Query 011229
Match_columns 490
No_of_seqs 316 out of 1529
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 23:02:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 3.1E-46 6.7E-51 380.6 24.1 271 59-332 19-292 (317)
2 KOG1470 Phosphatidylinositol t 100.0 6.3E-38 1.4E-42 313.6 18.1 198 85-302 48-245 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 1.2E-30 2.6E-35 238.2 9.6 156 134-299 3-159 (159)
4 smart00516 SEC14 Domain in hom 100.0 2.3E-28 5E-33 222.8 14.6 154 134-301 5-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3.4E-25 7.4E-30 199.3 14.5 144 143-299 14-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.4 7.5E-14 1.6E-18 127.0 3.6 138 143-302 7-146 (149)
7 PF03765 CRAL_TRIO_N: CRAL/TRI 98.7 2.4E-08 5.1E-13 76.0 5.4 47 63-110 1-55 (55)
8 KOG4406 CDC42 Rho GTPase-activ 98.0 2.8E-05 6.2E-10 80.5 9.1 125 145-290 89-213 (467)
9 COG4064 MtrG Tetrahydromethano 92.0 0.21 4.6E-06 39.4 3.7 29 401-429 5-35 (75)
10 TIGR01149 mtrG N5-methyltetrah 90.1 0.39 8.4E-06 38.0 3.6 24 406-429 9-32 (70)
11 PRK01026 tetrahydromethanopter 87.6 0.75 1.6E-05 37.3 3.7 24 406-429 12-35 (77)
12 PF04210 MtrG: Tetrahydrometha 85.2 1.1 2.4E-05 35.5 3.4 24 406-429 9-32 (70)
13 PF14555 UBA_4: UBA-like domai 66.9 20 0.00043 25.5 5.4 36 64-108 2-37 (43)
14 KOG1962 B-cell receptor-associ 52.8 75 0.0016 31.1 8.3 72 410-481 115-191 (216)
15 PF02845 CUE: CUE domain; Int 51.6 43 0.00093 23.6 4.9 38 64-109 3-40 (42)
16 COG1340 Uncharacterized archae 49.1 1.2E+02 0.0026 31.1 9.4 66 410-484 108-173 (294)
17 PHA01750 hypothetical protein 47.6 89 0.0019 24.7 6.3 42 441-484 30-71 (75)
18 TIGR03185 DNA_S_dndD DNA sulfu 47.6 82 0.0018 35.7 9.0 57 409-467 391-447 (650)
19 TIGR02132 phaR_Bmeg polyhydrox 47.5 76 0.0016 30.1 7.1 74 407-481 70-154 (189)
20 PHA02629 A-type inclusion body 44.7 69 0.0015 24.0 5.1 47 414-466 1-54 (61)
21 smart00546 CUE Domain that may 44.6 56 0.0012 23.0 4.6 38 64-109 4-41 (43)
22 PF12718 Tropomyosin_1: Tropom 42.4 1.2E+02 0.0026 27.6 7.5 69 408-476 34-108 (143)
23 PF05377 FlaC_arch: Flagella a 42.3 74 0.0016 24.4 5.1 15 417-431 1-15 (55)
24 KOG3313 Molecular chaperone Pr 40.7 1.7E+02 0.0036 27.8 8.2 64 421-484 20-86 (187)
25 PF10368 YkyA: Putative cell-w 40.7 1.2E+02 0.0027 29.2 7.8 76 408-483 31-110 (204)
26 PRK10884 SH3 domain-containing 39.3 1.2E+02 0.0025 29.5 7.4 73 413-485 90-169 (206)
27 KOG0612 Rho-associated, coiled 38.1 1.1E+02 0.0023 37.1 7.9 48 410-465 442-492 (1317)
28 KOG0249 LAR-interacting protei 37.7 2.2E+02 0.0047 32.8 9.8 75 407-481 171-249 (916)
29 PF13080 DUF3926: Protein of u 37.2 33 0.00072 24.6 2.3 23 458-483 13-35 (44)
30 PF08317 Spc7: Spc7 kinetochor 37.0 1.8E+02 0.0038 30.1 8.8 72 410-482 178-250 (325)
31 PF05276 SH3BP5: SH3 domain-bi 36.2 2.6E+02 0.0056 27.8 9.3 57 412-470 94-150 (239)
32 KOG1838 Alpha/beta hydrolase [ 35.4 2.4E+02 0.0053 30.3 9.6 91 146-261 121-217 (409)
33 PF10212 TTKRSYEDQ: Predicted 34.3 2.3E+02 0.005 31.3 9.3 34 441-474 462-509 (518)
34 PF05276 SH3BP5: SH3 domain-bi 34.1 2.4E+02 0.0051 28.1 8.7 75 410-484 143-227 (239)
35 PF01496 V_ATPase_I: V-type AT 33.8 1.5E+02 0.0032 34.4 8.3 64 419-482 204-271 (759)
36 PRK13182 racA polar chromosome 33.7 41 0.0009 31.8 3.2 67 408-482 91-162 (175)
37 PHA02562 46 endonuclease subun 33.6 1.4E+02 0.003 32.8 7.9 74 408-482 298-371 (562)
38 PF13234 rRNA_proc-arch: rRNA- 33.6 1.7E+02 0.0036 29.1 7.8 70 411-483 182-263 (268)
39 PHA00687 hypothetical protein 33.1 1E+02 0.0022 22.6 4.3 30 433-462 9-48 (56)
40 PF03961 DUF342: Protein of un 33.0 2.2E+02 0.0049 30.7 9.2 55 410-464 342-398 (451)
41 TIGR02132 phaR_Bmeg polyhydrox 33.0 1.8E+02 0.004 27.6 7.2 13 459-471 142-154 (189)
42 PF05529 Bap31: B-cell recepto 32.9 1.4E+02 0.0031 28.1 6.9 63 410-473 119-185 (192)
43 PF10805 DUF2730: Protein of u 32.2 2.3E+02 0.0049 24.4 7.3 33 408-440 34-66 (106)
44 PF14712 Snapin_Pallidin: Snap 31.9 1.1E+02 0.0023 25.2 5.2 33 451-483 10-42 (92)
45 PF11802 CENP-K: Centromere-as 31.8 2.9E+02 0.0063 28.0 8.8 40 407-446 50-89 (268)
46 PLN03214 probable enoyl-CoA hy 31.7 1.7E+02 0.0037 29.4 7.5 19 467-485 250-268 (278)
47 TIGR03752 conj_TIGR03752 integ 30.1 4.5E+02 0.0098 28.8 10.6 73 406-478 56-135 (472)
48 PF05335 DUF745: Protein of un 29.4 92 0.002 29.8 4.8 31 437-467 140-177 (188)
49 PF10158 LOH1CR12: Tumour supp 28.1 2.5E+02 0.0054 25.2 7.1 60 410-470 50-109 (131)
50 COG1842 PspA Phage shock prote 25.9 6.4E+02 0.014 24.8 10.3 61 408-478 58-118 (225)
51 PF14282 FlxA: FlxA-like prote 25.8 3.3E+02 0.0071 23.4 7.2 51 407-458 17-68 (106)
52 PF07426 Dynactin_p22: Dynacti 25.4 2.2E+02 0.0048 26.8 6.6 18 408-425 4-21 (174)
53 COG1382 GimC Prefoldin, chaper 24.9 1.6E+02 0.0035 26.1 5.1 20 447-466 26-45 (119)
54 KOG2267 Eukaryotic-type DNA pr 24.8 2.1E+02 0.0046 30.5 6.7 46 65-112 290-335 (475)
55 PF11221 Med21: Subunit 21 of 24.3 5.3E+02 0.012 23.3 9.7 60 414-481 78-137 (144)
56 smart00353 HLH helix loop heli 23.7 2.1E+02 0.0046 20.6 4.9 24 435-458 29-52 (53)
57 PF04378 RsmJ: Ribosomal RNA s 23.4 46 0.001 33.2 1.6 27 242-268 206-232 (245)
58 PF11471 Sugarporin_N: Maltopo 23.4 96 0.0021 24.1 3.1 12 413-424 29-40 (60)
59 cd07322 PriL_PriS_Eukaryotic E 22.9 4E+02 0.0086 28.5 8.6 44 65-110 227-270 (390)
60 PF06103 DUF948: Bacterial pro 22.6 3.6E+02 0.0078 22.0 6.7 44 441-484 26-69 (90)
61 smart00804 TAP_C C-terminal do 22.6 3.6E+02 0.0078 21.1 6.2 49 54-111 4-52 (63)
62 PF05308 Mito_fiss_reg: Mitoch 22.4 89 0.0019 31.3 3.4 20 445-464 119-138 (253)
63 COG2961 ComJ Protein involved 22.3 61 0.0013 32.6 2.2 26 242-267 237-262 (279)
64 smart00787 Spc7 Spc7 kinetocho 22.1 4.4E+02 0.0095 27.2 8.5 74 410-483 173-260 (312)
65 PF12718 Tropomyosin_1: Tropom 22.0 3.1E+02 0.0066 24.9 6.6 58 413-474 11-68 (143)
66 PF15027 DUF4525: Domain of un 22.0 89 0.0019 28.0 2.9 24 406-429 83-106 (138)
67 PF09789 DUF2353: Uncharacteri 21.9 3.2E+02 0.007 28.4 7.4 61 406-466 23-97 (319)
68 PF07426 Dynactin_p22: Dynacti 21.8 2.1E+02 0.0045 27.0 5.6 52 406-459 51-105 (174)
69 PHA03162 hypothetical protein; 21.6 2.2E+02 0.0049 25.6 5.4 47 435-481 52-99 (135)
70 PF13514 AAA_27: AAA domain 21.5 3.4E+02 0.0073 33.0 8.7 57 410-467 212-268 (1111)
71 KOG0837 Transcriptional activa 21.3 1.3E+02 0.0029 30.2 4.3 23 411-433 222-244 (279)
72 PF05812 Herpes_BLRF2: Herpesv 21.1 1.8E+02 0.0039 25.8 4.6 46 436-481 43-89 (118)
73 KOG0250 DNA repair protein RAD 21.0 4.4E+02 0.0095 31.8 9.0 69 416-484 710-784 (1074)
74 KOG2129 Uncharacterized conser 21.0 6.4E+02 0.014 27.3 9.3 75 408-482 200-288 (552)
75 COG4479 Uncharacterized protei 20.6 2.5E+02 0.0053 22.7 4.8 48 67-114 22-72 (74)
76 COG5104 PRP40 Splicing factor 20.6 2.6E+02 0.0057 30.3 6.5 32 436-467 323-354 (590)
77 PF15175 SPATA24: Spermatogene 20.1 3.1E+02 0.0068 25.3 6.0 58 408-469 2-59 (153)
78 COG4550 Predicted membrane pro 20.0 1.2E+02 0.0026 26.7 3.2 23 437-459 60-82 (120)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=380.56 Aligned_cols=271 Identities=45% Similarity=0.743 Sum_probs=246.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccchhhHhHHHHHhhc
Q 011229 59 DAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQVLECY 138 (490)
Q Consensus 59 ~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v~~~~ 138 (490)
++.+.+.++++| |+..+++++...+|+.+|+||||||+||+++|+++|.+++.||++++.|.|+.+ .....++.+++
T Consensus 19 ~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~--~~~~~~~~~~~ 95 (317)
T KOG1471|consen 19 TESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFED--FEEDDELLKYY 95 (317)
T ss_pred cHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhc--cccchhhhhhc
