Query 011229
Match_columns 490
No_of_seqs 316 out of 1529
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 03:49:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 7.8E-57 2.7E-61 458.5 20.9 268 54-324 31-305 (320)
2 1aua_A Phosphatidylinositol tr 100.0 5E-56 1.7E-60 446.8 22.8 266 55-323 23-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 3.7E-47 1.3E-51 398.1 24.6 243 56-304 6-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 5.3E-46 1.8E-50 378.0 19.9 229 59-303 55-295 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 8.6E-46 2.9E-50 364.7 17.9 230 57-302 3-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.1 9.2E-11 3.1E-15 115.4 7.0 139 129-292 5-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 3E-09 1E-13 106.3 5.3 127 144-292 36-163 (290)
8 2bni_A General control protein 79.0 0.58 2E-05 30.8 0.8 16 416-431 1-16 (34)
9 2hy6_A General control protein 78.9 0.58 2E-05 30.8 0.8 16 416-431 1-16 (34)
10 2oxj_A Hybrid alpha/beta pepti 77.1 3.1 0.00011 27.3 3.8 30 416-453 1-30 (34)
11 3c3g_A Alpha/beta peptide with 76.5 0.82 2.8E-05 29.9 0.9 14 417-430 1-14 (33)
12 3c3f_A Alpha/beta peptide with 73.6 5 0.00017 26.3 4.1 15 416-430 1-15 (34)
13 2wq1_A General control protein 72.6 5.5 0.00019 26.0 4.1 15 417-431 1-15 (33)
14 1uo4_A General control protein 72.4 3.9 0.00013 26.9 3.4 15 416-430 1-15 (34)
15 1kd8_B GABH BLL, GCN4 acid bas 71.2 1.3 4.5E-05 29.5 0.9 16 416-431 1-16 (36)
16 3m48_A General control protein 69.9 4.4 0.00015 26.5 3.2 14 417-430 1-14 (33)
17 1kd8_A GABH AIV, GCN4 acid bas 68.1 6.7 0.00023 26.1 3.8 15 416-430 1-15 (36)
18 1nkp_A C-MYC, MYC proto-oncoge 65.3 33 0.0011 27.4 8.4 67 416-482 16-86 (88)
19 2dam_A ETEA protein; KIAA0887, 63.9 20 0.00067 27.3 6.5 44 57-108 13-56 (67)
20 2r2v_A GCN4 leucine zipper; co 63.5 2.3 8E-05 28.0 0.9 16 416-431 1-16 (34)
21 1nkp_B MAX protein, MYC proto- 61.7 33 0.0011 26.8 7.7 64 416-479 12-78 (83)
22 3a8y_C BAG family molecular ch 60.8 16 0.00056 31.9 6.1 66 410-482 35-109 (142)
23 2dal_A Protein KIAA0794; FAS a 54.4 34 0.0012 25.4 6.2 40 59-107 12-51 (62)
24 2dhy_A CUE domain-containing p 53.5 31 0.0011 26.3 5.9 48 55-110 11-58 (67)
25 1v92_A NSFL1 cofactor P47; 3-h 53.1 27 0.00094 23.8 5.2 37 62-107 5-41 (46)
26 1m62_A BAG-family molecular ch 50.7 30 0.001 27.8 5.7 66 409-481 11-85 (87)
27 2dna_A Unnamed protein product 48.3 69 0.0023 24.4 7.1 45 56-109 11-57 (67)
28 3htk_A Structural maintenance 47.9 76 0.0026 22.9 7.5 46 439-484 10-55 (60)
29 1ugo_A BCL2-associated athanog 47.8 44 0.0015 27.5 6.3 74 408-481 17-92 (99)
30 1ic2_A Tropomyosin alpha chain 47.7 57 0.0019 25.4 6.9 60 410-473 14-73 (81)
31 3etw_A Adhesin A; antiparallel 44.8 64 0.0022 27.4 7.1 74 412-485 5-108 (119)
32 3e21_A HFAF1, FAS-associated f 44.1 56 0.0019 22.8 5.6 37 62-106 5-41 (45)
33 2oqq_A Transcription factor HY 43.4 19 0.00065 24.8 2.9 16 414-429 15-30 (42)
34 1z96_A DNA-damage, UBA-domain 43.4 33 0.0011 22.5 4.3 21 87-107 19-39 (40)
35 2dah_A Ubiquilin-3; UBA domain 41.7 69 0.0024 23.1 6.0 38 64-110 11-48 (54)
36 1wgl_A TOLL-interacting protei 41.1 29 0.00099 25.7 3.9 38 64-109 11-48 (59)
37 1uk5_A BAG-family molecular ch 40.2 50 0.0017 27.7 5.7 68 408-482 29-105 (111)
38 1wr1_B Ubiquitin-like protein 37.7 69 0.0023 23.5 5.5 26 84-109 30-55 (58)
39 3rrk_A V-type ATPase 116 kDa s 37.3 1E+02 0.0034 30.4 8.6 65 419-483 199-269 (357)
40 1yke_B RNA polymerase II holoe 36.0 2.2E+02 0.0076 24.9 10.0 69 406-482 50-126 (151)
41 1vej_A Riken cDNA 4931431F19; 35.2 78 0.0027 24.5 5.7 25 84-108 42-66 (74)
42 1m7k_A Silencer of death domai 34.3 67 0.0023 26.4 5.4 67 407-480 22-97 (99)
43 2bwb_A Ubiquitin-like protein 34.3 75 0.0026 22.1 5.0 25 84-108 20-44 (46)
44 2di0_A Activating signal coint 33.7 1.1E+02 0.0036 23.6 6.1 43 59-109 10-52 (71)
45 2z5i_I TM, tropomyosin alpha-1 33.5 31 0.0011 23.6 2.8 20 444-463 20-39 (40)
46 1oai_A Nuclear RNA export fact 31.1 1.2E+02 0.0041 22.3 5.9 47 57-112 2-48 (59)
47 3u1c_A Tropomyosin alpha-1 cha 29.8 1.1E+02 0.0037 24.9 6.1 56 414-473 21-76 (101)
48 1hlo_A Protein (transcription 29.1 72 0.0024 24.7 4.7 48 415-462 21-71 (80)
49 2ql2_B Neurod1, neurogenic dif 29.0 66 0.0023 23.7 4.2 43 416-458 12-58 (60)
50 2ke4_A CDC42-interacting prote 28.9 73 0.0025 26.0 4.8 46 421-467 41-88 (98)
51 1vdl_A Ubiquitin carboxyl-term 28.4 1.2E+02 0.0042 23.5 5.6 39 62-108 24-62 (80)
52 1ykh_B RNA polymerase II holoe 28.2 2.8E+02 0.0095 23.6 10.1 68 406-481 50-125 (132)
53 4aya_A DNA-binding protein inh 27.2 82 0.0028 25.8 4.8 45 415-459 34-82 (97)
54 1q02_A Sequestosome 1; helical 26.6 54 0.0019 23.7 3.1 22 87-108 27-48 (52)
55 1ufz_A Hypothetical protein BA 26.1 1.2E+02 0.0041 24.1 5.4 39 64-109 36-74 (83)
56 3hf0_A GCN4-PLI SIDE chain seq 25.3 1.3E+02 0.0046 19.0 4.5 28 439-466 6-33 (34)
57 1otr_A Protein CUE2; protein-p 25.0 74 0.0025 22.6 3.6 30 79-110 15-44 (49)
58 2ovc_A Potassium voltage-gated 24.7 37 0.0013 22.3 1.8 20 412-431 6-25 (33)
59 3cve_A Homer protein homolog 1 24.3 2.4E+02 0.0083 21.6 7.3 31 413-461 4-34 (72)
60 1am9_A Srebp-1A, protein (ster 24.1 2.4E+02 0.0081 21.8 6.9 23 437-459 39-61 (82)
61 1g6u_A Domain swapped dimer; d 23.7 54 0.0018 22.3 2.5 26 406-431 17-42 (48)
62 3t98_B Nucleoporin NUP58/NUP45 22.8 2.6E+02 0.0088 22.5 7.0 60 410-473 20-79 (93)
63 2cwb_A Chimera of immunoglobul 22.5 1.1E+02 0.0038 25.4 4.8 26 84-109 79-104 (108)
64 3na7_A HP0958; flagellar bioge 22.4 2.8E+02 0.0096 26.0 8.5 50 416-469 104-153 (256)
65 2q9q_C DNA replication complex 22.3 1.4E+02 0.0047 27.2 6.0 25 434-458 20-44 (196)
66 1g8x_A Myosin II heavy chain f 22.2 2.5E+02 0.0084 32.3 9.2 61 415-478 820-888 (1010)
67 2dzl_A Protein FAM100B; UBA-li 21.7 1.8E+02 0.0063 21.7 5.6 35 64-107 19-53 (66)
68 2l5g_B Putative uncharacterize 21.3 1.5E+02 0.0051 20.4 4.4 34 439-476 4-37 (42)
69 2lw1_A ABC transporter ATP-bin 21.3 3E+02 0.01 21.5 7.7 60 409-476 22-84 (89)
70 1pl5_A Regulatory protein SIR4 21.2 89 0.0031 25.9 3.9 36 448-483 95-130 (142)
71 2oo3_A Protein involved in cat 21.1 43 0.0015 32.7 2.4 31 237-267 233-263 (283)
72 1lq7_A Alpha3W; three helix bu 20.7 1.2E+02 0.0042 21.9 4.1 11 418-428 4-14 (67)
73 1mdy_A Protein (MYOD BHLH doma 20.6 1.3E+02 0.0045 22.7 4.5 42 416-457 22-66 (68)
74 3ol1_A Vimentin; structural ge 20.6 3.7E+02 0.013 22.3 8.5 56 417-483 42-97 (119)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=7.8e-57 Score=458.55 Aligned_cols=268 Identities=33% Similarity=0.622 Sum_probs=245.4
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccchhhH----
Q 011229 54 IEDVHDAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFK---- 129 (490)
Q Consensus 54 ~ed~~~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~~---- 129 (490)
....++++|+++|++||++|.+++ ++...|| .+||||||||+||+++|.+||+++++||+++++|+++.++.++
T Consensus 31 ~~~~lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~ 108 (320)
