BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011232
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/374 (27%), Positives = 181/374 (48%), Gaps = 35/374 (9%)
Query: 114 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 170
P+ IA+ S ++ ++ N + +L+ GH+S V A+SP D T ++W
Sbjct: 26 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 85
Query: 171 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 230
+NG L + H S V + ++ +G +A+ S D ++W+
Sbjct: 86 ----------RNGQLLQTLTGH--------SSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
NG L TL+ H ++ + ++ G + + S DKT +W+ + + Q HS V
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350
+ + S++D+ + ++T GH V V + P G +AS SDD T K
Sbjct: 187 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 351 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 410
+WN + + + L HS + + + P G +ASAS D TVKLW+ G+L
Sbjct: 247 LWN-RNGQLLQTLTGHSSSVNGVAFRPDGQ---------TIASASDDKTVKLWNRN-GQL 295
Query: 411 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNK 469
L +L GH V+ +AFSP G+ +AS S DK++ +W+ + G+ ++T TG + ++ V ++
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSP 354
Query: 470 EGDKIAACFANHTV 483
+G IA+ + TV
Sbjct: 355 DGQTIASASDDKTV 368
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 32/347 (9%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
LE H+S V A+SP D T ++W +NG L + H
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN----------RNGQLLQTLTGH----- 56
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL 257
S V + ++ +G +A+ S D ++W+ NG L TL+ H + + ++ G +
Sbjct: 57 ---SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 258 LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 317
+ S DKT +W+ + + Q HS V + + S++D+ +
Sbjct: 114 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL 172
Query: 318 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 377
++T GH V V + P G +AS SDD T K+WN + + + L HS + + +SP
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 378 TGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGS 437
G +ASAS D TVKLW+ G+LL +L GH V +AF P G+ +AS S
Sbjct: 232 DGQ---------TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 438 LDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV 483
DK++ +W+ + G++++T TG + ++ V ++ +G IA+ + TV
Sbjct: 282 DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 160/335 (47%), Gaps = 33/335 (9%)
Query: 114 PEPMDIATTSASESFEIPNSDVTILE---GHTSEVCACAWSPXXXXXXXXXXDSTARIWT 170
P+ IA+ S ++ ++ N + +L+ GH+S V A+SP D T ++W
Sbjct: 272 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Query: 171 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 230
+NG +H++ T S V + ++ +G +A+ S D ++W+
Sbjct: 332 ----------RNG-------QHLQTLTGHSSS-VWGVAFSPDGQTIASASDDKTVKLWNR 373
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
NG L TL+ H + + ++ G + + S DKT +W+ + + Q HS V
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 432
Query: 291 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350
+ + S++D+ + ++T GH V V + P G +AS SDD T K
Sbjct: 433 AFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492
Query: 351 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 410
+WN + + + L HS + + +SP G +ASAS D TVKLW+ G+L
Sbjct: 493 LWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ---------TIASASDDKTVKLWNRN-GQL 541
Query: 411 LYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
L +L GH V+ +AFSP G+ +AS S DK++ +W
Sbjct: 542 LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 148/291 (50%), Gaps = 14/291 (4%)
Query: 194 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 253
+ R S V + ++ +G +A+ S D ++W+ NG L TL+ H ++ + ++
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 254 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 313
G + + S DKT +W+ + + Q HS V + + S++D+
Sbjct: 69 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 314 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373
+ ++T GH V V + P G +AS SDD T K+WN + + + L HS ++ +
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 186
Query: 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 433
+SP G +ASAS D TVKLW+ G+LL +L GH V +AFSP G+ +
Sbjct: 187 AFSPDGQ---------TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 434 ASGSLDKSMHIWSLKEGKIVKTYTG-NGGIFEVCWNKEGDKIAACFANHTV 483
AS S DK++ +W+ + G++++T TG + + V + +G IA+ + TV
Sbjct: 237 ASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 166/378 (43%), Gaps = 54/378 (14%)
Query: 145 VCACAWSPXXXXXXXX-XXDSTARIWTIADGTSNGGAQNGPLNVLV-LKH---VKGRTNE 199
+ + W+P +S AR+ I + T G + L ++ L+H + + +
Sbjct: 48 IVSSTWNPLDESILAYGEKNSVARLARIVE-TDQEGKKYWKLTIIAELRHPFALSASSGK 106
Query: 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+ VT L W+ +G + TG +G+ R+W+ G L L+ H+ PI S+KWNK G ++++
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 260 GSCDKTAIVWDVKTEEWKQQFEF------------HSGP---TLDVDWRNNVSFATSSTD 304
+ I+W+V + Q FE HSG +DV+W ++ F
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226
Query: 305 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364
I+V +I E P GH G ++ ++++ T LL S SDD T +IW+ +
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424
HS+ I + W + ++I S S D +V+LW ++ LL P+++
Sbjct: 287 GHSQSIVSASWV--------GDDKVI--SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG 336
Query: 425 AFSPTGEYLASGSLDKSMHIWSLKE--GKIVKTYTGNGG--------------------- 461
S G+ A +D ++++ LK+ K Y G
Sbjct: 337 RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDY 396
Query: 462 IFEVCWNKEGDKIAACFA 479
IF++ WN G+KI+ ++
Sbjct: 397 IFDLSWNCAGNKISVAYS 414
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 155
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 206
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 141/289 (48%), Gaps = 13/289 (4%)
Query: 176 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDL 234
S+ Q+ P V +K +K V+++ ++ G LA+ S D +IW + +G
Sbjct: 22 SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 81
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294
+ T+S HK I + W+ + L++ S DKT +WDV + + + + HS ++
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 295 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353
+ S S D + + + + +KT H V+ V ++ GSL+ S S D +IW+
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 413
+ + L + P +PN + ILA A+ D+T+KLWD GK L +
Sbjct: 202 TASGQCLKTLIDDDNP-------PVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 253
Query: 414 LNGHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
GH+ Y + FS TG +++ SGS D ++IW+L+ +IV+ G+
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 155/359 (43%), Gaps = 40/359 (11%)
Query: 95 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTI-LEGHTSEVCACAWSPX 153
EEK KPE P P AT S + PN + L GHT V + +SP
Sbjct: 6 EEK---KPETEA---ARAQPTPSSSATQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPN 58
Query: 154 XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213
D +IW GA +G + H G ++ + W+ +
Sbjct: 59 GEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG--------ISDVAWSSDS 101
Query: 214 TLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 272
LL + S D +IW ++G TL H +F +N + + +++GS D++ +WDVK
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 273 TEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNC 330
T + + HS P V + R+ +SS D + + + +KT V+
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 331 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI--RWSPTGSGTNNPNQQ 388
VK+ P G + + + D T K+W+ + K + H E Y I +S TG
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK------- 274
Query: 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL--DKSMHIW 445
+ S S D+ V +W+++ +++ L GH + V S A PT +AS +L DK++ +W
Sbjct: 275 -WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 122 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 233 AATLDNTLKLWDY 245
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 98
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 99 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 190
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 99 SDSNLLVSASDDKTLKIWD 117
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 153
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 204
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 142/292 (48%), Gaps = 13/292 (4%)
Query: 176 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDL 234
S+ Q+ P V +K +K V+++ ++ G LA+ S D +IW + +G
Sbjct: 20 SSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 79
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294
+ T+S HK I + W+ + L++ S DKT +WDV + + + + HS ++
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 295 NVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353
+ S S D + + + + +KT H V+ V ++ GSL+ S S D +IW+
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 413
+ + L + P +PN + ILA A+ D+T+KLWD GK L +
Sbjct: 200 TASGQCLKTLIDDDNP-------PVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKT 251
Query: 414 LNGHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 462
GH+ Y + FS TG +++ SGS D ++IW+L+ +IV+ G+ +
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 155/359 (43%), Gaps = 40/359 (11%)
Query: 95 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTI-LEGHTSEVCACAWSPX 153
EEK KPE P P AT S + PN + L GHT V + +SP
Sbjct: 4 EEK---KPETEA---ARAQPTPSSSATQSKPTPVK-PNYALKFTLAGHTKAVSSVKFSPN 56
Query: 154 XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 213
D +IW GA +G + H G ++ + W+ +
Sbjct: 57 GEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG--------ISDVAWSSDS 99
Query: 214 TLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 272
LL + S D +IW ++G TL H +F +N + + +++GS D++ +WDVK
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 273 TEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNC 330
T + + HS P V + R+ +SS D + + + +KT V+
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 331 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI--RWSPTGSGTNNPNQQ 388
VK+ P G + + + D T K+W+ + K + H E Y I +S TG
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK------- 272
Query: 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL--DKSMHIW 445
+ S S D+ V +W+++ +++ L GH + V S A PT +AS +L DK++ +W
Sbjct: 273 -WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 120 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 231 AATLDNTLKLWDY 243
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 96
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 97 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 97 SDSNLLVSASDDKTLKIWD 115
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 198
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 199 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 33/326 (10%)
Query: 128 FEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLN 186
F PN + L GHT V + +SP D +IW GA +G
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFE 61
Query: 187 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPI 245
+ H G ++ + W+ + LL + S D +IW ++G TL H +
Sbjct: 62 KTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTD 304
F +N + + +++GS D++ +WDVKT + + HS P V + R+ +SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 305 NMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
+ + + +KT V+ VK+ P G + + + D T K+W+ + K +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 364 REHSKEIYTI--RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 421
H E Y I +S TG + S S D+ V +W+++ +++ L GH + V
Sbjct: 234 TGHKNEKYCIFANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Query: 422 YSLAFSPTGEYLASGSL--DKSMHIW 445
S A PT +AS +L DK++ ++
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLY 311
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 78 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 78 SDSNLLVSASDDKTLKIWD 96
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 198
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 199 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 33/326 (10%)
Query: 128 FEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLN 186
F PN + L GHT V + +SP D +IW GA +G
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFE 61
Query: 187 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPI 245
+ H G ++ + W+ + LL + S D +IW ++G TL H +
Sbjct: 62 KTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTD 304
F +N + + +++GS D++ +WDVKT + + HS P V + R+ +SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 305 NMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
+ + + +KT V+ VK+ P G + + + D T K+W+ + K +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 364 REHSKEIYTI--RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 421
H E Y I +S TG + S S D+ V +W+++ +++ L GH + V
Sbjct: 234 TGHKNEKYCIFANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Query: 422 YSLAFSPTGEYLASGSL--DKSMHIW 445
S A PT +AS +L DK++ ++
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLF 311
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 78 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 78 SDSNLLVSASDDKTLKIWD 96
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 148
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 199
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 13/286 (4%)
Query: 179 GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCT 237
G Q+ P V +K +K V+++ ++ G LA+ S D +IW + +G + T
Sbjct: 18 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 77
Query: 238 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297
+S HK I + W+ + L++ S DKT +WDV + + + + HS ++ +
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 298 FATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356
S S D + + + + +KT H V+ V ++ GSL+ S S D +IW+
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 416
+ + L + P +PN + ILA A+ D+T+KLWD GK L + G
Sbjct: 198 GQCLKTLIDDDNP-------PVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTG 249
Query: 417 HREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
H+ Y + FS TG +++ SGS D ++IW+L+ +IV+ G+
Sbjct: 250 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 46/355 (12%)
Query: 100 SKPEENGVLQGEKG-PEPMDIATTSASESFEIPNSDVTI-LEGHTSEVCACAWSPXXXXX 157
S EN QG + P P+ PN + L GHT V + +SP
Sbjct: 8 SSGRENLYFQGTQSKPTPVK------------PNYALKFTLAGHTKAVSSVKFSPNGEWL 55
Query: 158 XXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 217
D +IW GA +G + H G ++ + W+ + LL
Sbjct: 56 ASSSADKLIKIW---------GAYDGKFEKTISGHKLG--------ISDVAWSSDSNLLV 98
Query: 218 TGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 276
+ S D +IW ++G TL H +F +N + + +++GS D++ +WDVKT +
Sbjct: 99 SASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 158
Query: 277 KQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWD 334
+ HS P V + R+ +SS D + + + +KT V+ VK+
Sbjct: 159 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 335 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI--RWSPTGSGTNNPNQQLILA 392
P G + + + D T K+W+ + K + H E Y I +S TG +
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK--------WIV 270
Query: 393 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSL--DKSMHIW 445
S S D+ V +W+++ +++ L GH + V S A PT +AS +L DK++ +W
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 115 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 226 AATLDNTLKLWDY 238
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 300 TSSTDNMIYVCKIGENRPIK-------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352
+S +N+ + + P+K T AGH V+ VK+ P G LAS S D KIW
Sbjct: 8 SSGRENLYFQGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
Query: 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY 412
K+ + H I + WS S +N +L SAS D T+K+WDV GK L
Sbjct: 68 GAYDGKFEKTISGHKLGISDVAWS---SDSN------LLVSASDDKTLKIWDVSSGKCLK 118
Query: 413 SLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEG 471
+L GH V+ F+P + SGS D+S+ IW +K GK +KT + + V +N++G
Sbjct: 119 TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG 178
Query: 472 DKIAA 476
I +
Sbjct: 179 SLIVS 183
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 136
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 187
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 140/291 (48%), Gaps = 13/291 (4%)
Query: 174 GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNG 232
G Q+ P V +K +K V+++ ++ G LA+ S D +IW + +G
Sbjct: 1 GAMGSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 60
Query: 233 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292
+ T+S HK I + W+ + L++ S DKT +WDV + + + + HS ++
Sbjct: 61 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 120
Query: 293 RNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 351
+ S S D + + + + +KT H V+ V ++ GSL+ S S D +I
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 352 WNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLL 411
W+ + + L + P +PN + ILA A+ D+T+KLWD GK L
Sbjct: 181 WDTASGQCLKTLIDDDNP-------PVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCL 232
Query: 412 YSLNGHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
+ GH+ Y + FS TG +++ SGS D ++IW+L+ +IV+ G+
Sbjct: 233 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 72
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 73 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 246
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 247 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 298
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 299 IASAALENDKTIKLW 313
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 103 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 214 AATLDNTLKLWDY 226
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 79
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 80 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 171
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 80 SDSNLLVSASDDKTLKIWD 98
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 201
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 202 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 73
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 74 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 248 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 300 IASAALENDKTIKLW 314
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 81 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 81 SDSNLLVSASDDKTLKIWD 99
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 201
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 202 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 149/338 (44%), Gaps = 33/338 (9%)