Confidence 567777788887 888899999766666899999999999999999999999999999999999876 23334456689
Q ss_pred CCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCCcccc
Q 011229 139 PHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSF 218 (490)
Q Consensus 139 p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~sl~~~ 218 (490)
|++++|+|++|+||++.+.|..++..++..+...++.++++..+|+.+...++.|.....+++.|+++|+|++|+++.|+
T Consensus 96 ~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~ 175 (317)
T KOG1471|consen 96 PQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHL 175 (317)
T ss_pred cccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999888777789999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCCCCCccCCC
Q 011229 219 NKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGG 298 (490)
Q Consensus 219 ~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~eyGG 298 (490)
.+..+.++++++.++|+|||++++++||||+|++|+++|++|||||+++|++||++++.++.+.|+++|+++.||.+|||
T Consensus 176 ~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~yGG 255 (317)
T KOG1471|consen 176 LKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEYGG 255 (317)
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCccccCC
Confidence 99999999999999999999999999999999999999999999999999999997766778999999999999999999
Q ss_pred CCcCCC---CCCCcCCCCCCCCChHHHhhhhcCCccc
Q 011229 299 SCTCAD---QGGCMRSDKGPWKDPDILKMVQNGDHKC 332 (490)
Q Consensus 299 t~~~~~---~~gc~~~~~gpw~dp~~~~~~~~g~~~~ 332 (490)
+|.+.+ .++|..++.++|.++.+.+....+....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (317)
T KOG1471|consen 256 TCGDLDDPNGGGCDLSDEGPWKEPEIKKGKQEIEEFG 292 (317)
T ss_pred CccccccccCCcCcccccccccccccccccccccccc
Confidence 999974 4669999999999998877666555444
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=6.3e-38 Score=313.64 Aligned_cols=198 Identities=29% Similarity=0.511 Sum_probs=170.6
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccchhhHhHHHHHhhcCCCCccCCCCCCcEEEEEcCcCCchh
Q 011229 85 DYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQVLECYPHGHHGVDKEGQPVYIERLGLVDATK 164 (490)
Q Consensus 85 D~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~ 164 (490)
.+.+++||||||+||+++|.+|+.++|.||+++++...+...++..-.+.++.| .+|+|++||||+|+++....++.
T Consensus 48 ~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~y---i~G~D~~gRPVl~~~~~~~~qn~ 124 (324)
T KOG1470|consen 48 SDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAY---ILGHDKDGRPVLYLRPRPHRQNT 124 (324)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEE---EecccCCCCeEEEEecCCCCCCC
Confidence 347999999999999999999999999999999987732222222212344555 66799999999999877666654
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCCcccccHHHHHHHHHHHHHhcccCccccceE
Q 011229 165 LMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRM 244 (490)
Q Consensus 165 l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~sl~~~~~~~~~llk~i~~ilq~~YPerL~~i 244 (490)
.+.+++.++.|++||.++.. .+..++++++|+|++|+|++|.+ .++.+.+++++|+||||||+..
T Consensus 125 ----~t~~~~~r~~Vy~mE~Ai~~--------lp~~qe~~~~L~D~~~fs~sN~d---~~~~k~~~~~lq~hYPErLg~a 189 (324)
T KOG1470|consen 125 ----KTQKELERLLVYTLENAILF--------LPPGQEQFVWLFDLTGFSMSNPD---IKFLKELLHILQDHYPERLGKA 189 (324)
T ss_pred ----CCHHHHHHHHHHHHHHHHHh--------CCCCcceEEEEEecccCcccCCC---cHHHHHHHHHHHHhChHHhhhh
Confidence 58899999999999999865 34668889999999999999888 7899999999999999999999
Q ss_pred EEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCCCCCccCCCCCcC
Q 011229 245 FIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGSCTC 302 (490)
Q Consensus 245 ~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~eyGGt~~~ 302 (490)
+|+|+||+|..+|+++||||||+|++||.|..+. ..|.+|||+++||..|||+...
T Consensus 190 ~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~--~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 190 LLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK--DDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred hhcCChHHHHHHHHHhhhccChhhhceeEEecCh--hHHHhhCCccccchhhCCCccc
Confidence 9999999999999999999999999999999873 5599999999999999997554
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.97 E-value=1.2e-30 Score=238.16 Aligned_cols=156 Identities=35% Similarity=0.569 Sum_probs=129.4
Q ss_pred HHhhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCC
Q 011229 134 VLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGV 213 (490)
Q Consensus 134 v~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~ 213 (490)
..+.++++++|+|++||||+++++|++|+.. .+.+++++++++.+|.+++...+ ..++.|+++|+|++|+
T Consensus 3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~----~~~~~~~~~~~~~~E~~~~~~~~------~~~~~~~~~iiD~~g~ 72 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKK----FSPEDVIRFFVYLLERMLKRMPE------GGQVEGIVVIIDLSGF 72 (159)
T ss_dssp HHTTSCEEEEEE-TTS-EEEEEEGTT--HHT----S-HHHHHHHHHHHHHHHHHTHHH------TSHHH-EEEEEE-TT-
T ss_pred HHCCeeEEECCCCCCcCEEEEEEcccCCCCc----CCHHHHHHHHHHHHHHHHhhhcc------cccceeEEEEEeCCCc
Confidence 4677888899999999999999999999985 46889999999999999864221 3678999999999999
Q ss_pred CcccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCC-cchHHHHcccCCCCC
Q 011229 214 GLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGN-KYQSKLLEIIDASEL 292 (490)
Q Consensus 214 sl~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~-~~~~~L~e~Id~~~L 292 (490)
++++++....++++.+.++++++||++++++||+|+|++|+.+|+++++||+++|++||+++++ ++.+.|.++||+++|
T Consensus 73 ~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 73 SLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp -HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred eEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 9999875558999999999999999999999999999999999999999999999999999964 455799999999999
Q ss_pred CccCCCC
Q 011229 293 PEFLGGS 299 (490)
Q Consensus 293 P~eyGGt 299 (490)
|.+|||+
T Consensus 153 P~~~GG~ 159 (159)
T PF00650_consen 153 PVEYGGT 159 (159)
T ss_dssp BGGGTSS
T ss_pred chhcCCC
Confidence 9999997
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.96 E-value=2.3e-28 Score=222.83 Aligned_cols=154 Identities=38% Similarity=0.610 Sum_probs=139.5
Q ss_pred HHhhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCC
Q 011229 134 VLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGV 213 (490)
Q Consensus 134 v~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~ 213 (490)
...++++|+ |.|++||||+++++++++++. .+.+++++++++.+|.++.. .....++.|+++|+|++|+
T Consensus 5 ~~~~~~~~~-g~D~~GrpV~~~~~~~~~~~~----~~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~~~i~D~~~~ 73 (158)
T smart00516 5 GKAYIPGGR-GYDKDGRPVLIFRAGRFDLKS----VTLEELLRYLVYVLEKILQR------EKKTGGIEGFTVIFDLKGL 73 (158)
T ss_pred HHHhcCCCC-CCCCCcCEEEEEeccccccCc----CCHHHHHHHHHHHHHHHHHH------HhcCCCeeeEEEEEECCCC
Confidence 456777777 999999999999999998765 58999999999999998754 1134678999999999999
Q ss_pred CcccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCCCCC
Q 011229 214 GLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELP 293 (490)
Q Consensus 214 sl~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP 293 (490)
++++++ .++++.+.++++++||++++++||+|+|++|+.+|+++++|+++++++||+++++++.+.|.++||+++||
T Consensus 74 ~~~~~~---~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~lP 150 (158)
T smart00516 74 SMSNPD---LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQLP 150 (158)
T ss_pred Cccccc---HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhhCc
Confidence 999865 78999999999999999999999999999999999999999999999999999987678999999999999
Q ss_pred ccCCCCCc
Q 011229 294 EFLGGSCT 301 (490)
Q Consensus 294 ~eyGGt~~ 301 (490)
.+|||+|.