T 3q8g_A 31 TPGNLTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAE 108 (320)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccc
Confidence 345678999999999999999988 4556666 7999999999999999999999999999999999988776554
Q ss_pred --hHHHHHhhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEE
Q 011229 130 --ELSQVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTI 207 (490)
Q Consensus 130 --el~~v~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvI 207 (490)
+...+.++|++++||+|++||||+|+++|++|++++.+.++.+++++++++.+|.+++..+++|+...+..++++++|
T Consensus 109 ~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~I 188 (320)
T 3q8g_A 109 DKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTV 188 (320)
T ss_dssp HHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEE
T ss_pred hhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEE
Confidence 344567889999999999999999999999999998888899999999999999999887888887777789999999
Q ss_pred EEcCCCCcccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHccc
Q 011229 208 LDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEII 287 (490)
Q Consensus 208 iDl~G~sl~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~I 287 (490)
+|++|+|++++++ ..++++.+++++|++||+||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++|
T Consensus 189 iD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i 267 (320)
T 3q8g_A 189 LDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQI 267 (320)
T ss_dssp EECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHS
T ss_pred EECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhC
Confidence 9999999999875 378899999999999999999999999999999999999999999999999999988888999999
Q ss_pred CCCCCCccCCCCCcCCC-CCCCcCCCCCCCCChHHHhh
Q 011229 288 DASELPEFLGGSCTCAD-QGGCMRSDKGPWKDPDILKM 324 (490)
Q Consensus 288 d~~~LP~eyGGt~~~~~-~~gc~~~~~gpw~dp~~~~~ 324 (490)
|+++||++|||+++|.+ +|||+.+|.|||++|++++.
T Consensus 268 ~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~~ 305 (320)
T 3q8g_A 268 PIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGP 305 (320)
T ss_dssp CGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCCT
T ss_pred ChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcCC
Confidence 99999999999999987 69999999999999988653
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=5e-56 Score=446.77 Aligned_cols=266 Identities=39% Similarity=0.691 Sum_probs=243.3
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccchhhHhHHHH
Q 011229 55 EDVHDAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQV 134 (490)
Q Consensus 55 ed~~~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v 134 (490)
....+++|+++|++||++|.+++ ++...|| .+|+||||||+||+++|.++|+++++||++++++.++.++.+.+...+
T Consensus 23 ~~~l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~ 100 (296)
T 1aua_A 23 PGNLDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLI 100 (296)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHH
Confidence 34567889999999999999887 4666666 799999999999999999999999999999999888776554444556
Q ss_pred HhhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCC
Q 011229 135 LECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVG 214 (490)
Q Consensus 135 ~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~s 214 (490)
.++|++++||+|++||||+|+++|++|++++.+..+.+++++++++.+|.+++..+++|+...+.++.++++|+|++|+|
T Consensus 101 ~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s 180 (296)
T 1aua_A 101 AKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGIS 180 (296)
T ss_dssp GGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCC
T ss_pred HHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCC
Confidence 78899889999999999999999999999988888999999999999999998878888877778899999999999999
Q ss_pred cccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCCCCCc
Q 011229 215 LKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPE 294 (490)
Q Consensus 215 l~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~ 294 (490)
++|+++. +++++.+++++|+|||+||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++||+++||+
T Consensus 181 ~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~ 259 (296)
T 1aua_A 181 ISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPV 259 (296)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBG
T ss_pred HHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcH
Confidence 9999854 789999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCCCCcCCC-CCCCcCCCCCCCCChHHHh
Q 011229 295 FLGGSCTCAD-QGGCMRSDKGPWKDPDILK 323 (490)
Q Consensus 295 eyGGt~~~~~-~~gc~~~~~gpw~dp~~~~ 323 (490)
+|||+++|.+ +|||+.++.|||++|++++
T Consensus 260 ~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 260 KFGGKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp GGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred HhCCCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 9999999987 5899999999999999865
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=3.7e-47 Score=398.09 Aligned_cols=243 Identities=30% Similarity=0.458 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccchhhHhHHHH
Q 011229 56 DVHDAEEIKAVDALRQALILEE-LLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQV 134 (490)
Q Consensus 56 d~~~~ee~~al~~fRq~L~~~~-~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v 134 (490)
..++++|+++|++||++|...+ .+| ..+| .+|+||||||+||+++|.+||+++++||++++++.++... .++ .+
T Consensus 6 ~~l~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~-~~~--~~ 80 (403)
T 1olm_A 6 GDLSPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQ-PPE--VI 80 (403)
T ss_dssp TBCCHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSC-CCH--HH
T ss_pred cCCCHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccC-CHH--HH
Confidence 4568999999999999998873 455 3455 7999999999999999999999999999999998887632 222 24
Q ss_pred HhhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCC
Q 011229 135 LECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVG 214 (490)
Q Consensus 135 ~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~s 214 (490)
.+++++++||+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.. +.++...+.++.|+++|+|++|+|
T Consensus 81 ~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~-~~~s~~~g~~v~~~~~I~D~~g~s 159 (403)
T 1olm_A 81 QQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCEGLG 159 (403)
T ss_dssp HHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECTTCC
T ss_pred HHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HhhHHhhCCcccceEEEEECCCCC
Confidence 5678888999999999999999999999998888899999999999999998753 334444455799999999999999
Q ss_pred cccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCCCCCc
Q 011229 215 LKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPE 294 (490)
Q Consensus 215 l~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP~ 294 (490)
++|+++..+++++.+++++|+|||+||+++||||+|++|.++|+++||||+++|++||+|+++++.+.|.++||+++||.
