Citrus Sinensis ID: 011230

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEELGLNDIDTSSADAAYNSTS

cccccccccccccccccccccccccccEEEEccccccccccEEEEEEEccccccEEEEEEEEcccccccccccEEcccccccEEEEEEEEEcccccccccEEEEcccEEEEEccccEEEcccccccccEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEccccccccccEEEEEccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccEEEEEEEccccccccEEEEEccEEEEEccccEEEcccccccEEEcHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccEEEEEEccHHHHHHHcccccccccccccccccc

cccccccccccccccccccccccccccEEEccccccccccccEEEEEEEcccHEEEEEEEEEccccccccccEccccccccccEEEEEEEEcccHHHccHHEEEcccEEEEEcEEEEEccccccccEEccHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEccccccccccccEEEEEcccHHHHHHHccccccccccccHccccHcccccccccccccccccccccccccccccccccccccHHHcccccEEEEccccccccccccEEEEEEEccccEEEEEEEEEccccccccccEcccccccccccEEEEEEccHHHHcHHHEEccccEEEEcEEEEEEcccccccEEccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEcccccccccccccEEEEEEccHHHHHHHcccccccccccHcccccc

MENNKEEIVDVGSVVEavsaddsdaplyQVESLCMRCGENGVTRFLLTLIPHFRKVLLSafecphcgernnevqfageiqprgcnyslkvpssdqkmfhrqvvksesatikipeldfeippeaqrgslstVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRAcakgdstftfilddpagnsfienlyapspdpslnikfyertPEQQALLGylvdpsqqgessnvvpseglsstsdkreprgsvgavaghraiaqSNSAEIADALFrysapeevmtfpstcgacaasCETRMFMTRIPYFQEVIVMASTcdacgyrnselkpggripekgkRITLFVKNINDLSRDliksdtagvkipeldlelaggtlggIVTTVEGLITKISESLervhgfsfgdsldenkrTKWQDFKAKLNKLLSVEESWTLILDDalansfiapvtddikddhQLTFEEYERSWEQNeelglndidtssadaaynsts

mennkeeiVDVGSVveavsaddsdaPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKsesatikipeldfeippeaqrgslstVEGILVRAADELEALQEerkkldpqtAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVpseglsstsdkrepRGSVGAVAGhraiaqsnsaEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRnselkpggripekgkRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFsfgdsldenkrTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNeelglndidtssadaaynsts

************SVVEAV*****DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLK*****************************************VEGILVRA*******************EAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAP****SLNIKFYERT**QQALLGYLV**************************************************LFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEY****************************

**************************LYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEE****DPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLV****************************************************RYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVH**************KWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTD*IKDDHQLTFEEYERSWEQNEELGLNDI*************

********VDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPS****************************AVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEELGLNDIDTSSADAAYNSTS

************************APLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLV************************************************DALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERV*******SLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEELGLNDIDTSS*********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MENNKEEIVDVGSVVEAVSADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSxxxxxxxxxxxxxxxxxxxxxRKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEELGLNDIDTSSADAAYNSTS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		490	2.2.26 [Sep-21-2011]
P53303		486	Zinc finger protein ZPR1	yes	no	0.881	0.888	0.432	4e-96
Q62384		459	Zinc finger protein ZPR1	yes	no	0.871	0.930	0.387	7e-92
Q55E13		477	Zinc finger protein ZPR1	yes	no	0.842	0.865	0.418	1e-90
A9CB27		459	Zinc finger protein ZPR1	N/A	no	0.863	0.921	0.386	4e-90
O75312		459	Zinc finger protein ZPR1	yes	no	0.857	0.915	0.378	6e-90
Q2TBX0		459	Zinc finger protein ZPR1	yes	no	0.857	0.915	0.382	1e-89
O13724		459	Zinc finger protein zpr1	yes	no	0.891	0.952	0.413	2e-89
O16999		455	Zinc finger protein ZPR1	yes	no	0.881	0.949	0.365	3e-81
O58960		223	Uncharacterized ZPR1-like	yes	no	0.308	0.677	0.333	2e-11
Q57950		198	Uncharacterized ZPR1-like	yes	no	0.273	0.676	0.307	3e-10

>sp\|P53303\|ZPR1_YEAST Zinc finger protein ZPR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZPR1 PE=1 SV=1	Back alignment and function desciption

 Score =  352 bits (903), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/458 (43%), Positives = 284/458 (62%), Gaps = 26/458 (5%)

Query: 26  PLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCN 85
           P+ ++ESLCM CG+NG TR LLT IP+FR++++ +F+CPHCG +N E+Q A +IQ +G  
Sbjct: 46  PVQEIESLCMNCGKNGTTRLLLTSIPYFREIIIMSFDCPHCGFKNCEIQPASQIQEKGSR 105

Query: 86  YSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEAL 145
           Y LKV   +   F+RQV+KSE+AT K  ELD EIP  A+RG L+TVEG+L    D+L   
Sbjct: 106 YVLKVECRED--FNRQVIKSETATCKFVELDIEIP--AKRGQLTTVEGLLSEMIDDLSQD 161

Query: 146 QEERKKLDPQTAEAIDQFLLKLRA---CAKGDSTFTFILDDPAGNSFIENLYAPS-PDPS 201
           QE RK +D    + ID F+ K+++   C       TFILDDPAGNS+IE  Y P  P   
Sbjct: 162 QEMRKSIDEALYKKIDDFIQKVKSYINCEPNTIPITFILDDPAGNSWIE--YKPGEPQHK 219

Query: 202 LNIKFYERTPEQQALLGYLV-DPSQQGESSNVVPSEGLSSTSDK-REPRGSVGAVAGHRA 259
            +   Y RT EQ   +G +  D  +Q         E L   +++ R P  SV        
Sbjct: 220 WSHTQYVRTDEQNVQVGIITRDQLEQRRQ------EQLKQLANRERNPSESV-------K 266

Query: 260 IAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDA 319
           +  +N   ++DA    +   EV TF ++C +C   CET M    IP+F+EVI+M++ CD 
Sbjct: 267 VGSANPQFLSDATDIENFNNEVQTFRASCPSCTQECETHMKPVNIPHFKEVIIMSTVCDH 326

