 7777877 888899999998888763 55677777888888 889999999999988876 4 66
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 011226 412 TIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 412 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 441 (490)
.+..+...|.. .+++++|...|++..+.++
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77778888888 8899999999999988886
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=5.3e-14 Score=122.16 Aligned_cols=208 Identities=14% Similarity=0.038 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
..+..+...+...|++++|.+.|+++.+... .+...+..+...|...|++++|.+.++++.+..+. +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 4445555555555566666655555554322 24455555555566666666666666655554332 344555566666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011226 310 VNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 388 (490)
...|++++|.+.++.+...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665521122 445666667777777777777777777776532 2456677777777777888888
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
...++++.+.. ..+...+..+...+...|++++|.+.++++.+..| .+....
T Consensus 195 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGG-------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP-GSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSHHHH
T ss_pred HHHHHHHHHhC-------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCHHHH
Confidence 88877777664 14466677777777777888888888887777766 444443
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=7.4e-15 Score=126.79 Aligned_cols=211 Identities=12% Similarity=0.041 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 311 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (490)
|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+..+. +...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHH
Confidence 34444444444555555555544444221 23444444444555555555555555554443321 33444455555555
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.|++++|...++.+.+..+. +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+..
T Consensus 104 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544332 445556666666666666666666666665422 2455666666677777777777777
Q ss_pred HHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 392 LEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
++++.+.. ..+..++..+..++...|++++|...++++.+..| .+..++..+...
T Consensus 182 ~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~l 236 (243)
T 2q7f_A 182 FAAVTEQD-------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP-DHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT-TCHHHHHHHTC-
T ss_pred HHHHHHhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc-chHHHHHHHHHH
Confidence 77776664 13466677777777777777777777777777766 555555554433
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=2.3e-14 Score=126.01 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC--HhhHHHHHHH
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD--SYTYNVWMRA 202 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~ 202 (490)
.+......+...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+.+..|+ ...|..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 444555666677777777777777776542 3444677777777777777777777777766321111 2236667777
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhH
Q 011226 203 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE 282 (490)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 282 (490)
+...|++++|...|++..+. .+.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777775 45566777777777777788888877777776542 2345555555523444457777
Q ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC---hhhHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHhcCChhH
Q 011226 283 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKD---LPGAEKCFKEWESGC-ATYD------IRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~~ 352 (490)
|...|+++.+..+. +...+..+...+...|+ .++|...+++..+.. ..|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 87777777765543 34555566666666666 666777777765432 1112 2456667777778888888
Q ss_pred HHHHHHHHHHc
Q 011226 353 AEELKERARRR 363 (490)
Q Consensus 353 a~~~~~~~~~~ 363 (490)
|...|+++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888775
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=8e-14 Score=118.61 Aligned_cols=210 Identities=11% Similarity=0.015 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 308 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (490)
...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...++++....+. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 44445555555555555555555555554322 23445555555555555555555555555554332 33445555556
Q ss_pred HHhc-CChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011226 309 LVNL-KDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 386 (490)
Q Consensus 309 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 386 (490)
+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666655521111 245556666666677777777777776666432 24556666666777777777
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
+|...++++.+.. ...+...+..+...+...|+.+.|..+++.+.+..| .+....
T Consensus 165 ~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~ 219 (225)
T 2vq2_A 165 DADYYFKKYQSRV------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP-YSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHH
Confidence 7777777776664 002355566666666677777777777777766665 444443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=9.7e-14 Score=118.09 Aligned_cols=204 Identities=12% Similarity=-0.033 Sum_probs=153.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++..... .+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 4456677777888888888888888888776 566677778888888888888888888888776543 3566777788
Q ss_pred HHHHhc-CChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 011226 272 TLYGQT-GNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR 349 (490)
Q Consensus 272 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 349 (490)
..+... |++++|...++.+.+....| +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 888888 88888888888877621122 2456677777888888888888888887776554 56777888888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88888888888775432366667777777788888888888888887765
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=6.7e-14 Score=121.52 Aligned_cols=201 Identities=11% Similarity=-0.012 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.++++.+... .+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 34455555566666666666666666554 344555566666666666666666666666655432 244555556666
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
|...|++++|...++++...+..| +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666655411122 2334555566666666666666666666655433 45566666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|...++.+.+... .+...+..+...+...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777665422 345556666666667777777777777776665
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=7.9e-14 Score=127.59 Aligned_cols=245 Identities=10% Similarity=0.043 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 161 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND-ISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 161 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
|+.+...+...|++++|+..++++++.. +-+...|+.+..++...|+ +++|+..|+++++. .+.+...|..+..++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 4444444445555555555555555432 1134455555555555664 66666666666665 455566666666666
Q ss_pred HHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh-cCChhhH
Q 011226 240 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDLPGA 318 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 318 (490)
...|++++|+..|+++..... -+...|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 666666666666666665433 34556666666666666666666666666665543 44555666666666 4444555
Q ss_pred -----HHHHHHHHhcCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------
Q 011226 319 -----EKCFKEWESGCATYDIRVTNVMIGAYAKEG--RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-------- 383 (490)
Q Consensus 319 -----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------- 383 (490)
...++......+. +...|+.+...+...| ++++|.+.+.++ +. -..+...+..+...|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 4666666666555 6667777777777766 577888888776 33 2234566777777777653
Q ss_pred -CHHHHHHHHHHH-HhcCCCCCCCCcCC-HHHHHHHHHHHH
Q 011226 384 -DMKLAVDCLEKA-IDTGRGDGGKWVPS-SETIRTFMRHFE 421 (490)
Q Consensus 384 -~~~~A~~~~~~~-~~~~~~~~~~~~p~-~~~~~~l~~~~~ 421 (490)
..++|+++++++ .+.. |. ...|..+...+.
T Consensus 332 ~~~~~A~~~~~~l~~~~D--------P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD--------TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC--------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHH
Confidence 258899999998 6665 54 555665555554
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=2.5e-14 Score=123.40 Aligned_cols=200 Identities=17% Similarity=0.080 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 33444555555555566666655555554 344555555555556666666666666655554332 244555555555
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
+...|++++|...++++.+..+. +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666655554432 3444555556666666666666666665554433 455666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 666666665422 245566666666666777777777777666665
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.65 E-value=7.8e-15 Score=129.24 Aligned_cols=245 Identities=12% Similarity=-0.026 Sum_probs=118.7
Q ss_pred CCCCcHHHHHHHHHHCCCC---CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 172 GHPEKIPAIIQEMKASSIM---PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 172 ~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
|++++|+..|+++.+.... .+..++..+..++...|++++|...|+++.+. .+.+..++..+...|...|++++|
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHH
Confidence 3444455555544443110 12334444555555555555555555555554 344455555555555555555555
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG 328 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 328 (490)
...|++...... .+...+..+..+|...|++++|...++++.+..+ +.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 555555554322 2344555555555555555555555555554332 2222222333334445556666655554443
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC
Q 011226 329 CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD--P-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK 405 (490)
Q Consensus 329 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 405 (490)
.+. +...+ .++..+...++.++|...++...+.... | +...+..+...+...|++++|...|+++.+..
T Consensus 174 ~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 245 (275)
T 1xnf_A 174 SDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN------ 245 (275)
T ss_dssp SCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------
T ss_pred CCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------
Confidence 222 22222 2444455555555566655555432110 0 13455566666666677777777776666654
Q ss_pred CcCCHHHHHHHHHHHHhcCChHHHHHHH
Q 011226 406 WVPSSETIRTFMRHFEQEKDVDGAEGFL 433 (490)
Q Consensus 406 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 433 (490)
|+. +.....++...|++++|.+.+
T Consensus 246 --p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CTT--CHHHHHHHHHHHHHHHC----
T ss_pred --chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 321 112233455556666665554
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=1.3e-12 Score=114.85 Aligned_cols=234 Identities=14% Similarity=0.023 Sum_probs=197.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCCCchh
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANIS 301 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (490)
+-+..++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 346778888999999999999999999999883 356778889999999 999999999999998865 5678
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHH
Q 011226 302 YLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWE 373 (490)
Q Consensus 302 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~ 373 (490)
+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999998874 67888899999999 999999999999999865 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCH
Q 011226 374 IFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGV 445 (490)
Q Consensus 374 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 445 (490)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.++ .
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~ 218 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---G 218 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---H
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---H
Confidence 88888887 899999999999999875 45778888999999 9999999999999999865 7
Q ss_pred HhHHHHHHHHHh----cCCCcHHHHHHHhhCCCCCCHHHHHH
Q 011226 446 EVFEPLIRTYAA----AGRTSPVMLRRLKMEKVEVSEASKKL 483 (490)
Q Consensus 446 ~~~~~l~~~~~~----~g~~~~~~~~~m~~~~~~p~~~~~~~ 483 (490)
..+..+...|.. .++..+++....+.....|+.....+
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788889999998 88876666555555555566554443
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1e-13 Score=121.98 Aligned_cols=244 Identities=13% Similarity=0.065 Sum_probs=193.6
Q ss_pred HHcCChhHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChh
Q 011226 204 AAVNDISGAERVIEEMKRDGRV--AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS 281 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 281 (490)
...|++++|+..++++.+.... +.+..++..+...+...|++++|...|+++.+... .+...+..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 3457899999999999986311 23567788999999999999999999999988654 46889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 282 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
+|...|+++.+..+. +...+..+...+...|++++|...++.+.+..+. .......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999987653 5678889999999999999999999999886544 3333444455677799999999998888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011226 362 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-----SETIRTFMRHFEQEKDVDGAEGFLEIL 436 (490)
Q Consensus 362 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 436 (490)
... .++...+ .++..+...++.++|+..+.+..+.. |+ ...+..+...+...|++++|...|+++
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDN--------TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSH--------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccc--------ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 753 3344444 46777888889999999999988765 32 578899999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCCcHHH
Q 011226 437 KKAVDDLGVEVFEPLIRTYAAAGRTSPVM 465 (490)
Q Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 465 (490)
.+..| .+...+ ..++...|+..+++
T Consensus 242 l~~~p-~~~~~~---~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 242 VANNV-HNFVEH---RYALLELSLLGQDQ 266 (275)
T ss_dssp HTTCC-TTCHHH---HHHHHHHHHHHHC-
T ss_pred HhCCc-hhHHHH---HHHHHHHHHHHhhH
Confidence 99886 454333 44555556544433
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.62 E-value=1.1e-11 Score=121.08 Aligned_cols=429 Identities=10% Similarity=0.040 Sum_probs=276.7
Q ss_pred HHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC---HHHHHHHHhhc
Q 011226 40 RQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG---IDAAENYFVDL 116 (490)
Q Consensus 40 ~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~ 116 (490)
...++.-+. ..+.+...|..++..+.+.+.++.+..+|+.+...- +.....|...+..-.+.|+ ++.+.++|++.
T Consensus 52 i~~lE~~l~-~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 52 IGKLNDMIE-EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 333444443 345799999999999999999999999999998774 5567778888888888888 99999999999
Q ss_pred CCCC---CCHhHHHHHHHHHHHcCCH--------HHHHHHHHHHHh-CCC-CCC-cchHHHHHHHHHh---------cCC
Q 011226 117 PETS---KNHLTYGSLLNCYCKELMT--------EKAEALLEKMKE-LNL-GFS-SMPFNSLMTLYAK---------TGH 173 (490)
Q Consensus 117 ~~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~~~ 173 (490)
.... |++..|..-+....+.++. +...++|+..+. .|. .++ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8844 8998998888776665554 334577877654 354 443 4677777765442 334
Q ss_pred CCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHH-------------cCChhHHHHHHHHHHHC--C--C-CC---------
Q 011226 174 PEKIPAIIQEMKASSIMPDSYTYNVWMRALAA-------------VNDISGAERVIEEMKRD--G--R-VA--------- 226 (490)
Q Consensus 174 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~--~-~~--------- 226 (490)
.+.+..+|+.........-..+|......--. ..+++.|...+.++... + . .+
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 56788888888753211112333222111111 11233344444443221 0 0 01
Q ss_pred --C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHH-HHHH
Q 011226 227 --A-----D---WTTFSNLASIYVEAG-------LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY-RIWR 288 (490)
Q Consensus 227 --~-----~---~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~ 288 (490)
| + ...|...+..--..+ ..+++..+|++..... +-....|...+..+...|+.++|. .+|+
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~ 368 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK 368 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 0 133444444322222 1345667788877753 346777888888888888888886 8888
Q ss_pred HHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---------CC------------ChhhHHHHHHHHHhc
Q 011226 289 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA---------TY------------DIRVTNVMIGAYAKE 347 (490)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~li~~~~~~ 347 (490)
......+ .+...+...+......|+++.|..+|+.+..... .| ...+|...+....+.
T Consensus 369 rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 369 LGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 8876543 3444566677777888889999988888765310 12 234677888888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh
Q 011226 348 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN-GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 426 (490)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 426 (490)
|+.+.|..+|.++.+.-..+....|...+..-.+. ++.+.|..+|+..++.. .-+...|...+......|+.
T Consensus 448 ~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-------p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-------ATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-------CCchHHHHHHHHHHHhCCCH
Confidence 88899999998888751112233443333333343 45888999999888874 23566777888888888899
Q ss_pred HHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCC--CcHHHHHHHhhCCCCCCHHHH
Q 011226 427 DGAEGFLEILKKAVDD--LGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASK 481 (490)
Q Consensus 427 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~ 481 (490)
+.|..+|++++...+. .....|..++..-.+.|+ .+..+..++... .|+....
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~ 577 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKL 577 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHH
Confidence 9999999988887652 245788888888888888 445566665544 3444433
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=4.1e-14 Score=132.20 Aligned_cols=159 Identities=14% Similarity=0.055 Sum_probs=111.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-YD----IRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AK 370 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~ 370 (490)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+.... ++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 4556666777777777777777765432111 11 236777788888889999998888887752111 12 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCCH
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD-----DLGV 445 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~ 445 (490)
++..+...+...|++++|...+++..+.....+ .......++..+...|...|++++|...++++.+... ....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 677788889999999999999999887631000 0001156788889999999999999999999877421 1346
Q ss_pred HhHHHHHHHHHhcCC
Q 011226 446 EVFEPLIRTYAAAGR 460 (490)
Q Consensus 446 ~~~~~l~~~~~~~g~ 460 (490)
.++..+...+...|+
T Consensus 348 ~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 348 TARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhH
Confidence 788889999988887
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=2.9e-14 Score=133.25 Aligned_cols=305 Identities=13% Similarity=0.021 Sum_probs=197.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----cchHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-C
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS----SMPFNSLMTLYAKTGHPEKIPAIIQEMKAS----SIMP-D 192 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 192 (490)
....+......+...|++++|...|++..+.+. .+ ..+|..+...+...|++++|...+++..+. +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455556666666777777777776666532 11 245566666666777777777776665432 1111 1
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGL--------------------FEKA 248 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A 248 (490)
..++..+..++...|++++|...+++..+......+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 345666777777788888888777776653101111 3466777777888888 8888
Q ss_pred HHHHHHHHHcc--C--C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhH
Q 011226 249 ERALKELENRN--A--H-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGA 318 (490)
Q Consensus 249 ~~~~~~~~~~~--~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a 318 (490)
...+++..... . . ....++..+...|...|++++|...+++....... ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88877664421 1 1 11346777778888888888888888877654221 11 12667788888889999999
Q ss_pred HHHHHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011226 319 EKCFKEWESGCAT-YD----IRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMKLA 388 (490)
Q Consensus 319 ~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A 388 (490)
...++........ .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9988886542211 01 45777888899999999999999998875311 112 45677788889999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHH
Q 011226 389 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG 428 (490)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 428 (490)
...+++..+..... +.......++..+...+...|+...
T Consensus 327 ~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREV-GDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99999987662100 0001125567777778877776643
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=4.5e-11 Score=116.74 Aligned_cols=390 Identities=10% Similarity=0.004 Sum_probs=272.2
Q ss_pred chHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCC---HHHHHHHH
Q 011226 71 YYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELM---TEKAEALL 146 (490)
Q Consensus 71 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~---~~~a~~~~ 146 (490)
..+.+..|+..+..+ +-|...|..++..+.+.+.++.+..+|+.+.. .+.+...|...+..-.+.++ ++.+.++|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 455566677776666 46899999999999999999999999999988 66678889999999888899 99999999
Q ss_pred HHHHhCC-CCCCcchHHHHHHHHHhcCCC--------CcHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHH---------H
Q 011226 147 EKMKELN-LGFSSMPFNSLMTLYAKTGHP--------EKIPAIIQEMKA-SSI-MPD-SYTYNVWMRALA---------A 205 (490)
Q Consensus 147 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~p~-~~~~~~l~~~~~---------~ 205 (490)
++.+... ..|++..|...+....+.++. +.+.++|+.... .|. .|+ ...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998864 247888898888877666654 224477777654 366 554 467777766543 2
Q ss_pred cCChhHHHHHHHHHHHCCCCCCCHHHHH---HHHHHH----------HHcCCHHHHHHHHHHHHHc--cCC---------
Q 011226 206 VNDISGAERVIEEMKRDGRVAADWTTFS---NLASIY----------VEAGLFEKAERALKELENR--NAH--------- 261 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~----------~~~~~~~~A~~~~~~~~~~--~~~--------- 261 (490)
.++++.+..+|+.++... ...-..+|. .+...+ -...+++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HhHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 345788999999998632 111223332 222211 0112344455555554321 111
Q ss_pred ------C--C------HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHH-
Q 011226 262 ------R--D------LSAYQFLITLYGQTG-------NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE- 319 (490)
Q Consensus 262 ------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~- 319 (490)
| + ...|...+..--..+ ..+.+..+|++.....+. ....|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 0 134555554333222 123456789988877554 5677888888888899999996
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHH
Q 011226 320 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA---------DPN------------AKTWEIFSDY 378 (490)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~~~ 378 (490)
.+|+......+. +...|...+...-+.|+++.|..+|+.+.+... .|+ ...|...+..
T Consensus 365 ~il~rAi~~~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCIPN-SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999876553 677788888889999999999999999986410 142 2468888888
Q ss_pred HHhcCCHHHHHHHHHHHHhc-CCCCCCCCcCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 379 YLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFEQE-KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
..+.|..+.|..+|.++++. +. +....|...+..-.+. ++.+.|..+|+..++.-+ .+...|..+++...
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~-------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKL-------VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGG-------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 88899999999999999987 31 3344554444444444 459999999999999866 78888899999888
Q ss_pred hcCC--CcHHHHHHHhhC
Q 011226 457 AAGR--TSPVMLRRLKME 472 (490)
Q Consensus 457 ~~g~--~~~~~~~~m~~~ 472 (490)
..|+ .+.++++.-...
T Consensus 516 ~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHTCHHHHHHHHHHHTTT
T ss_pred hCCCHHHHHHHHHHHHHh
Confidence 8888 566777765544
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.57 E-value=6.1e-14 Score=131.37 Aligned_cols=282 Identities=12% Similarity=0.057 Sum_probs=159.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHH
Q 011226 126 YGSLLNCYCKELMTEKAEALLEKMKELNLGFSS-----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 200 (490)
Q Consensus 126 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 200 (490)
+..+...+...|++++|+..|++..+.+ |+. ..|..+...+...|++++|...+++..+..
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------ 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------
Confidence 3344455566666666666666665543 221 234445555555555555555555554320
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHH
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-----AHRDLSAYQFLITLYG 275 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~ 275 (490)
...+..+....++..+...|...|++++|...+++..... ......++..+...|.
T Consensus 117 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 117 -------------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0000011122334444444455555555555444443310 0011234444555555
Q ss_pred hcCC-----------------hhHHHHHHHHHHHh----CCC-CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-C
Q 011226 276 QTGN-----------------LSEVYRIWRSLRLA----FPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-Y 332 (490)
Q Consensus 276 ~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 332 (490)
..|+ +++|...+++.... +.. .....+..+...+...|++++|...+++..+.... .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 55555555544321 100 01234556666777777777777777765442111 0
Q ss_pred C----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011226 333 D----IRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG 403 (490)
Q Consensus 333 ~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 403 (490)
+ ..++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++.++.....
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~- 336 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL- 336 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-
Confidence 1 236677888888889999998888887753111 11 3567778888999999999999999888763100
Q ss_pred CCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 404 GKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 404 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
........++..+...|...|++++|...++++.+...
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 00001245778889999999999999999999988654
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=4e-12 Score=113.77 Aligned_cols=222 Identities=11% Similarity=0.026 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVE-------AGLF-------EKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
++|..+|+++... .+.+...|..++..+.. .|++ ++|..+|++....-.+-+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5777788888876 67777777777777653 4775 788888888876312234567888888888
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCch-hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH-hcCChhHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA-KEGRLENA 353 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a 353 (490)
+.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|+...+..+. +...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888774332 222 6777888888888888888888888876543 4455544333322 26899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcCChHHHHH
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 431 (490)
..+|++..+... -+...|..++..+.+.|++++|..+|++++.... +.| ....|..++..+.+.|+.+.|..
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998887532 2667788888888888999999999999988631 124 46788888888888999999999
Q ss_pred HHHHHHHcCC
Q 011226 432 FLEILKKAVD 441 (490)
Q Consensus 432 ~~~~~~~~~~ 441 (490)
+++++.+..|
T Consensus 263 ~~~~a~~~~p 272 (308)
T 2ond_A 263 VEKRRFTAFR 272 (308)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcc
Confidence 9999988876
No 62
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=3.7e-13 Score=127.08 Aligned_cols=369 Identities=12% Similarity=0.040 Sum_probs=238.5
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCc---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC-----CH
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLY---YPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQ-----GI 106 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 106 (490)
+...+...+....+.|.. ..+..+...|...|+. ++|++.|+...+. +...+..+...+...| ++
T Consensus 18 ~~~~A~~~~~~aa~~g~~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELGYS---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHTCC---TGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 344455555555555543 3333444445556777 8999999998754 4445566666454444 78
Q ss_pred HHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHH
Q 011226 107 DAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEK---AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQE 183 (490)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 183 (490)
++|..+|+..... -+...+..|...|...+..+. +.+.+......| +...+..|...|...+.++++......
T Consensus 91 ~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 91 HEAESLLKKAFAN-GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHT-TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 8999999887762 233377778888877665444 455555555544 456778888888888877776666444
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 011226 184 MKASSIMPDSYTYNVWMRALAAVN---DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA----GLFEKAERALKELE 256 (490)
Q Consensus 184 ~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~ 256 (490)
+.+.-...++..+..|...|...| +.++|+..|++..+.| +++...+..+...|... +++++|.+.|++..
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 433322334457888999999999 9999999999999985 66666666778877665 79999999999987
Q ss_pred HccCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC-----ChhhHHHHHHHHHhc
Q 011226 257 NRNAHRDLSAYQFLITL-Y--GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-----DLPGAEKCFKEWESG 328 (490)
Q Consensus 257 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~ 328 (490)
.| +...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| +.++|...|+... .
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 45566667666 4 56899999999999988766 4566777777776 55 9999999999877 3
Q ss_pred CCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 011226 329 CATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGR 400 (490)
Q Consensus 329 ~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 400 (490)
-+...+..|...|.. ..++++|...|+...+.|. ......+...|.. ..+..+|..+|+...+.|.
T Consensus 316 ---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 ---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp ---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred ---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 366777788877776 3489999999999998763 3445555556653 4589999999999999982
Q ss_pred CCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 401 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 401 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
++.......+......++..+|..+.++..+
T Consensus 390 -------~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 390 -------PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp -------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3333332333333344466677777776655
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=3.4e-14 Score=133.09 Aligned_cols=281 Identities=14% Similarity=0.024 Sum_probs=156.3
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhhCCHHHHHHHHhhcCCC-------CCC
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTV----SDQAIHLDLVAKVQGIDAAENYFVDLPET-------SKN 122 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~ 122 (490)
....+..+...+...|++++|+..|+.+.+.+. .+. ..+..+..++...|++++|...+++.... +..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 344455566677888888888888888877642 222 35667777777888888888877766541 112
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCcchHHHHHHHHHhcCC----------CCcHHHHHHHHHHC
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELN-----LGFSSMPFNSLMTLYAKTGH----------PEKIPAIIQEMKAS 187 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~ 187 (490)
..++..+...|...|++++|...+++..+.. .+....++..+...|...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------- 198 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------- 198 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------
Confidence 3456666777777777777777777665431 00112234444444444444 0000000
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-C
Q 011226 188 SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R 262 (490)
Q Consensus 188 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 262 (490)
+++|...+++..+. +..+....++..+...|...|++++|...+++..+.... +
T Consensus 199 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 199 ---------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 44444444443221 101112234555555566666666666665555432110 1
Q ss_pred C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-----CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC---
Q 011226 263 D----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-----ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA--- 330 (490)
Q Consensus 263 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 330 (490)
+ ...+..+..+|...|++++|...+++........ ...++..+...+...|++++|...+++......
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 1245556666666666666666666554332110 123455666666677777777776666543211
Q ss_pred --CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011226 331 --TYDIRVTNVMIGAYAKEGRLENAEELKERARRR 363 (490)
Q Consensus 331 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 363 (490)
.....++..+...|...|++++|...+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111345666777777888888888888877764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=1.5e-12 Score=106.89 Aligned_cols=169 Identities=14% Similarity=0.093 Sum_probs=100.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 011226 263 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG 342 (490)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 342 (490)
+...|..+...|...|++++|++.|++..+..+. +...+..+..++...|++++|...+.......+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 3445555555555566666666666655554432 3445555555566666666666666655554443 4455555556
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh
Q 011226 343 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ 422 (490)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 422 (490)
.+...++++.|...+.+..+... .+...+..+...+.+.|++++|++.|++.++... .+...|..+..+|.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-------GFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-------hhhhHHHHHHHHHHH
Confidence 66666666666666666665422 2445556666666666666666666666666641 235666666666666
Q ss_pred cCChHHHHHHHHHHHHcCC
Q 011226 423 EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~~~~~ 441 (490)
.|++++|...|+++++..|
T Consensus 154 ~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHhCCc
Confidence 7777777777776666554
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=9.6e-13 Score=121.91 Aligned_cols=299 Identities=11% Similarity=0.063 Sum_probs=204.0
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CC--CCCcchHHHHHHHH--HhcCCCCcHH-----------HHHHHHHHCCCCCCH--
Q 011226 133 YCKELMTEKAEALLEKMKEL--NL--GFSSMPFNSLMTLY--AKTGHPEKIP-----------AIIQEMKASSIMPDS-- 193 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~p~~-- 193 (490)
+.+.+++++|..+++++.+. .+ .++...|-.++..- ...++.+.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 35678888888888777553 11 12233333333221 1122223333 666666442111110
Q ss_pred --hhHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-C----
Q 011226 194 --YTYNVWMRALAAVNDISGAERVIEEMKRDGR---VAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R---- 262 (490)
Q Consensus 194 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~---- 262 (490)
..+......+...|++++|...+++..+.-. .++ ...++..+...|...|++++|...+++..+.... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1122255677889999999999999987411 112 3467888999999999999999999987653211 1
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC-----chhHHHHHHHHHhcCChhhHHHHHHHHHh-----cCCC
Q 011226 263 -DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA-----NISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCAT 331 (490)
Q Consensus 263 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~ 331 (490)
...+++.+..+|...|++++|...+++..+.....+ ..++..+...|...|++++|...+++..+ ....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 135778888999999999999999998875422111 13677889999999999999999999766 3313
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCC
Q 011226 332 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN---AKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGG 404 (490)
Q Consensus 332 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 404 (490)
....++..+...|...|++++|...+++..+... ..+ ...+..+...+...|+ +++|+.++++....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~------ 335 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY------ 335 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH------
Confidence 3466788899999999999999999999875310 012 2235667777888888 77788887765211
Q ss_pred CCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 405 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 405 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
......+..+...|...|++++|...++++.+.
T Consensus 336 --~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 --ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 133567788999999999999999999998874
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.1e-13 Score=125.65 Aligned_cols=272 Identities=13% Similarity=0.064 Sum_probs=181.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----cchHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-CHhh
Q 011226 126 YGSLLNCYCKELMTEKAEALLEKMKELNLGFS-----SMPFNSLMTLYAKTGHPEKIPAIIQEMKAS----SIMP-DSYT 195 (490)
Q Consensus 126 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~ 195 (490)
+......+...|++++|...|++..+.. |+ ...+..+...+...|++++|.+.+++..+. +..| ....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3344555666777777777777766653 22 245566666777777777777777665432 1111 2345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGL--------------------FEKAERA 251 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 251 (490)
+..+..++...|++++|...+++..+.....++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 666777788888888888888776653101112 3366777788888888 8888888
Q ss_pred HHHHHHc----cCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhHHHH
Q 011226 252 LKELENR----NAH-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKC 321 (490)
Q Consensus 252 ~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 321 (490)
+++.... +.. .....+..+...+...|++++|...+++....... ++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776432 111 11346677778888889999998888877643211 11 22667778888889999999988
Q ss_pred HHHHHhcCCC-CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHH
Q 011226 322 FKEWESGCAT-YD----IRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 322 ~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
++........ .+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8886542211 01 456777888899999999999999888753110 11 34667788889999999999999
Q ss_pred HHHHHhcC
Q 011226 392 LEKAIDTG 399 (490)
Q Consensus 392 ~~~~~~~~ 399 (490)
++++.+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988764
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=3.1e-12 Score=105.07 Aligned_cols=165 Identities=16% Similarity=0.094 Sum_probs=75.9
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
+..|..+..++...|++++|+..|++..+. .|.+..++..+..+|.+.|++++|...++....... .+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 344455555555555555555555555554 344444555555555555555555555555444322 23334444444
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
.+...++++.|...+.......+. +...+..+...+...|++++|.+.|++..+..+. +..+|..+..+|...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 444445555555544444443322 2333344444444444444444444444443332 33444444444444444444
Q ss_pred HHHHHHHHHH
Q 011226 353 AEELKERARR 362 (490)
Q Consensus 353 a~~~~~~~~~ 362 (490)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=2.5e-13 Score=123.25 Aligned_cols=280 Identities=14% Similarity=0.062 Sum_probs=200.5
Q ss_pred hHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHH
Q 011226 160 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD----SYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTT 231 (490)
Q Consensus 160 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 231 (490)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++..+. +..+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445566788899999999999999886322 3 356778888999999999999999887653 211223556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGN--------------------LSEVYRI 286 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 286 (490)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788889999999999999999887653211 22 3467778888889999 8899888
Q ss_pred HHHHHHh----CCCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcCChhHHHHH
Q 011226 287 WRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----YDIRVTNVMIGAYAKEGRLENAEEL 356 (490)
Q Consensus 287 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 356 (490)
+++.... +..+ ....+..+...+...|++++|...++...+.... ....++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8876542 1111 1235677788888999999999999887543111 1123677888889999999999999
Q ss_pred HHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHH
Q 011226 357 KERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 357 ~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 431 (490)
+++..+.... ++ ..++..+...+...|++++|...++++.+..... ........++..+...+...|++++|..
