BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011231
(490 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W234|SEUSS_ARATH Transcriptional corepressor SEUSS OS=Arabidopsis thaliana GN=SEU
PE=1 SV=1
Length = 877
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 308/510 (60%), Positives = 350/510 (68%), Gaps = 64/510 (12%)
Query: 1 MPREYQNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELI 60
MPRE QN+SGQIVL+YAKA QESVFE LRVVRDGQLRIVFSPDLKI SWEFCARRHEELI
Sbjct: 406 MPRESQNSSGQIVLEYAKATQESVFEHLRVVRDGQLRIVFSPDLKIFSWEFCARRHEELI 465
Query: 61 PRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMFVASARQLAKALEVPLVND 120
PRRLLIPQVSQLG+AAQKYQ A QNA+++ + PELQNNCNMFVASARQLAKALEVPLVND
Sbjct: 466 PRRLLIPQVSQLGSAAQKYQQAAQNATTDSALPELQNNCNMFVASARQLAKALEVPLVND 525
Query: 121 LGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSGASGFHSPS-QQPE 179
LGYTKRYVRCLQISEVVNSMKDLIDYSR T TGP+ESLAKFPRRT +S PS QQ
Sbjct: 526 LGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIESLAKFPRRTGPSSALPGPSPQQAS 585
Query: 180 DQLQ-----------------QQQQQQQTVGQNSNSE-SSVQANAMQLATSNGVANVNNS 221
DQL+ QQQQQQQTV QN+NS+ SS Q MQ SNG VN +
Sbjct: 586 DQLRQQQQQQQQQQQQQQQQQQQQQQQQTVSQNTNSDQSSRQVALMQGNPSNG---VNYA 642
Query: 222 LNPASASSTASTIVGLLHQNSMNSRQQNTVNN-ASSPYGGSSVQMPSPGSSNNI----PQ 276
N ASAS++ S+I GL+HQNSM R QN N +SPYGG+SVQM SP SS + Q
Sbjct: 643 FNAASASTSTSSIAGLIHQNSMKGRHQNAAYNPPNSPYGGNSVQMQSPSSSGTMVPSSSQ 702
Query: 277 AQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPALSGEADPRALSG 336
Q N FQSPT SS+NN S + + + NHM S +SPA +QQ +GE D
Sbjct: 703 QQHNLPTFQSPTSSSNNN--NPSQNGIPSVNHMGSTNSPA---MQQ---AGEVD------ 748
Query: 337 DADPSDSQSAVQKILHEMMLCSHLNGGSGGGGGMVGVGSLGNDVKNVNDIMATGNNTVLN 396
+ S+VQKIL+E+++ + + S GG MVG GS GND K ++ ++G
Sbjct: 749 ----GNESSSVQKILNEILMNNQAHNNS-SGGSMVGHGSFGNDGKGQANVNSSGV----- 798
Query: 397 GGNGLVGNGTVNNNPGIGTGGYGNMGGGLGQSAMVNGIRAAMGNNSMMNGRVGMTAMARD 456
L+ NG VNNN GG G GGG+GQS NGI GNNS+MNGRVGM M RD
Sbjct: 799 ----LLMNGQVNNNNNTNIGGAGGFGGGIGQSMAANGINNINGNNSLMNGRVGM--MVRD 852
Query: 457 QSMNHQQDLGNQLLNGLGAVNGFNNLQFDW 486
N QQDLGNQL LGAVNGFNN FDW
Sbjct: 853 P--NGQQDLGNQL---LGAVNGFNN--FDW 875
>sp|O74364|ADN1_SCHPO Adhesion defective protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=adn1 PE=3 SV=1
Length = 391
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 28/171 (16%)
Query: 28 LRVVRDGQLRIVF--SPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQN 85
++V+ G LR F +P LK+ S EF A H E + R L+ S + ++ Q Q+
Sbjct: 133 VQVIVSGHLRAHFFRAPLLKLDSLEFSAVGHSEYLLRELMT-NASLALSQSRPPQNQIQH 191
Query: 86 ASSNLSAPELQN-NCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLI 144
P ++ N N + VN+ G +R ++I+E ++ M+DLI
Sbjct: 192 DGVKSEDPSSESVNINSSSSLLPDSP-------VNEYGLEPHIMRFMEITETISGMRDLI 244
Query: 145 DYSRVTGTGPMESLAKFPRRTSGASGFHSPSQQPEDQLQQQQQQQQTVGQN 195
++ +GP +L KF LQQQ Q Q++ N
Sbjct: 245 AFTLAQRSGPTSALHKF-----------------ATALQQQHQMQKSTSSN 278
>sp|P48383|SAK1_SCHPO Protein sak1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sak1 PE=1 SV=2
Length = 766
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 51/127 (40%), Gaps = 24/127 (18%)
Query: 213 NGVANVNNSLNPASASSTASTIVGLLHQNSMNSRQQNTVNNASSPYGGSSVQMPSPGSSN 272
+ + N N + + AS A+ IV +++ V +S PY +P GS
Sbjct: 212 SSIQNTNQRVESSPASVNAAAIV-----------RKSAVTPSSDPYNSPPPSIPLLGSQT 260
Query: 273 NI--------PQAQPNPSPFQSPTPSSSNNPPQTSHSALTAANHMSSASSPANISVQQPA 324
N+ PQA P PS S SN PPQ SHS++ + S S P S P
Sbjct: 261 NLQLAPSFAAPQAHPLPSHL-----SQSNVPPQLSHSSVPSPAPPRSVSQPTYFSQPMPQ 315
Query: 325 LSGEADP 331
S P
Sbjct: 316 FSSSFVP 322
>sp|Q54TK8|GEFP_DICDI Ras guanine nucleotide exchange factor P OS=Dictyostelium
discoideum GN=gefP PE=2 SV=1
Length = 1502
Score = 32.7 bits (73), Expect = 6.0, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 269 GSSNNIPQAQPNPSPFQSPTPSSSNNPPQTSHSALT-AANHMSSASSPANIS 319
G N+I Q N SP QSP P NNPP S S L + N SS NIS
Sbjct: 761 GVGNSINQPPSNSSPKQSPVP---NNPPSVSQSFLNLSMNSKSSKKKKDNIS 809
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,835,889
Number of Sequences: 539616
Number of extensions: 8365923
Number of successful extensions: 90934
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 1988
Number of HSP's that attempted gapping in prelim test: 54106
Number of HSP's gapped (non-prelim): 22358
length of query: 490
length of database: 191,569,459
effective HSP length: 122
effective length of query: 368
effective length of database: 125,736,307
effective search space: 46270960976
effective search space used: 46270960976
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)