Query: 320 CGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGI 379
           CGY+++E+K GG IP+KG+RITL+  +  DLSRD++KS+T  + IPEL L++  GTLGG 
Sbjct: 327 CGYKSNEVKTGGAIPDKGRRITLYCDDAADLSRDILKSETCSMVIPELHLDIQEGTLGGR 386

Query: 380 VTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDAL 439
            TT+EGL+ ++ E LE        DS+DE  + +W +F AKL + ++ +  +T+I++D L
Sbjct: 387 FTTLEGLLRQVYEELESRIFTQTSDSMDEATKARWVEFFAKLKEAIAGKVKFTVIMEDPL 446

Query: 440 ANSFIAPVTDDIKDDHQLTFEEYERSWEQNEELGLNDI 477
           A S+I  V      D  +T E+YER+ EQNE+LGL+DI
Sbjct: 447 AGSYIQNVYAP-DPDPNMTIEDYERTKEQNEDLGLSDI 483

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp\|Q62384\|ZPR1_MOUSE Zinc finger protein ZPR1 OS=Mus musculus GN=Znf259 PE=1 SV=1	Back alignment and function description

>sp\|Q55E13\|ZPR1_DICDI Zinc finger protein ZPR1 homolog OS=Dictyostelium discoideum GN=zpr1 PE=3 SV=1	Back alignment and function description

>sp\|A9CB27\|ZPR1_PAPAN Zinc finger protein ZPR1 OS=Papio anubis GN=ZNF259 PE=3 SV=1	Back alignment and function description

>sp\|O75312\|ZPR1_HUMAN Zinc finger protein ZPR1 OS=Homo sapiens GN=ZNF259 PE=1 SV=1	Back alignment and function description

>sp\|Q2TBX0\|ZPR1_BOVIN Zinc finger protein ZPR1 OS=Bos taurus GN=ZNF259 PE=2 SV=1	Back alignment and function description

>sp\|O13724\|ZPR1_SCHPO Zinc finger protein zpr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zpr1 PE=3 SV=1	Back alignment and function description

>sp\|O16999\|ZPR1_CAEEL Zinc finger protein ZPR1 homolog OS=Caenorhabditis elegans GN=W03F9.1 PE=3 SV=2	Back alignment and function description

>sp\|O58960\|Y1223_PYRHO Uncharacterized ZPR1-like protein PH1223 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1223 PE=3 SV=1	Back alignment and function description

>sp\|Q57950\|Y530_METJA Uncharacterized ZPR1-like protein MJ0530 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0530 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		490
255575202		505	zinc finger protein, putative [Ricinus c	0.997	0.968	0.838	0.0
224077448		506	predicted protein [Populus trichocarpa]	0.991	0.960	0.835	0.0
356576557		495	PREDICTED: zinc finger protein ZPR1-like	1.0	0.989	0.816	0.0
356521586		498	PREDICTED: zinc finger protein ZPR1-like	1.0	0.983	0.815	0.0
356576559		508	PREDICTED: zinc finger protein ZPR1-like	1.0	0.964	0.795	0.0
225423682		489	PREDICTED: zinc finger protein ZPR1 homo	0.993	0.995	0.801	0.0
356521588		507	PREDICTED: zinc finger protein ZPR1-like	1.0	0.966	0.792	0.0
449455481		508	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.985	0.950	0.804	0.0
297805264		493	zinc finger (ZPR1-type) family protein [	0.989	0.983	0.799	0.0
42568162		493	ZPR1 zinc-finger domain protein [Arabido	0.991	0.985	0.8	0.0

>gi\|255575202\|ref\|XP_002528505.1\| zinc finger protein, putative [Ricinus communis] gi\|223532065\|gb\|EEF33874.1\| zinc finger protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/495 (83%), Positives = 450/495 (90%), Gaps = 6/495 (1%)

Query: 1   MENN--KEEIVDVGSVVEAVSADDSD---APLYQVESLCMRCGENGVTRFLLTLIPHFRK 55
           MENN  KE+IVDV SVV+A+S DD +   APLYQVESLCMRCGENG+TR LLTLIPHFRK
Sbjct: 1   MENNSNKEQIVDVRSVVDAISNDDDNDNDAPLYQVESLCMRCGENGITRLLLTLIPHFRK 60

Query: 56  VLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPEL 115
           +LLSAFECPHCGERNNEVQFAGEIQPRGC+Y L++PS +QKM +RQVVKSESATIKIPEL
Sbjct: 61  ILLSAFECPHCGERNNEVQFAGEIQPRGCSYHLEIPSGNQKMLNRQVVKSESATIKIPEL 120

Query: 116 DFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDS 175
           DFEIPPEAQRGSLSTVEG LVRAADEL+ALQEERKK+DP+TAEAIDQFLL+LR+CA GDS
Sbjct: 121 DFEIPPEAQRGSLSTVEGTLVRAADELQALQEERKKVDPKTAEAIDQFLLRLRSCATGDS 180

Query: 176 TFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPS 235
           +FTFILDDPAGNSFIEN +APS DPSL+IKFYERTPEQQ  LGYL DPSQ GE+    PS
Sbjct: 181 SFTFILDDPAGNSFIENPFAPSSDPSLSIKFYERTPEQQVALGYLADPSQLGEAGESQPS 240

Query: 236 EGLSSTSDK-REPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAAS 294
           E   + S + REP GSVGAVAGHR IAQSNSAEIA+ALFRYSAPEEVMTFPSTCGAC + 
Sbjct: 241 ESTGTVSGQIREPHGSVGAVAGHRTIAQSNSAEIAEALFRYSAPEEVMTFPSTCGACTSR 300

Query: 295 CETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDL 354
           CETRMF+T IPYFQEVIVMASTCD+CGYRNSELKPGGRIPEKGKRITL V+NI DLSRD+
Sbjct: 301 CETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRIPEKGKRITLHVENIKDLSRDV 360

Query: 355 IKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKW 414
           IKSDTAGVK+PEL+LELA GTLGG+VTTVEGLITKISESLERVHGF+FGDSLD  KR+KW
Sbjct: 361 IKSDTAGVKVPELELELASGTLGGVVTTVEGLITKISESLERVHGFTFGDSLDNYKRSKW 420

