Query         011227
Match_columns 490
No_of_seqs    190 out of 2032
Neff          11.3
Searched_HMMs 46136
Date          Thu Mar 28 23:00:44 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011227hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG0156 Cytochrome P450 CYP2 s 100.0 5.8E-82 1.3E-86  594.5  46.8  436   37-485    25-488 (489)
  2 PLN03234 cytochrome P450 83B1; 100.0 1.2E-76 2.6E-81  579.7  46.8  445   35-484    25-498 (499)
  3 PLN02183 ferulate 5-hydroxylas 100.0 1.6E-76 3.4E-81  579.1  46.2  448   37-487    35-514 (516)
  4 KOG0158 Cytochrome P450 CYP3/C 100.0 8.3E-77 1.8E-81  550.3  41.8  432   39-485    32-499 (499)
  5 PLN02687 flavonoid 3'-monooxyg 100.0 3.9E-76 8.4E-81  576.4  48.0  462   19-485    15-509 (517)
  6 PLN02971 tryptophan N-hydroxyl 100.0 1.6E-75 3.6E-80  573.6  47.7  446   34-486    53-535 (543)
  7 PLN03112 cytochrome P450 famil 100.0   8E-75 1.7E-79  568.4  48.1  451   32-486    26-509 (514)
  8 PLN02966 cytochrome P450 83A1  100.0 5.2E-75 1.1E-79  567.0  45.0  444   36-486    27-499 (502)
  9 PLN00110 flavonoid 3',5'-hydro 100.0 3.5E-74 7.6E-79  559.0  46.0  440   36-485    29-497 (504)
 10 PLN00168 Cytochrome P450; Prov 100.0 7.7E-74 1.7E-78  560.5  48.1  455   28-486    25-518 (519)
 11 PTZ00404 cytochrome P450; Prov 100.0 1.7E-74 3.6E-79  562.1  42.6  432   35-484    26-482 (482)
 12 PLN02394 trans-cinnamate 4-mon 100.0 9.5E-74 2.1E-78  559.8  45.8  445   35-486    27-503 (503)
 13 PLN02500 cytochrome P450 90B1  100.0 4.1E-73 8.9E-78  552.5  42.4  427   34-483    34-488 (490)
 14 KOG0157 Cytochrome P450 CYP4/C 100.0 1.3E-73 2.9E-78  549.9  37.6  435   36-485    33-496 (497)
 15 PLN02290 cytokinin trans-hydro 100.0 1.9E-73 4.2E-78  558.9  39.1  436   36-486    40-516 (516)
 16 PLN02655 ent-kaurene oxidase   100.0 2.6E-71 5.7E-76  535.8  41.7  428   40-485     1-464 (466)
 17 PLN03018 homomethionine N-hydr 100.0 4.4E-70 9.6E-75  530.9  49.6  452   28-485    30-524 (534)
 18 PLN02774 brassinosteroid-6-oxi 100.0 8.1E-71 1.8E-75  532.0  38.6  418   37-483    30-462 (463)
 19 KOG0159 Cytochrome P450 CYP11/ 100.0 1.2E-70 2.7E-75  496.6  35.0  434   36-485    48-518 (519)
 20 PLN03195 fatty acid omega-hydr 100.0 3.5E-70 7.5E-75  535.4  40.1  434   39-485    31-516 (516)
 21 PLN03141 3-epi-6-deoxocathaste 100.0 1.1E-69 2.5E-74  522.9  39.6  430   34-487     3-452 (452)
 22 PLN02196 abscisic acid 8'-hydr 100.0 1.4E-69   3E-74  522.9  39.0  416   35-483    32-461 (463)
 23 PLN02169 fatty acid (omega-1)- 100.0 4.6E-69   1E-73  522.1  41.4  429   39-484    32-499 (500)
 24 PLN02302 ent-kaurenoic acid ox 100.0 2.6E-68 5.7E-73  521.3  42.8  430   34-486    38-489 (490)
 25 PLN02738 carotene beta-ring hy 100.0 2.3E-68 4.9E-73  524.1  39.5  422   49-486   142-596 (633)
 26 PF00067 p450:  Cytochrome P450 100.0 5.2E-70 1.1E-74  533.3  27.9  411   40-457     1-442 (463)
 27 PLN02987 Cytochrome P450, fami 100.0 1.4E-67   3E-72  506.9  39.9  424   35-485    27-469 (472)
 28 PLN02936 epsilon-ring hydroxyl 100.0 2.4E-66 5.1E-71  503.4  38.1  432   39-486    13-483 (489)
 29 KOG0684 Cytochrome P450 [Secon 100.0   5E-66 1.1E-70  454.8  30.6  429   38-485    32-485 (486)
 30 PLN02426 cytochrome P450, fami 100.0   2E-64 4.2E-69  488.8  39.8  416   46-486    49-501 (502)
 31 PLN02648 allene oxide synthase 100.0 2.8E-60 6.1E-65  452.3  26.8  403   34-456    13-463 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 1.6E-55 3.6E-60  415.2  30.7  352   60-455    24-387 (411)
 33 PF08492 SRP72:  SRP72 RNA-bind  72.0     2.5 5.4E-05   27.2   1.4    8  399-406    44-51  (59)
 34 PF05952 ComX:  Bacillus compet  49.5      18 0.00038   23.2   2.2   17  300-316     5-21  (57)
 35 PF09201 SRX:  SRX;  InterPro:   45.8      17 0.00036   28.0   2.0   24  425-448    18-41  (148)
 36 PF12508 DUF3714:  Protein of u  43.3      19 0.00041   30.3   2.2   44  335-380    51-94  (200)
 37 KOG3653 Transforming growth fa  41.1 1.2E+02  0.0027   29.3   7.2   37   69-105   221-257 (534)
 38 PRK06789 flagellar motor switc  39.3      27 0.00058   23.9   2.0   40  342-381    21-62  (74)
 39 KOG3506 40S ribosomal protein   36.4      16 0.00035   22.8   0.6   11  418-428    12-22  (56)
 40 PHA03162 hypothetical protein;  34.0      39 0.00084   25.8   2.3   25  421-445     2-26  (135)
 41 PF15183 MRAP:  Melanocortin-2   33.4 1.4E+02   0.003   20.8   4.6    8   37-44     73-80  (90)
 42 PF12273 RCR:  Chitin synthesis  31.5      19 0.00041   27.9   0.5    7   25-31     22-28  (130)
 43 TIGR00847 ccoS cytochrome oxid  28.1   1E+02  0.0022   19.3   3.1   14    1-14      1-14  (51)
 44 PF12554 MOZART1:  Mitotic-spin  27.6      98  0.0021   19.1   2.9   35  284-318    13-47  (48)
 45 PF15330 SIT:  SHP2-interacting  27.6 1.5E+02  0.0033   22.1   4.5   10   45-54     45-54  (107)
 46 PF12444 Sox_N:  Sox developmen  26.5      43 0.00093   23.5   1.4   20  435-454    60-79  (84)
 47 PF15300 INT_SG_DDX_CT_C:  INTS  25.6      30 0.00065   22.9   0.5   16  335-350    39-54  (65)
 48 COG1759 5-formaminoimidazole-4  25.2 1.1E+02  0.0024   27.8   4.0   70  339-441   275-351 (361)
 49 KOG0114 Predicted RNA-binding   24.9 2.8E+02  0.0061   20.5   5.2   61   36-99     10-76  (124)
 50 COG0851 MinE Septum formation   24.6      48   0.001   23.3   1.4   18  307-324    35-52  (88)
 51 PF13625 Helicase_C_3:  Helicas  22.6 1.6E+02  0.0036   22.6   4.3   40   60-101    76-115 (129)
 52 PF08569 Mo25:  Mo25-like;  Int  21.8 6.6E+02   0.014   23.4   9.8   39  301-351   116-155 (335)
 53 PRK13685 hypothetical protein;  21.3 1.2E+02  0.0025   28.2   3.7   17    1-17      1-17  (326)
 54 COG3197 FixS Uncharacterized p  20.8 1.6E+02  0.0035   18.9   3.0   14    1-14      1-14  (58)
 55 PRK14857 tatA twin arginine tr  20.1 1.1E+02  0.0023   22.0   2.4    9    1-9       1-9   (90)

No 1  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=5.8e-82  Score=594.53  Aligned_cols=436  Identities=45%  Similarity=0.805  Sum_probs=372.3

Q ss_pred             CCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCC-Ccchhh
Q 011227           37 SNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPH-FPAAQI  115 (490)
Q Consensus        37 ~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~-~~~~~~  115 (490)
                      .+.||||+++|+|||+..+....++..+.+|.++|||+|.+++|..|+|||++++.+++++.+++..|++|+. ......
T Consensus        25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~~~~  104 (489)
T KOG0156|consen   25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTATLKY  104 (489)
T ss_pred             CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhhHHH
Confidence            6889999999999999998433499999999999999999999999999999999999999999999999987 224466


Q ss_pred             hccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhc-CCCceehhHHHHHHHHHHHHHHhc
Q 011227          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK-AGSVINLTQNVHSLMYGITSRAAF  194 (490)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~vdl~~~~~~~~~~~i~~~~~  194 (490)
                      ..+++.+.+++.+|+.|+.+||+.+..+++...++.....-.++++.+++.+... .+++||+.+.+..++.++|++.+|
T Consensus       105 ~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~~~f  184 (489)
T KOG0156|consen  105 LSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICRMLF  184 (489)
T ss_pred             hcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHHHHh
Confidence            7767788888989999999999999999999999998887799999999999852 227999999999999999999999


Q ss_pred             CCCCCcH--H---HHHHHHHHHHHhhcccchhhH------------------HHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011227          195 GNRSRDQ--E---AFVAVIEETTKVISGFNIADV------------------ETLHQEGVRIVENIINEHKKRKATLKNC  251 (490)
Q Consensus       195 G~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~  251 (490)
                      |.++...  +   ++...+.............+.                  .....++..++++.++++++.. ..   
T Consensus       185 G~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~-~~---  260 (489)
T KOG0156|consen  185 GRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKI-GD---  260 (489)
T ss_pred             CCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cc---
Confidence            9998752  2   355555555554443321110                  2223346677777777777655 11   


Q ss_pred             CCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCCC
Q 011227          252 KTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKV  328 (490)
Q Consensus       252 ~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~  328 (490)
                      +  ...|+++.+++..+++.... ++++++.+   ++++||+|||++++.|++.+|++||++|+|+++||+++++.++.+
T Consensus       261 ~--~~~D~vD~lL~~~~~~~~~~-~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v  337 (489)
T KOG0156|consen  261 E--EGRDFVDALLKLMKEEKAEG-LTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLV  337 (489)
T ss_pred             C--CCCcHHHHHHHhhcccccCC-CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCC
Confidence            1  23899999999866543222 88999887   789999999999999999999999999999999999999998889


Q ss_pred             CcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCC
Q 011227          329 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSV  408 (490)
Q Consensus       329 ~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~  408 (490)
                      +.+|+.+||||+|||+|++|++|++|..+||.+.+|+.++||.|||||.|+++.+++||||++|+||++|+||||++++ 
T Consensus       338 ~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-  416 (489)
T KOG0156|consen  338 SESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-  416 (489)
T ss_pred             ChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999975 


Q ss_pred             CCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCC
Q 011227          409 DYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       409 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  485 (490)
                      +.+.....++|||.|+|+|||..+|.+++.++++.|+++|||+++.+ +   +++... +.++..+.++.+...+|.
T Consensus       417 d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~-~---~d~~e~-~~~~~~~~pl~~~~~~r~  488 (489)
T KOG0156|consen  417 DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG-K---VDMEEA-GLTLKKKKPLKAVPVPRL  488 (489)
T ss_pred             cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC-C---CCCccc-ccceecCCcceeeeecCC
Confidence            22336678999999999999999999999999999999999999877 2   445555 367788889888888874


No 2  
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=1.2e-76  Score=579.69  Aligned_cols=445  Identities=38%  Similarity=0.703  Sum_probs=358.0

Q ss_pred             CCCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchh
Q 011227           35 RISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (490)
Q Consensus        35 ~~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~  114 (490)
                      ++.+.||||+++|++||+..+...+++.++.+++++||++|++++++.++|+++||+++++++.++...|..++......
T Consensus        25 ~~~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~  104 (499)
T PLN03234         25 KSLRLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQ  104 (499)
T ss_pred             CCCCCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCCeEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhh
Confidence            34577899999999999988744468889999999999999999999999999999999999998877777766543322


Q ss_pred             hhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHHHHH
Q 011227          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRA  192 (490)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i~~~  192 (490)
                      .....+....+...++.|+++|+.++.++|+++++..+.+.+.+.++++++.|..  ..++++|+.+.+..+++|+++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~  184 (499)
T PLN03234        105 TMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQ  184 (499)
T ss_pred             hhccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHH
Confidence            2222233344566789999999986679999999999999999999999999973  34678999999999999999999


Q ss_pred             hcCCCCCcH----HHHHHHHHHHHHhhccc------ch-----------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011227          193 AFGNRSRDQ----EAFVAVIEETTKVISGF------NI-----------ADVETLHQEGVRIVENIINEHKKRKATLKNC  251 (490)
Q Consensus       193 ~~G~~~~~~----~~~~~~~~~~~~~~~~~------~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  251 (490)
                      +||.+++..    .++.+.+..........      ++           ....++.+.+.+++.+.++++++....    
T Consensus       185 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----  260 (499)
T PLN03234        185 AFGKRYNEYGTEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLTGLSARLKKAFKELDTYLQELLDETLDPNRP----  260 (499)
T ss_pred             HhCCcccccchhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc----
Confidence            999987642    23444333322211100      00           112344555566666666665432211    


Q ss_pred             CCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCCC
Q 011227          252 KTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKV  328 (490)
Q Consensus       252 ~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~  328 (490)
                       .....|+++.+++..+++.....++++++..   ++++||+|||+++++|++++|++||++|+++++|+++++++.+.+
T Consensus       261 -~~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~  339 (499)
T PLN03234        261 -KQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKGYV  339 (499)
T ss_pred             -CCCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCC
Confidence             1135689999987654322223578888877   789999999999999999999999999999999999999877778


Q ss_pred             CcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCC-CCCCCCCcccccCCC
Q 011227          329 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYW-TEPESFIPERFLDHS  407 (490)
Q Consensus       329 ~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~Rf~~~~  407 (490)
                      +++++.+||||+|||+|+||++||++...+|.+.+|++++||.|||||.|+++++++||||++| +||++||||||+++.
T Consensus       340 ~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~  419 (499)
T PLN03234        340 SEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEH  419 (499)
T ss_pred             CHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCC
Confidence            9999999999999999999999999997679999999999999999999999999999999999 899999999999754


Q ss_pred             CC--CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecC
Q 011227          408 VD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPY  484 (490)
Q Consensus       408 ~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  484 (490)
                      ..  ....+..|+|||+|+|+|+|+++|++|+++++++|+++|+|+++++..+..+......++...++.++.+.+++|
T Consensus       420 ~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (499)
T PLN03234        420 KGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH  498 (499)
T ss_pred             CCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence            32  123466899999999999999999999999999999999999987755555666667788888888888888776


No 3  
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=1.6e-76  Score=579.06  Aligned_cols=448  Identities=39%  Similarity=0.741  Sum_probs=354.2

Q ss_pred             CCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhhh
Q 011227           37 SNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQIL  116 (490)
Q Consensus        37 ~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~~  116 (490)
                      .+.||||.++|++|++..+ ....+.++.+|+++||++|++++++.++|+|+||+++++++.++...|+.++........
T Consensus        35 ~~~ppgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~  113 (516)
T PLN02183         35 LPYPPGPKGLPIIGNMLMM-DQLTHRGLANLAKQYGGLFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPANIAISYL  113 (516)
T ss_pred             CCCCcCCCCCCeeccHHhc-CCcchHHHHHHHHHhCCeeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcccchhcc
Confidence            4678999999999999776 445677899999999999999999999999999999999999877777766543332222


Q ss_pred             ccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHhcCC
Q 011227          117 SYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAAFGN  196 (490)
Q Consensus       117 ~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~i~~~~~G~  196 (490)
                      ...+.+++++.+|+.|+++|+.++.++|+.+.++.+.+.. ++++.+++.|....++++|+.+.+..++.+++++++||.
T Consensus       114 ~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~vi~~~~fG~  192 (516)
T PLN02183        114 TYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWASVR-DEVDSMVRSVSSNIGKPVNIGELIFTLTRNITYRAAFGS  192 (516)
T ss_pred             ccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHhHhhcC
Confidence            2223567888899999999998667899999999988864 678999999975557789999999999999999999998


Q ss_pred             CCCcH-HHHHHHHHHHHHhhcc------cch----------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCCc
Q 011227          197 RSRDQ-EAFVAVIEETTKVISG------FNI----------ADVETLHQEGVRIVENIINEHKKRKATLKNC--KTGDDE  257 (490)
Q Consensus       197 ~~~~~-~~~~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~  257 (490)
                      ..+.. +++.+.+..+......      .++          ....+..+.+.+++.+.++++.+........  ......
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  272 (516)
T PLN02183        193 SSNEGQDEFIKILQEFSKLFGAFNVADFIPWLGWIDPQGLNKRLVKARKSLDGFIDDIIDDHIQKRKNQNADNDSEEAET  272 (516)
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHhcchhHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            76543 3455555444332111      010          1122344556666666676665433211110  111246


Q ss_pred             cHHHHHHhhhcCCC---------CCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCC
Q 011227          258 DLVDVLLKIQGHGD---------LDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT  325 (490)
Q Consensus       258 ~ll~~ll~~~~~~~---------~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~  325 (490)
                      |+++.+++...++.         ....++++++..   ++++||+|||+++++|++++|++||++|+|+++|++++++.+
T Consensus       273 d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~Ei~~v~~~~  352 (516)
T PLN02183        273 DMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVGLN  352 (516)
T ss_pred             cHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCC
Confidence            89999997543211         012478888876   788999999999999999999999999999999999999866


Q ss_pred             CCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccC
Q 011227          326 GKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLD  405 (490)
Q Consensus       326 ~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~  405 (490)
                      +.++.+++.+||||+|||+||||++||+|+.. |.+.+|++++||.|||||.|.++.+++||||++|+||++|+||||++
T Consensus       353 ~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~-r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~  431 (516)
T PLN02183        353 RRVEESDLEKLTYLKCTLKETLRLHPPIPLLL-HETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLK  431 (516)
T ss_pred             CCCCHHHhccChHHHHHHHHHhccCCCcccee-eeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCC
Confidence            67899999999999999999999999999985 99999999999999999999999999999999999999999999997


Q ss_pred             CCCC-CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecC
Q 011227          406 HSVD-YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPY  484 (490)
Q Consensus       406 ~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  484 (490)
                      ++.. ....++.|+|||+|+|+|+|++||++|+++++++|+++|++++.++..+........++.+++++.++.+.+++|
T Consensus       432 ~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  511 (516)
T PLN02183        432 PGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR  511 (516)
T ss_pred             CCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence            5432 122456899999999999999999999999999999999999877653333444445566666777899999999


Q ss_pred             CCC
Q 011227          485 HPS  487 (490)
Q Consensus       485 ~~~  487 (490)
                      -.|
T Consensus       512 ~~~  514 (516)
T PLN02183        512 LQC  514 (516)
T ss_pred             CCC
Confidence            654


No 4  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=8.3e-77  Score=550.26  Aligned_cols=432  Identities=29%  Similarity=0.458  Sum_probs=343.6

Q ss_pred             CCCCCCCCCccccccccCCC-CCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCC--CCcchhh
Q 011227           39 PPPGPWKLPVIGNLYQLAGS-LPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRP--HFPAAQI  115 (490)
Q Consensus        39 ~ppgp~~~p~~G~~~~~~~~-~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~--~~~~~~~  115 (490)
                      -+|+|.++|++||+..+... .+.....+...+||+++.+..+-+|.++|.||+.+++|+.++...|+++.  .+.....
T Consensus        32 Gi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d~~~  111 (499)
T KOG0158|consen   32 GIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYRPVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGDPED  111 (499)
T ss_pred             CCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCCCEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCCCCC
Confidence            56888889999999887432 23444444444459999999999999999999999999999888888743  3222221


Q ss_pred             hccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhcCC--CceehhHHHHHHHHHHHHHHh
Q 011227          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAG--SVINLTQNVHSLMYGITSRAA  193 (490)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~--~~vdl~~~~~~~~~~~i~~~~  193 (490)
                        ......++..+|+.||++|.. ++|.|+...++.+.+.+.+.+.++++.+.....  ..+++.+.+..++.|+|++++
T Consensus       112 --~l~~~~Lf~~~g~~WK~lR~~-lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~A  188 (499)
T KOG0158|consen  112 --PLSALNLFFLRGERWKRLRTK-LSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCA  188 (499)
T ss_pred             --cccccCchhccCchHHHHHHh-hccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhh
Confidence              113356888999999999999 799999999999999999999999999985332  478899999999999999999


Q ss_pred             cCCCCCcH----HHHHHHHHHHHHhhc-ccch--------hhH----------HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011227          194 FGNRSRDQ----EAFVAVIEETTKVIS-GFNI--------ADV----------ETLHQEGVRIVENIINEHKKRKATLKN  250 (490)
Q Consensus       194 ~G~~~~~~----~~~~~~~~~~~~~~~-~~~~--------~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~~  250 (490)
                      ||.+.+..    .+|...-........ ...+        ..+          ....+.+.+.+...++.+    +.++ 
T Consensus       189 fG~~~~s~~d~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~~~~~~~~~~~~~~~~v~~~v~~R----~~~~-  263 (499)
T KOG0158|consen  189 FGLDANSLRDPKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLRVKLFPEDVTDFFRKLVNSRVEQR----EKEN-  263 (499)
T ss_pred             cccchhhhcCchHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhhcccChHHHHHHHHHHHHHHHHHH----HhcC-
Confidence            99987642    244443333332211 1110        000          233333444444444444    2111 