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9888753111 12 4466777888899999999999999887653100 0000114577788889999999999999
Q ss_pred HHHHHHHcCC
Q 011226 432 FLEILKKAVD 441 (490)
Q Consensus 432 ~~~~~~~~~~ 441 (490)
.++++.+...
T Consensus 325 ~~~~a~~~~~ 334 (338)
T 3ro2_A 325 FAEKHLEISR 334 (338)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=8e-12 Score=111.81 Aligned_cols=218 Identities=13% Similarity=0.066 Sum_probs=143.6
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------HcCCh-------hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALA-------AVNDI-------SGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
+|..+|++..+.. +-++..|..++..+. ..|++ ++|..+|++..+.- .+.+...|..++..+.+
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHh
Confidence 4455555555432 224445555544443 34664 77777777777731 34455677777777777
Q ss_pred cCCHHHHHHHHHHHHHccCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHH-HhcCChhhH
Q 011226 242 AGLFEKAERALKELENRNAHRD-LS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL-VNLKDLPGA 318 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a 318 (490)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+..+. +...|....... ...|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 77788888777777763 232 32 6777777777778888888888777765432 333333322222 126888888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011226 319 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-ADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKA 395 (490)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 395 (490)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887766554 67777888888888888888888888888752 343 3456777777777888888888888888
Q ss_pred HhcC
Q 011226 396 IDTG 399 (490)
Q Consensus 396 ~~~~ 399 (490)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8776
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=8.7e-12 Score=115.20 Aligned_cols=311 Identities=12% Similarity=0.034 Sum_probs=212.5
Q ss_pred CCCHhHHHHHHHHH--HHcCCHHHHHHHHHHHHhCC--CC--CCcchHHHHHHH--HHhcCCCCcHH---------HHHH
Q 011226 120 SKNHLTYGSLLNCY--CKELMTEKAEALLEKMKELN--LG--FSSMPFNSLMTL--YAKTGHPEKIP---------AIIQ 182 (490)
Q Consensus 120 ~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 182 (490)
.|+..+-+.|-..| ...+++++|.++++++.+.. ++ ++...|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555565555 77888999988888875531 11 223333444432 11223444444 7777
Q ss_pred HHHHCCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 183 EMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA----DWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 183 ~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
.+.....+.+. ..+......+...|++++|...|++..+.....+ ...++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 66543211111 1223344567789999999999999987521112 245678899999999999999999998
Q ss_pred HHHccCC-C-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-C----CchhHHHHHHHHHhcCChhhHHHHHH
Q 011226 255 LENRNAH-R-----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-T----ANISYLNMIQVLVNLKDLPGAEKCFK 323 (490)
Q Consensus 255 ~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (490)
..+.... + ...+++.+..+|...|++++|.+.+++..+.... + ...++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7653211 1 2456778889999999999999999987653211 1 12367778899999999999999999
Q ss_pred HHHh-----cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CC-HHHHHHHHHHHHhcCC---HHHHHHH
Q 011226 324 EWES-----GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD---PN-AKTWEIFSDYYLRNGD---MKLAVDC 391 (490)
Q Consensus 324 ~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~---~~~A~~~ 391 (490)
+... ..+. ...++..+...+.+.|++++|...+++..+.... |. ...+..+...+...++ +.+|+..
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9876 4444 3678888999999999999999999999874221 22 2345555556677777 7788888
Q ss_pred HHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 392 LEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
+++. +. .......+..+...|...|++++|...|+++.+.
T Consensus 326 ~~~~---~~-----~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKK---NL-----HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHT---TC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC---CC-----hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7762 21 1123556778899999999999999999998763
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=8.4e-13 Score=122.32 Aligned_cols=227 Identities=8% Similarity=-0.047 Sum_probs=110.5
Q ss_pred HhccCCchHHHHHHHHHHhC--CCCCCh--hhHHHHHHHH--HhhCCHHHHH-----------HHHhhcCCCCCCHhH--
Q 011226 65 LRDRKLYYPALKLSENMEKR--GMNKTV--SDQAIHLDLV--AKVQGIDAAE-----------NYFVDLPETSKNHLT-- 125 (490)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~~--~~~g~~~~a~-----------~~~~~~~~~~~~~~~-- 125 (490)
+.+.+++++|..+++++.+. ..+.+. ..|..++..- .-.+.++.+. +.++.+...+.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998443 222233 2333333221 1223333333 444444321111111
Q ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC-C----
Q 011226 126 ----YGSLLNCYCKELMTEKAEALLEKMKEL----NLGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM-P---- 191 (490)
Q Consensus 126 ----~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p---- 191 (490)
+......+...|++++|.+.|++..+. +-.+ ...+|..+...|...|++++|...+.+..+.... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112444556677777777777776653 1001 2245555666666666666666666655432100 0
Q ss_pred -CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----cC-C
Q 011226 192 -DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA----DWTTFSNLASIYVEAGLFEKAERALKELENR----NA-H 261 (490)
Q Consensus 192 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~ 261 (490)
...+++.+..+|...|++++|...+++..+...... ...++..+..+|...|++++|.+.+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 123445555556666666666666555544210001 1124455555555555555555555555441 11 1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 262 RDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 262 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
....++..+..+|...|++++|...+++..
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 123344455555555555555555555443
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=9.4e-13 Score=125.10 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF-EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 287 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (490)
++++...++..... .+.+...+..+...+...|++ ++|.+.|++..+... .+...|..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555555555543 445666666666666667777 777777766665432 24566666666777777777777777
Q ss_pred HHHHHhCCCCCchhHHHHHHHHHhc---------CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------CCh
Q 011226 288 RSLRLAFPNTANISYLNMIQVLVNL---------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE--------GRL 350 (490)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~ 350 (490)
++..+.. |+...+..+...+... |++++|...+++..+..+. +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 7666543 3345566666666666 7777777777777766554 566777777777777 778
Q ss_pred hHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHH
Q 011226 351 ENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG 428 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 428 (490)
++|...|++..+.... -+...|..+...|...|++++|++.|+++.+... .+...+..+..++...|++++
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-------AWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888775320 2667777888888888888888888888887761 336677777778888888887
Q ss_pred HHHHHHH
Q 011226 429 AEGFLEI 435 (490)
Q Consensus 429 a~~~~~~ 435 (490)
|.+.+.+
T Consensus 311 Ai~~~~~ 317 (474)
T 4abn_A 311 LLESKGK 317 (474)
T ss_dssp HHHHTTT
T ss_pred HHHHhcc
Confidence 7765543
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.6e-12 Score=123.53 Aligned_cols=208 Identities=12% Similarity=0.052 Sum_probs=181.7
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 011226 244 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL-SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (490)
.++++...++...... +.+...+..+..++...|++ ++|+..|++..+..+. +...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567777777765532 24678899999999999999 9999999999987654 5678899999999999999999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCH
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKE---------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN--------GDM 385 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~ 385 (490)
+...+.. |+...+..+...|... |++++|...|++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999875 4568889999999999 9999999999999986433 678888999999888 999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVP----SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
++|+..|+++++.. | +...|..+..+|...|++++|...|+++.+..| .+..++..+..++...|+.
T Consensus 238 ~~A~~~~~~al~~~--------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 238 QQALSAYAQAEKVD--------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp HHHHHHHHHHHHHC--------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence 99999999999986 6 689999999999999999999999999999998 8899999999999998886
Q ss_pred cHHH
Q 011226 462 SPVM 465 (490)
Q Consensus 462 ~~~~ 465 (490)
.+++
T Consensus 309 ~eAi 312 (474)
T 4abn_A 309 TSLL 312 (474)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=123.51 Aligned_cols=241 Identities=14% Similarity=0.104 Sum_probs=145.2
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------c
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRD-------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR------N 259 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 259 (490)
..++..+...+...|++++|..+++++.+. . .+....++..+...|...|++++|...+++.... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345666666777777777777777776652 1 3344555667777777777777777777776543 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC------CCC-CchhHHHHHHHHHhcCChhhHHHHHHHHHhc---
Q 011226 260 A-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF------PNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG--- 328 (490)
Q Consensus 260 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 328 (490)
. .....++..+...|...|++++|...++++.+.. ..| ....+..+...+...|++++|...++...+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 1224556667777777777777777777665431 111 2334566777777888888888887776543
Q ss_pred ---CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 011226 329 ---CATY-DIRVTNVMIGAYAKEGRLENAEELKERARRR-------GADPNAK-------TWEIFSDYYLRNGDMKLAVD 390 (490)
Q Consensus 329 ---~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~l~~~~~~~g~~~~A~~ 390 (490)
+..| ...++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1111 3346677788888888888888888887752 1111111 11222233344555666666
Q ss_pred HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 391 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+....... .....++..+..+|.+.|++++|...++++++..+
T Consensus 266 ~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 266 WYKACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHhhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 777666553 13467788899999999999999999999887654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=123.12 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=119.4
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC------C
Q 011226 122 NHLTYGSLLNCYCKELMTEKAEALLEKMKEL-------NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------S 188 (490)
Q Consensus 122 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 188 (490)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777788888888888888888877663 22234556677777788888888888888777653 1
Q ss_pred C-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 011226 189 I-MPDSYTYNVWMRALAAVNDISGAERVIEEMKRD------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR--- 258 (490)
Q Consensus 189 ~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 258 (490)
- .....++..+..++...|++++|...++++.+. +..+.....+..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223456677777888888888888888887764 212334456777888888888888888888887653
Q ss_pred ---cCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 259 ---NAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 259 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
+..| ...++..+..+|...|++++|...++++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234667777788888888888888887765
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=1.9e-11 Score=104.17 Aligned_cols=210 Identities=12% Similarity=0.002 Sum_probs=148.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHH
Q 011226 226 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM 305 (490)
Q Consensus 226 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 305 (490)
+.++..+......+...|++++|...|++..+....++...+..+..++...|++++|+..+++..+..+. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34567788888888888899999998888887665466777777888888888888888888888876543 45667778
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATYDI-------RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK---TWEIF 375 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l 375 (490)
...+...|++++|...++...+..+. +. ..|..+...+...|++++|...|++..+. .|+.. .|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 88888888888888888888776554 44 44677777778888888888888888764 34322 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
...|. ..+...++++...+. .+...+.... ....+.+++|...++++.+..| .+..+...+...
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~-------~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLAS-------SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQDQV 223 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTT-------TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHhccc-------CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence 34443 334455666666541 3344444433 3345668999999999999998 777777666544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.2e-10 Score=107.44 Aligned_cols=271 Identities=13% Similarity=0.001 Sum_probs=175.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCcc----hHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-CCCH----hhHHHH
Q 011226 129 LLNCYCKELMTEKAEALLEKMKELNLGFSSM----PFNSLMTLYAKTGHPEKIPAIIQEMKASSI-MPDS----YTYNVW 199 (490)
Q Consensus 129 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l 199 (490)
....+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... .++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556777788877777766643211111 345555667777888888777777654210 0111 234556
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCC---CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC----CHHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKRDG---RVA--A-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHR----DLSAYQF 269 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~ 269 (490)
...+...|++++|...+++..+.. ..+ | ....+..+...+...|++++|...+++........ ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 677888888888888888776531 011 2 23456667788888888888888888876643221 2345667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCc-hhHH-----HHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHH
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTAN-ISYL-----NMIQVLVNLKDLPGAEKCFKEWESGCATYD---IRVTNVM 340 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 340 (490)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........++ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 778888889999999888887654322221 1121 223446788999999988888765433211 2245677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 341 IGAYAKEGRLENAEELKERARRR----GADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++.....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 78888999999999999887642 211122 255566677888999999999999887663
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=1.2e-10 Score=107.43 Aligned_cols=277 Identities=12% Similarity=0.038 Sum_probs=196.6
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHh----hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC----HHHHH
Q 011226 162 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY----TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFS 233 (490)
Q Consensus 162 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 233 (490)
......+...|++++|...+++........+.. .++.+...+...|++++|...+++.........+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344456677999999999999988754222222 4566777888999999999999988763201122 23356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcc----CC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCC----chhH
Q 011226 234 NLASIYVEAGLFEKAERALKELENRN----AH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA----NISY 302 (490)
Q Consensus 234 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 302 (490)
.+...+...|++++|...+++..... .. | ....+..+...+...|++++|...+++......... ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 78888999999999999999876532 11 2 234566688889999999999999999876543221 2356
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-hhHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDI-RVTN-----VMIGAYAKEGRLENAEELKERARRRGADPN---AKTWE 373 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~ 373 (490)
..+...+...|++++|...++........++. ..+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888899999999999999987653222111 1222 233447789999999999998876432211 22456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
.+...+...|++++|...+++........ ...++. ..+..+..++...|+.++|...+++.....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC--cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 77788999999999999999887653100 011222 366777888999999999999999987643
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=1.1e-11 Score=114.41 Aligned_cols=227 Identities=8% Similarity=-0.030 Sum_probs=117.0
Q ss_pred HHhcCCCCcHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-----CHHHHHHHHH
Q 011226 168 YAKTGHPEKIPAIIQEMKASSI-MPD----SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTFSNLAS 237 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~ 237 (490)
+...|++++|...|++..+... .++ ..++..+..++...|+++.|...+++..+.....+ ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555555443210 011 23445555566666666666666655544210001 1334555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCCCchhHHHHHH
Q 011226 238 IYVEAGLFEKAERALKELENRNAH-R----DLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISYLNMIQ 307 (490)
Q Consensus 238 ~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~ 307 (490)
.|...|++++|.+.|++..+.... + ...++..+..+|...|++++|...+++... ..+. ...++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Confidence 666666666666666655442100 1 123455566666666666666666666554 2222 2345556666
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCAT----YDIRVTNVMIGAYAKEGR---LENAEELKERARRRGADPN-AKTWEIFSDYY 379 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 379 (490)
.+.+.|++++|...+++..+.... .....+..+...+...++ +.+|...++. .+..|+ ...+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence 666677777777666665543211 112233444444555555 5555555554 111122 23445566677
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 011226 380 LRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~ 398 (490)
...|++++|...|++..+.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777776554
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=4.7e-11 Score=97.83 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=86.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 011226 92 DQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAK 170 (490)
Q Consensus 92 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (490)
.+..+...+...|++++|...++.+.. .+.+..++..+...+...|++++|.+.+++..+... .+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 444555666666777777777776666 333455666666666667777777777666665431 233444444445555
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544432 223344444444455555555555555554443 33344444444444555555555555
Q ss_pred HHHHHHH
Q 011226 251 ALKELEN 257 (490)
Q Consensus 251 ~~~~~~~ 257 (490)
.++...+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=8e-11 Score=96.43 Aligned_cols=163 Identities=18% Similarity=0.099 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 3444555566666666666666665554 344555556666666666666666666666555322 2444555555555
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE 354 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 354 (490)
...|++++|...++++....+. +...+..+...+...|++++|...++.+.+..+. +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 5556666666655555544322 3334444445555555555555555554443322 3444444455555555555555
Q ss_pred HHHHHHHH
Q 011226 355 ELKERARR 362 (490)
Q Consensus 355 ~~~~~~~~ 362 (490)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=5e-11 Score=117.84 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 265 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
..|+.|..+|.+.|++++|++.|++..+..+. +...+..+..+|.+.|++++|...|++..+..+. +...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33444444444444444444444444443322 2334444444444444444444444444444333 344455555555
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhc
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQE 423 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 423 (490)
...|++++|++.|++..+.+.. +...|..+...|...|++++|++.|+++++.. |+ ...+..+..++...
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--------P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--------PDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHhhhhhHHHhc
Confidence 5555555555555555543221 34445555555555555555555555555554 32 44555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 011226 424 KDVDGAEGFLEILKK 438 (490)
Q Consensus 424 g~~~~a~~~~~~~~~ 438 (490)
|++++|.+.++++++
T Consensus 159 g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 159 CDWTDYDERMKKLVS 173 (723)
T ss_dssp TCCTTHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=8.3e-11 Score=116.30 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=120.5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...++.|..++.+.|++++|++.|++.++. .+.+..+|..+..+|.+.|++++|++.|++..+... -+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 456777777777777777777777777776 566677777777777777777777777777776543 24667777777
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
+|...|++++|++.|++..+..+. +...+..+..++...|++++|...|++..+..+. +...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 777777777777777777776543 4556777777777778888888877777776555 66777777777788888877
Q ss_pred HHHHHHHHHH
Q 011226 353 AEELKERARR 362 (490)
Q Consensus 353 a~~~~~~~~~ 362 (490)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=2.5e-10 Score=97.18 Aligned_cols=197 Identities=16% Similarity=0.067 Sum_probs=155.3
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA-ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF 269 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 269 (490)
.|+..+......+...|++++|...|++..+. .+ ++...+..+..++...|++++|.+.|++..+... .+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKL--TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHH
Confidence 45678888999999999999999999999997 45 7888888899999999999999999999998543 35678889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCc-------hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHH
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTAN-------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMI 341 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li 341 (490)
+..+|...|++++|...+++..+..+. +. ..|..+...+...|++++|...|+...+..+.. +...+..+.
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999987653 33 357778888999999999999999998864320 246677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 342 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.+|...| ..+++.+...+ ..+...|.... ....+.+++|+..+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7776543 44555655543 22444444433 334567899999999999987
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.32 E-value=2e-10 Score=101.72 Aligned_cols=202 Identities=10% Similarity=0.045 Sum_probs=127.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----cCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-C----chhHHHHHH
Q 011226 238 IYVEAGLFEKAERALKELENR----NAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-A----NISYLNMIQ 307 (490)
Q Consensus 238 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~ 307 (490)
.|...|++++|...|++.... |..++ ..+|+.+..+|...|++++|+..+++........ + ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666655432 11111 3456666666666777777776666655432111 1 235667777
Q ss_pred HHHhc-CChhhHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHH
Q 011226 308 VLVNL-KDLPGAEKCFKEWESGCATY-D----IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA------KTWEIF 375 (490)
Q Consensus 308 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l 375 (490)
.|... |++++|...|++..+..+.. + ..++..+...+...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888876532211 1 346788889999999999999999999985433222 146677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCC
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE--QEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 441 (490)
..++...|++++|+..|++.++.... .........+..++.++. ..+++++|...|+++...+|
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPN--FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 77888999999999999999876511 000001223455566664 45678888888877766554
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=1.8e-09 Score=93.74 Aligned_cols=248 Identities=10% Similarity=0.034 Sum_probs=153.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCCh
Q 011226 201 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL 280 (490)
Q Consensus 201 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 280 (490)
+-..-.|++..++.- ..+.. ..........+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e---~~~~~-~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQE---IEKFS-KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHTTTCHHHHTHH---HHTSS-CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHhhHHHHHHHH---HHhcC-ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 334456777666652 22221 111122333345667777766531 12223433444443332 222
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVTNVMIGAYAKEGRLENAEELKER 359 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 359 (490)
|+..|++....+ .++..++..+..++...|++++|.+++......+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566777665544 33445556777778888888888888888766654 22667777788888888888888888888
Q ss_pred HHHcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 011226 360 ARRRGADP-----NAKTWEIFSDY--YLRNG--DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 360 ~~~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 430 (490)
|.+. .| +..+...++.+ ....| ++.+|..+|+++.+.. |+...-..++.++.+.|++++|.
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--------p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--------PTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--------CSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--------CCcccHHHHHHHHHHcCCHHHHH
Confidence 8774 45 24555555555 23333 7888888888887765 65334344444788888888888
Q ss_pred HHHHHHHHc----------CCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 431 GFLEILKKA----------VDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 431 ~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
+.++.+.+. ++ .|+.++..++......|+.+..++.+++.. .|+...
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p-~~~~~LaN~i~l~~~lgk~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVL-YKPTFLANQITLALMQGLDTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHS-SHHHHHHHHHHHHHHTTCTTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHHHHhcccccccccCCC-CCHHHHHHHHHHHHHhChHHHHHHHHHHHh--CCCChH
Confidence 888876664 24 677777677777777788777777776654 455443
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=3.9e-11 Score=105.74 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=111.1
Q ss_pred hcCCCCcHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCCCCHHHHHHHH
Q 011226 170 KTGHPEKIPAIIQEMKAS-------SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD------GRVAADWTTFSNLA 236 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~ 236 (490)
..|++++|...|++..+. ..+....++..+..++...|++++|...++++.+. +..+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345666666666555431 00112334445555555555555555555555443 10122233444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CC--CCCchhHHHHHHHHHhcC
Q 011226 237 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FP--NTANISYLNMIQVLVNLK 313 (490)
Q Consensus 237 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~ 313 (490)
..|...|++++|.+.+++...... +. +. ......+..+...+...|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIRE-------------------------------KVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHH-------------------------------HHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHH-------------------------------HHcCCCChHHHHHHHHHHHHHHHcC
Confidence 555555555555555555433200 00 00 011223444455555555
Q ss_pred ChhhHHHHHHHHHhc------C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCH-HHHHHHHHH
Q 011226 314 DLPGAEKCFKEWESG------C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-------GADPNA-KTWEIFSDY 378 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-~~~~~l~~~ 378 (490)
++++|...+++..+. . ......++..+...|...|++++|...++++.+. ...+.. ..|..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 555555555554332 0 1112345566666677777777777777666542 111222 222222222
Q ss_pred HHhcCC------HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 379 YLRNGD------MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 379 ~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
+...+. +..+...++..... .......+..+...|...|++++|...++++++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVD-------SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHTTCCCCC------------CCCCC-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222222 22222222221111 1123567888999999999999999999998764
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=6.5e-11 Score=104.30 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=88.9
Q ss_pred CcchHHHHHHHHHhcCCCCcHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHHC------C
Q 011226 157 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------SIMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRD------G 223 (490)
Q Consensus 157 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 223 (490)
...++..+...+...|++++|...++++.+. +-.| ...++..+..++...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666666666667777776666666543 1112 2445667777777888888888877777654 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------cCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 224 RVAADWTTFSNLASIYVEAGLFEKAERALKELENR------NAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 224 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
..+....++..+...|...|++++|...+++..+. +..| ...++..+..+|...|++++|...+++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 01334556777778888888888888888777653 1112 245666777778888888888888877664
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=9.7e-11 Score=92.21 Aligned_cols=144 Identities=10% Similarity=0.088 Sum_probs=115.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM 385 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 385 (490)
...+...|++++|+..+.......+. +...+..+...|...|++++|.+.|++.++.... +...|..+...|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 34445667888888888887665433 4556667888899999999999999999886433 677888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEG-FLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
++|+..|+++++.. | +...+..+...|.+.|++++|.+ +++++++..| .++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 99999999999887 5 47888899999999999877665 4689999998 889999988888888775
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=3.8e-09 Score=91.82 Aligned_cols=207 Identities=13% Similarity=0.017 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-C-chhH
Q 011226 228 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-A-NISY 302 (490)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~ 302 (490)
+...+..+...+.+.|++++|...|+++.+..+. + ...+..+..+|...|++++|...|+...+..+.. . ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3344444455555555555555555555443211 1 3344445555555555555555555555443311 1 1233
Q ss_pred HHHHHHHHh--------cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 011226 303 LNMIQVLVN--------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI 374 (490)
Q Consensus 303 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 374 (490)
..+..++.. .|++++|...|+.+.+..+. +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 344444444 56666666666665554332 2222211111 0011000 0112456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCC
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE----------KDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 444 (490)
+...|...|++++|+..|+++++.... .......+..+..+|... |++++|...++++++..| .+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~ 228 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPD----TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-DS 228 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT----STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-CC
Confidence 677888999999999999999887610 001245777788888766 899999999999999887 44
Q ss_pred ---HHhHHHHHHHHHhcC
Q 011226 445 ---VEVFEPLIRTYAAAG 459 (490)
Q Consensus 445 ---~~~~~~l~~~~~~~g 459 (490)
..+...+...+...+
T Consensus 229 ~~~~~a~~~l~~~~~~~~ 246 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLT 246 (261)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444555544433
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=5.8e-09 Score=90.50 Aligned_cols=64 Identities=5% Similarity=-0.152 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCcchHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 011226 123 HLTYGSLLNCYCKELMTEKAEALLEKMKELNL-GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKA 186 (490)
Q Consensus 123 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 186 (490)
..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33333444444444555555555544433331 11233334444444444444444444444443
No 92
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=4.1e-08 Score=86.12 Aligned_cols=239 Identities=10% Similarity=0.049 Sum_probs=161.8
Q ss_pred HHcCCh-hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHH----Hh
Q 011226 204 AAVNDI-SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLY----GQ 276 (490)
Q Consensus 204 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 276 (490)
.+.|.. ++|+.+++.++.. .|.+..+|+.-...+...| +++++++.++.+....++ +..+|+.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 344433 4677777777775 5666666776666666666 777777777777765442 344454433333 33
Q ss_pred c---CChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChh--hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--
Q 011226 277 T---GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP--GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR-- 349 (490)
Q Consensus 277 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 349 (490)
. +++++++.+++.+.+..++ +...|+.-...+.+.|.++ ++.+.++.+.+..+. |...|+.-...+...++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred ccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 3 6677777777777776654 5556666566666667776 777788887777666 67777766666666665
Q ss_pred ----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 350 ----LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL-AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 350 ----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
++++++.++.++...+. |...|+..-..+.+.|+... +..+..++.+.+.. -..++..+..+...+.+.|
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD----QVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT----EESCHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHccC
Confidence 78888888888876554 77788877777777777443 55566666554300 1256788888888888899
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHhHHHHHH
Q 011226 425 DVDGAEGFLEILKK-AVDDLGVEVFEPLIR 453 (490)
Q Consensus 425 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 453 (490)
+.++|.++++.+.+ .+| .....|+..++
T Consensus 273 ~~~~A~~~~~~l~~~~Dp-ir~~yW~~~~~ 301 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNP-IRSNFWDYQIS 301 (306)
T ss_dssp CHHHHHHHHHHHHHTTCG-GGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCh-HHHHHHHHHHh
Confidence 99999999999886 577 77777776554
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=2.7e-09 Score=92.77 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=102.1
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC-HHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH-RD-LSAY 267 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~ 267 (490)
...+..+...+.+.|++++|+..|+.+.+. .+.+ ...+..+..+|.+.|++++|...|++..+..+. |. ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 344444555566666666666666666664 3333 455556666666666666666666666554221 11 2344
Q ss_pred HHHHHHHHh--------cCChhHHHHHHHHHHHhCCCCCchhH-----------------HHHHHHHHhcCChhhHHHHH
Q 011226 268 QFLITLYGQ--------TGNLSEVYRIWRSLRLAFPNTANISY-----------------LNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 268 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a~~~~ 322 (490)
..+..++.. .|++++|...|+++....+. +.... ..+...|...|++++|...|
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 455555555 66666666666666655432 11222 45567778888888888888
Q ss_pred HHHHhcCCCC--ChhhHHHHHHHHHhc----------CChhHHHHHHHHHHHc
Q 011226 323 KEWESGCATY--DIRVTNVMIGAYAKE----------GRLENAEELKERARRR 363 (490)
Q Consensus 323 ~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~ 363 (490)
+.+.+..+.. ....+..+..+|... |++++|...|+.+.+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 8877654432 234566677777755 7788888888888875
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=1.3e-09 Score=96.58 Aligned_cols=209 Identities=8% Similarity=-0.013 Sum_probs=149.9
Q ss_pred CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-CHHHHHHHHHHHHHcCCHHH
Q 011226 173 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAA-DWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~ 247 (490)
++++|...|++. ...|...|++++|...|++.... | .++ ...+|+.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366777776655 44677889999999998887663 2 222 25678889999999999999
Q ss_pred HHHHHHHHHHccCC-CC----HHHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCCCC-----chhHHHHHHHHHhcCChh
Q 011226 248 AERALKELENRNAH-RD----LSAYQFLITLYGQT-GNLSEVYRIWRSLRLAFPNTA-----NISYLNMIQVLVNLKDLP 316 (490)
Q Consensus 248 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~ 316 (490)
|+..+++....... .+ ..+++.+..+|... |++++|+..|++..+..+..+ ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 99999887653211 11 35778888899996 999999999998876433211 245778889999999999
Q ss_pred hHHHHHHHHHhcCCCCChh------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH--hc
Q 011226 317 GAEKCFKEWESGCATYDIR------VTNVMIGAYAKEGRLENAEELKERARRRGADPNAK------TWEIFSDYYL--RN 382 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~ 382 (490)
+|...|+...+..+..... .+..+..++...|++++|...|++..+. .|+.. .+..++.++. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999988765543321 5677788899999999999999998763 33321 2344555554 45
Q ss_pred CCHHHHHHHHHHHHhcC
Q 011226 383 GDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 383 g~~~~A~~~~~~~~~~~ 399 (490)
+++++|+..|+++....