Query: 116 PMDIATTSASESFEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 174
P+ + T + + PN + L GHT V + +SP D +IW
Sbjct: 2 PLGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW----- 56
Query: 175 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGD 233
GA +G + H G ++ + W+ + LL + S D +IW ++G
Sbjct: 57 ----GAYDGKFEKTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGK 104
Query: 234 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 292
TL H +F +N + + +++GS D++ +WDVKT + + HS P V +
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 293 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKI 351
R+ +SS D + + + +KT V+ VK+ P G + + + D T K+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 352 WNMKQDKYVHDLREHSKEIYTI--RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
W+ + K + H E Y I +S TG + S S D+ V +W+++ +
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK--------WIVSGSEDNLVYIWNLQTKE 276
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSL--DKSMHIW 445
++ L GH + V S A PT +AS +L DK++ +W
Sbjct: 277 IVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 81 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 81 SDSNLLVSASDDKTLKIWD 99
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 182
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 142
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 143 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 195
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 196 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 255 GSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 67
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 68 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 242 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 294 IASAALENDKTIKLW 308
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 98 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 209 AATLDNTLKLWDY 221
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 74
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 75 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 75 SDSNLLVSASDDKTLKIWD 93
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 137
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 188
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 148
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 149 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 201
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 202 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 260
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 261 GSEDNLVYIWNLQTKEIVQKLQGH 284
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 73
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 74 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 248 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 300 IASAALENDKTIKLW 314
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 104 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 215 AATLDNTLKLWDY 227
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 80
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 81 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 81 SDSNLLVSASDDKTLKIWD 99
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 130
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 181
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 82 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 141
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 142 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 194
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 195 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 253
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 254 GSEDNLVYIWNLQTKEIVQKLQGH 277
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 66
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 67 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 241 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 292
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 293 IASAALENDKTIKLW 307
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 97 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 208 AATLDNTLKLWDY 220
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 73
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 74 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 165
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 74 SDSNLLVSASDDKTLKIWD 92
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 131
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 182
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 140/286 (48%), Gaps = 13/286 (4%)
Query: 179 GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCT 237
G Q+ P V +K +K V+++ ++ G LA+ S D +IW + +G + T
Sbjct: 1 GTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 60
Query: 238 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297
+S HK I + W+ + L++ S DKT +WDV + + + + HS ++ +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 298 FATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356
S S D + + + + +KT H V+ V ++ GSL+ S S D +IW+
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNG 416
+ + L + P +PN + ILA A+ D+T+KLWD GK L + G
Sbjct: 181 GQCLKTLIDDDNP-------PVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTG 232
Query: 417 HREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
H+ Y + FS TG +++ SGS D ++IW+L+ +IV+ G+
Sbjct: 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 67
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 68 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 242 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 294 IASAALENDKTIKLW 308
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 98 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 209 AATLDNTLKLWDY 221
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 74
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 75 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 75 SDSNLLVSASDDKTLKIWD 93
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 132
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 183
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 140/287 (48%), Gaps = 13/287 (4%)
Query: 178 GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKC 236
G Q+ P V +K +K V+++ ++ G LA+ S D +IW + +G +
Sbjct: 1 GSTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 60
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
T+S HK I + W+ + L++ S DKT +WDV + + + + HS ++
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 120
Query: 297 SFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355
+ S S D + + + + +KT H V+ V ++ GSL+ S S D +IW+
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 356 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 415
+ + L + P +PN + ILA A+ D+T+KLWD GK L +
Sbjct: 181 SGQCLKTLIDDDNP-------PVSFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYT 232
Query: 416 GHREPVYSLA--FSPTG-EYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
GH+ Y + FS TG +++ SGS D ++IW+L+ +IV+ G+
Sbjct: 233 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 68
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 69 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 242
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 243 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 294
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 295 IASAALENDKTIKLW 309
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 99 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 210 AATLDNTLKLWDY 222
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 75
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 76 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 167
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 76 SDSNLLVSASDDKTLKIWD 94
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 127
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 178
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 133/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 138
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 139 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 191
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 192 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 250
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 251 GSEDNLVYIWNLQTKEIVQKLQGH 274
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 63
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 64 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + + HS P V + R+ +SS D + +
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 237
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 238 ANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 289
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 290 IASAALENDKTIKLW 304
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 94 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 205 AATLDNTLKLWDY 217
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 70
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 71 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 162
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 71 SDSNLLVSASDDKTLKIWD 89
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N LK TL+ H + S+K++ G++L S DK +W ++++ H DV
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 26 TKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + + +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL 145
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 198
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 199 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 258 GSEDNLVYIWNLQTKEIVQKLQGH 281
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 144/326 (44%), Gaps = 33/326 (10%)
Query: 128 FEIPNSDVTI-LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLN 186
F PN + L GHT V + +SP D +IW GA +G
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW---------GAYDGKFE 61
Query: 187 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPI 245
+ H G ++ + W+ + LL + S D +IW ++G TL H +
Sbjct: 62 KTISGHKLG--------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTD 304
F +N + + +++GS D++ +WDVKT + + HS P V + R+ +SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 305 NMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
+ + + +KT V+ VK+ P G + + + D T K+W+ + K +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 364 REHSKEIYTI--RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPV 421
H E Y I +S TG + S S D+ V +W+++ +++ L GH + V
Sbjct: 234 TGHKNEKYCIFANFSVTGGK--------WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Query: 422 YSLAFSPTGEYLASGSL--DKSMHIW 445
S A PT +AS +L DK++ +W
Sbjct: 286 ISTACHPTENIIASAALENDKTIKLW 311
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ GK L +L H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LA+ S D KIW K+ + H I + WS
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 78 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K GK +KT + + V +N++G I +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L ++L GH + V S+ FSP GE+LA+ S DK + IW +GK KT +G+ GI +V W+
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 78 SDSNLLVSASDDKTLKIWD 96
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 121/248 (48%), Gaps = 57/248 (22%)
Query: 207 LDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSK-HKGPIFSLKWNKKGDYLLTGSC 262
L WN GTLLA+ D + RIW T GD K LS+ H+ + + W+ G+YL + S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 322
D T +W K Q +F + T
Sbjct: 82 DATTCIWK------KNQDDFEC---------------------------------VTTLE 102
Query: 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKY--VHDLREHSKEIYTIRWSPTG 379
GH+ EV V W P+G+LLA+CS D + +W + ++D+Y V L H++++ + W P+
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS- 161
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLL--YSLNGHREPVYSLAFSPTGEYLASGS 437
Q +LASAS+D TVKL+ E + +L GH V+SLAF P+G+ LAS S
Sbjct: 162 --------QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 213
Query: 438 LDKSMHIW 445
D+++ IW
Sbjct: 214 DDRTVRIW 221
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGS 380
GHQ V V W P G+ LAS S D T IW QD + V L H E+ ++ W+P+G+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELG---KLLYSLNGHREPVYSLAFSPTGEYLASGS 437
+LA+ S D +V +W+V+ + + LN H + V + + P+ E LAS S
Sbjct: 119 ---------LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 438 LDKSMHIWSLKEGKIVKTYTGNG---GIFEVCWNKEGDKIAACFANHTV 483
D ++ ++ +E V T G ++ + ++ G ++A+C + TV
Sbjct: 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 14/124 (11%)
Query: 331 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD--LRE-HSKEIYTIRWSPTGSGTNNPNQ 387
+ W+P G+LLASC D +IW + D ++ L E H + + + WSP G+
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN------- 74
Query: 388 QLILASASFDSTVKLW--DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
LASASFD+T +W + + + + +L GH V S+A++P+G LA+ S DKS+ +W
Sbjct: 75 --YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 446 SLKE 449
+ E
Sbjct: 133 EVDE 136
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 108/252 (42%), Gaps = 44/252 (17%)
Query: 135 VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 194
VT LEGH +EV + AW+P D + +W + + ++ V VL
Sbjct: 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE-------EDEYECVSVL---- 146
Query: 195 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKC-TLSKHKGPIFSLKWN 251
N ++DV + W+ LLA+ SYD +++ D + C TL H+ ++SL ++
Sbjct: 147 ---NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 252 KKGDYLLTGSCDKTAIVWDV-------------KTEEWKQQFE---FHSGPTLDVDW-RN 294
G L + S D+T +W WK FHS D+ W +
Sbjct: 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263
Query: 295 NVSFATSSTDNMIYVCKIGENRPIK--TFA-------GHQGEVNCVKWDPT-GSLLASCS 344
+ AT+ D+ I V + N + TF+ H +VNCV W+P LLASCS
Sbjct: 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323
Query: 345 DDVTAKIWNMKQ 356
DD W ++
Sbjct: 324 DDGEVAFWKYQR 335
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 262
VT + ++ +++ + S D ++W GD + TL H + + ++ G L + S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 263 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTF 321
D T +WD + E + H V N ++S D I + ++ +KTF
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP---- 377
GH+ V V+ + G+L+ASCS+D T ++W + + +LREH + I W+P
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290
Query: 378 ------TGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTG 430
TGS T + L S S D T+K+WDV G L +L GH V + F G
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 431 EYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
+++ S + DK++ +W K + +KT +
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 96/173 (55%), Gaps = 12/173 (6%)
Query: 316 RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373
RP + +A GH+ V V + P S++ S S+D T K+W+ + + L+ H+ + I
Sbjct: 97 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 156
Query: 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 433
+ +G +LAS S D T+KLWD + + + +++GH V S++ P G+++
Sbjct: 157 SFDHSGK---------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 434 ASGSLDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCV 485
S S DK++ +W ++ G VKT+TG+ + V N++G IA+C + TV V
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 33/278 (11%)
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 294
K LS H+ P+ + ++ +++ S D T VWD +T ++++ + H+ D+ + +
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 295 NVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353
+ A+ S D I + I+T GH V+ V P G + S S D T K+W
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ-LILASASFDSTVKLWDVELGKLLY 412
++ V H + + +R PNQ ++AS S D TV++W V +
Sbjct: 221 VQTGYCVKTFTGHREWVRMVR----------PNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 413 SLNGHREPVYSLAFSPT--------------------GEYLASGSLDKSMHIWSLKEGKI 452
L HR V ++++P G +L SGS DK++ +W + G
Sbjct: 271 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330
Query: 453 VKTYTGNGG-IFEVCWNKEGDKIAACFANHTVCVLDFR 489
+ T G+ + V ++ G I +C + T+ V D++
Sbjct: 331 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 100/291 (34%), Gaps = 88/291 (30%)
Query: 135 VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 194
+ + GH V + + P D T ++W + G VK
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC----------------VK 228
Query: 195 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKW--- 250
T + V + N +GTL+A+ S D R+W + K L +H+ + + W
Sbjct: 229 TFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Query: 251 -----------------NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293
K G +LL+GS DKT +WDV T
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG------------------- 328
Query: 294 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353
+C + T GH V V + G + SC+DD T ++W+
Sbjct: 329 ---------------MC-------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Query: 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 404
K + + L H + ++ + T + + S D TVK+W+
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAP---------YVVTGSVDQTVKVWE 408
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N L TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD ++ +W +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 132/264 (50%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 198
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+T+KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 199 SFVKFSPNGKYILA-ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 139/315 (44%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 70
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 71 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + HS P V + R+ +SS D + +
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D T K+W+ + K + H E Y I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 245 ANFSVTGGK--------WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 297 IASAALENDKTIKLW 311
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 11/193 (5%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+SS D +I + + + KT +GH+ ++ V W +LL S SDD T KIW++
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K + L+ HS ++ ++P Q ++ S SFD +V++WDV+ G L +L H
Sbjct: 101 KCLKTLKGHSNYVFCCNFNP---------QSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT--GNGGIFEVCWNKEGDKIA 475
+PV ++ F+ G + S S D IW G+ +KT N + V ++ G I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 476 ACFANHTVCVLDF 488