Query: 415 QDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEELGL 474
           QDFKAKLNKLLS+EE W LILDDALANSFIAP TDD+KDD QL FEEYERSWEQNEELGL
Sbjct: 421 QDFKAKLNKLLSLEEPWILILDDALANSFIAPATDDMKDDKQLLFEEYERSWEQNEELGL 480

Query: 475 NDIDTSSADAAYNST 489
           NDIDTSSADAAYNST
Sbjct: 481 NDIDTSSADAAYNST 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224077448\|ref\|XP_002305256.1\| predicted protein [Populus trichocarpa] gi\|222848220\|gb\|EEE85767.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356576557\|ref\|XP_003556397.1\| PREDICTED: zinc finger protein ZPR1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356521586\|ref\|XP_003529435.1\| PREDICTED: zinc finger protein ZPR1-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|356576559\|ref\|XP_003556398.1\| PREDICTED: zinc finger protein ZPR1-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|225423682\|ref\|XP_002277005.1\| PREDICTED: zinc finger protein ZPR1 homolog isoform 1 [Vitis vinifera] gi\|297737977\|emb\|CBI27178.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356521588\|ref\|XP_003529436.1\| PREDICTED: zinc finger protein ZPR1-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|449455481\|ref\|XP_004145481.1\| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein ZPR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297805264\|ref\|XP_002870516.1\| zinc finger (ZPR1-type) family protein [Arabidopsis lyrata subsp. lyrata] gi\|297316352\|gb\|EFH46775.1\| zinc finger (ZPR1-type) family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|42568162\|ref\|NP_198550.3\| ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gi\|334188048\|ref\|NP_001190429.1\| ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gi\|145651788\|gb\|ABP88119.1\| At5g37340 [Arabidopsis thaliana] gi\|332006783\|gb\|AED94166.1\| ZPR1 zinc-finger domain protein [Arabidopsis thaliana] gi\|332006785\|gb\|AED94168.1\| ZPR1 zinc-finger domain protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		490
TAIR\|locus:2171142		493	AT5G22480 [Arabidopsis thalian	0.991	0.985	0.797	8.3e-209
TAIR\|locus:2169130		498	AT5G37340 [Arabidopsis thalian	0.991	0.975	0.783	3.8e-204
CGD\|CAL0004036		509	ZPR1 [Candida albicans (taxid:	0.946	0.911	0.427	1.1e-96
UNIPROTKB\|Q5A934		509	ZPR1 "Likely ZPR1 zinc finger	0.946	0.911	0.427	1.1e-96
RGD\|1562173		459	Zfp259 "zinc finger protein 25	0.451	0.481	0.459	6.2e-93
MGI\|MGI:1330262		459	Zfp259 "zinc finger protein 25	0.446	0.477	0.459	2.7e-92
SGD\|S000003443		486	ZPR1 "Essential protein with t	0.906	0.913	0.428	2.7e-91
UNIPROTKB\|F1PB28		460	ZNF259 "Uncharacterized protei	0.434	0.463	0.470	1.7e-90
UNIPROTKB\|O75312		459	ZNF259 "Zinc finger protein ZP	0.434	0.464	0.458	2.1e-90
UNIPROTKB\|Q2TBX0		459	ZNF259 "Zinc finger protein ZP	0.446	0.477	0.454	4.4e-90

TAIR\|locus:2171142 AT5G22480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2019 (715.8 bits), Expect = 8.3e-209, P = 8.3e-209
 Identities = 391/490 (79%), Positives = 432/490 (88%)

Query:     1 MENNKEEIVDVGSVVEAVSADDS-DAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLS 59
             M+N  ++ +DV SVVEAVSAD S  APLY VES+CMRC ENG TRFLLTLIPHFRKVL+S
Sbjct:     1 MDNKNDQDIDVRSVVEAVSADLSFGAPLYVVESMCMRCQENGTTRFLLTLIPHFRKVLIS 60

Query:    60 AFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEI 119
             AFECPHCGERNNEVQFAGEIQPRGC Y+L+V + D K+F RQVVKSESATIKIPELDFEI
Sbjct:    61 AFECPHCGERNNEVQFAGEIQPRGCCYNLEVLAGDVKIFDRQVVKSESATIKIPELDFEI 120

Query:   120 PPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTF 179
             PPEAQRGSLSTVEGIL RAADEL ALQEERKK+DP+TAEAIDQFL KLRACAK +++FTF
Sbjct:   121 PPEAQRGSLSTVEGILARAADELSALQEERKKVDPKTAEAIDQFLSKLRACAKAETSFTF 180

Query:   180 ILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLS 239
             ILDDPAGNSFIEN +APSPDPSL IKFYERTPEQQA LGY+ +PSQ G+S     S G  
Sbjct:   181 ILDDPAGNSFIENPHAPSPDPSLTIKFYERTPEQQATLGYVANPSQAGQSEG---SLGAP 237

Query:   240 STSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRM 299
             ST     P G++GA AGHRAIAQSNS +I+D LFRYSAPEEVMTFPSTCGAC   CETRM
Sbjct:   238 STKTAYVPNGTIGATAGHRAIAQSNSTDISDNLFRYSAPEEVMTFPSTCGACTEPCETRM 297

Query:   300 FMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDT 359
             F+T+IPYFQEVIVMASTCD+CGYRNSELKPGG IPEKGK+ITL V+NI DLSRD+IKSDT
Sbjct:   298 FVTKIPYFQEVIVMASTCDSCGYRNSELKPGGAIPEKGKKITLSVRNITDLSRDVIKSDT 357

Query:   360 AGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKA 419
             AGV IPELDLELAGGTLGG+VTTVEGL+T+I ESL RVHGF+FGDS++E+K  KW++F A
Sbjct:   358 AGVIIPELDLELAGGTLGGMVTTVEGLVTQIRESLARVHGFTFGDSMEESKLNKWREFGA 417

Query:   420 KLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEELGLNDIDT 479
             +L KLLS E+ WTLILDD LANSFIAPVTDDIKDDHQLTFEEYERSW+QNEELGLNDIDT
Sbjct:   418 RLTKLLSFEQPWTLILDDELANSFIAPVTDDIKDDHQLTFEEYERSWDQNEELGLNDIDT 477

Query:   480 SSADAAYNST 489
             SSADAAY ST
Sbjct:   478 SSADAAYEST 487

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

TAIR\|locus:2169130 AT5G37340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