Q ss_pred             CCCCCCccHHHHHHhhhcC---CCCCc-ccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc
Q 011227          251 CKTGDDEDLVDVLLKIQGH---GDLDS-FLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH  323 (490)
Q Consensus       251 ~~~~~~~~ll~~ll~~~~~---~~~~~-~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~  323 (490)
                         ....|+++.+++++..   +.... .++.+++++   .+++||.||||+++++++|+||+||++|+|||+||+++..
T Consensus       264 ---~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~  340 (499)
T KOG0158|consen  264 ---IERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLE  340 (499)
T ss_pred             ---CCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Confidence               2689999999998753   11112 489999988   7889999999999999999999999999999999999987


Q ss_pred             CCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceec-ceecCCCCEEEeccccccCCCCCCCCCCCCCccc
Q 011227          324 RTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQIN-GFDIPVKARVIVNAWAIGRDPEYWTEPESFIPER  402 (490)
Q Consensus       324 ~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~-g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R  402 (490)
                      +...+++|.+.+|+||++||+||||+||+++.. .|.+.+|++++ ++.||||+.|.++++++||||++||||++|+|||
T Consensus       341 ~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~-~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PER  419 (499)
T KOG0158|consen  341 EKEGLTYDSLSKLKYLDMVIKETLRLYPPAPFL-NRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPER  419 (499)
T ss_pred             ccCCCCHHHHhCCcHHHHHHHHHHhhCCCcccc-cceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCcc
Confidence            665599999999999999999999999999996 59999999999 9999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEee
Q 011227          403 FLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPI  482 (490)
Q Consensus       403 f~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (490)
                      |.++... ...+..|+|||.|||.|+|.+||.+|+|++|++||++|+++..+... .. ......+.++.|+.+|.++..
T Consensus       420 F~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~-~~-~~~~~~~~~l~pk~gi~Lkl~  496 (499)
T KOG0158|consen  420 FEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTI-IP-LEGDPKGFTLSPKGGIWLKLE  496 (499)
T ss_pred             CCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCccc-Cc-ccCCccceeeecCCceEEEEE
Confidence            9977644 33678999999999999999999999999999999999999887322 22 222223777899999999999


Q ss_pred             cCC
Q 011227          483 PYH  485 (490)
Q Consensus       483 ~r~  485 (490)
                      +|+
T Consensus       497 ~r~  499 (499)
T KOG0158|consen  497 PRD  499 (499)
T ss_pred             eCC
Confidence            985


No 5  
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=3.9e-76  Score=576.42  Aligned_cols=462  Identities=39%  Similarity=0.715  Sum_probs=366.4

Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHH
Q 011227           19 SALAVLKLEKRSQTNNRISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMK   98 (490)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~   98 (490)
                      .++++.++++..+...+..+.||||.++|++||+..+ ..+++..+.+|+++||++|++++++.++++++||+++++++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~pPgp~~~P~iG~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~p~~~~~il~   93 (517)
T PLN02687         15 SVLVWCLLLRRGGSGKHKRPLPPGPRGWPVLGNLPQL-GPKPHHTMAALAKTYGPLFRLRFGFVDVVVAASASVAAQFLR   93 (517)
T ss_pred             HHHHHHHHhccccCCCCCCCCCccCCCCCccccHHhc-CCchhHHHHHHHHHhCCeeEEecCCceEEEeCCHHHHHHHHH
Confidence            3444444445555555556788999999999999887 556889999999999999999999999999999999999999


Q ss_pred             hcCcccCCCCCCcchhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh-cCCCceeh
Q 011227           99 THDVVFASRPHFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS-KAGSVINL  177 (490)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~vdl  177 (490)
                      ++...|++++...........+.+++++.+|+.|+++||.+..+.|+.++++.+.+.+.+++.++++.|.. .+++++|+
T Consensus        94 ~~~~~f~~r~~~~~~~~~~~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~  173 (517)
T PLN02687         94 THDANFSNRPPNSGAEHMAYNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNL  173 (517)
T ss_pred             hcchhhhcCCCccchhhhccCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeH
Confidence            87777877665443333333345678888899999999995448899999999999999999999999974 34578999


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCCc------HHHHHHHHHHHHHhhccc------ch----------hhHHHHHHHHHHHHH
Q 011227          178 TQNVHSLMYGITSRAAFGNRSRD------QEAFVAVIEETTKVISGF------NI----------ADVETLHQEGVRIVE  235 (490)
Q Consensus       178 ~~~~~~~~~~~i~~~~~G~~~~~------~~~~~~~~~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~  235 (490)
                      .+.+..+++|+++..+||.++..      .+++.+.+..+.......      +.          ....+..+.+.+++.
T Consensus       174 ~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~  253 (517)
T PLN02687        174 GQLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALRWLDLQGVVGKMKRLHRRFDAMMN  253 (517)
T ss_pred             HHHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHHhccCcHHHHhhhHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987531      234555555444322111      00          011233444556666


Q ss_pred             HHHHHHHHHHhhhccCCCCCCccHHHHHHhhhcCC---CCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcH
Q 011227          236 NIINEHKKRKATLKNCKTGDDEDLVDVLLKIQGHG---DLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPR  309 (490)
Q Consensus       236 ~~i~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~---~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~  309 (490)
                      +.++++++.....    .....|+++.+++..++.   .....++++++..   ++++||+|||+++++|++++|++||+
T Consensus       254 ~~i~~r~~~~~~~----~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~  329 (517)
T PLN02687        254 GIIEEHKAAGQTG----SEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPD  329 (517)
T ss_pred             HHHHHHHHhcccc----CcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHH
Confidence            6666665432211    113569999999875431   1123478888877   67899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCC
Q 011227          310 VMKKAQAEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDP  389 (490)
Q Consensus       310 ~~~~l~~Ei~~~~~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~  389 (490)
                      +|+++++|++++.++++.++++++.+||||+|||+||||++||++...+|.+.+|++++|+.||+||.|.++.+++||||
T Consensus       330 ~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~  409 (517)
T PLN02687        330 ILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDP  409 (517)
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCc
Confidence            99999999999998777789999999999999999999999999987689999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccccCCCCC----CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCccc
Q 011227          390 EYWTEPESFIPERFLDHSVD----YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTE  465 (490)
Q Consensus       390 ~~~~~p~~F~P~Rf~~~~~~----~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~  465 (490)
                      ++|+||++|+||||+++...    ....+..|+|||+|+|.|+|++||++|+++++++|+++|+|++.++..+.+++...
T Consensus       410 ~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~  489 (517)
T PLN02687        410 EQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEE  489 (517)
T ss_pred             ccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCccc
Confidence            99999999999999974321    11245679999999999999999999999999999999999988764433344444


Q ss_pred             ccCeeeeccCceeEEeecCC
Q 011227          466 AFGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~r~  485 (490)
                      ..+.++.+..++.++++||.
T Consensus       490 ~~~~~~~~~~~~~~~~~~R~  509 (517)
T PLN02687        490 AYGLTLQRAVPLMVHPRPRL  509 (517)
T ss_pred             ccceeeecCCCeEEeeccCC
Confidence            55666677788999999985


No 6  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=1.6e-75  Score=573.57  Aligned_cols=446  Identities=26%  Similarity=0.496  Sum_probs=349.3

Q ss_pred             CCCCCCCCCCCCCCccccccccCCCC-CchhHHHHhhhcC-CeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCc
Q 011227           34 NRISNPPPGPWKLPVIGNLYQLAGSL-PHHGLRDLSKKYG-PLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFP  111 (490)
Q Consensus        34 ~~~~~~ppgp~~~p~~G~~~~~~~~~-~~~~~~~~~~~yG-~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~  111 (490)
                      +++.+.||||.++|++||+..+.... .+.++.+|.++|| ++|++++|+.++|+|+||+.++++|.++...|+.++...
T Consensus        53 ~r~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~  132 (543)
T PLN02971         53 KKLHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY  132 (543)
T ss_pred             CCCCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc
Confidence            34557899999999999998773322 3567899999999 899999999999999999999999998887888776544


Q ss_pred             chhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHH
Q 011227          112 AAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGIT  189 (490)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i  189 (490)
                      .....+.+..++++..+|+.|+++||.+...++++..++.+.+.+.++++.+++.+.+  ..++++|+.+.+..++++++
T Consensus       133 ~~~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi  212 (543)
T PLN02971        133 AQKILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAI  212 (543)
T ss_pred             chhhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHH
Confidence            3333332223468888999999999997677888877778888899999999888864  24568999999999999999


Q ss_pred             HHHhcCCCCCc-------H--HHHHHHHHHHHHhhc---c------cchh------h----HHHHHHHHHHHHHHHHHHH
Q 011227          190 SRAAFGNRSRD-------Q--EAFVAVIEETTKVIS---G------FNIA------D----VETLHQEGVRIVENIINEH  241 (490)
Q Consensus       190 ~~~~~G~~~~~-------~--~~~~~~~~~~~~~~~---~------~~~~------~----~~~~~~~~~~~~~~~i~~~  241 (490)
                      ++++||.+...       +  .++...+..+.....   .      ++..      .    .....+.+.+++.+.++++
T Consensus       213 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  292 (543)
T PLN02971        213 KRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRESSAIMDKYHDPIIDER  292 (543)
T ss_pred             HHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987521       1  122223333222110   0      0000      0    1122334556666677666


Q ss_pred             HHHHhhhccCCCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 011227          242 KKRKATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEV  318 (490)
Q Consensus       242 ~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei  318 (490)
                      ++......   .....|+++.+++..++++ ...++++++..   ++++||+|||+++++|++++|+.||++|+|+++||
T Consensus       293 ~~~~~~~~---~~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI  368 (543)
T PLN02971        293 IKMWREGK---RTQIEDFLDIFISIKDEAG-QPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEI  368 (543)
T ss_pred             HHHHhccC---CCCCcCHHHHHHhhhcccC-CCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            54332111   1124699999998643321 12378888877   78999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCC
Q 011227          319 REVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESF  398 (490)
Q Consensus       319 ~~~~~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F  398 (490)
                      ++++++++.++++++.+||||+|||+|+||++|++|...+|.+.+|++++||.|||||.|+++++++||||++|+||++|
T Consensus       369 ~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F  448 (543)
T PLN02971        369 DRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSF  448 (543)
T ss_pred             HHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCcccc
Confidence            99998777899999999999999999999999999987789999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCC--CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCc
Q 011227          399 IPERFLDHSVD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQD  476 (490)
Q Consensus       399 ~P~Rf~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (490)
                      +||||+++...  ....+..|+|||+|+|+|+|++||+.|+++++++|+++|+|++.++.+.  +++.+.++ ++..+.+
T Consensus       449 ~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~--~~~~~~~~-~~~~~~~  525 (543)
T PLN02971        449 KPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETR--VELMESSH-DMFLSKP  525 (543)
T ss_pred             CcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCC--cchhhhcC-ccccccc
Confidence            99999975322  1124568999999999999999999999999999999999998765432  44544455 6656668


Q ss_pred             eeEEeecCCC
Q 011227          477 LCMTPIPYHP  486 (490)
Q Consensus       477 ~~~~~~~r~~  486 (490)
                      +.+.+.||.+
T Consensus       526 ~~~~~~~~~~  535 (543)
T PLN02971        526 LVMVGELRLS  535 (543)
T ss_pred             ceeeeeecCC
Confidence            9999999844


No 7  
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=8e-75  Score=568.39  Aligned_cols=451  Identities=36%  Similarity=0.670  Sum_probs=358.5

Q ss_pred             ccCCCCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCc
Q 011227           32 TNNRISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFP  111 (490)
Q Consensus        32 ~~~~~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~  111 (490)
                      +.+++.+.||||.++|++||+..+ ..+++.++.+++++||++|++++++.++++++||+++++++.++...|+.++...
T Consensus        26 ~~~~~~~~ppgp~~~pl~G~~~~~-~~~~~~~~~~~~~kyG~v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~  104 (514)
T PLN03112         26 SMRKSLRLPPGPPRWPIVGNLLQL-GPLPHRDLASLCKKYGPLVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTL  104 (514)
T ss_pred             cccCCCCCccCCCCCCeeeeHHhc-CCchHHHHHHHHHHhCCeEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcc
Confidence            335555788999999999999887 5678899999999999999999999999999999999999988777777665443


Q ss_pred             chhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHH
Q 011227          112 AAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGIT  189 (490)
Q Consensus       112 ~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i  189 (490)
                      ......++....++..+|+.|+++||.++.++|+.++++.+.+.+.++++.+++.+.+  ..++++|+.+.++.++++++
T Consensus       105 ~~~~~~~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi  184 (514)
T PLN03112        105 AAVHLAYGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNV  184 (514)
T ss_pred             cceeeccCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHH
Confidence            2222122234456778899999999997678899999999999999999999987653  34678999999999999999


Q ss_pred             HHHhcCCCCCc--------HHHHHHHHHHHHHhhccc------ch----------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011227          190 SRAAFGNRSRD--------QEAFVAVIEETTKVISGF------NI----------ADVETLHQEGVRIVENIINEHKKRK  245 (490)
Q Consensus       190 ~~~~~G~~~~~--------~~~~~~~~~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~~~i~~~~~~~  245 (490)
                      +.++||.++..        ..++...+..+.......      +.          ....+..+.+.+++...++++++..
T Consensus       185 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  264 (514)
T PLN03112        185 TRMLLGKQYFGAESAGPKEAMEFMHITHELFRLLGVIYLGDYLPAWRWLDPYGCEKKMREVEKRVDEFHDKIIDEHRRAR  264 (514)
T ss_pred             HHHHcCCccccccccchHHHHHHHHHHHHHHHHcCCCcHHHhChHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999987521        124445444443221110      10          1123344556666677777665433


Q ss_pred             hhhccCCCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Q 011227          246 ATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVF  322 (490)
Q Consensus       246 ~~~~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~  322 (490)
                      +...  ......|+++.++++..+++ ...++++++.+   ++++||+|||+++++|++++|++||++|+++++||++++
T Consensus       265 ~~~~--~~~~~~d~l~~ll~~~~~~~-~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~  341 (514)
T PLN03112        265 SGKL--PGGKDMDFVDVLLSLPGENG-KEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVV  341 (514)
T ss_pred             cccc--cCCccchHHHHHHHhhcccc-ccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhc
Confidence            2111  01134689999998643321 12477888876   788999999999999999999999999999999999999


Q ss_pred             cCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCccc
Q 011227          323 HRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPER  402 (490)
Q Consensus       323 ~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R  402 (490)
                      ++++.++++++.+||||+|||+||||++|+++...+|.+.+|++++|+.|||||.|.++++++||||++|+||++|||||
T Consensus       342 ~~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeR  421 (514)
T PLN03112        342 GRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPER  421 (514)
T ss_pred             CCCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcc
Confidence            87777999999999999999999999999999876799999999999999999999999999999999999999999999


Q ss_pred             ccCCCCC----CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCcee
Q 011227          403 FLDHSVD----YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLC  478 (490)
Q Consensus       403 f~~~~~~----~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (490)
                      |..+...    ....+..|+|||+|+|+|+|++||++|+++++++|+++|||++.++....++......+.+++++.++.
T Consensus       422 f~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (514)
T PLN03112        422 HWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLR  501 (514)
T ss_pred             cCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeE
Confidence            8653211    112346799999999999999999999999999999999999876543334555556677778888999


Q ss_pred             EEeecCCC
Q 011227          479 MTPIPYHP  486 (490)
Q Consensus       479 ~~~~~r~~  486 (490)
                      ++++||-+
T Consensus       502 ~~~~~r~~  509 (514)
T PLN03112        502 AVATPRLA  509 (514)
T ss_pred             EEeecCCc
Confidence            99999954


No 8  
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=5.2e-75  Score=566.97  Aligned_cols=444  Identities=38%  Similarity=0.719  Sum_probs=345.9

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhh
Q 011227           36 ISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI  115 (490)
Q Consensus        36 ~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~  115 (490)
                      ..+.||||+++|++||+..+...+++.++.+|+++||++|++++++.++|+++||+.+++++.++...|.+++.......
T Consensus        27 ~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~~~~~~~  106 (502)
T PLN02966         27 RYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPPHRGHEF  106 (502)
T ss_pred             CCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCCCcccee
Confidence            34678999999999999887455788999999999999999999999999999999999999987766665544332222


Q ss_pred             hccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHHHHHh
Q 011227          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRAA  193 (490)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i~~~~  193 (490)
                      ...+.....+..+|+.|+++|+.++.++|+++.+..+.+.+.+.++++++.|.+  ..++++|+.+++..+++|+++.++
T Consensus       107 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~~  186 (502)
T PLN02966        107 ISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQA  186 (502)
T ss_pred             eccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHHH
Confidence            222233344566799999999997789999999999999999999999999974  345689999999999999999999


Q ss_pred             cCCCCCcH-H---HHHHHHHHHHHhhcc------cch-------hhH----HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 011227          194 FGNRSRDQ-E---AFVAVIEETTKVISG------FNI-------ADV----ETLHQEGVRIVENIINEHKKRKATLKNCK  252 (490)
Q Consensus       194 ~G~~~~~~-~---~~~~~~~~~~~~~~~------~~~-------~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (490)
                      ||.+++.. +   ++.+.+.........      ++.       ...    ....+...+.+.+.+++..+...     .
T Consensus       187 fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~  261 (502)
T PLN02966        187 FGKKYNEDGEEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLSGLTAYMKECFERQDTYIQEVVNETLDPKR-----V  261 (502)
T ss_pred             hCCccCccchHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c
Confidence            99987542 2   233333322211111      010       000    12233344445555544432111     0


Q ss_pred             CCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCC--CC
Q 011227          253 TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT--GK  327 (490)
Q Consensus       253 ~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~--~~  327 (490)
                      .....++++.+++..+++.....++++++..   ++++||+|||+++++|++|+|++||++|+|+++||+++++++  +.
T Consensus       262 ~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~  341 (502)
T PLN02966        262 KPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTF  341 (502)
T ss_pred             ccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCc
Confidence            1134689999997654432223478888876   788999999999999999999999999999999999998743  35


Q ss_pred             CCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCC-CCCCCCCcccccCC
Q 011227          328 VNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYW-TEPESFIPERFLDH  406 (490)
Q Consensus       328 ~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~Rf~~~  406 (490)
                      ++++++.+||||+|||+|+||++|+++...+|.+.+|++++||.|||||.|.++++++||||++| +||++|+||||+++
T Consensus       342 ~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~  421 (502)
T PLN02966        342 VTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEK  421 (502)
T ss_pred             CCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCC
Confidence            78999999999999999999999999997679999999999999999999999999999999999 99999999999975


Q ss_pred             CCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCCC
Q 011227          407 SVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  486 (490)
Q Consensus       407 ~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  486 (490)
                      +......+..|+|||+|+|+|+|++||++|+++++++|+++|+|++.++.++..++.+...|+...++..+  +..+||-
T Consensus       422 ~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  499 (502)
T PLN02966        422 EVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHL--KLVPEKV  499 (502)
T ss_pred             CCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCe--EEEEEeC
Confidence            43222245689999999999999999999999999999999999998776555566666667666444444  5555553


No 9  
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=3.5e-74  Score=559.03  Aligned_cols=440  Identities=34%  Similarity=0.693  Sum_probs=351.0

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhh
Q 011227           36 ISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI  115 (490)
Q Consensus        36 ~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~  115 (490)
                      ..+.||||.++|++||+..+ ..+++.++.+++++||++|++++|+.++|+|+||+++++++.++...|+.++.......
T Consensus        29 ~~~~pPgp~~~Pl~G~l~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~  107 (504)
T PLN00110         29 SRKLPPGPRGWPLLGALPLL-GNMPHVALAKMAKRYGPVMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATH  107 (504)
T ss_pred             cCCCcccCCCCCeeechhhc-CCchHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhh
Confidence            34678999999999998777 45678999999999999999999999999999999999999987777777765433222


Q ss_pred             hccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHHHHHh
Q 011227          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRAA  193 (490)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i~~~~  193 (490)
                      ...++.+++++.+|+.|+++|+.+..++|+++.++.+.+.+.+++..+++.+.+  ..|+++|+.+++..++.++++..+
T Consensus       108 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~  187 (504)
T PLN00110        108 LAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVI  187 (504)
T ss_pred             hccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHH
Confidence            223345678888999999999996557899999999999999999999988864  346789999999999999999999


Q ss_pred             cCCCCC-----cHHHHHHHHHHHHHhhccc------chh------h----HHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 011227          194 FGNRSR-----DQEAFVAVIEETTKVISGF------NIA------D----VETLHQEGVRIVENIINEHKKRKATLKNCK  252 (490)
Q Consensus       194 ~G~~~~-----~~~~~~~~~~~~~~~~~~~------~~~------~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (490)
                      ||.+..     ..+++...+..........      +..      .    ..+..+.+.+++.+.++++.+....     
T Consensus       188 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----  262 (504)
T PLN00110        188 LSRRVFETKGSESNEFKDMVVELMTTAGYFNIGDFIPSIAWMDIQGIERGMKHLHKKFDKLLTRMIEEHTASAHE-----  262 (504)
T ss_pred             hCCcccccCchhHHHHHHHHHHHHHHhccccHHHHcchHhhhCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----
Confidence            998751     1234555555543321111      100      0    1122344445555566555432211     