T Consensus 151 ~~~GG~~~ 158 (158)
T smart00516 151 EELGGTLD 158 (158)
T ss_pred HhhCCCCC
Confidence 99999973
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.93 E-value=3.4e-25 Score=199.29 Aligned_cols=144 Identities=38% Similarity=0.616 Sum_probs=128.4
Q ss_pred ccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCCcccccHHH
Q 011229 143 HGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAA 222 (490)
Q Consensus 143 ~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~sl~~~~~~~ 222 (490)
.|.|++||||+++++++.++... .+.+++++++++.+|..+.... ....|+++|+|++|++++++. ..
T Consensus 14 ~~~D~~gr~V~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~--------~~~~~~~~i~D~~~~~~~~~~-~~ 81 (157)
T cd00170 14 GGRDKEGRPVLIIRAGNKDLSKS---LDSEELLRYLVYTLEKLLQEDD--------EQVEGFVVIIDLKGLSLSHLL-PD 81 (157)
T ss_pred CCCCCCcCEEEEEecCCcchhhc---CCHHHHHHHHHHHHHHHHhhhh--------hcccceEEEEECCCCChhccc-hh
Confidence 34799999999999997666543 3448899999999999876522 233799999999999999986 66
Q ss_pred HHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCCCCCccCCCC
Q 011229 223 RELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGS 299 (490)
Q Consensus 223 ~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~eyGGt 299 (490)
.+.++.+.++++++||++++++||+|+|++|+.+|+++++|+++++++||++++++ .+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 82 PSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-HHHHHhhCChhhCcHhhCCC
Confidence 88999999999999999999999999999999999999999999999999999876 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.42 E-value=7.5e-14 Score=126.99 Aligned_cols=138 Identities=22% Similarity=0.361 Sum_probs=93.7
Q ss_pred ccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCCcccccHHH
Q 011229 143 HGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAA 222 (490)
Q Consensus 143 ~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~sl~~~~~~~ 222 (490)
.|+|++||||+++...+. ++. .+.+.++.|.+..+.... ...+.++|+|+.|++..+.+ .
T Consensus 7 gG~d~~g~pV~~~~~~~~-~~~----~~~~~ll~yl~~~l~~~~-------------~~~~f~vVid~~~~~~~~~~--~ 66 (149)
T PF13716_consen 7 GGRDREGRPVVVFIASRL-PSS----DDLERLLLYLLSTLSEEV-------------VDKPFSVVIDHTGFSRSSEP--S 66 (149)
T ss_dssp EEEBTTS-EEEEEEGGG--C-T----THHHHHHHHHHHHH-TTT-------------TTS-EEEEEE-TT--GGG-----
T ss_pred cccCCCcCEEEEEECCcC-cch----hhHHHHHHHHHHhhhHHh-------------cCCCEEEEEEcCCCccccCC--c
Confidence 479999999999997776 332 255666666665552111 13459999999999875543 3
Q ss_pred HHHHHHHHHHhcccCccccceEEEEecChhhHHHH-HHHhhcCChhh-hcceEEcCCcchHHHHcccCCCCCCccCCCCC
Q 011229 223 RELITQIQKIDGDNYPETLNRMFIINAGSGFRMLW-NTIKSFLDPKT-TAKIHVLGNKYQSKLLEIIDASELPEFLGGSC 300 (490)
Q Consensus 223 ~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw-~iVKpfL~~kt-~~KI~~lg~~~~~~L~e~Id~~~LP~eyGGt~ 300 (490)
...++.+.+.+...||..++++||||++++++.++ .+.+++.+++. ..||.++.+ .++|.++||+++||..+||+.
T Consensus 67 ~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s--l~~L~~~i~~~qL~~~lp~~~ 144 (149)
T PF13716_consen 67 LSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS--LSELSKHIDPSQLPESLPGVL 144 (149)
T ss_dssp HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS--TCGGGGTSGGGG------HHH
T ss_pred hHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC--HHHHHhhCCHHHhcccCCCEE
Confidence 67888999999999999999999999999999999 55577778988 899999876 689999999999999999987
Q ss_pred cC
Q 011229 301 TC 302 (490)
Q Consensus 301 ~~ 302 (490)
..
T Consensus 145 ~~ 146 (149)
T PF13716_consen 145 QY 146 (149)
T ss_dssp --
T ss_pred ec
Confidence 65
No 7
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.70 E-value=2.4e-08 Score=75.98 Aligned_cols=47 Identities=38% Similarity=0.569 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhc--------CCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011229 63 IKAVDALRQALILE--------ELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDM 110 (490)
Q Consensus 63 ~~al~~fRq~L~~~--------~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~ 110 (490)
++++++||+.|... +..+..++| .+|+||||||+||+++|.+||.+|
T Consensus 1 k~~l~~l~~~l~~~~~~~~~~~~~~~~~~~d-~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEKAPGLWDDEKEDHDD-NFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GGGTHHHTTHTSS-SH-HHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccchhcccccccCCCCH-HHHHHHHHHccCCHHHHHHHHHhC
Confidence 46899999999873 334555666 899999999999999999999875
No 8
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.97 E-value=2.8e-05 Score=80.54 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=96.0
Q ss_pred CCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCCcccccHHHHH
Q 011229 145 VDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAARE 224 (490)
Q Consensus 145 ~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~sl~~~~~~~~~ 224 (490)
.|++||+|+++-..++.+..= ..--++++|.++.++..++.. .|.+.=-.|+...+.+ .+.
