BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011229
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/265 (38%), Positives = 157/265 (59%), Gaps = 4/265 (1%)
Query: 59 DAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFG 118
D+ + KA+ LR+ L+ + R DD +LRFL+ARKFD++ K+M+ + +WRK++G
Sbjct: 27 DSAQEKALAELRK-LLEDAGFIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84
Query: 119 TDDIMQDFEFKELSQVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYH 178
TD I+QDF + E + + YP +H DK+G+PVY E LG V+ ++ +VT+ ER L
Sbjct: 85 TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144
Query: 179 VREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYP 238
V E+E + PACS AA ++ S TI+D++G+ + S + + + I + YP
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISS-AYSVMSYVREASYISQNYYP 203
Query: 239 ETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGG 298
E + + +IINA GF + K FLDP T +KI +LG+ YQ +LL+ I A LP GG
Sbjct: 204 ERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGG 263
Query: 299 SCTCAD-QGGCMRSDKGPWKDPDIL 322
+ +GG SD GPW+DP +
Sbjct: 264 KSEVDESKGGLYLSDIGPWRDPKYI 288
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 149/256 (58%), Gaps = 9/256 (3%)
Query: 71 QALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEF-- 128
++++LE+ R DD +LRFL+ARKFDI + +M+ + +WR+E+G + I++D+E
Sbjct: 47 RSILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNK 105
Query: 129 ----KELSQVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFER 184
KE ++ + YP +H VDK+G+P+Y E LG ++ K+ ++T ++ L V+E+E
Sbjct: 106 EAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYEL 165
Query: 185 TFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRM 244
+ PACS A I+ S T+LD++G+ L S I + I + YPE + +
Sbjct: 166 FATYRVPACSRRAGYLIETSCTVLDLKGISL-SNAYHVLSYIKDVADISQNYYPERMGKF 224
Query: 245 FIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTCAD 304
+II++ GF ++ +K FLDP T +KI +LG+ Y+ +LL+ I LP GG+ +
Sbjct: 225 YIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHN 284
Query: 305 QGG-CMRSDKGPWKDP 319
SD GPW+DP
Sbjct: 285 PNDKFYYSDIGPWRDP 300
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 148/256 (57%), Gaps = 9/256 (3%)
Query: 71 QALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEF-- 128
++++LE+ R DD +LRFL+ARKFDI + +M+ + +WR+E+G + I++D+E
Sbjct: 47 RSILLEKNYKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNK 105
Query: 129 ----KELSQVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFER 184
KE ++ + YP +H VDK+G+P+Y LG ++ K+ ++T ++ L V+E+E
Sbjct: 106 EAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYEL 165
Query: 185 TFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRM 244
+ PACS A I+ S T+LD++G+ L S I + I + YPE + +
Sbjct: 166 FATYRVPACSRRAGYLIETSCTVLDLKGISL-SNAYHVLSYIKDVADISQNYYPERMGKF 224
Query: 245 FIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTCAD 304
+II++ GF ++ +K FLDP T +KI +LG+ Y+ +LL+ I LP GG+ +
Sbjct: 225 YIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVLHN 284
Query: 305 QGG-CMRSDKGPWKDP 319
SD GPW+DP
Sbjct: 285 PNDKFYYSDIGPWRDP 300
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 134/271 (49%), Gaps = 39/271 (14%)
Query: 75 LEELLPS--RHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELS 132
++++LP+ DDY +LR+L+AR FD++K++ M +++RK+ D+I+ + +
Sbjct: 23 VQDVLPALPNPDDY-FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQ 81
Query: 133 QVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPA 192
Q L G G D +G PV+ + +G +DA L+ + + L +RE E +
Sbjct: 82 QYLS---GGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE----LLLQE 134
Query: 193 CSIAAKK---HIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINA 249
C+ K ++ T I D +G+GLK K A E + + +NYPETL R+F++ A
Sbjct: 135 CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKA 194
Query: 250 GSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTCADQGGCM 309
F + +N IK FL T KI VLG ++ LL+ I ++P GG+ T
Sbjct: 195 PKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMT-------- 246
Query: 310 RSDKGPWKDPDILKMVQNGDHKCK---NMGG 337
DPD G+ KCK N GG
Sbjct: 247 --------DPD-------GNPKCKSKINYGG 262
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 134/271 (49%), Gaps = 39/271 (14%)