T Consensus 254 ~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHhccCCccH
Confidence 67888888887765544
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=4.2e-09 Score=80.87 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+..+...+...|++++|..+++.+.+..+. +...+..+...+...|++++|..+++++.+.+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 344555555556666666666655544333 445555566666666666666666666665432 244555666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+..|
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 6777777777766666541 2455666666667777777777777776666554
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.15 E-value=2.7e-07 Score=87.58 Aligned_cols=343 Identities=11% Similarity=-0.024 Sum_probs=211.5
Q ss_pred CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC-HHHHHHHHhhcCC----CCCCHhHHHHHHHHHH----HcCCH
Q 011226 69 KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG-IDAAENYFVDLPE----TSKNHLTYGSLLNCYC----KELMT 139 (490)
Q Consensus 69 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~----~~~~~~~~~~li~~~~----~~~~~ 139 (490)
|+++.+..+|+.....- |+...|...+....+.++ .+....+|+.... .+.+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 77899999999887753 688888888877777663 3456666666544 2345677777776543 34678
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHHh-------------cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 011226 140 EKAEALLEKMKELNLGFSSMPFNSLMTLYAK-------------TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV 206 (490)
Q Consensus 140 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 206 (490)
+.+.++|++.+......-...|......-.. .+.+..|..+++.+...--..+...|...+.--...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 8889999988874211111122211111100 011223344444433210001233454444432221
Q ss_pred C--C-----hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC
Q 011226 207 N--D-----ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 207 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (490)
+ - .+.+..+|+++... .+.+...|...+..+.+.|+.++|..++++.... +.+...+. .|+...+
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 1 0 34567899999886 6777888989999999999999999999999987 33433332 2222222
Q ss_pred hhHHHHHHHHHHHhCC---------CC---CchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc
Q 011226 280 LSEVYRIWRSLRLAFP---------NT---ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE 347 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~---------~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 347 (490)
.++. ++.+.+... .+ ....|...+....+.++.+.|..+|... .. +..+...|...+..-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH
Confidence 2222 333322110 01 1234556666666788899999999998 32 223444554333322233
Q ss_pred -CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh
Q 011226 348 -GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV 426 (490)
Q Consensus 348 -~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 426 (490)
++.+.|..+|+...+.- .-+...+...+....+.|+.+.|..+|+++. .....|...+..-...|+.
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----------k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----------KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----------CBHHHHHHHHHHHHHHSCH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCH
Confidence 36999999999998853 2234556667777788899999999999861 3467888888888888999
Q ss_pred HHHHHHHHHHHH
Q 011226 427 DGAEGFLEILKK 438 (490)
Q Consensus 427 ~~a~~~~~~~~~ 438 (490)
+.+..++++...
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988875
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=2.1e-09 Score=89.76 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 011226 230 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 308 (490)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (490)
..+......+...|++++|...|++..... |+ ...|.. ........ ........+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-----~~~~~~~~--------------~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-----TNVDKNSE--------------ISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-----HHSCTTSH--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-----hhhcchhh--------------hhHHHHHHHHHH
Confidence 344445566677777777777777776632 22 222222 00000000 001112236666
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD--MK 386 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~ 386 (490)
+...|++++|...|+...+..+. +...+..+...+...|++++|...|++..+..+. +...|..+...|...|+ ..
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 77777777777777777766555 6667777777777777777777777777775322 45566666666554443 23
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+...+....... |....+.....++...|++++|...|+++++..|
T Consensus 142 ~~~~~~~~~~~~~--------~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 142 KLETDYKKLSSPT--------KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHC---CCC--------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhCCC--------chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3444444433211 2223344445556667777777777777777664
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=3.3e-09 Score=88.63 Aligned_cols=180 Identities=11% Similarity=-0.041 Sum_probs=106.5
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+......+...|++++|+..|++..+. .|.+...|... ...... .........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKNS--------------EISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcchh--------------hhhHHHHHHHHH
Confidence 344455666788999999999999999986 34444444330 000000 001122334566
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC--h
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR--L 350 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~ 350 (490)
+|.+.|++++|+..|++..+..+. +...+..+...+...|++++|...|++..+..+. +...+..+...|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence 666777777777777776665543 4556666677777777777777777777666554 56666666666654443 2
Q ss_pred hHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 351 ENAEELKERARRRGADPNAK--TWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+.+...++... .|+.. .+.....++...|++++|+..|++.++..
T Consensus 141 ~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 141 KKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33444444433 23332 23333445556677888888888887766
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.13 E-value=6.4e-08 Score=91.82 Aligned_cols=359 Identities=9% Similarity=-0.023 Sum_probs=224.4
Q ss_pred cC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCC-HHHHHHH
Q 011226 68 RK-LYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELM-TEKAEAL 145 (490)
Q Consensus 68 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 145 (490)
+| +++.|..+|+.+...- |. |+++.+..+|+......|+...|...+....+.++ .+....+
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 45 3777777777775443 33 78999999999999977899999999988877764 4567778
Q ss_pred HHHHHhC-CC-CCCcchHHHHHHHHH----hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------------Hc
Q 011226 146 LEKMKEL-NL-GFSSMPFNSLMTLYA----KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA-------------AV 206 (490)
Q Consensus 146 ~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------------~~ 206 (490)
|+..... |. ..+...|...+..+. ..++.+.+.++|+..+......-...|......-. ..
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 8877653 42 235577777776543 23567789999999987421111122222221111 11
Q ss_pred CChhHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 207 NDISGAERVIEEMKRDGRVA-ADWTTFSNLASIYVEAG--L-----FEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+.+..|..+++.+... .+ .+...|...+..-...+ - .+++..+|+++.... +.+...|...+..+.+.|
T Consensus 151 ~~y~~ar~~y~~~~~~--~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~ 227 (493)
T 2uy1_A 151 PIFQSSFQRYQQIQPL--IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIG 227 (493)
T ss_dssp HHHHHHHHHHHHHHHH--HHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--HhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 2233445555554432 11 13345555554432221 1 346778999988754 356778888888889999
Q ss_pred ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcC------------CCCChhhHHHHHHHHHh
Q 011226 279 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC------------ATYDIRVTNVMIGAYAK 346 (490)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~ 346 (490)
+.+.|..+++..... |....+.. .|....+.++. ++.+.+.- ......+|...+..+.+
T Consensus 228 ~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 228 QKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp CHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999999987 33332211 22222222222 22222110 01122456777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR-NGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK 424 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 424 (490)
.++.+.|..+|+++ +. ...+...|......-.. .++.+.|..+|+..++.. |+ +..+...++...+.|
T Consensus 299 ~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--------~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--------PDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcC
Confidence 88999999999999 32 22344445432222222 336999999999999875 43 566777788888999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--CcHHHHHHH
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRL 469 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m 469 (490)
+.+.|..+|+++ . .....|...+..-...|+ .+..+++..
T Consensus 369 ~~~~aR~l~er~----~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 369 DEENARALFKRL----E-KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CHHHHHHHHHHS----C-CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999997 2 468889999988888898 344444333
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.13 E-value=2.6e-09 Score=106.17 Aligned_cols=173 Identities=12% Similarity=0.039 Sum_probs=145.4
Q ss_pred HHcCChhHHHHHHHHHH--------HCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMK--------RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
...|++++|++.+++.. +. .+.+...+..+...+.+.|++++|.+.|++..+... .+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence 78899999999999998 54 567788899999999999999999999999988654 46788899999999
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE 355 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 355 (490)
..|++++|...|++..+..+. +...+..+..++...|++++ ...|++..+..+. +...|..+..++...|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987654 56778889999999999999 9999999887766 77889999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 011226 356 LKERARRRGADPN-AKTWEIFSDYYLRNGD 384 (490)
Q Consensus 356 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 384 (490)
.|+++.+. .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99998875 455 4566667777666554
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=7.9e-09 Score=79.27 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++...+. .+...+..+...+...|
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhc
Confidence 334444444444444444444433 223333344444444444444444444444433221 12333333333444444
Q ss_pred ChhHHHHHHHHHH
Q 011226 279 NLSEVYRIWRSLR 291 (490)
Q Consensus 279 ~~~~a~~~~~~~~ 291 (490)
++++|...++.+.
T Consensus 84 ~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 84 DYDEAIEYYQKAL 96 (136)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=2.2e-08 Score=84.78 Aligned_cols=187 Identities=9% Similarity=0.008 Sum_probs=122.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCH--HHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SAYQ 268 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 268 (490)
+...+..+...+...|++++|+..|+++.+.....+ ....+..+..+|.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677788899999999999999988521112 1356778888999999999999999998875443211 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 011226 269 FLITLYGQ------------------TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA 330 (490)
Q Consensus 269 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (490)
.+..++.. .|++++|...|+++.+..+.. .......... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~-~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNS-QYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTC-TTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCC-hhHHHHHHHH----------HHHHHHHH----
Confidence 45555544 345666666666666543321 1111111000 00000000
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.....+...|.+.|++++|...|+++.+.. |+. ..+..+..++.+.|++++|++.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 111345677889999999999999999863 332 467788889999999999999999998886
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=1.1e-08 Score=86.57 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCch--hHH
Q 011226 228 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI--SYL 303 (490)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 303 (490)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|+++.+..+..... .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 445566778889999999999999999987543211 3567778889999999999999999998876543221 344
Q ss_pred HHHHHHHh------------------cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 304 NMIQVLVN------------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 304 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.+..++.. .|+.++|...|+.+.+..+. +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 44445543 34555555555555554332 22222111100 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 366 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.....+...|.+.|++++|+..|+++++.. |+ ...+..+..++.+.|++++|...++.+...+|
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011244567888999999999999999986 54 25688889999999999999999999888776
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=6.8e-09 Score=103.16 Aligned_cols=173 Identities=10% Similarity=-0.029 Sum_probs=146.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHh
Q 011226 240 VEAGLFEKAERALKELE--------NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN 311 (490)
Q Consensus 240 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (490)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|...|++..+..+. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999988 432 345678888999999999999999999999987654 56788889999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC 391 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 391 (490)
.|++++|...|++..+..+. +...+..+..+|...|++++ ...|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999988766 77888999999999999999 9999999986433 667888999999999999999999
Q ss_pred HHHHHhcCCCCCCCCcCC-HHHHHHHHHHHHhcCC
Q 011226 392 LEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKD 425 (490)
Q Consensus 392 ~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 425 (490)
|+++.+.. |+ ...+..+..++...++
T Consensus 557 ~~~al~l~--------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--------TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--------cccHHHHHHHHHHHHccCC
Confidence 99998887 76 6677777778766555
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=3.9e-09 Score=85.61 Aligned_cols=160 Identities=14% Similarity=0.010 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HH
Q 011226 197 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YG 275 (490)
Q Consensus 197 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 275 (490)
..+...+...|++++|...|++..+. .|.+...+..+...+...|++++|...++....... +...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 34455566666666666666666554 455556666666666666666666666666544322 32222221111 11
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAE 354 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~ 354 (490)
..+...+|...+++..+..+. +...+..+...+...|++++|...|+.+.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 112223345555555554332 33444555555555555555555555555544332 2334555555555555555555
Q ss_pred HHHHHHH
Q 011226 355 ELKERAR 361 (490)
Q Consensus 355 ~~~~~~~ 361 (490)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.05 E-value=5.9e-09 Score=101.78 Aligned_cols=153 Identities=11% Similarity=0.026 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHH
Q 011226 243 GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF 322 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (490)
|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 556666666666554322 23555666666666666666666666666554332 3445555666666666666666666
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 011226 323 KEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN---GDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 323 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 399 (490)
++..+..+. +...+..+..+|...|++++|.+.+++..+.... +...+..+...+... |++++|.+.+++.++.+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 666555443 4555566666666666666666666666554221 344555555556666 66666666666666655
No 107
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=1.5e-09 Score=85.33 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=45.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011226 206 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR 285 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 285 (490)
.|++++|+..++..... .+.+...+..+...|.+.|++++|.+.|++..+..+ -+..+|..+..+|...|++++|+.
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 34444444444444332 222223333444444444444444444444444322 233444444444444444444444
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhh
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 317 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 317 (490)
.|+...+..+. +...+..+...+.+.|+.++
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence 44444443322 23334444444444444443
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=1.5e-08 Score=89.35 Aligned_cols=161 Identities=10% Similarity=-0.057 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA 345 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 345 (490)
.+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++.+....+. +..........+.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~~l~ 196 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHHHHH
Confidence 3334444444555555555555555444332 2334444445555555555555555544433221 1111111222234
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC---HHHHHHHHHHHHh
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS---SETIRTFMRHFEQ 422 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 422 (490)
..++.++|...+++..+..+ .+...+..+...+...|++++|+..|.++++.. |+ ...+..++..+..
T Consensus 197 ~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--------p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXD--------LTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTGGGGHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------cccccchHHHHHHHHHHH
Confidence 44455555555555555422 134455555555555556666666555555554 22 3455555555555
Q ss_pred cCChHHHHHHHHHHH
Q 011226 423 EKDVDGAEGFLEILK 437 (490)
Q Consensus 423 ~g~~~~a~~~~~~~~ 437 (490)
.|+.++|...+++.+
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 565555555555443
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=1.2e-08 Score=89.82 Aligned_cols=166 Identities=10% Similarity=-0.058 Sum_probs=112.2
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHH-
Q 011226 191 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF- 269 (490)
Q Consensus 191 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~- 269 (490)
.+...+..+...+...|++++|...|+++.+. .|.+...+..+...+.+.|++++|...++++.... |+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34455666677777788888888888887776 56677777778888888888888888887776543 34332222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcC
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEG 348 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 348 (490)
....+...++.++|...+++.....+. +...+..+...+...|++++|...|..+.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222355666677777777777766543 45566677777777777777777777777665442 2556777777777777
Q ss_pred ChhHHHHHHHHHH
Q 011226 349 RLENAEELKERAR 361 (490)
Q Consensus 349 ~~~~a~~~~~~~~ 361 (490)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777776654
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=8.5e-09 Score=83.55 Aligned_cols=161 Identities=10% Similarity=-0.047 Sum_probs=85.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH-HHh
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL-YAK 170 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 170 (490)
+......+.+.|++++|...|+.... .+.+...+..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34455566667777777777777666 33345666667777777777777777776665543 322222211111 112
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.+...+|...+++..+.. +-+...+..+..++...|++++|...|+++.+......+...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222334555555555432 1134555555555666666666666666655542111123355555555666666666655
Q ss_pred HHHHHH
Q 011226 251 ALKELE 256 (490)
Q Consensus 251 ~~~~~~ 256 (490)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=3.5e-07 Score=80.19 Aligned_cols=216 Identities=10% Similarity=0.025 Sum_probs=131.3
Q ss_pred CcHHHHHHHHHHCCCCC-CHhhHHHHHHHHHHcC--ChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----HHc---CC
Q 011226 175 EKIPAIIQEMKASSIMP-DSYTYNVWMRALAAVN--DISGAERVIEEMKRDGRVAADWTTFSNLASIY----VEA---GL 244 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 244 (490)
++|+.+++.++..+ | +...|+.--.++...| +++++++.++.+... .|-+..+|+.-...+ ... ++
T Consensus 50 ~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHhccccCC
Confidence 45666666666542 2 2334555555555555 667777777766665 455555555544444 334 56
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC------hh
Q 011226 245 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS--EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD------LP 316 (490)
Q Consensus 245 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 316 (490)
+++++++++.+.+... .+..+|+.-.-++.+.|.++ ++++.++.+.+.++. +...|+.-...+...+. ++
T Consensus 126 ~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 6677777777666543 35566665555556666666 677777777666543 44555544444555554 66
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011226 317 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN-AEELKERARRRG--ADPNAKTWEIFSDYYLRNGDMKLAVDCLE 393 (490)
Q Consensus 317 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (490)
++.+.++.+....+. |...|+.+...+.+.|+... +..+...+.+.+ -..+...+..+...+.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777766665 77777777777777666443 444555554432 12355667777777777788888888888
Q ss_pred HHHh
Q 011226 394 KAID 397 (490)
Q Consensus 394 ~~~~ 397 (490)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8776
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=1.3e-08 Score=90.81 Aligned_cols=200 Identities=10% Similarity=0.052 Sum_probs=116.6
Q ss_pred cCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 68 RKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 68 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
.|++++|.+++++..+... ... +...++++.|...|.. ....|...|++++|.+.|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~~---------~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TSF---------MKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CCS---------SSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-ccc---------cCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHHH
Confidence 5677888888887755431 110 1114667777766654 3456777888888888888
Q ss_pred HHHhCCCC-----CCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC---CCC--HhhHHHHHHHHHHcCChhHHHHHHH
Q 011226 148 KMKELNLG-----FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI---MPD--SYTYNVWMRALAAVNDISGAERVIE 217 (490)
Q Consensus 148 ~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~ 217 (490)
+..+.... .-..+|+.+...|...|++++|+..|++..+.-. .+. ..++..+..+|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 76653210 0134666777777778888888888777654310 111 2455566666666 77777777777
Q ss_pred HHHHCCC---C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 011226 218 EMKRDGR---V-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWR 288 (490)
Q Consensus 218 ~~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (490)
+..+... . .....++..+...|.+.|++++|...|++....... ++ ...+..+..++...|++++|...|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7665310 0 001345666666777777777777777666542110 01 1234444455555566666666666
Q ss_pred HHH
Q 011226 289 SLR 291 (490)
Q Consensus 289 ~~~ 291 (490)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 655
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=2.5e-08 Score=75.53 Aligned_cols=111 Identities=14% Similarity=0.023 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR 414 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~ 414 (490)
..+......|.+.|++++|+..|++.++.... +...|..+..++.+.|++++|+..+++.++... .+...|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-------KFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-------hhhHHHH
Confidence 45667788899999999999999998886433 677888888899999999999999999998861 4478889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 415 TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 415 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
.+..++...|++++|...|+++++..| .+..++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDP-SNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHHh
Confidence 999999999999999999999999998 788888777654
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=1.7e-08 Score=89.91 Aligned_cols=231 Identities=10% Similarity=0.096 Sum_probs=146.8
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.+++++..+.. +.. + +...++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence 355566777776665431 100 0 00135555555555543 456777888888888
Q ss_pred HHHHHHHccCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---CC--chhHHHHHHHHHhcCChhhHHH
Q 011226 251 ALKELENRNAHR-D----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---TA--NISYLNMIQVLVNLKDLPGAEK 320 (490)
Q Consensus 251 ~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~ 320 (490)
.|.+........ + ..+|+.+..+|...|++++|+..|++....... +. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 888775532111 1 346777888888889999999988877654211 11 2456677788877 99999999
Q ss_pred HHHHHHhcCCCC-----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 011226 321 CFKEWESGCATY-----DIRVTNVMIGAYAKEGRLENAEELKERARRRG----ADPN-AKTWEIFSDYYLRNGDMKLAVD 390 (490)
Q Consensus 321 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~ 390 (490)
.|++........ ...++..+...|...|++++|+..|++..+.. ..+. ...+..+...+...|++++|+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998875432111 14577888899999999999999999988631 1111 1255566667778899999999
Q ss_pred HHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHH
Q 011226 391 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGF 432 (490)
Q Consensus 391 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 432 (490)
.|++.+ .... ............++.++ ..|+.+.+..+
T Consensus 217 ~~~~al-~~p~--~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPG--FSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTT--STTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCC--CCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999998 5411 00001123445555555 56777666653
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=7.4e-08 Score=80.57 Aligned_cols=177 Identities=11% Similarity=0.025 Sum_probs=119.3
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC----CHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG----LFEKAER 250 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~ 250 (490)
.+|+++|++..+.| ++..+..+...+...+++++|...|++..+.| +...+..|...|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 35667777777664 66677777777777888888888888877754 45566667777766 5 7888888
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCC-CCchhHHHHHHHHHh----cCChhhHHHH
Q 011226 251 ALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVN----LKDLPGAEKC 321 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 321 (490)
.|++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .....+..|...|.. .++.++|...
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 888776643 45566667767766 67778888887777655431 014556666677766 6677788888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHcC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKE-G-----RLENAEELKERARRRG 364 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~~~~~~ 364 (490)
|+...+.+ .+...+..|...|... | +.++|...|+...+.|
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77776652 1334556666666543 2 6777888877777765
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=2.4e-08 Score=97.48 Aligned_cols=156 Identities=8% Similarity=0.016 Sum_probs=94.9
Q ss_pred cCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER 250 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 250 (490)
.|++++|.+.|++..+.. +-+...+..+..++...|++++|...+++..+. .+.+...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777776542 224566677777777777777777777777775 45566777777777777777777777
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhc---CChhhHHHHHHHHHh
Q 011226 251 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---KDLPGAEKCFKEWES 327 (490)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 327 (490)
.+++..+... .+...+..+..+|...|++++|.+.+++..+..+. +...+..+...+... |+.++|.+.+++..+
T Consensus 79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777766543 34566777777777777777777777777665442 345566666777777 777777777777666
Q ss_pred cCCC
Q 011226 328 GCAT 331 (490)
Q Consensus 328 ~~~~ 331 (490)
.++.
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 5543
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=9.5e-08 Score=79.91 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC----ChhhHHHHHHHHHhcCCCCChhhHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK----DLPGAEKCFKEWESGCATYDIRVTNV 339 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 339 (490)
...+..+...|...+++++|+..|++..+.+ +...+..+...|.. + +.++|.+.|+...+.+ +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444332 22333333333433 3 4555555555544432 3344444
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 340 MIGAYAK----EGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 340 li~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
|...|.. .+++++|...|++..+.|.. .+...+..+...|.. .+++++|+.+|++..+.+ .+.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--------~~~ 162 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--------RTG 162 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--------CTT
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--------CCH
Confidence 4444544 45666666666665554321 014455555555555 556666666666666653 233
Q ss_pred HHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQE-K-----DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 441 (490)
..+..|...|... | ++++|...|++..+.|.
T Consensus 163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3455555555432 2 66777777776666654
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.88 E-value=1.4e-07 Score=71.05 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=94.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|+.+++++.+... .+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------ccHHHH
Confidence 46677778888888899999998888887532 3567778888888889999999999998888751 457788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 459 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 459 (490)
..+...+...|++++|...++++.+..| .+...+..+...+...|
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhcc
Confidence 8888889999999999999999988887 77788887777776554
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.87 E-value=2.6e-07 Score=81.69 Aligned_cols=162 Identities=9% Similarity=-0.057 Sum_probs=78.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCc----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC-CC----HhhHHHH
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNL-GFSS----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM-PD----SYTYNVW 199 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l 199 (490)
+..+...|++++|.+++++..+... .|+. ..+..+...+...+++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3444455555555555555444211 0111 11223344444444555555555555542111 11 1245555
Q ss_pred HHHHHHcCChhHHHHHHHHHHH----C-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc----CCCC-HHHHHH
Q 011226 200 MRALAAVNDISGAERVIEEMKR----D-GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN----AHRD-LSAYQF 269 (490)
Q Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~-~~~~~~ 269 (490)
..+|...|++++|...|+++.+ . +..+....++..+...|.+.|++++|...+++..+.. ..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6666666666666666666552 1 1011122355566666666666666666666554321 1111 345666
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHH
Q 011226 270 LITLYGQTGN-LSEVYRIWRSLR 291 (490)
Q Consensus 270 l~~~~~~~~~-~~~a~~~~~~~~ 291 (490)
+..+|...|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666666554
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.87 E-value=2e-06 Score=76.25 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-C-ChhHHHHH
Q 011226 210 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQT-G-NLSEVYRI 286 (490)
Q Consensus 210 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~ 286 (490)
++|+++++.++.. .+.+..+|+.--..+...| .+++++++++.+....+ .+..+|+.-..++... + ++++++++
T Consensus 71 e~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3455555555554 3444444544444444444 35555555555554332 2344444433333333 3 44555555
Q ss_pred HHHHHHhCCCCCchhHHHHHHHHHhcCChh--------hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-------hh
Q 011226 287 WRSLRLAFPNTANISYLNMIQVLVNLKDLP--------GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR-------LE 351 (490)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~ 351 (490)
++.+.+..++ +...|+--...+.+.|.++ ++.+.++.+.+..+. |...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 5555443322 2333333222222233333 566666666665555 66666666555555554 56
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcCCCCCCCCcCCHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDM--------------------KLAVDCLEKAIDTGRGDGGKWVPSSE 411 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~~~~~~~~~p~~~ 411 (490)
++++.++++....+. |...|+.+-..+.+.|+. ....++..++..... +...-.+++.
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 303 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL-PEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC-CSSCCSCCHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc-ccccCCCcHH
Confidence 777777777765433 566666655555555543 222222222222210 0011236788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHhHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILK-KAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~ 454 (490)
.+..++..|...|+.++|.++++.+. +.+| ....-|+-.++.
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp-ir~~yw~~~~~~ 346 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ-MRAGYWEFRRRE 346 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG-GGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh-HHHHHHHHHHHh
Confidence 89999999999999999999999987 4565 666666655543
No 121
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.86 E-value=5.6e-06 Score=73.06 Aligned_cols=212 Identities=11% Similarity=0.082 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC-hhHHHH
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN-LSEVYR 285 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~ 285 (490)
+++++.+++.+... .|-+..+|+.-...+.+.+ .+++++.+++.+.+..+ .|..+|+.-.-++...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 34555555555554 4455555555444444444 24555555555555432 244444444444444444 345555
Q ss_pred HHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 011226 286 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA 365 (490)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 365 (490)
.++.+....+. |...|+.....+...+....+- ..+ . ...+.++++++.+.......+
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG-------PQG-R-------------LPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--------------C-------------CCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhCC
Confidence 55555544432 3333333322222221100000 000 0 000345667777777776533
Q ss_pred CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHH-----HHHHhcCChHHH
Q 011226 366 DPNAKTWEIFSDYYLRN-----------GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM-----RHFEQEKDVDGA 429 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~a 429 (490)
. |...|+.+-..+.+. +.++++++.++++.+.. |+. .|+.+. ......|..+++
T Consensus 225 ~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--------pd~-~w~l~~~~~~~~~~~~~~~~~~~ 294 (331)
T 3dss_A 225 N-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--------PEN-KWCLLTIILLMRALDPLLYEKET 294 (331)
T ss_dssp T-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--------TTC-HHHHHHHHHHHHHHCTTTTHHHH
T ss_pred C-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--------ccc-chHHHHHHHHHHhhcccccHHHH
Confidence 3 555665444444333 45789999999999987 663 333222 222346788899
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 011226 430 EGFLEILKKAVDDLGVEVFEPLIRTYA 456 (490)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 456 (490)
...+.++.+.+| ....-|.-+...+.
T Consensus 295 ~~~l~~l~~~Dp-~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 295 LQYFSTLKAVDP-MRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-chhhHHHHHHHHHH
Confidence 999999999998 77777777766553
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-07 Score=72.01 Aligned_cols=119 Identities=15% Similarity=0.034 Sum_probs=96.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|+..++++.+.. ..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 86 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------PTFIKG 86 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCchHH
Confidence 456677788888888899999988888887532 266778888888888899999999999988876 135778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+..+..++...|++++|...++++.+..+ .+...+..+..++...|+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhcC
Confidence 88888889999999999999999988887 677788888888877664
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.83 E-value=4.4e-07 Score=80.17 Aligned_cols=62 Identities=13% Similarity=-0.063 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRR----GADPN-AKTWEIFSDYYLRNGD-MKLAVDCLEKAID 397 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 397 (490)
++..+...|.+.|++++|...+++..+. +..+. ...|..+..++.+.|+ +++|.+.++++..
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4444555555555555555555544431 11111 3344455555555552 3555555555443
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=7.6e-07 Score=78.66 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=120.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCc-----hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC---CC--hh
Q 011226 266 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT---YD--IR 335 (490)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 335 (490)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+......... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677788888888887776654332111 12334556667788899999888887653221 11 34
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRR-GADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS 409 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~ 409 (490)
+++.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|+..+++.++..... .....-
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CcHHHH
Confidence 7888899999999999999999998731 01222 1577888889999999999999999988653100 001112
Q ss_pred HHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 011226 410 SETIRTFMRHFEQEKDVDGA-EGFLEILKK 438 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 438 (490)
..+|..+..+|.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67889999999999999999 777888765
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=3.8e-07 Score=76.29 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+..+...+...|++++|...|+... .|+...+..+...|...|++++|...|++..+... .+...+..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 3445566677777888777777653 34667777888888888888888888888877532 356677778888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCC----------CcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 382 NGDMKLAVDCLEKAIDTGRGDGGK----------WVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
.|++++|+..|+++.+.... .. ..| ....+..+..++...|++++|...++++.+..|.........
T Consensus 84 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG--NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT--CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred cccHHHHHHHHHHHHHhCCC--ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 88888888888888876410 00 112 247888999999999999999999999999987544444444
Q ss_pred HHHHH
Q 011226 451 LIRTY 455 (490)
Q Consensus 451 l~~~~ 455 (490)
.+..+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=3.5e-07 Score=69.42 Aligned_cols=120 Identities=13% Similarity=-0.032 Sum_probs=97.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..+++..+... .+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------AYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------cCHHH
Confidence 345667777888888899999999988887532 3567778888888889999999999999888751 34778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
+..+...+...|++++|...++++.+..| .+...+..+..++...|+.
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 88888889999999999999999998887 7888888888888887763
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=3.4e-07 Score=76.59 Aligned_cols=99 Identities=9% Similarity=0.012 Sum_probs=45.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC---------
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--------- 262 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------- 262 (490)
+...+..+..++...|++++|...|++..+. .+.+...+..+..+|...|++++|.+.|++..+.....
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 113 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhc
Confidence 3344444444444444444444444444443 33344444444444444555555555444444422110
Q ss_pred ------CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 263 ------DLSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 263 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
....+..+..+|...|++++|...|+...+
T Consensus 114 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 013444445555555555555555555544
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=7.5e-08 Score=75.18 Aligned_cols=101 Identities=14% Similarity=0.034 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+.+.|++++|...|+++.+..+. +...|..+..+|...|++++|+..|+++++... .++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------NDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-------SCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-------CCcHH
Confidence 4456677777888888888888888888876432 667778888888888888888888888888761 34677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
|..+..+|...|++++|...|+++++..+
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888888888775
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=6.6e-08 Score=75.58 Aligned_cols=111 Identities=9% Similarity=-0.000 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011226 322 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 401 (490)
++.+....+. +...+..+...+...|++++|...|+.....+.. +...|..+..+|...|++++|+..|++++....