T Consensus 89 ~D~~gr~iivv~a~rlp~~~e---ld~~~li~~~v~~id~~Ve~D--------------Yt~vYfh~gl~s~nkp--~l~ 149 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSE---LDDIRLISYLVYTIDKYVEND--------------YTLVYFHHGLPSDNKP--YLQ 149 (467)
T ss_pred ccccCCeeEEEEEecCCchhh---hhhHHHHHHHHHHHHHHHhcc--------------ceeeehhcCCcccccc--hHH
Confidence 699999999998888776541 122238999999999988642 4455555666655544 355
Q ss_pred HHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCC
Q 011229 225 LITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDAS 290 (490)
Q Consensus 225 llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~ 290 (490)
++....+-+-.+|--.++.+|+|.+-|+.+.+|+++|||++.|...||+-+.. .++|.++|.-+
T Consensus 150 ~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~--lseL~~~l~l~ 213 (467)
T KOG4406|consen 150 LLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS--LSELFEALKLN 213 (467)
T ss_pred HHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh--HHHHHHhhhhh
Confidence 55555555556788899999999999999999999999999999999998854 68888877543
No 9
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=92.03 E-value=0.21 Score=39.45 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=24.3
Q ss_pred CCCCC--CchhhHHHHHHHHHHHHHHHHHhc
Q 011229 401 KSTPG--IYGAEYIAVMKRMAELEDAVTILS 429 (490)
Q Consensus 401 ~~~~~--~~~~~~~~~~~Rl~~LE~k~~~l~ 429 (490)
++.|. +++|+|..+.+||.|+|+||+..+
T Consensus 5 ek~P~v~v~~~dfne~~kRLdeieekvef~~ 35 (75)
T COG4064 5 EKVPKVVVDPDDFNEIHKRLDEIEEKVEFVN 35 (75)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHhhH
Confidence 34563 899999999999999999998654
No 10
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=90.14 E-value=0.39 Score=38.03 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhc
Q 011229 406 IYGAEYIAVMKRMAELEDAVTILS 429 (490)
Q Consensus 406 ~~~~~~~~~~~Rl~~LE~k~~~l~ 429 (490)
+++++|..+++||.++|+||+.-+
T Consensus 9 v~~~d~~~i~~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 9 VEPDEFNEVMKRLDEIEEKVEFVN 32 (70)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998654
No 11
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=87.63 E-value=0.75 Score=37.27 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhc
Q 011229 406 IYGAEYIAVMKRMAELEDAVTILS 429 (490)
Q Consensus 406 ~~~~~~~~~~~Rl~~LE~k~~~l~ 429 (490)
+++++|..+++||.++||||+.-+
T Consensus 12 v~~~d~~~i~~rLD~iEeKVEftn 35 (77)
T PRK01026 12 VDPKDFKEIQKRLDEIEEKVEFTN 35 (77)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998644
No 12
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=85.18 E-value=1.1 Score=35.54 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhc
Q 011229 406 IYGAEYIAVMKRMAELEDAVTILS 429 (490)
Q Consensus 406 ~~~~~~~~~~~Rl~~LE~k~~~l~ 429 (490)
+++++|..+++||.++|+||+.-+
T Consensus 9 v~~~~~~~i~~rLd~iEeKvEf~~ 32 (70)
T PF04210_consen 9 VDPDDFNEIMKRLDEIEEKVEFTN 32 (70)
T ss_pred eCHHHHHHHHHHHHHHHHHHHhHH
Confidence 789999999999999999998643
No 13
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=66.93 E-value=20 Score=25.53 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011229 64 KAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWS 108 (490)
Q Consensus 64 ~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~ 108 (490)
+.|.+|..... . +...-..||.+++||++.|+..+-
T Consensus 2 e~i~~F~~iTg--------~-~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 2 EKIAQFMSITG--------A-DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp HHHHHHHHHH---------S-SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHC--------c-CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788877652 1 235788999999999999998763
No 14
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.77 E-value=75 Score=31.09 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHH-----HHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDA-----VTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKK 481 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k-----~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~ 481 (490)
.++..+.||..|++- -+....++.+=|-.+|+=........+-||.||+++++.|+.+=.+=.+|.-+.|.+
T Consensus 115 R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 115 RLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467778888888871 222223333333445666667777889999999999999987655555555555543
No 15
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=51.62 E-value=43 Score=23.57 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 64 KAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 64 ~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
+.|+.+++. .|.. +. ..+..-|.++++|++.|..++-+
T Consensus 3 ~~v~~L~~m------FP~~-~~-~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 3 EMVQQLQEM------FPDL-DR-EVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHH------SSSS--H-HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHH------CCCC-CH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 345566554 4543 33 57999999999999999998754
No 16
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.13 E-value=1.2e+02 Score=31.05 Aligned_cols=66 Identities=30% Similarity=0.403 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKKK 484 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~~ 484 (490)
.+.+.=+.+.+||.+..+. ..|+++|.=| |.+|.-|+.+|+..+|++....--| ||.+-|+..+.+
T Consensus 108 ~~~~ler~i~~Le~~~~T~-----~L~~e~E~~l---vq~I~~L~k~le~~~k~~e~~~~~~-el~aei~~lk~~ 173 (294)
T COG1340 108 SIKSLEREIERLEKKQQTS-----VLTPEEEREL---VQKIKELRKELEDAKKALEENEKLK-ELKAEIDELKKK 173 (294)
T ss_pred CHHHHHHHHHHHHHHHHhc-----CCChHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4556668889999998874 4788888765 6777789999999999999988775 566666666544
No 17
>PHA01750 hypothetical protein
Probab=47.63 E-value=89 Score=24.74 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=32.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011229 441 EMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKKK 484 (490)
Q Consensus 441 e~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~~ 484 (490)
++|.+|+.-| +-+||.--++-+.++=.||.+|-+-++..|++
T Consensus 30 q~lkdAvkeI--V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 30 QALKDAVKEI--VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5677777644 55777777888888889999999888877765
No 18
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.59 E-value=82 Score=35.72 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011229 409 AEYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDS 467 (490)
Q Consensus 409 ~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~ 467 (490)
..+..+.+++.+||+..+.|+.|=...|.+ +-+..-..+.+.++.++.+.+..+...
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~ 447 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEEL 447 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999988877764 233444445555555555544444443
No 19
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=47.51 E-value=76 Score=30.08 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcc-----------CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 407 YGAEYIAVMKRMAELEDAVTILSA-----------KPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELL 475 (490)
Q Consensus 407 ~~~~~~~~~~Rl~~LE~k~~~l~~-----------kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~ 475 (490)
|.+++..+-.|+-.||+||+.|.. .--.=|.+|+++ +.-=.||.+||.-+.+-=.+|+--=--|.||-
T Consensus 70 Sr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v-~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~ 148 (189)
T TIGR02132 70 TKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDV-TKLKQDIKSLDKKLDKILELLEGQQKTQDELK 148 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHH-HHHHHHHHHHHHHHHHHHHHHhcCccchhHHH
Confidence 566777777777777776655432 222456677663 55566788888777666666653333344444
Q ss_pred HHHHHH
Q 011229 476 AFIDKK 481 (490)
Q Consensus 476 ~~ie~~ 481 (490)
+.|.++
T Consensus 149 ~~~~~~ 154 (189)
T TIGR02132 149 ETIQKQ 154 (189)
T ss_pred HHHHHH
Confidence 444433
No 20
>PHA02629 A-type inclusion body protein; Provisional
Probab=44.66 E-value=69 Score=24.03 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCC----chHHHHHHHHHHhhHHHHHHHHHH---HHHHHHH
Q 011229 414 VMKRMAELEDAVTILSAKPAAM----LAEKEEMLNAAVSRVDALEQELMS---TRRALED 466 (490)
Q Consensus 414 ~~~Rl~~LE~k~~~l~~kp~~m----p~eKEe~L~~a~~Rv~~lE~eL~~---TKkaL~~ 466 (490)
++..+++||.|...-.+--+.= .+|=|. .||..||+||-+ |-|||+.
T Consensus 1 ml~kiadle~klrd~gng~~gngc~s~c~fer------k~iavleaelr~~metik~lek 54 (61)
T PHA02629 1 MLRKIADLEKKLRDGGNGNGGNGCTSSCEFER------KIIAVLEAELRKSMETIKALEK 54 (61)
T ss_pred CchhHHHHHHHHHccCCCCCCCCccchhHhhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999987765544322 344443 478888998854 5566653
No 21
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=44.60 E-value=56 Score=23.05 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 64 KAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 64 ~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
+.++++++. .|.- +. ..+.+.|+++++|++.|...+.+
T Consensus 4 ~~v~~L~~m------FP~l-~~-~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDM------FPNL-DE-EVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHH------CCCC-CH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 355566554 4543 33 57889999999999999988753
No 22
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=42.40 E-value=1.2e+02 Score=27.64 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCC---chHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAM---LAEKEEMLN---AAVSRVDALEQELMSTRRALEDSLARQEELLA 476 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~m---p~eKEe~L~---~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~ 476 (490)
..++.++=+|++.||..|+.+..+=.+. ..+.+.... +.-+||..||.||..+-+.|.+|.-|=.+.-.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468888888888888888777653322 223333322 35679999999999999999999877665533
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.26 E-value=74 Score=24.36 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhccC
Q 011229 417 RMAELEDAVTILSAK 431 (490)
Q Consensus 417 Rl~~LE~k~~~l~~k 431 (490)
|+.|||.++..|.+.
T Consensus 1 Ri~elEn~~~~~~~~ 15 (55)
T PF05377_consen 1 RIDELENELPRIESS 15 (55)
T ss_pred CHHHHHHHHHHHHHH
Confidence 455555555555443
No 24
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=40.75 E-value=1.7e+02 Score=27.83 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=54.8
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 011229 421 LEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALED---SLARQEELLAFIDKKKKK 484 (490)
Q Consensus 421 LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~---~l~kQ~el~~~ie~~k~~ 484 (490)
+=|-|++..+||.--+.++..++++...--+-+|.-|.++++.|.+ .+.+=.||+.++.+++.+
T Consensus 20 fiedV~s~~~qp~~~~~~~l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~ 86 (187)
T KOG3313|consen 20 FIEDVESYISQPELESLEALKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDE 86 (187)
T ss_pred HHHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCccc
Confidence 3356788999999999999999999999999999999999999986 456777888888776543
No 25
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=40.74 E-value=1.2e+02 Score=29.23 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAML----AEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKK 483 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp----~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~ 483 (490)
+..+....+.|.+||++...|-.+=-+.. .+=......|+.-|+.=|..|.+-|+||.++=-....+-.||++.+.