T Consensus 160 l~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~ 239 (403)
T 1olm_A 160 LKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPV 239 (403)
T ss_dssp GGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBG
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCch
Confidence 99998888899999999999999999999999999999999999999999999999999999888789999999999999
Q ss_pred cCCCCCcCCC
Q 011229 295 FLGGSCTCAD 304 (490)
Q Consensus 295 eyGGt~~~~~ 304 (490)
+|||++++++
T Consensus 240 ~yGG~~~~~~ 249 (403)
T 1olm_A 240 EYGGTMTDPD 249 (403)
T ss_dssp GGTSSBCCTT
T ss_pred hhCCCcCCCC
Confidence 9999998854
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=5.3e-46 Score=378.04 Aligned_cols=229 Identities=18% Similarity=0.317 Sum_probs=199.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccchh
Q 011229 59 DAEEIKAVDALRQALILEELLP-----------SRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFE 127 (490)
Q Consensus 59 ~~ee~~al~~fRq~L~~~~~LP-----------~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~ 127 (490)
++...++|++||+||.++|++| .+.|| .+|+||||||+||+++|.++|.++++||++++. ++.+..
T Consensus 55 ~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~--~~~~~~ 131 (316)
T 3hx3_A 55 EETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYPE--LFDSLS 131 (316)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGG--GTTTCC
T ss_pred hHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCch--hhcCCC
Confidence 4457789999999999999874 34455 799999999999999999999999999999973 444444
Q ss_pred hHhHHHHH-hhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEE
Q 011229 128 FKELSQVL-ECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTT 206 (490)
Q Consensus 128 ~~el~~v~-~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tv 206 (490)
++++.... .+++.+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. ...++.|+++
T Consensus 132 ~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~----~~~~~~~r~~~~~lE~~l~~--------~~~~v~g~v~ 199 (316)
T 3hx3_A 132 PEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQE----ITFDEILQAYCFILEKLLEN--------EETQINGFCI 199 (316)
T ss_dssp HHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTT----SCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEE
T ss_pred HHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCC----CCHHHHHHHHHHHHHHHHhc--------ccCCcceEEE
Confidence 55554433 45667789999999999999999999987 47899999999999998753 2356889999
Q ss_pred EEEcCCCCcccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcc
Q 011229 207 ILDVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEI 286 (490)
Q Consensus 207 IiDl~G~sl~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~ 286 (490)
|+|++|+|++|+++.....++.+++++|++||+||+++||||+|++|.++|+++||||+++|++||+|+++++ +.|+++
T Consensus 200 IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~-~~L~~~ 278 (316)
T 3hx3_A 200 IENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDL-SGFYQE 278 (316)
T ss_dssp EEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCC-HHHHHH
T ss_pred EEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCH-HHHHhh
Confidence 9999999999987666788999999999999999999999999999999999999999999999999998766 799999
Q ss_pred cCCCCCCccCCCCCcCC
Q 011229 287 IDASELPEFLGGSCTCA 303 (490)
Q Consensus 287 Id~~~LP~eyGGt~~~~ 303 (490)
||+++||++|||++++.
T Consensus 279 I~~~~LP~eyGG~~~~~ 295 (316)
T 3hx3_A 279 IDENILPSDFGGTLPKY 295 (316)
T ss_dssp SCGGGSBGGGTSSBCCC
T ss_pred CCHhhCcHhhCCCCCCc
Confidence 99999999999999763
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=8.6e-46 Score=364.74 Aligned_cols=230 Identities=23% Similarity=0.325 Sum_probs=193.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCccccchhhHhHHHH
Q 011229 57 VHDAEEIKAVDALRQALILEE--LLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQWRKEFGTDDIMQDFEFKELSQV 134 (490)
Q Consensus 57 ~~~~ee~~al~~fRq~L~~~~--~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~WRk~~~~d~i~~d~~~~el~~v 134 (490)
.++++++++|++||+++...+ ++|...+| .+|+||||||+||+++|.++++++++||++++. +..+..++++.+.
T Consensus 3 ~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~ 79 (262)
T 1r5l_A 3 HMSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGL 79 (262)
T ss_dssp ------CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHH
Confidence 457888999999999998875 45666666 799999999999999999999999999999862 3333333333332
Q ss_pred -HhhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCC
Q 011229 135 -LECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGV 213 (490)
Q Consensus 135 -~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~ 213 (490)
...+..+++|+|++||||+|+++|++|+++ .+.+++++++++.+|.++.. ...++.|+++|+|++|+
T Consensus 80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~----~~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~ 147 (262)
T 1r5l_A 80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV----FTAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGW 147 (262)
T ss_dssp HHTTCEEECSSCCTTCCEEEEEEGGGCCTTT----SCHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTC
T ss_pred HHcCCccCCCCcCCCCCEEEEEeccccCccc----CCHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCC
Confidence 334555678999999999999999999987 36788999999999987654 12346799999999999
Q ss_pred CcccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHHhhcCChhhhcceEEcCCcchHHHHcccCCCCCC
Q 011229 214 GLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELP 293 (490)
Q Consensus 214 sl~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~LP 293 (490)
|++|+++...++++.+++++|+|||+||+++||||+|++|+++|+++||||+++|++||+|+++++.+.|.++|| ++||
T Consensus 148 s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP 226 (262)
T 1r5l_A 148 QFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILP 226 (262)
T ss_dssp CHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSC
T ss_pred CHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCc
Confidence 999987766789999999999999999999999999999999999999999999999999999888899999999 9999
Q ss_pred ccCCCCCcC
Q 011229 294 EFLGGSCTC 302 (490)
Q Consensus 294 ~eyGGt~~~ 302 (490)
++|||++..
T Consensus 227 ~~yGG~~~~ 235 (262)
T 1r5l_A 227 LEYGGEEFS 235 (262)
T ss_dssp GGGTCSSCC
T ss_pred HhhCCCCCC
Confidence 999999754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.09 E-value=9.2e-11 Score=115.38 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=110.9
Q ss_pred HhHHHHHhhcCCCCccCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEE
Q 011229 129 KELSQVLECYPHGHHGVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTIL 208 (490)
Q Consensus 129 ~el~~v~~~~p~~~~G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIi 208 (490)
.++.+..-.| ..|.|++||||+++..+++++.. .+.+.++.|.+..++... -...++|+
T Consensus 5 ~~i~~~~ify---~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~--------------~~~y~lV~ 63 (256)
T 3pg7_A 5 KALKTLSIFY---QAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVV 63 (256)
T ss_dssp TTHHHHTSEE---EEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEE
T ss_pred hHHHHcCCEE---EcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEE
Confidence 4454444444 23799999999999999998865 477878777777666443 24689999
Q ss_pred EcCCCCcccccHHHHHHHHHHHHHhcccCccccceEEEEecChhhHHHHHHH-hhcCChhhhcceEEcCCcchHHHHccc
Q 011229 209 DVQGVGLKSFNKAARELITQIQKIDGDNYPETLNRMFIINAGSGFRMLWNTI-KSFLDPKTTAKIHVLGNKYQSKLLEII 287 (490)
Q Consensus 209 Dl~G~sl~~~~~~~~~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw~iV-KpfL~~kt~~KI~~lg~~~~~~L~e~I 287 (490)
|+.|++..+.+ ..++++.+..++...|...|+++||+|++++|+..|..+ ++|.+.+...|++++++ .++|.++|
T Consensus 64 d~T~~~~~n~p--~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i 139 (256)
T 3pg7_A 64 DLTHTGPSNRF--KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHI 139 (256)
T ss_dssp ECTTCCGGGCC--CHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTS
T ss_pred ECCCCCcccCC--cHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhc
Confidence 99999987655 367899999999999999999999999999999776654 56666688899999976 68999999
Q ss_pred CCCCC
Q 011229 288 DASEL 292 (490)
Q Consensus 288 d~~~L 292 (490)
+.++|
T Consensus 140 ~~~~L 144 (256)
T 3pg7_A 140 EHEQQ 144 (256)
T ss_dssp CGGGC
T ss_pred CHHHc
Confidence 87666
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.80 E-value=3e-09 Score=106.28 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=95.8
Q ss_pred cCCCCCCcEEEEEcCcCCchhhhhhccHHHHHHHHHHHHHHHHhhhchhhhHhhhCCCCcEEEEEEcCCCCcccccHHHH
Q 011229 144 GVDKEGQPVYIERLGLVDATKLMQVTNMERYLNYHVREFERTFDIKFPACSIAAKKHIDQSTTILDVQGVGLKSFNKAAR 223 (490)
Q Consensus 144 G~Dk~GRPVli~rlg~~dp~~l~~~~t~d~~~r~~v~~lE~~~~~~~~acs~~~~~~i~~~tvIiDl~G~sl~~~~~~~~ 223 (490)
|.|++||||+++.+++++... .+.+.++-|.+..++..+ -...++|+|+.|++..+-+ ..