CGD\|CAL0004036 ZPR1 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5A934 ZPR1 "Likely ZPR1 zinc finger protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

RGD\|1562173 Zfp259 "zinc finger protein 259" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1330262 Zfp259 "zinc finger protein 259" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

SGD\|S000003443 ZPR1 "Essential protein with two zinc fingers" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PB28 ZNF259 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|O75312 ZNF259 "Zinc finger protein ZPR1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2TBX0 ZNF259 "Zinc finger protein ZPR1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2TBX0	ZPR1_BOVIN	No assigned EC number	0.3824	0.8571	0.9150	yes	no
Q62384	ZPR1_MOUSE	No assigned EC number	0.3873	0.8714	0.9302	yes	no
O75312	ZPR1_HUMAN	No assigned EC number	0.3782	0.8571	0.9150	yes	no
O16999	ZPR1_CAEEL	No assigned EC number	0.3653	0.8816	0.9494	yes	no
O13724	ZPR1_SCHPO	No assigned EC number	0.4139	0.8918	0.9520	yes	no
Q55E13	ZPR1_DICDI	No assigned EC number	0.4188	0.8428	0.8658	yes	no
P53303	ZPR1_YEAST	No assigned EC number	0.4323	0.8816	0.8888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_IV000811	hypothetical protein (506 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)	•	0.453

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		490
smart00709		160	smart00709, Zpr1, Duplicated domain in the epiderm	1e-72
pfam03367		160	pfam03367, zf-ZPR1, ZPR1 zinc-finger domain	4e-67
smart00709		160	smart00709, Zpr1, Duplicated domain in the epiderm	1e-63
pfam03367		160	pfam03367, zf-ZPR1, ZPR1 zinc-finger domain	2e-53
COG1779		201	COG1779, COG1779, C4-type Zn-finger protein [Gener	2e-36
COG1779		201	COG1779, COG1779, C4-type Zn-finger protein [Gener	1e-35
TIGR00310		192	TIGR00310, ZPR1_znf, ZPR1 zinc finger domain	5e-35
TIGR00310		192	TIGR00310, ZPR1_znf, ZPR1 zinc finger domain	3e-27
TIGR00340		163	TIGR00340, zpr1_rel, ZPR1-related zinc finger prot	5e-22
TIGR00340		163	TIGR00340, zpr1_rel, ZPR1-related zinc finger prot	5e-15

>gnl\|CDD\|128949 smart00709, Zpr1, Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1	Back alignment and domain information

 Score =  226 bits (579), Expect = 1e-72
 Identities = 88/162 (54%), Positives = 111/162 (68%), Gaps = 3/162 (1%)

Query: 32  SLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVP 91
           S C  CG NG TR LLT IP+FR+V++ +FEC HCG RNNEV+  G I+P+G   +LKV 
Sbjct: 1   SDCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYRNNEVKSGGAIEPKGTRITLKV- 59

Query: 92  SSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELE-ALQEERK 150
               +  +R VVKSE+ATI IPELD EIPP    G ++TVEG+L R  + L  A+QE R 
Sbjct: 60  -ESPEDLNRDVVKSETATISIPELDLEIPPGPLGGFITTVEGLLSRVREVLSQAIQETRD 118

Query: 151 KLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIEN 192
             DP+T E ID+FL KL+   +G   FT ILDDPAGNS+I+N
Sbjct: 119 DSDPETKEKIDEFLEKLKELIEGKEPFTLILDDPAGNSYIQN 160

Also present in archaeal proteins. Length = 160

>gnl\|CDD\|217516 pfam03367, zf-ZPR1, ZPR1 zinc-finger domain	Back alignment and domain information

>gnl\|CDD\|128949 smart00709, Zpr1, Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1	Back alignment and domain information

>gnl\|CDD\|217516 pfam03367, zf-ZPR1, ZPR1 zinc-finger domain	Back alignment and domain information

>gnl\|CDD\|224693 COG1779, COG1779, C4-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224693 COG1779, COG1779, C4-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|232914 TIGR00310, ZPR1_znf, ZPR1 zinc finger domain	Back alignment and domain information

>gnl\|CDD\|232914 TIGR00310, ZPR1_znf, ZPR1 zinc finger domain	Back alignment and domain information

>gnl\|CDD\|129440 TIGR00340, zpr1_rel, ZPR1-related zinc finger protein	Back alignment and domain information

>gnl\|CDD\|129440 TIGR00340, zpr1_rel, ZPR1-related zinc finger protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		490
KOG2703		460	consensus C4-type Zn-finger protein [General funct	100.0
TIGR00310		192	ZPR1_znf ZPR1 zinc finger domain.	100.0
TIGR00310		192	ZPR1_znf ZPR1 zinc finger domain.	100.0
smart00709		160	Zpr1 Duplicated domain in the epidermal growth fac	100.0
PF03367		161	zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004	100.0
smart00709		160	Zpr1 Duplicated domain in the epidermal growth fac	100.0
PF03367		161	zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004	100.0
TIGR00340		163	zpr1_rel ZPR1-related zinc finger protein. A model	100.0
TIGR00340		163	zpr1_rel ZPR1-related zinc finger protein. A model	100.0
KOG2703		460	consensus C4-type Zn-finger protein [General funct	100.0
COG1779		201	C4-type Zn-finger protein [General function predic	100.0
COG1779		201	C4-type Zn-finger protein [General function predic	100.0
PF10571		26	UPF0547: Uncharacterised protein family UPF0547; I	94.55
PF14353		128	CpXC: CpXC protein	93.83
PF14353		128	CpXC: CpXC protein	92.13
PF10571		26	UPF0547: Uncharacterised protein family UPF0547; I	92.05
PF09986		214	DUF2225: Uncharacterized protein conserved in bact	90.89
COG1326		201	Uncharacterized archaeal Zn-finger protein [Genera	90.69
PF09986		214	DUF2225: Uncharacterized protein conserved in bact	90.6
PHA00626		59	hypothetical protein	89.68
PHA00626		59	hypothetical protein	89.25
PRK00464		154	nrdR transcriptional regulator NrdR; Validated	88.74
PRK00398		46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.97
PF10058		54	DUF2296: Predicted integral membrane metal-binding	87.45
PRK03824		135	hypA hydrogenase nickel incorporation protein; Pro	86.41
PRK00464		154	nrdR transcriptional regulator NrdR; Validated	86.21
PRK14890		59	putative Zn-ribbon RNA-binding protein; Provisiona	85.65
PRK05978		148	hypothetical protein; Provisional	85.64
PRK12336		201	translation initiation factor IF-2 subunit beta; P	84.77
smart00440		40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	84.36
PRK03824		135	hypA hydrogenase nickel incorporation protein; Pro	84.31
PF13248		26	zf-ribbon_3: zinc-ribbon domain	84.3
COG2888		61	Predicted Zn-ribbon RNA-binding protein with a fun	83.33
PRK00398		46	rpoP DNA-directed RNA polymerase subunit P; Provis	83.04
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	81.94
smart00440		40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	81.52
COG1326		201	Uncharacterized archaeal Zn-finger protein [Genera	81.13
PRK05978		148	hypothetical protein; Provisional	80.93
COG0484		371	DnaJ DnaJ-class molecular chaperone with C-termina	80.47