T Consensus 31 Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d 110 (204)
T PF10368_consen 31 EKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIED 110 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44688899999999999999988753222 45567888999999999999999999999998888888888887663
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.27 E-value=1.2e+02 Score=29.51 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC-------chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011229 413 AVMKRMAELEDAVTILSAKPAAM-------LAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKKKK 485 (490)
Q Consensus 413 ~~~~Rl~~LE~k~~~l~~kp~~m-------p~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~~k 485 (490)
++-.||.+||..+..|..+..++ -.|..+-+.++=.-+..|+.|...-++-|..+-.+=++|-+-++.+++..
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665554443 22333444455555555666666666666665555555566666666543
No 27
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=38.10 E-value=1.1e+02 Score=37.11 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHH---HHHHHhhHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEM---LNAAVSRVDALEQELMSTRRALE 465 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~---L~~a~~Rv~~lE~eL~~TKkaL~ 465 (490)
....-++.++.|++++..++ |+|++ |+.++.+.+..|++|..+.+||.
T Consensus 442 ~l~~~~~~~~~~~~~~~~~~--------~~~~~~keL~e~i~~lk~~~~el~~~q~~l~ 492 (1317)
T KOG0612|consen 442 SLVNEMQEKEKLDEKCQAVA--------ELEEMDKELEETIEKLKSEESELQREQKALL 492 (1317)
T ss_pred chhhHHHHhhhHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667899999999999998 77777 89999999999999999777763
No 28
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.75 E-value=2.2e+02 Score=32.80 Aligned_cols=75 Identities=23% Similarity=0.219 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCchHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 407 YGAEYIAVMKRMAELEDAVTILSAKPAAMLAEKEEM----LNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKK 481 (490)
Q Consensus 407 ~~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~----L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~ 481 (490)
+.++..+-|+|.-.+|+.=.+=+..=+.--.|.+++ +++|+.++..|++||+.+||-|.++.---+-|-..+|++
T Consensus 171 ~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 171 QLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445566667777666655333222212111243332 579999999999999999999988765545555444443
No 29
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=37.19 E-value=33 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011229 458 MSTRRALEDSLARQEELLAFIDKKKK 483 (490)
Q Consensus 458 ~~TKkaL~~~l~kQ~el~~~ie~~k~ 483 (490)
+.+|++|+ +-|+||.+|...++.
T Consensus 13 QsAkqmln---ILQEELssy~~E~~~ 35 (44)
T PF13080_consen 13 QSAKQMLN---ILQEELSSYPQEQPQ 35 (44)
T ss_pred HHHHHHHH---HHHHHHHhchhhccC
Confidence 46788887 579999999977663
No 30
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=37.00 E-value=1.8e+02 Score=30.11 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAML-AEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKK 482 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp-~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k 482 (490)
.+-.+..|.+.|++++..|...+.++= +++ +-|+++=.++.+++.++.+-|+-|.+.=.+=.++-+-|+..+
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~-~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~ 250 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLVEEIESCDQ-EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELE 250 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888888777654 333 345555566666666666555555544443344444444443
No 31
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=36.18 E-value=2.6e+02 Score=27.83 Aligned_cols=57 Identities=25% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011229 412 IAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLAR 470 (490)
Q Consensus 412 ~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~k 470 (490)
..-=..++-+|+.+..-+. ..+=+..-||||.|..||..-|++-......-......
T Consensus 94 ~aAKe~v~laEq~l~~~~~--~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~ 150 (239)
T PF05276_consen 94 AAAKEMVALAEQSLMSDSN--WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARI 150 (239)
T ss_pred HHHHHHHHHHHHHHhcCCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567788888776444 56889999999999999999888887777665544333
No 32
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=35.44 E-value=2.4e+02 Score=30.28 Aligned_cols=91 Identities=20% Similarity=0.321 Sum_probs=64.2
Q ss_pred CCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCCcccccH-----
Q 011229 146 DKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNK----- 220 (490)
Q Consensus 146 Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~sl~~~~~----- 220 (490)
|....|++++.+|... .+.+.|+++.+....+ . .--++|++-.|++-..+..
T Consensus 121 ~~~~~P~vvilpGltg-------~S~~~YVr~lv~~a~~---~-------------G~r~VVfN~RG~~g~~LtTpr~f~ 177 (409)
T KOG1838|consen 121 DDGTDPIVVILPGLTG-------GSHESYVRHLVHEAQR---K-------------GYRVVVFNHRGLGGSKLTTPRLFT 177 (409)
T ss_pred CCCCCcEEEEecCCCC-------CChhHHHHHHHHHHHh---C-------------CcEEEEECCCCCCCCccCCCceee
Confidence 3456799999999743 3567888888765332 1 1347889999976555431
Q ss_pred -HHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHh
Q 011229 221 -AARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIK 261 (490)
Q Consensus 221 -~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVK 261 (490)
-..+-++.+++.+...||.+ .++.+--+.+-.++||-+-
T Consensus 178 ag~t~Dl~~~v~~i~~~~P~a--~l~avG~S~Gg~iL~nYLG 217 (409)
T KOG1838|consen 178 AGWTEDLREVVNHIKKRYPQA--PLFAVGFSMGGNILTNYLG 217 (409)
T ss_pred cCCHHHHHHHHHHHHHhCCCC--ceEEEEecchHHHHHHHhh
Confidence 12456778888888999998 7888888888888777553
No 33
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.29 E-value=2.3e+02 Score=31.35 Aligned_cols=34 Identities=38% Similarity=0.554 Sum_probs=27.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Q 011229 441 EMLNAAVSRVDALEQELMSTRR--------------ALEDSLARQEEL 474 (490)
Q Consensus 441 e~L~~a~~Rv~~lE~eL~~TKk--------------aL~~~l~kQ~el 474 (490)
+=|+.+-.+|..||.||..|++ .|.+.|++|.|=
T Consensus 462 eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 462 EELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4488899999999999999998 455666666653
No 34
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=34.10 E-value=2.4e+02 Score=28.12 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHhc---------cCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILS---------AKP-AAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFID 479 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~---------~kp-~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie 479 (490)
....++++....|.+|..|. +|| .+|=..=+++|++.-.||..||+++..+|.-=.+||-.-++|.+-|=
T Consensus 143 eH~~~~~~~~~ae~~v~~Lek~lkr~I~KSrPYfe~K~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeIH 222 (239)
T PF05276_consen 143 EHQRRARIYNEAEQRVQQLEKKLKRAIKKSRPYFELKAKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEIH 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666655 333 23445568899999999999999999999999999999999999886
Q ss_pred HHhhh
Q 011229 480 KKKKK 484 (490)
Q Consensus 480 ~~k~~ 484 (490)
.+...