T Consensus 36 g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p--~~ 95 (290)
T 3peg_A 36 GTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRF--KT 95 (290)
T ss_dssp EECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCC--CH
T ss_pred ccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCC--hH
Confidence 789999999999999998765 467777766666655433 2468999999999987654 36
Q ss_pred HHHHHHHHHhcccCccccceEEEEecChhhHHHH-HHHhhcCChhhhcceEEcCCcchHHHHcccCCCCC
Q 011229 224 ELITQIQKIDGDNYPETLNRMFIINAGSGFRMLW-NTIKSFLDPKTTAKIHVLGNKYQSKLLEIIDASEL 292 (490)
Q Consensus 224 ~llk~i~~ilq~~YPerL~~i~IINaP~~f~~lw-~iVKpfL~~kt~~KI~~lg~~~~~~L~e~Id~~~L 292 (490)
++++.+..++...|+..++++||+|++++|+..+ ...++|.+.+.-+|+.++++- ..|..+++++++
T Consensus 96 ~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 96 DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp HHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred HHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 7899999999999999999999999999998754 566788888889999998653 458888877643
No 8
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=78.96 E-value=0.58 Score=30.84 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhccC
Q 011229 416 KRMAELEDAVTILSAK 431 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~k 431 (490)
+||..||+||++|-.+
T Consensus 1 eRMnQLEdKvEeLl~~ 16 (34)
T 2bni_A 1 XRMKQIEDKLEEILSK 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHc
Confidence 5899999999988653
No 9
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=78.91 E-value=0.58 Score=30.78 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhccC
Q 011229 416 KRMAELEDAVTILSAK 431 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~k 431 (490)
+||..||+||++|-++
T Consensus 1 ~RMnQLEdkVEeLl~~ 16 (34)
T 2hy6_A 1 MKVKQLADAVEELASA 16 (34)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHh
Confidence 5888999999887643
No 10
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.15 E-value=3.1 Score=27.33 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHH
Q 011229 416 KRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDAL 453 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~l 453 (490)
+||..||+||.+|-.+ |+ -|.+-|.|.++|
T Consensus 1 eRMnQLE~kVEeLl~~-------n~-~Le~eV~rLk~l 30 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXK-------NX-HLEXEVXRLKXL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-------hh-hHHHHHHHHHHH
Confidence 5899999999888543 33 244455555544
No 11
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=76.46 E-value=0.82 Score=29.87 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcc
Q 011229 417 RMAELEDAVTILSA 430 (490)
Q Consensus 417 Rl~~LE~k~~~l~~ 430 (490)
||..||+||++|-.
T Consensus 1 RMnQLEdKvEeLl~ 14 (33)
T 3c3g_A 1 RMKXIEXKLXEIXS 14 (33)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78889999988754
No 12
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=73.59 E-value=5 Score=26.35 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcc
Q 011229 416 KRMAELEDAVTILSA 430 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~ 430 (490)
+||..||+||++|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 589999999988754
No 13
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=72.57 E-value=5.5 Score=26.02 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhccC
Q 011229 417 RMAELEDAVTILSAK 431 (490)
Q Consensus 417 Rl~~LE~k~~~l~~k 431 (490)
||..||+||++|-++
T Consensus 1 RMnQLEdKVEell~~ 15 (33)
T 2wq1_A 1 RMKQLEDKIEENTSK 15 (33)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHh
Confidence 788899999887543
No 14
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=72.45 E-value=3.9 Score=26.93 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhcc
Q 011229 416 KRMAELEDAVTILSA 430 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~ 430 (490)
.||..||+||++|-+
T Consensus 1 ~RM~QLEdKVEeLl~ 15 (34)
T 1uo4_A 1 XRMKQIEDKGEEILS 15 (34)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 388899999988754
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=71.16 E-value=1.3 Score=29.47 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhccC
Q 011229 416 KRMAELEDAVTILSAK 431 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~k 431 (490)
+||..||+||++|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5888999999887654
No 16
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=69.95 E-value=4.4 Score=26.53 Aligned_cols=14 Identities=50% Similarity=0.563 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhcc
Q 011229 417 RMAELEDAVTILSA 430 (490)
Q Consensus 417 Rl~~LE~k~~~l~~ 430 (490)
||..||+||++|-.
T Consensus 1 RM~QLE~kVEeLl~ 14 (33)
T 3m48_A 1 RMAQLEAKVEELLS 14 (33)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 78889999987743
No 17
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.12 E-value=6.7 Score=26.11 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcc
Q 011229 416 KRMAELEDAVTILSA 430 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~ 430 (490)
+||..||+||.+|-.
T Consensus 1 eRMnQLE~kVEeLl~ 15 (36)
T 1kd8_A 1 XEVKQLEAEVEEIES 15 (36)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 478888888877643
No 18
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=65.29 E-value=33 Score=27.38 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011229 416 KRMAELEDAVTILSAKPAAML----AEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKK 482 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~kp~~mp----~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k 482 (490)
+|-.+|=+.+..|..-=|.+| ..|-.+|..|++=|+.|+.+...-..-...--.+|.+|.+-|+.++
T Consensus 16 ~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 16 QRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888877655554 5799999999999999998876655555555566677777666553
No 19
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.93 E-value=20 Score=27.26 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011229 57 VHDAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWS 108 (490)
Q Consensus 57 ~~~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~ 108 (490)
.++.++.+.|.+|...-. ..|...-..||.+.+||++.|+..+-
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456778888999988641 13446788999999999999987763
No 20
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=63.46 E-value=2.3 Score=27.97 Aligned_cols=16 Identities=13% Similarity=0.370 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhccC
Q 011229 416 KRMAELEDAVTILSAK 431 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~k 431 (490)
+||..||+||++|-+|
T Consensus 1 ~RMnQledKvEel~~~ 16 (34)
T 2r2v_A 1 MKLKQVADKLEEVASK 16 (34)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 4888999999888654
No 21
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.65 E-value=33 Score=26.82 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 416 KRMAELEDAVTILSAKPAAML---AEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFID 479 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~kp~~mp---~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie 479 (490)
+|...+=+.+..|.+=-|..| ..|-.+|..|++=|+.|+.+...-+.-+.+--..+.+|-+-|.