>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.1e-148  Score=1127.24  Aligned_cols=450  Identities=52%  Similarity=0.861  Sum_probs=422.1

Q ss_pred             CCCCcccccccccchhccc--------cCCCCCCceEEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccc
Q 011230            1 MENNKEEIVDVGSVVEAVS--------ADDSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE   72 (490)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnE   72 (490)
                      |++++++|.++|++|+.++        ++..+++++|++|+||+||++|+|||++|+||||||||||||+|||||+|||+
T Consensus         1 ~~~~~~~~~~~~~~a~~v~~~ik~~~~ed~~~~~~~EvES~Cm~Cg~nG~TRlllT~IP~fREvVimSF~CpHCG~kN~e   80 (460)
T KOG2703|consen    1 SENKEDLFIPPGEAAANVSPLIKREGAEDVEGNPVQEVESLCMNCGENGTTRLLLTSIPYFREVVIMSFECPHCGHKNNE   80 (460)
T ss_pred             CCccccCCCChhHhhcccchhhhhhhhhhhhcCchHHHHHhhhhcccCCceeEEEeecchhheeeeEEeecCccCCcccc
Confidence            4567889999999999874        35588999999999999999999999999999999999999999999999999


Q ss_pred             eeeccccCCcceEEEEEeeCCCcccccceEEecCccEEEEeeeeeEeCCCCCCCceeeHHHHHHHHHHHHHHhhHHHhcC
Q 011230           73 VQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKL  152 (490)
Q Consensus        73 vq~~g~i~~kG~r~tl~V~~~~~~DLnR~VvkS~~ati~IPEL~~eI~p~~~~G~iTTVEGlL~~~~~~L~~~~~~r~~~  152 (490)
                      ||+++.+|++|+||+|+|.  +.+|||||||||++|+|+||||+||||+.+|+|.||||||+|.|++++|+++|+.|+..
T Consensus        81 iQ~a~~iQ~~Gvri~l~V~--s~EDlnRqVvkSe~Asi~IpEldlEIP~~Sq~GslTTVEGiL~r~~d~LsqdQekRr~~  158 (460)
T KOG2703|consen   81 IQSAEEIQEGGVRIELRVQ--SVEDLNRQVVKSESASIEIPELDLEIPAKSQKGSLTTVEGILERVIDGLSQDQEKRRIT  158 (460)
T ss_pred             ccchhccccCceEEEEEec--cHHHhhhHhhhcccceeecccceeeccccccCCceeehHHHHHHHHHHHhhhhhhhccc
Confidence            9999999999999999999  99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCCCeeeecCCCCCCCCCeeEEEecCCHHHHHHcCCCCCCCccCCCCCC
Q 011230          153 DPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNV  232 (490)
Q Consensus       153 ~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS~I~~~~ap~~D~~~~~~~y~Rt~eq~~~LGl~~~~~~~~~~~~~  232 (490)
                      +|+.+++|++|+.||+.++.+..|||||++||+|||||+++.+|..||+|++.+|.||.+||+.|||...++.+.+-   
T Consensus       159 ~pa~a~~Id~fi~kl~s~k~~~~pftlildDp~GNS~iEnp~~p~~dp~~~~~~y~Rt~eqne~lgl~~~~~~e~~~---  235 (460)
T KOG2703|consen  159 DPATAKQIDDFIVKLKSLKELTTPFTLILDDPTGNSFIENPHAPRVDPRLKIVHYLRTLEQNELLGLVDKNQEESEV---  235 (460)
T ss_pred             CHHHHHHHHHHHHHHHHHhhcCCceEEEecCCCCCccccCCCCCCCCCcceeEEEecCHhHHHhhccccccchhhhc---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999776544220   


Q ss_pred             CCCCCCCCCCCCCCCCCCccccccccccccCCcHHHHHhhhccCCCCcceEeeccCcCCccccceeEEEeecCCCCcEEE
Q 011230          233 VPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIV  312 (490)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviI  312 (490)
                      .+.                        ++.++. .+.++     +++||+.|++.||+|.+++.|+|++++|||||||||
T Consensus       236 ~k~------------------------~a~~~~-~di~~-----~~~EV~~F~t~Cp~C~~pcet~Mk~~~IPhFkeVIi  285 (460)
T KOG2703|consen  236 LKP------------------------IAASEA-TDIED-----APNEVLTFPTTCPSCTAPCETNMKLTDIPHFKEVII  285 (460)
T ss_pred             ccc------------------------cccccc-chhhc-----cccceEEccCCCCCCCCchhccceeccCCcceeEEE
Confidence            000                        001111 11222     389999999999999999999999999999999999