T Consensus 223 ~~R~~ 227 (239)
T PF05276_consen 223 EQRRR 227 (239)
T ss_pred HHHhh
Confidence 65543
No 35
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=33.81 E-value=1.5e+02 Score=34.44 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=42.8
Q ss_pred HHHHHHHHHhccCCCCCchH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Q 011229 419 AELEDAVTILSAKPAAMLAE---KEEMLNAAVSRVDALEQELMSTRRALEDSLARQ-EELLAFIDKKK 482 (490)
Q Consensus 419 ~~LE~k~~~l~~kp~~mp~e---KEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ-~el~~~ie~~k 482 (490)
.++++-+..++-.+-.+|.. -++.+++--.|++.+++++..|++.|.+.+.+- ++|.++-+..+
T Consensus 204 ~kv~~il~~~~f~~~~~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~ 271 (759)
T PF01496_consen 204 EKVKKILRSFGFERYDLPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLR 271 (759)
T ss_dssp HHHHHHHHTTT--B----GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCceecCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777753 468999999999999999999999999876653 34555444443
No 36
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=33.69 E-value=41 Score=31.76 Aligned_cols=67 Identities=27% Similarity=0.334 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCC-----chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAM-----LAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKK 482 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~m-----p~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k 482 (490)
..+...+.+||++||+..+.+..|=..- =.|=|||+ .|+.+||+-+.. ++...+++..-..|-...|
T Consensus 91 e~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~----~~l~~le~~~~~----~e~~~~~~~~~~~~~~~~~ 162 (175)
T PRK13182 91 EAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEML----ERLQKLEARLKK----LEPIYITPDTEPTYEREKK 162 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHH----HHHHHHHHHHHH----HHhhccCCccccccccccC
Confidence 3467788899999999999888875432 23556664 688988887765 6666667666655544433
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.58 E-value=1.4e+02 Score=32.83 Aligned_cols=74 Identities=12% Similarity=0.237 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKK 482 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k 482 (490)
.+.++.....+.+|+++...|..+=.+.=...++ ++..-.|+..++.++...+..|++...+..+|-+=|++.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~-~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDE-FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888876655455554 7778999999999999999998887777666666666654
No 38
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=33.56 E-value=1.7e+02 Score=29.14 Aligned_cols=70 Identities=21% Similarity=0.194 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchHH-----HHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 011229 411 YIAVMKRMAELEDAVTILSAKPAAMLAEK-----EEMLNAAVSRVDALEQELMSTR-------RALEDSLARQEELLAFI 478 (490)
Q Consensus 411 ~~~~~~Rl~~LE~k~~~l~~kp~~mp~eK-----Ee~L~~a~~Rv~~lE~eL~~TK-------kaL~~~l~kQ~el~~~i 478 (490)
-..|++.|+||... ....|+.+-|.| ..=+.+.+.|+.+||..|..-. ..+++...+..+|.+-|
T Consensus 182 r~~~~~~l~el~~r---~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i 258 (268)
T PF13234_consen 182 RKQVLKSLQELLKR---FPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEI 258 (268)
T ss_dssp HHHHHHHHHHHHHH---SSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34555555555555 233344444433 3334555666666666665443 45555566666666666
Q ss_pred HHHhh
Q 011229 479 DKKKK 483 (490)
Q Consensus 479 e~~k~ 483 (490)
+..|+
T Consensus 259 ~~Lk~ 263 (268)
T PF13234_consen 259 KALKR 263 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 39
>PHA00687 hypothetical protein
Probab=33.13 E-value=1e+02 Score=22.59 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=22.7
Q ss_pred CCCchHHHHHHHHH----------HhhHHHHHHHHHHHHH
Q 011229 433 AAMLAEKEEMLNAA----------VSRVDALEQELMSTRR 462 (490)
Q Consensus 433 ~~mp~eKEe~L~~a----------~~Rv~~lE~eL~~TKk 462 (490)
...|+|--.+|+.| +.||+++|.--+..|+
T Consensus 9 ttlppeamrllqqaaqtpitradplarvkaiekatervkr 48 (56)
T PHA00687 9 TTLPPEAMRLLQQAAQTPITRADPLARVKAIEKATERVKR 48 (56)
T ss_pred ccCCHHHHHHHHHHhcCCccccChHHHHHHHHHHHHHHHH
Confidence 35899999999876 5789988876655554
No 40
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=33.01 E-value=2.2e+02 Score=30.66 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSA--KPAAMLAEKEEMLNAAVSRVDALEQELMSTRRAL 464 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~--kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL 464 (490)
++..+-++|.+|+..+..|.. ++..+|+++.++++........|.++|.+.+.-|
T Consensus 342 ~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 398 (451)
T PF03961_consen 342 ELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEEL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777766665 4667899999988888877777777766555444
No 41
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.99 E-value=1.8e+02 Score=27.56 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 011229 459 STRRALEDSLARQ 471 (490)
Q Consensus 459 ~TKkaL~~~l~kQ 471 (490)
+|.--|.+|.-||
T Consensus 142 ~~~~~~~~~~~~~ 154 (189)
T TIGR02132 142 KTQDELKETIQKQ 154 (189)
T ss_pred cchhHHHHHHHHH
Confidence 4555555555543
No 42
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=32.95 E-value=1.4e+02 Score=28.07 Aligned_cols=63 Identities=19% Similarity=0.394 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEML----NAAVSRVDALEQELMSTRRALEDSLARQEE 473 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L----~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~e 473 (490)
.+.++++++..+|+++..+..+...--..+++.+ ...-.-|+.|+.||.++++-+ ++|-+|-|
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~-~~LkkQ~~ 185 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI-EALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4678889999999999998887665544444332 222334555555555533332 35555543
No 43
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.21 E-value=2.3e+02 Score=24.36 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCchHHH
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAMLAEKE 440 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKE 440 (490)
.+++..+-+|+++.+..++.|..+=..||-.++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~d 66 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDD 66 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 345555544444444444444444444554443
No 44
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=31.91 E-value=1.1e+02 Score=25.20 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011229 451 DALEQELMSTRRALEDSLARQEELLAFIDKKKK 483 (490)
Q Consensus 451 ~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~ 483 (490)
..++-.|...+..|.++...|.+|.+.|++...
T Consensus 10 ~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~ 42 (92)
T PF14712_consen 10 SLLEPDLDRLDQQLQELRQSQEELLQQIDRLNE 42 (92)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777888888888888888877653
No 45
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=31.78 E-value=2.9e+02 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 011229 407 YGAEYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAA 446 (490)
Q Consensus 407 ~~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a 446 (490)
+...++-.|-|+..|+..++..+.+-+++.+.++++|-+.
T Consensus 50 s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~~l 89 (268)
T PF11802_consen 50 SDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLLTL 89 (268)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHHHH
Confidence 4456788899999999999999999999999888877643
No 46
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=31.70 E-value=1.7e+02 Score=29.42 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 011229 467 SLARQEELLAFIDKKKKKK 485 (490)
Q Consensus 467 ~l~kQ~el~~~ie~~k~~k 485 (490)
+=.-|+-+.+++||+++||
T Consensus 250 s~d~~egi~aflek~~~~~ 268 (278)
T PLN03214 250 EPSIIKALGGVMERLSSGK 268 (278)
T ss_pred CHHHHHHHHHHHHHHhhcc
Confidence 3355888999999999887
No 47
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.12 E-value=4.5e+02 Score=28.79 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=52.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH--HHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 406 IYGAEYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLN--AAV-----SRVDALEQELMSTRRALEDSLARQEELLAFI 478 (490)
Q Consensus 406 ~~~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~--~a~-----~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~i 478 (490)
+..|-+..++-++.+|+++++.|...-...=.|.|+|-+ .++ .+|++-..||......|.+...+...++.-+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999877777777777744 111 2344556677777777776666555555544
No 48
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=29.42 E-value=92 Score=29.82 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHH
Q 011229 437 AEKEEMLNAAVSRVDALEQE-------LMSTRRALEDS 467 (490)
Q Consensus 437 ~eKEe~L~~a~~Rv~~lE~e-------L~~TKkaL~~~ 467 (490)
.||-+||.+|=.||+.|... |++||++-+-+
T Consensus 140 ~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~kA 177 (188)
T PF05335_consen 140 AEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYKA 177 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999865 55666665544
No 49
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=28.13 E-value=2.5e+02 Score=25.25 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLAR 470 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~k 470 (490)
+=...-+|+.+.|..+..+...-. -=..+=.-..+.+.+|+.|-..|.++...|++++.-
T Consensus 50 ~Q~~L~~riKevd~~~~~l~~~~~-erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 50 DQNALAKRIKEVDQEIAKLLQQMV-ERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677899999988888876533 113344456778999999999999999999988654
No 50
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.91 E-value=6.4e+02 Score=24.77 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFI 478 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~i 478 (490)
...+..+-.+.+++|++...--.+-. |.+-+.++.|+..||..+...+. ++..|.+-++-+
T Consensus 58 e~~~~~~~~~~~k~e~~A~~Al~~g~------E~LAr~al~~~~~le~~~~~~~~----~~~~~~~~~~~l 118 (225)
T COG1842 58 ERKLEEAQARAEKLEEKAELALQAGN------EDLAREALEEKQSLEDLAKALEA----ELQQAEEQVEKL 118 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44678888889999998877666654 99999999999988877665544 444444444433
No 51
>PF14282 FlxA: FlxA-like protein
Probab=25.81 E-value=3.3e+02 Score=23.37 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCch-HHHHHHHHHHhhHHHHHHHHH
Q 011229 407 YGAEYIAVMKRMAELEDAVTILSAKPAAMLA-EKEEMLNAAVSRVDALEQELM 458 (490)
Q Consensus 407 ~~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~-eKEe~L~~a~~Rv~~lE~eL~ 458 (490)
....+..+-+++.+|.+++..|...-. ||+ +|.+....=-.-|..||+.|.
