Query 011231
Match_columns 490
No_of_seqs 109 out of 120
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 03:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uxxx_ b.18.1.10 (X:) Carbohy 24.0 27 0.002 27.3 3.4 20 35-54 105-124 (125)
2 d1od3a_ b.18.1.10 (A:) Putativ 20.4 34 0.0025 26.7 3.3 20 35-54 112-131 (132)
3 d1ohpa1 d.17.4.3 (A:1-125) Del 19.8 1.2E+02 0.0086 21.7 6.2 23 28-50 91-113 (125)
4 d1nn4a_ c.121.1.1 (A:) Alterna 15.7 13 0.00097 31.8 -0.4 21 422-442 80-103 (159)
5 d1uy4a_ b.18.1.10 (A:) Putativ 14.2 58 0.0042 25.5 3.3 20 35-54 112-131 (132)
6 d1t01a2 a.24.9.1 (A:126-252) V 13.2 21 0.0016 29.4 0.3 25 125-149 14-38 (127)
7 d3dxoa1 d.17.4.19 (A:1-117) Un 12.8 1.9E+02 0.014 21.1 6.0 31 19-49 79-111 (117)
8 d1ft9a2 b.82.3.1 (A:2-133) CO- 12.5 2E+02 0.015 21.4 6.1 46 6-51 17-66 (132)
9 d1doqa_ a.60.3.1 (A:) C-termin 11.8 17 0.0013 27.0 -0.7 41 113-155 6-51 (69)
10 d1z3eb1 a.60.3.1 (B:245-311) C 11.5 29 0.0021 25.7 0.5 40 113-154 5-49 (67)
No 1
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]}
Probab=23.98 E-value=27 Score=27.26 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.4
Q ss_pred eEEEEECCCCceeEEEEeec
Q 011231 35 QLRIVFSPDLKICSWEFCAR 54 (490)
Q Consensus 35 tLRa~FdpdLKIEswEF~t~ 54 (490)
+||+.|+-...|++|+|...
T Consensus 105 ~l~l~~~g~~Nid~~~F~~~ 124 (125)
T d1uxxx_ 105 DLYLVFSGPVNIDYFIFDSN 124 (125)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEeCCceEEEEEEEeC
Confidence 38999988999999999864
No 2
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=20.37 E-value=34 Score=26.67 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=17.3
Q ss_pred eEEEEECCCCceeEEEEeec
Q 011231 35 QLRIVFSPDLKICSWEFCAR 54 (490)
Q Consensus 35 tLRa~FdpdLKIEswEF~t~ 54 (490)
+||++|+-...|++|+|.-.
T Consensus 112 ~l~l~~~g~~nld~~~f~~~ 131 (132)
T d1od3a_ 112 DIVLVFSGPVNVDWFVFSKS 131 (132)
T ss_dssp EEEEEESSCCEEEEEEEECC
T ss_pred EEEEEEeCCceEEEEEEEeC
Confidence 68888998999999999743
No 3
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI {Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285]}
Probab=19.79 E-value=1.2e+02 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=19.4
Q ss_pred eEEEEeeeEEEEECCCCceeEEE
Q 011231 28 LRVVRDGQLRIVFSPDLKICSWE 50 (490)
Q Consensus 28 ~qVV~~GtLRa~FdpdLKIEswE 50 (490)
-.+..+|.-.+.|+.|.||..|.
T Consensus 91 ~~~~~~~~~~~~~d~dGkI~~~~ 113 (125)
T d1ohpa1 91 RKTVVAPIDHFRFNGAGKVVSMR 113 (125)
T ss_dssp EEEEECCEEEEEECTTSCEEEEE
T ss_pred ceEEEEEEEEEEECCCCeEEEEE
Confidence 77778888899999999998654
No 4
>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}
Probab=15.67 E-value=13 Score=31.79 Aligned_cols=21 Identities=43% Similarity=0.680 Sum_probs=17.8
Q ss_pred CCCCCchhhhh---hhhhhccCCc
Q 011231 422 GGGLGQSAMVN---GIRAAMGNNS 442 (490)
Q Consensus 422 g~g~g~~~~~n---g~~~~~~nn~ 442 (490)
|-|+|.+.++| |||||+.++-
T Consensus 80 GtG~G~~IaANK~~GIRAa~~~d~ 103 (159)
T d1nn4a_ 80 GTGVGISIAANKFAGIRAVVCSEP 103 (159)
T ss_dssp SSSHHHHHHHHTSTTCCEEECSSH
T ss_pred CCchHHHHHHHhccCceeeeecch
Confidence 56899999999 9999988654
No 5
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]}
Probab=14.24 E-value=58 Score=25.48 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=17.3
Q ss_pred eEEEEECCCCceeEEEEeec
Q 011231 35 QLRIVFSPDLKICSWEFCAR 54 (490)
Q Consensus 35 tLRa~FdpdLKIEswEF~t~ 54 (490)
+||+.|.-...|++|+|.-.