Q ss_pred             EEeecCCCCCCccccccCCCCCCCCeEEEEEEcCcccccceeeeeCceeEEecceeeeecCCCccceeEeHHHHHHHHHH
Q 011230          313 MASTCDACGYRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISE  392 (490)
Q Consensus       313 msf~C~~CGyr~nEVk~gg~i~~kG~ritL~V~~~eDL~R~VlKS~ta~v~IPEL~lei~pGtl~G~~TTVEGlL~~i~d  392 (490)
                      ||++|++||||+||||+||+|+++|+||||+|.+.+||+||||||+||++.||||+|++.+|+|||+||||||||.++++
T Consensus       286 Mst~Cd~CGyksnEvKsGGai~~~G~ritl~~~~~~DlsRDvlKseTcs~~IPEl~lel~~~~LgGrfTTiEGLl~~~~e  365 (460)
T KOG2703|consen  286 MSTVCDRCGYKSNEVKSGGAIPDKGRRITLKVEDAEDLSRDVLKSETCSLSIPELDLELGGGTLGGRFTTIEGLLTQIRE  365 (460)
T ss_pred             EeecccccCCccccccCCCCcCCCCcEEEEEecchHhhhHHHhhccccceeccccceeccCccccceeeeHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCcCCCCCCCHHHHHHHHHHHHHHHHhhcCCCceEEEEEcCCCCccccCCCCCCCCCCCeEEEEecCCHHHHHhc
Q 011230          393 SLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEEL  472 (490)
Q Consensus       393 ~L~~~~~~~~gds~~~e~~~k~~~fl~~L~~~~~g~~~fTlIidDP~GnS~I~~~~~~p~~Dp~l~~~~Y~RT~eqne~L  472 (490)
                      +|.. ++|..+||+++..+++|.+|+++|.++++|+.|||||||||+||||| ||+|||++||+|++|+|+|||||||+|
T Consensus       366 ~l~~-~~f~~~DS~~~~~~~~~~~F~~~l~~~i~~~~~~tlIldDp~~~syv-q~~~ap~~dp~lt~E~Y~Rt~eqNeeL  443 (460)
T KOG2703|consen  366 QLDG-RSFTFGDSMDEGQKARWQEFLAKLDDIIAGKLPATLILDDPLGNSYV-QNVYAPDDDPNLTVEEYERTYEQNEEL  443 (460)
T ss_pred             HHhc-CceeccccCCHHHHHHHHHHHHHHHHHHhcccceEEEeecCCcCccc-ccccCCCCCCcccHHHhhhhhhhhhhc
Confidence            9998 56878999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             CCCCCCCCchhhhcc
Q 011230          473 GLNDIDTSSADAAYN  487 (490)
Q Consensus       473 Gl~dm~~e~y~~~~~  487 (490)
                      ||||||||||++++.
T Consensus       444 GlnDmkte~yE~~~~  458 (460)
T KOG2703|consen  444 GLNDMKTENYEEDEP  458 (460)
T ss_pred             CccccccccccccCC
Confidence            999999999988754

>TIGR00310 ZPR1_znf ZPR1 zinc finger domain	Back alignment and domain information

>TIGR00310 ZPR1_znf ZPR1 zinc finger domain	Back alignment and domain information

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1	Back alignment and domain information

>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1	Back alignment and domain information

>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>TIGR00340 zpr1_rel ZPR1-related zinc finger protein	Back alignment and domain information

>TIGR00340 zpr1_rel ZPR1-related zinc finger protein	Back alignment and domain information

>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>COG1779 C4-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>COG1779 C4-type Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines	Back alignment and domain information

>PF14353 CpXC: CpXC protein	Back alignment and domain information

>PF14353 CpXC: CpXC protein	Back alignment and domain information

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines	Back alignment and domain information

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function	Back alignment and domain information

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function	Back alignment and domain information

>PHA00626 hypothetical protein	Back alignment and domain information

>PHA00626 hypothetical protein	Back alignment and domain information

>PRK00464 nrdR transcriptional regulator NrdR; Validated	Back alignment and domain information

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional	Back alignment and domain information

>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function []	Back alignment and domain information

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional	Back alignment and domain information

>PRK00464 nrdR transcriptional regulator NrdR; Validated	Back alignment and domain information

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional	Back alignment and domain information

>PRK05978 hypothetical protein; Provisional	Back alignment and domain information

>PRK12336 translation initiation factor IF-2 subunit beta; Provisional	Back alignment and domain information

>smart00440 ZnF_C2C2 C2C2 Zinc finger	Back alignment and domain information

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional	Back alignment and domain information

>PF13248 zf-ribbon_3: zinc-ribbon domain	Back alignment and domain information

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional	Back alignment and domain information

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00440 ZnF_C2C2 C2C2 Zinc finger	Back alignment and domain information

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]	Back alignment and domain information

>PRK05978 hypothetical protein; Provisional	Back alignment and domain information

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		490
2qkd_A		404	Crystal Structure Of Tandem Zpr1 Domains Length = 4		5e-87
2qkd_A		404	Crystal Structure Of Tandem Zpr1 Domains Length = 4		1e-29

>pdb|2QKD|A Chain A, Crystal Structure Of Tandem Zpr1 Domains Length = 404

Back alignment and structure

Iteration: 1

Score = 318 bits (814), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 173/442 (39%), Positives = 263/442 (59%), Gaps = 48/442 (10%) Query: 30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLK 89 +ESLCM C NG TR LLT IP FR++++S+F C HCG N E+Q AG IQ +G Y+L Sbjct: 11 IESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLT 70 Query: 90 VPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEER 149 V S Q+ +R+VVK++SAT +IPELDFEIP +Q+G+L+TVEG++ RA LE Q R Sbjct: 71 VRS--QEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTR 128 Query: 150 KKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPSLNIKFYER 209 + ++ AE ID+F+ KL+ + S FT ++DDP+GNSF+EN +AP D +L I +Y+R Sbjct: 129 RAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNSFVENPHAPQKDNALVITYYDR 188 Query: 210 TPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEIA 269 TP+Q +LG + ++ + +E L Sbjct: 189 TPQQAEMLGLQAEAPEEKAEEEDLRNEVLQ------------------------------ 218 Query: 270 DALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKP 329 F + PE C A +T M + +IP+F+EVI+MA+ C+ CG+R +E+K Sbjct: 219 ---FNTNCPE-----------CNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKS 264 Query: 330 GGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITK 389 GG + G RITL + + +D++RDL+KS+T V+IPEL+ EL LGG TT+EGL+ Sbjct: 265 GGAVEPLGTRITLHITDPSDMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKD 324 Query: 390 ISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALANSFIAPVTD 449 I E + + + F+ GDS + ++ K Q+F KL +++ + I++D NS++ V Sbjct: 325 IRELVTK-NPFTLGDSSNPDQSEKLQEFSQKLGQIIEGKMKAHFIMNDPAGNSYLQNVYA 383 Query: 450 DIKDDHQLTFEEYERSWEQNEE 471 +DD ++ E Y+R+++QNEE Sbjct: 384 P-EDDPEMKVERYKRTFDQNEE 404