T Consensus 17 ~~~~I~~L~~Qi~~Lq~ql~~l~~~~~-~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 17 SDSQIEQLQKQIKQLQEQLQELSQDSD-LDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999533 444 566555555567778888875
No 52
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=25.44 E-value=2.2e+02 Score=26.80 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 011229 408 GAEYIAVMKRMAELEDAV 425 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~ 425 (490)
...+..+=+|+++||..|
T Consensus 4 ~~~l~~Le~Ri~~LE~~v 21 (174)
T PF07426_consen 4 MSALDILEKRIEELERRV 21 (174)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345777789999999999
No 53
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=1.6e+02 Score=26.08 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.5
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 011229 447 VSRVDALEQELMSTRRALED 466 (490)
Q Consensus 447 ~~Rv~~lE~eL~~TKkaL~~ 466 (490)
+-+.+.||++|.-+++||.|
T Consensus 26 ~~qk~~le~qL~E~~~al~E 45 (119)
T COG1382 26 ILQKQQLEAQLKEIEKALEE 45 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999986
No 54
>KOG2267 consensus Eukaryotic-type DNA primase, large subunit [Replication, recombination and repair]
Probab=24.77 E-value=2.1e+02 Score=30.52 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011229 65 AVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQ 112 (490)
Q Consensus 65 al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~ 112 (490)
...++.+.|..+-+|. +.+-..+--||+..+..++.|.++|+...+
T Consensus 290 Cmk~lhe~LrkNhHLr--y~gR~qygLFLKgiGLS~deal~fwr~sFt 335 (475)
T KOG2267|consen 290 CMKQLHERLRKNHHLR--YGGRQQYGLFLKGIGLSVDEALAFWRGSFT 335 (475)
T ss_pred HHHHHHHHHhhccccc--ccchhhhhhhhhccCcCHHHHHHHHHHHHh
Confidence 4567788888777764 444456677999999999999999887766
No 55
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.26 E-value=5.3e+02 Score=23.25 Aligned_cols=60 Identities=23% Similarity=0.472 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 414 VMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKK 481 (490)
Q Consensus 414 ~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~ 481 (490)
++..-..+|.-++.| |..--.|.+++ .||+.||.|+...-+-|.+++.+=+++++-|+..
T Consensus 78 Ii~kakqIe~LIdsL---Pg~~~see~Q~-----~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSL---PGIEVSEEEQL-----KRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHS---TTSSS-HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666 33222444443 8999999999999999999999999999988765
No 56
>smart00353 HLH helix loop helix domain.
Probab=23.67 E-value=2.1e+02 Score=20.56 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHH
Q 011229 435 MLAEKEEMLNAAVSRVDALEQELM 458 (490)
Q Consensus 435 mp~eKEe~L~~a~~Rv~~lE~eL~ 458 (490)
-...|-.+|..|++=|+.|+.++.
T Consensus 29 ~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 29 KKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 346899999999999999988764
No 57
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=23.41 E-value=46 Score=33.18 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=19.0
Q ss_pred ceEEEEecChhhHHHHHHHhhcCChhh
Q 011229 242 NRMFIINAGSGFRMLWNTIKSFLDPKT 268 (490)
Q Consensus 242 ~~i~IINaP~~f~~lw~iVKpfL~~kt 268 (490)
..|+|||+||.+.--..-+-++|.+..
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L 232 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETL 232 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHS
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 479999999999877777776665543
No 58
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.38 E-value=96 Score=24.07 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHH
Q 011229 413 AVMKRMAELEDA 424 (490)
Q Consensus 413 ~~~~Rl~~LE~k 424 (490)
++=+||+.||..
T Consensus 29 tiEqRLa~LE~r 40 (60)
T PF11471_consen 29 TIEQRLAALEQR 40 (60)
T ss_pred CHHHHHHHHHHH
Confidence 355777777764
No 59
>cd07322 PriL_PriS_Eukaryotic Eukaryotic core primase: Large subunit, PriL. Primases synthesize the RNA primers required for DNA replication. Primases are grouped into two classes, bacteria/bacteriophage and archaeal/eukaryotic. The proteins in the two classes differ in structure and the replication apparatus components. Archaeal/eukaryotic core primase is a heterodimeric enzyme consisting of a small catalytic subunit (PriS) and a large subunit (PriL). In eukaryotic organisms, a heterotetrameric enzyme formed by DNA polymerase alpha, the B subunit and two primase subunits has primase activity. Although the catalytic activity resides within PriS, the PriL subunit is essential for primase function as disruption of the PriL gene in yeast is lethal. PriL is composed of two structural domains. Several functions have been proposed for PriL such as stabilization of the PriS, involvement in synthesis initiation, improvement of primase processivity, determination of product size and transfer of
Probab=22.89 E-value=4e+02 Score=28.46 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011229 65 AVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDM 110 (490)
Q Consensus 65 al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~ 110 (490)
....+-+.|....+|+ |..-..|--||++.+.+++.|+..|+..
T Consensus 227 Cm~~l~~~l~~~~hL~--h~gR~ql~lFLk~iGl~~~e~l~~~~~~ 270 (390)
T cd07322 227 CMRQLHEALRKNHHLK--HGGRLQLGLFLKGIGLSLEEALKFWRSE 270 (390)
T ss_pred HHHHHHHHHhcCCCCC--chhHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 3455666666666675 4454678899999999999999998776
No 60
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=22.64 E-value=3.6e+02 Score=22.00 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=34.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011229 441 EMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKKK 484 (490)
Q Consensus 441 e~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~~ 484 (490)
+.|++.=..++.++.++....+=..+.+.++.++++=++.+.++
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~ 69 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEK 69 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777788888888888888888888888888888776654
No 61
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=22.57 E-value=3.6e+02 Score=21.08 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=36.2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011229 54 IEDVHDAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDML 111 (490)
Q Consensus 54 ~ed~~~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l 111 (490)
.....++.+++.|.+|-+.-. .+- .+-.++|...+||.+.|.+.+.+..
T Consensus 4 ~~~~~~~~q~~~v~~~~~~Tg--------mn~-~~s~~cLe~~~Wd~~~Al~~F~~lk 52 (63)
T smart00804 4 PKPTLSPEQQEMVQAFSAQTG--------MNA-EYSQMCLEDNNWDYERALKNFTELK 52 (63)
T ss_pred CCCCCCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334567788888888876532 222 4778999999999999999887644
No 62
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=22.39 E-value=89 Score=31.32 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=14.4
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q 011229 445 AAVSRVDALEQELMSTRRAL 464 (490)
Q Consensus 445 ~a~~Rv~~lE~eL~~TKkaL 464 (490)
+|+.||-|||.||..=+-=+
T Consensus 119 ~AlqKIsALEdELs~LRaQI 138 (253)
T PF05308_consen 119 AALQKISALEDELSRLRAQI 138 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888888888887655433
No 63
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=22.28 E-value=61 Score=32.58 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.5
Q ss_pred ceEEEEecChhhHHHHHHHhhcCChh
Q 011229 242 NRMFIINAGSGFRMLWNTIKSFLDPK 267 (490)
Q Consensus 242 ~~i~IINaP~~f~~lw~iVKpfL~~k 267 (490)
..|+|||+||.+.--...+-|||...
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~ 262 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTL 262 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHH
Confidence 47999999999998888888876543
No 64
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.10 E-value=4.4e+02 Score=27.23 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSR--------------VDALEQELMSTRRALEDSLARQEELL 475 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~R--------------v~~lE~eL~~TKkaL~~~l~kQ~el~ 475 (490)
.+-.+.+|.+.|+.+++.|..-+.+|-.=.-+.|+++=.. +..++.+|..-+..+++.-.+..|+.
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~ 252 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELN 252 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888999999998888877621111223333333 44455555555556666666666666
Q ss_pred HHHHHHhh
Q 011229 476 AFIDKKKK 483 (490)
Q Consensus 476 ~~ie~~k~ 483 (490)
+-|...++
T Consensus 253 ~~I~~ae~ 260 (312)
T smart00787 253 TEIAEAEK 260 (312)
T ss_pred HHHHHHHH
Confidence 66655443
No 65
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.05 E-value=3.1e+02 Score=24.94 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 413 AVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEEL 474 (490)
Q Consensus 413 ~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el 474 (490)
....|..+||+++..|...-. +||+=++.=-.|+..||.||.++...|.++-.+.++-
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~----~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENE----QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445677777777777776643 6777777777777788888877777777666555443
No 66
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=22.03 E-value=89 Score=28.03 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=19.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhc
Q 011229 406 IYGAEYIAVMKRMAELEDAVTILS 429 (490)
Q Consensus 406 ~~~~~~~~~~~Rl~~LE~k~~~l~ 429 (490)
+-+-.+-.+|+||..||.||+.|-
T Consensus 83 tiAVLLddiLqRl~kLE~kvd~lv 106 (138)
T PF15027_consen 83 TIAVLLDDILQRLVKLESKVDNLV 106 (138)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHe
Confidence 334457889999999999999853
No 67
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.86 E-value=3.2e+02 Score=28.37 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=44.9
Q ss_pred CchhhHHHH----HHHHHHHHHHHHHhc-----cCCCCCchHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 011229 406 IYGAEYIAV----MKRMAELEDAVTILS-----AKPAAMLAEKE-----EMLNAAVSRVDALEQELMSTRRALED 466 (490)
Q Consensus 406 ~~~~~~~~~----~~Rl~~LE~k~~~l~-----~kp~~mp~eKE-----e~L~~a~~Rv~~lE~eL~~TKkaL~~ 466 (490)
.+.|+|.-+ -.|-+.|+.+..++. ..-+.+||+++ ++|..+-.|.+.|..|+..-+.=|.|
T Consensus 23 ~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 23 SERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666444 337778999998887 44445888877 89999999999999998776655433
No 68
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=21.78 E-value=2.1e+02 Score=26.99 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=34.7
Q ss_pred CchhhHHHHHHHHHHHHHHHH--HhccCCCCCchH-HHHHHHHHHhhHHHHHHHHHH
Q 011229 406 IYGAEYIAVMKRMAELEDAVT--ILSAKPAAMLAE-KEEMLNAAVSRVDALEQELMS 459 (490)
Q Consensus 406 ~~~~~~~~~~~Rl~~LE~k~~--~l~~kp~~mp~e-KEe~L~~a~~Rv~~lE~eL~~ 459 (490)
...+-+..|+||+.+|++=.+ -+... .+|.. |.++++|+-+.+.+.=..|++
T Consensus 51 s~re~i~~l~k~~~eL~~YLDP~~~e~~--~l~~~~K~~~ILa~e~~i~~~~~~Lek 105 (174)
T PF07426_consen 51 SKRERIKELFKRIEELNKYLDPNFIEEI--QLPDSAKLQIILAEEDEIKSTAELLEK 105 (174)
T ss_pred cccHHHHHHHHHHHHHHHHcCchhhhhc--ccchHHHHHHHHHccHHHHHHHHHHHH
Confidence 455678899999999977433 12222 36754 999999987776655444443
No 69
>PHA03162 hypothetical protein; Provisional
Probab=21.61 E-value=2.2e+02 Score=25.63 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=35.1
Q ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 011229 435 MLAEKEEMLNAAVSRVDALEQELMSTR-RALEDSLARQEELLAFIDKK 481 (490)
Q Consensus 435 mp~eKEe~L~~a~~Rv~~lE~eL~~TK-kaL~~~l~kQ~el~~~ie~~ 481 (490)
=|.+||-||++++.|.-+.=.+.+..| +++-+.+.-++|+.+-|.+.