T Consensus 10 ~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p- 86 (148)
T 2vgx_A 10 IAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI- 86 (148)
T ss_dssp HHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 4444443322 4556667777888888888888888888876432 667777788888888888888888888888761
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 402 DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 402 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+...+..+..++...|++++|...|+++++..|
T Consensus 87 ------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 ------XEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp ------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3467788888888888899999888888888776
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=1.3e-07 Score=73.77 Aligned_cols=97 Identities=15% Similarity=0.074 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
.+..+...+.+.|++++|...|+.+....+. +...|..+..+|...|++++|...|++..+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 4566667777777788888777777776655 6777777777777777888888777777775432 4566777777777
Q ss_pred hcCCHHHHHHHHHHHHhcC
Q 011226 381 RNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~ 399 (490)
..|++++|+..|++.++..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7778888888777777776
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=3.4e-06 Score=74.81 Aligned_cols=178 Identities=8% Similarity=0.005 Sum_probs=114.7
Q ss_pred HHHHhcc-CCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhC-CHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHc-C
Q 011226 62 LKKLRDR-KLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQ-GIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKE-L 137 (490)
Q Consensus 62 l~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~-~ 137 (490)
++...+. ...++|+++++.+...+ +-+..+++.--.++...| .+++++++++.+.. .+.+..+|+.-...+.+. +
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 3333333 44467888888888776 334555666666666677 48888888888777 445566777766666665 6
Q ss_pred -CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCC--------cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC
Q 011226 138 -MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE--------KIPAIIQEMKASSIMPDSYTYNVWMRALAAVND 208 (490)
Q Consensus 138 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 208 (490)
++++++++++.+.+... .|..+|+.-.-.+.+.+.++ ++++.++++.+.... |...|+....++.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp SCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred CChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 77888888888887654 46666666555555555555 677777777665433 55666666555555554
Q ss_pred -------hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC
Q 011226 209 -------ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL 244 (490)
Q Consensus 209 -------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (490)
++++++.+++.+.. .+-|...|+.+-..+.+.|.
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 46666666666665 56666666665555555444
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=2.1e-07 Score=70.29 Aligned_cols=111 Identities=10% Similarity=-0.003 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 370 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
..+......|.+.|++++|++.|++.++... .+...|..+..++.+.|++++|+..++++++.+| .+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~ 85 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYI 85 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHH
Confidence 4566778889999999999999999999871 4588999999999999999999999999999999 8999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHhhCCCCCCHHHHHHHHHhh
Q 011226 450 PLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 488 (490)
Q Consensus 450 ~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c 488 (490)
.+..+|...|++.+++...-+...+.|+......-.+-|
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999998888877777777888876654444444
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=1.6e-06 Score=76.63 Aligned_cols=166 Identities=7% Similarity=-0.068 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-----chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC---CC--Hh
Q 011226 125 TYGSLLNCYCKELMTEKAEALLEKMKELNLGFSS-----MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM---PD--SY 194 (490)
Q Consensus 125 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---p~--~~ 194 (490)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566677778888888777776664321100 11223334445556666666666665542111 11 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC----CC-CH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGR-VAAD----WTTFSNLASIYVEAGLFEKAERALKELENRNA----HR-DL 264 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-~~ 264 (490)
+++.+...|...|++++|...|++..+... .+.+ ..++..+...|.+.|++++|...+++..+... .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 556666666666777777766666652100 1111 14556666666666666666666666543210 00 13
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHH
Q 011226 265 SAYQFLITLYGQTGNLSEV-YRIWRSL 290 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a-~~~~~~~ 290 (490)
.+|..+..+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4555566666666666666 4445544
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=2.6e-07 Score=74.75 Aligned_cols=122 Identities=7% Similarity=0.043 Sum_probs=75.1
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY-YLRNGDM--KL 387 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 387 (490)
..|++++|...++......+. +...+..+...|...|++++|...|+++.+.... +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 456666666666666655443 5566666666777777777777777776664322 44555555555 5566666 77
Q ss_pred HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
|+..++++++... .+...+..+...+...|++++|...++++.+..|
T Consensus 100 A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 100 TRAMIDKALALDS-------NEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 7777777776651 2356666666677777777777777777777665
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=6.8e-08 Score=84.72 Aligned_cols=193 Identities=12% Similarity=0.006 Sum_probs=113.8
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNC 132 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~ 132 (490)
+...+..+...+.+.|++++|+..|+...... +.+...+..+..++.+.|++++|...++.... .+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566677777888888888888888887765 33667777788888888888888888888877 34456678888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhH
Q 011226 133 YCKELMTEKAEALLEKMKELNLGFSS-MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISG 211 (490)
Q Consensus 133 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 211 (490)
+...|++++|...|++..+.+ |+. ..+...+....+. .++.. +..........+......+.. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888888877643 211 1111111111111 01111 112222223333333333322 2 2567777
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 011226 212 AERVIEEMKRDGRVAADWTTFSNLASIYVEA-GLFEKAERALKELEN 257 (490)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 257 (490)
|.+.++...+. .+.+......+...+.+. +.+++|.++|....+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777666653 233333333343444443 456666666665543
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.72 E-value=5.4e-07 Score=68.13 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...|++..+... .+...|..+..++...|++++|+..+++.++... .+...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CcHHHH
Confidence 34566777888888999999999998887643 2667888888888899999999999999988861 347788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAV------DDLGVEVFEPLIRTYA 456 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~ 456 (490)
..+..++...|++++|...|+++.+.. | .+..++..+..+..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p-~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGS-SAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch-hHHHHHHHHHHHHH
Confidence 888889999999999999999998887 5 56666666655543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=8.3e-07 Score=70.68 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 380 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 380 (490)
.+..+...+...|++++|...|.......+. +..++..+...+...|++++|...+++..+... .+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 3445556666667777777777666655443 566666777777777777777777777776532 24566777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 011226 381 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR--TFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
..|++++|...++++.+... .+...+. ..+..+...|++++|...+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77888888888887777651 2344443 333336667777888777776544
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=9.3e-07 Score=70.40 Aligned_cols=126 Identities=10% Similarity=0.037 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.+..+...+...|++++|...|++..+. .+.+..++..+...+...|++++|...+++...... .+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 3445555566666666666666666654 344555666666666666666666666666655432 2445555555566
Q ss_pred HhcCChhHHHHHHHHHHHhCCCCCchhH--HHHHHHHHhcCChhhHHHHHHH
Q 011226 275 GQTGNLSEVYRIWRSLRLAFPNTANISY--LNMIQVLVNLKDLPGAEKCFKE 324 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~ 324 (490)
...|++++|...|++.....+. +...+ ...+..+...|++++|...+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 6666666666666665554332 22222 1222224444555555555444
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2e-07 Score=79.76 Aligned_cols=188 Identities=11% Similarity=-0.080 Sum_probs=122.0
Q ss_pred ccCCchHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhhCCHHHHHHHHhhcCCCCCCH----------------
Q 011226 67 DRKLYYPALKLSENMEKRGMNKTVSDQAIH-------LDLVAKVQGIDAAENYFVDLPETSKNH---------------- 123 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------- 123 (490)
..++...|.+.|..+.... +-....|..+ ...+.+.++..++...+.......|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4788888999999887776 2345556655 455555555566655555544422221
Q ss_pred ------hHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC--Hhh
Q 011226 124 ------LTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD--SYT 195 (490)
Q Consensus 124 ------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~ 195 (490)
..+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 123345666777888888888888877655 433355555567778888888888887444321 111 235
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAA--DWTTFSNLASIYVEAGLFEKAERALKELENRN 259 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 259 (490)
+..+..++...|++++|+..|++..... ..| ..........++.+.|+.++|...|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667777888888888888888877532 313 33455667777778888888888888887754
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.6e-07 Score=76.05 Aligned_cols=121 Identities=7% Similarity=0.092 Sum_probs=68.6
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH-HHhcCCh--hH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA-YAKEGRL--EN 352 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 352 (490)
..|++++|...++......+. +...+..+...+...|++++|...|+...+..+. +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666665554432 3445555666666666666666666665554433 45555555555 5566666 66
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|...++.+.+.... +...+..+...+...|++++|+..|+++.+..
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 66666666664322 34555566666666666666766666666665
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.68 E-value=1.4e-06 Score=65.35 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++++..... .+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 34455555555666666666666665554 344455555555666666666666666655554322 244455555555
Q ss_pred HHhcCChhHHHHHHHHHHHhC
Q 011226 274 YGQTGNLSEVYRIWRSLRLAF 294 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ 294 (490)
+...|++++|...++++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 555566666665555555443
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=1.3e-06 Score=64.86 Aligned_cols=112 Identities=15% Similarity=0.027 Sum_probs=85.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+++..+... .+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------DWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------ccHHHH
Confidence 45566677778888888888888888877532 2566777777788888888888888888888761 347778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 454 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 454 (490)
..+..++...|++++|...++++.+..| .+...+..+...
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 115 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 8888888888888888888888888877 666666665544
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=1.2e-06 Score=66.29 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|...++....... .+...+..+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 34444555555555555555555555554 344455555555555555555555555555554322 234445555555
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
+...|++++|...|++.....+. +...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 55555555555555555544322 2333344444444433
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.67 E-value=1.5e-07 Score=82.61 Aligned_cols=195 Identities=9% Similarity=-0.020 Sum_probs=125.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|...+++..+... .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4556677778888889999999999888886 566788888888888899999999998888877533 3567788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
.+|...|++++|...|+...+..+.. ...+...+....+. ..+. -+..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 88888999999999888877654321 11111112211111 1111 1122222333334444444433 2 268888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHhc
Q 011226 352 NAEELKERARRRGADPNAKTWEIFS-DYYLRN-GDMKLAVDCLEKAIDT 398 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~-g~~~~A~~~~~~~~~~ 398 (490)
+|.+.++...+. .|+......-+ ..+.+. +.+++|.++|.++.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 898888887764 45544333323 333333 5678899999887764
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=2.6e-07 Score=71.67 Aligned_cols=105 Identities=10% Similarity=-0.039 Sum_probs=75.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHH
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI 413 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~ 413 (490)
...+..+...+...|++++|...|+.....+.. +...|..+..++...|++++|+..|++++.... .++..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~ 89 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-------NEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCTHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCcHHH
Confidence 344555666777788888888888887775332 566677777778888888888888888887761 346667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
..+..++...|++++|...|+++++..| .++..
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 122 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAA-AQPAH 122 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-TCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCcch
Confidence 7777788888888888888888877765 34333
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=3.7e-07 Score=75.62 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=40.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc----CC-CCHHHHHHHHHHHHhcCC
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN----AH-RDLSAYQFLITLYGQTGN 279 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~ 279 (490)
..|++++|.++++.+... ......++..+...+...|++++|...+++..... .. ....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 455566666644443321 22344455555666666666666666665554311 00 112334444555555555
Q ss_pred hhHHHHHHHHHH
Q 011226 280 LSEVYRIWRSLR 291 (490)
Q Consensus 280 ~~~a~~~~~~~~ 291 (490)
+++|...+++..
T Consensus 82 ~~~A~~~~~~al 93 (203)
T 3gw4_A 82 WDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=1.2e-06 Score=66.78 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++..+... .+...+..+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 33444444555555555555555555543 333444455555555555555555555555444322 233444444445
Q ss_pred HHhcCChhHHHHHHHHHHHh
Q 011226 274 YGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (490)
+...|++++|...|++....
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555544443
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.62 E-value=4.1e-07 Score=75.34 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--cC--CC--C
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR--NA--HR--D 263 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~--~~--~ 263 (490)
..+..+...+...|++++|...+++.... +..+....++..+...+...|++++|.+.+++.... .. .+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444555555555555555555554441 101122334455555566666666666665554432 00 00 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhHHHHHHHH
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEW 325 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 325 (490)
...+..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 233444555555556666666555554422100 01 112334444455555555555555443
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.61 E-value=5.9e-07 Score=70.07 Aligned_cols=96 Identities=11% Similarity=-0.086 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 195 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 195 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|...|++.....+ .+...+..+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3444445555555555555555555554 344555555555555555555555555555554332 2334444555555
Q ss_pred HhcCChhHHHHHHHHHHHh
Q 011226 275 GQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (490)
...|++++|...|+...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.61 E-value=4.8e-07 Score=77.48 Aligned_cols=188 Identities=11% Similarity=-0.085 Sum_probs=109.0
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHccCCCC--------------
Q 011226 205 AVNDISGAERVIEEMKRDGRVAADWTTFSNL-------ASIYVEAGLFEKAERALKELENRNAHRD-------------- 263 (490)
Q Consensus 205 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------- 263 (490)
..++...|.+.|.++... .|.....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 466777777777777775 56666666665 3444444444444444443332 1111
Q ss_pred --------HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--
Q 011226 264 --------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD-- 333 (490)
Q Consensus 264 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 333 (490)
....-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 1122334556667777777777777665543 222244445556677777777777776443321 111
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556667777777777777777777764322143 2244455556677777777777777777776
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=1.7e-07 Score=77.48 Aligned_cols=118 Identities=9% Similarity=-0.068 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPN---------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
..+..+...+...|++++|...|++..+...... ...|..+..+|...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566666777777777777777766322111 2677888889999999999999999999986
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
..+...+..+..++...|++++|...|+++++..| .+..++..+..++...++
T Consensus 119 -------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 119 -------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp -------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHH
T ss_pred -------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHH
Confidence 14588899999999999999999999999999998 789999999999888776
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.60 E-value=2.1e-05 Score=69.37 Aligned_cols=171 Identities=8% Similarity=-0.001 Sum_probs=98.9
Q ss_pred HHhccCCch-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC----------HHHHHHHHhhcCC-CCCCHhHHHHHHH
Q 011226 64 KLRDRKLYY-PALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG----------IDAAENYFVDLPE-TSKNHLTYGSLLN 131 (490)
Q Consensus 64 ~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~-~~~~~~~~~~li~ 131 (490)
...+.|.++ +|+++++.+...+ +-+..+++.--.++...+. +++++.+++.+.. .+.+..+|+.-.-
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334455555 7888888887776 2233344443333333322 5666777766666 4456667766666
Q ss_pred HHHHcC--CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC-CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc--
Q 011226 132 CYCKEL--MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP-EKIPAIIQEMKASSIMPDSYTYNVWMRALAAV-- 206 (490)
Q Consensus 132 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 206 (490)
.+.+.+ ++++++.+++.+.+.+. .|..+|+.-.-.+...|.. +++++.++.+++..+. |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhh
Confidence 666666 36777777777777654 4566666665555666663 6677777777665432 555565555444443
Q ss_pred ------------CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 011226 207 ------------NDISGAERVIEEMKRDGRVAADWTTFSNLASIY 239 (490)
Q Consensus 207 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
+.++++++.+...... .|-|..+|+.+-..+
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 237 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 2345556666665554 455555555443333
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.59 E-value=1.4e-06 Score=69.45 Aligned_cols=105 Identities=16% Similarity=-0.018 Sum_probs=78.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|+..|++..+.... +...|..+..+|...|++++|+..|++.++... .+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------KYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHH
Confidence 3456667777778888888888888888775322 566777777788888888888888888887761 34777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
|..+..++...|++++|...|+++++..| .+..
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 114 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEG-NGGS 114 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHS-SSCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchH
Confidence 77888888888888888888888888776 4443
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=1e-06 Score=79.34 Aligned_cols=123 Identities=11% Similarity=-0.001 Sum_probs=101.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
+...+..+...|...|++++|...|++..+...... ...|..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777888888888888888777532211 478888889999999999999999999998
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcH
Q 011226 399 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 399 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (490)
.. .+...+..+..+|...|++++|...|+++++..| .+..++..+..++...|+..+
T Consensus 226 ~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 226 DS-------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp CT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 61 4588899999999999999999999999999998 888999999999999888443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.57 E-value=1.5e-06 Score=65.73 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----H
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----S 410 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~ 410 (490)
..+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|++.+++.++.... ..++ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE----TRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc----cchhhHHHH
Confidence 45667888899999999999999999986433 5778888999999999999999999999876511 0111 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPL 451 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 451 (490)
.+|..+..++...|++++|.+.|++.+...+ |+.+...|
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~--~~~~~~~l 122 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR--DPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--CHHHHHHH
Confidence 4678888999999999999999999998764 55554443
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.57 E-value=2.1e-06 Score=77.29 Aligned_cols=137 Identities=9% Similarity=-0.094 Sum_probs=63.6
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 011226 193 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 272 (490)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 272 (490)
...+..+...+.+.|++++|+..|++..+. .+.+... ..+.+.++- . .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~------------~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF------------SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC------------CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC------------ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 445566666666677777777777666664 2222100 000000000 0 00234444444
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhH
Q 011226 273 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN 352 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 352 (490)
+|.+.|++++|+..+++..+..+. +...+..+..+|...|++++|...|+...+..+. +...+..+..++...|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555444322 3334444455555555555555555555444333 34444455555555555554
Q ss_pred H
Q 011226 353 A 353 (490)
Q Consensus 353 a 353 (490)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=3.5e-06 Score=65.45 Aligned_cols=113 Identities=16% Similarity=-0.024 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP 408 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p 408 (490)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|+..+++..+... .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------G 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-------c
Confidence 5566777778888888888888888888874 455 56677777888888999999999988888751 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 409 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+...+..+..++...|++++|...|+++.+..| .+..++..+....
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRNIS 143 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 577788888888889999999999999888887 6777776665554
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=3.1e-06 Score=64.88 Aligned_cols=101 Identities=13% Similarity=-0.029 Sum_probs=75.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+...+..+...+...|++++|...|+...+.... +...|..+...+...|++++|+..+++.++... .+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~ 79 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-------QSVKA 79 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------hhHHH
Confidence 5566777777778888888888888877775322 566777777777888888888888888877751 34677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+..+..++...|++++|...|+++.+..|
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 77788888888888888888888777655
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.53 E-value=1.9e-07 Score=77.21 Aligned_cols=172 Identities=9% Similarity=-0.026 Sum_probs=90.7
Q ss_pred HHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCC
Q 011226 97 LDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE 175 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (490)
+......|+++.+.+.|+.-.. .......+..+...+...|++++|++.|++..... |+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~----------- 77 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ----------- 77 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH-----------
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh-----------
Confidence 3444455677777777765443 11234466777788888899999999998888753 221111000
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
...-... ......+..+..++...|++++|+..++...+. .+.+...+..+..+|...|++++|...|++.
T Consensus 78 -~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -ILLDKKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -HHHHHHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -hHHHHHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 001345556666677777777777777777765 4556666777777777777777777777776
Q ss_pred HHccCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHH
Q 011226 256 ENRNAHRDLSAYQFLITLYGQTGNLSEVY-RIWRSLR 291 (490)
Q Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 291 (490)
..... .+...+..+..++...++..++. ..+..+.
T Consensus 149 l~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 149 ASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHST-TCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66432 24555666666666666665555 4444443
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=2.2e-06 Score=64.74 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEIF 375 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~----~~~~~~l 375 (490)
+..+...+.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+++.++.+. .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 445566666666666666666666665544 556666666777777777777777766665311 111 1245556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Q 011226 376 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT 415 (490)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~ 415 (490)
..++...|++++|++.|++.+... |++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~--------~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEF--------RDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--------CCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--------cCHHHHHH
Confidence 667777788888888888777765 66655443
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.50 E-value=2.1e-06 Score=62.92 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC--CH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SS 410 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~ 410 (490)
+...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|+..+++..+... . +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-------DEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-------CTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-------ccchH
Confidence 344555666667777777777777777766532 2455666666777777777777777777777651 2 46
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHcCC
Q 011226 411 ETIRTFMRHFEQE-KDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 411 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~ 441 (490)
..+..+..++... |++++|.+.++++....|
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 6677777777777 777777777777777665
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=2.1e-06 Score=64.79 Aligned_cols=107 Identities=9% Similarity=-0.045 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
...|......+.+.|++++|+..|++.++... .+...|..+..++.+.|++++|...++++++.+| .+..+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHH
Confidence 34667778889999999999999999999871 4588999999999999999999999999999998 889999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHhhCCCC------CCHHHHHH
Q 011226 449 EPLIRTYAAAGRTSPVMLRRLKMEKVE------VSEASKKL 483 (490)
Q Consensus 449 ~~l~~~~~~~g~~~~~~~~~m~~~~~~------p~~~~~~~ 483 (490)
..+..+|...|++.+++....+...+. |+......
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~ 116 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ 116 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHH
Confidence 999999999999777776555555566 66554433
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.48 E-value=1.3e-06 Score=67.53 Aligned_cols=95 Identities=14% Similarity=-0.001 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG 275 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (490)
+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|...|+......+ .+...+..+..+|.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 334445555666666666666666554 445555555566666666666666666666555432 23444555555566
Q ss_pred hcCChhHHHHHHHHHHHh
Q 011226 276 QTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (490)
..|++++|...|+.....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666555543
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.47 E-value=3.1e-06 Score=61.99 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLI 271 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 271 (490)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++..+... . +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHH
Confidence 34455555666666666666666666654 344555666666666666666666666666655322 2 345555666
Q ss_pred HHHHhc-CChhHHHHHHHHHHHhCC
Q 011226 272 TLYGQT-GNLSEVYRIWRSLRLAFP 295 (490)
Q Consensus 272 ~~~~~~-~~~~~a~~~~~~~~~~~~ 295 (490)
.++... |++++|.+.++......+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 666666 666666666666655443
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=9.6e-06 Score=59.92 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++...... .+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 34444555555666666666666665554 344555555555556666666666666655555322 234455555555
Q ss_pred HHhcCChhHHHHHHHHHHHh
Q 011226 274 YGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (490)
+...|++++|...++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555443
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.47 E-value=3e-06 Score=64.14 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS---- 409 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~---- 409 (490)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..++++.+.... ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----NREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----STTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc----cchhHHHH
Confidence 3566778888899999999999999998864 236777888888999999999999999999887510 0122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 410 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 410 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
...+..+..++...|++++|...++++.+..+ +...+..+..+...
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence 77888999999999999999999999999875 66666666665544
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.45 E-value=2.6e-06 Score=63.69 Aligned_cols=96 Identities=15% Similarity=0.061 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHH
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRT 415 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 415 (490)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++.++.. | +...+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHH
Confidence 445556677777777777777777765322 56666677777777777777777777777776 4 3667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 416 FMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 416 l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+..++...|++++|...++++++..|
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777777777777777777665
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=1.3e-05 Score=60.56 Aligned_cols=101 Identities=11% Similarity=0.029 Sum_probs=67.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HH
Q 011226 339 VMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SE 411 (490)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~ 411 (490)
.+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|+..++++.+.. |+ ..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~ 77 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------PTHDKAAG 77 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTSTTHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------CCCcccHH
Confidence 4455666777777777777777764322 22 355566667777777777777777777765 33 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.+..+..++...|++++|...|+++.+..| .+..+..
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 114 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP-GSDAARV 114 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CChHHHH
Confidence 566777777777777777777777777765 4444433
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.44 E-value=8.7e-06 Score=64.66 Aligned_cols=101 Identities=17% Similarity=0.003 Sum_probs=70.6
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..|++...... .+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3445666667777777777777777777775 455677777777777777777777777777766543 3466677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCC
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLAFP 295 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~ 295 (490)
.+|...|++++|...|++..+..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 777777777777777777766543
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=3.5e-06 Score=63.77 Aligned_cols=110 Identities=16% Similarity=0.223 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 011226 301 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEI 374 (490)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 374 (490)
.+..+...+...|++++|...+.......+. +...+..+...+...|++++|...++++.+... .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3444555556666666666666665554433 455566666666666777777776666665321 111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH 419 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 419 (490)
+...+...|++++|.+.|+++.+.. |+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH--------RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--------CCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 6667777777777777777777765 555555444443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.3e-05 Score=75.01 Aligned_cols=169 Identities=11% Similarity=-0.022 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCC-Cch----hHHHHHHHHHhcCChhhHHHHHHHHHh----cCCCC-Chhh
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNT-ANI----SYLNMIQVLVNLKDLPGAEKCFKEWES----GCATY-DIRV 336 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~ 336 (490)
+..+...|...|++++|.+.+..+....... +.. +.+.+...+...|+.+.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777776655431111 111 122223333456777777777776542 22222 2456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-C-
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRR--GAD--P-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-S- 409 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~- 409 (490)
+..+...|...|++++|..+++++... +.. + ....+..++..|...|++++|..++++.......- ..| .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~ 214 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI---YCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---CCCHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---CCchHH
Confidence 777888899999999999999887652 111 1 13467788889999999999999998877652100 012 1
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 410 -SETIRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 410 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
...+..+...+...|++++|...|.++.+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566777778889999999988877765
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=3.4e-05 Score=72.22 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcC----CC-CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGC----AT-YDIRVTNVMIGAYAKEGRLENAEELKERAR 361 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 361 (490)
+..+...+...|++++|..++..+...- .. ....++..++..|...|++++|..+++...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3444455555555555555555443210 00 012244444555555555555555555443
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=1.5e-05 Score=60.90 Aligned_cols=99 Identities=11% Similarity=-0.044 Sum_probs=58.7
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI 271 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 271 (490)
+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...++....... .+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 3455555566666666666666666666654 444555666666666666666666666666655432 2445555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHh
Q 011226 272 TLYGQTGNLSEVYRIWRSLRLA 293 (490)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~ 293 (490)
.++...|++++|...|+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666655543
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.36 E-value=4.7e-06 Score=62.30 Aligned_cols=96 Identities=10% Similarity=-0.037 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 302 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
+..+...+.+.|++++|...|+...+..+. +...|..+..++...|++++|+..|++..+.... +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445556667777777777777777766554 6667777777777777777777777777775332 45566667777777
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 011226 382 NGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 382 ~g~~~~A~~~~~~~~~~~ 399 (490)
.|++++|+..+++.++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777777654
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.33 E-value=1.1e-05 Score=63.93 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 336 VTNVMIGAYAKEGRLENAEELKERARRR--------GA---------DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 336 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
.+......+.+.|++++|...|.+.++. .. +.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555566666666666555542 00 113356777888889999999999999999988
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 011226 399 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV-EVFEPLIRTY 455 (490)
Q Consensus 399 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 455 (490)
.. .+...|..+..++...|++++|...|+++++..| .+. .+...+..+.
T Consensus 93 ~p-------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 93 EE-------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-AAASVVAREMKIVT 142 (162)
T ss_dssp ST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHH
T ss_pred CC-------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 61 3478888999999999999999999999999987 555 4444444333
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.31 E-value=8.1e-06 Score=76.90 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
...+..+...|.+.|++++|...|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555666667777777777777777766322211 4678888889999999999999999999986
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcH
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 463 (490)
. .+...|..+..+|...|++++|...|+++++..| .+..++..+..++...|+..+
T Consensus 348 p-------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 S-------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp T-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred C-------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 1 4588899999999999999999999999999998 788899999999988887433
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.30 E-value=3.2e-05 Score=58.30 Aligned_cols=93 Identities=11% Similarity=-0.017 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESGCATYDI---RVTNVMIGAYAKEGRLENAEELKERARRRGADPN---AKTWEIFSDY 378 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~ 378 (490)
+...+...|++++|...|+.+.+..+. +. ..+..+..++...|++++|...|+.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 444455555666666655555544332 22 34445555566666666666666666554221 1 3445555556
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 011226 379 YLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+...|++++|...|+++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 666666666666666666654
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=8e-05 Score=71.82 Aligned_cols=171 Identities=8% Similarity=-0.094 Sum_probs=134.7
Q ss_pred hhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC----------hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-
Q 011226 280 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD----------LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG- 348 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 348 (490)
.++|++.++.+...++. +...|+.--.++...|+ ++++...++.+.+..++ +..+|+.-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 45778888888776553 33445544445555555 78899999998888777 8888888777788888
Q ss_pred -ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhc---
Q 011226 349 -RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--- 423 (490)
Q Consensus 349 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--- 423 (490)
+++++++.++++.+.+.. +...|+.-...+.+.| .++++++.++++++... -+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-------~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-------SNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-------CCHHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-------CCccHHHHHHHHHHhhccc
Confidence 669999999999987655 7788888777788888 88999999999988862 4678888777776663
Q ss_pred -----------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 424 -----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 424 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
+.++++.+.+++++...| .|..+|+.+...+.+.++.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCc
Confidence 557999999999999999 8999999999888887773
No 179
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=1.8e-05 Score=61.32 Aligned_cols=109 Identities=14% Similarity=0.071 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
+...+..+...+...|++++|++.|++..+.. |+ ...+..+..++...|++++|...++++.+..+ .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-G 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-c
Confidence 56678888889999999999999999999887 66 67888899999999999999999999999988 7
Q ss_pred CHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHH-HHHHHH
Q 011226 444 GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA-SKKLLE 485 (490)
Q Consensus 444 ~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~-~~~~l~ 485 (490)
+...+..+..+|...|+..+++....+...+.|+.. ....+.
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 899999999999999997776655555555566644 344443
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.26 E-value=4.5e-06 Score=61.99 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=57.5
Q ss_pred cCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcC
Q 011226 347 EGRLENAEELKERARRRGA--DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK 424 (490)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 424 (490)
.|++++|+..|++..+.+. +.+...+..+...|...|++++|+..|+++++... -+...+..+..++...|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-------NHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CchHHHHHHHHHHHHcC
Confidence 4667777777777776431 11234566666677777777777777777777751 23667777777777777
Q ss_pred ChHHHHHHHHHHHHcCC
Q 011226 425 DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~ 441 (490)
++++|...+++++...|
T Consensus 76 ~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 76 RYEQGVELLLKIIAETS 92 (117)
T ss_dssp CHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 77777777777777665
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=1.1e-05 Score=63.86 Aligned_cols=110 Identities=12% Similarity=0.011 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCCC----CcC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG------RGDGGK----WVP-SSETIRTFMRHFEQEKDVDGAEGFLEILK 437 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 437 (490)
...+......+.+.|++++|+..|.+.+..- ..|... ..| +...|..+..+|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456667788999999999999999998871 000000 012 24678889999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHH
Q 011226 438 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEA 479 (490)
Q Consensus 438 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~ 479 (490)
+.+| .+..+|..+..+|...|++.+++...-+...+.|+..
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9998 8999999999999999998888877777777788866
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=6.2e-06 Score=78.02 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=59.6
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
.+.+.|++++|.+.+++..+..+. +...|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 344556666666666665554433 4555555556666666666666666665554221 34455555555556666666
Q ss_pred HHHHHHHHHhcCCCCCCCCcCC-HHHHHHHHHH--HHhcCChHHHHHHHH
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRH--FEQEKDVDGAEGFLE 434 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 434 (490)
|++.++++++.. |+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655554 21 2233333333 555555555555555
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.22 E-value=1.8e-05 Score=74.93 Aligned_cols=118 Identities=11% Similarity=-0.065 Sum_probs=58.7
Q ss_pred HHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHH
Q 011226 167 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE 246 (490)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (490)
.+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++++|+..+++..+. .+.+...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3445555556666665555542 113455555555555666666666666655554 3445555555555555566666
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 011226 247 KAERALKELENRNAHRDLSAYQFLITL--YGQTGNLSEVYRIWR 288 (490)
Q Consensus 247 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 288 (490)
+|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666555554322 122233333333 455555555555555
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.20 E-value=1.2e-05 Score=61.97 Aligned_cols=101 Identities=8% Similarity=-0.061 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRRGADP------NA-----KTWEIFSDYYLRNGDMKLAVDCLEKAIDT------- 398 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 398 (490)
+......+...|++++|...|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3445556666777777777777777642220 22 37888888999999999999999999987
Q ss_pred CCCCCCCCcCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 011226 399 GRGDGGKWVPS-SETI----RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE 446 (490)
Q Consensus 399 ~~~~~~~~~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 446 (490)
. |+ ...| .....++...|++++|+..|++.++..| .|..