Q ss_pred             CCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCCCC
Q 011227          253 TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKVN  329 (490)
Q Consensus       253 ~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~  329 (490)
                      .....|+++.+++..... ....++++++..   ++++||+|||+++++|++++|++||++|+|+++|+++++++++.++
T Consensus       263 ~~~~~d~l~~ll~~~~~~-~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~  341 (504)
T PLN00110        263 RKGNPDFLDVVMANQENS-TGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNRRLV  341 (504)
T ss_pred             cccCCChhhHHhhccccc-CCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC
Confidence            113468999999754321 123478888877   7789999999999999999999999999999999999998777789


Q ss_pred             cccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCC
Q 011227          330 ETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVD  409 (490)
Q Consensus       330 ~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~  409 (490)
                      ++++++||||+|||+||||++|++++..+|.+.+|++++||.|||||.|+++.+++||||++|+||++|+||||+++...
T Consensus       342 ~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~  421 (504)
T PLN00110        342 ESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNA  421 (504)
T ss_pred             HHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCc
Confidence            99999999999999999999999998768999999999999999999999999999999999999999999999965322


Q ss_pred             CC---CCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCC
Q 011227          410 YK---GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       410 ~~---~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  485 (490)
                      ..   .....++|||+|+|.|+|++||++|+++++++|+++|||++.++.+   .......+.+++++.++.+++++|.
T Consensus       422 ~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r~  497 (504)
T PLN00110        422 KIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVE---LNMDEAFGLALQKAVPLSAMVTPRL  497 (504)
T ss_pred             ccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCc---cCcccccccccccCCCceEeeccCC
Confidence            11   1235799999999999999999999999999999999999876532   3333345677888889999999984


No 10 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=7.7e-74  Score=560.48  Aligned_cols=455  Identities=27%  Similarity=0.469  Sum_probs=352.5

Q ss_pred             hcccccCCCCCCCCCCCCCCccccccccC--CCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccC
Q 011227           28 KRSQTNNRISNPPPGPWKLPVIGNLYQLA--GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFA  105 (490)
Q Consensus        28 ~~~~~~~~~~~~ppgp~~~p~~G~~~~~~--~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~  105 (490)
                      ......++..+.||||+++|++||+..+.  ..+++..+.+|+++||++|++++|+.++|+++||+++++++.++...|+
T Consensus        25 ~~~~~~~~~~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~  104 (519)
T PLN00168         25 HGGRGGKKGRRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRVGSRLSVFVADRRLAHAALVERGAALA  104 (519)
T ss_pred             hhccCCCCCCCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEcCCccEEEECCHHHHHHHHHhcCCccc
Confidence            34444455567899999999999987552  2346788999999999999999999999999999999999998877777


Q ss_pred             CCCCCcchhhhccCCceEEE-ccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhc--CCCceehhHHHH
Q 011227          106 SRPHFPAAQILSYNYRDIIF-SSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK--AGSVINLTQNVH  182 (490)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~-~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~--~~~~vdl~~~~~  182 (490)
                      .++........+. +.+.+. ..+|+.|+++||.++.+.|+.+.++.+.+.+.+.++.+++.|.+.  .++.+|+.+.+.
T Consensus       105 ~rp~~~~~~~~~~-~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~  183 (519)
T PLN00168        105 DRPAVASSRLLGE-SDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQ  183 (519)
T ss_pred             cCCcccchhhhcc-CCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence            7665433223221 112222 368999999998668999999999999999999999999999743  335689999999


Q ss_pred             HHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHhh-------cccc-h---------hhHHHHHHHHHHHHHHHHHHHHH
Q 011227          183 SLMYGITSRAAFGNRSRDQ--EAFVAVIEETTKVI-------SGFN-I---------ADVETLHQEGVRIVENIINEHKK  243 (490)
Q Consensus       183 ~~~~~~i~~~~~G~~~~~~--~~~~~~~~~~~~~~-------~~~~-~---------~~~~~~~~~~~~~~~~~i~~~~~  243 (490)
                      .++.++++.++||.++++.  +.+......+....       ...+ +         ....+..+.+.+++..+++++++
T Consensus       184 ~~~~~ii~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  263 (519)
T PLN00168        184 YAMFCLLVLMCFGERLDEPAVRAIAAAQRDWLLYVSKKMSVFAFFPAVTKHLFRGRLQKALALRRRQKELFVPLIDARRE  263 (519)
T ss_pred             HHHHHHHHHHHcCCCcChhhHHHHHHHHHHHHHHhcCCCCHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987642  12222222221111       0001 0         01124556677777778877765


Q ss_pred             HHhhhcc----CC--CCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHH
Q 011227          244 RKATLKN----CK--TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKA  314 (490)
Q Consensus       244 ~~~~~~~----~~--~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l  314 (490)
                      .......    .+  .....|+++.|++..........+++++++.   ++++||+|||+++++|++++|++||++|+|+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~kl  343 (519)
T PLN00168        264 YKNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKL  343 (519)
T ss_pred             HhhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHHHH
Confidence            4321100    00  0114689999997643222223588888887   7889999999999999999999999999999


Q ss_pred             HHHHHHhhcCC-CCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCC
Q 011227          315 QAEVREVFHRT-GKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWT  393 (490)
Q Consensus       315 ~~Ei~~~~~~~-~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~  393 (490)
                      ++||+++++++ +.++++++.+||||+|||+||||++|+++..++|.+.+|++++||.||||+.|.++++++||||++|+
T Consensus       344 ~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~  423 (519)
T PLN00168        344 HDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWE  423 (519)
T ss_pred             HHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccC
Confidence            99999999754 56899999999999999999999999999887899999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCC-----CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccC
Q 011227          394 EPESFIPERFLDHSVD-----YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFG  468 (490)
Q Consensus       394 ~p~~F~P~Rf~~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~  468 (490)
                      ||++|+||||++....     ....+..|+|||+|+|+|+|++||++|+++++++|+++|+|++.++.+   .+.....+
T Consensus       424 ~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~  500 (519)
T PLN00168        424 RPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDE---VDFAEKRE  500 (519)
T ss_pred             CccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCc---CChhhhce
Confidence            9999999999964211     112346799999999999999999999999999999999999876532   23332334


Q ss_pred             eeeeccCceeEEeecCCC
Q 011227          469 VTVRRKQDLCMTPIPYHP  486 (490)
Q Consensus       469 ~~~~~~~~~~~~~~~r~~  486 (490)
                      .++.++.++++++++|+.
T Consensus       501 ~~~~~~~~~~~~~~~R~~  518 (519)
T PLN00168        501 FTTVMAKPLRARLVPRRT  518 (519)
T ss_pred             eEEeecCCcEEEEEeccC
Confidence            566677789999999874


No 11 
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=1.7e-74  Score=562.12  Aligned_cols=432  Identities=25%  Similarity=0.452  Sum_probs=335.7

Q ss_pred             CCCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchh
Q 011227           35 RISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (490)
Q Consensus        35 ~~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~  114 (490)
                      ...+.+|||.++|++||+..+ ..+++..+.+++++||++|++++++.++|+++||+++++++.++...|..++......
T Consensus        26 ~~~~~~pgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~  104 (482)
T PTZ00404         26 IHKNELKGPIPIPILGNLHQL-GNLPHRDLTKMSKKYGGIFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK  104 (482)
T ss_pred             ccCCCCCCCCCCCeeccHhhh-cccHHHHHHHHHHHhCCeeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence            345678999999999999887 5578899999999999999999999999999999999999997765566554433221


Q ss_pred             hhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHHHHH
Q 011227          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRA  192 (490)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i~~~  192 (490)
                      ...  ...+++..+|+.|+++|+. +.+.|+...++.+.+.+.+.++.+++.|.+  ..++.+|+.+++..+++|+++.+
T Consensus       105 ~~~--~~~~l~~~~g~~w~~~Rk~-~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~  181 (482)
T PTZ00404        105 HGT--FYHGIVTSSGEYWKRNREI-VGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKY  181 (482)
T ss_pred             eec--cCCceeccChHHHHHHHHH-HHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHH
Confidence            111  1345677899999999999 689999999999999999999999999974  34667999999999999999999


Q ss_pred             hcCCCCCcH--------HHHHHHHHHHHHhhcccch-----------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 011227          193 AFGNRSRDQ--------EAFVAVIEETTKVISGFNI-----------ADVETLHQEGVRIVENIINEHKKRKATLKNCKT  253 (490)
Q Consensus       193 ~~G~~~~~~--------~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  253 (490)
                      +||.+.+..        ..+.+.+..+.........           ........+..+.+.++++++.+......  +.
T Consensus       182 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~  259 (482)
T PTZ00404        182 IFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSLFDVIEITQPLYYQYLEHTDKNFKKIKKFIKEKYHEHLKTI--DP  259 (482)
T ss_pred             HhccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CC
Confidence            999876431        2344444444332211100           00111112222333333333322211110  11


Q ss_pred             CCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCCCCc
Q 011227          254 GDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKVNE  330 (490)
Q Consensus       254 ~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~  330 (490)
                      ....|+++.++++..+..   ..+.+++++   ++++||+|||+++++|++++|++||++|+|+++|+++++++++.+++
T Consensus       260 ~~~~dll~~ll~~~~~~~---~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~~~~~  336 (482)
T PTZ00404        260 EVPRDLLDLLIKEYGTNT---DDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRNKVLL  336 (482)
T ss_pred             CCcccHHHHHHHHhccCC---cccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCCCCCc
Confidence            135689999998643211   122223443   78999999999999999999999999999999999999987667899


Q ss_pred             ccccCChhHHHHHHhhcCCCCCCCCCCccccccccee-cceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCC
Q 011227          331 TSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVD  409 (490)
Q Consensus       331 ~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l-~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~  409 (490)
                      +++.+||||+|||+||||++||++...+|.+.+|+++ +||.||||+.|.++.+++||||++|+||++|+||||++..  
T Consensus       337 ~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~--  414 (482)
T PTZ00404        337 SDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD--  414 (482)
T ss_pred             cccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC--
Confidence            9999999999999999999999998668999999999 9999999999999999999999999999999999998642  


Q ss_pred             CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecC
Q 011227          410 YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPY  484 (490)
Q Consensus       410 ~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  484 (490)
                         .+..|+|||+|+|.|+|++||++|+++++++|+++|+|++.++.+   .......+.+++ +.++.+.+++|
T Consensus       415 ---~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~-~~~~~v~~~~R  482 (482)
T PTZ00404        415 ---SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKK---IDETEEYGLTLK-PNKFKVLLEKR  482 (482)
T ss_pred             ---CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCC---CCcccccceeec-CCCceeeeecC
Confidence               346899999999999999999999999999999999999875542   222334455665 66899988877


No 12 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=9.5e-74  Score=559.80  Aligned_cols=445  Identities=30%  Similarity=0.570  Sum_probs=341.0

Q ss_pred             CCCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchh
Q 011227           35 RISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (490)
Q Consensus        35 ~~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~  114 (490)
                      ++.+.||||+++|++|++..+.....+..+.+|+++||++|++++++.++|+|+||+.+++++.++...+..++......
T Consensus        27 ~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~~~~~~~  106 (503)
T PLN02394         27 KKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGDVFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFD  106 (503)
T ss_pred             CcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCCeEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCCCcchHh
Confidence            34578899999999999987733335678999999999999999999999999999999999987766666554433333


Q ss_pred             hhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhc---CCCceehhHHHHHHHHHHHHH
Q 011227          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK---AGSVINLTQNVHSLMYGITSR  191 (490)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~vdl~~~~~~~~~~~i~~  191 (490)
                      .+...+.+.++..+|+.|+++||.+..++|+++.++.+.+.++++++++++.|...   .++.+|+.+.+..+++|+++.
T Consensus       107 ~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~  186 (503)
T PLN02394        107 IFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYR  186 (503)
T ss_pred             HhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHH
Confidence            33323456688888999999999955699999999999999999999999998742   245699999999999999999


Q ss_pred             HhcCCCCCcHH-HHHH----HHHHHHHhhcc--------cch-h----hHHHHHHHH----HH-HHHHHHHHHHHHHhhh
Q 011227          192 AAFGNRSRDQE-AFVA----VIEETTKVISG--------FNI-A----DVETLHQEG----VR-IVENIINEHKKRKATL  248 (490)
Q Consensus       192 ~~~G~~~~~~~-~~~~----~~~~~~~~~~~--------~~~-~----~~~~~~~~~----~~-~~~~~i~~~~~~~~~~  248 (490)
                      ++||.+++..+ ....    ...........        ... .    ...+.....    .+ +...+++++++..+..
T Consensus       187 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  266 (503)
T PLN02394        187 MMFDRRFESEDDPLFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICQDVKERRLALFKDYFVDERKKLMSAK  266 (503)
T ss_pred             HHhCCCcccccchhHHHHHHHHHHHHHHhcccccchhhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999875421 1111    11111111110        000 0    001111111    11 2223444444322111


Q ss_pred             ccCCCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCC
Q 011227          249 KNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT  325 (490)
Q Consensus       249 ~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~  325 (490)
                      . .+.....|+++.++++..++    .++++++..   ++++||+|||+++++|++|+|++||++|++|++||+++++.+
T Consensus       267 ~-~~~~~~~d~l~~ll~~~~~~----~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~v~~~~  341 (503)
T PLN02394        267 G-MDKEGLKCAIDHILEAQKKG----EINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELDTVLGPG  341 (503)
T ss_pred             c-CCcchhhhHHHHHHhccccC----CCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCC
Confidence            0 01113478999999875433    377778765   678999999999999999999999999999999999999876


Q ss_pred             CCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccC
Q 011227          326 GKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLD  405 (490)
Q Consensus       326 ~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~  405 (490)
                      +.++++++.+||||+|||+||||++|++|+..+|.+.+|++++||.||+||.|.++.+++||||++|+||++|+||||++
T Consensus       342 ~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~  421 (503)
T PLN02394        342 NQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLE  421 (503)
T ss_pred             CCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCC
Confidence            67889999999999999999999999999988899999999999999999999999999999999999999999999996


Q ss_pred             CCCC--CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccC-eeeeccCceeEEee
Q 011227          406 HSVD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFG-VTVRRKQDLCMTPI  482 (490)
Q Consensus       406 ~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  482 (490)
                      ++..  .+.....|+|||+|+|+|+|++||++|+++++++|+++|+|++.++.+  .++.....+ ..+..+.+.++++.
T Consensus       422 ~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  499 (503)
T PLN02394        422 EEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS--KIDVSEKGGQFSLHIAKHSTVVFK  499 (503)
T ss_pred             CCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC--cCccccccCceeeccCCCceEEee
Confidence            5321  122456899999999999999999999999999999999999876652  133333343 34446669999999


Q ss_pred             cCCC
Q 011227          483 PYHP  486 (490)
Q Consensus       483 ~r~~  486 (490)
                      ||.+
T Consensus       500 ~r~~  503 (503)
T PLN02394        500 PRSA  503 (503)
T ss_pred             cCCC
Confidence            9974


No 13 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=4.1e-73  Score=552.49  Aligned_cols=427  Identities=19%  Similarity=0.312  Sum_probs=330.5

Q ss_pred             CCCCCCCCCCCCCCccccccccCC----CCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCC
Q 011227           34 NRISNPPPGPWKLPVIGNLYQLAG----SLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPH  109 (490)
Q Consensus        34 ~~~~~~ppgp~~~p~~G~~~~~~~----~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~  109 (490)
                      +++.+.||||+++|++||+..+..    ..++.++.+++++||++|++++++.++|+++||+++++++.++...|+.+..
T Consensus        34 ~~~~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~  113 (490)
T PLN02500         34 QKRFNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGKIYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP  113 (490)
T ss_pred             cCCCCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcccccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc
Confidence            455578999999999999764421    3456778999999999999999999999999999999999987666643322


Q ss_pred             CcchhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhh-hHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHHH
Q 011227          110 FPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS-FQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGI  188 (490)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~  188 (490)
                      .......   +...++..+|+.|+++|+. +.+.|+...++. +.+.+.+.+..+++.|..  ++.+|+.+.+..+++++
T Consensus       114 ~~~~~~~---g~~~~~~~~g~~wr~~Rk~-~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~vd~~~~~~~~~~~v  187 (490)
T PLN02500        114 RSIGGIL---GKWSMLVLVGDMHRDMRSI-SLNFLSHARLRTHLLKEVERHTLLVLDSWKE--NSTFSAQDEAKKFTFNL  187 (490)
T ss_pred             hHHHHHh---CcccccccCCHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEehHHHHHHHHHH
Confidence            1111222   2234566789999999999 468899888887 567777888888887753  45799999999999999


Q ss_pred             HHHHhcCCCCCcH--HHHHHHHHHHHHhhc----ccc---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccH
Q 011227          189 TSRAAFGNRSRDQ--EAFVAVIEETTKVIS----GFN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDL  259 (490)
Q Consensus       189 i~~~~~G~~~~~~--~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l  259 (490)
                      +++++||.+.+..  +++...+..+.....    .++   .....+..+.+.+++.+.++++++.......  .....|+
T Consensus       188 i~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~d~  265 (490)
T PLN02500        188 MAKHIMSMDPGEEETEQLKKEYVTFMKGVVSAPLNFPGTAYRKALKSRATILKFIERKMEERIEKLKEEDE--SVEEDDL  265 (490)
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHHHhhhhcchhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--CCCcchH
Confidence            9999999876432  233333333322211    011   1233455667777788888777654322111  1134689


Q ss_pred             HHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc-----CCCCCCcc
Q 011227          260 VDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH-----RTGKVNET  331 (490)
Q Consensus       260 l~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~-----~~~~~~~~  331 (490)
                      ++.+++..       .+++++++.   ++++||+|||+++++|++++|++||++|+|+++|++++.+     +++.++++
T Consensus       266 l~~ll~~~-------~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~  338 (490)
T PLN02500        266 LGWVLKHS-------NLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWE  338 (490)
T ss_pred             HHHHHhcc-------CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHH
Confidence            99998731       367788776   7899999999999999999999999999999999999863     23458899


Q ss_pred             cccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 011227          332 SIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYK  411 (490)
Q Consensus       332 ~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~  411 (490)
                      ++.+||||+|||+||||++|+++.. +|.+.+|++++||.|||||.|+++++++||||++|+||++|+||||++++...+
T Consensus       339 d~~~lpyl~avikEtlRl~P~~~~~-~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~  417 (490)
T PLN02500        339 DYKKMEFTQCVINETLRLGNVVRFL-HRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGG  417 (490)
T ss_pred             HhccCHHHHHHHHHHHhcCCCccCe-eeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccc
Confidence            9999999999999999999999997 699999999999999999999999999999999999999999999997532211


Q ss_pred             ------CCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeec
Q 011227          412 ------GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  483 (490)
Q Consensus       412 ------~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (490)
                            ..+..|+|||+|+|.|+|++||++|+++++++|+++|+|++.++...    ..  ... +.++.++.|++++
T Consensus       418 ~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~~----~~--~~~-~~~~~~l~~~~~~  488 (490)
T PLN02500        418 SSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQA----FA--FPF-VDFPKGLPIRVRR  488 (490)
T ss_pred             cccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCcc----ee--ccc-ccCCCCceEEEEe
Confidence                  13568999999999999999999999999999999999998765431    11  112 2334588888764


No 14 
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=1.3e-73  Score=549.94  Aligned_cols=435  Identities=28%  Similarity=0.483  Sum_probs=344.5

Q ss_pred             CCCCCCCCCCCCccccccccCCC--CCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCc-c
Q 011227           36 ISNPPPGPWKLPVIGNLYQLAGS--LPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFP-A  112 (490)
Q Consensus        36 ~~~~ppgp~~~p~~G~~~~~~~~--~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~-~  112 (490)
                      ....||||.++|++|+...+...  ....++.++..+||++|+.|++|.++++++||+.+++|+.++.....+.+.+. .
T Consensus        33 ~~~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~  112 (497)
T KOG0157|consen   33 KKKLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYGPIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPES  112 (497)
T ss_pred             HhccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcCchhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHH
Confidence            44678999999999999988433  56677899999999999999999999999999999999976554444444443 2


Q ss_pred             hhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhc-CCCceehhHHHHHHHHHHHHH
Q 011227          113 AQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK-AGSVINLTQNVHSLMYGITSR  191 (490)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~vdl~~~~~~~~~~~i~~  191 (490)
                      ...+  .|. ++++.+|+.|+++||+ ..+.|+.+.++.+...+.+....+...+... .++.+|+.+.++++++|+++.
T Consensus       113 ~~~~--lG~-gll~~~g~~W~~~Rk~-~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~  188 (497)
T KOG0157|consen  113 LKPW--LGD-GLLFSDGEKWHKHRKL-LTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICK  188 (497)
T ss_pred             HHHH--hcC-ccccCCchHHHHHHhh-ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHH
Confidence            2122  244 5566669999999999 6899999999999998888888877777643 334499999999999999999