T Consensus 52 Tp~qKea~I~s~v~~Lts~A~kKIe~KVr~~t~~~vTk~e~e~aL~~l 99 (135)
T PHA03162 52 TPAAKEAMIGAATAALTRQAAKKIEAKIRHETLKATTKEEFEAAIANI 99 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHhcC
Confidence 478999999999999988877766554 44555566667777777543
No 70
>PF13514 AAA_27: AAA domain
Probab=21.46 E-value=3.4e+02 Score=33.00 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDS 467 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~ 467 (490)
...|.+.++++|+.....|...|. +|++=.+-+..+..++..++.+|...+.-+...
T Consensus 212 ~~~p~~~~~~~l~~~l~~l~~~~~-~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 268 (1111)
T PF13514_consen 212 RAWPLLAELQQLEAELAELGEVPD-FPEDGAERLEQLEEELAEAQAQLERLQEELAQL 268 (1111)
T ss_pred HHhHHHHHHHHHHHHHHhcCCcCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999977775 999999888888888888887777776665543
No 71
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=21.29 E-value=1.3e+02 Score=30.16 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q 011229 411 YIAVMKRMAELEDAVTILSAKPA 433 (490)
Q Consensus 411 ~~~~~~Rl~~LE~k~~~l~~kp~ 433 (490)
..--|.||.+||++|.+|-.+-.
T Consensus 222 r~rkLdrisrLEdkv~~lk~~n~ 244 (279)
T KOG0837|consen 222 RKRKLDRISRLEDKVKTLKIYNR 244 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhh
Confidence 34568999999999999877654
No 72
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=21.08 E-value=1.8e+02 Score=25.79 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 011229 436 LAEKEEMLNAAVSRVDALEQELMSTR-RALEDSLARQEELLAFIDKK 481 (490)
Q Consensus 436 p~eKEe~L~~a~~Rv~~lE~eL~~TK-kaL~~~l~kQ~el~~~ie~~ 481 (490)
|.+||=||++++.|.-+.=.+.+.-| +++-+-+.-++|+.+-|.+.
T Consensus 43 p~qKe~~I~s~~~~Lss~A~~KIe~kVr~~t~~~vTk~e~~e~l~~l 89 (118)
T PF05812_consen 43 PAQKEAMITSAVSKLSSQASKKIEAKVRKLTAKLVTKEEIEEALKNL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcc
Confidence 78999999999999998877766554 44555566667777766543
No 73
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.04 E-value=4.4e+02 Score=31.78 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcc------CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011229 416 KRMAELEDAVTILSA------KPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKKK 484 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~------kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~~ 484 (490)
+|+..++-.+++|.+ .|...=.+...=+.....=|++.|+.++.+|.-++.+..+|.|+-+|.+..+.+
T Consensus 710 ~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~ 784 (1074)
T KOG0250|consen 710 RRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREK 784 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666655 233333444555566777788889999999999999999999999999988754
No 74
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.00 E-value=6.4e+02 Score=27.26 Aligned_cols=75 Identities=25% Similarity=0.306 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccC---CCCCchHHHHHH---------HHH-HhhHHHHHHHHHHHHHHHHHH-HHHHHH
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAK---PAAMLAEKEEML---------NAA-VSRVDALEQELMSTRRALEDS-LARQEE 473 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~k---p~~mp~eKEe~L---------~~a-~~Rv~~lE~eL~~TKkaL~~~-l~kQ~e 473 (490)
+..+..+||||+.||..-.-|+.| |+.-|+---++- -+| -.-||-|-+|.+.-|+-|-.| ..-|++
T Consensus 200 EalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek 279 (552)
T KOG2129|consen 200 EALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEK 279 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999877777655 333333222222 011 224666777777777766544 456788
Q ss_pred HHHHHHHHh
Q 011229 474 LLAFIDKKK 482 (490)
Q Consensus 474 l~~~ie~~k 482 (490)
++-|.+..+
T Consensus 280 ~~qy~~Ee~ 288 (552)
T KOG2129|consen 280 LMQYRAEEV 288 (552)
T ss_pred HHHHHHHHh
Confidence 888876544
No 75
>COG4479 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=2.5e+02 Score=22.66 Aligned_cols=48 Identities=19% Similarity=0.485 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHc---CCCHHHHHHHHHHHHHHH
Q 011229 67 DALRQALILEELLPSRHDDYHMMLRFLKAR---KFDIEKTKQMWSDMLQWR 114 (490)
Q Consensus 67 ~~fRq~L~~~~~LP~~~dD~~~LLRFLrAr---kfdvekA~~~l~~~l~WR 114 (490)
..|-+..-.+...|...+|++.+-+||.-. -|+...-=+.|++|+.|-
T Consensus 22 ~~lAn~af~D~sFPK~t~Df~~is~YLE~~a~f~~~m~~FDeiwe~Yle~~ 72 (74)
T COG4479 22 TELANLAFDDHSFPKHTDDFHEISDYLETNADFLFNMSVFDEIWEEYLEHL 72 (74)
T ss_pred HHHHHHHhhcccCCCCCccHHHHHHHHHhcCCcccchhhHHHHHHHHHHHh
Confidence 444455555666788888999999999754 355666667788888774
No 76
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=20.56 E-value=2.6e+02 Score=30.26 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011229 436 LAEKEEMLNAAVSRVDALEQELMSTRRALEDS 467 (490)
Q Consensus 436 p~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~ 467 (490)
|..++++|++=++-|+.||.||+..+--+..+
T Consensus 323 ~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~ 354 (590)
T COG5104 323 PLDRKDILFSFIRYVRRLEKELLSAIEERKAA 354 (590)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998776544443
No 77
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=20.05 E-value=3.1e+02 Score=25.26 Aligned_cols=58 Identities=28% Similarity=0.428 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLA 469 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~ 469 (490)
..+|..+.+-|. ||+.....+|- +-.-=+|-|+=|+.-|+-|=.+|++-|+|.+.|+.
T Consensus 2 keE~~~~~~~l~--~Ek~eHaKTK~--lLake~EKLqfAlgeieiL~kQl~rek~afe~a~~ 59 (153)
T PF15175_consen 2 KEEFEAVEKKLE--EEKAEHAKTKA--LLAKESEKLQFALGEIEILSKQLEREKLAFEKALG 59 (153)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHH--HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888 78888777762 22233578999999999999999999999988854
No 78
>COG4550 Predicted membrane protein [Function unknown]
Probab=20.02 E-value=1.2e+02 Score=26.74 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH
Q 011229 437 AEKEEMLNAAVSRVDALEQELMS 459 (490)
Q Consensus 437 ~eKEe~L~~a~~Rv~~lE~eL~~ 459 (490)
.+|++-|..+-.|||+||+|+..
T Consensus 60 y~K~eAlkqses~i~~le~ei~~ 82 (120)
T COG4550 60 YDKEEALKQSESKIDELEAEIDH 82 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999863
Done!