T Consensus 94 ~--------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p-~d~~ 137 (159)
T 2hr2_A 94 N--------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE-ERKG 137 (159)
T ss_dssp T--------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HCCS
T ss_pred C--------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHH
Confidence 6 76 6778 8999999999999999999999999766 4433
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=1.7e-05 Score=62.43 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555444331110 01 1234444444555555555555554443
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=1.6e-05 Score=62.62 Aligned_cols=135 Identities=14% Similarity=0.086 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-CC----chhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC----C-C
Q 011226 264 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT----Y-D 333 (490)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~ 333 (490)
..++..+...+...|++++|...+++....... ++ ...+..+...+...|++++|...++........ + .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777888899999999999999987754221 11 136778888999999999999999987543211 1 1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011226 334 IRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 398 (490)
Q Consensus 334 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 398 (490)
...+..+...+...|++++|...+++..+... ..+ ...+..+...+...|++++|.+.+++..+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677888899999999999999999875310 111 245677788889999999999999998765
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=1.4e-05 Score=72.84 Aligned_cols=117 Identities=13% Similarity=0.053 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--------------CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011226 337 TNVMIGAYAKEGRLENAEELKERARRR--------------GAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG 401 (490)
Q Consensus 337 ~~~li~~~~~~~~~~~a~~~~~~~~~~--------------~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 401 (490)
+..+...+.+.|++++|...|++.++. ... .+...|..+..+|.+.|++++|++.++++++...
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 444555566666666666666665541 011 1345677788888899999999999999998761
Q ss_pred CCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCC
Q 011226 402 DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 461 (490)
Q Consensus 402 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 461 (490)
.+...+..+..+|...|++++|...|+++++..| .+..++..+..++...++.
T Consensus 305 ------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 305 ------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred ------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence 3578888888999999999999999999999888 7888888888888776653
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=1.3e-05 Score=59.41 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=61.1
Q ss_pred cCCCCcHHHHHHHHHHCCC--CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011226 171 TGHPEKIPAIIQEMKASSI--MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 248 (490)
.|++++|+..|++..+.+. +-+...+..+..++...|++++|+..|++..+. .|.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 5677788888887776531 223456667777788888888888888888876 566677777788888888888888
Q ss_pred HHHHHHHHHcc
Q 011226 249 ERALKELENRN 259 (490)
Q Consensus 249 ~~~~~~~~~~~ 259 (490)
...+++.....
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888776643
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=5.4e-05 Score=71.26 Aligned_cols=121 Identities=8% Similarity=0.013 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRD--------------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (490)
.+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.....+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444455555555555555555555544221110 234444444555555555555555555444332
Q ss_pred CCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 297 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
+...|..+..+|...|++++|...|+...+..+. +...+..+..++...++.+++
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555554444332 334444444444444444433
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=1.5e-05 Score=61.48 Aligned_cols=104 Identities=10% Similarity=-0.052 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCCCCcCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG-DGGKWVPSS-----ETIRTFMRHFEQEKDVDGAEGFLEILKKA----- 439 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 439 (490)
.+......+.+.|++++|+..|++.++.... |... ..+. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4455666788999999999999999998721 0000 0022 38999999999999999999999999999
Q ss_pred --CCCCCHHhH----HHHHHHHHhcCCCcHHHHHHHhhCCCCC
Q 011226 440 --VDDLGVEVF----EPLIRTYAAAGRTSPVMLRRLKMEKVEV 476 (490)
Q Consensus 440 --~~~~~~~~~----~~l~~~~~~~g~~~~~~~~~m~~~~~~p 476 (490)
+| .+...| .....++...|++.+++...-+...+.|
T Consensus 92 e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 92 ELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp CTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88 788999 9999999999998888765554443333
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=6.8e-05 Score=52.28 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 369 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
...+..+...+...|++++|+..+++.++... .+...+..+..++...|++++|...++++.+..| .+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~ 80 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHH
Confidence 45677788889999999999999999998861 3578889999999999999999999999999988 788999
Q ss_pred HHHHHHHHhcC
Q 011226 449 EPLIRTYAAAG 459 (490)
Q Consensus 449 ~~l~~~~~~~g 459 (490)
..+..++...|
T Consensus 81 ~~l~~~~~~~g 91 (91)
T 1na3_A 81 QNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99988887654
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=5.4e-05 Score=68.93 Aligned_cols=138 Identities=9% Similarity=-0.010 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 011226 265 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 344 (490)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 344 (490)
..+..+...+.+.|++++|+..|++..+.... . ..... ........+ .+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--~----------~~~~~-------~~~~~~~~~-~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--S----------RAAAE-------DADGAKLQP-VALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--H----------HHHSC-------HHHHGGGHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--C----------ccccC-------hHHHHHHHH-HHHHHHHHHHHHH
Confidence 45666777777778888888777776542100 0 00000 011111111 1456677778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHHHHHHHHHHHHhc
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQE 423 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 423 (490)
.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|+++++.. | +...+..+..++...
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKI 354 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHH
Confidence 888888888888888887532 256677777788888888888888888888876 4 466666666677766
Q ss_pred CChHHHHH
Q 011226 424 KDVDGAEG 431 (490)
Q Consensus 424 g~~~~a~~ 431 (490)
++.+++.+
T Consensus 355 ~~~~~a~k 362 (370)
T 1ihg_A 355 KAQKDKEK 362 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.01 E-value=1.9e-05 Score=71.12 Aligned_cols=98 Identities=7% Similarity=-0.052 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 011226 371 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP 450 (490)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 450 (490)
.|..+..+|.+.|++++|+..+++.++.. ..+...|..+..+|...|++++|...|+++++..| .+..++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~ 303 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRE 303 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHH
Confidence 77888889999999999999999999986 13588999999999999999999999999999888 67788887
Q ss_pred HHHHHHhcCC---CcHHHHHHHhhCCCCCCH
Q 011226 451 LIRTYAAAGR---TSPVMLRRLKMEKVEVSE 478 (490)
Q Consensus 451 l~~~~~~~g~---~~~~~~~~m~~~~~~p~~ 478 (490)
|......... .+..++..|. +..|+.
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l--~~~p~~ 332 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIF--KGKDEG 332 (338)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCCCC
Confidence 7776544433 3334454443 334543
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.99 E-value=4.6e-05 Score=55.56 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG--- 444 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 444 (490)
+...+..+...+...|++++|++.|++.++... .+...+..+..++...|++++|...++++++..| .+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHH
Confidence 455677778888889999999999999988861 3578888888899999999999999999998887 55
Q ss_pred ---HHhHHHHHHHHHhcCCCcH
Q 011226 445 ---VEVFEPLIRTYAAAGRTSP 463 (490)
Q Consensus 445 ---~~~~~~l~~~~~~~g~~~~ 463 (490)
..++..+..++...|+...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHhh
Confidence 6677777777777776433
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.94 E-value=7.7e-05 Score=54.92 Aligned_cols=81 Identities=19% Similarity=0.119 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHH
Q 011226 352 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG 431 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 431 (490)
.|...|++..+... .+...+..+...+...|++++|+..|++.++... .+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-------TYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555422 2445555666666666666666666666666541 235566666666666666666666
Q ss_pred HHHHHHHcC
Q 011226 432 FLEILKKAV 440 (490)
Q Consensus 432 ~~~~~~~~~ 440 (490)
.|+++.+..
T Consensus 75 ~~~~al~~~ 83 (115)
T 2kat_A 75 AWESGLAAA 83 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666544
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.001 Score=64.12 Aligned_cols=173 Identities=8% Similarity=-0.070 Sum_probs=118.7
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL----------FEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
.++|++.++.+... .|.+..+|+.--.++...|+ ++++++.++.+.+... -+..+|+.-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcc
Confidence 34667777777775 56666667666666666655 7777777777777554 35666766666666777
Q ss_pred --ChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC-ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhc--------
Q 011226 279 --NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-------- 347 (490)
Q Consensus 279 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 347 (490)
+++++++.++++.+..+. +...|+.-...+.+.| .++++.+.+..+.+..+. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 557788888877776654 5566666666666667 677777777777776665 667777666665552
Q ss_pred ------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011226 348 ------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 348 ------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
+.++++.+.++.+....+. |...|...-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999998886443 66788877777777666433
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=3.1e-05 Score=69.67 Aligned_cols=149 Identities=11% Similarity=0.011 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHH
Q 011226 229 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV 308 (490)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (490)
...+..+...+.+.|++++|...|++..... |+... +...++..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556667777778888888888888876632 33221 122233333322211 1366778888
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhcCCHH
Q 011226 309 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDY-YLRNGDMK 386 (490)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 386 (490)
+.+.|++++|...++...+..+. +...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999888877654 6778888888899999999999999888764 333 3333333333 23445667
Q ss_pred HHHHHHHHHHhcC
Q 011226 387 LAVDCLEKAIDTG 399 (490)
Q Consensus 387 ~A~~~~~~~~~~~ 399 (490)
++...|..+....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7778888877665
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.85 E-value=6.6e-05 Score=57.79 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=67.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCCCCcCC-HHHHH
Q 011226 346 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD----------MKLAVDCLEKAIDTGRGDGGKWVPS-SETIR 414 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~ 414 (490)
+.+.+++|.+.++...+.... +...|..+..++...++ +++|+..|++.++.. |+ ...|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--------P~~~~A~~ 84 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--------PKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------cCcHHHHH
Confidence 445567777777777765332 55666666666666554 569999999999997 65 78999
Q ss_pred HHHHHHHhcC-----------ChHHHHHHHHHHHHcCC
Q 011226 415 TFMRHFEQEK-----------DVDGAEGFLEILKKAVD 441 (490)
Q Consensus 415 ~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~ 441 (490)
.+..+|.+.| ++++|...|+++++.+|
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 9999998875 89999999999999997
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=2.4e-05 Score=60.25 Aligned_cols=102 Identities=6% Similarity=-0.149 Sum_probs=86.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHcCCCCCHHhHH
Q 011226 380 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV----------DGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 380 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
.+.+.+++|++.+++.++... .+...|..+..++...+++ ++|+..|+++++.+| .+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P-------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP-------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHH
Confidence 355678999999999999971 3588898899999888765 599999999999999 8999999
Q ss_pred HHHHHHHhcC-----------CCcHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 450 PLIRTYAAAG-----------RTSPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 450 ~l~~~~~~~g-----------~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
.+..+|...| ++.+++....++..+.|+...+..-.+.+.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999875 677888888888899999988877666654
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00085 Score=51.13 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=71.6
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011226 314 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAV 389 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 389 (490)
+.++|.+.|+...+.+.. + .. |...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 456666666666665522 2 22 5555556666666777777776653 55566666666665 66777777
Q ss_pred HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 011226 390 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 441 (490)
++|++..+.| ++..+..|...|.. .+++++|...|++..+.|.
T Consensus 82 ~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777777664 34556666666666 6777777777777777664
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.80 E-value=0.00034 Score=51.33 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=57.4
Q ss_pred CcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 175 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 175 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
+.|+..|++..+.. +.+...+..+..++...|++++|+..|++..+. .+.+...|..+..+|...|++++|...|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45667777776643 235566777777777888888888888887776 456667777777788888888888887777
Q ss_pred HHH
Q 011226 255 LEN 257 (490)
Q Consensus 255 ~~~ 257 (490)
...
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00015 Score=52.72 Aligned_cols=93 Identities=9% Similarity=-0.000 Sum_probs=66.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC---
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--- 409 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~--- 409 (490)
+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|++.+++.++.. |+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--------STAEH 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--------SSTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCccH
Confidence 445667777788888888888888888887532 256677777788888888888888888888776 43
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHH
Q 011226 410 ----SETIRTFMRHFEQEKDVDGAEGFLE 434 (490)
Q Consensus 410 ----~~~~~~l~~~~~~~g~~~~a~~~~~ 434 (490)
...+..+..++...|+.+.|...++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 74 VAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4555666666666666666554443
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.76 E-value=0.0006 Score=52.00 Aligned_cols=111 Identities=12% Similarity=-0.051 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHH----cCChhHH
Q 011226 137 LMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGA 212 (490)
Q Consensus 137 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a 212 (490)
+++++|++.|++..+.|. ++ .. |...|...+.+++|.++|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666666666666552 22 22 4444444445555666666665554 44555555555555 5566666
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcc
Q 011226 213 ERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRN 259 (490)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 259 (490)
...|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665543 34445555555555 556666666666655543
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00037 Score=65.55 Aligned_cols=127 Identities=12% Similarity=0.003 Sum_probs=92.3
Q ss_pred HHHhcCChhhHHHHHHHHHhc-----CCC-C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCC-CC-HHHHH
Q 011226 308 VLVNLKDLPGAEKCFKEWESG-----CAT-Y-DIRVTNVMIGAYAKEGRLENAEELKERARR-----RGAD-PN-AKTWE 373 (490)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~-p~-~~~~~ 373 (490)
.+...|++++|..++++..+. |.. | ...+++.|...|...|++++|..++++.++ .|.. |+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455678888888888776431 211 1 235678888999999999999999988764 2221 22 24678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCCCcCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 374 IFSDYYLRNGDMKLAVDCLEKAIDT-----GRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
.+...|...|++++|+.++++.++. |. -.|+ ..+...+..++...+.+++|+.++.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~-----~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGP-----SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999988765 41 1132 344566667788899999999999998763
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.66 E-value=0.00084 Score=46.48 Aligned_cols=78 Identities=14% Similarity=0.059 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL 273 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (490)
..+..+...+...|++++|...+++..+. .+.+...+..+..++.+.|++++|...+++...... .+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 34445555556666666666666666554 344555555566666666666666666665555322 233344444433
Q ss_pred H
Q 011226 274 Y 274 (490)
Q Consensus 274 ~ 274 (490)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.62 E-value=0.00036 Score=49.75 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHH
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-LGVE 446 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 446 (490)
+...+..+...|...|++++|+..|+++++... .+...|..+..+|...|++++|...+++.++..+. ++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 566788888899999999999999999999871 34778889999999999999999999999876432 4666
Q ss_pred hHHHHHHHHHhcCC
Q 011226 447 VFEPLIRTYAAAGR 460 (490)
Q Consensus 447 ~~~~l~~~~~~~g~ 460 (490)
....+...+.+.+.
T Consensus 79 ~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 79 DLSELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccc
Confidence 66666666655544
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.59 E-value=0.00014 Score=68.43 Aligned_cols=99 Identities=8% Similarity=-0.047 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---ccCCCC-
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKR-----DGRVAAD-WTTFSNLASIYVEAGLFEKAERALKELEN---RNAHRD- 263 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~- 263 (490)
.+++.|..+|...|++++|..++++... .|...|+ ..+++.|...|...|++++|..++++... .-+.|+
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455566666666666666665555443 1222222 33456666666666666666666665533 111122
Q ss_pred ---HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 264 ---LSAYQFLITLYGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 264 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (490)
..+.+.+-.++...+.+.+|..+|..+++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334455555566666666666666654
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.48 E-value=0.00098 Score=47.41 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=42.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011226 192 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
+...+..+..++...|++++|+..|++..+. .+.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666666677777777777777777665 455566666677777777777777777666554
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.34 E-value=0.0065 Score=53.89 Aligned_cols=67 Identities=12% Similarity=-0.025 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 367 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 367 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
.+...|..+...+...|++++|+..+++++..+ |+...|..+...+.-.|++++|.+.++++...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 355566655555555677777777777777765 6666666666667777777777777777777664
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.32 E-value=0.0091 Score=52.99 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=61.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCH
Q 011226 331 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS 410 (490)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~ 410 (490)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.... |..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--------P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--------PGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCc
Confidence 3477788887777777899999999999999874 787777777888889999999999999999987 777
Q ss_pred HHHH
Q 011226 411 ETIR 414 (490)
Q Consensus 411 ~~~~ 414 (490)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 7654
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.28 E-value=0.0029 Score=44.60 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhH
Q 011226 375 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSE-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF 448 (490)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 448 (490)
....+...|++++|+..++++++.. | +.. .+..+..++...|++++|...|+++++..| .+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHH
Confidence 3456788999999999999999987 5 467 889999999999999999999999999998 666665
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.16 E-value=0.0016 Score=46.03 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNLASIYVEAGLFEKAERALKELENRN 259 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 259 (490)
....+...|++++|...|+++.+. .+.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344566677777777777777665 455556 66667777777777777777777766643
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.07 E-value=0.0064 Score=43.43 Aligned_cols=83 Identities=12% Similarity=-0.043 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 368 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+...+..+...+.+.|++..|...|+.+.+....+...-.+...++..+..++.+.|+++.|...++++.+..| .+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P-~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHH
Confidence 45556677788888899999999988887752110000124578899999999999999999999999999998 66666
Q ss_pred HHHH
Q 011226 448 FEPL 451 (490)
Q Consensus 448 ~~~l 451 (490)
.+.+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5544
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.98 E-value=0.014 Score=44.44 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcC
Q 011226 350 LENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEK 424 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g 424 (490)
...+.+-|.+..+.|. ++..+...+..++++.+ +.++++.++++..+... | +...+..+.-+|.+.|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-------p~~~rd~lY~LAv~~~kl~ 85 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-------KEEQRDYVFYLAVGNYRLK 85 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-------HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-------ccchHHHHHHHHHHHHHcc
Confidence 3455666666666554 57777777777888877 55688888888887641 3 3556666777788888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 425 DVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 425 ~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
++++|.+.++.+++..| .|..+..
T Consensus 86 ~Y~~A~~y~~~lL~ieP-~n~QA~~ 109 (152)
T 1pc2_A 86 EYEKALKYVRGLLQTEP-QNNQAKE 109 (152)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 88888888888888887 5555544
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.92 E-value=0.014 Score=40.51 Aligned_cols=67 Identities=10% Similarity=-0.046 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 011226 368 NAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 368 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 441 (490)
+...+..+..++...++ .++|..++++.++... -++.....+...+.+.|++++|...|+++++..|
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-------~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-------YNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 44555555555543333 5677777777776651 2356666666666777777777777777776665
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.0039 Score=57.64 Aligned_cols=98 Identities=10% Similarity=-0.079 Sum_probs=73.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc--C-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHH
Q 011226 341 IGAYAKEGRLENAEELKERARRR--G-ADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SET 412 (490)
Q Consensus 341 i~~~~~~~~~~~a~~~~~~~~~~--~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~ 412 (490)
+..+...|++++|..++++..+. . +.|+ ..+++.+...|...|++++|+.+++++++....--+...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999999998853 1 2222 24678888999999999999999998876510000002243 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 438 (490)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999876
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.89 E-value=0.0039 Score=57.59 Aligned_cols=93 Identities=11% Similarity=-0.054 Sum_probs=69.8
Q ss_pred hcCChhHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCC-HHHHHHHH
Q 011226 346 KEGRLENAEELKERARRR---GADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM 417 (490)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~ 417 (490)
..|++++|..++++.++. -+.|+ ..+++.+..+|...|++++|+.++++.++....--+...|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999888752 12233 25788899999999999999999999876510000002244 56789999
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 011226 418 RHFEQEKDVDGAEGFLEILKK 438 (490)
Q Consensus 418 ~~~~~~g~~~~a~~~~~~~~~ 438 (490)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999876
No 218
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.89 E-value=0.00012 Score=66.30 Aligned_cols=215 Identities=11% Similarity=0.027 Sum_probs=111.3
Q ss_pred CHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 011226 54 FKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCY 133 (490)
Q Consensus 54 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 133 (490)
.+..|..+.++..+.++..+|++.|- +. -|+..|..++.+..+.|.+++-...+....+...++.+=+.|+.+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34555566666666666666655442 11 2444566667777777777777777666666444455556667777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCC--------------------CCCCH
Q 011226 134 CKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--------------------IMPDS 193 (490)
Q Consensus 134 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~p~~ 193 (490)
++.++..+-.+++. | ||..-...+.+-|...|.++.|.-+|..+.... ---++
T Consensus 127 Ak~~rL~elEefl~-----~--~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-----G--PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-----C--CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-----C--CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77666544333221 1 455455555555555555555544443321100 01134
Q ss_pred hhHHHHHHHHHHc------------------------------CChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcC
Q 011226 194 YTYNVWMRALAAV------------------------------NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG 243 (490)
Q Consensus 194 ~~~~~l~~~~~~~------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 243 (490)
.||..+-.+|... |.+++-+.+++..... .......|+-|.-.|++-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-
Confidence 4555555555554 4455555555554432 345556666666666654
Q ss_pred CHHHHHHHHHHHHHc-cCC------CCHHHHHHHHHHHHhcCChhHHH
Q 011226 244 LFEKAERALKELENR-NAH------RDLSAYQFLITLYGQTGNLSEVY 284 (490)
Q Consensus 244 ~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 284 (490)
++++..+.++....+ +++ -....|.-++-.|..-.+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 445544444332211 110 12344666666666666666554
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.025 Score=57.44 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcC
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 137 (490)
+..+++.+.+.|.+++|+++.+. . ..-.......|+++.|.++.+.+. +...|..+...+.+.+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES----AEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcC
Confidence 34555555555666655554421 1 111334455666666666665553 4566666666666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHH
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAI 180 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 180 (490)
+++.|.+.|..+.+ |..+...+...++.+...++
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 76666666666543 33444444444444443333
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.71 E-value=0.014 Score=40.48 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=41.4
Q ss_pred ChhhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGR---LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|+..+..+..++...++ .++|..++++..+.+.. +......+...+.+.|++++|+..|+++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55556666666654433 56777777777765332 44555556666677777777777777777665
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.044 Score=42.78 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=54.7
Q ss_pred HHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCc
Q 011226 97 LDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEK 176 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 176 (490)
++.....|+++.|.++.+.+. +...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 344455566666666655552 455666666666666666666666655443 4444444445555544
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 218 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 218 (490)
..++-+.....| -++....++.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433333332 134444455556666666666533
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.54 E-value=0.066 Score=54.37 Aligned_cols=151 Identities=14% Similarity=0.049 Sum_probs=80.7
Q ss_pred hccCCchHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 011226 66 RDRKLYYPALK-LSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEA 144 (490)
Q Consensus 66 ~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 144 (490)
...+++++|.+ ++.. + ++......++..+.+.|..+.|.++.+.-. .-.......|+++.|.+
T Consensus 610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------~~f~~~l~~~~~~~A~~ 673 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD----------QKFELALKVGQLTLARD 673 (814)
T ss_dssp HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH----------HHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc----------hheehhhhcCCHHHHHH
Confidence 44667777665 4311 1 112223566666677777777776653211 11223455677777777
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 011226 145 LLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR 224 (490)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 224 (490)
+.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+.....|
T Consensus 674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~- 737 (814)
T 3mkq_A 674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG- 737 (814)
T ss_dssp HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 65332 3456777777777777777777777776532 3344444555566555555544444443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 225 VAADWTTFSNLASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 254 (490)
-++.-..+|.+.|++++|.+++.+
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 112223334445555555544433
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.22 Score=38.84 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=97.2
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHH
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKA 142 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 142 (490)
....+.|+++.|.++.+.+ .+...|..+.+.....|+++-|...|..... +..+.-.|.-.|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHH
Confidence 3445789999999998876 3677899999999999999999999999875 56677777888999888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 143 EALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
.++-+.....|- ++.....+...|+++++.++|.+. |--|.. .-.....|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 877777666552 677777788889999999998644 222221 11223356677777777765
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.44 E-value=0.019 Score=53.14 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~ 255 (490)
+++.++..|...|++++|..++++.
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444455555555555544443
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.40 E-value=0.0077 Score=55.62 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=55.1
Q ss_pred cCChhHHHHHHHHHHHC-----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---cCC---CC-HHHHHHHHH
Q 011226 206 VNDISGAERVIEEMKRD-----GRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENR---NAH---RD-LSAYQFLIT 272 (490)
Q Consensus 206 ~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~-~~~~~~l~~ 272 (490)
.|++++|+.++++..+. |...| ...+++.|...|...|++++|..++++...- -.. |+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777888877776552 21122 2355777788888888888888877776541 111 22 355677777
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 011226 273 LYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~ 291 (490)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777654
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.29 E-value=0.1 Score=39.11 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=43.0
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 011226 312 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP 367 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 367 (490)
.+|.++|.++|+.+.+.+-.. ..+|....+.-.++|++..|.+++...+..+..|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 478888898888887654443 6777777777788899999999999988876664
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.25 E-value=0.22 Score=36.56 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=77.0
Q ss_pred CCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHH
Q 011226 104 QGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQE 183 (490)
Q Consensus 104 g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 183 (490)
|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-.. -|.. ..|+...+...+-.
T Consensus 21 G~v~qGveii~k~~~s-sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C~~~ 86 (172)
T 1wy6_A 21 GYIDEGVKIVLEITKS-STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVECGVI 86 (172)
T ss_dssp TCHHHHHHHHHHHHHH-SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCC-CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHHHHH
Confidence 5555555555544431 13334555554444555555555555554332 1211 12222222222221
Q ss_pred HHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC
Q 011226 184 MKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH 261 (490)
Q Consensus 184 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 261 (490)
+ | .+...+...+......|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.|.+
T Consensus 87 ~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 87 N---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp T---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred h---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 1 1 13444555667777778888777777776553 6777777778888888888888888888888777763
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.25 E-value=0.091 Score=38.33 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=68.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHH
Q 011226 345 AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL---AVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRH 419 (490)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~ 419 (490)
.....+..+.+-|......|. |+..+-..+..++++..+... ++.++++..+.+. | .......|.-+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-------p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-------KEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-------cchHHHHHHHHHHH
Confidence 333445566666666666554 677777777888888877665 8888888887651 3 34555667778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 011226 420 FEQEKDVDGAEGFLEILKKAVDDLGVEVFE 449 (490)
Q Consensus 420 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 449 (490)
+.+.|+++.|.+.++.+++..| .|..+..
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~eP-~n~QA~~ 112 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQTEP-QNNQAKE 112 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 8999999999999999999988 6655543
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.21 E-value=0.1 Score=39.17 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=79.4
Q ss_pred ChhhHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRL------ENAEELKERARRRGADPNAK-TWEIFSD------YYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
|..+|-..+...-+.|+. +..+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555666666666666666 6777778777764 444431 1111111 1234478999999999998764
Q ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 400 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 400 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
. ++ ..+|......-.+.|+...|.+++.+.+..++ .+.......+.-+-.
T Consensus 91 K----kF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 91 K----KF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALRNLNL 140 (161)
T ss_dssp T----TB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHHHHHT
T ss_pred H----HH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHHhhhc
Confidence 2 14 78888888888899999999999999999998 556666666655543
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.17 E-value=0.047 Score=46.43 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHH
Q 011226 350 LENAEELKERARRRGADPN---AKTWEIFSDYYLR-----NGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRH 419 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~ 419 (490)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.. | +..++....+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~v~YA~~ 248 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHHITYADA 248 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHHHHHHHH
Confidence 45677788888875 455 4578888888888 499999999999999998 6 37888888888
Q ss_pred HHhc-CChHHHHHHHHHHHHcCCC--CCHHhHHHHH
Q 011226 420 FEQE-KDVDGAEGFLEILKKAVDD--LGVEVFEPLI 452 (490)
Q Consensus 420 ~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 452 (490)
++.. |+.+++.+.+++.+...+. |+....+.+.
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 8885 9999999999999998886 6655555443
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.16 E-value=0.046 Score=41.51 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011226 318 AEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCL 392 (490)
Q Consensus 318 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (490)
+.+-|.+....+. ++..+...+.-++++.+ ++++++.+|+...+.+ .| +...+-.+.-++.+.|++++|.+++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444333 35555555555666655 4446666666666543 12 2233344445556666666666666
Q ss_pred HHHHhcC
Q 011226 393 EKAIDTG 399 (490)
Q Consensus 393 ~~~~~~~ 399 (490)
+.+++..
T Consensus 95 ~~lL~ie 101 (152)
T 1pc2_A 95 RGLLQTE 101 (152)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 6666655
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.15 E-value=0.092 Score=44.69 Aligned_cols=89 Identities=17% Similarity=0.089 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhc-CC
Q 011226 209 ISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEA-----GLFEKAERALKELENRNAHRDLSAYQFLITLYGQT-GN 279 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 279 (490)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++....+..-+..++....+.++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 45677777777774 344 55777888888773 88888888888887755433466777777777774 88
Q ss_pred hhHHHHHHHHHHHhCCC--CCch
Q 011226 280 LSEVYRIWRSLRLAFPN--TANI 300 (490)
Q Consensus 280 ~~~a~~~~~~~~~~~~~--~~~~ 300 (490)
.+++.+.+++.....+. |+..
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHHHcCCCCCCCChh
Confidence 88888888888776665 5443
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.95 E-value=0.11 Score=36.78 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=41.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRG------ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+..-+..|...+...|+++.|...|+...+.- -.+....+..+..++.+.|+++.|+.+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 33444556666666667777766666665421 11234556666667777777777777777777665
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.80 E-value=0.83 Score=33.57 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 335 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 335 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
......+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444455555556666666665554331 34455555555566666666666666666666555
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.80 E-value=3.9 Score=41.34 Aligned_cols=314 Identities=8% Similarity=-0.042 Sum_probs=169.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH--HHHHHHHHhcCCCCcHHHHHHHHHHCCC--C-----CCHhhHHHHH
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNLGFSSMPF--NSLMTLYAKTGHPEKIPAIIQEMKASSI--M-----PDSYTYNVWM 200 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----p~~~~~~~l~ 200 (490)
--+....|+.++++.++......+-..+..+- ..+.-+.+..|..+++..++.......- . +....-.++.