T Consensus 12 ~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 12 KRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888876544332 3799999999999999998877766555554444555554444
No 22
>3a8y_C BAG family molecular chaperone regulator 5; BAG domain, HSP70, ATPase domain, protein complex, triple helix, structural genomics, NPPSFA; 2.30A {Homo sapiens}
Probab=60.77 E-value=16 Score=31.94 Aligned_cols=66 Identities=18% Similarity=0.396 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHH-----HHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKE-----EMLNAAVSRVDALEQE----LMSTRRALEDSLARQEELLAFIDK 480 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKE-----e~L~~a~~Rv~~lE~e----L~~TKkaL~~~l~kQ~el~~~ie~ 480 (490)
.+..+..++++|+.+|+....| +.||| |||.--+=+.|++|.+ +-..+|+ ++-+=.-++++||.
T Consensus 35 aI~~V~~eVd~L~~eV~~F~G~----~~dkey~~L~E~L~k~LLKLD~IdteGd~~vR~aRK~---aVk~VQ~~Le~LD~ 107 (142)
T 3a8y_C 35 AVWNVLGNLSEIQGEVLSFDGN----RTDKNYIRLEELLTKQLLALDAVDPQGEEKCKAARKQ---AVRLAQNILSYLDL 107 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSC----TTSHHHHHHHHHHHHHHHHHHTCCCTTCHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 5888999999999999999777 56774 7999999999999887 4444544 45555668888887
Q ss_pred Hh
Q 011229 481 KK 482 (490)
Q Consensus 481 ~k 482 (490)
++
T Consensus 108 k~ 109 (142)
T 3a8y_C 108 KS 109 (142)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 23
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.37 E-value=34 Score=25.40 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011229 59 DAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMW 107 (490)
Q Consensus 59 ~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l 107 (490)
.+.+.+.|.+|...-. .+...-..||.+.+||++.|+..+
T Consensus 12 s~~~~e~i~qF~~iTg---------~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 12 SSALKGLIQQFTTITG---------ASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHHHHHTC---------CCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5666778899986531 224578899999999999998776
No 24
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.51 E-value=31 Score=26.28 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=34.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011229 55 EDVHDAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDM 110 (490)
Q Consensus 55 ed~~~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~ 110 (490)
......+..+++++|++. .|. .+. ..+..-|+++++|++.|++.|.++
T Consensus 11 ~~~~~~~~~~~v~~L~~M------FP~-lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 11 RQVRRLEFNQAMDDFKTM------FPN-MDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCCCSHHHHHHHHHH------CSS-SCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHH------CCC-CCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 333334445777787776 453 344 678899999999999999988654
No 25
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=53.05 E-value=27 Score=23.84 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011229 62 EIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMW 107 (490)
Q Consensus 62 e~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l 107 (490)
+.+.|.+|...- + .+...-..||.+++||++.|+..+
T Consensus 5 ~~~~i~~F~~iT---g------~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 5 RQDALREFVAVT---G------AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHHHHHT---C------CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHHHHHh---C------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 456788887652 1 134578899999999999998765
No 26
>1m62_A BAG-family molecular chaperone regulator-4; BAG domain, SODD, silencer of death domains, HSP70/HSC70 CO-chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=50.71 E-value=30 Score=27.81 Aligned_cols=66 Identities=26% Similarity=0.440 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCchHH-----HHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 011229 409 AEYIAVMKRMAELEDAVTILSAKPAAMLAEK-----EEMLNAAVSRVDALEQE----LMSTRRALEDSLARQEELLAFID 479 (490)
Q Consensus 409 ~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eK-----Ee~L~~a~~Rv~~lE~e----L~~TKkaL~~~l~kQ~el~~~ie 479 (490)
.-+..+...+.+|+..|+....|+ .|| +|||.--+=..|++|.| +-+.+|+. +-+=.-++++||
T Consensus 11 ~~I~~I~~ev~~L~~~V~~f~g~~----~dkey~~L~E~L~k~LLkLD~Ie~eG~~~~R~~RK~~---Vk~iQ~~l~~LD 83 (87)
T 1m62_A 11 KKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEKLE 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHHHH
Confidence 357888999999999999999884 566 47899999999999887 55555543 333345666666
Q ss_pred HH
Q 011229 480 KK 481 (490)
Q Consensus 480 ~~ 481 (490)
.+
T Consensus 84 ~k 85 (87)
T 1m62_A 84 KK 85 (87)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 27
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.31 E-value=69 Score=24.39 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=30.0
Q ss_pred CCCCHHH--HHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 56 DVHDAEE--IKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 56 d~~~~ee--~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
+..++++ ...|++|++. -..|...-++-|++.++|+++|++.|..
T Consensus 11 ~~~~pe~~y~~ql~qL~~M---------GF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 11 SLQAPEVRFSKEMECLQAM---------GFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp SSCCHHHHTHHHHHHHHHH---------TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3445554 3355555544 1344456789999999999999987754
No 28
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=47.86 E-value=76 Score=22.92 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011229 439 KEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKKK 484 (490)
Q Consensus 439 KEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~~ 484 (490)
.++-++..=.+++.++.++..++..|..+...+..+.+.|.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556888899999999999999999999999999888653
No 29
>1ugo_A BCL2-associated athanogene 5; triple helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, chaperone; NMR {Mus musculus} SCOP: a.7.7.1
Probab=47.79 E-value=44 Score=27.50 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCchHH-HHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAMLAEK-EEMLNAAVSRVDALEQELMS-TRRALEDSLARQEELLAFIDKK 481 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eK-Ee~L~~a~~Rv~~lE~eL~~-TKkaL~~~l~kQ~el~~~ie~~ 481 (490)
-.-+..+...+.+|+..|+....|+.+--+-+ +|||.--+=..|++|.|=.. .+-|=.+++-+=.-++++||++
T Consensus 17 i~kI~~I~~ev~~L~~~V~~f~g~k~dkey~~L~E~L~k~LLkLD~IeteG~~~iR~~RK~~Vk~iQ~~l~~LD~k 92 (99)
T 1ugo_A 17 ISRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDIQQARKRAAQETERLLKELEQN 92 (99)
T ss_dssp HHHHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHcCcCcCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44688889999999999999988884322221 58888889999999876322 1222223343445566666664
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=47.71 E-value=57 Score=25.44 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEE 473 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~e 473 (490)
+.-....|+..+|.++.....+- ...|+-+.+=-.||..||.||..+.-.|.++..+-++
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777666655432 3456667777789999999999999999988877554
No 31
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=44.79 E-value=64 Score=27.40 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCch--------------HHHHHHHHHHhhHHHHH----------------HHHHHHH
Q 011229 412 IAVMKRMAELEDAVTILSAKPAAMLA--------------EKEEMLNAAVSRVDALE----------------QELMSTR 461 (490)
Q Consensus 412 ~~~~~Rl~~LE~k~~~l~~kp~~mp~--------------eKEe~L~~a~~Rv~~lE----------------~eL~~TK 461 (490)
++++-||..||..++.|..+-.++=. +.++|.+.--.|+.-|+ .++.+.+
T Consensus 5 ~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~ 84 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 45566666666666666655443322 23344444445555544 3678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 011229 462 RALEDSLARQEELLAFIDKKKKKK 485 (490)
Q Consensus 462 kaL~~~l~kQ~el~~~ie~~k~~k 485 (490)
|.|++.+.+|++++.+.|+.|.-+
T Consensus 85 keLd~~ik~qekiIdnFE~ik~lr 108 (119)
T 3etw_A 85 KKLEAEMEQQKAVISDFEKIQALR 108 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887544
No 32
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=44.08 E-value=56 Score=22.83 Aligned_cols=37 Identities=5% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 011229 62 EIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQM 106 (490)
Q Consensus 62 e~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~ 106 (490)
+.+.|.+|.+.- ..+|...-..||.+++||++.|...