Q ss_pred             HhcCCCC-C----cHHHHHHHHHHHHHhhccc---c-----------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 011227          192 AAFGNRS-R----DQEAFVAVIEETTKVISGF---N-----------IADVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (490)
Q Consensus       192 ~~~G~~~-~----~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (490)
                      ++||... +    ...++...+......+...   +           .....++.+.+.+.++++|+++++.....+..+
T Consensus       189 ~~~G~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~~~~~  268 (497)
T KOG0157|consen  189 TAMGPESLDAEGPELFEYVQAFDDLTELISKRINLPLGTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKEGSGE  268 (497)
T ss_pred             HhcCCccccccCCcccHHHHHHHHHHHHHHHHHcCchhhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            9999222 1    1224555555433322111   1           112256778888888999988887655433221


Q ss_pred             CCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCC-CC
Q 011227          253 TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTG-KV  328 (490)
Q Consensus       253 ~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~-~~  328 (490)
                      .....|+++.+....+     ..++++++..   ++++||+|||+++++|++++|+.||++|+++++|+++++++.. ..
T Consensus       269 ~~~~~d~L~~~~~~~~-----~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~  343 (497)
T KOG0157|consen  269 EKKRLDFLDTLLLEED-----KPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKW  343 (497)
T ss_pred             cchhhhHHHHHHHhcc-----CCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCC
Confidence            1246788886333222     2477777776   8899999999999999999999999999999999999997543 23


Q ss_pred             CcccccCChhHHHHHHhhcCCCCCCCCCCccccccccee-cceecCCCCEEEeccccccCCCCCCC-CCCCCCcccccCC
Q 011227          329 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGRDPEYWT-EPESFIPERFLDH  406 (490)
Q Consensus       329 ~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l-~g~~Ip~g~~v~~~~~~~~~d~~~~~-~p~~F~P~Rf~~~  406 (490)
                      ......+|+||++||+||||||||+|+.. |.+.+|+++ +||.||||+.|.++++++|||+++|+ ||++||||||+++
T Consensus       344 ~~~~~~~m~yl~~vi~EsLRLyppvp~~~-R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~  422 (497)
T KOG0157|consen  344 EVEKLDQMKYLEMVIKESLRLYPPVPLVA-RKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDG  422 (497)
T ss_pred             ChhhhhhhHHHHHHHHHHhccCCCCchhh-cccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCC
Confidence            33333369999999999999999999995 999999999 58999999999999999999999995 9999999999976


Q ss_pred             CCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCC
Q 011227          407 SVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       407 ~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  485 (490)
                      ......+++.|+|||+|+|.|+|++||++|+++++++|+++|+|++..+..     .......+++++.++.|+++||.
T Consensus       423 ~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~-----~~~~~~~~l~~~~gl~v~~~~r~  496 (497)
T KOG0157|consen  423 EEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK-----PKPVPELTLRPKNGLKVKLRPRG  496 (497)
T ss_pred             CCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC-----ceeeeEEEEEecCCeEEEEEeCC
Confidence            443344678999999999999999999999999999999999999876642     33456788999999999999986


No 15 
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=1.9e-73  Score=558.91  Aligned_cols=436  Identities=21%  Similarity=0.373  Sum_probs=339.3

Q ss_pred             CCCCCCCCCCCCccccccccCC------------------CCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHH
Q 011227           36 ISNPPPGPWKLPVIGNLYQLAG------------------SLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVM   97 (490)
Q Consensus        36 ~~~~ppgp~~~p~~G~~~~~~~------------------~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il   97 (490)
                      ..+.||||+++|++||+..+..                  .+....+.+|+++||++|++++|+.++|+++||+++++++
T Consensus        40 ~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~v~~il  119 (516)
T PLN02290         40 ERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGKRFIYWNGTEPRLCLTETELIKELL  119 (516)
T ss_pred             HHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCCeEEEccCCccEEEECCHHHHHHHH
Confidence            3456899999999999877621                  1223357889999999999999999999999999999999


Q ss_pred             HhcCcccCCCCCCcchhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhc---CCCc
Q 011227           98 KTHDVVFASRPHFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK---AGSV  174 (490)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~  174 (490)
                      .++.. +..++...........+ .+++..+|+.|+++||. +.+.|+.++++.+.+.+.++++.+++.|.+.   ++++
T Consensus       120 ~~~~~-~~~r~~~~~~~~~~~~g-~~l~~~~g~~Wk~~Rk~-~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~  196 (516)
T PLN02290        120 TKYNT-VTGKSWLQQQGTKHFIG-RGLLMANGADWYHQRHI-AAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTE  196 (516)
T ss_pred             hcCCC-CCCCcchhhhHHHHHhc-CCccccCchHHHHHHhh-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence            87633 43443221111111113 34667789999999999 5788999999999999999999999999742   2357


Q ss_pred             eehhHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc------ccch---------hhHHHHHHHHHHHHHHHHH
Q 011227          175 INLTQNVHSLMYGITSRAAFGNRSRDQEAFVAVIEETTKVIS------GFNI---------ADVETLHQEGVRIVENIIN  239 (490)
Q Consensus       175 vdl~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~~~~~~~~~~~i~  239 (490)
                      +|+.+.+..++++++++++||.+++..+++...+..+.....      ....         .......+.+.+++.+.++
T Consensus       197 vd~~~~~~~~~~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~i~  276 (516)
T PLN02290        197 VEIGEYMTRLTADIISRTEFDSSYEKGKQIFHLLTVLQRLCAQATRHLCFPGSRFFPSKYNREIKSLKGEVERLLMEIIQ  276 (516)
T ss_pred             EEhHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHhhhhhcCchhhhCCChhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987654444444433322111      0010         0112334556667777777


Q ss_pred             HHHHHHhhhccCCCCCCccHHHHHHhhhcCC-CCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHH
Q 011227          240 EHKKRKATLKNCKTGDDEDLVDVLLKIQGHG-DLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQ  315 (490)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~-~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~  315 (490)
                      ++++.......  .....|+++.+++..... .....++.+++..   ++++||+|||+++++|++++|++||++|+|++
T Consensus       277 ~~~~~~~~~~~--~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P~vq~kl~  354 (516)
T PLN02290        277 SRRDCVEIGRS--SSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVR  354 (516)
T ss_pred             HHHHHhhcccC--CCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            76654322111  113578999999764322 1122366777765   78899999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCC-CC
Q 011227          316 AEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYW-TE  394 (490)
Q Consensus       316 ~Ei~~~~~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~-~~  394 (490)
                      +||+++++++ .++++++++||||+|||+||||++|+++.+ +|.+.+|++++||.|||||.|+++.+++||||++| +|
T Consensus       355 ~Ei~~v~~~~-~~~~~~l~~lpYl~avi~EtlRl~p~~~~~-~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~d  432 (516)
T PLN02290        355 AEVAEVCGGE-TPSVDHLSKLTLLNMVINESLRLYPPATLL-PRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKD  432 (516)
T ss_pred             HHHHHHhCCC-CCCHHHHhcChHHHHHHHHHHHcCCCcccc-ceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCC
Confidence            9999999864 789999999999999999999999999975 79999999999999999999999999999999999 89


Q ss_pred             CCCCCcccccCCCCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeecc
Q 011227          395 PESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRK  474 (490)
Q Consensus       395 p~~F~P~Rf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (490)
                      |++|+||||++...   ..+..|+|||+|+|+|+|++||++|++++++.|+++|+|++.++.+     .....++++.|+
T Consensus       433 P~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~-----~~~~~~~~~~p~  504 (516)
T PLN02290        433 ANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR-----HAPVVVLTIKPK  504 (516)
T ss_pred             hhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc-----cCccceeeecCC
Confidence            99999999995421   1235799999999999999999999999999999999999876532     111235678899


Q ss_pred             CceeEEeecCCC
Q 011227          475 QDLCMTPIPYHP  486 (490)
Q Consensus       475 ~~~~~~~~~r~~  486 (490)
                      .++.+++++|.+
T Consensus       505 ~~~~~~~~~~~~  516 (516)
T PLN02290        505 YGVQVCLKPLNP  516 (516)
T ss_pred             CCCeEEEEeCCC
Confidence            999999999864


No 16 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=2.6e-71  Score=535.84  Aligned_cols=428  Identities=26%  Similarity=0.471  Sum_probs=337.6

Q ss_pred             CCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhhhccC
Q 011227           40 PPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILSYN  119 (490)
Q Consensus        40 ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~~~~~  119 (490)
                      ||||+++|++||++.+...+++..+.+|+++||++|++++++.++++|+||+++++++.++...|+.++.......... 
T Consensus         1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~~~~~~~~~-   79 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGPIYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLSKALTVLTR-   79 (466)
T ss_pred             CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChhhHHHHHhc-
Confidence            6899999999999888555688999999999999999999999999999999999999988777776654333232222 


Q ss_pred             CceEEEc-cCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh----cCCCceehhHHHHHHHHHHHHHHhc
Q 011227          120 YRDIIFS-SYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS----KAGSVINLTQNVHSLMYGITSRAAF  194 (490)
Q Consensus       120 ~~~~~~~-~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~----~~~~~vdl~~~~~~~~~~~i~~~~~  194 (490)
                      ....++. .+|+.|+++||.+..++++...++.+.+.+.+.++.+++.+..    ..+++||+.+.++.+++++++.++|
T Consensus        80 ~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~f  159 (466)
T PLN02655         80 DKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQAL  159 (466)
T ss_pred             CCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHh
Confidence            1223444 4589999999987888999888888888888888887777752    2467899999999999999999999


Q ss_pred             CCCCCcH------------HHHHHHHHHHHHhhcccch------------hhHHHH----HHHHHHHHHHHHHHHHHHHh
Q 011227          195 GNRSRDQ------------EAFVAVIEETTKVISGFNI------------ADVETL----HQEGVRIVENIINEHKKRKA  246 (490)
Q Consensus       195 G~~~~~~------------~~~~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~i~~~~~~~~  246 (490)
                      |.+.+..            +.+...+..+........+            ..+.+.    .....+++.++++++++...
T Consensus       160 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  239 (466)
T PLN02655        160 GEDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLSWIPNKSFETRVQTTEFRRTAVMKALIKQQKKRIA  239 (466)
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9875431            1222233333222211100            001111    12233455556655554322


Q ss_pred             hhccCCCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc
Q 011227          247 TLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH  323 (490)
Q Consensus       247 ~~~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~  323 (490)
                      ..     ....|+++.++....      .++++++..   ++++||+|||+++++|++++|++||++|+++++||+++++
T Consensus       240 ~~-----~~~~d~l~~ll~~~~------~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~  308 (466)
T PLN02655        240 RG-----EERDCYLDFLLSEAT------HLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCG  308 (466)
T ss_pred             CC-----CCcccHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhC
Confidence            11     124589999997642      377888876   7889999999999999999999999999999999999988


Q ss_pred             CCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccc
Q 011227          324 RTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERF  403 (490)
Q Consensus       324 ~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf  403 (490)
                      ++. ++++++.+||||+||++||||++||++...+|.+.+|++++||.||||+.|+++.+++||||++|+||++|+||||
T Consensus       309 ~~~-~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~  387 (466)
T PLN02655        309 DER-VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERF  387 (466)
T ss_pred             CCC-CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCcccc
Confidence            644 8999999999999999999999999999878999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeec
Q 011227          404 LDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  483 (490)
Q Consensus       404 ~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (490)
                      +++.... .....++|||+|+|.|||++||+.++++++++|+.+|+|++.++..    +.....++++.++.++.|++++
T Consensus       388 ~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  462 (466)
T PLN02655        388 LGEKYES-ADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE----EKEDTVQLTTQKLHPLHAHLKP  462 (466)
T ss_pred             CCCCccc-CCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc----cccchhheeEeecCCcEEEEee
Confidence            9754321 1346899999999999999999999999999999999999876532    1223456777888899999988


Q ss_pred             CC
Q 011227          484 YH  485 (490)
Q Consensus       484 r~  485 (490)
                      |.
T Consensus       463 r~  464 (466)
T PLN02655        463 RG  464 (466)
T ss_pred             cC
Confidence            75


No 17 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=4.4e-70  Score=530.87  Aligned_cols=452  Identities=26%  Similarity=0.454  Sum_probs=337.2

Q ss_pred             hcccccCCCCCCCCCCCCCCccccccccCCCCCc-hhHHHHhhhc-CCeEEEecCCccEEEecCHHHHHHHHHhcCcccC
Q 011227           28 KRSQTNNRISNPPPGPWKLPVIGNLYQLAGSLPH-HGLRDLSKKY-GPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFA  105 (490)
Q Consensus        28 ~~~~~~~~~~~~ppgp~~~p~~G~~~~~~~~~~~-~~~~~~~~~y-G~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~  105 (490)
                      +.........++||||.++|++||++.+....+. .++.++.++| |++|++++|+.++|+|+||+.+++++.++...|+
T Consensus        30 ~~~~~~~~~~~~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~  109 (534)
T PLN03018         30 RPSKTKDRSRQLPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLA  109 (534)
T ss_pred             hhcccCCCCCCCCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhc
Confidence            3333444455689999999999999886333332 4566777766 7999999999999999999999999998877787


Q ss_pred             CCCCCcchhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHH
Q 011227          106 SRPHFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHS  183 (490)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~  183 (490)
                      .++..........++.+.++..+|+.|+++|+.+...+++......+......+++++++.+.+  ..++++|+.+.+..
T Consensus       110 ~rp~~~~~~~l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~  189 (534)
T PLN03018        110 DRPQLSIMETIGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRV  189 (534)
T ss_pred             CCCCchhhhhhccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHH
Confidence            7765443333322223455555699999999996544556655566666666778889888874  24567999999999


Q ss_pred             HHHHHHHHHhcCCCCCc-------HHH----HHHHHHHHHH---hhcccch----h---h----------HHHHHHHHHH
Q 011227          184 LMYGITSRAAFGNRSRD-------QEA----FVAVIEETTK---VISGFNI----A---D----------VETLHQEGVR  232 (490)
Q Consensus       184 ~~~~~i~~~~~G~~~~~-------~~~----~~~~~~~~~~---~~~~~~~----~---~----------~~~~~~~~~~  232 (490)
                      +++++++.++||.++..       ...    +.........   .......    .   .          .....+.+.+
T Consensus       190 ~t~~vi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  269 (534)
T PLN03018        190 YGYAVTMRMLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRS  269 (534)
T ss_pred             HHHHHHHHHHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHH
Confidence            99999999999987531       111    1111111111   1111100    0   0          1112233456


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcH
Q 011227          233 IVENIINEHKKRKATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPR  309 (490)
Q Consensus       233 ~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~  309 (490)
                      ++.+.++++++......  ......|+++.+++..++.+ ...+++++++.   ++++||+|||+++++|++++|+.||+
T Consensus       270 ~~~~~i~~~~~~~~~~~--~~~~~~d~l~~ll~~~~~~~-~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~  346 (534)
T PLN03018        270 YNNPIIDERVELWREKG--GKAAVEDWLDTFITLKDQNG-KYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPE  346 (534)
T ss_pred             HHHHHHHHHHHHhhhcc--CCCCcccHHHHHHHhhcccC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH
Confidence            66667776654322111  00124689999997653321 11378888877   78899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCC
Q 011227          310 VMKKAQAEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDP  389 (490)
Q Consensus       310 ~~~~l~~Ei~~~~~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~  389 (490)
                      +|+++++||++++++++.++.+++.+||||+|||+||||++|+++...+|.+.+|++++||.||||+.|+++.+++||||
T Consensus       347 ~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp  426 (534)
T PLN03018        347 ILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNP  426 (534)
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCc
Confidence            99999999999998777789999999999999999999999999988779999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcccccCCCCCC-----CCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcc
Q 011227          390 EYWTEPESFIPERFLDHSVDY-----KGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMT  464 (490)
Q Consensus       390 ~~~~~p~~F~P~Rf~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~  464 (490)
                      ++|+||++|+||||++++...     ...+..|+|||+|+|.|+|++||.+|+++++++|+++|+|++.++..  .++..
T Consensus       427 ~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~  504 (534)
T PLN03018        427 KIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFG--PLSLE  504 (534)
T ss_pred             ccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCC--CCCcc
Confidence            999999999999999653221     12456799999999999999999999999999999999999876531  23333


Q ss_pred             cccCeeeeccCceeEEeecCC
Q 011227          465 EAFGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~r~  485 (490)
                      ...+.+. .+.++.|+++||.
T Consensus       505 ~~~~~~~-~p~~~~v~~~~R~  524 (534)
T PLN03018        505 EDDASLL-MAKPLLLSVEPRL  524 (534)
T ss_pred             cccccee-cCCCeEEEEEecc
Confidence            3335444 4569999999994


No 18 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=8.1e-71  Score=531.99  Aligned_cols=418  Identities=20%  Similarity=0.310  Sum_probs=327.6

Q ss_pred             CCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhhh
Q 011227           37 SNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQIL  116 (490)
Q Consensus        37 ~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~~  116 (490)
                      ++.||||+++|++||+..+ .+++..++++++++||++|++++++.++++++||+.+++++.++...+..+........+
T Consensus        30 ~~~ppgp~~~P~~G~~~~~-~~~~~~~~~~~~~~yG~i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~~l  108 (463)
T PLN02774         30 KGLPPGTMGWPLFGETTEF-LKQGPDFMKNQRLRYGSFFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYPQSMLDIL  108 (463)
T ss_pred             CCCCCCCCCCCchhhHHHH-HHhhHHHHHHHHHHhccCccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCCHHHHHHh
Confidence            3678899999999999877 456778999999999999999999999999999999999998766555332211111221


Q ss_pred             ccCCceEEEccCChhHHHHHhhhHHhhccHHHHhh-hHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHhcC
Q 011227          117 SYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS-FQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAAFG  195 (490)
Q Consensus       117 ~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~i~~~~~G  195 (490)
                         +.+++++.+|+.|+.+|+. +.+.|++..++. +.+.+.+.++++++.|.  .++++|+.+.+..+++++++.++||
T Consensus       109 ---g~~~~~~~~g~~w~~~R~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~g  182 (463)
T PLN02774        109 ---GTCNIAAVHGSTHRYMRGS-LLSLISPTMIRDHLLPKIDEFMRSHLSGWD--GLKTIDIQEKTKEMALLSALKQIAG  182 (463)
T ss_pred             ---CccchhhcCCHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHHHHhhC--CCCCEEeeHHHHHHHHHHHHHHHcC
Confidence               3345666789999999999 478899988876 78888888888888875  3357999999999999999999999


Q ss_pred             CCCCcH-HHHHHHHHHHHHhhcc----cc---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccHHHHHHhhh
Q 011227          196 NRSRDQ-EAFVAVIEETTKVISG----FN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLLKIQ  267 (490)
Q Consensus       196 ~~~~~~-~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ll~~~  267 (490)
                      ...+.. +++...+..+......    .+   .....++.+.+.+++.+.++++++..        ...+|+++.+++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~~--------~~~~d~l~~ll~~~  254 (463)
T PLN02774        183 TLSKPISEEFKTEFFKLVLGTLSLPIDLPGTNYRSGVQARKNIVRMLRQLIQERRASG--------ETHTDMLGYLMRKE  254 (463)
T ss_pred             CCChHHHHHHHHHHHHHhcccccCCcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhcC--------CCcccHHHHHHhCc
Confidence            875432 2233333222211111    11   11223445556666666666654321        13579999998743


Q ss_pred             cCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcC---CCCCCcccccCChhHHH
Q 011227          268 GHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR---TGKVNETSIDEMKFLKL  341 (490)
Q Consensus       268 ~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~l~~l~~l~a  341 (490)
                      .++   ..++++++..   ++++||+|||+++++|++++|++||++|+++++|++++.+.   ++.++++++.+||||+|
T Consensus       255 ~~~---~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a  331 (463)
T PLN02774        255 GNR---YKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRA  331 (463)
T ss_pred             cCC---CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHH
Confidence            221   2478888877   77899999999999999999999999999999999999863   35688999999999999


Q ss_pred             HHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCCCCCccccccC
Q 011227          342 VVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNFEYIPFG  421 (490)
Q Consensus       342 ~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~~~~~~~~~Fg  421 (490)
                      ||+|+||++|+++.. +|.+.+|++++||.||||+.|+++++.+||||++|+||++|+||||++++..   ....|+|||
T Consensus       332 ~ikE~lRl~P~v~~~-~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG  407 (463)
T PLN02774        332 VIFETSRLATIVNGV-LRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFG  407 (463)
T ss_pred             HHHHHHhcCCCCCCc-ccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CCccccCcC
Confidence            999999999999977 5999999999999999999999999999999999999999999999965421   123699999


Q ss_pred             CCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeec
Q 011227          422 AGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  483 (490)
Q Consensus       422 ~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (490)
                      +|+|.|||++||++|++++++.|+++|+|++.++.+.   .  .. . ++.|+.++.+++.|
T Consensus       408 ~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~---~--~~-~-~~~p~~g~~~~~~~  462 (463)
T PLN02774        408 GGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKL---M--KF-P-RVEAPNGLHIRVSP  462 (463)
T ss_pred             CCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCcc---c--cC-C-CCCCCCCceEEeee
Confidence            9999999999999999999999999999999765431   1  11 1 23367888888775


No 19 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.2e-70  Score=496.61  Aligned_cols=434  Identities=23%  Similarity=0.380  Sum_probs=352.9

Q ss_pred             CCCCCCCCCCCCccccccc---cCCCCCchhHHHHhhhcCCeEEEe-cCCccEEEecCHHHHHHHHHhcCcccCCCC-CC
Q 011227           36 ISNPPPGPWKLPVIGNLYQ---LAGSLPHHGLRDLSKKYGPLMLLQ-LGEVPTIIVSSPEVAKEVMKTHDVVFASRP-HF  110 (490)
Q Consensus        36 ~~~~ppgp~~~p~~G~~~~---~~~~~~~~~~~~~~~~yG~v~~~~-~~~~~~vvv~~p~~v~~il~~~~~~~~~~~-~~  110 (490)
                      +...+|||..+|++|..+.   ....+.|+.....+++||+||+.. +|+...|.+.+|++++.++++++. +..++ ..
T Consensus        48 ~~~~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~I~~~~~~G~~~~V~v~~p~d~E~v~r~EG~-~P~Rp~~~  126 (519)
T KOG0159|consen   48 PFEEIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGPIFREGMLGRVDLVHVYNPDDVEKVFRNEGK-YPFRPLLI  126 (519)
T ss_pred             ChhhcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCceeeeccCCCCCeEEeeCHHHHHHHHhcCCC-CCCccccc
Confidence            4457899999999999873   323467888999999999999999 888999999999999999998763 33343 11


Q ss_pred             cc--hhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhc-----CCCceehhHHHHH
Q 011227          111 PA--AQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSK-----AGSVINLTQNVHS  183 (490)
Q Consensus       111 ~~--~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-----~~~~vdl~~~~~~  183 (490)
                      ..  ...-.+++..++++.+|++|.+.|..++..++.++.++.|.+.+++..++++..++..     +..+.|+.+.+.+
T Consensus       127 ~~w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~  206 (519)
T KOG0159|consen  127 EPWVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYR  206 (519)
T ss_pred             chhhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            11  1111234667789999999999999999999999999999999999999999998732     3457899999999


Q ss_pred             HHHHHHHHHhcCCCCCc--------HHHHHHHHHHHHHhhccc-------------chhhHHHHHHHHHHHHHHHHHHHH
Q 011227          184 LMYGITSRAAFGNRSRD--------QEAFVAVIEETTKVISGF-------------NIADVETLHQEGVRIVENIINEHK  242 (490)
Q Consensus       184 ~~~~~i~~~~~G~~~~~--------~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~~  242 (490)
                      ++++.|+.++||.+++.        .+.|++++..++......             .+.++.++.+.+.+.+.+.|+...
T Consensus       207 wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~p~l~r~~~t~~wk~~~~~~D~i~~~~~~~Id~~l  286 (519)
T KOG0159|consen  207 WSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLMPSLWRYFPTKVWKDFVRAWDQIFDVGDKYIDNAL  286 (519)
T ss_pred             HHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhcchHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998753        235666666665443221             123335666667777778888777


Q ss_pred             HHHhhhccCCCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 011227          243 KRKATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVR  319 (490)
Q Consensus       243 ~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~  319 (490)
                      +..+....... ...+.+-.++...+       ++.+++..   ++++||.|||+.++.|+||+|++||++|++|++|+.
T Consensus       287 ~~l~~~~~~~~-~~~~~l~~~L~~~~-------l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~  358 (519)
T KOG0159|consen  287 EELEKQDSAGS-EYTGSLLELLLRKE-------LSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEIL  358 (519)
T ss_pred             HHHHhcccccc-chhHHHHHHHHHcc-------CCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            76654332211 22333333333322       45555544   899999999999999999999999999999999999


Q ss_pred             HhhcC-CCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCC
Q 011227          320 EVFHR-TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESF  398 (490)
Q Consensus       320 ~~~~~-~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F  398 (490)
                      ++... +..++.+++.+||||.|||+||+||||.+|+.. |...+|.+++||.|||||.|.++.+.+.+||+.|++|++|
T Consensus       359 ~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~-R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F  437 (519)
T KOG0159|consen  359 AVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNG-RVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEF  437 (519)
T ss_pred             hhCCCcccccchHHHhhCHHHHHHHHhhhceeccccccc-cccchhceeccceecCCCeEEEeehhhccChhhCCCcccc
Confidence            99987 577899999999999999999999999999996 9999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCcee
Q 011227          399 IPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLC  478 (490)
Q Consensus       399 ~P~Rf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (490)
                      +||||++++. ...++..++|||.|+|+|+|+.+|++||.++|++|+++|+++..+..+     .......++.|..++.
T Consensus       438 ~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~p-----v~~~~~~il~P~~~l~  511 (519)
T KOG0159|consen  438 LPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEP-----VEYVYRFILVPNRPLR  511 (519)
T ss_pred             Chhhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCCC-----ccceeEEEEcCCCCcc
Confidence            9999999873 245789999999999999999999999999999999999999876532     4445566788899999


Q ss_pred             EEeecCC
Q 011227          479 MTPIPYH  485 (490)
Q Consensus       479 ~~~~~r~  485 (490)
                      +++++|.
T Consensus       512 f~f~~r~  518 (519)
T KOG0159|consen  512 FKFRPRN  518 (519)
T ss_pred             eeeeeCC
Confidence            9999885


No 20 
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=3.5e-70  Score=535.41  Aligned_cols=434  Identities=20%  Similarity=0.333  Sum_probs=326.8

Q ss_pred             CCCCCCCCCccccccccCCCCCchhHHHHhhhc---CCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhh
Q 011227           39 PPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKY---GPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI  115 (490)
Q Consensus        39 ~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~y---G~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~  115 (490)
                      .+|||.++|++||++.+.. + +..+.+|.++|   |++|.+++++.++++++||+.+++|+.++...+.+...+.  ..
T Consensus        31 ~~pgp~~~p~~G~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~--~~  106 (516)
T PLN03195         31 NRKGPKSWPIIGAALEQLK-N-YDRMHDWLVEYLSKDRTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYH--SY  106 (516)
T ss_pred             ccCCCCCCCeecchHHHHh-c-cchHHHHHHHHhccCCcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHH--HH
Confidence            3689999999999876522 2 44567777777   8999999999999999999999999987644454332211  11


Q ss_pred             hccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHH-HHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHHHHH
Q 011227          116 LSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIR-EAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRA  192 (490)
Q Consensus       116 ~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~-~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i~~~  192 (490)
                      ......+++++.+|+.|+++||. +.+.|+.++++.+.+.+ .+.++.+++.+..  ..++++|+.+++..+++|+++.+
T Consensus       107 ~~~~~g~~l~~~~g~~w~~~Rr~-l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~  185 (516)
T PLN03195        107 MEVLLGDGIFNVDGELWRKQRKT-ASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKV  185 (516)
T ss_pred             HHHHhcCeeeccCcHHHHHHHHh-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHH
Confidence            11111234677899999999999 58889999999998875 6667777776753  34678999999999999999999


Q ss_pred             hcCCCCCcH------HHHHHHHHHHHHh-----hcccc-h---------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 011227          193 AFGNRSRDQ------EAFVAVIEETTKV-----ISGFN-I---------ADVETLHQEGVRIVENIINEHKKRKATLKNC  251 (490)
Q Consensus       193 ~~G~~~~~~------~~~~~~~~~~~~~-----~~~~~-~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  251 (490)
                      +||.+++..      ..+...+......     ..... +         ....+..+.+.+++.+.++++++........
T Consensus       186 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  265 (516)
T PLN03195        186 GFGVEIGTLSPSLPENPFAQAFDTANIIVTLRFIDPLWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEARKS  265 (516)
T ss_pred             HhCCCccccccCCCccHHHHHHHHHHHHHHHHHhcchhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            999876531      2343333322211     11100 0         0112344556666667777665543211110


Q ss_pred             CCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcC----
Q 011227          252 KTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR----  324 (490)
Q Consensus       252 ~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~----  324 (490)
                      ......|+++.+++..+++  ...++++++..   ++++||+|||+++++|++|+|++||++|+||++|++++.++    
T Consensus       266 ~~~~~~d~l~~ll~~~~~~--~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~  343 (516)
T PLN03195        266 GKKVKHDILSRFIELGEDP--DSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKE  343 (516)
T ss_pred             cccccccHHHHHHhccCCC--CCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccccc
Confidence            1113568999999754322  13478888877   78899999999999999999999999999999999988643    


Q ss_pred             ----------------CCCCCcccccCChhHHHHHHhhcCCCCCCCCCCccccccccee-cceecCCCCEEEeccccccC
Q 011227          325 ----------------TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGR  387 (490)
Q Consensus       325 ----------------~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l-~g~~Ip~g~~v~~~~~~~~~  387 (490)
                                      ++.++++++.+||||+|||+||||++||++... |.+.+|..+ +|+.|||||.|+++.+++||
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~-r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~  422 (516)
T PLN03195        344 EDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDP-KGILEDDVLPDGTKVKAGGMVTYVPYSMGR  422 (516)
T ss_pred             ccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchh-hhhccCcCcCCCcEECCCCEEEEehHhhcc
Confidence                            245789999999999999999999999999984 767666555 99999999999999999999


Q ss_pred             CCCCC-CCCCCCCcccccCCCCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccc
Q 011227          388 DPEYW-TEPESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEA  466 (490)
Q Consensus       388 d~~~~-~~p~~F~P~Rf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~  466 (490)
                      ||++| +||++|+||||+++.......++.|+|||+|+|+|+|++||++|++++++.|+++|++++.++.+     ....
T Consensus       423 dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~-----~~~~  497 (516)
T PLN03195        423 MEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHP-----VKYR  497 (516)
T ss_pred             ChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCc-----ceee
Confidence            99999 99999999999964321123456799999999999999999999999999999999999865432     2223


Q ss_pred             cCeeeeccCceeEEeecCC
Q 011227          467 FGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       467 ~~~~~~~~~~~~~~~~~r~  485 (490)
                      ...++.++.++.|++++|.
T Consensus       498 ~~~~~~~~~~~~v~~~~r~  516 (516)
T PLN03195        498 MMTILSMANGLKVTVSRRS  516 (516)
T ss_pred             eeeEEecCCCEEEEEEeCC
Confidence            3456778889999999874


No 21 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=1.1e-69  Score=522.87  Aligned_cols=430  Identities=21%  Similarity=0.308  Sum_probs=334.9

Q ss_pred             CCCCCCCCCCCCCCccccccccC----CCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCC
Q 011227           34 NRISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPH  109 (490)
Q Consensus        34 ~~~~~~ppgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~  109 (490)
                      +++.+.||||.++|++||+..+.    ..+++.++.+++++||+||++++++.++|+++||++++++|.++...++.+..
T Consensus         3 ~~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~~~   82 (452)
T PLN03141          3 KKKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPAYP   82 (452)
T ss_pred             CCCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccCCCCEEEEeCHHHhhHHHhCCCCeeeccCc
Confidence            45567889999999999988763    23678899999999999999999999999999999999999987766654422


Q ss_pred             CcchhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhh-hHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHHH
Q 011227          110 FPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS-FQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGI  188 (490)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~  188 (490)
                      .......   +.++++..+|+.|+++|++ +.+.|+...+.. +.+.+.+.++++++.|.  .++.+|+.+.+..+++++
T Consensus        83 ~~~~~l~---g~~~~~~~~g~~wr~~r~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v  156 (452)
T PLN03141         83 KSLTELM---GKSSILLINGSLQRRVHGL-IGAFLKSPHLKAQITRDMERYVSESLDSWR--DDPPVLVQDETKKIAFEV  156 (452)
T ss_pred             hhHHHHh---CcccccccCcHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHHHHHhcc--CCCCEEhHHHHHHHHHHH
Confidence            1111122   3345777889999999999 567777666655 45666667776776653  356799999999999999


Q ss_pred             HHHHhcCCCCCcH-HHHHHHHHHHHHhhcc----cc---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccHH
Q 011227          189 TSRAAFGNRSRDQ-EAFVAVIEETTKVISG----FN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLV  260 (490)
Q Consensus       189 i~~~~~G~~~~~~-~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll  260 (490)
                      +++++||.+.+.. +++...+..+......    .+   .....++.+++.+++...+++++..........+....|++
T Consensus       157 i~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~d~l  236 (452)
T PLN03141        157 LVKALISLEPGEEMEFLKKEFQEFIKGLMSLPIKLPGTRLYRSLQAKKRMVKLVKKIIEEKRRAMKNKEEDETGIPKDVV  236 (452)
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHhhhHHhCccCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCChhhHH
Confidence            9999999876432 2232333322221111    11   11223456777888888888776543221100001246899


Q ss_pred             HHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc----CCCCCCcccc
Q 011227          261 DVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH----RTGKVNETSI  333 (490)
Q Consensus       261 ~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~----~~~~~~~~~l  333 (490)
                      +.+++...     ..+++++++.   ++++||+|||+.+++|++++|++||++|+++++|++++.+    .+..++.+++
T Consensus       237 ~~ll~~~~-----~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~  311 (452)
T PLN03141        237 DVLLRDGS-----DELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDY  311 (452)
T ss_pred             HHHHhcCC-----CCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHH
Confidence            99887542     2377788777   7889999999999999999999999999999999998863    2345788999


Q ss_pred             cCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCCCC
Q 011227          334 DEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGT  413 (490)
Q Consensus       334 ~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~~~  413 (490)
                      .+||||+|||+|+||++|+++.. +|.+.+|++++||.||||+.|+++++++|||+++|+||++|+||||++++.    .
T Consensus       312 ~~lpyl~avi~E~lRl~p~~~~~-~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~  386 (452)
T PLN03141        312 MSLPFTQNVITETLRMGNIINGV-MRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----N  386 (452)
T ss_pred             hccHHHHHHHHHHHhccCCcCCc-ceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----C
Confidence            99999999999999999999866 799999999999999999999999999999999999999999999997532    3


Q ss_pred             CccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCCCC
Q 011227          414 NFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHPS  487 (490)
Q Consensus       414 ~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  487 (490)
                      +..|+|||+|+|.|+|++||.+|+++++++|+++|+|++.++..     .   ...+++++.++.|.+++|.-|
T Consensus       387 ~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~  452 (452)
T PLN03141        387 NSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI-----V---NFPTVRMKRKLPIWVTRIDDS  452 (452)
T ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe-----e---ecccccCCCCceEEEEeCCCC
Confidence            56899999999999999999999999999999999999765421     1   123678888999999999644


No 22 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=1.4e-69  Score=522.94  Aligned_cols=416  Identities=21%  Similarity=0.356  Sum_probs=330.9

Q ss_pred             CCCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchh
Q 011227           35 RISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (490)
Q Consensus        35 ~~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~  114 (490)
                      +....||||+++|++||+..+...+++.++.+++++||++|++++++.++|+++||+.+++++.++...+.  +......
T Consensus        32 ~~~~~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~--~~~~~~~  109 (463)
T PLN02196         32 TKLPLPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGSVFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK--PTFPASK  109 (463)
T ss_pred             CCCCCCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhhhheeeecCCceEEEcCHHHHHHHHhCCCCccc--ccCchHH
Confidence            34567899999999999877646688999999999999999999999999999999999999987765553  2222111


Q ss_pred             hhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHhc
Q 011227          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAAF  194 (490)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~i~~~~~  194 (490)
                      ... .+..+++..+|+.|+++||. +.+.|++++++.+.+.+.+.++++++.|.   ++.+|+.++++.+++++++.++|
T Consensus       110 ~~~-~g~~~l~~~~g~~w~~~Rk~-l~~~f~~~~l~~~~~~i~~~~~~~~~~~~---~~~v~~~~~~~~~~~~v~~~~~f  184 (463)
T PLN02196        110 ERM-LGKQAIFFHQGDYHAKLRKL-VLRAFMPDAIRNMVPDIESIAQESLNSWE---GTQINTYQEMKTYTFNVALLSIF  184 (463)
T ss_pred             HHH-cCcccccccCcHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHcCC---CCeEEeHHHHHHHHHHHHHHHHc
Confidence            111 23446677899999999999 57889999999999999999999998874   45799999999999999999999


Q ss_pred             CCCCCc-HHHHHHHHHHHHHhhcc----cc---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccHHHHHHhh
Q 011227          195 GNRSRD-QEAFVAVIEETTKVISG----FN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLLKI  266 (490)
Q Consensus       195 G~~~~~-~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ll~~  266 (490)
                      |.+... .+++.+....+......    ..   .....++.+.+.+++.+.++++++..        ....|+++.++..
T Consensus       185 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~--------~~~~d~l~~ll~~  256 (463)
T PLN02196        185 GKDEVLYREDLKRCYYILEKGYNSMPINLPGTLFHKSMKARKELAQILAKILSKRRQNG--------SSHNDLLGSFMGD  256 (463)
T ss_pred             CCCCchHHHHHHHHHHHHhcchhcccccCCCccchHHHHHHHHHHHHHHHHHHHHhhcC--------CCcccHHHHHHhc
Confidence            988543 22333322222111110    11   12234555666667777766654321        1356899988853


Q ss_pred             hcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcC---CCCCCcccccCChhHH
Q 011227          267 QGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHR---TGKVNETSIDEMKFLK  340 (490)
Q Consensus       267 ~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~l~~l~~l~  340 (490)
                      .      ..++++++..   ++++||+|||+++++|++++|++||++|+++++|++++.+.   ++.++++++.+||||+
T Consensus       257 ~------~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~  330 (463)
T PLN02196        257 K------EGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTS  330 (463)
T ss_pred             C------CCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHH
Confidence            1      2367777766   78899999999999999999999999999999999998763   3568899999999999


Q ss_pred             HHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCCCCCcccccc
Q 011227          341 LVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNFEYIPF  420 (490)
Q Consensus       341 a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~~~~~~~~~F  420 (490)
                      |||+||||++|++++.. |.+.+|++++||.||||+.|+++++++||||++|+||++|+||||+.+.     .+..++||
T Consensus       331 avi~EtlRl~p~~~~~~-R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpF  404 (463)
T PLN02196        331 RVIQETLRVASILSFTF-REAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPF  404 (463)
T ss_pred             HHHHHHHhcCCCccccc-eeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCc
Confidence            99999999999999985 9999999999999999999999999999999999999999999999632     34679999


Q ss_pred             CCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeec
Q 011227          421 GAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIP  483 (490)
Q Consensus       421 g~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (490)
                      |+|+|.|+|+++|++|++++++.|+++|+|++.+++.    +..  ...+..|+.++.|++..
T Consensus       405 G~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~----~~~--~~~~~~p~~~~~~~~~~  461 (463)
T PLN02196        405 GNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN----GIQ--YGPFALPQNGLPIALSR  461 (463)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC----ceE--EcccccCCCCceEEEec
Confidence            9999999999999999999999999999999875432    222  23345577787777653


No 23 
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=4.6e-69  Score=522.10  Aligned_cols=429  Identities=17%  Similarity=0.304  Sum_probs=319.1

Q ss_pred             CCCCCCCCCccccccccCCCC--CchhHHHHhhhcCCeEE---EecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcch
Q 011227           39 PPPGPWKLPVIGNLYQLAGSL--PHHGLRDLSKKYGPLML---LQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAA  113 (490)
Q Consensus        39 ~ppgp~~~p~~G~~~~~~~~~--~~~~~~~~~~~yG~v~~---~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~  113 (490)
                      ..|||.++|++||+..+....  .++++.+..++||..++   +++++.++++|+||+.+++|+.++...|.+++.+...
T Consensus        32 ~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~~~~k~~~~~~~  111 (500)
T PLN02169         32 GQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNLTFYFKGPWLSGTDMLFTADPKNIHHILSSNFGNYPKGPEFKKI  111 (500)
T ss_pred             CCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCCcEEEEeeccCCCCeEEEcCHHHHHHHHhhCcccCCCcHHHHHH
Confidence            358899999999997663321  22333444445886665   5788999999999999999998876555554322111


Q ss_pred             hhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhh--hHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHH
Q 011227          114 QILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQS--FQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGIT  189 (490)
Q Consensus       114 ~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~--~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i  189 (490)
                        ... .+++++..+|+.|+++||. +.+.|+...+..  +.+.+.+.++.+++.+++  ..++++|+.+.+..+++|++
T Consensus       112 --~~~-~g~gl~~~~g~~Wr~~Rk~-l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi  187 (500)
T PLN02169        112 --FDV-LGEGILTVDFELWEDLRKS-NHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTS  187 (500)
T ss_pred             --HHh-hcCcccccCcHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHH
Confidence              111 2345777889999999999 579998887654  335666777888887763  34578999999999999999


Q ss_pred             HHHhcCCCCCc------HHHHHHHHHHHHHhhc---ccc--------------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 011227          190 SRAAFGNRSRD------QEAFVAVIEETTKVIS---GFN--------------IADVETLHQEGVRIVENIINEHKKRKA  246 (490)
Q Consensus       190 ~~~~~G~~~~~------~~~~~~~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~i~~~~~~~~  246 (490)
                      +.++||.+.+.      ..++...+........   ..+              .....+..+.+.+++.+.|+++++...
T Consensus       188 ~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~  267 (500)
T PLN02169        188 SILMTGYDPMSLSIEMLEVEFGEAADIGEEAIYYRHFKPVILWRLQNWIGIGLERKMRTALATVNRMFAKIISSRRKEEI  267 (500)
T ss_pred             HhheeCCCccccCCCCCCCHHHHHHHHHHHHHHhHHhccHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999987532      1234443332221110   000              011245566677777777777665321


Q ss_pred             hhccCCCCCCccHHHHHHhhhcCC-CCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Q 011227          247 TLKNCKTGDDEDLVDVLLKIQGHG-DLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVF  322 (490)
Q Consensus       247 ~~~~~~~~~~~~ll~~ll~~~~~~-~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~  322 (490)
                      ... .......|+++.+++..... .....++++++..   ++++||+|||+++++|++|+|++||++|+|+++||++++
T Consensus       268 ~~~-~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~kl~~Ei~~v~  346 (500)
T PLN02169        268 SRA-ETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKF  346 (500)
T ss_pred             ccc-cccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhC
Confidence            110 00112468999998764321 1112356666666   789999999999999999999999999999999999874


Q ss_pred             cCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccce-ecceecCCCCEEEeccccccCCCCCC-CCCCCCCc
Q 011227          323 HRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQ-INGFDIPVKARVIVNAWAIGRDPEYW-TEPESFIP  400 (490)
Q Consensus       323 ~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~-l~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P  400 (490)
                            +++++.+||||+|||+||||+|||+|... |.+.+|.. ++|+.||||+.|++++|++||||++| +||++|+|
T Consensus       347 ------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~P  419 (500)
T PLN02169        347 ------DNEDLEKLVYLHAALSESMRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKP  419 (500)
T ss_pred             ------CHHHHhcCHHHHHHHHHHHhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCc
Confidence                  57899999999999999999999999996 76665555 59999999999999999999999999 89999999


Q ss_pred             ccccCCCCCCC-CCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeE
Q 011227          401 ERFLDHSVDYK-GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCM  479 (490)
Q Consensus       401 ~Rf~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (490)
                      |||++++...+ ..+..|+|||+|+|+|+|++||++|+++++++|+++|+|++.++.+     .....+.+++++.++.+
T Consensus       420 eRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~-----~~~~~~~~l~~~~gl~l  494 (500)
T PLN02169        420 ERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHK-----IEAIPSILLRMKHGLKV  494 (500)
T ss_pred             cccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCC-----cccccceEEecCCCEEE
Confidence            99997543321 2367899999999999999999999999999999999999875432     23345677899999999


Q ss_pred             EeecC
Q 011227          480 TPIPY  484 (490)
Q Consensus       480 ~~~~r  484 (490)
                      ++++|
T Consensus       495 ~l~~~  499 (500)
T PLN02169        495 TVTKK  499 (500)
T ss_pred             EEEeC
Confidence            99887


No 24 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=2.6e-68  Score=521.35  Aligned_cols=430  Identities=21%  Similarity=0.339  Sum_probs=335.6

Q ss_pred             CCCCCCCCCCCCCCccccccccC----CCCCchhHHHHhhhcCC--eEEEecCCccEEEecCHHHHHHHHHhcCcccCCC
Q 011227           34 NRISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGP--LMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASR  107 (490)
Q Consensus        34 ~~~~~~ppgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~--v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~  107 (490)
                      ....+.||||+++|++|++..+.    ..+++.++.+++++||+  +|++++++.++|+++||+.+++++.+++ .|..+
T Consensus        38 ~~~~~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~~-~f~~~  116 (490)
T PLN02302         38 EGQPPLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDDD-AFEPG  116 (490)
T ss_pred             cCCCCCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCCC-ccccC
Confidence            34456789999999999987653    34688899999999997  7999999999999999999999998763 34433


Q ss_pred             CCCcchhhhccCCceEEEccCChhHHHHHhhhHHhhc-cHHHHhhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHH
Q 011227          108 PHFPAAQILSYNYRDIIFSSYGDSWKQLRKICVSELL-SAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMY  186 (490)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~  186 (490)
                      ........   .+...+...+|+.|+++|+.+ .+.| +++.++.+.+.+.+.++++++.+..  ++.+|+.+.++.+++
T Consensus       117 ~~~~~~~~---~g~~~~~~~~g~~w~~~R~~~-~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~--~~~v~~~~~~~~~~~  190 (490)
T PLN02302        117 WPESTVEL---IGRKSFVGITGEEHKRLRRLT-AAPVNGPEALSTYIPYIEENVKSCLEKWSK--MGEIEFLTELRKLTF  190 (490)
T ss_pred             CchhHHHH---hccccccccCcHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHHHHhcC--CCCEehHHHHHHHHH
Confidence            22111121   133445667899999999995 5666 5788999999999999999998863  346999999999999


Q ss_pred             HHHHHHhcCCCCCcH-HHHHHHHHHHHHhhcc----cc---hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcc
Q 011227          187 GITSRAAFGNRSRDQ-EAFVAVIEETTKVISG----FN---IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDED  258 (490)
Q Consensus       187 ~~i~~~~~G~~~~~~-~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  258 (490)
                      ++++.++||.+.+.. +.+......+...+..    .+   .....++.+.+.+++.+.++++++......   .....|
T Consensus       191 ~vi~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~---~~~~~d  267 (490)
T PLN02302        191 KIIMYIFLSSESELVMEALEREYTTLNYGVRAMAINLPGFAYHRALKARKKLVALFQSIVDERRNSRKQNI---SPRKKD  267 (490)
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHHhhhCCcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCCcCC
Confidence            999999999876542 2222222222111111    11   112244556677778888877765432111   113579


Q ss_pred             HHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCC----CCCCcc
Q 011227          259 LVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT----GKVNET  331 (490)
Q Consensus       259 ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~----~~~~~~  331 (490)
                      +++.+++..++++  ..+++++++.   ++++||+|||+++++|++++|++||++|+|+++|++++.++.    ..++++
T Consensus       268 ~l~~ll~~~~~~~--~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~  345 (490)
T PLN02302        268 MLDLLLDAEDENG--RKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLK  345 (490)
T ss_pred             HHHHHHhhhccCC--CCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Confidence            9999998754322  2467788777   678999999999999999999999999999999999998642    137889


Q ss_pred             cccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 011227          332 SIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYK  411 (490)
Q Consensus       332 ~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~  411 (490)
                      ++++||||+|||+|+||++|+++.. +|.+.+|++++||.||||+.|.++.+++||||++|+||++|+||||++..    
T Consensus       346 ~l~~lpyl~a~i~E~lRl~p~~~~~-~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----  420 (490)
T PLN02302        346 DVRKMEYLSQVIDETLRLINISLTV-FREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----  420 (490)
T ss_pred             HHhcChHHHHHHHHHHHhCCCcccc-hhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----
Confidence            9999999999999999999999987 59999999999999999999999999999999999999999999999653    


Q ss_pred             CCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCCC
Q 011227          412 GTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  486 (490)
Q Consensus       412 ~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  486 (490)
                      ..+..++|||+|+|.|+|++||.+|+++++++|+++|||++.++..    +....  ..+.|+.++.++.++|..
T Consensus       421 ~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~----~~~~~--~~~~p~~~~~~~~~~~~~  489 (490)
T PLN02302        421 PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGC----KVMYL--PHPRPKDNCLARITKVAS  489 (490)
T ss_pred             CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCC----cceeC--CCCCCCCCceEEEEeccC
Confidence            2456799999999999999999999999999999999999875421    22221  126677888888887753


No 25 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=2.3e-68  Score=524.09  Aligned_cols=422  Identities=22%  Similarity=0.374  Sum_probs=324.1

Q ss_pred             cccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhhhccCCceEEEccC
Q 011227           49 IGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILSYNYRDIIFSSY  128 (490)
Q Consensus        49 ~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (490)
                      +||+..+..+.++..+.++|++|||||++++++.++++|+||+.+++|+.++...+.+++........   ...+++..+
T Consensus       142 ~G~l~~i~~g~~~~~l~~lh~kYGpI~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~~~~~~~---~g~~l~~~d  218 (633)
T PLN02738        142 KGSISAVRGEAFFIPLYELFLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILEFV---MGKGLIPAD  218 (633)
T ss_pred             cCcHHHhcCchHHHHHHHHHHHhCCEEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchHHHHhhc---cCCceecCC
Confidence            34444454456778899999999999999999999999999999999999766556554322111111   223466788


Q ss_pred             ChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCCCceehhHHHHHHHHHHHHHHhcCCCCCc---HHH
Q 011227          129 GDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAGSVINLTQNVHSLMYGITSRAAFGNRSRD---QEA  203 (490)
Q Consensus       129 g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~~~vdl~~~~~~~~~~~i~~~~~G~~~~~---~~~  203 (490)
                      |+.|+.+|+. +.++|+...+..+.+.+.+.++.+++.|..  ..++++|+.+.+..+++|+|+.++||.+++.   .++
T Consensus       219 ge~wr~rRr~-l~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~~~  297 (633)
T PLN02738        219 GEIWRVRRRA-IVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSNDTG  297 (633)
T ss_pred             cHHHHHHHHh-ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCccccccchH
Confidence            9999999999 689999999999999999999999999974  3567899999999999999999999998753   223


Q ss_pred             HHHHHHHHHHhh-----cccc-h--h----------hHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCccHH
Q 011227          204 FVAVIEETTKVI-----SGFN-I--A----------DVETLHQEGVRIVENIINEHKKRKATLKN-----CKTGDDEDLV  260 (490)
Q Consensus       204 ~~~~~~~~~~~~-----~~~~-~--~----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~ll  260 (490)
                      +...+.......     .... +  .          ...+..+.+.+.+..+++..++..+....     .....+.+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil  377 (633)
T PLN02738        298 IVEAVYTVLREAEDRSVSPIPVWEIPIWKDISPRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSIL  377 (633)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhhhhhHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchHH
Confidence            333322222111     0000 0  0          01122333344444555443332111100     0011346899


Q ss_pred             HHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCCCCcccccCCh
Q 011227          261 DVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKVNETSIDEMK  337 (490)
Q Consensus       261 ~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~~l~  337 (490)
                      +.|++..      ..++++++..   ++++||+|||+.+++|++|+|++||++|+|||+|+++++++ +.++++++++||
T Consensus       378 ~~Ll~~~------~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~-~~~t~edL~kLP  450 (633)
T PLN02738        378 HFLLASG------DDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGD-RFPTIEDMKKLK  450 (633)
T ss_pred             HHHHHcC------CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC-CCCCHHHHccCH
Confidence            9998753      1367777766   78899999999999999999999999999999999999874 568999999999


Q ss_pred             hHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCC--CCCCCCc
Q 011227          338 FLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSV--DYKGTNF  415 (490)
Q Consensus       338 ~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~--~~~~~~~  415 (490)
                      ||+|||+|+|||+|+++.. +|++.+|.+++||.||+||.|+++.+.+||||++|+||++|+||||+.+..  .....+.
T Consensus       451 YL~AVIkEtLRL~p~~p~~-~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~  529 (633)
T PLN02738        451 YTTRVINESLRLYPQPPVL-IRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNF  529 (633)
T ss_pred             HHHHHHHHHHhcCCCcccc-ceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCC
Confidence            9999999999999999997 599999999999999999999999999999999999999999999985321  1123456


Q ss_pred             cccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCCC
Q 011227          416 EYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  486 (490)
Q Consensus       416 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  486 (490)
                      .|+|||.|+|.|+|++||++|++++|+.|+++|+|++.++.+  +  .....+.++.++.++.|++++|..
T Consensus       530 ~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~--~--~~~~~~~~~~p~~~l~v~l~~R~~  596 (633)
T PLN02738        530 SYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAP--P--VKMTTGATIHTTEGLKMTVTRRTK  596 (633)
T ss_pred             ceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCC--C--cccccceEEeeCCCcEEEEEECCC
Confidence            899999999999999999999999999999999999876542  1  222345677788899999999854


No 26 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=5.2e-70  Score=533.27  Aligned_cols=411  Identities=32%  Similarity=0.592  Sum_probs=330.9

Q ss_pred             CCCCCCCCccccccccC-CCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhh-hc
Q 011227           40 PPGPWKLPVIGNLYQLA-GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQI-LS  117 (490)
Q Consensus        40 ppgp~~~p~~G~~~~~~-~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~-~~  117 (490)
                      ||||.++|++||+..+. .++++.++.+++++||++|++++++.++++|+||+.+++|+.++...++.++....... ..
T Consensus         1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~~   80 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGPIFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFRG   80 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTSEEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCCEEEEeEecccccccccchhhccccccccccccccccccccccccc
Confidence            79999999999999985 26788889999999999999999999999999999999999988765654432222221 11


Q ss_pred             cCCceEEEccCChhHHHHHhhhHHhhccHH-HHhhhHHHHHHHHHHHHHHHHhcCCC--ceehhHHHHHHHHHHHHHHhc
Q 011227          118 YNYRDIIFSSYGDSWKQLRKICVSELLSAK-RVQSFQSIREAEVSDLINWISSKAGS--VINLTQNVHSLMYGITSRAAF  194 (490)
Q Consensus       118 ~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~-~l~~~~~~~~~~~~~l~~~l~~~~~~--~vdl~~~~~~~~~~~i~~~~~  194 (490)
                      ......++..+|+.|+.+|+.+ .+.|+.. .+ .+.+.+.+.++.+++.|....+.  .+|+.++++.+++++++.++|
T Consensus        81 ~~~~~~l~~~~~~~~~~~R~~~-~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~f  158 (463)
T PF00067_consen   81 PFGGKGLFFSDGERWRRQRRLL-APAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLF  158 (463)
T ss_dssp             HHTTTSSTTSSHHHHHHHHHHH-HHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccc-cccccccccc-ccccccccccccccccccccccccceeeeecccccccccccccccc
Confidence            1234456677789999999994 6666666 66 89999999999999999865443  599999999999999999999


Q ss_pred             CCCCC---cH--HHHHHHHHHHHHhhcc--------cc-----h----hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 011227          195 GNRSR---DQ--EAFVAVIEETTKVISG--------FN-----I----ADVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (490)
Q Consensus       195 G~~~~---~~--~~~~~~~~~~~~~~~~--------~~-----~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (490)
                      |.+++   ..  .++.+.+..+...+..        .+     .    ....++.+.+.+++...++++++.....    
T Consensus       159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----  234 (463)
T PF00067_consen  159 GKDFGSLDDEDFEEFLEAFDELFELLSNFFWNLPFFFPWLKYLPTPLFRRFKRARDRLRKYIKEIIEERREELDDG----  234 (463)
T ss_dssp             SSHHHGTTHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHSS----
T ss_pred             cceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            99854   22  2345555444332211        00     0    1113344556666677777766655432    


Q ss_pred             CCCCccHHHHHHhhh-cCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCCC
Q 011227          253 TGDDEDLVDVLLKIQ-GHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKV  328 (490)
Q Consensus       253 ~~~~~~ll~~ll~~~-~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~  328 (490)
                      .....|+++.++... +..+. ..++.+++..   .+++||+|||+.+++|++++|++||++|+++++||+++.++++.+
T Consensus       235 ~~~~~d~l~~ll~~~~~~~~~-~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~  313 (463)
T PF00067_consen  235 DESRRDLLDSLLQASSDSDGP-SGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREI  313 (463)
T ss_dssp             SSSCSSHHHHHHHHHHTTTTT-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSH
T ss_pred             ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            125789999999986 22221 3588888877   788999999999999999999999999999999999999766788


Q ss_pred             CcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCC
Q 011227          329 NETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSV  408 (490)
Q Consensus       329 ~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~  408 (490)
                      +.+++.+||||+|||+||||++|+++...+|.+.+|++++||.|||||.|+++++++|+||++|+||++|+||||++...
T Consensus       314 ~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~  393 (463)
T PF00067_consen  314 TFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERG  393 (463)
T ss_dssp             HHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999655799999999999999999999999999999999999999999999998865


Q ss_pred             CCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCC
Q 011227          409 DYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIK  457 (490)
Q Consensus       409 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~  457 (490)
                      .....+..|+|||+|+|.|+|++||++|+++++++|+++|||++.++..
T Consensus       394 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~  442 (463)
T PF00067_consen  394 ISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSE  442 (463)
T ss_dssp             TBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSS
T ss_pred             ccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCC
Confidence            3234677899999999999999999999999999999999999976654


No 27 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=1.4e-67  Score=506.85  Aligned_cols=424  Identities=18%  Similarity=0.276  Sum_probs=326.6

Q ss_pred             CCCCCCCCCCCCCccccccccC----CCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCC
Q 011227           35 RISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHF  110 (490)
Q Consensus        35 ~~~~~ppgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~  110 (490)
                      .+...||||.++|++||+..+.    ..+++.++.+++++||++|++++++.++++|+||+.+++++.++...|..+...
T Consensus        27 ~~~~lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~~  106 (472)
T PLN02987         27 RRMRLPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGSLFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYPG  106 (472)
T ss_pred             CCCCCcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhchhhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCcH
Confidence            3445789999999999998763    246788899999999999999999999999999999999999877666543221


Q ss_pred             cchhhhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHH-HHHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHH
Q 011227          111 PAAQILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQS-IREAEVSDLINWISSKAGSVINLTQNVHSLMYGIT  189 (490)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~i  189 (490)
                      ......   +..+++..+|+.|+++|+. +.++++.+.++.+.. .+.+.++..++.|.    +++++.+.++.++++++
T Consensus       107 ~~~~~l---g~~~l~~~~g~~wr~~R~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~t~~vi  178 (472)
T PLN02987        107 SISNLL---GKHSLLLMKGNLHKKMHSL-TMSFANSSIIKDHLLLDIDRLIRFNLDSWS----SRVLLMEEAKKITFELT  178 (472)
T ss_pred             HHHHHh---CcccccccCcHHHHHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHhhc----cceehHHHHHHHHHHHH
Confidence            122222   3345666789999999999 456655555544331 23333344444442    46999999999999999


Q ss_pred             HHHhcCCCCCcH-HHHHHHHHHHHHhhcc--cc-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccHHH
Q 011227          190 SRAAFGNRSRDQ-EAFVAVIEETTKVISG--FN-----IADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVD  261 (490)
Q Consensus       190 ~~~~~G~~~~~~-~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~  261 (490)
                      ++++||.+.+.. +.+...+.........  .+     .....+.++++.+++.+.++++++.....    .....|+++
T Consensus       179 ~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~----~~~~~d~l~  254 (472)
T PLN02987        179 VKQLMSFDPGEWTESLRKEYVLVIEGFFSVPLPLFSTTYRRAIQARTKVAEALTLVVMKRRKEEEEG----AEKKKDMLA  254 (472)
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHhhhhcCCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----CcccccHHH
Confidence            999999876432 2232322222211111  11     12335566777777888887776543211    113578999


Q ss_pred             HHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhc---CCCCCCcccccC
Q 011227          262 VLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFH---RTGKVNETSIDE  335 (490)
Q Consensus       262 ~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~---~~~~~~~~~l~~  335 (490)
                      .+++...      .+++++++.   ++++||+|||+.+++|++++|++||++|+++++|++++.+   +++.++++++.+
T Consensus       255 ~ll~~~~------~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~  328 (472)
T PLN02987        255 ALLASDD------GFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKS  328 (472)
T ss_pred             HHHhcCC------CCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhc
Confidence            9997532      377888877   6789999999999999999999999999999999999875   235678899999


Q ss_pred             ChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCCCCCc
Q 011227          336 MKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNF  415 (490)
Q Consensus       336 l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~~~~~  415 (490)
                      |||++||++|+||++|+++.. +|.+.+|++++||.||||+.|+++.+.+||||++|+||++|+||||++++.. ...+.
T Consensus       329 lpyl~a~i~EtLRl~p~~~~~-~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~  406 (472)
T PLN02987        329 MPFTQCVVNETLRVANIIGGI-FRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSN  406 (472)
T ss_pred             ChHHHHHHHHHHHccCCcCCc-cccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCc
Confidence            999999999999999999866 6999999999999999999999999999999999999999999999975432 12346


Q ss_pred             cccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCC
Q 011227          416 EYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       416 ~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  485 (490)
                      .++|||+|+|.|+|++||++|++++++.|+++|+|++.++.+     ...  ..++.|+.++.+++++|.
T Consensus       407 ~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~-----~~~--~~~~~p~~~~~~~~~~r~  469 (472)
T PLN02987        407 VFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK-----LVF--FPTTRTQKRYPINVKRRD  469 (472)
T ss_pred             ceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCc-----eee--cccccCCCCceEEEEecc
Confidence            799999999999999999999999999999999999875532     211  337788889999999884


No 28 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=2.4e-66  Score=503.40  Aligned_cols=432  Identities=22%  Similarity=0.362  Sum_probs=334.5

Q ss_pred             CCCCCCCCCccccccccC----CCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchh
Q 011227           39 PPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQ  114 (490)
Q Consensus        39 ~ppgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~  114 (490)
                      .=.|-.|||++|..+.+.    .+.++..+.+|+++||++|++++++.++++++||+++++|+.+....|.+++.+....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~~~~~   92 (489)
T PLN02936         13 LWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGPVYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVAEVSE   92 (489)
T ss_pred             cCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCCEEEEccCCccEEEEcCHHHHHHHHHhccccccCcchhhhhH
Confidence            346778999999877653    4567889999999999999999999999999999999999987666666543322211


Q ss_pred             hhccCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHH-HHHHHHHHHHHHHHhc--CCCceehhHHHHHHHHHHHHH
Q 011227          115 ILSYNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQS-IREAEVSDLINWISSK--AGSVINLTQNVHSLMYGITSR  191 (490)
Q Consensus       115 ~~~~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~-~~~~~~~~l~~~l~~~--~~~~vdl~~~~~~~~~~~i~~  191 (490)
                      ..   ..++++..+|+.|+++|+. +.+.|+...+..+.+ .+.+.++.+++.+.+.  .++++|+.++++.+++++++.
T Consensus        93 ~~---~~~~i~~~~g~~wk~~Rk~-l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~  168 (489)
T PLN02936         93 FL---FGSGFAIAEGELWTARRRA-VVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGL  168 (489)
T ss_pred             HH---hcCccccCCchHHHHHHHh-hcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHH
Confidence            11   1245667889999999999 678888888887654 7788899999998742  467899999999999999999


Q ss_pred             HhcCCCCCcH---HHHHHHHHHHHHhh-----cccc-------------hhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011227          192 AAFGNRSRDQ---EAFVAVIEETTKVI-----SGFN-------------IADVETLHQEGVRIVENIINEHKKRKATLKN  250 (490)
Q Consensus       192 ~~~G~~~~~~---~~~~~~~~~~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  250 (490)
                      ++||.+++..   +++.+.+.......     ...+             .....++.+.+.+.+.+.++++++..+....
T Consensus       169 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~p~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~  248 (489)
T PLN02936        169 SVFNYNFDSLTTDSPVIQAVYTALKEAETRSTDLLPYWKVDFLCKISPRQIKAEKAVTVIRETVEDLVDKCKEIVEAEGE  248 (489)
T ss_pred             HHcCCCccccccCcHHHHHHHHHHHHHHHhhhccchHHhhHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999987631   23333332221111     0000             0012334455567777777766654321111


Q ss_pred             C---C---CCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Q 011227          251 C---K---TGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREV  321 (490)
Q Consensus       251 ~---~---~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~  321 (490)
                      .   .   .....++++.|+...+      .++.+++..   ++++||+|||+++++|++|+|++||++|+++++|++++
T Consensus       249 ~~~~~~~~~~~~~d~l~~ll~~~~------~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~  322 (489)
T PLN02936        249 VIEGEEYVNDSDPSVLRFLLASRE------EVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRV  322 (489)
T ss_pred             ccccccccccCchHHHHHHHhccc------cCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            0   0   0134678998886532      266777766   78899999999999999999999999999999999999


Q ss_pred             hcCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEeccccccCCCCCCCCCCCCCcc
Q 011227          322 FHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPE  401 (490)
Q Consensus       322 ~~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~  401 (490)
                      +++ +.++++++.+||||+|||+||||++||++...+|.+.+|+.++|+.||+|+.|+++.+++||||++|+||++|+||
T Consensus       323 ~~~-~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~Pe  401 (489)
T PLN02936        323 LQG-RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPE  401 (489)
T ss_pred             hcC-CCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCcc
Confidence            875 4578899999999999999999999999998766667788889999999999999999999999999999999999


Q ss_pred             cccCCCCC--CCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeE
Q 011227          402 RFLDHSVD--YKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCM  479 (490)
Q Consensus       402 Rf~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (490)
                      ||+.++..  ....+..++|||+|+|.|+|++||++|+++++++|+++|++++.++.+   +  ....+.++.++.++.|
T Consensus       402 Rwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~---~--~~~~~~~~~~~~~~~v  476 (489)
T PLN02936        402 RFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQD---I--VMTTGATIHTTNGLYM  476 (489)
T ss_pred             ccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCc---c--ceecceEEeeCCCeEE
Confidence            99964321  122345899999999999999999999999999999999999876543   1  2223556678889999


Q ss_pred             EeecCCC
Q 011227          480 TPIPYHP  486 (490)
Q Consensus       480 ~~~~r~~  486 (490)
                      ++++|..
T Consensus       477 ~~~~R~~  483 (489)
T PLN02936        477 TVSRRRV  483 (489)
T ss_pred             EEEeeeC
Confidence            9998864


No 29 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=5e-66  Score=454.84  Aligned_cols=429  Identities=21%  Similarity=0.371  Sum_probs=335.9

Q ss_pred             CCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhhhc
Q 011227           38 NPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILS  117 (490)
Q Consensus        38 ~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~~~  117 (490)
                      +||-.-.++|++|++..+ ++++..+++++++|||+||++.++|+.+.++.||+....++++.....+....+..... .
T Consensus        32 ~PPli~gwiP~lG~a~~f-gk~P~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~-~  109 (486)
T KOG0684|consen   32 EPPLIKGWIPWLGSALAF-GKDPLEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTT-P  109 (486)
T ss_pred             CCcccccCcchhhHHHHh-ccCHHHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhh-h
Confidence            455555689999999999 89999999999999999999999999999999999999999987444432222211111 1


Q ss_pred             cCCceEEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHH-HHhcCCCceehhHHHHHHHHHHHHHHhcCC
Q 011227          118 YNYRDIIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINW-ISSKAGSVINLTQNVHSLMYGITSRAAFGN  196 (490)
Q Consensus       118 ~~~~~~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-l~~~~~~~vdl~~~~~~~~~~~i~~~~~G~  196 (490)
                      ..+.+.+...++....++.+. ....+....++.+.+.+.+++.+.+.. |.+ ++.+-.+......+++.+.-..++|+
T Consensus       110 vFg~~v~~d~~~~~~~e~~~~-~k~~L~~~~lk~~~e~m~~el~~~f~~~~~~-s~~~d~l~~~~~~ii~tAs~~ll~~e  187 (486)
T KOG0684|consen  110 VFGKGVVYDVPNHVMMEQKKF-FKSALGGVALKSLVELMLEELHAYFETSLGE-SGETDGLYTFCRLIIFTASRLLLGGE  187 (486)
T ss_pred             hcCCCccccCCCchHHHHHHH-HHHHhchhhHHHHHHHHHHHHHHHHhccccc-ccchhHhhhhhHHHhhhhHHHhhhhh
Confidence            124556666677777777777 578889999999999999999888777 543 55666677777788887777777776


Q ss_pred             CCCc-HHHHHHHHHHHHHhh-------c-ccch---hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccHHHHHH
Q 011227          197 RSRD-QEAFVAVIEETTKVI-------S-GFNI---ADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLL  264 (490)
Q Consensus       197 ~~~~-~~~~~~~~~~~~~~~-------~-~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ll  264 (490)
                      .... +++....+.++.+.+       . .+++   .+..++++.+.+.+...+.++++..+.       .+.|.++.++
T Consensus       188 ~r~~~d~~~a~l~~dLd~~F~~~d~~FP~~LP~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~-------~~~dmlq~l~  260 (486)
T KOG0684|consen  188 VRDQLDADVAKLYHDLDQGFQPFDFLFPYNLPIPLLRRRDRARKKISKIFSKIILDRRASISK-------WDNDMLQSLM  260 (486)
T ss_pred             hhhhhcchHHHHHHHHhccccchHhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHH
Confidence            5443 334444444444322       2 2222   222566677777777777777665432       4678899998


Q ss_pred             hhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCC-CCcccccCChhHH
Q 011227          265 KIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGK-VNETSIDEMKFLK  340 (490)
Q Consensus       265 ~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~-~~~~~l~~l~~l~  340 (490)
                      +..+++   ...+++++..   .+++||+.|++.+.+|++++|++||++++.+++|+.++++++.. ++++++++||.|+
T Consensus       261 ~~y~dg---~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~  337 (486)
T KOG0684|consen  261 EKYKDG---RPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLD  337 (486)
T ss_pred             HHhhcC---CcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHH
Confidence            833323   2466677666   56899999999999999999999999999999999999987754 9999999999999


Q ss_pred             HHHHhhcCCCCCCCCCCcccccccceecc----eecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCC----CC
Q 011227          341 LVVKETLRLHPAAPLLIPRECGQRCQING----FDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDY----KG  412 (490)
Q Consensus       341 a~i~EtlRl~p~~~~~~~R~~~~~~~l~g----~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~----~~  412 (490)
                      +||+|||||+||.+..+ |.+.+|.++.+    |.||+|..|.++.+.+|+||++|++|++|+|+||+.+.+..    +.
T Consensus       338 ~~IkEtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~k  416 (486)
T KOG0684|consen  338 SCIKETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEK  416 (486)
T ss_pred             HHHHHHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCccccccccc
Confidence            99999999999999986 99999999965    99999999999999999999999999999999999654332    22


Q ss_pred             CCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCC
Q 011227          413 TNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYH  485 (490)
Q Consensus       413 ~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  485 (490)
                      -.+.++|||+|.|.|||++||.+|+++++..+|+.||+|+.++ +...++...   .+..|..++.++.+.|.
T Consensus       417 l~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~-~~P~~d~s~---~v~~P~g~v~irYK~R~  485 (486)
T KOG0684|consen  417 LDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG-PFPEVDYSR---MVMQPEGDVRIRYKRRP  485 (486)
T ss_pred             ccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC-CCCCCCHHH---hhcCCCCCceEEEeecC
Confidence            2445699999999999999999999999999999999999986 322333322   26789999999998885


No 30 
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=2e-64  Score=488.84  Aligned_cols=416  Identities=19%  Similarity=0.257  Sum_probs=315.6

Q ss_pred             CCccccccccCCCCCchhHHHHhhhcC-CeEEEecCCccEEEecCHHHHHHHHHhcCcccCCCCCCcchhhhccCCceEE
Q 011227           46 LPVIGNLYQLAGSLPHHGLRDLSKKYG-PLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFASRPHFPAAQILSYNYRDII  124 (490)
Q Consensus        46 ~p~~G~~~~~~~~~~~~~~~~~~~~yG-~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (490)
                      .++.|++... ..+...++..+.++++ .+++++.++.  ++++||+.+++++.++...|.+...+... .....+ +++
T Consensus        49 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--iv~~dpe~i~~vl~~~~~~~~k~~~~~~~-~~~~~g-~gi  123 (502)
T PLN02426         49 AYLTASWAKD-FDNLCDWYAHLLRRSPTGTIHVHVLGN--TITANPENVEYMLKTRFDNYPKGKPFSAI-LGDLLG-RGI  123 (502)
T ss_pred             CCccHHHHHh-cccHHHHHHHHHHhCCCcEEEEecCCc--EEecCHHHHHHHHhhChhcCCCcHhHHHH-HHHhcC-Cce
Confidence            4578887654 2345777777888887 6788876554  89999999999998765556544322111 001113 357


Q ss_pred             EccCChhHHHHHhhhHHhhccHHHHhhhH--HHHHHHHHHHHHHHHhc----CCCceehhHHHHHHHHHHHHHHhcCCCC
Q 011227          125 FSSYGDSWKQLRKICVSELLSAKRVQSFQ--SIREAEVSDLINWISSK----AGSVINLTQNVHSLMYGITSRAAFGNRS  198 (490)
Q Consensus       125 ~~~~g~~w~~~R~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~----~~~~vdl~~~~~~~~~~~i~~~~~G~~~  198 (490)
                      ++.+|+.|+++||. ..+.|+.+.++.+.  +.+.+..+.+++.+.+.    .+.++|+.++++.+++|+++.++||.++
T Consensus       124 ~~~~g~~wk~~Rk~-l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~  202 (502)
T PLN02426        124 FNVDGDSWRFQRKM-ASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDP  202 (502)
T ss_pred             eecCcHHHHHHHHH-hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCC
Confidence            88899999999999 68999998888764  56777777788777631    2467999999999999999999999986


Q ss_pred             Cc------HHHHHHHHHHHHHhh-----cccch-------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 011227          199 RD------QEAFVAVIEETTKVI-----SGFNI-------------ADVETLHQEGVRIVENIINEHKKRKATLKNCKTG  254 (490)
Q Consensus       199 ~~------~~~~~~~~~~~~~~~-----~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  254 (490)
                      +.      ..++.+.++.+....     ....+             ....+..+.+.+++.+.++++++...       .
T Consensus       203 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~I~~r~~~~~-------~  275 (502)
T PLN02426        203 GCLELSLPISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKEAIKLVDELAAEVIRQRRKLGF-------S  275 (502)
T ss_pred             cccCCCCCccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhccc-------C
Confidence            53      134555444332211     00010             11233445556666666666544211       1


Q ss_pred             CCccHHHHHHhhhcCCCCCcccchhHHHH---HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCC-CCCCc
Q 011227          255 DDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRT-GKVNE  330 (490)
Q Consensus       255 ~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~-~~~~~  330 (490)
                      ...|+++.+++...        +++++..   ++++||+|||+++++|++|+|++||++|+|+++|++++.+.+ ..+++
T Consensus       276 ~~~dll~~ll~~~~--------~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~~~~t~  347 (502)
T PLN02426        276 ASKDLLSRFMASIN--------DDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPNQEAASF  347 (502)
T ss_pred             CcchHHHHHHhcCC--------CHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCCCCH
Confidence            35799999997532        2334443   789999999999999999999999999999999999998754 46899


Q ss_pred             ccccCChhHHHHHHhhcCCCCCCCCCCccccccccee-cceecCCCCEEEeccccccCCCCCC-CCCCCCCcccccCCCC
Q 011227          331 TSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI-NGFDIPVKARVIVNAWAIGRDPEYW-TEPESFIPERFLDHSV  408 (490)
Q Consensus       331 ~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l-~g~~Ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~Rf~~~~~  408 (490)
                      +++.+||||+|||+||||++||++... |.+.+|..+ +|+.||+||.|.++.+++||||++| +||++|+||||+++..
T Consensus       348 ~~l~~LpYl~avi~EtLRl~p~v~~~~-r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~  426 (502)
T PLN02426        348 EEMKEMHYLHAALYESMRLFPPVQFDS-KFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGV  426 (502)
T ss_pred             HHHhcChHHHHHHHHHHhCCCCCCCcc-eeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCC
Confidence            999999999999999999999999985 999888877 9999999999999999999999999 9999999999997432


Q ss_pred             CCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhccceecCCCCCCCCCCcccccCeeeeccCceeEEeecCCC
Q 011227          409 DYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYHFDWKLPNGIKHEDLDMTEAFGVTVRRKQDLCMTPIPYHP  486 (490)
Q Consensus       409 ~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  486 (490)
                      .....+..++|||+|+|.|+|++||++|++++++.|+++|++++.++.. .  ......+.+++++.++.|++++|+.
T Consensus       427 ~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~-~--~~~~~~~~~~~~~~gl~v~~~~r~~  501 (502)
T PLN02426        427 FVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSN-R--APRFAPGLTATVRGGLPVRVRERVR  501 (502)
T ss_pred             cCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCC-C--CCcccceeEEecCCCEEEEEEEccC
Confidence            1122456799999999999999999999999999999999999864322 1  1223346778899999999999853


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=2.8e-60  Score=452.34  Aligned_cols=403  Identities=16%  Similarity=0.227  Sum_probs=291.3

Q ss_pred             CCCCCCCCCCCCCCccccccccC----CCCCchhHHHHhhhcCC-eEEEecCCccE-------EEecCHHHHHHHHHh--
Q 011227           34 NRISNPPPGPWKLPVIGNLYQLA----GSLPHHGLRDLSKKYGP-LMLLQLGEVPT-------IIVSSPEVAKEVMKT--   99 (490)
Q Consensus        34 ~~~~~~ppgp~~~p~~G~~~~~~----~~~~~~~~~~~~~~yG~-v~~~~~~~~~~-------vvv~~p~~v~~il~~--   99 (490)
                      ..+.+.|||+.++|++|+..++.    ..++..++.+.++|||+ ||+++++|.|+       |+++||++++.+|.+  
T Consensus        13 ~~~~~~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~   92 (480)
T PLN02648         13 SLPLREIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSK   92 (480)
T ss_pred             CCCCCCCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchh
Confidence            34567789999999999997542    44667999999999998 99999998666       999999999999985  


Q ss_pred             --cCcccCCCCCCcchhhhccCCce---EEEccCChhHHHHHhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHh--cCC
Q 011227          100 --HDVVFASRPHFPAAQILSYNYRD---IIFSSYGDSWKQLRKICVSELLSAKRVQSFQSIREAEVSDLINWISS--KAG  172 (490)
Q Consensus       100 --~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~w~~~R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~--~~~  172 (490)
                        +...+........ .++   |.+   +++..+|+.|+++|++ +.+.|+ ..++.+.+.+.+.++++++.|..  ..+
T Consensus        93 ~~~~~~~~~~~~~~~-~l~---G~~~~~s~~~~~g~~H~r~Rrl-l~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~  166 (480)
T PLN02648         93 VDKRDVFTGTYMPST-AFT---GGYRVLSYLDPSEPKHAKLKSF-LFELLK-SRHRRFIPEFRAAFAELFDTWEAELAKK  166 (480)
T ss_pred             ccccccceeeeccCc-ccc---CCceeeeecCCCCchHHHHHHH-HHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhC
Confidence              3333332222111 222   333   6778899999999999 578888 46788999999999999999964  344


Q ss_pred             CceehhHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 011227          173 SVINLTQNVHSLMYGITSRAAFGNRSRDQEAFVAVIEETTKVISGFNIADVETLHQEGVRIVENIINEHKKRKATLKNCK  252 (490)
Q Consensus       173 ~~vdl~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  252 (490)
                      +.+|+.+.++.++++++++++||.+.+. +.+.+.+..+.............  ...+...+++.+.++........   
T Consensus       167 ~~vdv~~~~~~lt~~vi~~~lfG~~~~~-~~l~~~~~~~~~~~~~~~~~p~~--~~~l~~~~~~~i~~~~~~~~~~~---  240 (480)
T PLN02648        167 GKAEFNDPLDQMAFNFLCKALTGKDPSE-TALGSDGPALIQKWLALQLAPLA--STGLPHVLEELLLHTFPLPFFLV---  240 (480)
T ss_pred             CCccccchHHHHHHHHHHHHHcCCCcch-hhhccchhHHHHHHHHHHhhHHH--HcCchHHHHHHhhcccCCchhhh---
Confidence            5799999999999999999999987655 21222111111111000000000  00111112221111100000000   


Q ss_pred             CCCCccH-------HHHHHhhhcCCCCCcccchhHHHHHHHh-c---ccccHHHHHHHHHHHHHhCcH-HHHHHHHHHHH
Q 011227          253 TGDDEDL-------VDVLLKIQGHGDLDSFLTTDHIKADIFA-A---GSETSATTVDWAMCEMMKNPR-VMKKAQAEVRE  320 (490)
Q Consensus       253 ~~~~~~l-------l~~ll~~~~~~~~~~~~~~~~i~~~~l~-a---g~~tt~~~l~~~l~~L~~~p~-~~~~l~~Ei~~  320 (490)
                      .....++       .+.++....+.    .++++++...+++ +   +++|++++++|++|+|++||+ +|++|++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~ll~~~~~~----~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr~Ei~~  316 (480)
T PLN02648        241 KSDYDKLYDFFRASATEALDLAEKF----GISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLAEEVRS  316 (480)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            0011122       22444433222    3788888773332 4   455566789999999999995 99999999999


Q ss_pred             hhcC-CCCCCcccccCChhHHHHHHhhcCCCCCCCCCCcccccccceec----ceecCCCCEEEeccccccCCCCCCCCC
Q 011227          321 VFHR-TGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQIN----GFDIPVKARVIVNAWAIGRDPEYWTEP  395 (490)
Q Consensus       321 ~~~~-~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~----g~~Ip~g~~v~~~~~~~~~d~~~~~~p  395 (490)
                      +.+. ++.++++++.+||||++||+|+||++|+++... |.+.+|++++    ||.||||+.|+++.+.+||||++|+||
T Consensus       317 ~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~-r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP  395 (480)
T PLN02648        317 AVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQY-GRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRP  395 (480)
T ss_pred             HhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCccccc-ceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCc
Confidence            9863 456899999999999999999999999999986 8899999996    799999999999999999999999999


Q ss_pred             CCCCcccccCCCCCCCCCCcccccc---------CCCCCCCCChhhHHHHhHHHHHHhHhccc-eecCCCC
Q 011227          396 ESFIPERFLDHSVDYKGTNFEYIPF---------GAGRRICPGMSFGLASVELPLAMLLYHFD-WKLPNGI  456 (490)
Q Consensus       396 ~~F~P~Rf~~~~~~~~~~~~~~~~F---------g~G~r~C~G~~~A~~~~~~~l~~ll~~f~-~~~~~~~  456 (490)
                      ++|||+||++++..   ....+++|         |+|+|.|+|++||++|+++++++|+++|+ |++.++.
T Consensus       396 ~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~  463 (480)
T PLN02648        396 EEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT  463 (480)
T ss_pred             ceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence            99999999864322   11234444         67789999999999999999999999998 9987654


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=1.6e-55  Score=415.18  Aligned_cols=352  Identities=23%  Similarity=0.386  Sum_probs=295.0

Q ss_pred             CchhHHHHhhhcCCeEEEecCCcc--EEEecCHHHHHHHHHhcCcccCCCCC-Ccchh-hhccCCceEEEccCChhHHHH
Q 011227           60 PHHGLRDLSKKYGPLMLLQLGEVP--TIIVSSPEVAKEVMKTHDVVFASRPH-FPAAQ-ILSYNYRDIIFSSYGDSWKQL  135 (490)
Q Consensus        60 ~~~~~~~~~~~yG~v~~~~~~~~~--~vvv~~p~~v~~il~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~w~~~  135 (490)
                      +......+.+.||.++.+...+.-  +++++++++++++++++. .++.... ..... .....+...++..||+.|.++
T Consensus        24 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~~v~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~  102 (411)
T COG2124          24 PRFFLERAEDPYGDYFTLRLPGPGDGFWVVSRPADVREVLRDPR-FFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRL  102 (411)
T ss_pred             hhhhHHHHhCCCchhhhhhccCccceEEEEcCHHHHHHHHcCcc-cccccccccccccchhhhccccceeecCCHHHHHH
Confidence            455667788899999988876654  899999999999999874 1221111 11110 112224444788999999999


Q ss_pred             HhhhHHhhccHHHHhhhHHHHHHHHHHHHHHHHhcCCCceehhHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhh
Q 011227          136 RKICVSELLSAKRVQSFQSIREAEVSDLINWISSKAGSVINLTQNVHSLMYGITSRAAFGNRSRDQEAFVAVIEETTKVI  215 (490)
Q Consensus       136 R~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~vdl~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~~~~~~~~~  215 (490)
                      ||+ +.+.|+++.++.|.+.+.+.+.++++.+ ... +.+++.+.+..++.++++ .+||.+.++...+..+........
T Consensus       103 Rkl-~~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~~-~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~~~~~~~~~~~~~~~  178 (411)
T COG2124         103 RKL-LAPAFTPRALRGYRPLIREIADRLLDDL-WQG-GADLVLDFAAELTLRVIA-ELLGVPLEDRPQLLRWSDALLLRL  178 (411)
T ss_pred             HHH-hccccCHHHHHHHHHHHHHHHHHHHHhc-ccC-CchhHHHHhhhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHhcc
Confidence            999 6899999999999999999999999998 444 778889999999999999 999999988777777766665542


Q ss_pred             c-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCccHHHHHHhhhcCCCCCcccchhHHHH---HHHh
Q 011227          216 S-----GFNIADVETLHQEGVRIVENIINEHKKRKATLKNCKTGDDEDLVDVLLKIQGHGDLDSFLTTDHIKA---DIFA  287 (490)
Q Consensus       216 ~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~~i~~---~~l~  287 (490)
                      .     ........++...+.+++.++|++++..          ..+|+++.|+.+.++++  ..++++++.+   ++++
T Consensus       179 ~~~~~~~~~~~~~~~a~~~~~~~~~~li~~rR~~----------~~~dlls~l~~a~~~~~--~~lsd~Ei~~~~~~ll~  246 (411)
T COG2124         179 DPDLGPEEPWRRARAARRELDAYLRALIAERRAA----------PRDDLLSLLLSAEDDGG--GRLSDDEIRDELITLLV  246 (411)
T ss_pred             CcccCCcccHHHHHHHHHHHHHHHHHHHHHhccC----------CcccHHHHHHHHhhCCC--CcCCHHHHHHHHHHHHH
Confidence            1     1113334677888888999999888721          67999999999877664  2589999988   7789


Q ss_pred             cccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhcCCCCCCcccccCChhHHHHHHhhcCCCCCCCCCCccccccccee
Q 011227          288 AGSETSATTVDWAMCEMMKNPRVMKKAQAEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHPAAPLLIPRECGQRCQI  367 (490)
Q Consensus       288 ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~~l~~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l  367 (490)
                      ||+|||+++++|++|.|++||++++++++|.+.                ||+.++++|+||++||++. .+|.+.+|+++
T Consensus       247 AGheTTa~~l~~a~~~L~~~P~~~~~l~~e~~~----------------~~~~~~v~E~LR~~ppv~~-~~R~~~~d~~i  309 (411)
T COG2124         247 AGHETTANALAWALYALLRHPDQLAKLRAEPDR----------------PLLEAVVEETLRLYPPVPL-ARRVATEDVEL  309 (411)
T ss_pred             hhhHHHHHHHHHHHHHHHHCchHHHHHHhCcch----------------HHHHHHHHHHHHhCCchhc-cceeccCCEee
Confidence            999999999999999999999999999997653                8999999999999999999 57999999999


Q ss_pred             cceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCCCCCccccccCCCCCCCCChhhHHHHhHHHHHHhHhc
Q 011227          368 NGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYKGTNFEYIPFGAGRRICPGMSFGLASVELPLAMLLYH  447 (490)
Q Consensus       368 ~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~  447 (490)
                      +|+.||||+.|+++++++||||++|++|++|||+||.          ..|+|||+|+|.|+|++||++|++++++.|+++
T Consensus       310 gg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r  379 (411)
T COG2124         310 GGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRR  379 (411)
T ss_pred             CCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999985          469999999999999999999999999999999


Q ss_pred             cceecCCC
Q 011227          448 FDWKLPNG  455 (490)
Q Consensus       448 f~~~~~~~  455 (490)
                      |++....+
T Consensus       380 ~~~~~~~~  387 (411)
T COG2124         380 FPLLLLAE  387 (411)
T ss_pred             CchhhcCC
Confidence            99987655


No 33 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=72.04  E-value=2.5  Score=27.22  Aligned_cols=8  Identities=50%  Similarity=0.817  Sum_probs=6.3

Q ss_pred             CcccccCC
Q 011227          399 IPERFLDH  406 (490)
Q Consensus       399 ~P~Rf~~~  406 (490)
                      ||||||.-
T Consensus        44 DPERWLP~   51 (59)
T PF08492_consen   44 DPERWLPK   51 (59)
T ss_pred             CccccCch
Confidence            88899863


No 34 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=49.49  E-value=18  Score=23.17  Aligned_cols=17  Identities=24%  Similarity=0.489  Sum_probs=15.3

Q ss_pred             HHHHHHhCcHHHHHHHH
Q 011227          300 AMCEMMKNPRVMKKAQA  316 (490)
Q Consensus       300 ~l~~L~~~p~~~~~l~~  316 (490)
                      .+.+|.+||++.+++.+
T Consensus         5 iV~YLv~nPevl~kl~~   21 (57)
T PF05952_consen    5 IVNYLVQNPEVLEKLKE   21 (57)
T ss_pred             HHHHHHHChHHHHHHHc
Confidence            56799999999999987


No 35 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=45.77  E-value=17  Score=28.00  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=17.5

Q ss_pred             CCCCChhhHHHHhHHHHHHhHhcc
Q 011227          425 RICPGMSFGLASVELPLAMLLYHF  448 (490)
Q Consensus       425 r~C~G~~~A~~~~~~~l~~ll~~f  448 (490)
                      ..|.|+.||+.++-.++.+|+.+-
T Consensus        18 yN~~gKKFsE~QiN~FIs~lItsP   41 (148)
T PF09201_consen   18 YNCLGKKFSETQINAFISHLITSP   41 (148)
T ss_dssp             EETTS----HHHHHHHHHHHHHS-
T ss_pred             ecccchHHHHHHHHHHHHHHhcCC
Confidence            479999999999999999999864


No 36 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=43.33  E-value=19  Score=30.30  Aligned_cols=44  Identities=20%  Similarity=0.157  Sum_probs=30.8

Q ss_pred             CChhHHHHHHhhcCCCCCCCCCCcccccccceecceecCCCCEEEe
Q 011227          335 EMKFLKLVVKETLRLHPAAPLLIPRECGQRCQINGFDIPVKARVIV  380 (490)
Q Consensus       335 ~l~~l~a~i~EtlRl~p~~~~~~~R~~~~~~~l~g~~Ip~g~~v~~  380 (490)
                      .-..+.|||.|+.-...-...-  -+..+|+.++|..|||||.+..
T Consensus        51 ~~n~I~A~V~~~qtv~~Gs~vr--lRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   51 EKNTIRAVVDGTQTVVDGSRVR--LRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCCeEEEEEecceEEeCCCEEE--EEEcCceEECCEEeCCCCEEEE
Confidence            3455778888887665433222  3457899999999999987654


No 37 
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=41.10  E-value=1.2e+02  Score=29.25  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             hhcCCeEEEecCCccEEEecCHHHHHHHHHhcCcccC
Q 011227           69 KKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHDVVFA  105 (490)
Q Consensus        69 ~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~~~~~  105 (490)
                      -+||.|++-.+.++.+.|=.=|..-++=+.++...|+
T Consensus       221 Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~  257 (534)
T KOG3653|consen  221 GRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYS  257 (534)
T ss_pred             CccceeehhhccCceeEEEecCHHHHHHHHhHHHHHh
Confidence            4788888888777655443334434444444444554


No 38 
>PRK06789 flagellar motor switch protein; Validated
Probab=39.27  E-value=27  Score=23.85  Aligned_cols=40  Identities=8%  Similarity=0.106  Sum_probs=31.6

Q ss_pred             HHHhhcCCCCCCCCCCcccccccc--eecceecCCCCEEEec
Q 011227          342 VVKETLRLHPAAPLLIPRECGQRC--QINGFDIPVKARVIVN  381 (490)
Q Consensus       342 ~i~EtlRl~p~~~~~~~R~~~~~~--~l~g~~Ip~g~~v~~~  381 (490)
                      -++|-+.+.+-......|.+.+++  .++|..|.+|..|.++
T Consensus        21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~   62 (74)
T PRK06789         21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN   62 (74)
T ss_pred             EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence            368889998887776667777654  5599999999998775


No 39 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=36.42  E-value=16  Score=22.80  Aligned_cols=11  Identities=45%  Similarity=0.918  Sum_probs=9.2

Q ss_pred             cccCCCCCCCC
Q 011227          418 IPFGAGRRICP  428 (490)
Q Consensus       418 ~~Fg~G~r~C~  428 (490)
                      -+||-|+|.|-
T Consensus        12 ~kfg~GsrsC~   22 (56)
T KOG3506|consen   12 RKFGQGSRSCR   22 (56)
T ss_pred             cccCCCCccee
Confidence            47999999885


No 40 
>PHA03162 hypothetical protein; Provisional
Probab=34.04  E-value=39  Score=25.78  Aligned_cols=25  Identities=20%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             CCCCCCCCChhhHHHHhHHHHHHhH
Q 011227          421 GAGRRICPGMSFGLASVELPLAMLL  445 (490)
Q Consensus       421 g~G~r~C~G~~~A~~~~~~~l~~ll  445 (490)
                      ++|++.|||+.+.+-++..=|+.|=
T Consensus         2 ~~~~k~~pk~~~tmEeLaaeL~kLq   26 (135)
T PHA03162          2 AGGSKKCPKAQPTMEDLAAEIAKLQ   26 (135)
T ss_pred             CCCcCCCCccCCCHHHHHHHHHHHH
Confidence            5699999999999888877777663


No 41 
>PF15183 MRAP:  Melanocortin-2 receptor accessory protein family
Probab=33.37  E-value=1.4e+02  Score=20.77  Aligned_cols=8  Identities=38%  Similarity=1.049  Sum_probs=3.6

Q ss_pred             CCCCCCCC
Q 011227           37 SNPPPGPW   44 (490)
Q Consensus        37 ~~~ppgp~   44 (490)
                      ++.++.|+
T Consensus        73 k~~~~~p~   80 (90)
T PF15183_consen   73 KHHPMCPW   80 (90)
T ss_pred             ccCCCCCc
Confidence            34445554


No 42 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red;  InterPro: IPR020999  RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. 
Probab=31.45  E-value=19  Score=27.93  Aligned_cols=7  Identities=14%  Similarity=0.321  Sum_probs=3.1

Q ss_pred             HHhhccc
Q 011227           25 KLEKRSQ   31 (490)
Q Consensus        25 ~~~~~~~   31 (490)
                      +-.++++
T Consensus        22 ~~rRR~r   28 (130)
T PF12273_consen   22 HNRRRRR   28 (130)
T ss_pred             HHHHHhh
Confidence            3344554


No 43 
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=28.11  E-value=1e+02  Score=19.34  Aligned_cols=14  Identities=43%  Similarity=0.596  Sum_probs=5.4

Q ss_pred             CcccchhHhHHHHH
Q 011227            1 MELLGLSTTSSILL   14 (490)
Q Consensus         1 m~~~~~~~~~~~~~   14 (490)
                      |+.+-+.++..+++
T Consensus         1 M~il~~LIpiSl~l   14 (51)
T TIGR00847         1 MEILTILIPISLLL   14 (51)
T ss_pred             CchHHHHHHHHHHH
Confidence            44443333333333


No 44 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=27.63  E-value=98  Score=19.08  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=29.1

Q ss_pred             HHHhcccccHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 011227          284 DIFAAGSETSATTVDWAMCEMMKNPRVMKKAQAEV  318 (490)
Q Consensus       284 ~~l~ag~~tt~~~l~~~l~~L~~~p~~~~~l~~Ei  318 (490)
                      .++-.|.|..+-.++-.|.+..-||+.+..+..|+
T Consensus        13 ~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen   13 DLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            46677888888888888888888999998888876


No 45 
>PF15330 SIT:  SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.56  E-value=1.5e+02  Score=22.06  Aligned_cols=10  Identities=40%  Similarity=0.451  Sum_probs=6.2

Q ss_pred             CCCccccccc
Q 011227           45 KLPVIGNLYQ   54 (490)
Q Consensus        45 ~~p~~G~~~~   54 (490)
                      .-|+.||+-.
T Consensus        45 ~~p~YgNL~~   54 (107)
T PF15330_consen   45 DDPCYGNLEL   54 (107)
T ss_pred             CCcccccccc
Confidence            4667777643


No 46 
>PF12444 Sox_N:  Sox developmental protein N terminal ;  InterPro: IPR022151  This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes. 
Probab=26.51  E-value=43  Score=23.54  Aligned_cols=20  Identities=20%  Similarity=0.494  Sum_probs=17.4

Q ss_pred             HHhHHHHHHhHhccceecCC
Q 011227          435 ASVELPLAMLLYHFDWKLPN  454 (490)
Q Consensus       435 ~~~~~~l~~ll~~f~~~~~~  454 (490)
                      .-++-++.++|+-|||.|.+
T Consensus        60 ~~IrdAVsqVLkGYDWtLVP   79 (84)
T PF12444_consen   60 VCIRDAVSQVLKGYDWTLVP   79 (84)
T ss_pred             HHHHHHHHHHhccCCceeee
Confidence            35788999999999999975


No 47 
>PF15300 INT_SG_DDX_CT_C:  INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=25.58  E-value=30  Score=22.89  Aligned_cols=16  Identities=25%  Similarity=0.688  Sum_probs=13.0

Q ss_pred             CChhHHHHHHhhcCCC
Q 011227          335 EMKFLKLVVKETLRLH  350 (490)
Q Consensus       335 ~l~~l~a~i~EtlRl~  350 (490)
                      +..+++.+|+|++|+.
T Consensus        39 r~~fv~~~IkEA~RFk   54 (65)
T PF15300_consen   39 RKQFVEMIIKEAARFK   54 (65)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4458999999999973


No 48 
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl    5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and    metabolism]
Probab=25.22  E-value=1.1e+02  Score=27.82  Aligned_cols=70  Identities=13%  Similarity=0.176  Sum_probs=42.2

Q ss_pred             HHHHHHhhcCCCCCCCCC---Cccccccccee----cceecCCCCEEEeccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 011227          339 LKLVVKETLRLHPAAPLL---IPRECGQRCQI----NGFDIPVKARVIVNAWAIGRDPEYWTEPESFIPERFLDHSVDYK  411 (490)
Q Consensus       339 l~a~i~EtlRl~p~~~~~---~~R~~~~~~~l----~g~~Ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~Rf~~~~~~~~  411 (490)
                      -+.+++.|..+.||....   +.-.++.|..+    =.-+|.+||.|.++                              
T Consensus       275 ger~V~a~kel~~PG~iGpFcLq~~~t~dl~~vVfevS~Ri~gGTNv~~~------------------------------  324 (361)
T COG1759         275 GERFVEATKELVPPGIIGPFCLQTIVTDDLEFVVFEVSARIVGGTNVYMG------------------------------  324 (361)
T ss_pred             HHHHHHHHHHhcCCCcccceeeeeeecCCccEEEEEEeccccCCcccccC------------------------------
Confidence            356788889999986554   22222333333    12456666655332                              


Q ss_pred             CCCccccccCCCCCCCCChhhHHHHhHHHH
Q 011227          412 GTNFEYIPFGAGRRICPGMSFGLASVELPL  441 (490)
Q Consensus       412 ~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l  441 (490)
                      +++++++-||-+  +-.|+.+|. |+|.++
T Consensus       325 GspYs~l~~~~p--ms~GrRIA~-EIk~A~  351 (361)
T COG1759         325 GSPYSNLYWGEP--MSTGRRIAR-EIKEAI  351 (361)
T ss_pred             CCcchhhhcCCC--cchhhHHHH-HHHHHH
Confidence            245566667655  778999998 777665


No 49 
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=24.85  E-value=2.8e+02  Score=20.51  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCchhHHHHhhhcCCeEEEecCC------ccEEEecCHHHHHHHHHh
Q 011227           36 ISNPPPGPWKLPVIGNLYQLAGSLPHHGLRDLSKKYGPLMLLQLGE------VPTIIVSSPEVAKEVMKT   99 (490)
Q Consensus        36 ~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~yG~v~~~~~~~------~~~vvv~~p~~v~~il~~   99 (490)
                      ..+.||-...+-++.|+..   +--.+-+.++.-+||+|..+++|.      .-+||-.|-.+.+....+
T Consensus        10 ~~rlppevnriLyirNLp~---~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh   76 (124)
T KOG0114|consen   10 NIRLPPEVNRILYIRNLPF---KITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH   76 (124)
T ss_pred             CCCCChhhheeEEEecCCc---cccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH
Confidence            3455566566666777642   233456788889999999999864      345666666666655543


No 50 
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=24.63  E-value=48  Score=23.35  Aligned_cols=18  Identities=22%  Similarity=0.506  Sum_probs=15.6

Q ss_pred             CcHHHHHHHHHHHHhhcC
Q 011227          307 NPRVMKKAQAEVREVFHR  324 (490)
Q Consensus       307 ~p~~~~~l~~Ei~~~~~~  324 (490)
                      .|+..+.+|+||.+|+..
T Consensus        35 ~pd~l~~Lr~eIl~VI~K   52 (88)
T COG0851          35 QPDYLEQLRKEILEVISK   52 (88)
T ss_pred             CcchHHHHHHHHHHHHHH
Confidence            388999999999999754


No 51 
>PF13625 Helicase_C_3:  Helicase conserved C-terminal domain
Probab=22.63  E-value=1.6e+02  Score=22.63  Aligned_cols=40  Identities=18%  Similarity=0.424  Sum_probs=30.3

Q ss_pred             CchhHHHHhhhcCCeEEEecCCccEEEecCHHHHHHHHHhcC
Q 011227           60 PHHGLRDLSKKYGPLMLLQLGEVPTIIVSSPEVAKEVMKTHD  101 (490)
Q Consensus        60 ~~~~~~~~~~~yG~v~~~~~~~~~~vvv~~p~~v~~il~~~~  101 (490)
                      ....+.+|.++||.+--..  +...+...|++..+++..++.
T Consensus        76 v~~~i~~w~~~~g~v~l~~--~~~~l~~~d~~~l~~l~~~~~  115 (129)
T PF13625_consen   76 VEQSIEDWARRYGRVRLYK--GAYLLECDDPELLDELLADPE  115 (129)
T ss_pred             HHHHHHHHHHhcCCEEEec--CeEEEEECCHHHHHHHHhChh
Confidence            3456899999999855422  456788999999999988643


No 52 
>PF08569 Mo25:  Mo25-like;  InterPro: IPR013878  Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.80  E-value=6.6e+02  Score=23.43  Aligned_cols=39  Identities=8%  Similarity=0.063  Sum_probs=25.3

Q ss_pred             HHHHHhC-cHHHHHHHHHHHHhhcCCCCCCcccccCChhHHHHHHhhcCCCC
Q 011227          301 MCEMMKN-PRVMKKAQAEVREVFHRTGKVNETSIDEMKFLKLVVKETLRLHP  351 (490)
Q Consensus       301 l~~L~~~-p~~~~~l~~Ei~~~~~~~~~~~~~~l~~l~~l~a~i~EtlRl~p  351 (490)
                      .-+|.+| |++...|.+-            ++..+-.-....+++|++|..+
T Consensus       116 v~yl~~~~peil~~L~~g------------y~~~dial~~g~mlRec~k~e~  155 (335)
T PF08569_consen  116 VDYLERHRPEILDILLRG------------YENPDIALNCGDMLRECIKHES  155 (335)
T ss_dssp             HHHHHT--THHHHHHHHG------------GGSTTTHHHHHHHHHHHTTSHH
T ss_pred             HHHHHhCCHHHHHHHHHH------------hcCccccchHHHHHHHHHhhHH
Confidence            6788888 9998888761            2222223346778889998754


No 53 
>PRK13685 hypothetical protein; Provisional
Probab=21.27  E-value=1.2e+02  Score=28.17  Aligned_cols=17  Identities=24%  Similarity=0.397  Sum_probs=11.8

Q ss_pred             CcccchhHhHHHHHHHH
Q 011227            1 MELLGLSTTSSILLAIL   17 (490)
Q Consensus         1 m~~~~~~~~~~~~~~~~   17 (490)
                      |+|+++.-+.+++++++
T Consensus         1 ~~~~~F~~P~~l~ll~~   17 (326)
T PRK13685          1 MSLSGFAHPWFFLFLLV   17 (326)
T ss_pred             CCccchhhHHHHHHHHH
Confidence            78888887766554444


No 54 
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=20.79  E-value=1.6e+02  Score=18.89  Aligned_cols=14  Identities=50%  Similarity=0.574  Sum_probs=6.3

Q ss_pred             CcccchhHhHHHHH
Q 011227            1 MELLGLSTTSSILL   14 (490)
Q Consensus         1 m~~~~~~~~~~~~~   14 (490)
                      |+...+.+++.+++
T Consensus         1 m~~l~~Lipvsi~l   14 (58)
T COG3197           1 MEILYILIPVSILL   14 (58)
T ss_pred             CceeeeHHHHHHHH
Confidence            45544444444433


No 55 
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=20.10  E-value=1.1e+02  Score=22.00  Aligned_cols=9  Identities=22%  Similarity=0.689  Sum_probs=5.7

Q ss_pred             CcccchhHh
Q 011227            1 MELLGLSTT    9 (490)
Q Consensus         1 m~~~~~~~~    9 (490)
                      |+|+-+..+
T Consensus         1 m~mF~iG~~    9 (90)
T PRK14857          1 MNIFGIGLP    9 (90)
T ss_pred             CCcccccHH
Confidence            777765544


Done!