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 34567788988888888765542101122222 2333445566666678887776654321 0 1111112222
Q ss_pred HHHHHcCC-hhHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH--HH
Q 011226 201 RALAAVND-ISGAERVIEEMKRDGRVAADWT--TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL--YG 275 (490)
Q Consensus 201 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 275 (490)
-+..-.|. -+++...+..+.... .+... .-.++...+.-.|+.+....++..+.+. .+......+.-+ +.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll 535 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhh
Confidence 22222332 245566666665542 11111 1223444455678877777887776652 233333333333 44
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhH--HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNTANISY--LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
..|+.+.+..+.+.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHH
Confidence 678999888888887753 22222211 234456778889888888888887642 22344333444455567887878
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH--hcCChH---
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDM-KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE--QEKDVD--- 427 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~--- 427 (490)
..+++.+.+.+ .|....-..+.-+....|.. .++++.+..+... ++..+-...+.++. -.|..+
T Consensus 614 ~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---------~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 614 PRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---------PVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp HHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---------SSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---------CCHHHHHHHHHHHHHHhcCCccccc
Confidence 88887666542 34444334444455555554 6788888888754 55544433333333 333222
Q ss_pred -HHHHHHHH---HHHc-CCCCCHHhHHHHHHHHHhcCC
Q 011226 428 -GAEGFLEI---LKKA-VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 428 -~a~~~~~~---~~~~-~~~~~~~~~~~l~~~~~~~g~ 460 (490)
+...++++ .... ...++...-..+..+....|.
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 23333333 3322 222556777778888877776
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.41 E-value=4.9 Score=40.71 Aligned_cols=265 Identities=14% Similarity=0.037 Sum_probs=127.5
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHccC-------CCCHHHHHHHHHHH
Q 011226 204 AAVNDISGAERVIEEMKRDGRVAADWT--TFSNLASIYVEAGLFEKAERALKELENRNA-------HRDLSAYQFLITLY 274 (490)
Q Consensus 204 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 274 (490)
...|+.++++.++......+ ...+.. .=..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~-~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGS-RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTS-CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhcccc-CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34455566655554443311 012222 223344445556666677777766554321 01111112222222
Q ss_pred HhcCC-hhHHHHHHHHHHHhCCCCCchhHH--HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 011226 275 GQTGN-LSEVYRIWRSLRLAFPNTANISYL--NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE 351 (490)
Q Consensus 275 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 351 (490)
+-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.... +..-...+.-++...|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHhhhCCChH
Confidence 22232 2455566655554221 1111112 2333445667777777777776653211 2222233333445678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHH
Q 011226 352 NAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 429 (490)
Q Consensus 352 ~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 429 (490)
.+..+.+.+... ..|....-. .+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+
T Consensus 542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-------~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-------NDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-------cHHHHHHHHHHHHhhccCCHHHH
Confidence 888888887763 122222111 23345667788776666888877652 12233333333345556777767
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCCCCCHHH
Q 011226 430 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS 480 (490)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~ 480 (490)
.++++.+.+.+- |.+.--..+.-+....|.....+.+.+...--.+|..+
T Consensus 614 ~rlv~~L~~~~d-~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 614 PRIVQLLSKSHN-AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HHHTTTGGGCSC-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 777765555443 55555555555555556644433333333323344443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.28 Score=48.31 Aligned_cols=49 Identities=12% Similarity=0.031 Sum_probs=44.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHH
Q 011226 417 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML 466 (490)
Q Consensus 417 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 466 (490)
.+.|...|+++-|+.+-+++...-| .+..+|..|..+|...|++..|++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHH
Confidence 4567789999999999999999999 999999999999999999877774
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.95 E-value=0.00045 Score=62.62 Aligned_cols=245 Identities=13% Similarity=0.067 Sum_probs=160.5
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 011226 90 VSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYA 169 (490)
Q Consensus 90 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (490)
+..|..+..+..+.+.+.+|++-|-+.. |+..|..+|....+.|.+++-++.+...++.. .++..=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 3457778888888888887776664443 56678888999999999999888887666543 45566678999999
Q ss_pred hcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCC-------------------CCCCCHH
Q 011226 170 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG-------------------RVAADWT 230 (490)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~ 230 (490)
+.++..+..+++. .||..-...+..-|...|.++.|.-+|..+.... +-..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9998877665542 3666666777888888888888777766543321 1244666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV 310 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (490)
||..+-.+|...+.+.-|.-.--.+.- .+| -...++..|-..|-+++.+.+++.-... -......|+.|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 788888888888877766554433332 122 2334566677788888888887776532 2345566777777776
Q ss_pred hcCChhhHHHHHHHHHhc-CCC------CChhhHHHHHHHHHhcCChhHHH
Q 011226 311 NLKDLPGAEKCFKEWESG-CAT------YDIRVTNVMIGAYAKEGRLENAE 354 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~~~~~~a~ 354 (490)
+- ++++..+.++..-+. +++ -....|..++-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 64 444444444332111 110 03456777777777777777654
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.92 E-value=3.9 Score=43.18 Aligned_cols=210 Identities=13% Similarity=0.004 Sum_probs=102.3
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 95 IHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 95 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
.++..+...+..+.+.++...... +...--.+..++...|++++|.+.|++... |+..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~------------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF------------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-------------
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-------------
Confidence 345556666777777666655544 444444455667777888888777765422 111111000
Q ss_pred CcHHHHHHHHHHCC--CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 011226 175 EKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKA 248 (490)
Q Consensus 175 ~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 248 (490)
. ...-+..+.... ...-..-|..++..+.+.+.++.+.++-...++.. .+.+. ..|..+.+.+...|++++|
T Consensus 880 ~-~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 880 A-VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp S-SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred h-hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 0 000011111110 01112335556666666677766666666555542 11111 1355666667777777777
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHH-Hh-CCCCCchhHHHHHHHHHhcCC
Q 011226 249 ERALKELENRNAHRDLSAYQFLITLYGQTGN------------LSEVYRIWRSLR-LA-FPNTANISYLNMIQVLVNLKD 314 (490)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~ 314 (490)
...+-.+..... -......|+..++..|. .+++.+++..-- .. .+...+.-|..|-.-+...|+
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQN 1035 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCC
Confidence 777666655433 23345555555554443 344444443321 11 112112234444455566677
Q ss_pred hhhHHH-HHHHH
Q 011226 315 LPGAEK-CFKEW 325 (490)
Q Consensus 315 ~~~a~~-~~~~~ 325 (490)
+.+|-. +|+.+
T Consensus 1036 yR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 1036 YRDAAAIIYEKL 1047 (1139)
T ss_dssp TSCHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 766554 34443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.53 E-value=0.29 Score=48.23 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCcchHH--HHHHHHHhcCC-CCcHHHHHHHHHHC------CCCCCH---
Q 011226 127 GSLLNCYCKELM-TEKAEALLEKMKELNLGFSSMPFN--SLMTLYAKTGH-PEKIPAIIQEMKAS------SIMPDS--- 193 (490)
Q Consensus 127 ~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~p~~--- 193 (490)
..++..+...++ ++.|.++|+++...+ |...++- .++..+...++ --+|.+++.+..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444444555 588999999988865 4333332 23332222221 12355555544321 111111
Q ss_pred --------hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 194 --------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 194 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
.....=.+.+...|+++.|+++-++.... .|.+..+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 01122234567789999999999999997 67789999999999999999999999988763
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.50 E-value=0.58 Score=34.11 Aligned_cols=66 Identities=9% Similarity=-0.022 Sum_probs=31.5
Q ss_pred ChhhHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 333 DIRVTNVMIGAYAKEGRLEN---AEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+..+-..+.-++.+..+..+ ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.++++.+++..
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 44444444444555444443 555555544432 11 11222334445556666666666666666654
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.43 E-value=0.37 Score=43.78 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHH--HHH-----HhhCCCCCCHHHHHHH
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM--LRR-----LKMEKVEVSEASKKLL 484 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~--~~~-----m~~~~~~p~~~~~~~l 484 (490)
....++..+...|++++|...++.+....| .+...|..|+.+|.+.|+.++++ ++. ..+.|+.|.+.+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345567788899999999999999999999 89999999999999999965554 222 2345999999998877
Q ss_pred HHh
Q 011226 485 EAI 487 (490)
Q Consensus 485 ~~~ 487 (490)
.++
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.26 E-value=0.6 Score=32.10 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 385 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 385 ~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
.=+..+-++.+.... ..|++.+..+.+++|.+.+++..|.++|+-++.+-. +...+|..+++-+
T Consensus 26 ~~e~rrglN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHHHH
Confidence 335667777777777 779999999999999999999999999999887554 4455677776543
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.14 E-value=5.3 Score=36.91 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHC--CCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHH----CCCCCCC--HH
Q 011226 162 NSLMTLYAKTGHPEKIPAIIQEMKAS--SIMPD---SYTYNVWMRALAAVNDISGAERVIEEMKR----DGRVAAD--WT 230 (490)
Q Consensus 162 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~ 230 (490)
..|...+...|++.+|.+++..+... |.... ...+...++.|...+++..|..+++++.. .. .+|+ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~ 219 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHH
Confidence 34555666666666666666665432 11111 23445556677777777777777766532 11 1121 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011226 231 TFSNLASIYVEAGLFEKAERALKELE 256 (490)
Q Consensus 231 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 256 (490)
.+...+..+...+++.+|.+.|.++.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34555666666777777766666554
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.05 E-value=1.9 Score=31.59 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 011226 365 ADPNAKTWEIFSDYYLRNGDM---KLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKA 439 (490)
Q Consensus 365 ~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 439 (490)
-.|+..+--.+..++++..+. .+++.+++++.+.+ | ....+..|.-++.+.|+++.|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 445666666666777776654 46788888888776 4 3556666777888888888888888888888
Q ss_pred CCCCCHHh
Q 011226 440 VDDLGVEV 447 (490)
Q Consensus 440 ~~~~~~~~ 447 (490)
.| .|..+
T Consensus 108 eP-~N~QA 114 (134)
T 3o48_A 108 ER-NNKQV 114 (134)
T ss_dssp CT-TCHHH
T ss_pred CC-CCHHH
Confidence 87 55444
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.01 E-value=0.5 Score=32.51 Aligned_cols=60 Identities=15% Similarity=0.291 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 237 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
++.+-++.+-...+.|++....+.+++|.+.+|+..|.++|+.+... +.....+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44555566666677788888888888888888888888888877765 4444445655543
No 247
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.94 E-value=5.7 Score=34.40 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHH---
Q 011226 209 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR--- 285 (490)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--- 285 (490)
+++.+.-++.-++.|..-.-...|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHH
Confidence 4444444444444442333334555666667777788887777654221 2233344433333
Q ss_pred -HHHHHHHhCCCCCchhHHHHHHHHHhcCChh-hHHHHHHHHHh----cC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 011226 286 -IWRSLRLAFPNTANISYLNMIQVLVNLKDLP-GAEKCFKEWES----GC--ATYDIRVTNVMIGAYAKEGRLENAEELK 357 (490)
Q Consensus 286 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~ 357 (490)
+.+...+.+..++......++..+......+ .=.++++.+.+ .+ ..-++.....+...|.+.|++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 2333344455555555555555554422211 12233333321 11 2236677888888888988888888776
Q ss_pred H
Q 011226 358 E 358 (490)
Q Consensus 358 ~ 358 (490)
-
T Consensus 158 i 158 (312)
T 2wpv_A 158 M 158 (312)
T ss_dssp H
T ss_pred H
Confidence 4
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.28 E-value=5.1 Score=36.24 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----ccCCCCHHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN-----RNAHRDLSAYQF 269 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 269 (490)
...++.++...|+.+++...++.+... .|.+...+..+|.++.+.|+..+|++.|+...+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 445777888999999999999999887 788888999999999999999999999988754 488888765443
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.03 E-value=1.4 Score=33.86 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 409 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 409 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+.+.-..+..+|.+.|++++|+.+++.+.... .++.+-..|.+.|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHh
Confidence 34555567789999999999999998765443 3455555555443
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.89 E-value=3.9 Score=30.44 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCCCCcC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 011226 366 DPNAKTWEIFSDYYLRNGDM---KLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAV 440 (490)
Q Consensus 366 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 440 (490)
.|+..+--.+..++++..+. .+++.+++++.+.+ | .......|.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--------CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 46666666677777777654 46888888888766 4 24455566678888888888888888888888
Q ss_pred CCCCHHhH
Q 011226 441 DDLGVEVF 448 (490)
Q Consensus 441 ~~~~~~~~ 448 (490)
| .|..+-
T Consensus 108 P-~n~QA~ 114 (144)
T 1y8m_A 108 R-NNKQVG 114 (144)
T ss_dssp C-CCHHHH
T ss_pred C-CcHHHH
Confidence 7 554443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.65 E-value=1.5 Score=32.20 Aligned_cols=86 Identities=12% Similarity=-0.048 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHh-cCCCCHHhHHHHHHHHhccCCc---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHH
Q 011226 38 SVRQQLNQFLKS-KKRVFKWEVGDTLKKLRDRKLY---YPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYF 113 (490)
Q Consensus 38 ~~~~~l~~~~~~-~~~~~~~~~~~ll~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 113 (490)
....+=+.+.+. +..++..+-....-++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|+++.|.+..
T Consensus 22 eL~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 22 QLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333455444 6677888888888888877654 578888888876652112334455666778888888888888
Q ss_pred hhcCCCCCCH
Q 011226 114 VDLPETSKNH 123 (490)
Q Consensus 114 ~~~~~~~~~~ 123 (490)
+.+.+..|+.
T Consensus 102 d~lL~~eP~N 111 (134)
T 3o48_A 102 DTLFEHERNN 111 (134)
T ss_dssp HHHHTTCTTC
T ss_pred HHHHhhCCCC
Confidence 8888855553
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.95 E-value=1.4 Score=32.22 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 011226 177 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS 237 (490)
Q Consensus 177 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (490)
..+-++.+....+.|++....+.+++|.+.+|+..|.++|+-+... ..+...+|..++.
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 4445555556677788888888888888888888888888888776 4444555665553
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.94 E-value=0.9 Score=34.85 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHhccCCchHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHhhCCHHHHHHHHhhc
Q 011226 55 KWEVGDTLKKLRDRKLYYPALKLSENMEKRG-MNKTV-------SDQAIHLDLVAKVQGIDAAENYFVDL 116 (490)
Q Consensus 55 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 116 (490)
.+.+..-++.+...+.++.|+-+.+.+.... ..|+. .++..+.+++...|++..|...|++.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4455666666777777777777666652221 12221 24455567777778888777777764
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.88 E-value=4.5 Score=29.62 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 011226 387 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY 455 (490)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 455 (490)
+..+-++.+.... +.|++.+..+.+++|.+.+++..|.++|+-++.+-. +...+|..+++-+
T Consensus 71 ElrrglN~l~~~D------lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHHHHH
Confidence 4556666666666 779999999999999999999999999999887554 4566677776543
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.81 E-value=12 Score=34.50 Aligned_cols=152 Identities=8% Similarity=0.071 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh--cCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCH--HH
Q 011226 303 LNMIQVLVNLKDLPGAEKCFKEWES--GCATYD---IRVTNVMIGAYAKEGRLENAEELKERARR----RGADPNA--KT 371 (490)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~--~~ 371 (490)
..|...+...|++.+|.+++..+.. .+.... ...+...++.|...+++..|..++..+.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4566777788888888888888653 221111 24566677888888899888888887642 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHh
Q 011226 372 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR----TFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV 447 (490)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 447 (490)
+...+..+...+++.+|.+.|.++.+... ...+...+. .++.+..-.+....-..++........-++...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-----~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~ 295 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDA-----IKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLES 295 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHH
Confidence 45566677788889888888887765420 112222222 222222222222222222333322222267788
Q ss_pred HHHHHHHHHhcC
Q 011226 448 FEPLIRTYAAAG 459 (490)
Q Consensus 448 ~~~l~~~~~~~g 459 (490)
+..|+++|....
T Consensus 296 ~~~L~k~f~~~~ 307 (445)
T 4b4t_P 296 QESLVKLFTTNE 307 (445)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhch
Confidence 888888886643
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.76 E-value=10 Score=39.99 Aligned_cols=178 Identities=11% Similarity=-0.002 Sum_probs=110.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCChhhHHHHHHHHHhc----C----------------
Q 011226 270 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG----C---------------- 329 (490)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------------- 329 (490)
++..+...+..+-+.++..- ...+...-..+..++...|++++|.+.|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555666555543332 1223333345667788899999999988764211 0
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011226 330 --ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG 403 (490)
Q Consensus 330 --~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 403 (490)
...-...|..++..+-+.+.++.+.++-....+....-+. ..|..+..++...|++++|...+-.+....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---- 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---- 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH----
Confidence 0111235677888888999999999888887764222222 257888899999999999999988876654
Q ss_pred CCCcCCHHHHHHHHHHHHhcCChHHH------------HHHHHH-HHHc-CCCCCHHhHHHHHHHHHhcCC
Q 011226 404 GKWVPSSETIRTFMRHFEQEKDVDGA------------EGFLEI-LKKA-VDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 404 ~~~~p~~~~~~~l~~~~~~~g~~~~a------------~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~ 460 (490)
--...+..|+..++..|..+.- .+++.. +... .+...+.-|..|..-+...|+
T Consensus 969 ----~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~d 1035 (1139)
T 4fhn_B 969 ----LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQN 1035 (1139)
T ss_dssp ----SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCC
Confidence 3456677777777776655443 333332 2222 221223446666666677777
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.28 E-value=11 Score=33.04 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011226 379 YLRNGDMKLAVDCLEKAI 396 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~ 396 (490)
|...++...|..+++...
T Consensus 197 yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455555555554444
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.94 E-value=11 Score=34.49 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred chHHHHHHHHHhcCCCCcHHHHHHHHHHC--CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHH-
Q 011226 159 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS--SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL- 235 (490)
Q Consensus 159 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 235 (490)
.++..+...|.+.|++++|.+.|.++... +...-...+-.+++.+...+++..+...+.++...-...+++...+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 46788999999999999999999999765 223334567778899999999999999998876542122333332221
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHH
Q 011226 236 ---ASIYVEAGLFEKAERALKELEN 257 (490)
Q Consensus 236 ---~~~~~~~~~~~~A~~~~~~~~~ 257 (490)
+..+...+++..|.+.|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2223346788888888877654
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.90 E-value=20 Score=34.62 Aligned_cols=116 Identities=10% Similarity=-0.034 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHHhCCCCCchhHH----HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 011226 278 GNLSEVYRIWRSLRLAFPNTANISYL----NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA 353 (490)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 353 (490)
.+.+.|...|........ .+..... .+.......+...++...+........ +.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 377888888888765432 2332222 222233334434555666665444332 333344455555677899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011226 354 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 397 (490)
...|+.|..... ....-.--+.+++...|+.++|..+|..+..
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888765311 1233334455677788999999998888864
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.55 E-value=9 Score=32.36 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=10.1
Q ss_pred hcCChhHHHHHHHHHHHhCCCC
Q 011226 276 QTGNLSEVYRIWRSLRLAFPNT 297 (490)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~ 297 (490)
..++.....++++.+.+.|..+
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCS
T ss_pred HccccchHHHHHHHHHHcCCCC
Confidence 3444444444555555554433
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.29 E-value=4 Score=34.24 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011226 202 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 258 (490)
Q Consensus 202 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 258 (490)
...+.|++++++.....-++. .|.|...-..|+..+|-.|+|++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 455677888888877777776 6777777778888888888888888887777664
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.23 E-value=14 Score=33.91 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011226 233 SNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSL 290 (490)
Q Consensus 233 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (490)
..+...|.+.|++++|.+.|.++...-..+ -...+-..++.+...+++..+...+.++
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344445555555555555555444422111 1233444444555555555555555444
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.32 E-value=14 Score=29.48 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHhhcCCCCCCHhHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCCCcHHHHHHH
Q 011226 107 DAAENYFVDLPETSKNHLTYGSLLNCYCK--ELMTEKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQE 183 (490)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 183 (490)
+.+...|.......-|+......+...-. .++...+.++|..|...|+--. +..|......+...|++.+|.++|+.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555554455566544444432222 4456788888888887766433 34455666667777888888888877
Q ss_pred HHHCCCCCC
Q 011226 184 MKASSIMPD 192 (490)
Q Consensus 184 ~~~~~~~p~ 192 (490)
-++.+-.|-
T Consensus 141 GI~~~A~P~ 149 (202)
T 3esl_A 141 GAENNCRPY 149 (202)
T ss_dssp HHHTTCBSH
T ss_pred HHHcCCccH
Confidence 777766654
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.97 E-value=21 Score=28.41 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCC
Q 011226 243 GLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 297 (490)
Q Consensus 243 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (490)
+...++.++|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335577777777776665433 3445566666667777777777777776666555
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=79.46 E-value=11 Score=31.80 Aligned_cols=204 Identities=10% Similarity=-0.034 Sum_probs=90.3
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcC
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVS---DQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKEL 137 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~ 137 (490)
+...++.|+++.... +.+.|..++.. .-...+...+..|+.+-+.-+++.-.. ..++..-.+ .+...+..|
T Consensus 9 L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~ 83 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFLLAAIAG 83 (285)
T ss_dssp HHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHT
T ss_pred HHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcC
Confidence 444455666544333 33344333211 112345566667777777666665333 112222222 233334556
Q ss_pred CHHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhh------------HHHHHHH
Q 011226 138 MTEKAEALLEKMKELNLGFSSM---PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT------------YNVWMRA 202 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------------~~~l~~~ 202 (490)
+.+-+ +.+.+.|..++.. .++. +...+..|+. ++++.+.+.|..++... -...+..
T Consensus 84 ~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~ 154 (285)
T 1wdy_A 84 SVKLL----KLFLSKGADVNECDFYGFTA-FMEAAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154 (285)
T ss_dssp CHHHH----HHHHHTTCCTTCBCTTCCBH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHH
T ss_pred CHHHH----HHHHHcCCCCCccCcccCCH-HHHHHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHH
Confidence 65433 3344445434322 2222 3333444543 34445555554443220 1123444
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHH--HHHHHHHHHhc
Q 011226 203 LAAVNDISGAERVIEEMKRDGRVAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSA--YQFLITLYGQT 277 (490)
Q Consensus 203 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 277 (490)
.+..|+.+-+..+++.. | ..++. .-. +.+...+..++.....++++.+.+.|..++... -.+.+...+..
T Consensus 155 A~~~~~~~~v~~Ll~~~---~-~~~~~~~~~g~-t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 155 AAEKGHVEVLKILLDEM---G-ADVNACDNMGR-NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHTCHHHHHHHHHTS---C-CCTTCCCTTSC-CHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhc---C-CCCCccCCCCC-CHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 55667766544444321 2 22221 111 233344456665555667777777776554311 11223344455
Q ss_pred CChhHHH
Q 011226 278 GNLSEVY 284 (490)
Q Consensus 278 ~~~~~a~ 284 (490)
|+.+-+.
T Consensus 230 ~~~~~v~ 236 (285)
T 1wdy_A 230 KHLGLVQ 236 (285)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 5554433
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.27 E-value=34 Score=28.76 Aligned_cols=121 Identities=10% Similarity=0.041 Sum_probs=83.0
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhc
Q 011226 307 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK----TWEIFSDYYLRN 382 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 382 (490)
....+.|+++.++.....-.+..+. |...-..|++.+|-.|+++.|.+-++...+. .|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH----
Confidence 4456789999999999888888776 8889999999999999999999999988875 33332 34444433
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCC
Q 011226 383 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE--QEKDVDGAEGFLEILKKAVD 441 (490)
Q Consensus 383 g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 441 (490)
+..=.+...-+..|..-- ....-...++.+.. ..|+.+.|.+.-+++.+.-+
T Consensus 78 ------E~~R~~vfaG~~~P~~~g-~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 222223333333222212 23344556666554 56999999999999987654
No 267
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=75.49 E-value=22 Score=30.26 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=9.9
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 011226 235 LASIYVEAGLFEKAERALKE 254 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~ 254 (490)
.+...+..|+.+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 34444555665554444443
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.45 E-value=17 Score=24.96 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=63.3
Q ss_pred ccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 011226 67 DRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALL 146 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 146 (490)
-....++|..+-+++...+. ...+-..-+..+...|++++|..+.+.+. .||...|.+|-.. +.|--+++..-+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL 91 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP--WPALEPWFALCEW--HLGLGAALDRRL 91 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC--CGGGHHHHHHHHH--HTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 35678899999999877763 22222233456678899999999988887 4888888777653 778888888888
Q ss_pred HHHHhCCCCCCcchH
Q 011226 147 EKMKELNLGFSSMPF 161 (490)
Q Consensus 147 ~~~~~~~~~~~~~~~ 161 (490)
.++...|- |....|
T Consensus 92 ~~la~sg~-p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSSD-PALADF 105 (115)
T ss_dssp HHHHTCSS-HHHHHH
T ss_pred HHHHhCCC-HHHHHH
Confidence 78887764 444444
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.01 E-value=23 Score=26.32 Aligned_cols=69 Identities=7% Similarity=0.027 Sum_probs=35.9
Q ss_pred CCChhhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 331 TYDIRVTNVMIGAYAKEGRL---ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 331 ~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
.|+..+--.+.-++.+..+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34444444445555554433 3455566665554322122233344456666666666666666666665
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=74.86 E-value=18 Score=24.91 Aligned_cols=88 Identities=14% Similarity=0.028 Sum_probs=62.3
Q ss_pred ccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 011226 67 DRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALL 146 (490)
Q Consensus 67 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 146 (490)
-....++|..+-+++...+. ...+-.+-+..+...|++++|..+.+.+. .||...|.+|-.. +.|--+++..-+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c--~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA--YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC--CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC--CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 35677889999988877763 22222233456678899999999998887 4888888777654 678888888888
Q ss_pred HHHHhCCCCCCcchH
Q 011226 147 EKMKELNLGFSSMPF 161 (490)
Q Consensus 147 ~~~~~~~~~~~~~~~ 161 (490)
.++...|- |....|
T Consensus 93 ~~la~sg~-p~~q~F 106 (116)
T 2p58_C 93 NRLARSQD-PRIQTF 106 (116)
T ss_dssp HHHTTCCC-HHHHHH
T ss_pred HHHHhCCC-HHHHHH
Confidence 77777664 444333
No 271
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=74.37 E-value=43 Score=29.11 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=9.5
Q ss_pred HHHHHhhCCHHHHHHHHhh
Q 011226 97 LDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~ 115 (490)
+...+..|+.+-+.-+++.
T Consensus 63 Lh~A~~~g~~~iv~~Ll~~ 81 (337)
T 4g8k_A 63 LHNAVQMSREDIVELLLRH 81 (337)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3344455665555555543
No 272
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=74.18 E-value=29 Score=31.68 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCC
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVS--DQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELM 138 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~ 138 (490)
+..-+..|+.+-+ +.+.+.|..++.. .....+...+..|+.+-+.-+++.-.. ...+..-. +.+...+..|+
T Consensus 18 L~~Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTC
T ss_pred HHHHHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCC
Confidence 4444556665443 4444455444322 112345666677888877777765443 11222222 23344456677
Q ss_pred HHHHHHHHH
Q 011226 139 TEKAEALLE 147 (490)
Q Consensus 139 ~~~a~~~~~ 147 (490)
.+-+.-+++
T Consensus 93 ~~~v~~Ll~ 101 (437)
T 1n11_A 93 TNMVKLLLE 101 (437)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 654444443
No 273
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=73.93 E-value=27 Score=26.72 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=45.8
Q ss_pred cchhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCC
Q 011226 20 HLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMN 87 (490)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 87 (490)
++...|.+.|...|.+...+..+++.+...|...+..-....++.....| .....+-.++.+.|+.
T Consensus 32 ~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~--~G~~~I~~eL~~KGI~ 97 (162)
T 3dfg_A 32 HSKKELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSG--YGPLHIRAELGTHGLD 97 (162)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTT--CCHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--ccHHHHHHHHHHcCCC
Confidence 45667788888877788888888888888887766665566666655432 2335666677778864
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=73.67 E-value=37 Score=30.02 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCC--hhhHHHHHHHHHhcCC
Q 011226 267 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD--LPGAEKCFKEWESGCA 330 (490)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 330 (490)
...++.-|...|+.++|...++++...... ...+...+..++-+.++ .+...+++..+...++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 345566666777777777777666321100 11223333344443322 2345555555555443
No 275
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=73.30 E-value=30 Score=26.74 Aligned_cols=47 Identities=9% Similarity=-0.045 Sum_probs=22.2
Q ss_pred CCccHHHHHHHHHH--hcCCCCHHhHHHHHHHHhcc-CCchHHHHHHHHH
Q 011226 35 SDVSVRQQLNQFLK--SKKRVFKWEVGDTLKKLRDR-KLYYPALKLSENM 81 (490)
Q Consensus 35 ~~~~~~~~l~~~~~--~~~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~ 81 (490)
+...+..+...+.. .....+...+..++..+... ........+|+.+
T Consensus 16 s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~ 65 (183)
T 1s6c_A 16 TKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAF 65 (183)
T ss_dssp CHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHh
Confidence 44444455554443 12235555565555555433 2333444555555
No 276
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=72.22 E-value=20 Score=28.01 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=49.8
Q ss_pred cchhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC
Q 011226 20 HLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK 88 (490)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 88 (490)
.+...|.+.|...+.+...+..+++.+...|...+..-....++...+.|.+. ...+-..+.+.|+.+
T Consensus 33 ~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 33 RTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDD 100 (177)
T ss_dssp CCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCH
T ss_pred ccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCH
Confidence 34556777777777788889999999999888877777777777776655443 355666778888643
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=71.95 E-value=27 Score=26.34 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCCCcHHHHHHHHH
Q 011226 107 DAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQEMK 185 (490)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 185 (490)
+.+.+.|.......-|+......+...-.. +.+.++|..|...|+--. +..|......+...|++.+|.++|+.-+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444444444434444333333321111 225556666655554322 2233444445555555555555555555
Q ss_pred HCCCCC
Q 011226 186 ASSIMP 191 (490)
Q Consensus 186 ~~~~~p 191 (490)
+.+-.|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 554444
No 278
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=71.88 E-value=38 Score=27.43 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHH
Q 011226 194 YTYNVWMRALAA 205 (490)
Q Consensus 194 ~~~~~l~~~~~~ 205 (490)
.+|.-++..+.+
T Consensus 190 Is~~EF~~~~~~ 201 (224)
T 1s1e_A 190 VTLDEFLESCQE 201 (224)
T ss_dssp EEHHHHHHHHHT
T ss_pred EeHHHHHHHHHh
Confidence 344444444443
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=71.51 E-value=15 Score=29.92 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=9.0
Q ss_pred HHHHHhhCCHHHHHHHHhh
Q 011226 97 LDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~~ 115 (490)
+...+..|+.+-+.-+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344445555555444443
No 280
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=70.22 E-value=42 Score=27.20 Aligned_cols=53 Identities=8% Similarity=-0.018 Sum_probs=24.5
Q ss_pred HHHhccCCchHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhhCCHHHHHHHHhh
Q 011226 63 KKLRDRKLYYPALKLSENMEKRGMNKTVSD--QAIHLDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 63 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~ 115 (490)
...+..|+.+.+..+++.+.+.+..++... -...+...+..|+.+-+..+++.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 334455666655555555544443332211 11233444455665555555543
No 281
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.32 E-value=93 Score=30.07 Aligned_cols=77 Identities=6% Similarity=0.009 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCC
Q 011226 95 IHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP 174 (490)
Q Consensus 95 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 174 (490)
.-+..+.+.+++.....++... +.+...-.....+....|+..+|......+=..|. ........++..+.+.|..
T Consensus 77 ~~l~~l~~~~~w~~~l~~~~~~---p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 77 RFVNELARREDWRGLLAFSPEK---PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSC---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhCCCHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC
Confidence 3445555666666666655441 22444444455555566666656555555544432 3345555666666555544
Q ss_pred C
Q 011226 175 E 175 (490)
Q Consensus 175 ~ 175 (490)
.
T Consensus 153 t 153 (618)
T 1qsa_A 153 D 153 (618)
T ss_dssp C
T ss_pred C
Confidence 3
No 282
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=66.77 E-value=41 Score=25.76 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc-chHHHHHHHHHhcCCCCcHHHHHHHHH
Q 011226 107 DAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSS-MPFNSLMTLYAKTGHPEKIPAIIQEMK 185 (490)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 185 (490)
+.+.+.|.......-|+......|..--.. +.+.++|..|...|+-... ..|......+...|++.+|.++|+.-+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444554444444222122 2355566666666553332 233444455555666666666666666
Q ss_pred HCCCCCC
Q 011226 186 ASSIMPD 192 (490)
Q Consensus 186 ~~~~~p~ 192 (490)
+.+-.|-
T Consensus 124 ~~~A~P~ 130 (164)
T 2wvi_A 124 QQKAEPL 130 (164)
T ss_dssp HTTCBSH
T ss_pred HcCCCcH
Confidence 5554544
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.46 E-value=44 Score=27.07 Aligned_cols=24 Identities=4% Similarity=-0.105 Sum_probs=13.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC
Q 011226 131 NCYCKELMTEKAEALLEKMKELNL 154 (490)
Q Consensus 131 ~~~~~~~~~~~a~~~~~~~~~~~~ 154 (490)
...+..|+.+....+++.+.+.+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 334555666666666665555443
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.26 E-value=75 Score=28.60 Aligned_cols=167 Identities=10% Similarity=-0.009 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC---CcchHHHHHHHHHhcCC-CCcHHHHHHHHHHCCCCCCHhhH--
Q 011226 124 LTYGSLLNCYCKELMTEKAEALLEKMKELN-LGF---SSMPFNSLMTLYAKTGH-PEKIPAIIQEMKASSIMPDSYTY-- 196 (490)
Q Consensus 124 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~-- 196 (490)
.....|...|.+.|+.++..+++......- ..| .......+++.+....+ .+.-.++..+..+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 356678888999999999888887765421 001 12233456666654322 2222333333322110 011222
Q ss_pred ----HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--cCCCCHHH
Q 011226 197 ----NVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENR--NAHRDLSA 266 (490)
Q Consensus 197 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 266 (490)
.-++..|...|++.+|.+++..+.+.-....+ ...+..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 13566777777777777777766664201111 122344455666677777777777665432 12123222
Q ss_pred HHHH----HHHHH-hcCChhHHHHHHHHHH
Q 011226 267 YQFL----ITLYG-QTGNLSEVYRIWRSLR 291 (490)
Q Consensus 267 ~~~l----~~~~~-~~~~~~~a~~~~~~~~ 291 (490)
...+ ...+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2211 12234 5677777766665554
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.44 E-value=41 Score=25.34 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 011226 388 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 443 (490)
Q Consensus 388 A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 443 (490)
+.++|..|...|+ -.--...|......+...|++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~I-----G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGI-----GTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTT-----TTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555555553 11234455555555555555555555555555544433
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.82 E-value=23 Score=28.79 Aligned_cols=18 Identities=0% Similarity=-0.178 Sum_probs=10.1
Q ss_pred HHHhhCCHHHHHHHHhhc
Q 011226 99 LVAKVQGIDAAENYFVDL 116 (490)
Q Consensus 99 ~~~~~g~~~~a~~~~~~~ 116 (490)
..++.|+++....+++.-
T Consensus 15 ~A~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAG 32 (240)
T ss_dssp HHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHcC
Confidence 344556666666665543
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.75 E-value=54 Score=27.69 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=52.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
.+...+..|+.+-+. .+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-..... .+..-.+..+...+..|
T Consensus 132 ~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 132 SFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp HHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHT
T ss_pred HHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcC
Confidence 444555566654433 333334332 111223334455667777666555554322221 12222222233344455
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 314 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
+.+ +.+.+.+.|..++..... -+..|+.+-+.-+++.-.+
T Consensus 207 ~~~----~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 207 DIE----MLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp CHH----HHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHHHHH
T ss_pred CHH----HHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHcCCC
Confidence 543 555556667666655421 2345666555555554443
No 288
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=61.68 E-value=68 Score=26.56 Aligned_cols=109 Identities=11% Similarity=0.153 Sum_probs=53.7
Q ss_pred HHHHHHHhhcCCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc----CC------
Q 011226 107 DAAENYFVDLPETSKNHLT---YGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKT----GH------ 173 (490)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~------ 173 (490)
..+..+|..+......... +..++..+......+....+|+.+-..+ -...++.-+...+... |.
T Consensus 129 ~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~--dG~I~~~Ef~~~l~~~~~~~g~~~~~~~ 206 (256)
T 2jul_A 129 TYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINK--DGCITKEEMLAIMKSIYDMMGRHTYPIL 206 (256)
T ss_dssp HHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSS--SSCBCHHHHHHHHHHHHHHCCCCCSCCS
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCC--CCcCcHHHHHHHHHHHHHHhCCCCCccc
Confidence 4566677766552222233 3333333333333345556665543222 2234444444443322 31
Q ss_pred -----CCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 011226 174 -----PEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 219 (490)
Q Consensus 174 -----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 219 (490)
.+.+..+|..+-..| -...++.-++..+.+...+-.+...|+.+
T Consensus 207 ~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 207 REDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp CCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 123444444442221 12357788888888888888888877664
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=60.80 E-value=25 Score=27.66 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=7.3
Q ss_pred HhhCCHHHHHHHHhh
Q 011226 101 AKVQGIDAAENYFVD 115 (490)
Q Consensus 101 ~~~g~~~~a~~~~~~ 115 (490)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 344555555555443
No 290
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.76 E-value=71 Score=27.53 Aligned_cols=64 Identities=27% Similarity=0.344 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHhCCC
Q 011226 232 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN--LSEVYRIWRSLRLAFPN 296 (490)
Q Consensus 232 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 296 (490)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...++-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 345677777788888888888877532111 12233333333333322 34455666666655543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.78 E-value=75 Score=26.10 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=46.7
Q ss_pred HHHHHHhccCCchHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 011226 60 DTLKKLRDRKLYYPALKLSENMEKR--GMNK----TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCY 133 (490)
Q Consensus 60 ~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 133 (490)
.-+..+..++++++|++++++..+. +.++ ........+..-.....-.-+..+.+.+.. ..+.......+..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 4466777888888888888877332 2221 111222223333333333333344433322 33444555566667
Q ss_pred HHcCCHHHHHHHHHHHH
Q 011226 134 CKELMTEKAEALLEKMK 150 (490)
Q Consensus 134 ~~~~~~~~a~~~~~~~~ 150 (490)
.+.|+-++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77777777777765543
No 292
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=58.42 E-value=94 Score=27.14 Aligned_cols=166 Identities=10% Similarity=0.048 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHH----HHHHHhCCCCCCcchHHHHHHHH
Q 011226 93 QAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEAL----LEKMKELNLGFSSMPFNSLMTLY 168 (490)
Q Consensus 93 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 168 (490)
|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ ++...+.++++|......++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 334445566677777777765332 2223445555544443 34445556666666666666665
Q ss_pred HhcCCCC-cHHHHHHHHHH----CC--CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q 011226 169 AKTGHPE-KIPAIIQEMKA----SS--IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE 241 (490)
Q Consensus 169 ~~~~~~~-~a~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 241 (490)
.....-+ .=.++.+++++ .| ..-|+.....+...|.+.+++.+|...|- .| ..++...+..++.-+..
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg-~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LG-TKESPEVLARMEYEWYK 179 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TS-CTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hc-CCchHHHHHHHHHHHHH
Confidence 5443322 11223333321 12 23355666667777777777777777662 13 33344555444443333
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 242 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
.+...+ ++...-.+++ -|...++...|..+++...
T Consensus 180 ~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 180 QDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp TSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred hcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 332111 1222222222 3455667777777665544
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.62 E-value=69 Score=25.33 Aligned_cols=48 Identities=10% Similarity=-0.033 Sum_probs=20.4
Q ss_pred ChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCC
Q 011226 89 TVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELM 138 (490)
Q Consensus 89 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 138 (490)
+...-...+.++.+.|+.+....+.+.+.. ++..+-...+.++.+.++
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKD--EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc
Confidence 444444445555555543333333333322 344444444444444444
No 294
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.56 E-value=1.2e+02 Score=27.34 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=30.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCCCch-----hHHHHHHHHHhcCChhhHHHHHHHHH
Q 011226 269 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-----SYLNMIQVLVNLKDLPGAEKCFKEWE 326 (490)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~ 326 (490)
.++..|...|++.+|.+++..+.+.-...|.. .+..-+..|...++..++...+....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35556666666666666666555432222222 23334455556666666666665543
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.55 E-value=1.4e+02 Score=30.66 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=73.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCC-------------
Q 011226 339 VMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK------------- 405 (490)
Q Consensus 339 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------- 405 (490)
.++..+...|..+-|.++..- ++-+...--.+..+|...|++++|..+|+++-. |+..+..
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccC
Confidence 356667777777766554322 223443333556678899999999999987542 2211110
Q ss_pred -CcC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcC
Q 011226 406 -WVP---SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV----EVFEPLIRTYAAAG 459 (490)
Q Consensus 406 -~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 459 (490)
..+ ...-|..++..+.+.+.++.+..+-+.+++.-...|. ..|..+.++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011 1236788888999999999999999988875432443 36777777776655
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.51 E-value=60 Score=24.15 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 011226 42 QLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGI 106 (490)
Q Consensus 42 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 106 (490)
+.+.+.+.|...++.-. .++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 9 ~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 9 ALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 33445556666555443 34444555566667888888887776556666777777777777654
No 297
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.66 E-value=49 Score=22.76 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=5.3
Q ss_pred HhcCChhHHHHH
Q 011226 275 GQTGNLSEVYRI 286 (490)
Q Consensus 275 ~~~~~~~~a~~~ 286 (490)
.+.|++++|..+
T Consensus 50 mNrG~Yq~Al~l 61 (115)
T 2uwj_G 50 ANQGRYQEALAF 61 (115)
T ss_dssp HHTTCHHHHHGG
T ss_pred HcchhHHHHHHh
Confidence 344444444443
No 298
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=53.93 E-value=51 Score=22.72 Aligned_cols=13 Identities=8% Similarity=0.074 Sum_probs=5.7
Q ss_pred HhcCChhHHHHHH
Q 011226 275 GQTGNLSEVYRIW 287 (490)
Q Consensus 275 ~~~~~~~~a~~~~ 287 (490)
.+.|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3444444444443
No 299
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=51.82 E-value=57 Score=26.48 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=40.7
Q ss_pred cchhHHHHHHhhcCCCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCC
Q 011226 20 HLEEALYDRLFKKGSSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMN 87 (490)
Q Consensus 20 ~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~ 87 (490)
.+...|.+.|...+.++..+..+++.+...|...+..-....++...+.+.+ ....+-..+.+.|+.
T Consensus 76 ~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 76 RTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 3344566677766666777777777777777766666556666655442222 234455566677754
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.28 E-value=19 Score=29.98 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCcch-------HHHHHHHHH--hcCCCCcHHHHHHHH
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNLGFSSMP-------FNSLMTLYA--KTGHPEKIPAIIQEM 184 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 184 (490)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344566777777777776666554444322 233333322 446655555555543
No 301
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=50.79 E-value=39 Score=26.43 Aligned_cols=14 Identities=14% Similarity=-0.081 Sum_probs=6.2
Q ss_pred HHHHHHHHHhCCCC
Q 011226 284 YRIWRSLRLAFPNT 297 (490)
Q Consensus 284 ~~~~~~~~~~~~~~ 297 (490)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 34444444444433
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.49 E-value=37 Score=27.51 Aligned_cols=54 Identities=13% Similarity=-0.039 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 011226 386 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG 444 (490)
Q Consensus 386 ~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 444 (490)
+.+.++|..|...|+ -.--...|......+...|++++|.++|+.-++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~I-----G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHI-----GQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTC-----STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCc-----chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 577899999999985 234578899999999999999999999999998776553
No 303
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=50.01 E-value=47 Score=27.40 Aligned_cols=22 Identities=9% Similarity=-0.188 Sum_probs=10.8
Q ss_pred HhccCCchHHHHHHHHHHhCCC
Q 011226 65 LRDRKLYYPALKLSENMEKRGM 86 (490)
Q Consensus 65 ~~~~~~~~~A~~~~~~~~~~~~ 86 (490)
.++.|+.+....+++.+.+.+.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCC
Confidence 3445555555555554444443
No 304
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.87 E-value=59 Score=24.83 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhhCCHH
Q 011226 42 QLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKR--GMNKTVSDQAIHLDLVAKVQGID 107 (490)
Q Consensus 42 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 107 (490)
+-+.+.+.|...+..- ..++..+...++.-.|.++++.+.+. +...+..|....++.+...|-+.
T Consensus 20 ~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 20 FKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3345555677776543 44566777777788889999988776 65567777777788888877654
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.68 E-value=1.7e+02 Score=27.44 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-CCCH--hhH-HHHHHHHHHcCChhHHHHHHHHHHHC
Q 011226 158 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI-MPDS--YTY-NVWMRALAAVNDISGAERVIEEMKRD 222 (490)
Q Consensus 158 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 222 (490)
...+|.+++.|...+.++.|..+.....---. .++. .+| -.+.+.+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46778999999999999999999998741100 0111 122 23456778889999999999998876
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.32 E-value=73 Score=23.14 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=10.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 011226 269 FLITLYGQTGNLSEVYRIWRSL 290 (490)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~ 290 (490)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444445555555444444
No 307
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.66 E-value=59 Score=24.21 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=39.7
Q ss_pred HHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHH
Q 011226 45 QFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGID 107 (490)
Q Consensus 45 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 107 (490)
.+.+.|..++..-. .++..+...+ .-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 9 ~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 9 DLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 34445666655432 3344444555 6678888888877776667777777788888777543
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=47.65 E-value=56 Score=26.39 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=10.7
Q ss_pred HHHHhcCChhhHHHHHHHHHh
Q 011226 307 QVLVNLKDLPGAEKCFKEWES 327 (490)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~ 327 (490)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333445555555555555543
No 309
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.48 E-value=55 Score=21.21 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=38.4
Q ss_pred HHHHhcCCCCHHhHHHHHHHHhccC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 011226 45 QFLKSKKRVFKWEVGDTLKKLRDRK-LYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGI 106 (490)
Q Consensus 45 ~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 106 (490)
.+.+.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3445566665544 44556665554 5666777888777666556666777777777776654
No 310
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=47.16 E-value=1.6e+02 Score=26.52 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=76.2
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCC
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVS--DQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELM 138 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~ 138 (490)
+...+..|+.+-+.-++ +.|..++.. .-...+...+..|+.+-+.-+++.-.. ...+..-++ .+...+..|+
T Consensus 51 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~ 125 (437)
T 1n11_A 51 LHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGH 125 (437)
T ss_dssp HHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCC
Confidence 44445566655444333 333322211 112345566677888777777765433 112222222 3334456677
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhh--HHHHHHHHHHcCChhHHHHHH
Q 011226 139 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT--YNVWMRALAAVNDISGAERVI 216 (490)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~ 216 (490)
.+.+..+++.-..... .+..-++ .+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+ ++
T Consensus 126 ~~~v~~Ll~~~~~~~~-~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v 195 (437)
T 1n11_A 126 VETVLALLEKEASQAC-MTKKGFT-PLHVAAKYGKVR----VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IV 195 (437)
T ss_dssp HHHHHHHHHTTCCSCC-CCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HH
T ss_pred HHHHHHHHhCCCCCcC-CCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HH
Confidence 7666555543211111 1111222 333344555543 4444445554443221 112334445666655 33
Q ss_pred HHHHHCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHH
Q 011226 217 EEMKRDGRVAADWTT--FSNLASIYVEAGLFEKAERAL 252 (490)
Q Consensus 217 ~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~ 252 (490)
+.+.+.| ..++... -.+.+...+..|+.+-+..++
T Consensus 196 ~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 232 (437)
T 1n11_A 196 KLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLL 232 (437)
T ss_dssp HHHGGGT-CCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4444444 3222211 012344455667765544444
No 311
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=46.96 E-value=1.4e+02 Score=25.76 Aligned_cols=165 Identities=15% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHH----HHHHHhCCCCCCcchHHHHHHHHH
Q 011226 94 AIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEAL----LEKMKELNLGFSSMPFNSLMTLYA 169 (490)
Q Consensus 94 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~ 169 (490)
.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ ++...+.+++++......++..+.
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34445566667777777765332 2234455666555443 455555677777777777776665
Q ss_pred hcCCCC-cHHHHHHHHHH----CC--CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHc
Q 011226 170 KTGHPE-KIPAIIQEMKA----SS--IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA 242 (490)
Q Consensus 170 ~~~~~~-~a~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (490)
....-+ .=.++++.+++ .| ...|+.....+...|.+.|++.+|+..|-. | ...+...+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~-~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----G-THDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----S-CHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----C-CCccHHHHHHHHHHHHHh
Confidence 533222 23444444432 22 223666777777888888888887776641 2 212344444444333333
Q ss_pred ---CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011226 243 ---GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR 291 (490)
Q Consensus 243 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (490)
|...++ +...-.+++ .|.-.|+...|..+++...
T Consensus 179 ~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332221 111112222 3455677777777777654
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.58 E-value=55 Score=28.83 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=8.3
Q ss_pred HHHHhhCCHHHHHHHHhh
Q 011226 98 DLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 98 ~~~~~~g~~~~a~~~~~~ 115 (490)
...+..|+.+.+..+++.
T Consensus 25 ~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 333444555555444443
No 313
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.79 E-value=1.9e+02 Score=29.75 Aligned_cols=131 Identities=14% Similarity=-0.015 Sum_probs=70.5
Q ss_pred HHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE 175 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (490)
++..+...|..+-|.++...+.. ++..--.+..+|...|++++|.+.|++.- .|+..+.......-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~---t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~---------- 881 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLR---------- 881 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS---SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGH----------
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchh----------
Confidence 45555566677766666655554 43333345566777777777777776643 23222111110000
Q ss_pred cHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHHcC
Q 011226 176 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT----TFSNLASIYVEAG 243 (490)
Q Consensus 176 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 243 (490)
....++.... . ......-|..+++.+-+.+.++.+.++-+..++.- ...|.. .|+.+.++.+..|
T Consensus 882 ~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~-~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHhhCC
Confidence 0000111000 0 01112357788889999999999999888888753 223333 4666666666544
No 314
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.64 E-value=88 Score=23.83 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=34.5
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--CCCCCchhHHHHHHHHHhcCChh
Q 011226 255 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FPNTANISYLNMIQVLVNLKDLP 316 (490)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 316 (490)
+.+.|.+.+. --..++..+...+..-.|.++++.+.+. ++..+..|...-++.+...|-+.
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445665543 2334455555556666677777777666 55555555555556666655443
No 315
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.12 E-value=86 Score=23.45 Aligned_cols=63 Identities=11% Similarity=0.038 Sum_probs=43.6
Q ss_pred HHHHHhcCCCCHHhHHHHHHHHhccC-CchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHH
Q 011226 44 NQFLKSKKRVFKWEVGDTLKKLRDRK-LYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGID 107 (490)
Q Consensus 44 ~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 107 (490)
+.+.+.|..++..-. .++..+...+ ..-.|.++++.+.+.+...+..|....++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345556766665544 3455555555 67788899998887776677777777788888877654
No 316
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.97 E-value=29 Score=21.14 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCCH
Q 011226 207 NDISGAERVIEEMKRDGRVAADW 229 (490)
Q Consensus 207 ~~~~~a~~~~~~~~~~~~~~~~~ 229 (490)
-|++.|...|.++...|.+||+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 37888888888887777666654
No 317
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=44.35 E-value=1.1e+02 Score=23.73 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 187 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 187 (490)
.-+++..++..+-..+ ....+|.-++..+... ....++|+.+-..
T Consensus 127 ~~~~~~~~~~~~D~d~--dg~i~~~eF~~~~~~~---~~~~~~F~~~D~d 171 (191)
T 1y1x_A 127 SEQTFQALMRKFDRQR--RGSLGFDDYVELSIFV---CRVRNVFAFYDRE 171 (191)
T ss_dssp CHHHHHHHHHHHCTTC--SSSBCHHHHHHHHHHH---HHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHhCCCC--CCeEeHHHHHHHHHHH---HHHHHHHHHhCcC
Confidence 4456667777664432 3456677666666544 4556666666443
No 318
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=43.90 E-value=1.1e+02 Score=23.48 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=7.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 011226 235 LASIYVEAGLFEKAERALKEL 255 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~ 255 (490)
....+...|++.+|.++|..-
T Consensus 102 wA~~lE~~~~~~~A~~Iy~~G 122 (164)
T 2wvi_A 102 WAEEYEARENFRKADAIFQEG 122 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.83 E-value=84 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=10.1
Q ss_pred HHHHHHhhCCHHHHHHHHhhcC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLP 117 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~ 117 (490)
++.-|...|+.++|...++++.
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHhC
Confidence 3444444444444444444443
No 320
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.58 E-value=1.2e+02 Score=23.90 Aligned_cols=154 Identities=14% Similarity=0.013 Sum_probs=78.9
Q ss_pred CChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 011226 88 KTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPFNSLMTL 167 (490)
Q Consensus 88 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (490)
++...-...+..+.+.|..+....+.+.+.. ++..+-...+.++.+.++.+ +...+..+... ++..+-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~a 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQSAAVA 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHHHHHH
Confidence 4555555666666666664444444444443 46666666666666666533 33333333332 455555666666
Q ss_pred HHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011226 168 YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK 247 (490)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (490)
+.+.++.+ +...+..+.+ .++...-...+.++...|+.+ +...+..+.+ .++..+-...+.++.+.+. .+
T Consensus 105 L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 105 LGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc-hh
Confidence 66666533 3344444443 245555555666666666543 3333333333 2344555555555555554 33
Q ss_pred HHHHHHHHHH
Q 011226 248 AERALKELEN 257 (490)
Q Consensus 248 A~~~~~~~~~ 257 (490)
+...+..+.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 321
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=43.46 E-value=1.3e+02 Score=24.23 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHH--HHH-----HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 350 LENAEELKERARRRGADPNAK--TWE-----IFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 350 ~~~a~~~~~~~~~~~~~p~~~--~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
++.|+.+|+.+.+.-..++.. ... ..+..|.+.|.+++|.+++++.....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 355777777776542111111 111 22346788999999999999887765
No 322
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.27 E-value=1.7e+02 Score=25.78 Aligned_cols=25 Identities=0% Similarity=0.045 Sum_probs=19.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHH
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENME 82 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~ 82 (490)
...++..|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4456778888899999988888864
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.22 E-value=63 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=9.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 011226 199 WMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
....+...|++.+|..+|+.-++
T Consensus 156 wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 156 YANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333334444444444444333
No 324
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=43.10 E-value=1.1e+02 Score=28.47 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCCcHHHHHHHhhCCC-CCCHHHHHHHH
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV-EVSEASKKLLE 485 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~-~p~~~~~~~l~ 485 (490)
..|.+.......++.|...|.++....| .+...||.|.-.....|+..++++..++..-. .|-+.+..-|.
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P-~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~ 227 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCC-CCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 3344444555667888899999999888 88889999998888888888888888777643 45444444443
No 325
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.95 E-value=1.4e+02 Score=24.51 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=40.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc--CCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011226 305 MIQVLVNLKDLPGAEKCFKEWESG--CATY----DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 378 (490)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 378 (490)
-++.+....++++|..++++..+. +.+. ........+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356666667777777766665421 1110 0011122222222222222333333333 22 3344444555556
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 011226 379 YLRNGDMKLAVDCLEKAID 397 (490)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~ 397 (490)
+.+.|+.++|.++|-+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 6666666666666655443
No 326
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=42.26 E-value=1.2e+02 Score=23.54 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 353 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 353 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+..++..+.+.|..-|..--..++....+.|.+. ...+-.++...|
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KG 97 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKG 97 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcC
Confidence 4445555555554433333334444443332221 133444455555
No 327
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.48 E-value=1e+02 Score=24.71 Aligned_cols=22 Identities=27% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 011226 130 LNCYCKELMTEKAEALLEKMKE 151 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~ 151 (490)
+..|.+.|.+++|.++|++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3345555555555555555444
No 328
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.23 E-value=1.3e+02 Score=23.76 Aligned_cols=47 Identities=9% Similarity=0.030 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCCCHh------HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 011226 106 IDAAENYFVDLPETSKNHL------TYGSLLNCYCKELMTEKAEALLEKMKEL 152 (490)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~ 152 (490)
++.|+.+|+.+....++.. .--..+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 5689999999988433222 1223456789999999999999996654
No 329
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.10 E-value=1e+02 Score=24.53 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=8.5
Q ss_pred HHHHhhCCHHHHHHHHhh
Q 011226 98 DLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 98 ~~~~~~g~~~~a~~~~~~ 115 (490)
...++.|+++....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334444555555544443
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.75 E-value=94 Score=24.96 Aligned_cols=53 Identities=4% Similarity=0.015 Sum_probs=26.9
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhh--HHHHHHHHHhcCChhHHHHHHHHHHH
Q 011226 306 IQVLVNLKDLPGAEKCFKEWESGCATYDIRV--TNVMIGAYAKEGRLENAEELKERARR 362 (490)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~ 362 (490)
+...+..|+.+-+.. +.+.|..++... -..-+......|+...+.++.+.+.+
T Consensus 181 L~~A~~~~~~~~v~~----Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 181 LHIAARENRYDCVVL----FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTCHHHHHH----HHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHH----HHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445566554333 333444333211 11233445566777777877777765
No 331
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.02 E-value=1.5e+02 Score=23.67 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=9.3
Q ss_pred HHHHhhCCHHHHHHHHhh
Q 011226 98 DLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 98 ~~~~~~g~~~~a~~~~~~ 115 (490)
...++.|+.+.+..+++.
T Consensus 8 ~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHTTCHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 334455555555555544
No 332
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.57 E-value=1.3e+02 Score=22.92 Aligned_cols=58 Identities=7% Similarity=-0.123 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHhCCCCC--ChhhHHHHHH-HH-----HhhCCHHHHHHHHhhc
Q 011226 58 VGDTLKKLRDRKLYYPALKLSENMEKRGMNK--TVSDQAIHLD-LV-----AKVQGIDAAENYFVDL 116 (490)
Q Consensus 58 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~~-----~~~g~~~~a~~~~~~~ 116 (490)
+...+..+. .|++-+|-++++.+-+....+ ....|..||. +. .+.|+...|..++.+.
T Consensus 36 ~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 36 VVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333444443 488888888888875554334 3334444444 21 2345555555555444
No 333
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.34 E-value=1.1e+02 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=10.3
Q ss_pred HHHHHHhhCCHHHHHHHHhhcC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLP 117 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~ 117 (490)
++.-|...|+.++|.+.++++.
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHhC
Confidence 3444444445555555444443
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.31 E-value=1.2e+02 Score=22.59 Aligned_cols=58 Identities=7% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 325 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
+.+.|.+++ .--..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 18 l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444555432 2333445555555555666666666666555555555444445555444
No 335
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.05 E-value=1.2e+02 Score=22.88 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC----CcHHHHHHHhhCCCCCCHHHHHHHHH
Q 011226 411 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR----TSPVMLRRLKMEKVEVSEASKKLLEA 486 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~~~~~~m~~~~~~p~~~~~~~l~~ 486 (490)
.....++.-|...|+.++|.+.++++..-.. -...+...+..++-+.++ ..-.++..+...|+-+......-+.+
T Consensus 10 kki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~ 88 (152)
T 2ion_A 10 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 88 (152)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 4457788889999999999999988642111 123334444444444333 23345666666676666555444433
No 336
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=36.86 E-value=85 Score=21.42 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=34.2
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHH---HHHHhccCCchHHHHHHHHH
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDT---LKKLRDRKLYYPALKLSENM 81 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~A~~~~~~~ 81 (490)
+...+..++..|......|....+..+ +..+...++.++|..+++++
T Consensus 10 ~l~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l 59 (97)
T 4fjo_A 10 EFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYM 59 (97)
T ss_dssp SHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 456678888888887777776665554 45556678888888887766
No 337
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.73 E-value=1.4e+02 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=14.8
Q ss_pred HHHHHHhhCCHHHHHHHHhhcC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLP 117 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~ 117 (490)
.+...+..|+.+-+..+++.-.