T Consensus 5 ~de~ia~F~~iT--------G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACT--------GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHH--------CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 456788888753 2345356788999999999999753
No 33
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.43 E-value=19 Score=24.83 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 011229 414 VMKRMAELEDAVTILS 429 (490)
Q Consensus 414 ~~~Rl~~LE~k~~~l~ 429 (490)
+=.|.+|||+++.+|+
T Consensus 15 le~~naeLEervstLq 30 (42)
T 2oqq_A 15 LENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555554
No 34
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=43.39 E-value=33 Score=22.52 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 011229 87 HMMLRFLKARKFDIEKTKQMW 107 (490)
Q Consensus 87 ~~LLRFLrArkfdvekA~~~l 107 (490)
....+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 456889999999999998754
No 35
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.70 E-value=69 Score=23.08 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011229 64 KAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDM 110 (490)
Q Consensus 64 ~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~ 110 (490)
..|++|++. -..|.+..++-|++.++|+++|.+.|-..
T Consensus 11 ~~l~~L~~M---------GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM---------GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH---------TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc---------CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345666654 23343456899999999999999887643
No 36
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=41.11 E-value=29 Score=25.71 Aligned_cols=38 Identities=13% Similarity=0.282 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 64 KAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 64 ~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
+.+++|++. .|. .+. ..+..-|+++++|++.|..+|-+
T Consensus 11 e~l~~L~em------FP~-ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDM------FPN-MDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHH------CSS-SCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHH------CCC-CCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 555666654 453 344 57999999999999999998864
No 37
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=40.22 E-value=50 Score=27.71 Aligned_cols=68 Identities=24% Similarity=0.410 Sum_probs=50.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCchHH-----HHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 011229 408 GAEYIAVMKRMAELEDAVTILSAKPAAMLAEK-----EEMLNAAVSRVDALEQE----LMSTRRALEDSLARQEELLAFI 478 (490)
Q Consensus 408 ~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eK-----Ee~L~~a~~Rv~~lE~e----L~~TKkaL~~~l~kQ~el~~~i 478 (490)
-..+..+...+.+|+..|+....++ .|| +|||.--+=++|++|.| +-..+|+ ++-+=.-++++|
T Consensus 29 ~~~I~~I~~eV~~L~~qV~~f~g~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~aRK~---aVk~iQ~~l~~L 101 (111)
T 1uk5_A 29 VLKVEAILEKVQGLEQAVDSFEGKK----TDKKYLMIEEYLTKELLALDSVDPEGRADVRQARRD---GVRKVQTILEKL 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCS----SSHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc----chHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHH---HHHHHHHHHHHH
Confidence 4568888999999999999998876 566 47899999999999887 4445544 344445567777
Q ss_pred HHHh
Q 011229 479 DKKK 482 (490)
Q Consensus 479 e~~k 482 (490)
|.+.
T Consensus 102 D~k~ 105 (111)
T 1uk5_A 102 EQKA 105 (111)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7653
No 38
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=37.65 E-value=69 Score=23.54 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=21.2
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 84 DDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 84 dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
.|.+..++-|++.++|+++|.+.|-.
T Consensus 30 ~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 30 FDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34456789999999999999988754
No 39
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.30 E-value=1e+02 Score=30.39 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCCCCCch-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 011229 419 AELEDAVTILSAKPAAMLA-----EKEEMLNAAVSRVDALEQELMSTRRALEDSLAR-QEELLAFIDKKKK 483 (490)
Q Consensus 419 ~~LE~k~~~l~~kp~~mp~-----eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~k-Q~el~~~ie~~k~ 483 (490)
+++++-+..+.-..-.+|. .=.+.|..--.|+..|+.+|..+++.|.+-+.+ ...|.++.+....
T Consensus 199 ~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~ 269 (357)
T 3rrk_A 199 EAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKD 269 (357)
T ss_dssp HHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888885 335788888899999999999999999998888 6777766666543
No 40
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.00 E-value=2.2e+02 Score=24.90 Aligned_cols=69 Identities=16% Similarity=0.399 Sum_probs=53.1
Q ss_pred CchhhHHHHHHHH--------HHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 406 IYGAEYIAVMKRM--------AELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAF 477 (490)
Q Consensus 406 ~~~~~~~~~~~Rl--------~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ 477 (490)
.+.+.|..-+++| +..|.-++.| |..=-.|.|+ ..||+.||.|+...-+-|.+++.+=++|++-
T Consensus 50 ~~~~~f~~~~~ela~dli~kakqIe~LIdsL---Pg~~~seeeQ-----~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 50 VPPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTSSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777 6777777776 3333355554 5899999999999999999999999999998
Q ss_pred HHHHh
Q 011229 478 IDKKK 482 (490)
Q Consensus 478 ie~~k 482 (490)
|+..-
T Consensus 122 v~~~l 126 (151)
T 1yke_B 122 VDSLI 126 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 41
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.23 E-value=78 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=20.6
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 011229 84 DDYHMMLRFLKARKFDIEKTKQMWS 108 (490)
Q Consensus 84 dD~~~LLRFLrArkfdvekA~~~l~ 108 (490)
.|.+..++-|++.++|+++|++.|-
T Consensus 42 ~dr~~~~~AL~~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 42 ANRDANLQALVATDGDIHAAIEMLL 66 (74)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3435678999999999999998774
No 42
>1m7k_A Silencer of death domains; three helix bundle, chaperone; NMR {Homo sapiens} SCOP: a.7.7.1
Probab=34.34 E-value=67 Score=26.36 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=48.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccCCCCCchHH-----HHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 011229 407 YGAEYIAVMKRMAELEDAVTILSAKPAAMLAEK-----EEMLNAAVSRVDALEQE----LMSTRRALEDSLARQEELLAF 477 (490)
Q Consensus 407 ~~~~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eK-----Ee~L~~a~~Rv~~lE~e----L~~TKkaL~~~l~kQ~el~~~ 477 (490)
.-.-+..+...+.+|+..|+.+..++ .|| +|||.--+=.+|++|.| +-..+|++ +-+=.-++++
T Consensus 22 ~~~kI~~I~~ev~~L~~~V~~f~G~k----~dkey~~L~E~L~k~LLkLD~IeteG~~~vR~~RK~~---Vk~iQ~~l~~ 94 (99)
T 1m7k_A 22 SIKKIIHVLEKVQYLEQEVEEFVGKK----TDKAYWLLEEMLTKELLELDSVETGGQDSVRQARKEA---VCKIQAILEK 94 (99)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCSCT----TSHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc----hHHHHHHHHHHHHHHHHHHCCcCcCCcHHHHHHHHHH---HHHHHHHHHH
Confidence 34458899999999999999999875 556 47888899999999887 54555543 3333445566
Q ss_pred HHH
Q 011229 478 IDK 480 (490)
Q Consensus 478 ie~ 480 (490)
||.
T Consensus 95 LD~ 97 (99)
T 1m7k_A 95 LEK 97 (99)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 43
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=34.30 E-value=75 Score=22.07 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 011229 84 DDYHMMLRFLKARKFDIEKTKQMWS 108 (490)
Q Consensus 84 dD~~~LLRFLrArkfdvekA~~~l~ 108 (490)
.|....++=|++.++|+++|.+.|-
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3435678999999999999998763
No 44
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.73 E-value=1.1e+02 Score=23.63 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 59 DAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 59 ~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
.++-...|.++++. +|+ ..+ .++.+.|..++.|+|.+...|-+
T Consensus 10 ~~~l~s~I~qV~DL------fPd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDL------LPD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHH------CCS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH------ccc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 45556677777765 565 344 58999999999999999988744
No 45
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=33.53 E-value=31 Score=23.63 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=17.4
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 011229 444 NAAVSRVDALEQELMSTRRA 463 (490)
Q Consensus 444 ~~a~~Rv~~lE~eL~~TKka 463 (490)
.+|++|.+.+|+++-.++|.