PyMOL of 2qkd

>pdb|2QKD|A Chain A, Crystal Structure Of Tandem Zpr1 Domains Length = 404

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		490
2qkd_A		404	Zinc finger protein ZPR1; helical hairpins, beta h	1e-170
2qkd_A		404	Zinc finger protein ZPR1; helical hairpins, beta h	1e-58
2qkd_A		404	Zinc finger protein ZPR1; helical hairpins, beta h	3e-54
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Length = 404	Back alignment and structure

 Score =  484 bits (1246), Expect = e-170
 Identities = 171/450 (38%), Positives = 261/450 (58%), Gaps = 48/450 (10%)

Query: 22  DSDAPLYQVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQP 81
                   +ESLCM C  NG TR LLT IP FR++++S+F C HCG  N E+Q AG IQ 
Sbjct: 3   HHHHHHGSIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD 62

Query: 82  RGCNYSLKVPSSDQKMFHRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILVRAADE 141
           +G  Y+L V    Q+  +R+VVK++SAT +IPELDFEIP  +Q+G+L+TVEG++ RA   
Sbjct: 63  QGVRYTLTV--RSQEDMNREVVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISG 120

Query: 142 LEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNSFIENLYAPSPDPS 201
           LE  Q  R+ ++   AE ID+F+ KL+   +  S FT ++DDP+GNSF+EN +AP  D +
Sbjct: 121 LEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNSFVENPHAPQKDNA 180

Query: 202 LNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIA 261
           L I +Y+RTP+Q  +LG   +  ++      +                            
Sbjct: 181 LVITYYDRTPQQAEMLGLQAEAPEEKAEEEDL---------------------------- 212

Query: 262 QSNSAEIADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACG 321
                             EV+ F + C  C A  +T M + +IP+F+EVI+MA+ C+ CG
Sbjct: 213 ----------------RNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCG 256

Query: 322 YRNSELKPGGRIPEKGKRITLFVKNINDLSRDLIKSDTAGVKIPELDLELAGGTLGGIVT 381
           +R +E+K GG +   G RITL + + +D++RDL+KS+T  V+IPEL+ EL    LGG  T
Sbjct: 257 HRTNEVKSGGAVEPLGTRITLHITDPSDMTRDLLKSETCSVEIPELEFELGMAVLGGKFT 316

Query: 382 TVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVEESWTLILDDALAN 441
           T+EGL+  I E + + + F+ GDS + ++  K Q+F  KL +++  +     I++D   N
Sbjct: 317 TLEGLLKDIRELVTK-NPFTLGDSSNPDQSEKLQEFSQKLGQIIEGKMKAHFIMNDPAGN 375

Query: 442 SFIAPVTDDIKDDHQLTFEEYERSWEQNEE 471
           S++  V    +DD ++  E Y+R+++QNEE
Sbjct: 376 SYLQNVYAP-EDDPEMKVERYKRTFDQNEE 404

PyMOL of 2qkd

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Length = 404	Back alignment and structure

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} Length = 404	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		490
2qkd_A		404	Zinc finger protein ZPR1; helical hairpins, beta h	100.0
2qkd_A		404	Zinc finger protein ZPR1; helical hairpins, beta h	100.0
1qyp_A		57	RNA polymerase II; transcription, RPB9, Zn ribbon,	91.03
1qyp_A		57	RNA polymerase II; transcription, RPB9, Zn ribbon,	88.85
4ayb_P		48	DNA-directed RNA polymerase; transferase, multi-su	84.69
1k81_A		36	EIF-2-beta, probable translation initiation factor	82.43
3h0g_I		113	DNA-directed RNA polymerases I, II, and III subuni	80.42

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}	Back alignment and structure

Probab=100.00  E-value=4.9e-138  Score=1076.80  Aligned_cols=395  Identities=43%  Similarity=0.765  Sum_probs=374.4

Q ss_pred             EEeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccceeeccccCCcceEEEEEeeCCCcccccceEEecCcc
Q 011230           29 QVESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNEVQFAGEIQPRGCNYSLKVPSSDQKMFHRQVVKSESA  108 (490)
Q Consensus        29 eies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnEvq~~g~i~~kG~r~tl~V~~~~~~DLnR~VvkS~~a  108 (490)
                      .++|+||+||++|.||+++|+||||||||||||.|+||||||||||++|+++|||+||+|+|+  +++|||||||||++|
T Consensus        10 ~~~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~pkG~r~tL~V~--~~~DLnr~VvKS~ta   87 (404)
T 2qkd_A           10 SIESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVR--SQEDMNREVVKTDSA   87 (404)
T ss_dssp             -CEEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCSSEEEEEEEEC--SHHHHTCEEEECTTC
T ss_pred             CccccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCCCcEEEEEEEC--ChhcccceEEEcCCc
Confidence            589999999999999999999999999999999999999999999999999999999999999  999999999999999


Q ss_pred             EEEEeeeeeEeCCCCCCCceeeHHHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCCCe
Q 011230          109 TIKIPELDFEIPPEAQRGSLSTVEGILVRAADELEALQEERKKLDPQTAEAIDQFLLKLRACAKGDSTFTFILDDPAGNS  188 (490)
Q Consensus       109 ti~IPEL~~eI~p~~~~G~iTTVEGlL~~~~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pFTliidDPsGNS  188 (490)
                      +|+||||+|||||++++|+||||||+|.+++++|+..|+.|+..+|+.++||++|+++|+++++|+.|||||||||+|||
T Consensus        88 ti~IPEL~~eI~pg~~~G~iTTVEGlL~~~~~~L~~~~~~r~~~~~e~~~ki~~~i~kL~~~~~g~~pfTliidDP~GnS  167 (404)
T 2qkd_A           88 TTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNS  167 (404)
T ss_dssp             EEEEGGGTEEECTTSSCCEEEEHHHHHHHHHHHHHTTHHHHHHHCHHHHHHHHHHHHHHHHGGGCSSCEEEEEEETTSCC
T ss_pred             EEEeeeeeEEecCccCCceEEeHHHHHHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCCe
Confidence            99999999999998899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCCCCCCeeEEEecCCHHHHHHcCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccCCcHHH
Q 011230          189 FIENLYAPSPDPSLNIKFYERTPEQQALLGYLVDPSQQGESSNVVPSEGLSSTSDKREPRGSVGAVAGHRAIAQSNSAEI  268 (490)
Q Consensus       189 ~I~~~~ap~~D~~~~~~~y~Rt~eq~~~LGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (490)
                      ||+++++|..||+|++++|.||+|||++|||..+++....                                 ...+   
T Consensus       168 ~I~~~~~p~~d~~~~~~~y~Rt~eqn~~LGl~~~~~~~~~---------------------------------~~~d---  211 (404)
T 2qkd_A          168 FVENPHAPQKDNALVITYYDRTPQQAEMLGLQAEAPEEKA---------------------------------EEED---  211 (404)
T ss_dssp             EECCTTTTSCCTTEEEEEECCCHHHHHHTTC-------------------------------------------CCC---
T ss_pred             eeecCCCCCCCCceEEEEcCCCHHHHHhcCCCcccccccc---------------------------------cccc---
Confidence            9999999999999999999999999999999864321000                                 0000   