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~ 61 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAP 61 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCG
T ss_pred HHHHHHHcCCHHHHHHHHHcCc
Confidence 3555667788887777776543
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.54 E-value=65 Score=23.74 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCH
Q 011226 61 TLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGI 106 (490)
Q Consensus 61 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 106 (490)
++..+...++.-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4455555555666777777776666555666666666666666644
No 339
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=36.11 E-value=1.1e+02 Score=22.62 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=25.2
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 325 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 325 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|.---+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33444443322 223334444444 4455566665555544444444333344444433
No 340
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.75 E-value=1.3e+02 Score=21.99 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=17.9
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011226 340 MIGAYAKEG-RLENAEELKERARRRGADPNAKTWEIFSDYYLR 381 (490)
Q Consensus 340 li~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 381 (490)
++..+...+ ..-.|.++++.+.+.+...+..|..--+..+..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 333343333 444455555555554444444443333333333
No 341
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=35.40 E-value=1.4e+02 Score=22.51 Aligned_cols=67 Identities=12% Similarity=0.190 Sum_probs=47.0
Q ss_pred cchhHHHHHHhhc-----C-----CCCccHHHHHHHHHHhcCCCCHHhHHHHHHHHhccCCchHHHHHHHHHHhCCCCC
Q 011226 20 HLEEALYDRLFKK-----G-----SSDVSVRQQLNQFLKSKKRVFKWEVGDTLKKLRDRKLYYPALKLSENMEKRGMNK 88 (490)
Q Consensus 20 ~~~~~l~~~l~~~-----~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~ 88 (490)
++...|.+.|... + .+...+..+++.+...|...+..-....++...+.| .....+-.++.+.|+..
T Consensus 20 ~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 20 HSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp CCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred ccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 4455677777773 4 567788889999888888877777777777776544 23556777888888653
No 342
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.39 E-value=2.8e+02 Score=25.56 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=18.2
Q ss_pred CCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC
Q 011226 84 RGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE 118 (490)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 118 (490)
.|++-....|..-.+.+...|++++|.++--..+.
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~ 389 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 389 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc
Confidence 34333344455555555566666666555554444
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.21 E-value=1.4e+02 Score=22.32 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=16.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011226 349 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 383 (490)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 383 (490)
..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444333344444443
No 344
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.49 E-value=1.5e+02 Score=22.12 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=32.9
Q ss_pred HHHccCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCCh
Q 011226 255 LENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL 315 (490)
Q Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 315 (490)
+.+.|.+++. --..++..+...+..-.|.++++.+.+.++..+..|....+..+...|-+
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 4445554332 23344455555555666777777776666655565655556666655543
No 345
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=33.48 E-value=1.2e+02 Score=23.69 Aligned_cols=30 Identities=17% Similarity=-0.131 Sum_probs=13.8
Q ss_pred CCCHHhHHHHHHHHhccCCchHHHHHHHHH
Q 011226 52 RVFKWEVGDTLKKLRDRKLYYPALKLSENM 81 (490)
Q Consensus 52 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 81 (490)
..+...+...+..+...-...+...+++.+
T Consensus 53 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 82 (204)
T 3e3r_A 53 SLDADEFRQGLAKLGLVLDQAEAEGVCRKW 82 (204)
T ss_dssp SBCHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 345555555555443333334444444444
No 346
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=33.18 E-value=74 Score=23.10 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=19.9
Q ss_pred HHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCC
Q 011226 64 KLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQG 105 (490)
Q Consensus 64 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 105 (490)
.+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 19 ~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 19 LLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 333334444555555555444434444444444555554443
No 347
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=32.93 E-value=1.1e+02 Score=26.92 Aligned_cols=56 Identities=5% Similarity=0.026 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCChH-HHHHHHHHHHH-cCCCCCHHhHHHHHHHHHhcCCCc-HHHHHH
Q 011226 411 ETIRTFMRHFEQEKDVD-GAEGFLEILKK-AVDDLGVEVFEPLIRTYAAAGRTS-PVMLRR 468 (490)
Q Consensus 411 ~~~~~l~~~~~~~g~~~-~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~-~~~~~~ 468 (490)
..|..++..|...++.+ .++..++.... ... | ...+..++..+....-.. ++++..
T Consensus 273 ~~~~pll~~~~~~~~~ql~~L~alQ~~~~~~~~-~-~~~l~~~~~~LYd~dVi~Eeail~W 331 (339)
T 1ug3_A 273 KARAKLLQKYLCDEQKELQALYALQALVVTLEQ-P-PNLLRMFFDALYDEDVVKEDAFYSW 331 (339)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHTTC-C-TTHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccC-h-HHHHHHHHHHHhCcchhhHHHHHHH
Confidence 34566666666332211 12222332222 222 2 334555555555555533 344443
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.07 E-value=95 Score=22.48 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=14.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCCchhHHHHHHHHHhcC
Q 011226 277 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK 313 (490)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 313 (490)
.+..-.|.++++.+.+.++..+..|....++.+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444444444433333333333333333333
No 349
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=31.53 E-value=3.4e+02 Score=25.71 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=27.3
Q ss_pred HHHHHHHHhh-----cCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 011226 106 IDAAENYFVD-----LPETSKNHLTYGSLLNCYCKELMTEKAEALLE 147 (490)
Q Consensus 106 ~~~a~~~~~~-----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 147 (490)
-+...+++.. .....-.+..| .++..+.-.|.++.|..+++
T Consensus 221 ~E~~~eVm~~~~~~~~~~P~eHp~FW-~~v~~LvLRGl~~qA~~~L~ 266 (570)
T 3f3f_C 221 EEYIEQVFSVKDSTAGKKVFETQYFW-KLLNQLVLRGLLSQAIGCIE 266 (570)
T ss_dssp HHHHHHHTTC----CCSSSSCSHHHH-HHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHhcccccCCCCCCCCccHH-HHHHHHHHcccHHHHHHHHH
Confidence 3456666654 23333355677 67777888899998888886
No 350
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=31.00 E-value=96 Score=22.37 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=35.2
Q ss_pred CCccHHHHHHHHHHhcCCCCHHhHHHH---HHHHhccCCchHHHHHHHHH
Q 011226 35 SDVSVRQQLNQFLKSKKRVFKWEVGDT---LKKLRDRKLYYPALKLSENM 81 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~A~~~~~~~ 81 (490)
+...+..++..|......|....+..+ +..+.+.++.++|..+++++
T Consensus 37 ~l~evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l 86 (124)
T 3vu7_H 37 EFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYM 86 (124)
T ss_dssp SHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 567788899999888777776665554 44556678888888887776
No 351
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=30.83 E-value=41 Score=20.49 Aligned_cols=16 Identities=6% Similarity=-0.055 Sum_probs=7.3
Q ss_pred cCChhhHHHHHHHHHh
Q 011226 312 LKDLPGAEKCFKEWES 327 (490)
Q Consensus 312 ~~~~~~a~~~~~~~~~ 327 (490)
.|+.+.|...+-.|..
T Consensus 36 ~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGE 51 (59)
T ss_dssp TTCHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHcCcC
Confidence 3444444444444433
No 352
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.66 E-value=2e+02 Score=22.75 Aligned_cols=78 Identities=8% Similarity=-0.074 Sum_probs=37.4
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCC-CCCCHhHHHHHHHHHHHcCCHH
Q 011226 62 LKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPE-TSKNHLTYGSLLNCYCKELMTE 140 (490)
Q Consensus 62 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~ 140 (490)
+...++.|+.+....+++.-...-..++.... ..+...+..|+.+-+..+++.-.. ...+..-++.| ...+..|+.+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~ 87 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL-HIAASAGXDE 87 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHH-HHHHHcCHHH
Confidence 44455677777776666543211111122222 234555677787777777765333 22222222223 3334556654
Q ss_pred H
Q 011226 141 K 141 (490)
Q Consensus 141 ~ 141 (490)
-
T Consensus 88 ~ 88 (231)
T 3aji_A 88 I 88 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 353
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.47 E-value=1.9e+02 Score=22.40 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=7.3
Q ss_pred CHhhHHHHHHHHHHcCC
Q 011226 192 DSYTYNVWMRALAAVND 208 (490)
Q Consensus 192 ~~~~~~~l~~~~~~~~~ 208 (490)
+...-...+.++...++
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 43333444444444443
No 354
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=30.33 E-value=1.4e+02 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=17.9
Q ss_pred HHHHHHHHH-HhCCCCCChhhHHHHHHHHHhhCCH
Q 011226 73 PALKLSENM-EKRGMNKTVSDQAIHLDLVAKVQGI 106 (490)
Q Consensus 73 ~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~ 106 (490)
+..+.++.+ .......+...+..++..+...+++
T Consensus 73 ~l~~~ir~~a~~~~~s~~~ei~~r~~~~~~~~~~~ 107 (120)
T 1u9p_A 73 EVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRI 107 (120)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhc
Confidence 444444444 3333344556677777666655543
No 355
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.09 E-value=77 Score=23.33 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 011226 414 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR 460 (490)
Q Consensus 414 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 460 (490)
..++..+...++.-.|.++++.+.+.++..+..|...-++.+.+.|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34556666777788899999999988887788888888888888876
No 356
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.82 E-value=2.1e+02 Score=22.71 Aligned_cols=18 Identities=0% Similarity=0.025 Sum_probs=9.9
Q ss_pred cCCCCcHHHHHHHHHHCC
Q 011226 171 TGHPEKIPAIIQEMKASS 188 (490)
Q Consensus 171 ~~~~~~a~~~~~~~~~~~ 188 (490)
-.+.+.|+-++.+|++.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 344555555555555555
No 357
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=29.65 E-value=2.2e+02 Score=22.95 Aligned_cols=111 Identities=11% Similarity=-0.003 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHhcCChHHHH
Q 011226 351 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE 430 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 430 (490)
+.+..++..+.+.|..-|..--..++....+.+.+ ....+-.++...| .+..+....+..+......+.|.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KG--------I~~~~I~~al~~~~~~~e~e~a~ 163 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKG--------IGESDIDDALTQFTPEVQAELAK 163 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTT--------CCHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcC--------CCHHHHHHHHHhCCHHHHHHHHH
Confidence 44556666777776664444444555554442111 2344556666777 23333322222111111223444
Q ss_pred HHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCCcHHHHHHHh
Q 011226 431 GFLEILKKAVDD-LGVEVFEPLIRTYAAAGRTSPVMLRRLK 470 (490)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~~~~~~m~ 470 (490)
.+.++-...... ++.....-++..+.+.|=..+.+...+.
T Consensus 164 ~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~ 204 (221)
T 3d5l_A 164 KLALKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKD 204 (221)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455444332221 2244466666666666665554444443
No 358
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.61 E-value=1.7e+02 Score=21.60 Aligned_cols=58 Identities=9% Similarity=0.065 Sum_probs=27.2
Q ss_pred HHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 149 MKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 149 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
+.+.|++++. .-..++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 4445543332 223334444444555566666666655544444444444444444444
No 359
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=29.34 E-value=2.4e+02 Score=23.15 Aligned_cols=159 Identities=9% Similarity=-0.014 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHh--cCCCCHHhHHHHHHHHhccCCc-hHHHHHHHHHHhCC-CCCChhhHHHHHHH
Q 011226 24 ALYDRLFKKGSSDVSVRQQLNQFLKS--KKRVFKWEVGDTLKKLRDRKLY-YPALKLSENMEKRG-MNKTVSDQAIHLDL 99 (490)
Q Consensus 24 ~l~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~l~~~ 99 (490)
.+-......+.+...+..++..+... ....+...+..++..+...+.. ..+..+|+.+-..+ ...+..-+..++..
T Consensus 78 ~l~~l~~~~~~s~~ei~~l~~~fd~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~ 157 (256)
T 2jul_A 78 GLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSI 157 (256)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCCCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 44444444555777888888888664 3457888888888877544333 35666777663322 22344444444444
Q ss_pred HHhhCCHHHHHHHHhhcCC---CCCCHhHHHHHHHHHHH-cC-----------CHHHHHHHHHHHHhCCCCCCcchHHHH
Q 011226 100 VAKVQGIDAAENYFVDLPE---TSKNHLTYGSLLNCYCK-EL-----------MTEKAEALLEKMKELNLGFSSMPFNSL 164 (490)
Q Consensus 100 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~li~~~~~-~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l 164 (490)
+......+....+|+.+.. ...+..-+..++..+.. .| .-+.+..+|+.+-..+ ....+|.-+
T Consensus 158 ~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef 235 (256)
T 2jul_A 158 LLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEF 235 (256)
T ss_dssp HHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHH
T ss_pred HhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHH
Confidence 4333334556677776654 22344444444433321 13 2345666666654332 345788888
Q ss_pred HHHHHhcCCCCcHHHHHHHH
Q 011226 165 MTLYAKTGHPEKIPAIIQEM 184 (490)
Q Consensus 165 ~~~~~~~~~~~~a~~~~~~~ 184 (490)
+..+.+....-+++..|+.+
T Consensus 236 ~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 236 LETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhccc
Confidence 88888877766777766654
No 360
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.89 E-value=1.9e+02 Score=21.98 Aligned_cols=51 Identities=6% Similarity=0.038 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHHccCCC--CHHHHHHHHH-H-----HHhcCChhHHHHHHHHHHH
Q 011226 242 AGLFEKAERALKELENRNAHR--DLSAYQFLIT-L-----YGQTGNLSEVYRIWRSLRL 292 (490)
Q Consensus 242 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 292 (490)
.|++=+|-++++.+-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366666666666665543333 3344444554 2 2345666666666665543
No 361
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.57 E-value=2e+02 Score=22.15 Aligned_cols=59 Identities=12% Similarity=-0.012 Sum_probs=31.5
Q ss_pred HHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCc
Q 011226 99 LVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSS 158 (490)
Q Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 158 (490)
..++.|+++....++..-... .+...-.+.+...+..|+.+.-.++.+.+++.|..++.
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYED-KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 344667777766666554321 11011123444445566666666677777777765554
No 362
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.35 E-value=2.8e+02 Score=23.68 Aligned_cols=250 Identities=10% Similarity=0.000 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHHcCC
Q 011226 59 GDTLKKLRDRKLYYPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVDLPETSKNHLTYGSLLNCYCKELM 138 (490)
Q Consensus 59 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 138 (490)
...+...++.|+.+....++.. ....+......-...+...+..|+.+-+..+++.-.........-.+.+...+..|+
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 103 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred chhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCC
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCH-----------------------hh
Q 011226 139 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-----------------------YT 195 (490)
Q Consensus 139 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----------------------~~ 195 (490)
.+-+..+++.-..... ++..-++.|..+..... .++++.+.+.|..|+. ..
T Consensus 104 ~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 104 YEVTELLLKHGACVNA-MDLWQFTPLHEAASKNR-----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCCHHHH--HHHHHH
Q 011226 196 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY--QFLITL 273 (490)
Q Consensus 196 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~ 273 (490)
...-+...+..++.+....++..-... ...+..-.+.+..+..... ..-.++++.+.+.|..++.... .+.+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~t~L~~A~~~~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 253 (351)
T 3utm_A 178 KGHSLLQAAREADLAKVKKTLALEIIN--FKQPQSHETALHCAVASLH--PKRKQVAELLLRKGANVNEKNKDFMTPLHV 253 (351)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTTCCTT--CCCTTTCCCHHHHHHHCCS--TTHHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred cccHHHHHHHhccHHHHHHHHHhhccc--ccCCCCCCCHHHHHHHHhC--ccHHHHHHHHHHcCCCcCCcCCCCCCHHHH
Q ss_pred HHhcCChhHHHHHHHHHHHhCCCCCchhH--HHHHHHHHhcCChhhHHHHHH
Q 011226 274 YGQTGNLSEVYRIWRSLRLAFPNTANISY--LNMIQVLVNLKDLPGAEKCFK 323 (490)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~ 323 (490)
.+..|+. ++++.+.+.|..++.... .+.+...+..|+.+-+..+++
T Consensus 254 A~~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 301 (351)
T 3utm_A 254 AAERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301 (351)
T ss_dssp HHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
No 363
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.07 E-value=1.2e+02 Score=19.45 Aligned_cols=31 Identities=3% Similarity=-0.003 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHHHh
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVLVN 311 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 311 (490)
-.+.++++.+.+.++..+..|....+..+..
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3344444444443333333333333333333
No 364
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=27.38 E-value=2.2e+02 Score=22.15 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=31.9
Q ss_pred hhHHHHHHhhcCCCCccHHHHHHHHHHh--cCCCCHHhHHHHHHHHhcc-CCchHHHHHHHHH
Q 011226 22 EEALYDRLFKKGSSDVSVRQQLNQFLKS--KKRVFKWEVGDTLKKLRDR-KLYYPALKLSENM 81 (490)
Q Consensus 22 ~~~l~~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~ 81 (490)
...+-..+...+.+...+..++..+... ....+...+..++..+... ........+|+.+
T Consensus 18 ~~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~ 80 (207)
T 2d8n_A 18 KEILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSF 80 (207)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHh
Confidence 3444444444555666666666666543 2345666666666655433 2223445555555
No 365
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=27.33 E-value=1e+02 Score=18.77 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHhCCCCCchhHHHHHHHH
Q 011226 281 SEVYRIWRSLRLAFPNTANISYLNMIQVL 309 (490)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (490)
++|...|.+|++..-.++..||...+..+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 44555555555443333444555555544
No 366
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.12 E-value=3e+02 Score=23.56 Aligned_cols=146 Identities=16% Similarity=0.026 Sum_probs=67.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCCCchh--HHHHHHHHH
Q 011226 236 ASIYVEAGLFEKAERALKELENRNAHRD---LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS--YLNMIQVLV 310 (490)
Q Consensus 236 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 310 (490)
+...+..|+.+-+..++++ .|..++ ....+.+..+... +.......+.+.+.+.|..++... -.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3444566777655444432 243332 1122223222222 222333344455566666554321 123344556
Q ss_pred hcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011226 311 NLKDLPGAEKCFKEWESGCATYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL 387 (490)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 387 (490)
..|..+.+..++.. .+..++ ..-.+.| ...++.|+.+ +.+.+++.|..++..+ . +...++.|+.+
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL-~~A~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~- 315 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTAL-LLAVELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDHS- 315 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCBHH-HHHHHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCHH-
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCHH-
Confidence 67777766554432 222222 2222233 3344566654 4445566777776654 2 23334556643
Q ss_pred HHHHHHHHHhcCC
Q 011226 388 AVDCLEKAIDTGR 400 (490)
Q Consensus 388 A~~~~~~~~~~~~ 400 (490)
+.+.+++.|-
T Consensus 316 ---iv~~Ll~~GA 325 (337)
T 4g8k_A 316 ---LVKVLLSHGA 325 (337)
T ss_dssp ---HHHHHHHTTC
T ss_pred ---HHHHHHHCcC
Confidence 4555667773
No 367
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.08 E-value=2.4e+02 Score=22.42 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=22.6
Q ss_pred HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+..+.+.|+-.+-+|.+.| .|.-..-..++.+.-.-|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4567777888888887777 554444444444444444
No 368
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.57 E-value=1.9e+02 Score=21.06 Aligned_cols=44 Identities=5% Similarity=0.016 Sum_probs=20.7
Q ss_pred HHHHHHhcC-CCCcHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcC
Q 011226 164 LMTLYAKTG-HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 207 (490)
Q Consensus 164 l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 207 (490)
++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444 45556666666655544444444443444444444
No 369
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.42 E-value=3.2e+02 Score=23.70 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=43.9
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCcchH--HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCHhhHHH
Q 011226 121 KNHLTYGSLLNCYCKELMTEKAEALLEKMKELNLGFSSMPF--NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 198 (490)
Q Consensus 121 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 198 (490)
.|..-++.| ...+..|+.+.+..+++ .|..++.... .+.+...+..|+.+ +++.+.+.|..++...-..
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVD----TAKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHH----HHHHHHHHCCCCCCBTTBC
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHH----HHHHHHHCCCCccccCCCC
Confidence 344444444 44456677766555553 4443433211 12333344455543 3333344444333322222
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCC
Q 011226 199 WMRALAAVNDISGAERVIEEMKRDG 223 (490)
Q Consensus 199 l~~~~~~~~~~~~a~~~~~~~~~~~ 223 (490)
.+...+..|+.+-+..+++.....|
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHhccccC
Confidence 3444556677776666666544433
No 370
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.34 E-value=2.2e+02 Score=21.90 Aligned_cols=29 Identities=14% Similarity=-0.077 Sum_probs=14.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCC
Q 011226 235 LASIYVEAGLFEKAERALKELENRNAHRD 263 (490)
Q Consensus 235 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 263 (490)
.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 34444445555544555555555555443
No 371
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.25 E-value=2.4e+02 Score=22.29 Aligned_cols=34 Identities=9% Similarity=-0.079 Sum_probs=19.1
Q ss_pred HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 011226 241 EAGLFEKAERALKELENRNAHRDLSAYQFLITLY 274 (490)
Q Consensus 241 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (490)
+..+.|.|+-.+-+|.+.|-.|.-..-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3466777777777777766555443333344333
No 372
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.54 E-value=1.6e+02 Score=21.04 Aligned_cols=41 Identities=2% Similarity=-0.066 Sum_probs=20.9
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 011226 181 IQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR 221 (490)
Q Consensus 181 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 221 (490)
|+.+....+.|+...-..-+..+...++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444433322333344566677777776666655
No 373
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=25.11 E-value=1.5e+02 Score=19.92 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhhCCHHHHHHHHhh
Q 011226 72 YPALKLSENMEKRGMNKTVSDQAIHLDLVAKVQGIDAAENYFVD 115 (490)
Q Consensus 72 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 115 (490)
..+.++|..+.+.+ ..+..-...+...+.+.|+.+-..++...
T Consensus 40 ~s~~dlf~~Le~~~-~l~~~nl~~L~elL~~I~R~DLl~~v~~~ 82 (91)
T 1a1w_A 40 QSGLDLFSMLLEQN-DLEPGHTELLRELLASLRRHDLLRRVDDF 82 (91)
T ss_dssp SSSHHHHHHHHHTT-SCBTTBCHHHHHHHHHHTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcchHHHHHHHHHHCCHHHHHHHHHHh
Confidence 34589999998877 34555556677777788888877766543
No 374
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.82 E-value=2.6e+02 Score=22.13 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHh
Q 011226 139 TEKAEALLEKMKE 151 (490)
Q Consensus 139 ~~~a~~~~~~~~~ 151 (490)
.+.|+-.+-+|++
T Consensus 23 pDAAly~LaRMl~ 35 (201)
T 3bge_A 23 PDAALYWYARILT 35 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 375
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=24.55 E-value=2.4e+02 Score=21.65 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 011226 194 YTYNVWMRALAAVNDISGAERVIEEMKRD 222 (490)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 222 (490)
.+|..++..+... .....+|+..-..
T Consensus 146 i~~~eF~~~~~~~---~~~~~~F~~~D~d 171 (191)
T 1y1x_A 146 LGFDDYVELSIFV---CRVRNVFAFYDRE 171 (191)
T ss_dssp BCHHHHHHHHHHH---HHHHHHHHHHCTT
T ss_pred EeHHHHHHHHHHH---HHHHHHHHHhCcC
Confidence 4455555544433 4555666666544
No 376
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.43 E-value=3.5e+02 Score=23.53 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=11.3
Q ss_pred HHHHHHhhCCHHHHHHHHhhcC
Q 011226 96 HLDLVAKVQGIDAAENYFVDLP 117 (490)
Q Consensus 96 l~~~~~~~g~~~~a~~~~~~~~ 117 (490)
++.-|...|+.++|...++++.
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHcC
Confidence 3444444555555555555554
No 377
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=24.19 E-value=1.4e+02 Score=18.64 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 011226 412 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA 458 (490)
Q Consensus 412 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (490)
.++.++..++...-.++++..++++.+.|. .+..+|-.-++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 467778888888889999999999999998 8888888888877763
No 378
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.12 E-value=2.8e+02 Score=22.41 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=31.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCc-------chHHHHHHHHHhc---CCCCcHHHHHHHHHH
Q 011226 130 LNCYCKELMTEKAEALLEKMKELNLGFSS-------MPFNSLMTLYAKT---GHPEKIPAIIQEMKA 186 (490)
Q Consensus 130 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 186 (490)
+...+..|+.+....+++.+.+.|..++. .-.+.|.. .+.. |+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCc
Confidence 44456677777777777766666554433 22333333 3344 666666666655443
No 379
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=23.84 E-value=1.6e+02 Score=21.57 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=9.0
Q ss_pred HHHHHhhCCHHHHHHHHh
Q 011226 97 LDLVAKVQGIDAAENYFV 114 (490)
Q Consensus 97 ~~~~~~~g~~~~a~~~~~ 114 (490)
+...+..|+.+.+..+++
T Consensus 9 L~~A~~~g~~~~v~~Ll~ 26 (162)
T 1ihb_A 9 LASAAARGDLEQLTSLLQ 26 (162)
T ss_dssp HHHHHHHTCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334444555555555554
No 380
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.75 E-value=92 Score=22.86 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=8.5
Q ss_pred HHHhhCCHHHHHHHHhh
Q 011226 99 LVAKVQGIDAAENYFVD 115 (490)
Q Consensus 99 ~~~~~g~~~~a~~~~~~ 115 (490)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34444555555555544
No 381
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=23.62 E-value=1.8e+02 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=8.8
Q ss_pred HHHHHHhhcCCCCccHHHHHHH
Q 011226 24 ALYDRLFKKGSSDVSVRQQLNQ 45 (490)
Q Consensus 24 ~l~~~l~~~~~~~~~~~~~l~~ 45 (490)
.++..+...+...-+..++...
T Consensus 11 ~~F~~~D~d~~G~i~~~e~~~~ 32 (172)
T 2znd_A 11 NVFQRVDKDRSGVISDTELQQA 32 (172)
T ss_dssp HHHHHHCTTCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHH
Confidence 3444444433333333333333
No 382
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.77 E-value=1e+02 Score=19.96 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=20.9
Q ss_pred HHHhhcCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 011226 111 NYFVDLPETSKNHLTYGSLLNCYCKELMTEKAEALLEK 148 (490)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 148 (490)
.++.+++..+|++.+|+-+...+-+..-..++..+.++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45666666667777777666554443333444444443
No 383
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=22.15 E-value=2.6e+02 Score=21.19 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=15.7
Q ss_pred CCccHHHHHHHHHHh--cCCCCHHhHHHHHHHH
Q 011226 35 SDVSVRQQLNQFLKS--KKRVFKWEVGDTLKKL 65 (490)
Q Consensus 35 ~~~~~~~~l~~~~~~--~~~~~~~~~~~ll~~~ 65 (490)
+...+..++..+... ....+...+..++..+
T Consensus 23 ~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 1fpw_A 23 DRREIQQWHKGFLRDCPSGQLAREDFVKIYKQF 55 (190)
T ss_dssp THHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHH
Confidence 445555555555432 2235555555555554
No 384
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.78 E-value=3.1e+02 Score=21.94 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=6.6
Q ss_pred CCCcHHHHHHHHHHCC
Q 011226 173 HPEKIPAIIQEMKASS 188 (490)
Q Consensus 173 ~~~~a~~~~~~~~~~~ 188 (490)
+.+.|+-++.+|++.|
T Consensus 50 DpDAALywLaRMl~~G 65 (213)
T 3ctd_A 50 DPDATLYWLANMVEAG 65 (213)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3344444444444443
No 385
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.73 E-value=2.6e+02 Score=21.03 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011226 351 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 399 (490)
Q Consensus 351 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 399 (490)
+.+..++..+.+.|..-|..--..++......|. ....+-.++...|
T Consensus 47 ~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KG 93 (159)
T 3c1d_A 47 EDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKG 93 (159)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcC
Confidence 3344555555555554333333344444433331 1234444555555
No 386
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=21.06 E-value=89 Score=20.28 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=22.4
Q ss_pred cHHHHHHHhhCCCCCCHHHHHHHHHhhc
Q 011226 462 SPVMLRRLKMEKVEVSEASKKLLEAICV 489 (490)
Q Consensus 462 ~~~~~~~m~~~~~~p~~~~~~~l~~~c~ 489 (490)
++.+.+.+..-|+.|+..+...+..+|.
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~ 32 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCV 32 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 4567777888899999888888888885
No 387
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.05 E-value=3.2e+02 Score=21.85 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhcC
Q 011226 235 LASIYV---EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 278 (490)
Q Consensus 235 l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 278 (490)
+|+++. +..+.+.|+-++-+|.+.|-.|.-..-..++.+.-.-|
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 444443 35677888888888887776555444444444444443
No 388
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=20.88 E-value=2.6e+02 Score=20.77 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCcHHHHHHHHH
Q 011226 138 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMK 185 (490)
Q Consensus 138 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 185 (490)
..+.+..++..+-..+ ....+|.-++..+... +.+..+|+.+-
T Consensus 108 ~~~~~~~~~~~~d~~~--dg~i~~~eF~~~~~~~---~~~~~~F~~~D 150 (172)
T 2znd_A 108 SDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVL---QRLTDIFRRYD 150 (172)
T ss_dssp CHHHHHHHHHHHCTTC--SSSEEHHHHHHHHHHH---HHHHHHHHHHC
T ss_pred CHHHHHHHHHHhCCCC--CCcCcHHHHHHHHHHH---HHHHHHHHHhC
Confidence 3445556666553322 2345666655555443 45556666553
No 389
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.53 E-value=3e+02 Score=21.21 Aligned_cols=107 Identities=15% Similarity=-0.040 Sum_probs=47.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCcCCHHH
Q 011226 333 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET 412 (490)
Q Consensus 333 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~p~~~~ 412 (490)
+..+-...+.++...+..+. ...+..+.. .++...-...+.++...+.. .+...+..+... ++..+
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d---------~~~~v 154 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD---------EDGWV 154 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC---------SSHHH
T ss_pred CHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC---------CCHHH
Confidence 44444455555555554332 222222322 23444444445555554442 333444444332 45555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 011226 413 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA 457 (490)
Q Consensus 413 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 457 (490)
-...+.++.+.|.. ++...+..+.+. ++..+-...+.++.+
T Consensus 155 r~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 155 RQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 55555555555543 344444444432 334444444444443
Done!