A ++T+ + D+
Sbjct: 212 AATLDNTLKLWDY 224
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 78 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K G +KT + + V +N++G I +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L+++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 78 SDSNLLVSASDDKTLKIWD 96
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
N L TL+ H + S+K++ G++L + S DK +W ++++ H DV
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 291 DWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 349
W ++ + S++D+ + + + + +KT GH V C ++P +L+ S S D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 350 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
+IW++K + L HS + + ++ GS ++ S+S+D ++WD G+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS---------LIVSSSYDGLCRIWDTASGQ 185
Query: 410 LLYSL-NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGN 459
L +L + PV + FSP G+Y+ + +LD + +W +GK +KTYTG+
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 13/264 (4%)
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+K V+++ ++ G LA+ S D +IW + +G + T+S HK I + W+ + L++
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCKIGENRPI 318
S DKT +WDV + + + + HS ++ + S S D + + + +
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL 145
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
KT H V+ V ++ GSL+ S S D +IW+ + + L + P
Sbjct: 146 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP-------PV 198
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA--FSPTG-EYLAS 435
+PN + ILA A+ D+ +KLWD GK L + GH+ Y + FS TG +++ S
Sbjct: 199 SFVKFSPNGKYILA-ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 257
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
GS D ++IW+L+ +IV+ G+
Sbjct: 258 GSEDNMVYIWNLQTKEIVQKLQGH 281
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 32/315 (10%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GHT V + +SP D +IW GA +G + H G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIW---------GAYDGKFEKTISGHKLG-- 70
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDY 256
++ + W+ + LL + S D +IW ++G TL H +F +N + +
Sbjct: 71 ------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN 315
+++GS D++ +WDVKT + HS P V + R+ +SS D + +
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 316 RPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI- 373
+ +KT V+ VK+ P G + + + D K+W+ + K + H E Y I
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 374 -RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
+S TG + S S D+ V +W+++ +++ L GH + V S A PT
Sbjct: 245 ANFSVTGGK--------WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 433 LASGSL--DKSMHIW 445
+AS +L DK++ +W
Sbjct: 297 IASAALENDKTIKLW 311
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 320 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 379
T AGH V+ VK+ P G LAS S D KIW K+ + H I + WS
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--- 77
Query: 380 SGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
S +N +L SAS D T+K+WDV GK L +L GH V+ F+P + SGS D
Sbjct: 78 SDSN------LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 440 KSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAA 476
+S+ IW +K G +KT + + V +N++G I +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG-GIFEVCWN 468
L+++L GH + V S+ FSP GE+LAS S DK + IW +GK KT +G+ GI +V W+
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 469 KEGDKIAACFANHTVCVLD 487
+ + + + + T+ + D
Sbjct: 78 SDSNLLVSASDDKTLKIWD 96
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 123/263 (46%), Gaps = 27/263 (10%)
Query: 190 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFS 247
L+ + R+ E SK V L ++ + + +G D +IW N L+C L+ H G +
Sbjct: 123 LQRIHCRS-ETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNT-LECKRILTGHTGSVLC 178
Query: 248 LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 307
L+++++ ++TGS D T VWDV T E H L + + NN T S D I
Sbjct: 179 LQYDER--VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF-NNGMMVTCSKDRSI 235
Query: 308 YVCKIGENRPI---KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364
V + I + GH+ VN V +D + S S D T K+WN ++V L
Sbjct: 236 AVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN 293
Query: 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424
H + I +++ + ++ S S D+T++LWD+E G L L GH E V +
Sbjct: 294 GHKRGIACLQY-----------RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 425 AFSPTGEYLASGSLDKSMHIWSL 447
F + + SG+ D + +W L
Sbjct: 343 RFD--NKRIVSGAYDGKIKVWDL 363
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 70/144 (48%), Gaps = 18/144 (12%)
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
+ GH G V C+++D ++ + S D T ++W++ + ++ L H + + +R+
Sbjct: 167 RILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--- 221
Query: 379 GSGTNNPNQQLILASASFDSTVKLWDVELGK---LLYSLNGHREPVYSLAFSPTGEYLAS 435
NN ++ + S D ++ +WD+ L L GHR V + F +Y+ S
Sbjct: 222 ----NNG----MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVS 271
Query: 436 GSLDKSMHIWSLKEGKIVKTYTGN 459
S D+++ +W+ + V+T G+
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGH 295
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 19/247 (7%)
Query: 213 GTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 271
G + +GS D ++WS G TL H G ++S + + + +++GS D+T VW+
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 272 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 331
+T E H+ T+ + + S D + V I + + GH V CV
Sbjct: 187 ETGECIHTLYGHT-STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 332 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391
++D G + S + D K+W+ + + +H L+ H+ +Y++++ + +
Sbjct: 246 QYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG-----------IHV 292
Query: 392 ASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK 451
S S D+++++WDVE G +++L GH+ + L SG+ D ++ IW +K G+
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQ 350
Query: 452 IVKTYTG 458
++T G
Sbjct: 351 CLQTLQG 357
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 16/206 (7%)
Query: 254 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 313
G+ +++GS D T VW T + + H+G R+N+ + STD + V
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI-IISGSTDRTLKVWNAE 187
Query: 314 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 373
I T GH V C+ + S S D T ++W+++ + +H L H + +
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 374 RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL 433
++ + S ++D VK+WD E L++L GH VYSL F G ++
Sbjct: 246 QYDGRR-----------VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHV 292
Query: 434 ASGSLDKSMHIWSLKEGKIVKTYTGN 459
SGSLD S+ +W ++ G + T TG+
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGH 318
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 25/231 (10%)
Query: 216 LATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274
+ +GS D R+W G L H + ++++ G +++G+ D VWD +TE
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETE 269
Query: 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 334
+ H+ + + + + + S D I V + I T GHQ + + +
Sbjct: 270 TCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--E 326
Query: 335 PTGSLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQQLIL 391
++L S + D T KIW++K + + L+ +H + +++ N+ ++
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF----------NKNFVI 376
Query: 392 ASASFDSTVKLWDVELGKLLYSL-----NGHREPVYSLAFSPTGEYLASGS 437
S+ D TVKLWD++ G+ + +L G V+ + S T A GS
Sbjct: 377 TSSD-DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 414 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 461
L GH + V + G + SGS D ++ +WS GK ++T G+ G
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 160
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 122/261 (46%), Gaps = 41/261 (15%)
Query: 212 EGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 270
E + TG+ D R++ S N LS H G +++LK+ G L++GS D+T VWD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 271 VKTEEWKQQFEFHSGPT--LD-VDWRNNVSFATSSTDNMIYVCKIG-------------- 313
+K FE H+ LD V+++N T S DN ++V K+
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 314 -------ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364
E P + GH V V G+++ S S D T +W++ Q K ++ L
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Query: 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424
H+ IY+ T +++ SAS D+T+++WD+E G+L+Y+L GH V L
Sbjct: 308 GHTDRIYS---------TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 358
Query: 425 AFSPTGEYLASGSLDKSMHIW 445
S ++L S + D S+ W
Sbjct: 359 RLSD--KFLVSAAADGSIRGW 377
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 210 NGEGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 267
+G G ++ +GSYD +W +KC LS H I+S ++ + ++ S D T
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIR 335
Query: 268 VWDVKTEEWKQQFEFHSG 285
+WD++ E + H+
Sbjct: 336 IWDLENGELMYTLQGHTA 353
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 19/245 (7%)
Query: 213 GTLLATGSYDGQARIWSTNGDL-------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 265
G +A G D + ++ D K +++ H + + + +LT S D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 266 AIVWDVKTEEWKQQFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFA 322
+WDV++ + Q F H L +D +F + D V + + ++ F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 382
H+ +VN V++ P+G AS SDD T ++++++ D+ V IY+ G+ +
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV--------AIYSKESIIFGASS 289
Query: 383 NNPNQQLILASASF-DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 441
+ + L A + D T+ +WDV G + L GH V +L SP G SGS D +
Sbjct: 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
Query: 442 MHIWS 446
+ +W+
Sbjct: 350 LRVWA 354
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 109/267 (40%), Gaps = 29/267 (10%)
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
TL H + + W K +++ S D IVWD T + T+ W
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV------TMPCTWVMAC 112
Query: 297 SFATSST-------DN--MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPTGSLLASC 343
++A S DN +Y +N + K+ A H ++ + + + +
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 344 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403
S D T +W+++ + + H ++ + +P+ +G S D +W
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT-------FVSGGCDKKAMVW 225
Query: 404 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIF 463
D+ G+ + + H V S+ + P+G+ ASGS D + ++ L+ + V Y+ IF
Sbjct: 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285
Query: 464 ---EVCWNKEGDKIAACFANHTVCVLD 487
V ++ G + A + ++T+ V D
Sbjct: 286 GASSVDFSLSGRLLFAGYNDYTINVWD 312
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 79/213 (37%), Gaps = 42/213 (19%)
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 378
+T GH +V C+ W + S S D +W+ H + + ++P+
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 379 G---------------------------------------SGTNNPNQQLILASASFDST 399
G S + N + + +AS D T
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 400 VKLWDVELGKLLYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSLKEGKIVKTY- 456
LWDVE G+LL S +GH V L +P TG SG DK +W ++ G+ V+ +
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 457 TGNGGIFEVCWNKEGDKIAACFANHTVCVLDFR 489
T + V + GD A+ + T + D R
Sbjct: 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 82/217 (37%), Gaps = 21/217 (9%)
Query: 141 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 200
HT+ + AC+++ D T +W + G +VL L T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET--- 209
Query: 201 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
G +G D +A +W +G H+ + S+++ GD +
Sbjct: 210 ------------GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257
Query: 260 GSCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 315
GS D T ++D++ + + ++ ++D + FA D I V + +
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA-GYNDYTINVWDVLKG 316
Query: 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352
+ GH+ V+ ++ P G+ S S D T ++W
Sbjct: 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 121/261 (46%), Gaps = 41/261 (15%)
Query: 212 EGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 270
E + TG+ D R++ S N LS H G +++LK+ G L++GS D+T VWD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWD 189
Query: 271 VKTEEWKQQFEFHSGPT--LD-VDWRNNVSFATSSTDNMIYVCKIG-------------- 313
+K FE H+ LD V+++N T S DN ++V K+
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 314 -------ENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 364
E P + GH V V G+++ S S D T +W++ Q K ++ L
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILS 307
Query: 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424
H+ IY+ T +++ SAS D+T+++WD+E G+L Y+L GH V L
Sbjct: 308 GHTDRIYS---------TIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL 358
Query: 425 AFSPTGEYLASGSLDKSMHIW 445
S ++L S + D S+ W
Sbjct: 359 RLSD--KFLVSAAADGSIRGW 377
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 210 NGEGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 267
+G G ++ +GSYD +W KC LS H I+S ++ + ++ S D T
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDV-AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIR 335
Query: 268 VWDVKTEEWKQQFEFHSG 285
+WD++ E + H+
Sbjct: 336 IWDLENGELXYTLQGHTA 353
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 119/255 (46%), Gaps = 39/255 (15%)
Query: 241 HKGPIFSLKWNKKGDYLLTGSCDKTAIVW-------------DVKTEEWKQQFEFHSGPT 287
H + +K++ G+YL TG C+KT V+ D + + S P+
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 288 LDVDWRNNVSF-------ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 340
D+ R+ V F AT + D +I + I + + GH+ ++ + + P+G L
Sbjct: 122 SDLYIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 341 ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTV 400
S S D T +IW+++ + L + T+ SP G G +A+ S D V
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSP-GDGK-------YIAAGSLDRAV 231
Query: 401 KLWDVELGKLLYSLN-------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG-KI 452
++WD E G L+ L+ GH++ VYS+ F+ G+ + SGSLD+S+ +W+L+
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 453 VKTYTGNGGIFEVCW 467
+ T N G EV +
Sbjct: 292 SDSKTPNSGTCEVTY 306
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 137/336 (40%), Gaps = 36/336 (10%)
Query: 141 HTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGT------SNGGAQNGPLNVLVLKHVK 194
HTS VC +S + T +++ ++DG+ + A P N+
Sbjct: 63 HTSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENL------- 114
Query: 195 GRTNEKSKD--VTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWN 251
++ S D + ++ ++ +G LATG+ D RIW N + L H+ I+SL +
Sbjct: 115 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF 174
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTDNMIYVC 310
GD L++GS D+T +WD++T + G T+ V + A S D + V
Sbjct: 175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 311 KIGENRPIKTF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
++ GH+ V V + G + S S D + K+WN++ D
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 364 REHSKEIYTIRW----SPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 419
+ + + + S N + IL S S D V WD + G L L GHR
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGHRN 353
Query: 420 PVYSLAFS------PTGEYLASGSLDKSMHIWSLKE 449
V S+A + P A+GS D IW K+
Sbjct: 354 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 16/154 (10%)
Query: 337 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPNQQLILASA 394
GSL+A SDD A K + ++ S ++Y ++ +SP G LA+
Sbjct: 95 GSLVARLSDDSAAN----KDPENLNTSSSPSSDLYIRSVCFSPDGK---------FLATG 141
Query: 395 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454
+ D +++WD+E K++ L GH + +YSL + P+G+ L SGS D+++ IW L+ G+
Sbjct: 142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201
Query: 455 TYTGNGGIFEVCWNK-EGDKIAACFANHTVCVLD 487
T + G+ V + +G IAA + V V D
Sbjct: 202 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 46/250 (18%)
Query: 135 VTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 194
V IL+GH ++ + + P D T RIW + G + L L
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS----------LTLSIED 207
Query: 195 GRTNEKSKDVTTLDWN-GEGTLLATGSYDGQARIW-STNGDLKCTL-------SKHKGPI 245
G VTT+ + G+G +A GS D R+W S G L L + HK +
Sbjct: 208 G--------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Query: 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS--ST 303
+S+ + + G +++GS D++ +W+++ K + + T +V + + F S +T
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 319
Query: 304 DNMIYVCKIGENR-----------PIKTFAGHQGEV------NCVKWDPTGSLLASCSDD 346
N Y+ ++R P+ GH+ V N P ++ A+ S D
Sbjct: 320 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379
Query: 347 VTAKIWNMKQ 356
A+IW K+
Sbjct: 380 CKARIWKYKK 389
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 404 DVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 453
DVEL K L H V + FS GEYLA+G +K+ ++ + +G +V
Sbjct: 54 DVELHKSL----DHTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLV 98
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
TL H I+++ W LL+ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 297 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 345
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 346 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
D T +W+++ + H+ ++ ++ +P + S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 462
G + GH + ++ F P G A+GS D + ++ L+ + + TY+ + GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 463 FEVCWNKEGDKIAA 476
V ++K G + A
Sbjct: 274 TSVSFSKSGRLLLA 287
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 39/319 (12%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 252
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 311
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 312 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHS 367
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--NII 270
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
I ++ +S +G +L+LA D +WD L GH V L +
Sbjct: 271 CGITSVSFSKSG--------RLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 428 PTGEYLASGSLDKSMHIWS 446
G +A+GS D + IW+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 291 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78
Query: 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 388
IW+ VH + S + T ++P+G+ G +++
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 389 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
L + ++S D+T LWD+E G+ + GH V SL+ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 433 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489
SG+ D S +W ++EG +T+TG+ I +C+ G+ A + T + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
TL H I+++ W LL+ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 297 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 345
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 346 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
D T +W+++ + H+ ++ ++ +P + S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 462
G + GH + ++ F P G A+GS D + ++ L+ + + TY+ + GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 463 FEVCWNKEGDKIAA 476
V ++K G + A
Sbjct: 274 TSVSFSKSGRLLLA 287
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 39/319 (12%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 252
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 311
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 312 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHS 367
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--NII 270
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
I ++ +S +G +L+LA D +WD L GH V L +
Sbjct: 271 CGITSVSFSKSG--------RLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 428 PTGEYLASGSLDKSMHIWS 446
G +A+GS D + IW+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 291 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGK 78
Query: 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 388
IW+ VH + S + T ++P+G+ G +++
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 389 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
L + ++S D+T LWD+E G+ + GH V SL+ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 433 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489
SG+ D S +W ++EG +T+TG+ I +C+ G+ A + T + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
TL H I+++ W L++ S D I+WD T + H+ P L W
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 114
Query: 297 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 345
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 173
Query: 346 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
D T +W+++ + H+ ++ ++ +P + S + D++ KLWDV
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 224
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 462
G + GH + ++ F P G A+GS D + ++ L+ + + TY+ + GI
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 284
Query: 463 FEVCWNKEGDKIAA 476
V ++K G + A
Sbjct: 285 TSVSFSKSGRLLLA 298
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 131/318 (41%), Gaps = 39/318 (12%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GH +++ A W D IW D + PL
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPL------------ 106
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 252
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 107 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 163
Query: 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 311
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 312 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHS 367
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--NII 281
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
I ++ +S +G +L+LA D +WD L GH V L +
Sbjct: 282 CGITSVSFSKSG--------RLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVT 332
Query: 428 PTGEYLASGSLDKSMHIW 445
G +A+GS D + IW
Sbjct: 333 DDGMAVATGSWDSFLKIW 350
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 291 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 31 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 89
Query: 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 388
IW+ VH + S + T ++P+G+ G +++
Sbjct: 90 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 149
Query: 389 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
L + ++S D+T LWD+E G+ + GH V SL+ +P
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 209
Query: 433 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489
SG+ D S +W ++EG +T+TG+ I +C+ G+ A + T + D R
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
TL H I+++ W L++ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 297 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 345
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 346 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
D T +W+++ + H+ ++ ++ +P + S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 462
G + GH + ++ F P G A+GS D + ++ L+ + + TY+ + GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 463 FEVCWNKEGDKIAA 476
V ++K G + A
Sbjct: 274 TSVSFSKSGRLLLA 287
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 39/319 (12%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 252
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 311
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 312 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHS 367
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--NII 270
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
I ++ +S +G +L+LA D +WD L GH V L +
Sbjct: 271 CGITSVSFSKSG--------RLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 428 PTGEYLASGSLDKSMHIWS 446
G +A+GS D + IW+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 291 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 78
Query: 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 388
IW+ VH + S + T ++P+G+ G +++
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 389 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
L + ++S D+T LWD+E G+ + GH V SL+ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 433 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489
SG+ D S +W ++EG +T+TG+ I +C+ G+ A + T + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 30/254 (11%)
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
TL H I+++ W L++ S D I+WD T + H+ P L W
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----KVHAIP-LRSSWVMTC 103
Query: 297 SFATS----STDNMIYVCKI-------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 345
++A S + + +C I G R + AGH G ++C ++ ++ S S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SG 162
Query: 346 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
D T +W+++ + H+ ++ ++ +P + S + D++ KLWDV
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAP---------DTRLFVSGACDASAKLWDV 213
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG---GI 462
G + GH + ++ F P G A+GS D + ++ L+ + + TY+ + GI
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 463 FEVCWNKEGDKIAA 476
V ++K G + A
Sbjct: 274 TSVSFSKSGRLLLA 287
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 39/319 (12%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GH +++ A W D IW D + PL
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIW---DSYTTNKVHAIPL------------ 95
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIW---STNGDLKCT--LSKHKGPIFSLKWNK 252
+S V T + G +A G D I+ + G+++ + L+ H G + ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-L 152
Query: 253 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCK 311
+ ++T S D T +WD++T + F H+G + + + F + + D +
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 312 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHS 367
+ E +TF GH+ ++N + + P G+ A+ SDD T ++++++ D+ Y HD
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--NII 270
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
I ++ +S +G +L+LA D +WD L GH V L +
Sbjct: 271 CGITSVSFSKSG--------RLLLAGYD-DFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321
Query: 428 PTGEYLASGSLDKSMHIWS 446
G +A+GS D + IW+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 100/238 (42%), Gaps = 40/238 (16%)
Query: 291 DWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348
D R + AT S T+N+ V +I + R +T GH ++ + W LL S S D
Sbjct: 20 DARKACADATLSQITNNIDPVGRI-QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGK 78
Query: 349 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS--------------------GTNNPNQQ 388
IW+ VH + S + T ++P+G+ G +++
Sbjct: 79 LIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRE 138
Query: 389 LI----------------LASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
L + ++S D+T LWD+E G+ + GH V SL+ +P
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 433 LASGSLDKSMHIWSLKEGKIVKTYTGN-GGIFEVCWNKEGDKIAACFANHTVCVLDFR 489
SG+ D S +W ++EG +T+TG+ I +C+ G+ A + T + D R
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 39/236 (16%)
Query: 237 TLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDV--- 290
L+ HKG S ++ + L+TGS D+T ++WDV T + F EF SG T DV
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 291 --DWRNNVSFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 347
+ N F + S D + + + +R ++T+ GH+G++N VK+ P G + SDD
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Query: 348 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL----- 402
T ++++M+ H L+ +++E N N+ I+ S +F + +L
Sbjct: 272 TCRLFDMRTG---HQLQVYNRE-----------PDRNDNELPIVTSVAFSISGRLLFAGY 317
Query: 403 -------WDVELGKLLYSL----NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
WD L +++ +L N H + L S G L +GS DK++ IW+
Sbjct: 318 SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 25/241 (10%)
Query: 233 DLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 290
DL C TL H G ++SL W + +++++ S D IVW+ T + + H ++
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC 114
Query: 291 DWR-NNVSFATSSTDNMIYVCKIGE------NRPI-KTFAGHQGEVNCVKWDP-TGSLLA 341
+ N S A D+ + + N P+ + GH+G + ++ P + L
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 342 SCSDDVTAKIWNMKQDKYVHDLRE-----HSKEIYTIRWSPTGSGTNNPNQQLILASASF 396
+ S D T +W++ + + H+ ++ ++ N+ N + + S S
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL-------SINSLNANMFI-SGSC 226
Query: 397 DSTVKLWDVEL-GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 455
D+TV+LWD+ + + + + +GH + S+ F P G+ +GS D + ++ ++ G ++
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 456 Y 456
Y
Sbjct: 287 Y 287
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 12/213 (5%)
Query: 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-------HSGPTLDVDWRNNVSF 298
FS K N+ L++GS DKT ++W + EE F H+ D+ F
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90
Query: 299 ATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A SS+ D + + + K F GHQ EV V + P + S + K+WN+ +
Sbjct: 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Query: 358 -KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQ-QLILASASFDSTVKLWDVELGKLLYSL 414
K+ +E HS + +R+SP N AS +D +K+W+ ++ Y+
Sbjct: 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTF 209
Query: 415 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
H V L+ SP G+Y+A+G DK + IW +
Sbjct: 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 23/224 (10%)
Query: 140 GHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 199
GH SEV + A+SP + ++W I A+ + V +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 200 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 259
+ V A+ +DG+ ++W+TN ++ T H+ + L + G Y+ T
Sbjct: 176 SANKVQPF-----APYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIAT 230
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLD-VDWRNNVSFATSSTDNMIY---------- 308
G DK ++WD+ + Q+ EF +G T++ + + + + TD +
Sbjct: 231 GGKDKKLLIWDILNLTYPQR-EFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA 289
Query: 309 -VCKIGENRPIKTFAGHQG---EVNCVKWDPTG-SLLASCSDDV 347
VC I E PI G +G + + W+ G L A +D V
Sbjct: 290 PVCTI-EAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 390 ILASASFDSTVKLWDVE-------LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 442
+L S S D TV +W + G +L GH V LA S + S S DK++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 443 HIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTV 483
+W L+ G K + G+ ++ V ++ + +I + A +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREI 142
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/192 (19%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 262
V+ L + E + S+D R+W G H+ ++S+ ++ +L+
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 263 DKTAIVWDVKTEEWKQQFEFHSGPTLD-VDWRNNVSFA-TSSTDNMI-----YVCKIGEN 315
++ +W++ E +F S + DW + V ++ + N + Y +G +
Sbjct: 139 EREIKLWNILGE-----CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193
Query: 316 RPIK----------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365
+K TF H+ VN + P G +A+ D IW++ Y +
Sbjct: 194 GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD 253
Query: 366 HSKEIYTIRWSP 377
I I ++P
Sbjct: 254 AGSTINQIAFNP 265
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 234 LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-----KQQFEFHSGPT 287
L+ TL H G + + + D +L+ S DKT I+W + +E ++ HS
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 288 LDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
DV ++ FA S S D + + + + F GH +V V + + S S D
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 347 VTAKIWN-MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
T K+WN + KY HS+ + +R+SP S NP I+ S +D VK+W++
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---NP----IIVSCGWDKLVKVWNL 202
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 465
KL + GH + ++ SP G ASG D +W L EGK + T G I +
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 466 CWN 468
C++
Sbjct: 263 CFS 265
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 56/337 (16%)
Query: 138 LEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 196
L+GH V A +P D T +W + +N G + ++G
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------RALRGH 85
Query: 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGD 255
++ S V + D G +GS+DG R+W T G H + S+ ++
Sbjct: 86 SHFVSDVVISSD----GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 256 YLLTGSCDKTAIVWD-VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 314
+++GS DKT +W+ + ++ Q E HS +W + V F+ +S++ +I C G
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHS------EWVSCVRFSPNSSNPIIVSC--GW 193
Query: 315 NRPIKTF-----------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
++ +K + GH G +N V P GSL AS D A +W++ + K+++ L
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253
Query: 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLY--------SLN 415
+ I + +SP N+ + A+ ++K+WD+E GK++ S +
Sbjct: 254 -DGGDIINALCFSP--------NRYWLCAATG--PSIKIWDLE-GKIIVDELKQEVISTS 301
Query: 416 GHREP--VYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450
EP SLA+S G+ L +G D + +W + G
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 303 TDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV 360
T+N+ + + E ++ T GH G V + P ++ S S D T +W + +D+
Sbjct: 15 TENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN 74
Query: 361 HD-----LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 415
+ LR HS + + S G Q L S S+D T++LWD+ G
Sbjct: 75 YGIPQRALRGHSHFVSDVVISSDG--------QFAL-SGSWDGTLRLWDLTTGTTTRRFV 125
Query: 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
GH + V S+AFS + SGS DK++ +W
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 15/243 (6%)
Query: 234 LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEW-----KQQFEFHSGPT 287
L+ TL H G + + + D +L+ S DKT I+W + +E ++ HS
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 288 LDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
DV ++ FA S S D + + + + F GH +V V + + S S D
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 347 VTAKIWN-MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
T K+WN + KY HS+ + +R+SP S NP I+ S +D VK+W++
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---NP----IIVSCGWDKLVKVWNL 179
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 465
KL + GH + ++ SP G ASG D +W L EGK + T G I +
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 466 CWN 468
C++
Sbjct: 240 CFS 242
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 54/336 (16%)
Query: 138 LEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 196
L+GH V A +P D T +W + +N G + ++G
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--------RALRGH 62
Query: 197 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGD 255
++ S V + D G +GS+DG R+W T G H + S+ ++
Sbjct: 63 SHFVSDVVISSD----GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 256 YLLTGSCDKTAIVWD-VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 314
+++GS DKT +W+ + ++ Q E HS +W + V F+ +S++ +I C G
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHS------EWVSCVRFSPNSSNPIIVSC--GW 170
Query: 315 NRPIKTF-----------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
++ +K + GH G +N V P GSL AS D A +W++ + K+++ L
Sbjct: 171 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 230
Query: 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE-------LGKLLYSLNG 416
+ I + +SP N+ + A+ ++K+WD+E L + + S +
Sbjct: 231 -DGGDIINALCFSP--------NRYWLCAATG--PSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 417 HREP--VYSLAFSPTGEYLASGSLDKSMHIWSLKEG 450
EP SLA+S G+ L +G D + +W + G
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 241 HKGPIFSLKW--NKK--GDYLLTGSCDKTAIVWDVKTEEWKQQ--FEFHSGPTLDVDWRN 294
H I+S+ W NKK + ++TGS D VW + E Q E H + VD +
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 295 NVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 353
+ A SS+ D I + + + IK+ + + + P LA+ + I+
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 354 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYS 413
++ K + L K I +I +SP G LAS + D + ++D+ GKLL++
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGK---------YLASGAIDGIINIFDIATGKLLHT 201
Query: 414 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 460
L GH P+ SL FSP + L + S D + I+ ++ + T +G+
Sbjct: 202 LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 19/245 (7%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
LEGH V + S D+ R+W + +G GP+
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV------------ 123
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDY 256
D TL ++ + LATG++ G+ I+ +G + +L I S+ ++ G Y
Sbjct: 124 -----DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178
Query: 257 LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGEN 315
L +G+ D ++D+ T + E H+ P + + ++ T+S D I + +
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Query: 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375
T +GH V V + P + S S D + K+W++ VH +H +++ +++
Sbjct: 239 NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Query: 376 SPTGS 380
+ GS
Sbjct: 299 NGNGS 303
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 23/246 (9%)
Query: 238 LSKHKGPIFSLKWNKKGDY---LLTGSCDKTAIVW----DVKTEEWK-----QQFEFHSG 285
L+ H+G + SL + + +++ S DKT + W D + E ++ E HS
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 286 PTLDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 344
DV NN +FA S++ D+ + + + + F GH +V V + P + S
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 345 DDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402
D ++WN+K + +H L H+ + +R+SP+ + P ++ S +D+ VK+
Sbjct: 129 RDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPS---LDAP----VIVSGGWDNLVKV 180
Query: 403 WDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGI 462
WD+ G+L+ L GH V S+ SP G AS D +W L +G+ + I
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 463 FEVCWN 468
++C++
Sbjct: 241 NQICFS 246
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 112/273 (41%), Gaps = 37/273 (13%)
Query: 196 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKG 254
R S V+ + + G + S+D R+W+ NG + H + S+ ++
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 255 DYLLTGSCDKTAIVWDVKTE-----------EWKQQFEFHSGPTLDVDWRNNVSFATSST 303
+++G D VW+VK E +W F P+LD +
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF--SPSLDAP-----VIVSGGW 174
Query: 304 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
DN++ V + R + GH V V P GSL AS D A++W++ + + + ++
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEM 234
Query: 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL----NGHRE 419
+ P +PN+ + A+ + ++++D+E ++ L G ++
Sbjct: 235 AAGA---------PINQICFSPNRYWMCAAT--EKGIRIFDLENKDIIVELAPEHQGSKK 283
Query: 420 PV---YSLAFSPTGEYLASGSLDKSMHIWSLKE 449
V S+A+S G L SG D + +W + E
Sbjct: 284 IVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 61/298 (20%), Positives = 105/298 (35%), Gaps = 77/298 (25%)
Query: 113 GPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIA 172
GP P S+ S+ +P+ LEGH++ V A S D + R+W +
Sbjct: 44 GPNP---DRHSSECSYGLPDRR---LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL- 96
Query: 173 DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 232
QNG L H +KDV ++ ++ + + +G D R+W+ G
Sbjct: 97 --------QNGQCQYKFLGH--------TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Query: 233 DLKCTLSK--HKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 288
+ TLS+ H + ++++ D +++G D VWD+ T + H+
Sbjct: 141 ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVT 200
Query: 289 DVDWRNNVSFATSS-------------------------------TDNMIYVCKIGENRP 317
V + S SS + N ++C E +
Sbjct: 201 SVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATE-KG 259
Query: 318 IKTF------------AGHQG------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
I+ F HQG E + W GS L S D ++W + ++
Sbjct: 260 IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSEN 317
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 105/224 (46%), Gaps = 16/224 (7%)
Query: 254 GDYLLTGSCDKTAIVWDVKTEE-----WKQQFEFHSGPTLDVDWRNNVSFATSST-DNMI 307
D +++ S DK+ I+W + ++ +++ HS DV ++ FA S + D +
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 308 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN-MKQDKYV--HDLR 364
+ + + F GH +V V + + S S D T K+WN + + KY
Sbjct: 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGE 514
Query: 365 EHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSL 424
H + +R+SP Q + SAS+D TVK+W++ KL +L GH V ++
Sbjct: 515 GHRDWVSCVRFSPN-------TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 425 AFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 468
A SP G ASG D + +W L EGK + + N I +C++
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS 611
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/335 (21%), Positives = 127/335 (37%), Gaps = 94/335 (28%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 197
L GH+ V S D R+W +A G S + G T
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST-------------RRFVGHT 472
Query: 198 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK----HKGPIFSLKW--N 251
KDV ++ ++ + + + S D ++W+T G+ K T+S+ H+ + +++ N
Sbjct: 473 ----KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 311
+++ S DKT VW++ CK
Sbjct: 529 TLQPTIVSASWDKTVKVWNLSN------------------------------------CK 552
Query: 312 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 371
+ T AGH G V+ V P GSL AS D +W++ + K ++ L +S I+
Sbjct: 553 LRS-----TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIH 606
Query: 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN---------------- 415
+ +S PN+ + A+ + +K+WD+E ++ L
Sbjct: 607 ALCFS--------PNRYWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPA 656
Query: 416 -GHREPVY--SLAFSPTGEYLASGSLDKSMHIWSL 447
R+ +Y SL +S G L SG D + +W +
Sbjct: 657 ATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 234 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 287
L+ TL H G + SL + + + LL+ S DKT I W + ++ K + F+ HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 288 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
D + ++A S++ D + + + + F GH+ +V V D S++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T K+W +K + + L H+ + +R P ++ + + SA D VK W++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 466
++ GH + +L SP G +AS D + +W+L K + T + +F +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 467 WNKEGDKIAACFA 479
++ +AA A
Sbjct: 245 FSPNRYWLAAATA 257
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 211 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 270 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 320
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 321 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP--- 247
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHR---EP-VYSLAFSPTGEY 432
N+ + A+ + + +K++ ++ L+ L G+ EP SLA+S G+
Sbjct: 248 -----NRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300
Query: 433 LASGSLDKSMHIWSL 447
L +G D + +W +
Sbjct: 301 LFAGYTDNVIRVWQV 315
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 234 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 287
L+ TL H G + SL + + + LL+ S DKT I W + ++ K + F+ HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 288 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
D + ++A S++ D + + + + F GH+ +V V D S++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T K+W +K + + L H+ + +R P ++ + + SA D VK W++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 466
++ GH + +L SP G +AS D + +W+L K + T + +F +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 467 WNKEGDKIAACFA 479
++ +AA A
Sbjct: 245 FSPNRYWLAAATA 257
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 211 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 270 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 320
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 321 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP--- 247
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHR---EP-VYSLAFSPTGEY 432
N+ + A+ + + +K++ ++ L+ L G+ EP SLA+S G+
Sbjct: 248 -----NRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300
Query: 433 LASGSLDKSMHIWSL 447
L +G D + +W +
Sbjct: 301 LFAGYTDNVIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 234 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 287
L+ TL H G + SL + + + LL+ S DKT I W + ++ K + F+ HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 288 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
D + ++A S++ D + + + + F GH+ +V V D S++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T K+W +K + + L H+ + +R P ++ + + SA D VK W++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 466
++ GH + +L SP G +AS D + +W+L K + T + +F +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 467 WNKEGDKIAACFA 479
++ +AA A
Sbjct: 245 FSPNRYWLAAATA 257
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 32/255 (12%)
Query: 211 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 270 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 320
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 321 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--- 247
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-------NGHREP-VYSLAFSPTGEY 432
N+ + A+ + + +K++ ++ L+ L + EP SLA+S G+
Sbjct: 248 -----NRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQT 300
Query: 433 LASGSLDKSMHIWSL 447
L +G D + +W +
Sbjct: 301 LFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 234 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 287
L+ TL H G + SL + + + LL+ S DKT I W + ++ K + F+ HS
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 288 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
D + ++A S++ D + + + + F GH+ +V V D S++ S S D
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T K+W +K + + L H+ + +R P ++ + + SA D VK W++
Sbjct: 123 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 178
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 466
++ GH + +L SP G +AS D + +W+L K + T + +F +
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238
Query: 467 WNKEGDKIAACFA 479
++ +AA A
Sbjct: 239 FSPNRYWLAAATA 251
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 32/255 (12%)
Query: 211 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 270 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 320
+K + +W Q D D +V+ ++ D M+ + + +
Sbjct: 129 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 321 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380
F GH +N + P G+L+AS D +WN+ K ++ L E++++ +SP
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP--- 241
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHR---EP-VYSLAFSPTGEY 432
N+ + A+ + + +K++ ++ L+ L G+ EP SLA+S G+
Sbjct: 242 -----NRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 294
Query: 433 LASGSLDKSMHIWSL 447
L +G D + +W +
Sbjct: 295 LFAGYTDNVIRVWQV 309
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 11/253 (4%)
Query: 234 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 287
L+ TL H G + SL + + + LL+ S DKT I W + ++ K + F+ HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 288 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
D + ++A S++ D + + + + F GH+ +V V D S++ S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T K+W +K + + L H+ + +R P ++ + + SA D VK W++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKMVKAWNLN 184
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 466
++ GH + +L SP G +AS D + +W+L K + T + +F +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Query: 467 WNKEGDKIAACFA 479
++ +AA A
Sbjct: 245 FSPNRYWLAAATA 257
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/354 (19%), Positives = 131/354 (37%), Gaps = 74/354 (20%)
Query: 100 SKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXXXXXXX 159
S + N +L + + T + F +P V +GH+ V C +
Sbjct: 26 SAGQPNLLLSASRDKTLISWKLTGDDQKFGVP---VRSFKGHSHIVQDCTLTADGAYALS 82
Query: 160 XXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 219
D T R+W +A G R DV ++D + + +++ +G
Sbjct: 83 ASWDKTLRLWDVATG-----------------ETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 220 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 279
S D ++W+ G TL H +W Q
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGH--------------------------------NDWVSQ 153
Query: 280 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 339
D D +V+ ++ D M+ + + + F GH +N + P G+L
Sbjct: 154 VRVVPNEKADDD---SVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 340 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDST 399
+AS D +WN+ K ++ L E++++ +S PN+ + A+ + +
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFS--------PNRYWLAAATA--TG 259
Query: 400 VKLWDVELGKLLYSLN----GHR---EP-VYSLAFSPTGEYLASGSLDKSMHIW 445
+K++ ++ L+ L G+ EP SLA+S G+ L +G D + +W
Sbjct: 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+ D + V K + H+ EV C + S +A+CS D KIW+
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K VH EHS+++ ++ N + L+LA+ S D +KLWD+ + ++ GH
Sbjct: 697 KLVHTYDEHSEQVNCCHFT-------NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-------------IFE 464
V FSP E LAS S D ++ +W ++ K+ I +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 809
Query: 465 VC-WNKEGDKIAACFANHTV 483
C W+ +GDKI N +
Sbjct: 810 CCSWSADGDKIIVAAKNKVL 829
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 139/399 (34%), Gaps = 88/399 (22%)
Query: 140 GHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGG---------AQNGPLNVLVL 190
GHT+ V C +SP D T R+W + +++ P +V V+
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 191 KHVKGRTNEKSK-------DVTTLDWNGEGTL--LATGS-----------YDGQARI--- 227
+ + K V D + G L + TG YD A I
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 228 ------WSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------- 273
W+ + LK + H + + ++ G LT S D+T VW+ K
Sbjct: 868 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 927
Query: 274 ---EEWKQQFEFHSGPTLDVDWRNNVSFATSST--------------------------- 303
+E F+ + L VD + T
Sbjct: 928 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 987
Query: 304 -DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 362
D I + ++ NR + GH+ V +++ G L S S+D ++WN + YV
Sbjct: 988 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF- 1046
Query: 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 422
L+ H + + R Q L S SFD TVK+W+V G++ H+ V
Sbjct: 1047 LQAHQETVKDFRLL----------QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1096
Query: 423 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 461
S A S +S S DK+ IWS + G+ G
Sbjct: 1097 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1135
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 132/353 (37%), Gaps = 44/353 (12%)
Query: 139 EGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGA----------QNGPLNVL 188
GH S V +SP D T R+W N Q VL
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 189 VLKHVKGRTNEKSKDVTTLDWNGEGTL-----------LATGSYDGQARIWST-NGDLKC 236
+ +++G K +D+ E + +A G DG +I N +
Sbjct: 946 AVDNIRGLQLIAGK-TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 1004
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
+ HK + +++ G L++ S D VW+ +T ++ + H D +
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1063
Query: 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356
+ S D + V + R + F HQG V + +S S D TAKIW+
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1123
Query: 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-- 414
+H+L+ H+ + +S G ++LA+ + +++W+V G+LL+S
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDG---------ILLATGDDNGEIRIWNVSDGQLLHSCAP 1174
Query: 415 -------NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 460
H V + FSP + L S + W++ G +T+ NG
Sbjct: 1175 ISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1225
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 30/258 (11%)
Query: 209 WNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 267
++ +G +A+ D +++ + G+ + H+ + ++ Y+ T S DK
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 268 VWDVKTEEWKQQFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 324
+WD T + ++ HS + N++ AT S D + + + + T GH
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 325 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---------DKYVHDLREHSKEIYTI-- 373
VN ++ P LLASCS D T ++W+++ ++ + +++ I
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 809
Query: 374 --RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTG 430
WS G ++I+A+ + V L+D+ LL ++ GH + FSP
Sbjct: 810 CCSWSADGD-------KIIVAAK---NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY- 858
Query: 431 EYLASGSLDK-SMHIWSL 447
++LA +L + + +W++
Sbjct: 859 DHLAVIALSQYCVELWNI 876
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 422
+R H+ +Y +S G +AS D T++++ E G+ L + H + V
Sbjct: 618 VRPHTDAVYHACFSQDGQR---------IASCGADKTLQVFKAETGEKLLDIKAHEDEVL 668
Query: 423 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456
AFS Y+A+ S DK + IW GK+V TY
Sbjct: 669 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 88/448 (19%), Positives = 155/448 (34%), Gaps = 108/448 (24%)
Query: 97 KVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSD----VTILEGHTSEVCACAWSP 152
++ +P + V + IA+ A ++ ++ ++ + ++ H EV CA+S
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 153 XXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212
D +IW A G L H +E S+ V + +
Sbjct: 675 DDSYIATCSADKKVKIWDSATGK--------------LVHT---YDEHSEQVNCCHFTNK 717
Query: 213 GT--LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
LLATGS D ++W N + + T+ H + +++ + L + S D T +W
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 270 DV------KTEEWKQQFEFHSGPTLDVD-------W-----------RNNVSFATSSTDN 305
DV K+ K+ F P DV+ W +N V T
Sbjct: 778 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 837
Query: 306 MIYVCKIGENRPIKT--FA------------------------------GHQGEVNCVKW 333
++ G + I+ F+ GH V+ V +
Sbjct: 838 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 897
Query: 334 DPTGSLLASCSDDVTAKIWNMKQ-------------DKYVHDLREHSKEIYTIR-----W 375
P GS + SDD T ++W K+ D + + IR
Sbjct: 898 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 376 SPTGSGTNNPNQQL----------ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 425
TG P Q+ +A D +K+ ++ ++ S GH++ V +
Sbjct: 958 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1017
Query: 426 FSPTGEYLASGSLDKSMHIWSLKEGKIV 453
F+ G+ L S S D + +W+ + G V
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQTGDYV 1045
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 21/200 (10%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+ D + V K + H+ EV C + S +A+CS D KIW+
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
K VH EHS+++ ++ N + L+LA+ S D +KLWD+ + ++ GH
Sbjct: 690 KLVHTYDEHSEQVNCCHFT-------NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG-------------IFE 464
V FSP E LAS S D ++ +W ++ K+ I +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802
Query: 465 VC-WNKEGDKIAACFANHTV 483
C W+ +GDKI N +
Sbjct: 803 CCSWSADGDKIIVAAKNKVL 822
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/399 (22%), Positives = 139/399 (34%), Gaps = 88/399 (22%)
Query: 140 GHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGG---------AQNGPLNVLVL 190
GHT+ V C +SP D T R+W + +++ P +V V+
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 191 KHVKGRTNEKSK-------DVTTLDWNGEGTL--LATGS-----------YDGQARI--- 227
+ + K V D + G L + TG YD A I
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 228 ------WSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT------- 273
W+ + LK + H + + ++ G LT S D+T VW+ K
Sbjct: 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920
Query: 274 ---EEWKQQFEFHSGPTLDVDWRNNVSFATSST--------------------------- 303
+E F+ + L VD + T
Sbjct: 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD 980
Query: 304 -DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 362
D I + ++ NR + GH+ V +++ G L S S+D ++WN + YV
Sbjct: 981 EDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF- 1039
Query: 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 422
L+ H + + R Q L S SFD TVK+W+V G++ H+ V
Sbjct: 1040 LQAHQETVKDFRLL----------QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVL 1089
Query: 423 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGG 461
S A S +S S DK+ IWS + G+ G
Sbjct: 1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG 1128
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 132/353 (37%), Gaps = 44/353 (12%)
Query: 139 EGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGA----------QNGPLNVL 188
GH S V +SP D T R+W N Q VL
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 189 VLKHVKGRTNEKSKDVTTLDWNGEGTL-----------LATGSYDGQARIWST-NGDLKC 236
+ +++G K +D+ E + +A G DG +I N +
Sbjct: 939 AVDNIRGLQLIAGK-TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 237 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
+ HK + +++ G L++ S D VW+ +T ++ + H D +
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1056
Query: 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356
+ S D + V + R + F HQG V + +S S D TAKIW+
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDL 1116
Query: 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL-- 414
+H+L+ H+ + +S G ++LA+ + +++W+V G+LL+S
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDG---------ILLATGDDNGEIRIWNVSDGQLLHSCAP 1167
Query: 415 -------NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNG 460
H V + FSP + L S + W++ G +T+ NG
Sbjct: 1168 ISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1218
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 113/258 (43%), Gaps = 30/258 (11%)
Query: 209 WNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 267
++ +G +A+ D +++ + G+ + H+ + ++ Y+ T S DK
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 268 VWDVKTEEWKQQFEFHSGPTLDVDW---RNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 324
+WD T + ++ HS + N++ AT S D + + + + T GH
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 325 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ---------DKYVHDLREHSKEIYTI-- 373
VN ++ P LLASCS D T ++W+++ ++ + +++ I
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802
Query: 374 --RWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN-GHREPVYSLAFSPTG 430
WS G ++I+A+ + V L+D+ LL ++ GH + FSP
Sbjct: 803 CCSWSADGD-------KIIVAAK---NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY- 851
Query: 431 EYLASGSLDK-SMHIWSL 447
++LA +L + + +W++
Sbjct: 852 DHLAVIALSQYCVELWNI 869
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 422
+R H+ +Y +S G +AS D T++++ E G+ L + H + V
Sbjct: 611 VRPHTDAVYHACFSQDGQR---------IASCGADKTLQVFKAETGEKLLDIKAHEDEVL 661
Query: 423 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456
AFS Y+A+ S DK + IW GK+V TY
Sbjct: 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 88/448 (19%), Positives = 155/448 (34%), Gaps = 108/448 (24%)
Query: 97 KVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSD----VTILEGHTSEVCACAWSP 152
++ +P + V + IA+ A ++ ++ ++ + ++ H EV CA+S
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 153 XXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212
D +IW A G L H +E S+ V + +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGK--------------LVHT---YDEHSEQVNCCHFTNK 710
Query: 213 GT--LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
LLATGS D ++W N + + T+ H + +++ + L + S D T +W
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 270 DV------KTEEWKQQFEFHSGPTLDVD-------W-----------RNNVSFATSSTDN 305
DV K+ K+ F P DV+ W +N V T
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSG 830
Query: 306 MIYVCKIGENRPIKT--FA------------------------------GHQGEVNCVKW 333
++ G + I+ F+ GH V+ V +
Sbjct: 831 LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890
Query: 334 DPTGSLLASCSDDVTAKIWNMKQ-------------DKYVHDLREHSKEIYTIR-----W 375
P GS + SDD T ++W K+ D + + IR
Sbjct: 891 SPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 376 SPTGSGTNNPNQQL----------ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLA 425
TG P Q+ +A D +K+ ++ ++ S GH++ V +
Sbjct: 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010
Query: 426 FSPTGEYLASGSLDKSMHIWSLKEGKIV 453
F+ G+ L S S D + +W+ + G V
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQTGDYV 1038
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 114/253 (45%), Gaps = 11/253 (4%)
Query: 234 LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK-----QQFEFHSGPT 287
L+ TL H G + SL + + + LL+ S DKT I W + ++ K + F+ HS
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 288 LDVDWRNNVSFATSST-DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 346
D + ++A S++ D + + + + F GH+ +V V D S + S S D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T K+W +K + + L H+ + +R P ++ + + SA D VK W++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKXVKAWNLN 184
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVC 466
++ GH + +L SP G +AS D + +W+L K T + +F +
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLA 244
Query: 467 WNKEGDKIAACFA 479
++ +AA A
Sbjct: 245 FSPNRYWLAAATA 257
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 111/255 (43%), Gaps = 32/255 (12%)
Query: 211 GEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
+G + S+D R+W G+ HK + S+ +KK +++GS DKT VW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 270 DVKTE---------EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 320
+K + +W Q D D +V+ ++ D + + + +
Sbjct: 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDD---SVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 321 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380
F GH +N + P G+L+AS D +WN+ K + L E++++ +SP
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSP--- 247
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN----GHR---EP-VYSLAFSPTGEY 432
N+ + A+ + + +K++ ++ L+ L G+ EP SLA+S G+
Sbjct: 248 -----NRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300
Query: 433 LASGSLDKSMHIWSL 447
L +G D + +W +
Sbjct: 301 LFAGYTDNVIRVWQV 315
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 22/253 (8%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 261
++++ W EG LA G+ + ++W + ++ H + SL WN Y+L+ GS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 217
Query: 262 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGEN-- 315
DV+ E HS + W + A+ DN++ V GE
Sbjct: 218 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 277
Query: 316 RPIKTFAGHQGEVNCVKWDP-TGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 372
P++TF HQG V V W P ++LA+ + D +IWN+ + + HS ++ +
Sbjct: 278 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 336
Query: 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
I WSP ++LI + + +W + L GH V SL SP G
Sbjct: 337 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 389
Query: 433 LASGSLDKSMHIW 445
+AS + D+++ +W
Sbjct: 390 VASAAADETLRLW 402
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 126/292 (43%), Gaps = 23/292 (7%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP---IFSLKWNKKGDYLLTG 260
+ +DW+ G +LA + D +WS + L + + P I S+ W K+G+YL G
Sbjct: 119 LNLVDWS-SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 176
Query: 261 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV--CKIGENRPI 318
+ +WDV+ ++ + HS + W N+ ++ S I+ ++ E+ +
Sbjct: 177 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-V 234
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHSKEIYTIR 374
T +GH EV ++W P G LAS +D +W + + +H + +
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA 434
W P S L + D +++W+V G L +++ H + V S+ +SP + L
Sbjct: 295 WCPWQSNV------LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELI 347
Query: 435 SGS--LDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTV 483
SG + IW V G+ + + + +G +A+ A+ T+
Sbjct: 348 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 399
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 20/208 (9%)
Query: 122 TSASESFEIPNSDVTI-------LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 174
+S S S I + DV + L GH+ EVC W+P D+ +W A G
Sbjct: 214 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 273
Query: 175 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 234
+ G + + +G K V W G+ D RIW+
Sbjct: 274 ------EGGWVPLQTFTQHQGAV----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 323
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292
+ + S+ W+ L++G ++W T + + H+ L +
Sbjct: 324 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 383
Query: 293 R-NNVSFATSSTDNMIYVCKIGENRPIK 319
+ + A+++ D + + + E P +
Sbjct: 384 SPDGATVASAAADETLRLWRCFELDPAR 411
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 22/253 (8%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 261
++++ W EG LA G+ + ++W + ++ H + SL WN Y+L+ GS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGS 206
Query: 262 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGEN-- 315
DV+ E HS + W + A+ DN++ V GE
Sbjct: 207 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 266
Query: 316 RPIKTFAGHQGEVNCVKWDP-TGSLLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 372
P++TF HQG V V W P ++LA+ + D +IWN+ + + HS ++ +
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 325
Query: 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
I WSP ++LI + + +W + L GH V SL SP G
Sbjct: 326 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378
Query: 433 LASGSLDKSMHIW 445
+AS + D+++ +W
Sbjct: 379 VASAAADETLRLW 391
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 126/292 (43%), Gaps = 23/292 (7%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP---IFSLKWNKKGDYLLTG 260
+ +DW+ G +LA + D +WS + L + + P I S+ W K+G+YL G
Sbjct: 108 LNLVDWS-SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 165
Query: 261 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV--CKIGENRPI 318
+ +WDV+ ++ + HS + W N+ ++ S I+ ++ E+ +
Sbjct: 166 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-V 223
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHSKEIYTIR 374
T +GH EV ++W P G LAS +D +W + + +H + +
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA 434
W P S L + D +++W+V G L +++ H + V S+ +SP + L
Sbjct: 284 WCPWQSNV------LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELI 336
Query: 435 SGS--LDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTV 483
SG + IW V G+ + + + +G +A+ A+ T+
Sbjct: 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 74/208 (35%), Gaps = 20/208 (9%)
Query: 122 TSASESFEIPNSDVTI-------LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 174
+S S S I + DV + L GH+ EVC W+P D+ +W A G
Sbjct: 203 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262
Query: 175 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 234
+ G + + +G K V W G+ D RIW+
Sbjct: 263 ------EGGWVPLQTFTQHQGAV----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292
+ + S+ W+ L++G ++W T + + H+ L +
Sbjct: 313 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 372
Query: 293 R-NNVSFATSSTDNMIYVCKIGENRPIK 319
+ + A+++ D + + + E P +
Sbjct: 373 SPDGATVASAAADETLRLWRCFELDPAR 400
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 357
A+ D + V K + H+ EV C + +A+CS D KIWN
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 358 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
+ VH EHS+++ ++ N + L+LA+ S D +KLWD+ + ++ GH
Sbjct: 696 ELVHTYDEHSEQVNCCHFT-------NSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGH 748
Query: 418 REPVYSLAFSPTGEYLASGSLDKSMHIW 445
V FSP + LAS S D ++ +W
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 106/237 (44%), Gaps = 13/237 (5%)
Query: 179 GAQNGPLNVLVL---KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK 235
G +NG + +L L + + R K K V + + + L + S D + ++W+ D
Sbjct: 985 GDENGAIEILELVNNRIFQSRFQHK-KTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC 1043
Query: 236 CTLSKHKGPI--FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 293
L H+ + F L N + LL+ S D T VW++ T ++ F H G L D
Sbjct: 1044 IFLRGHQETVKDFRLLKNSR---LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDIS 1100
Query: 294 NNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352
++ + F+++S D + P+ GH G V C + +LLA+ D+ +IW
Sbjct: 1101 HDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Query: 353 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGK 409
N+ + +H S+E +P+ ++++++ + +K W+V G+
Sbjct: 1161 NVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGY---IKWWNVVTGE 1214
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 115/294 (39%), Gaps = 56/294 (19%)
Query: 209 WNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 267
++ +G +A+ D +++ + G+ + H+ + ++ ++ T S DK
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 268 VWDVKTEEWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGH 324
+W+ T E ++ HS + N ++ AT S+D + + + + T GH
Sbjct: 689 IWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGH 748
Query: 325 QGEVNCVKWDPTGSLLASCSDDVTAKIW-----------NMKQDKYVHDLREHSKEIYTI 373
VN ++ P LLASCS D T K+W N+KQ + +L + +++ I
Sbjct: 749 TNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ--FFLNLEDPQEDMEVI 806
Query: 374 ----RWSPTGSGTN----------------------------------NPNQQLILASAS 395
WS G+ +P L + + S
Sbjct: 807 VKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALS 866
Query: 396 FDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449
V+LW+ + + GH V+ + FSP G + S D+++ +W K+
Sbjct: 867 -QYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 121/329 (36%), Gaps = 47/329 (14%)
Query: 97 KVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSD----VTILEGHTSEVCACAWSP 152
++ +P + V + IA+ A ++ ++ ++ + ++ H EV CA+S
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST 673
Query: 153 XXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 212
D +IW G L H +E S+ V +
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGE--------------LVHT---YDEHSEQVNCCHFTNS 716
Query: 213 G--TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
LLATGS D ++W N + + T+ H + +++ L + S D T +W
Sbjct: 717 SHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Query: 270 DV------KTEEWKQQFEFHSGPTLDVD-------WRNNVSFATSSTDNMIYVCKIGENR 316
D K+ KQ F P D++ W + + + N I++ I +
Sbjct: 777 DATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSG 836
Query: 317 PI-KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375
+ + GH + + P L ++WN V D R H ++ + +
Sbjct: 837 LLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMF 896
Query: 376 SPTGSGTNNPNQQLILASASFDSTVKLWD 404
SP GS ++S D T++LW+
Sbjct: 897 SPDGSS---------FLTSSDDQTIRLWE 916
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 337 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASF 396
G +ASC D T +++ + + + +++ H E+ +S +A+ S
Sbjct: 633 GQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR---------FIATCSV 683
Query: 397 DSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYL--ASGSLDKSMHIWSLKEGKIVK 454
D VK+W+ G+L+++ + H E V F+ + +L A+GS D + +W L + +
Sbjct: 684 DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 455 TYTGNGGIFEVCWNKEGDK-IAACFANHTV 483
T G+ C DK +A+C A+ T+
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTL 773
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 42/211 (19%)
Query: 307 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 366
I + ++ NR ++ H+ V +++ L S SDD ++WN + DK + LR H
Sbjct: 991 IEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGH 1049
Query: 367 SKEIYTIR---------WSPTGSG------TNNPNQQLI-----------------LASA 394
+ + R WS G+ T N + + +S
Sbjct: 1050 QETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSST 1109
Query: 395 SFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVK 454
S D T K+W +L L+ L GH V AFS LA+G + + IW++ G+++
Sbjct: 1110 SADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Query: 455 ---------TYTGNGGIFEVCWNKEGDKIAA 476
T G + ++C++ +G + +
Sbjct: 1170 LCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY 422
+R H+ +Y +S G +AS D T++++ E G+ L + H + V
Sbjct: 617 VRPHTDAVYHACFSEDGQR---------IASCGADKTLQVFKAETGEKLLEIKAHEDEVL 667
Query: 423 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456
AFS ++A+ S+DK + IW+ G++V TY
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 112/257 (43%), Gaps = 22/257 (8%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLT-GS 261
++++ W EG LA G+ + ++W + ++ H + SL WN Y+L+ GS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGS 126
Query: 262 CDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYV--CKIGEN-- 315
DV+ E HS + W + A+ DN++ V GE
Sbjct: 127 RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186
Query: 316 RPIKTFAGHQGEVNCVKWDPTGS-LLASC--SDDVTAKIWNMKQDKYVHDLREHSKEIYT 372
P++TF HQG V V W P S +LA+ + D +IWN+ + + HS ++ +
Sbjct: 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCS 245
Query: 373 IRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEY 432
I WSP ++LI + + +W + L GH V SL SP G
Sbjct: 246 ILWSPH-------YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298
Query: 433 LASGSLDKSMHIWSLKE 449
+AS + D+++ +W E
Sbjct: 299 VASAAADETLRLWRCFE 315
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 126/292 (43%), Gaps = 23/292 (7%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP---IFSLKWNKKGDYLLTG 260
+ +DW+ G +LA + D +WS + L + + P I S+ W K+G+YL G
Sbjct: 28 LNLVDWS-SGNVLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG 85
Query: 261 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV--CKIGENRPI 318
+ +WDV+ ++ + HS + W N+ ++ S I+ ++ E+ +
Sbjct: 86 TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHH-V 143
Query: 319 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK----YVHDLREHSKEIYTIR 374
T +GH EV ++W P G LAS +D +W + + +H + +
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 375 WSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLA 434
W P S L + D +++W+V G L +++ H + V S+ +SP + L
Sbjct: 204 WCPWQSNV------LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELI 256
Query: 435 SGS--LDKSMHIWSLKEGKIVKTYTGNGG-IFEVCWNKEGDKIAACFANHTV 483
SG + IW V G+ + + + +G +A+ A+ T+
Sbjct: 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 308
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 20/206 (9%)
Query: 122 TSASESFEIPNSDVTI-------LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADG 174
+S S S I + DV + L GH+ EVC W+P D+ +W A G
Sbjct: 123 SSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182
Query: 175 TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 234
+ G + + +G K V W G+ D RIW+
Sbjct: 183 ------EGGWVPLQTFTQHQGAV----KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 292
+ + S+ W+ L++G ++W T + + H+ L +