T Consensus 112 ~l~l~~~g~~nid~~~F~~~ 131 (132)
T d1uy4a_ 112 DIVLVFSGPVNVDNFIFSRS 131 (132)
T ss_dssp EEEEEESSCCEEEEEEEEEC
T ss_pred EEEEEEECCceEEEEEEEeC
Confidence 68899998999999999743
No 6
>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.23 E-value=21 Score=29.40 Aligned_cols=25 Identities=36% Similarity=0.684 Sum_probs=22.0
Q ss_pred ccchhhhhHHHHHhchHHHHHHhhc
Q 011231 125 KRYVRCLQISEVVNSMKDLIDYSRV 149 (490)
Q Consensus 125 krvmRcLEIAEVVnqMkDLm~FS~~ 149 (490)
+.+..+|+.+|++..|.||..|.++
T Consensus 14 ~~V~~~L~~~e~v~s~~dLv~~~k~ 38 (127)
T d1t01a2 14 KGILEYLTVAEVVETMEDLVTYTKN 38 (127)
T ss_dssp HHHHHHHTTTTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4677889999999999999999873
No 7
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=12.84 E-value=1.9e+02 Score=21.07 Aligned_cols=31 Identities=10% Similarity=-0.093 Sum_probs=22.8
Q ss_pred eeEEEEeec--eEEEEeeeEEEEECCCCceeEE
Q 011231 19 AIQESVFEQ--LRVVRDGQLRIVFSPDLKICSW 49 (490)
Q Consensus 19 As~~y~Fen--~qVV~~GtLRa~FdpdLKIEsw 49 (490)
+.+++.|.. -.++.+|.=.+.|+.+.||..+
T Consensus 79 ~~~~w~~~~~~~~~~~~G~d~~~~~~dGkI~~~ 111 (117)
T d3dxoa1 79 TRFSWRLISPDGDDVAGGTDVVSLNTEGRIDNV 111 (117)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEECTTSSEEEE
T ss_pred EEEEEEEecCCCCeEEEEEEEEEECCCCCEEEE
Confidence 334444444 5577899999999999999765
No 8
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=12.50 E-value=2e+02 Score=21.45 Aligned_cols=46 Identities=24% Similarity=0.096 Sum_probs=33.5
Q ss_pred ccCCCcEEEEecceeEEEEeec----eEEEEeeeEEEEECCCCceeEEEE
Q 011231 6 QNASGQIVLDYAKAIQESVFEQ----LRVVRDGQLRIVFSPDLKICSWEF 51 (490)
Q Consensus 6 ~LpNG~~vVE~~KAs~~y~Fen----~qVV~~GtLRa~FdpdLKIEswEF 51 (490)
.+-++.-+..|.|-..+++-.. +.+|.+|.+|+....+.|=..+.|
T Consensus 17 ~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~ 66 (132)
T d1ft9a2 17 TFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFY 66 (132)
T ss_dssp TTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEE
T ss_pred HHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecc
Confidence 3556678888888888888655 999999999988766554333333
No 9
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=11.82 E-value=17 Score=26.97 Aligned_cols=41 Identities=24% Similarity=0.578 Sum_probs=30.5
Q ss_pred ccCCccCCCCCcccchhhhhHHHHHhchHHHHHHhh-----ccCCChH
Q 011231 113 LEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSR-----VTGTGPM 155 (490)
Q Consensus 113 ldlP~VNe~GvpkrvmRcLEIAEVVnqMkDLm~FS~-----~p~LGPi 155 (490)
++.| |.+++++.|+++||.=+. |.-..||+.++. =+++|+.
T Consensus 6 L~~~-I~~L~LS~R~~N~L~~~g-I~tv~dL~~~s~~dLl~i~n~G~k 51 (69)
T d1doqa_ 6 LDLP-LEELGLSTRVLHSLKEEG-IESVRALLALNLKDLKNIPGIGER 51 (69)
T ss_dssp CCCC-HHHHTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHTTSTTCCHH
T ss_pred hCCc-HHHcCCCHHHHHHHHHcC-CccHHHHHHCCHHHHHhCCCCCHH
Confidence 4455 788999999999998443 456788888766 4677763
No 10
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}
Probab=11.49 E-value=29 Score=25.65 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=28.1
Q ss_pred ccCCccCCCCCcccchhhhhHHHHHhchHHHHHHhh-----ccCCCh
Q 011231 113 LEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSR-----VTGTGP 154 (490)
Q Consensus 113 ldlP~VNe~GvpkrvmRcLEIAEVVnqMkDLm~FS~-----~p~LGP 154 (490)
++.| |.+++++.|++.||.=+. +.-..||..++. -+++|.
T Consensus 5 L~~~-I~~L~LS~R~~N~Lk~~~-I~tv~dL~~~s~~dLl~~~nfG~ 49 (67)
T d1z3eb1 5 LEMT-IEELDLSVRSYNCLKRAG-INTVQELANKTEEDMMKVRNLGR 49 (67)
T ss_dssp HTCB-GGGSCCBHHHHHHHHHTT-CCBHHHHHTSCHHHHHTSTTCCH
T ss_pred hcCC-HHHhcCCHHHHHHHHHcC-CcCHHHHHHCCHHHHHhCCCCch
Confidence 4455 789999999999998443 455667766665 355664
Done!