Q ss_pred             HHhhhccCCCCcceEeeccCcCCccccceeEEEeecCCCCcEEEEEeecCCCCCCccccccCCCCCCCCeEEEEEEcCcc
Q 011230          269 ADALFRYSAPEEVMTFPSTCGACAASCETRMFMTRIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLFVKNIN  348 (490)
Q Consensus       269 ~~~~~~~~~~~ev~~~~s~Cp~C~~~~~t~m~~~~IP~FkeviImsf~C~~CGyr~nEVk~gg~i~~kG~ritL~V~~~e  348 (490)
                              ..++|++|++.||+|+++|.|+|++++||||||||||||.|+|||||+||||+||+++++|+||||+|++++
T Consensus       212 --------~~~ev~~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i~~~G~ritL~V~~~~  283 (404)
T 2qkd_A          212 --------LRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPS  283 (404)
T ss_dssp             --------CCCCEEEEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSSCCCEEEEEEEECSGG
T ss_pred             --------cccceeeecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeeccccCCCcEEEEEEECChH
Confidence                    036899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeeCceeEEecceeeeecCCCccceeEeHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHhhcCC
Q 011230          349 DLSRDLIKSDTAGVKIPELDLELAGGTLGGIVTTVEGLITKISESLERVHGFSFGDSLDENKRTKWQDFKAKLNKLLSVE  428 (490)
Q Consensus       349 DL~R~VlKS~ta~v~IPEL~lei~pGtl~G~~TTVEGlL~~i~d~L~~~~~~~~gds~~~e~~~k~~~fl~~L~~~~~g~  428 (490)
                      ||+|+||||+||+|+||||+|+|+||+++|+||||||||.+++++|+..+ |..|||++++.++||++|+++|+++++|+
T Consensus       284 DL~R~VvKS~ta~i~IPEL~lei~pg~~~G~~TTVEGlL~~i~d~L~~~~-~~~~ds~~~~~~~k~~~f~~kL~~~~~g~  362 (404)
T 2qkd_A          284 DMTRDLLKSETCSVEIPELEFELGMAVLGGKFTTLEGLLKDIRELVTKNP-FTLGDSSNPDQSEKLQEFSQKLGQIIEGK  362 (404)
T ss_dssp             GGGCEEEECTTCEEEEGGGTEEECTTTTCSEEEEHHHHHHHHHHHHHSSC-CCSSSCCCGGGCHHHHHHHHHHHHHHTTS
T ss_pred             HccceeEecCceEEEeeeeeEEecCCCCCceEEeHHHHHHHHHHHHhhcc-cccccCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999977 77899999999999999999999999999


Q ss_pred             CceEEEEEcCCCCccccCCCCCCCCCCCeEEEEecCCHHHHHh
Q 011230          429 ESWTLILDDALANSFIAPVTDDIKDDHQLTFEEYERSWEQNEE  471 (490)
Q Consensus       429 ~~fTlIidDP~GnS~I~~~~~~p~~Dp~l~~~~Y~RT~eqne~  471 (490)
                      .||||||+||+||||| +|+++|++||+|++++|+||+|||++
T Consensus       363 ~pfTliidDP~GnS~I-~~~~~p~~d~~l~~e~Y~RT~eqne~  404 (404)
T 2qkd_A          363 MKAHFIMNDPAGNSYL-QNVYAPEDDPEMKVERYKRTFDQNEE  404 (404)
T ss_dssp             SCEEEEEEETTCCCEE-CCTTTTSCCTTEEEEEECCCCCTTTC
T ss_pred             CCeEEEEECCCCCccc-cCCCCCCCCCCceEEEccCChHHccC
Confidence            9999999999999999 99999999999999999999999984

PyMOL of 2qkd

>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}	Back alignment and structure

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1	Back alignment and structure

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1	Back alignment and structure

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X	Back alignment and structure

>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1	Back alignment and structure

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		490
d1twfi2		72	RBP9 subunit of RNA polymerase II {Baker's yeast (	87.68
d1qypa_		57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	86.98
d2j0151		59	Ribosomal protein L32p {Thermus thermophilus [TaxI	83.6
d2j0151		59	Ribosomal protein L32p {Thermus thermophilus [TaxI	83.19

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.68  E-value=0.17  Score=38.78  Aligned_cols=42  Identities=14%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             EeccCCccCCCceEEEEEeecCCccceEEEEeecCCCCCCccc
Q 011230           30 VESLCMRCGENGVTRFLLTLIPHFRKVLLSAFECPHCGERNNE   72 (490)
Q Consensus        30 ies~Cp~Cg~~g~trlllt~IP~F~eviimSf~C~~CGyrnnE   72 (490)
                      +...||.||.+..+ ++...+=---|=+-.-|.|-+||++..+
T Consensus        22 t~~~CpkCg~~~a~-~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          22 SDRECPKCHSRENV-FFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCCTTTCCCCEE-EEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             cCCCCCCCCCCeEE-EEEeecCccCCCceEEEEcCCCCCCccc
Confidence            46789999965433 2223332234666678999999998875

PyMOL of d1twfi2

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}	Back information, alignment and structure

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure