Query 011231
Match_columns 490
No_of_seqs 109 out of 120
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 03:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iot_A Maltose-binding protein 69.7 0.73 2.5E-05 45.5 -0.8 36 132-167 335-370 (449)
2 1z3e_B DNA-directed RNA polyme 20.4 28 0.00094 28.0 0.6 40 113-154 7-51 (73)
3 1j6q_A Cytochrome C maturation 17.9 1.1E+02 0.0037 27.4 4.0 37 28-64 67-115 (136)
4 3gfk_B DNA-directed RNA polyme 15.1 32 0.0011 28.2 -0.1 40 113-154 14-58 (79)
5 3k4g_A DNA-directed RNA polyme 14.8 36 0.0012 28.4 0.1 42 112-155 9-55 (86)
6 1uxx_X Xylanase U; carbohydrat 14.4 1.2E+02 0.0043 25.6 3.4 20 35-54 110-129 (133)
7 4hyz_A Uncharacterized protein 12.7 3E+02 0.01 22.9 5.3 32 15-50 82-113 (114)
8 1uy4_A Endo-1,4-beta-xylanase 11.5 1.8E+02 0.0063 25.1 3.6 19 35-53 125-143 (145)
9 1od3_A Putative xylanase; hydr 10.9 1.8E+02 0.006 26.1 3.4 20 35-54 147-166 (168)
10 2v4v_A GH59 galactosidase; hyd 10.9 1.6E+02 0.0054 24.6 2.9 19 34-52 106-128 (129)
No 1
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=69.73 E-value=0.73 Score=45.48 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=24.5
Q ss_pred hHHHHHhchHHHHHHhhccCCChHHHHhhhhcccCC
Q 011231 132 QISEVVNSMKDLIDYSRVTGTGPMESLAKFPRRTSG 167 (490)
Q Consensus 132 EIAEVVnqMkDLm~FS~~p~LGPiEALkqfv~q~~~ 167 (490)
++.++-.-|.+.+.-...-.+.|-|||+++.++...
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~eeal~~~~~~~~~ 370 (449)
T 3iot_A 335 QMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAA 370 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445555566666654446677899999998887654
No 2
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=20.38 E-value=28 Score=28.00 Aligned_cols=40 Identities=25% Similarity=0.515 Sum_probs=32.1
Q ss_pred ccCCccCCCCCcccchhhhhHHHHHhchHHHHHHhh-----ccCCCh
Q 011231 113 LEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSR-----VTGTGP 154 (490)
Q Consensus 113 ldlP~VNe~GvpkrvmRcLEIAEVVnqMkDLm~FS~-----~p~LGP 154 (490)
++.| |.+++++.|.++||.=+ -+.-..||..|+. -.++|+
T Consensus 7 l~~~-Ie~L~LS~Ra~NcLkra-gI~Tv~dL~~~s~~dLlki~n~G~ 51 (73)
T 1z3e_B 7 LEMT-IEELDLSVRSYNCLKRA-GINTVQELANKTEEDMMKVRNLGR 51 (73)
T ss_dssp HTCB-GGGSCCBHHHHHHHHHT-TCCBHHHHHTSCHHHHHTSTTCCH
T ss_pred hcCc-HHHhCCCHHHHHHHHHc-CCCcHHHHHcCCHHHHHHcCCCCH
Confidence 3455 88999999999999854 5788899998887 367786
No 3
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=17.88 E-value=1.1e+02 Score=27.39 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=20.4
Q ss_pred eEEEEeeeEE------------EEECCCCceeEEEEeecceecccccch
Q 011231 28 LRVVRDGQLR------------IVFSPDLKICSWEFCARRHEELIPRRL 64 (490)
Q Consensus 28 ~qVV~~GtLR------------a~FdpdLKIEswEF~t~~HEEyIPR~~ 64 (490)
+.|+++|.|= -.|+++-.+..=|.-+++.|+|-|...
T Consensus 67 v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLaKhdekY~p~ev 115 (136)
T 1j6q_A 67 ILVTYDDLLPDLFREGQGIVAQGVLGEDGKLAATEVLAKHDENYMPPEV 115 (136)
T ss_dssp EEEEECSCCTTSCCSSSEEEEEEEECSTTSEEEEEEECCC---------
T ss_pred EEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCCHHH
Confidence 6666666552 124668899999999999999999763
No 4
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=15.07 E-value=32 Score=28.19 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=31.1
Q ss_pred ccCCccCCCCCcccchhhhhHHHHHhchHHHHHHhh-----ccCCCh
Q 011231 113 LEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSR-----VTGTGP 154 (490)
Q Consensus 113 ldlP~VNe~GvpkrvmRcLEIAEVVnqMkDLm~FS~-----~p~LGP 154 (490)
++.| |.+++++.|.++||.=+. |....||..|+. -.++|+
T Consensus 14 l~~~-Ie~L~LS~Ra~NcLk~ag-I~Tv~dL~~~se~dLlki~n~G~ 58 (79)
T 3gfk_B 14 LEMT-IEELDLSVRSYNCLKRAG-INTVQELANKTEEDMMKVRNLGR 58 (79)
T ss_dssp GGCB-GGGSCCBHHHHHHHHHTT-CCBHHHHTTCCHHHHTTSTTCHH
T ss_pred hcCc-HHHhCCCHHHHHHHHHhC-CCCHHHHHhCCHHHHHHcCCCCH
Confidence 4455 889999999999998766 677888888776 256665
No 5
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=14.80 E-value=36 Score=28.39 Aligned_cols=42 Identities=29% Similarity=0.474 Sum_probs=32.6
Q ss_pred hccCCccCCCCCcccchhhhhHHHHHhchHHHHHHhh-----ccCCChH
Q 011231 112 ALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSR-----VTGTGPM 155 (490)
Q Consensus 112 ~ldlP~VNe~GvpkrvmRcLEIAEVVnqMkDLm~FS~-----~p~LGPi 155 (490)
.++.| |.+++++.|..+||.=+. |.-..||..++. -.++|+.
T Consensus 9 ~l~~~-I~~L~LSvRa~NcLkrag-I~Tv~dL~~~se~dLlki~n~G~K 55 (86)
T 3k4g_A 9 ILLRP-VDDLELTVRSANCLXAEA-IHYIGDLVQRTEVELLXTPNLGXX 55 (86)
T ss_dssp GGGSB-GGGGCCCHHHHHHHHHTT-CCBHHHHHHSCHHHHHTSTTCCHH
T ss_pred HHhCc-HHHhCCCHHHHHHHHHcC-CCcHHHHHhCCHHHHhhccccCcc
Confidence 34555 889999999999998766 677888888876 3667763
No 6
>1uxx_X Xylanase U; carbohydrate binding module, CBM6, xylopentaose binding, xylan degradation; HET: XYP; 1.6A {Clostridium thermocellum} SCOP: b.18.1.10 PDB: 1gmm_A*
Probab=14.42 E-value=1.2e+02 Score=25.62 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.4
Q ss_pred eEEEEECCCCceeEEEEeec
Q 011231 35 QLRIVFSPDLKICSWEFCAR 54 (490)
Q Consensus 35 tLRa~FdpdLKIEswEF~t~ 54 (490)
.||+.|.-.+.|+||+|...
T Consensus 110 ~l~l~f~G~~nl~~~~f~~~ 129 (133)
T 1uxx_X 110 DLYLVFSGPVNIDYFIFDSN 129 (133)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEcC
Confidence 68888988899999999864
No 7
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=12.71 E-value=3e+02 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.421 Sum_probs=24.4
Q ss_pred EecceeEEEEeeceEEEEeeeEEEEECCCCceeEEE
Q 011231 15 DYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWE 50 (490)
Q Consensus 15 E~~KAs~~y~Fen~qVV~~GtLRa~FdpdLKIEswE 50 (490)
++.-+.+...|++..| +.|+.|+.+.||.-|-
T Consensus 82 ~y~vv~~~~~ye~~~~----~f~i~Fd~d~kl~G~~ 113 (114)
T 4hyz_A 82 KYGGVIIVVKYEEGNV----NYSLAYDEDMNLVSFT 113 (114)
T ss_dssp EEEEEEEEEEETTEEE----EEEEEECTTSCEEEEE
T ss_pred ceEEEEEEEEEeccce----EEEEEECCCCcEeeeE
Confidence 3566777888888555 3579999999998764
No 8
>1uy4_A Endo-1,4-beta-xylanase A; carbohydrate-binding module, thermodynamics, protein structure, protein-carbohydrate interactions; HET: XYP; 1.69A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1uy1_A* 1uy3_A* 1uy2_A*
Probab=11.46 E-value=1.8e+02 Score=25.15 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=16.9
Q ss_pred eEEEEECCCCceeEEEEee
Q 011231 35 QLRIVFSPDLKICSWEFCA 53 (490)
Q Consensus 35 tLRa~FdpdLKIEswEF~t 53 (490)
.|++.|.-.+.|+||+|..
T Consensus 125 ~lyl~f~g~~nl~~~~F~~ 143 (145)
T 1uy4_A 125 DIVLVFSGPVNVDNFIFSR 143 (145)
T ss_dssp EEEEEESSCCEEEEEEEEE
T ss_pred EEEEEEeCCeEEEEEEEEe
Confidence 6889998899999999974
No 9
>1od3_A Putative xylanase; hydrolase, carbohydrate binding module, beta-sandwich, laminaribiose; HET: BGC; 1.0A {Clostridium stercorarium} SCOP: b.18.1.10 PDB: 1nae_A* 1o8s_A* 1o8p_A
Probab=10.87 E-value=1.8e+02 Score=26.05 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.6
Q ss_pred eEEEEECCCCceeEEEEeec
Q 011231 35 QLRIVFSPDLKICSWEFCAR 54 (490)
Q Consensus 35 tLRa~FdpdLKIEswEF~t~ 54 (490)
.|++.|.-.+.|+||+|...
T Consensus 147 dLylvf~G~~nldw~~F~~~ 166 (168)
T 1od3_A 147 DIVLVFSGPVNVDWFVFSKS 166 (168)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEECCcEEEEEEEEeC
Confidence 78899998999999999754
No 10
>2v4v_A GH59 galactosidase; hydrolase, family 6 carbohydrate binding module, CCCBM6; HET: XYP; 1.50A {Clostridium cellulolyticum}
Probab=10.86 E-value=1.6e+02 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.474 Sum_probs=15.4
Q ss_pred eeEEEEECCC----CceeEEEEe
Q 011231 34 GQLRIVFSPD----LKICSWEFC 52 (490)
Q Consensus 34 GtLRa~Fdpd----LKIEswEF~ 52 (490)
-.||+.|... ..|+||+|.
T Consensus 106 h~l~l~f~g~~~~~~nld~~~f~ 128 (129)
T 2v4v_A 106 HDVYLVFKGDSGYLFNLNWFTFS 128 (129)
T ss_dssp EEEEEEEECSSSCCCEEEEEEEE
T ss_pred EEEEEEEECCCCceEEEEEEEEE
Confidence 3688888765 899999996
Done!