Query: 75 LEELLPS--RHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELS 132
++++LP+ DDY +LR+L+AR FD++K++ M +++RK+ D+I+ + +
Sbjct: 23 VQDVLPALPNPDDY-FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQ 81
Query: 133 QVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPA 192
Q L G G D +G PV+ + +G +DA L+ + + L +RE E +
Sbjct: 82 QYLS---GGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECE----LLLQE 134
Query: 193 CSIAAKK---HIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINA 249
C+ K ++ T I D +G+GLK K A E + + +NYPETL R+F++ A
Sbjct: 135 CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKA 194
Query: 250 GSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTCADQGGCM 309
F + +N IK FL T KI VLG ++ LL+ I ++P GG+ T
Sbjct: 195 PKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMT-------- 246
Query: 310 RSDKGPWKDPDILKMVQNGDHKCK---NMGG 337
DPD G+ KCK N GG
Sbjct: 247 --------DPD-------GNPKCKSKINYGG 262
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 131/271 (48%), Gaps = 39/271 (14%)
Query: 75 LEELLPS--RHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELS 132
++++LP+ DDY +LR+L+AR FD++K++ +++RK+ D+I+ + +
Sbjct: 23 VQDVLPALPNPDDY-FLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIISWQPPEVIQ 81
Query: 133 QVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPA 192
Q L G G D +G PV+ + +G +DA L+ + + L RE E +
Sbjct: 82 QYLS---GGXCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKXRECE----LLLQE 134
Query: 193 CSIAAKK---HIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINA 249
C+ K ++ T I D +G+GLK K A E + +NYPETL R+F++ A
Sbjct: 135 CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKA 194
Query: 250 GSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTCADQGGCM 309
F + +N IK FL T KI VLG ++ LL+ I ++P GG+ T
Sbjct: 195 PKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVPVEYGGTXT-------- 246
Query: 310 RSDKGPWKDPDILKMVQNGDHKCK---NMGG 337
DPD G+ KCK N GG
Sbjct: 247 --------DPD-------GNPKCKSKINYGG 262
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 88 MMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQVLECYPHGHHGV-- 145
+LRFL+AR FD++ ++ + +WR E +I D + + +L+ G+HGV
Sbjct: 51 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLR 105
Query: 146 --DKEGQPVYIERLGLVD-----ATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAK 198
D G V I R+ D A + +V+ + L E +R IK
Sbjct: 106 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRN-GIK--------- 155
Query: 199 KHIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWN 258
I D++G + + +I + D++P + + +IN F +++
Sbjct: 156 -------AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFS 208
Query: 259 TIKSFLDPKTTAKIHVLGNKYQSKLLE 285
IK FL K +IH+ GN Y+ LL+
Sbjct: 209 MIKPFLTEKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 89/207 (42%), Gaps = 31/207 (14%)
Query: 88 MMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQVLECYPHGHHGV-- 145
+LRFL+AR FD++ ++ + +WR E +I D + + +L+ G+HGV
Sbjct: 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAE--CPEISADLHPRSIIGLLKA---GYHGVLR 89
Query: 146 --DKEGQPVYIERLGLVD-----ATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAK 198
D G V I R+ D A + +V+ + L E +R IK
Sbjct: 90 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRN-GIK--------- 139
Query: 199 KHIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWN 258
I D++G + + +I + D++P + + +IN F +++
Sbjct: 140 -------AIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFS 192
Query: 259 TIKSFLDPKTTAKIHVLGNKYQSKLLE 285
IK FL K +IH GN Y+ LL+
Sbjct: 193 XIKPFLTEKIKERIHXHGNNYKQSLLQ 219
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/289 (19%), Positives = 117/289 (40%), Gaps = 31/289 (10%)
Query: 36 RHSLKRGRRSSKVMSVVEIEDVHDAEE-IKAVDALRQALILEELLPSRHDDYHMMLRFLK 94
RH+L++ + E V + +E ++A A + L + + D LRF++
Sbjct: 41 RHTLQKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIR 100
Query: 95 ARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQVLEC-YPHGHHGVDKEGQPVY 153
ARKF++ + ++ + +R ++ ++ + + +E YP DK G
Sbjct: 101 ARKFNVGRAYELLRGYVNFRLQY--PELFDSLSPEAVRCTIEAGYPGVLSSRDKYG---- 154
Query: 154 IERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILD---- 209
+++ + N+E + + + TFD A +K ++ T ++
Sbjct: 155 ----------RVVMLFNIENWQSQEI-----TFDEILQAYCFILEKLLENEETQINGFCI 199
Query: 210 VQGVGLKSFNKAARELITQIQK-ID--GDNYPETLNRMFIINAGSGFRMLWNTIKSFLDP 266
++ + +AA + ++K +D D++P + I+ F +N +K FL
Sbjct: 200 IENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKS 259
Query: 267 KTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTCADQGGCMRSDKGP 315
K ++ V G+ S + ID + LP GG+ D GP
Sbjct: 260 KLLERVFVHGDDL-SGFYQEIDENILPSDFGGTLPKYDGKAVAEQLFGP 307
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 117/289 (40%), Gaps = 31/289 (10%)
Query: 36 RHSLKRGRRSSKVMSVVEIEDVHDAEE-IKAVDALRQALILEELLPSRHDDYHMMLRFLK 94
RH+L++ + E V + +E ++A A + L + + D LRF++
Sbjct: 41 RHTLQKAKDELNEREETREEAVRELQEXVQAQAASGEELAVAVAERVQEKDSGFFLRFIR 100
Query: 95 ARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQVLEC-YPHGHHGVDKEGQPVY 153
ARKF++ + ++ + +R ++ ++ + + +E YP DK G
Sbjct: 101 ARKFNVGRAYELLRGYVNFRLQY--PELFDSLSPEAVRCTIEAGYPGVLSSRDKYG---- 154
Query: 154 IERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGV 213
+++ + N+E + + + TFD A +K ++ T ++ +
Sbjct: 155 ----------RVVXLFNIENWQSQEI-----TFDEILQAYCFILEKLLENEETQINGFCI 199
Query: 214 --GLKSF--NKAARELITQIQK-IDG--DNYPETLNRMFIINAGSGFRMLWNTIKSFLDP 266
K F +AA + ++K +D D++P + I+ F +N +K FL
Sbjct: 200 IENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKS 259
Query: 267 KTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTCADQGGCMRSDKGP 315
K ++ V G+ S + ID + LP GG+ D GP
Sbjct: 260 KLLERVFVHGDDL-SGFYQEIDENILPSDFGGTLPKYDGKAVAEQLFGP 307
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 172 ERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQG---VGLKSFNKAARELITQ 228
R+LN V E +T I F C D++ +L G G +F++ L+
Sbjct: 13 SRFLN--VEEAGKTLRIHFNDCGQG-----DETVVLLHGSGPGATGWANFSRNIDPLVEA 65
Query: 229 IQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNK 278
++ + P ++N+GS + +KS +D AKIH+LGN
Sbjct: 66 GYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNS 115
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 16/191 (8%)
Query: 110 MLQWRKEFG-----TDDIMQDF------EFKELSQVLECYPHGHHGVDKEGQPVYIERLG 158
M+ W +FG I+ +F ++ +LS V+ PHGH G + IER
Sbjct: 611 MVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFL 670
Query: 159 LVDATKLMQVTNMERYLNY-HVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKS 217
+ A M + NY H+ I+ P K + + D++
Sbjct: 671 QLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESK 730
Query: 218 FNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGN 277
F R ++ + DG+ + R+ + + + + K + +I L
Sbjct: 731 F----RSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRIEQLAP 786
Query: 278 KYQSKLLEIID 288
+ +L E +D
Sbjct: 787 LPRRRLAETLD 797
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic
Form)
Length = 1113
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 69/191 (36%), Gaps = 16/191 (8%)
Query: 110 MLQWRKEFG-----TDDIMQDF------EFKELSQVLECYPHGHHGVDKEGQPVYIERLG 158
M+ W +FG I+ +F ++ +LS V+ PHGH G + IER
Sbjct: 856 MVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEGQGPDHTSGRIERFL 915
Query: 159 LVDATKLMQVTNMERYLNY-HVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKS 217
+ A M + NY H+ I+ P K + + D++
Sbjct: 916 QLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESK 975
Query: 218 FNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGN 277
F R ++ + DG+ + R+ + + + + K + +I L
Sbjct: 976 F----RSVLEEPMYTDGEGDRNKVTRLLLTSGKIYYELAARKAKENREDVAIVRIEQLAP 1031
Query: 278 KYQSKLLEIID 288
+ +L E +D
Sbjct: 1032 LPRRRLAETLD 1042
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 338 AQKPEEKTISEDETISFKLF----TGVMAFVMGIVTMIRVTKNMPKKLTDATIYSNPGYN 393
QK EK E+ +FKLF TG ++F + RV K + + LTD +
Sbjct: 1 TQKMSEKDTKEEILKAFKLFDDDETGKISFK----NLKRVAKELGENLTDEELQE----M 52
Query: 394 VDEVDRHKSTPGIYGAEYIAVMKRMA 419
+DE DR + E++ +MK+ +
Sbjct: 53 IDEADRDGDGE-VSEQEFLRIMKKTS 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,028,089
Number of Sequences: 62578
Number of extensions: 573822
Number of successful extensions: 1368
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1342
Number of HSP's gapped (non-prelim): 36
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)