T Consensus 20 d~A~drAe~~E~~~k~~~~~ 39 (40)
T 2z5i_I 20 ENALDRAEQLENEVARLKKL 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhhcc
Confidence 37899999999999998873
No 46
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.11 E-value=1.2e+02 Score=22.26 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 011229 57 VHDAEEIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSDMLQ 112 (490)
Q Consensus 57 ~~~~ee~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~l~ 112 (490)
++++++++.|.+|.+.-. .+- .+-.++|...+||.++|.+.+.+...
T Consensus 2 ~ls~~q~~mv~~~s~~Tg--------mn~-~~s~~cL~~~~Wd~~~A~~~F~~l~~ 48 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQSG--------MNL-EWSQKCLQDNNWDYTRSAQAFTHLKA 48 (59)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456788888888887632 222 57889999999999999998876543
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.81 E-value=1.1e+02 Score=24.93 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 414 VMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEE 473 (490)
Q Consensus 414 ~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~e 473 (490)
.+.|...+|.++..+..+- ..+|+=+.+=-.|+..||.||..+...|.++..+-++
T Consensus 21 a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666554442 2466666666688999999999988888888665444
No 48
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.07 E-value=72 Score=24.69 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011229 415 MKRMAELEDAVTILSAKPAAML---AEKEEMLNAAVSRVDALEQELMSTRR 462 (490)
Q Consensus 415 ~~Rl~~LE~k~~~l~~kp~~mp---~eKEe~L~~a~~Rv~~lE~eL~~TKk 462 (490)
=+|...|=+.+..|.+--|.+| ..|-.+|..|++=|+.|+.++..-+.
T Consensus 21 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 21 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777765544333 47999999999999999987765443
No 49
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=29.01 E-value=66 Score=23.74 Aligned_cols=43 Identities=28% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhccCCCCCch----HHHHHHHHHHhhHHHHHHHHH
Q 011229 416 KRMAELEDAVTILSAKPAAMLA----EKEEMLNAAVSRVDALEQELM 458 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~kp~~mp~----eKEe~L~~a~~Rv~~lE~eL~ 458 (490)
+|+.+|-+-++.|..--|.+|+ -|=+.|..|++=|..|+.-|.
T Consensus 12 ~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 12 NRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999988777775 588999999999999987664
No 50
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.91 E-value=73 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHHHhccCCCCC--chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 011229 421 LEDAVTILSAKPAAM--LAEKEEMLNAAVSRVDALEQELMSTRRALEDS 467 (490)
Q Consensus 421 LE~k~~~l~~kp~~m--p~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~ 467 (490)
|+.+.++....|. | |.--|.-|+.+-.+|+.|+++|-+-...|.++
T Consensus 41 l~Km~~vY~~nP~-~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 41 LKKMKDVYEKTPQ-MGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHCGG-GCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665 6 77779999999999999999999988888876
No 51
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.45 E-value=1.2e+02 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011229 62 EIKAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWS 108 (490)
Q Consensus 62 e~~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~ 108 (490)
....|.++|+.- -.+|..+|.--|.|.+.|+..|+.+|.
T Consensus 24 ~q~lLnQLrEIT--------GiqD~~~L~~ALkas~Gdl~~AV~~LT 62 (80)
T 1vdl_A 24 QQTFLNQLREIT--------GINDAQILQQALKDSNGNLELAVAFLT 62 (80)
T ss_dssp HHHHHHHHHHHS--------CCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHhccCCHHHHHHHHh
Confidence 455788888863 357878899999999999999998874
No 52
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.17 E-value=2.8e+02 Score=23.61 Aligned_cols=68 Identities=15% Similarity=0.412 Sum_probs=52.1
Q ss_pred CchhhHHHHHHHH--------HHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 406 IYGAEYIAVMKRM--------AELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAF 477 (490)
Q Consensus 406 ~~~~~~~~~~~Rl--------~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ 477 (490)
.+.+.|..-+++| +..|.-++.| |..=-.|.|+ ..||+.||.|+...-+-|.+++.+=+++++-
T Consensus 50 ~~~~~f~~~~~ela~dli~k~kqIe~LIdsL---P~~~~see~Q-----~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 50 VPPEEFSNTIDELSTDIILKTRQINKLIDSL---PGVDVSAEEQ-----LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 121 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTTCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777776 6777777776 3333345554 5899999999999999999999999999998
Q ss_pred HHHH
Q 011229 478 IDKK 481 (490)
Q Consensus 478 ie~~ 481 (490)
|+..
T Consensus 122 v~~~ 125 (132)
T 1ykh_B 122 VDSM 125 (132)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 53
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=27.19 E-value=82 Score=25.75 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCchH----HHHHHHHHHhhHHHHHHHHHH
Q 011229 415 MKRMAELEDAVTILSAKPAAMLAE----KEEMLNAAVSRVDALEQELMS 459 (490)
Q Consensus 415 ~~Rl~~LE~k~~~l~~kp~~mp~e----KEe~L~~a~~Rv~~lE~eL~~ 459 (490)
..||..|-+-++.|...-+.+|++ |=|.|..|++-|..|..-|..
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 459999999999999998888887 889999999999999887754
No 54
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=26.61 E-value=54 Score=23.69 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 011229 87 HMMLRFLKARKFDIEKTKQMWS 108 (490)
Q Consensus 87 ~~LLRFLrArkfdvekA~~~l~ 108 (490)
.+|-|.|.+.++|+.+|.+.+.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 5899999999999999998764
No 55
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=26.05 E-value=1.2e+02 Score=24.06 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 64 KAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 64 ~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
..++++|..|.. ...| ..|.+-.-..+||+++|...+-+
T Consensus 36 SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 36 SCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHh
Confidence 356788887632 2334 56888888999999999988754
No 56
>3hf0_A GCN4-PLI SIDE chain sequence on AN (alpha-alpha- beta-alpha-beta-alpha-beta) backbone...; helix bundle, foldamer, alpha/beta-peptide, coiled coil; HET: BIL XCP B3Y XPC 16A; 2.10A {Synthetic}
Probab=25.33 E-value=1.3e+02 Score=18.99 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 011229 439 KEEMLNAAVSRVDALEQELMSTRRALED 466 (490)
Q Consensus 439 KEe~L~~a~~Rv~~lE~eL~~TKkaL~~ 466 (490)
.|.-|.+.+....-.|.||...|..|.+
T Consensus 6 ~e~kl~e~l~kl~h~e~el~r~k~ll~e 33 (34)
T 3hf0_A 6 XEXKLXEXLXKLXHXEXELXRXKXLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 3566778888899999999999988865
No 57
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=24.97 E-value=74 Score=22.64 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011229 79 LPSRHDDYHMMLRFLKARKFDIEKTKQMWSDM 110 (490)
Q Consensus 79 LP~~~dD~~~LLRFLrArkfdvekA~~~l~~~ 110 (490)
.|.. +...+.+-|+++++|+++|.++|-+.
T Consensus 15 FP~~--~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 15 FPAI--SKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp CSSS--CHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCC--CHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4543 33578999999999999999998765
No 58
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=24.65 E-value=37 Score=22.26 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 011229 412 IAVMKRMAELEDAVTILSAK 431 (490)
Q Consensus 412 ~~~~~Rl~~LE~k~~~l~~k 431 (490)
.+++-||-.+|++|..+..|
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~K 25 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHK 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 57888999999999887665
No 59
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.29 E-value=2.4e+02 Score=21.64 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHH
Q 011229 413 AVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTR 461 (490)
Q Consensus 413 ~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TK 461 (490)
.+.+||+++|.+=..|. .||..||.+|+.++
T Consensus 4 ~~~~kLq~~E~~N~~Le------------------~~v~~le~~Le~s~ 34 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLE------------------GQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHH------------------HHHHHHHHHHHHHH
Confidence 56778888887766653 36777777777765
No 60
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.08 E-value=2.4e+02 Score=21.83 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHH
Q 011229 437 AEKEEMLNAAVSRVDALEQELMS 459 (490)
Q Consensus 437 ~eKEe~L~~a~~Rv~~lE~eL~~ 459 (490)
.+|-.+|..|++=|+.|+.+...