Sbjct: 233 CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTM 292
Query: 293 R-NNVSFATSSTDNMIYVCKIGENRP 317
+ + A+++ D + + + E P
Sbjct: 293 SPDGATVASAAADETLRLWRCFELDP 318
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 49/217 (22%)
Query: 238 LSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
L H+ + L WN + YLL+ S D T +WD+
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 212
Query: 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 355
AT +I I F GH V V W SL S +DD IW+ +
Sbjct: 213 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262
Query: 356 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 411
+ K H + H+ E+ + + NP + ILA+ S D TV LWD+ KL L
Sbjct: 263 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 314
Query: 412 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 447
+S H++ ++ + +SP E LAS D+ +H+W L
Sbjct: 315 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 214 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 268
+L + + D + IW T + T+ H + L +N +++L TGS DKT +
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 269 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENR------ 316
WD++ + K FE H V W N A+S TD ++V KIGE +
Sbjct: 305 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 364
Query: 317 ---PIKTF--AGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 359
P F GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 313 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 371
GE +P GHQ E + W+P L S SDD T +W++ H + + +K I+
Sbjct: 169 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 227
Query: 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 428
T + + + + S + D + +WD K ++++ H V L+F+P
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 429 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 476
E+ LA+GS DK++ +W L+ K+ + ++ + IF+V W+ + I A
Sbjct: 288 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 193 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 251
+K + +S V +D++ + T Y G+ +W+ ++ ++ + P+ + K+
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 311
+ ++++ GS D V++ T E FE H + + S +D++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 312 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 367
EN +TF GH+ V CV ++P S AS D T K+W++ Q L
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
+ + + + P P++ ++ +AS D T+K+WD + + +L GH V F
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 428 PTGEYLASGSLDKSMHIWSLKEGKIVKT 455
PT + SGS D ++ IW+ K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 19/241 (7%)
Query: 216 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 275 -EWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNC 330
+Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 331 VKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 388
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-------- 241
Query: 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWS 446
I+ S S D T+K+W+ K+ +LN E + +A PTG Y+ASG D + S
Sbjct: 242 -IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLS 299
Query: 447 L 447
L
Sbjct: 300 L 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 193 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 251
+K + +S V +D++ + T Y G+ +W+ ++ ++ + P+ + K+
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 311
+ ++++ GS D V++ T E FE H + + S +D++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 312 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 367
EN +TF GH+ V CV ++P S AS D T K+W++ Q L
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
+ + + + P P++ ++ +AS D T+K+WD + + +L GH V F
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 428 PTGEYLASGSLDKSMHIWSLKEGKIVKT 455
PT + SGS D ++ IW+ K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 19/241 (7%)
Query: 216 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 275 -EWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNC 330
+Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 331 VKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 388
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-------- 241
Query: 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWS 446
I+ S S D T+K+W+ K+ +LN E + +A PTG Y+ASG D + S
Sbjct: 242 -IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLS 299
Query: 447 L 447
L
Sbjct: 300 L 300
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 90/217 (41%), Gaps = 49/217 (22%)
Query: 238 LSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
L H+ + L WN + YLL+ S D T +WD+
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 214
Query: 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 355
AT +I I F GH V V W SL S +DD IW+ +
Sbjct: 215 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 264
Query: 356 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 411
+ K H + H+ E+ + + NP + ILA+ S D TV LWD+ KL L
Sbjct: 265 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 316
Query: 412 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 447
+S H++ ++ + +SP E LAS D+ +H+W L
Sbjct: 317 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 214 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 268
+L + + D + IW T + T+ H + L +N +++L TGS DKT +
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 269 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENR------ 316
WD++ + K FE H V W N A+S TD ++V KIGE +
Sbjct: 307 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 366
Query: 317 ---PIKTF--AGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 359
P F GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 367 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 415
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 313 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 371
GE +P GHQ E + W+P L S SDD T +W++ H + + +K I+
Sbjct: 171 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 229
Query: 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 428
T + + + + S + D + +WD K ++++ H V L+F+P
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 289
Query: 429 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 476
E+ LA+GS DK++ +W L+ K+ + ++ + IF+V W+ + I A
Sbjct: 290 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 89/217 (41%), Gaps = 49/217 (22%)
Query: 238 LSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 296
L H+ + L WN YLL+ S D T +WD+
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN------------------------ 216
Query: 297 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMK 355
AT +I I F GH V V W SL S +DD IW+ +
Sbjct: 217 --ATPKEHRVIDAKNI--------FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 266
Query: 356 QD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 411
+ K H + H+ E+ + + NP + ILA+ S D TV LWD+ KL L
Sbjct: 267 NNNTSKPSHTVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDLRNLKLKL 318
Query: 412 YSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 447
+S H++ ++ + +SP E LAS D+ +H+W L
Sbjct: 319 HSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 313 GENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 371
GE +P GHQ E + W+P L S SDD T +W++ H + + +K I+
Sbjct: 173 GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIF 231
Query: 372 TIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSP 428
T + + + + S + D + +WD K ++++ H V L+F+P
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 429 TGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 476
E+ LA+GS DK++ +W L+ K+ + ++ + IF+V W+ + I A
Sbjct: 292 YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 214 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 268
+L + + D + IW T + T+ H + L +N +++L TGS DKT +
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 269 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENR------ 316
WD++ + K FE H V W N A+S TD ++V KIGE +
Sbjct: 309 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 368
Query: 317 ---PIKTF--AGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 359
P F GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 369 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 417
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 193 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 251
+K + +S V +D++ + T Y G+ IW+ ++ ++ + P+ + K+
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 311
+ ++++ GS D V++ T E FE H + + S +D++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 312 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 367
EN +TF GH+ V CV ++P S AS D T K+W++ Q L
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
+ + + + P P++ ++ +AS D T+K+WD + + +L GH V F
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 428 PTGEYLASGSLDKSMHIWSLKEGKIVKT 455
PT + SGS D ++ IW+ K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 19/241 (7%)
Query: 216 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 275 -EWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNC 330
+Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 331 VKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 388
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-------- 241
Query: 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWS 446
I+ S S D T+K+W+ K+ +LN E + +A PTG Y+ASG D + S
Sbjct: 242 -IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLS 299
Query: 447 L 447
L
Sbjct: 300 L 300
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 31/230 (13%)
Query: 216 LATGSYDGQARIWS--TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK 272
+ +GS D ++W+ N L+ T H+ + + +N K C D+T VW +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 273 TEEWKQQFEFHSGPTLDVDWRNNVSF------ATSSTDNMIYVCKIGENRPIKTFAGHQG 326
F +G V++ + T+S D I + + T GH
Sbjct: 172 QS--TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPN 386
V+ + PT ++ S S+D T KIWN K L + + I PTG
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN---- 285
Query: 387 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 436
++ FD+ G + SL G+ EP +L+ P G+ + SG
Sbjct: 286 ----YIASGFDN---------GFTVLSL-GNDEP--TLSLDPVGKLVWSG 319
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 12/268 (4%)
Query: 193 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWN 251
+K + +S V +D++ + T Y G+ +W+ ++ ++ + P+ + K+
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 311
+ ++++ GS D V++ T E FE H + + S +D++
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 312 IGENRPI--KTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE-HS 367
EN +TF GH+ V CV ++P S AS D T K+W++ Q L
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 368 KEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFS 427
+ + + + P P++ ++ +AS D T+K+WD + + +L GH V F
Sbjct: 185 RGVNYVDYYPL------PDKPYMI-TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 428 PTGEYLASGSLDKSMHIWSLKEGKIVKT 455
PT + SGS D ++ IW+ K+ KT
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKT 265
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 19/241 (7%)
Query: 216 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274
+ GS D + R+++ N G+ H I S+ + Y+L+GS D T +W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 275 -EWKQQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNC 330
+Q FE H + V + ++ +FA+ D + V +G++ P T G + VN
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 331 VKWDPT--GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 388
V + P + + SDD+T KIW+ + V L H + + PT
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-------- 241
Query: 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGE--YLASGSLDKSMHIWS 446
I+ S S D T+K+W+ K+ +LN E + +A PTG Y+ASG D + S
Sbjct: 242 -IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLS 299
Query: 447 L 447
L
Sbjct: 300 L 300
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 31/230 (13%)
Query: 216 LATGSYDGQARIWS--TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK 272
+ +GS D ++W+ N L+ T H+ + + +N K C D+T VW +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 273 TEEWKQQFEFHSGPTLDVDWRNNVSF------ATSSTDNMIYVCKIGENRPIKTFAGHQG 326
F +G V++ + T+S D I + + T GH
Sbjct: 172 QS--TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 327 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPN 386
V+ + PT ++ S S+D T KIWN K L + + I PTG
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG------- 282
Query: 387 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASG 436
++ +AS FD+ G + SL G+ EP +L+ P G+ + SG
Sbjct: 283 RKNYIASG-FDN---------GFTVLSL-GNDEP--TLSLDPVGKLVWSG 319
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 107/247 (43%), Gaps = 62/247 (25%)
Query: 215 LLATGSYDGQARIWSTNGDLKCTL-----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 269
+LATGS D + ++ S D + + HK I S+ W L GS D T +W
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 270 DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN 329
K E + FE +D+ + GH+ EV
Sbjct: 86 -AKEESADRTFE------MDL---------------------------LAIIEGHENEVK 111
Query: 330 CVKWDPTGSLLASCSDDVTAKIWNMKQ--DKY--VHDLREHSKEIYTIRWSPTGSGTNNP 385
V W G LA+CS D + IW + ++Y + L+EHS+++ + W P+
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS------- 164
Query: 386 NQQLILASASFDSTVKLW-----DVELGKLLYSLNGHREPVYSLAFSPT-GEY-LASGSL 438
+ +LAS+S+D TV++W D E + LNGH V+S F T G + L SGS
Sbjct: 165 --EALLASSSYDDTVRIWKDYDDDWECVAV---LNGHEGTVWSSDFDKTEGVFRLCSGSD 219
Query: 439 DKSMHIW 445
D ++ +W
Sbjct: 220 DSTVRVW 226
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 35/254 (13%)
Query: 123 SASESFEIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQN 182
SA +FE+ + I+EGH +EV AWS D + IW T G +
Sbjct: 90 SADRTFEMDL--LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE----TDESGEEY 143
Query: 183 GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKC--TLS 239
++VL E S+DV + W+ LLA+ SYD RIW + D +C L+
Sbjct: 144 ECISVL---------QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194
Query: 240 KHKGPIFSLKWNK-KGDY-LLTGSCDKTAIVWDVKTEEWKQQFEF---------HSGPTL 288
H+G ++S ++K +G + L +GS D T VW ++ Q E+ H
Sbjct: 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254
Query: 289 DVDWRNNVSFATSSTDNMIYVCK--IGENRPIKTFAGHQG--EVNCVKWDPTG--SLLAS 342
+V W N A+ D ++ V + GE + A G E+N VKW ++LA+
Sbjct: 255 NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314
Query: 343 CSDDVTAKIWNMKQ 356
DD W++++
Sbjct: 315 GGDDGIVNFWSLEK 328
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 48/284 (16%)
Query: 202 KDVTTLDWNGEGTLLATGSYDGQARIWST--------NGDLKCTLSKHKGPIFSLKWNKK 253
K + ++ W +LLA GS+D IW+ DL + H+ + + W+
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 254 GDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGPTLDVDWR-NNVSFATSSTDNM 306
G YL T S DK+ +W+ T+E +++E HS V W + A+SS D+
Sbjct: 119 GYYLATCSRDKSVWIWE--TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 307 IYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASC--SDDVTAKIWNMKQDKYVHD 362
+ + K ++ + GH+G V +D T + C SDD T ++W D D
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE-DD 235
Query: 363 LRE----------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL-L 411
+E H +++Y + W G ++AS D + +++ G+ +
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAWGFNG----------LIASVGADGVLAVYEEVDGEWKV 285
Query: 412 YSLNGHREPVYSLAFSPTGEY-----LASGSLDKSMHIWSLKEG 450
++ VY + E LA+G D ++ WSL++
Sbjct: 286 FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKA 329
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 334 DPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQL 389
D + +LA+ S D K+ ++K D + V D H K I ++ W P S
Sbjct: 21 DFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS--------- 71
Query: 390 ILASASFDSTVKLWDVELGK-------LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSM 442
+LA+ SFDSTV +W E LL + GH V +A+S G YLA+ S DKS+
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 443 HIWSLKE 449
IW E
Sbjct: 132 WIWETDE 138
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 94/225 (41%), Gaps = 53/225 (23%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289
N DL+ L H+ + L WN +LL+ S D T +WD+
Sbjct: 168 NPDLR--LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISA---------------- 209
Query: 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTG-SLLASCSDDV 347
V K G+ KT F GH V V W SL S +DD
Sbjct: 210 -------------------VPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQ 250
Query: 348 TAKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWD 404
IW+ + + K H + H+ E+ + + NP + ILA+ S D TV LWD
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWD 302
Query: 405 VELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 447
+ KL L+S H++ ++ + +SP E LAS D+ +++W L
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 18/176 (10%)
Query: 313 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 366
GE P GHQ E + W+P +G LL S SDD T +W++ K+ K V
Sbjct: 165 GECNPDLRLRGHQKEGYGLSWNPNLSGHLL-SASDDHTICLWDISAVPKEGKVVD----- 218
Query: 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 423
+K I+T + + + + + S + D + +WD K +S++ H V
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 424 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 476
L+F+P E+ LA+GS DK++ +W L+ K+ + ++ + IF+V W+ + I A
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 334
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 23/169 (13%)
Query: 214 TLLATGSYDGQARIWSTNGDLKC----TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 268
+L + + D + IW T + ++ H + L +N +++L TGS DKT +
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 300
Query: 269 WDVKTEEWK-QQFEFHSGPTLDVDW--RNNVSFATSSTDNMIYV---CKIGENR------ 316
WD++ + K FE H V W N A+S TD + V KIGE +
Sbjct: 301 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE 360
Query: 317 ---PIKTF--AGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKY 359
P F GH +++ W+P ++ S S+D ++W M ++ Y
Sbjct: 361 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIY 409
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289
N DL+ L H+ + L WN +LL+ S D T +WD+ +GP
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-----------AGPK-- 214
Query: 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVT 348
KI + + I F GH V V W SL S +DD
Sbjct: 215 -------------------EGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 349 AKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
IW+ + + K H + H+ E+ + + NP + ILA+ S D TV LWD+
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDL 305
Query: 406 ELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 447
KL L++ H++ ++ + +SP E LAS D+ +++W L