T Consensus 39 ~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 39 LNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999877664
No 61
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.68 E-value=54 Score=22.33 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=15.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhccC
Q 011229 406 IYGAEYIAVMKRMAELEDAVTILSAK 431 (490)
Q Consensus 406 ~~~~~~~~~~~Rl~~LE~k~~~l~~k 431 (490)
++.+++.+.-.-|+-||+|...|.+|
T Consensus 17 fspeelaaleselqalekklaalksk 42 (48)
T 1g6u_A 17 FSPEELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666544
No 62
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=22.81 E-value=2.6e+02 Score=22.49 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 410 EYIAVMKRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEE 473 (490)
Q Consensus 410 ~~~~~~~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~e 473 (490)
.+.-+=+-+.+||..+..++ +|+.+-| +-|-.++.++...==.|.+.=-.||+.+.+|.|
T Consensus 20 rL~~Yr~~IeelE~~L~s~s-~~~~~Tp---q~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 20 QLQQYRQQIEELENHLATQA-NNSHITP---QDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHSCHH-HHTTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666788888888866 6666654 445555555555444455555555555555544
No 63
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=22.51 E-value=1.1e+02 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=21.5
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011229 84 DDYHMMLRFLKARKFDIEKTKQMWSD 109 (490)
Q Consensus 84 dD~~~LLRFLrArkfdvekA~~~l~~ 109 (490)
.|....++=|++.++|+++|++.|-.
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34457889999999999999998754
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.40 E-value=2.8e+02 Score=26.01 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 011229 416 KRMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLA 469 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~ 469 (490)
+|++.||+.+..+..+= .++++-+.++-.++..++.+|..-+..+.+.+.
T Consensus 104 ~~i~~lE~eile~~e~i----e~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 104 ERSNQANREIENLQNEI----KRKSEKQEDLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443331 234455555566666666666666666666554
No 65
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=22.31 E-value=1.4e+02 Score=27.17 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=12.9
Q ss_pred CCchHHHHHHHHHHhhHHHHHHHHH
Q 011229 434 AMLAEKEEMLNAAVSRVDALEQELM 458 (490)
Q Consensus 434 ~mp~eKEe~L~~a~~Rv~~lE~eL~ 458 (490)
++||=.++++...+.+|+.+++++.
T Consensus 20 ~L~py~~dlv~~v~~ei~~~~~~~~ 44 (196)
T 2q9q_C 20 QLPAFNEDGLRQVLEEMKALYEQNQ 44 (196)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555444
No 66
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=22.22 E-value=2.5e+02 Score=32.27 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHhc------cCCCCCchHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 415 MKRMAELEDAVTILS------AKPAAMLAEK--EEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFI 478 (490)
Q Consensus 415 ~~Rl~~LE~k~~~l~------~kp~~mp~eK--Ee~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~i 478 (490)
.+--++||..+..|+ +.|+-+|++- -+-|+.++.+....|+| .-.+|.+.+.||+.|..-.
T Consensus 820 ~~ek~~Le~l~~~iqtklrl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~e---Re~~L~~el~Rqe~L~~L~ 888 (1010)
T 1g8x_A 820 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE---HAEALRIELKRQKKIAVLL 888 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 334455665555554 4566677751 24588888776666665 4479999999998876433
No 67
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.67 E-value=1.8e+02 Score=21.68 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011229 64 KAVDALRQALILEELLPSRHDDYHMMLRFLKARKFDIEKTKQMW 107 (490)
Q Consensus 64 ~al~~fRq~L~~~~~LP~~~dD~~~LLRFLrArkfdvekA~~~l 107 (490)
+.|.+|...-. .+...-..||.+.+||++.|+..+
T Consensus 19 ~~i~qF~~iTg---------~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 19 VMINQFVLAAG---------CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHHHHHHC---------CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 67888886531 233568899999999999998776
No 68
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.30 E-value=1.5e+02 Score=20.42 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 439 KEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLA 476 (490)
Q Consensus 439 KEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~ 476 (490)
|||||+. ++||| .|.++|++=+.+-=.||.||-+
T Consensus 4 k~~l~qk-I~kVd---rEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 4 KEELIQN-MDRVD---REITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp SSHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677653 55555 6888888888887788887765
No 69
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.27 E-value=3e+02 Score=21.52 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhccC---CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011229 409 AEYIAVMKRMAELEDAVTILSAK---PAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLA 476 (490)
Q Consensus 409 ~~~~~~~~Rl~~LE~k~~~l~~k---p~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~ 476 (490)
-++..+=.+|..||.++..|..+ |.--. ....++..|=++|...+..|.++..|=+||-+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~--------~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~ 84 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFS--------QPHEQTQKVLADMAAAEQELEQAFERWEYLEA 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888899999988888754 22100 01234555556666666667777777766643
No 70
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=21.22 E-value=89 Score=25.90 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011229 448 SRVDALEQELMSTRRALEDSLARQEELLAFIDKKKK 483 (490)
Q Consensus 448 ~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~ 483 (490)
-||-+|.-||--|||.|+.|-..--|--|-|.++-+
T Consensus 95 iritslqgdltftkkclenarsqisekdakinklme 130 (142)
T 1pl5_A 95 IRITSLQGDLTFTKKCLENARSQISEKDAKINKLME 130 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 489999999999999999987766666666655443
No 71
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=21.12 E-value=43 Score=32.67 Aligned_cols=31 Identities=19% Similarity=0.040 Sum_probs=23.2
Q ss_pred CccccceEEEEecChhhHHHHHHHhhcCChh
Q 011229 237 YPETLNRMFIINAGSGFRMLWNTIKSFLDPK 267 (490)
Q Consensus 237 YPerL~~i~IINaP~~f~~lw~iVKpfL~~k 267 (490)
+...=..|+|||+||.+.--..-+-|+|.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHH
Confidence 3444567999999999988777777766553
No 72
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.74 E-value=1.2e+02 Score=21.86 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q 011229 418 MAELEDAVTIL 428 (490)
Q Consensus 418 l~~LE~k~~~l 428 (490)
..-||+||..|
T Consensus 4 vkaleekvkal 14 (67)
T 1lq7_A 4 VKALEEKVKAL 14 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 33444444444
No 73
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=20.64 E-value=1.3e+02 Score=22.71 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhccCCCCCch---HHHHHHHHHHhhHHHHHHHH
Q 011229 416 KRMAELEDAVTILSAKPAAMLA---EKEEMLNAAVSRVDALEQEL 457 (490)
Q Consensus 416 ~Rl~~LE~k~~~l~~kp~~mp~---eKEe~L~~a~~Rv~~lE~eL 457 (490)
+|+..|-+-++.|..--|..|. -|=+.|..|++=|..|+.-|
T Consensus 22 ~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 22 RRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888766553 37899999999999988754
No 74
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.60 E-value=3.7e+02 Score=22.32 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011229 417 RMAELEDAVTILSAKPAAMLAEKEEMLNAAVSRVDALEQELMSTRRALEDSLARQEELLAFIDKKKK 483 (490)
Q Consensus 417 Rl~~LE~k~~~l~~kp~~mp~eKEe~L~~a~~Rv~~lE~eL~~TKkaL~~~l~kQ~el~~~ie~~k~ 483 (490)
-+.++..-++.+..| +|.|-- .=.++|.|+...||.|.++-+...+|-.-|+.+++
T Consensus 42 eldn~~~~~edfk~K-----yE~E~~------~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 42 ERDNLAEDIMRLREK-----LQEEML------QREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----hHHHHH------HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 345555555555555 444433 33567999999999999999999999888888774
Done!