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 313 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 366
GE P GHQ E + W+ +G LL S SDD T +W++ K+ K V
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD----- 220
Query: 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 423
+K I+T + + + + S + D + +WD K + ++ H V
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 424 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 476
L+F+P E+ LA+GS DK++ +W L+ K+ + T+ + IF+V W+ + I A
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 96/224 (42%), Gaps = 51/224 (22%)
Query: 231 NGDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 289
N DL+ L H+ + L WN +LL+ S D T +WD+ +GP
Sbjct: 170 NPDLR--LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDIN-----------AGPK-- 214
Query: 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVT 348
KI + + I F GH V V W SL S +DD
Sbjct: 215 -------------------EGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 349 AKIWNMKQD---KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDV 405
IW+ + + K H + H+ E+ + + NP + ILA+ S D TV LWD+
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSF--------NPYSEFILATGSADKTVALWDL 305
Query: 406 ELGKL-LYSLNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSL 447
KL L++ H++ ++ + +SP E LAS D+ +++W L
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 313 GENRPIKTFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNM----KQDKYVHDLREH 366
GE P GHQ E + W+ +G LL S SDD T +W++ K+ K V
Sbjct: 167 GECNPDLRLRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVD----- 220
Query: 367 SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE---LGKLLYSLNGHREPVYS 423
+K I+T + + + + S + D + +WD K + ++ H V
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 424 LAFSPTGEY-LASGSLDKSMHIWSLKEGKI-VKTYTGNGG-IFEVCWNKEGDKIAA 476
L+F+P E+ LA+GS DK++ +W L+ K+ + T+ + IF+V W+ + I A
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 43/236 (18%)
Query: 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGD 255
E S T + G A+G G RIW T LK T+ GP+ + W+ +
Sbjct: 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-- 114
Query: 256 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----TLDVDWRNNVSFATSSTDNMIY-- 308
+ A V + + E + F F +G T N+V F S +I
Sbjct: 115 ------SKRIAAVGEGR-ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 309 ---VCKIGENRPIK---TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN--------M 354
I E P K TF H V+ V+++P GSL AS D T ++N +
Sbjct: 168 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 355 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL 410
+D + ++ HS ++ + WSP G+ +ASAS D T+K+W+V K+
Sbjct: 228 FEDDSLKNV-AHSGSVFGLTWSPDGTK---------IASASADKTIKIWNVATLKV 273
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 249 KWNKKGDYLLTGSCDKTAIVWDVK--TEEWKQQFEFHSGPTLDVDW---RNNVSFATSST 303
K + G Y +G +WD T K SGP D+ W ++
Sbjct: 66 KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 125
Query: 304 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHD 362
+ +V G +N V + P+ + S SDD T I+ K+
Sbjct: 126 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST 185
Query: 363 LREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN------- 415
EH+K ++++R++P GS + AS D T+ L++ G
Sbjct: 186 FGEHTKFVHSVRYNPDGS---------LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236
Query: 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 455
H V+ L +SP G +AS S DK++ IW++ K+ KT
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 124/326 (38%), Gaps = 43/326 (13%)
Query: 194 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------HKGPI 245
K E +K V ++ +N +G+L A+ DG +++ K + + H G +
Sbjct: 183 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242
Query: 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSS 302
F L W+ G + + S DKT +W+V T + ++ + L + W + S+
Sbjct: 243 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302
Query: 303 TDNMIYV---------CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIW 352
+ +V + G N+ I + D G + + S ++ +++
Sbjct: 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
Query: 353 NMKQDKYVHDLREHSK-EIYTIRW-------SPTGSGT-------NNPNQQLILASASFD 397
+ ++ SK +++T+ W GSG N + Q + + S D
Sbjct: 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 422
Query: 398 STVKLWDVELGKLLYSLNGHREPVYS-----LAFSPTGEYLASGSLDKSMHIWSLKEGKI 452
+ + +YS E S +A S +++A G D +H++ L +
Sbjct: 423 GDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV 482
Query: 453 --VKTYTGNGGIFEVCWNKEGDKIAA 476
VKT I V ++ G + A
Sbjct: 483 SEVKTIVHPAEITSVAFSNNGAFLVA 508
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 46/225 (20%)
Query: 307 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR 364
+Y +G + + H + K P+G AS +IW+ Q ++ +
Sbjct: 41 VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP 100
Query: 365 EHSKEIYTIRWSP----------------------TGSGTNN--------------PNQQ 388
S + I W TG+ N P++
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160
Query: 389 LILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLK 448
+ S S D+TV +++ K + H + V+S+ ++P G AS D ++ +++
Sbjct: 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220
Query: 449 EGK--------IVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCV 485
+G +K +G +F + W+ +G KIA+ A+ T+ +
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ--DKYVHDLREHS-KEIYTIRWSPTGS 380
H +V CV W P LA+ S D + +WNM + D + H+ + ++ W
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL---- 590
Query: 381 GTNNPNQQLILASASFDSTVKLWDVEL 407
+ + SA DS +K W+V
Sbjct: 591 ------NETTIVSAGQDSNIKFWNVPF 611
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 417 HREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGK----IVKTYTGNGGIFEVCWNKEGD 472
H V +++SP LA+GSLD S+ +W++ + I+K + V W E
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594
Query: 473 KIAA 476
++A
Sbjct: 595 IVSA 598
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 27/140 (19%)
Query: 104 ENGVLQGEKGPEPMDIATTSASESFEI----PNSDVTILEG-----------HTSEVCAC 148
NG L G+ M+ S F I ++ V I EG HT V +
Sbjct: 139 SNGNLTGQA--RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV 196
Query: 149 AWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 208
++P D T ++ DGT G ++ L + S V L
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL----------KNVAHSGSVFGLT 246
Query: 209 WNGEGTLLATGSYDGQARIW 228
W+ +GT +A+ S D +IW
Sbjct: 247 WSPDGTKIASASADKTIKIW 266
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 117/265 (44%), Gaps = 20/265 (7%)
Query: 199 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYL 257
++S V ++ W+ +G+ L+ G +G I+ K T++ H+ + L WN+ L
Sbjct: 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH--VL 189
Query: 258 LTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN 315
+GS DV+ + + HS + WR++ + A+ DN++ + +
Sbjct: 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249
Query: 316 RPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKI--WNMKQDKYVHDLREHSKEIYT 372
P T H V V W P +LLA+ + +I WN V+ + + ++ +
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-DAGSQVTS 308
Query: 373 IRWSPTGSGTNNPNQQLILASASF-DSTVKLWDVELGKLLYSLN--GHREPVYSLAFSPT 429
+ WSP + + I+++ F D+ + +W L ++ H V A SP
Sbjct: 309 LIWSP--------HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPD 360
Query: 430 GEYLASGSLDKSMHIWSLKEGKIVK 454
G L++ + D+++ W + +G VK
Sbjct: 361 GRILSTAASDENLKFWRVYDGDHVK 385
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 16/190 (8%)
Query: 290 VDWRNNVSFATSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 348
V W ++ SF + N ++ + + ++T AGHQ V C+ W+ +L+S S
Sbjct: 140 VKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGA 197
Query: 349 AKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407
+++ + + L+ HS E+ + W G L LAS D+ V++WD
Sbjct: 198 IHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG---------LQLASGGNDNVVQIWDARS 248
Query: 408 GKLLYSLNGHREPVYSLAFSPTGEYLAS---GSLDKSMHIWSLKEGKIVKTYTGNGGIFE 464
++ H V ++A+ P L + G++DK +H W+ G V T +
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTS 308
Query: 465 VCWNKEGDKI 474
+ W+ +I
Sbjct: 309 LIWSPHSKEI 318
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 20/158 (12%)
Query: 129 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 188
I N + L+GH+SEVC AW D+ +IW D S+
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW---DARSS----------- 249
Query: 189 VLKHVKGRTNEKSKDVTTLDWNGEGTLLAT--GSYDGQARIWSTNGDLKCTLSKHKGPIF 246
+ K K N K V W + LLAT G+ D Q W+ + +
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPW--QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 247 SLKWNKKGDYLLT--GSCDKTAIVWDVKTEEWKQQFEF 282
SL W+ +++ G D +W + +Q +
Sbjct: 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 179 GAQNGPL---NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL- 234
G+++G + +V + H G S +V L W +G LA+G D +IW +
Sbjct: 192 GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP 251
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLT---GSCDKTAIVWDVKT 273
K T + H + ++ W LL G+ DK W+ T
Sbjct: 252 KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 311 KIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLRE---- 365
++ +N P+ GH V + W P +++AS S+D T +W + V LRE
Sbjct: 69 RVDKNVPL--VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 366 ---HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSL--NGHREP 420
H+K + + W PT Q +L SA D+ + +WDV G + +L + H +
Sbjct: 127 LEGHTKRVGIVAWHPTA--------QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178
Query: 421 VYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 453
+YS+ +S G + + DK + + ++G +V
Sbjct: 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV 211
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 132 NSDVTILEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL 190
+ +V ++ GHT+ V AW P D T +W I DG VL L
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL----------VLPL 120
Query: 191 KHVKGRTNEKSKDVTTLDWN--GEGTLLATGSYDGQARIWST-NGDLKCTLSK--HKGPI 245
+ +K V + W+ + LL+ G D +W G TL H I
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGC-DNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 246 FSLKWNKKGDYLLTGSCDKTAIV 268
+S+ W++ G + T DK V
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRV 202
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 35/214 (16%)
Query: 215 LLATGSYDGQARIWST-NGDLK-------CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKT 265
++A+GS D +W +G L TL H + + W+ + LL+ CD
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 266 AIVWDVKTEEWKQQF--EFHSGPTLDVDW-RNNVSFATSSTDNMIYVCK------IGE-N 315
+VWDV T + H VDW R+ TS D + V + + E +
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD 215
Query: 316 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 375
RP H+G P ++ S +T M + + +H +E +++
Sbjct: 216 RP------HEGT------RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263
Query: 376 SPTGSGT----NNPNQQLILASASFDSTVKLWDV 405
T SG +P+ ++ DS+++ +++
Sbjct: 264 LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 32/190 (16%)
Query: 135 VTILEGHTSEVCACAWSPXXXXXXXXXX-DSTARIWTIADGTSNGGAQNGPLNVLVLKHV 193
V LEGHT V AW P D+ +W + G + VL L
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA----------VLTLG-- 171
Query: 194 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSK-HKG--PIFSLK 249
+ + ++DW+ +G L+ T D + R+ G + + H+G P+ ++
Sbjct: 172 ---PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV- 227
Query: 250 WNKKGDYLLTG---SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-N 305
+ +G L TG ++ +WD K E + ++D + V D N
Sbjct: 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-------ELDTSSGVLLPFFDPDTN 280
Query: 306 MIYVCKIGEN 315
++Y+C G++
Sbjct: 281 IVYLCGKGDS 290
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 213 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 267
G LAT S D +I+ G+ L TL+ H+GP++ + W K G L + S D +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 268 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 327
+W + W Q I A H
Sbjct: 83 IWKEENGRWSQ---------------------------------------IAVHAVHSAS 103
Query: 328 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 379
VN V+W P G LL S D + K++ + H+ + + W+P
Sbjct: 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163
Query: 380 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 432
N + + D+ VK+W D + L +L GH + V +A+SPT Y
Sbjct: 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 223
Query: 433 LASGSLDKSMHIWS 446
LAS S D++ IW+
Sbjct: 224 LASVSQDRTCIIWT 237
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 90/227 (39%), Gaps = 48/227 (21%)
Query: 213 GTLLATGSYDGQARIW-STNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 266
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 267 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 305
+V E+K+ + H+ W + + F T DN
Sbjct: 129 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182
Query: 306 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNM--KQ 356
++ + K + T GH V V W PT S LAS S D T IW +Q
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242
Query: 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403
+ L + K + W + S + N +LA + D+ V LW
Sbjct: 243 GPWKKTLLKEEK-FPDVLWRASWSLSGN-----VLALSGGDNKVTLW 283
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 334 DPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391
D G LA+CS D T KI+ ++ + K + L H ++ + W+ GT IL
Sbjct: 20 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------IL 72
Query: 392 ASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSL 447
AS S+D V +W E G+ + H V S+ ++P G L S D + +
Sbjct: 73 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 132
Query: 448 KE 449
KE
Sbjct: 133 KE 134
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 408 GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---KIVKTYTGN-GGIF 463
G ++ N H E ++ G+ LA+ S DK++ I+ + EG K++ T TG+ G ++
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVW 59
Query: 464 EVCWN--KEGDKIAACFANHTVCV 485
V W K G +A+C + V +
Sbjct: 60 RVDWAHPKFGTILASCSYDGKVLI 83
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 136 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 192
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 251
Query: 193 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 231
EK DV W+ G +LA D + +W N
Sbjct: 252 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 213 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 267
G LAT S D +I+ G+ L TL+ H+GP++ + W K G L + S D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 268 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 327
+W + W Q I A H
Sbjct: 81 IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 328 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 379
VN V+W P G LL S D + K++ + H+ + + W+P
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 380 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 432
N + + D+ VK+W D + L +L GH + V +A+SPT Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 433 LASGSLDKSMHIWS 446
LAS S D++ IW+
Sbjct: 222 LASVSQDRTCIIWT 235
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 54/230 (23%)
Query: 213 GTLLATGSYDGQARIW-STNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 266
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 267 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 305
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 306 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNM--KQ 356
++ + K + T GH V V W PT S LAS S D T IW +Q
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 357 DKYVHDLREHSK---EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403
+ L + K ++ WS +G+ +LA + D+ V LW
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASWSLSGN---------VLALSGGDNKVTLW 281
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 334 DPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391
D G LA+CS D T KI+ ++ + K + L H ++ + W+ GT IL
Sbjct: 18 DYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------IL 70
Query: 392 ASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSL 447
AS S+D V +W E G+ + H V S+ ++P G L S D + +
Sbjct: 71 ASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130
Query: 448 KE 449
KE
Sbjct: 131 KE 132
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 415 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---KIVKTYTGN-GGIFEVCWN-- 468
N H E ++ G+ LA+ S DK++ I+ + EG K++ T TG+ G ++ V W
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 469 KEGDKIAACFANHTVCV 485
K G +A+C + V +
Sbjct: 65 KFGTILASCSYDGKVLI 81
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 136 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 192
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 249
Query: 193 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 231
EK DV W+ G +LA D + +W N
Sbjct: 250 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 100/262 (38%), Gaps = 61/262 (23%)
Query: 205 TTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLT 259
LD+ G+ LAT S D +I+ G+ L TL+ H+GP++ + W K G L +
Sbjct: 15 AVLDYYGKR--LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 72
Query: 260 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK 319
S D ++W + W Q I
Sbjct: 73 CSYDGKVLIWKEENGRWSQ---------------------------------------IA 93
Query: 320 TFAGHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRW 375
A H VN V+W P G LL S D + K++ + H+ + + W
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Query: 376 SPT----GSGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFS 427
+P N + + D+ VK+W D + L +L GH + V +A+S
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 428 PT---GEYLASGSLDKSMHIWS 446
PT YLAS S D++ IW+
Sbjct: 214 PTVLLRSYLASVSQDRTCIIWT 235
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 90/227 (39%), Gaps = 48/227 (21%)
Query: 213 GTLLATGSYDGQARIW-STNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 266
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 267 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 305
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 306 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNM--KQ 356
++ + K + T GH V V W PT S LAS S D T IW +Q
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240
Query: 357 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403
+ L + K + W + S + N +LA + D+ V LW
Sbjct: 241 GPWKKTLLKEEK-FPDVLWRASWSLSGN-----VLALSGGDNKVTLW 281
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 13/133 (9%)
Query: 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGS 380
H ++ D G LA+CS D T KI+ ++ + K + L H ++ + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSP--TGEYLASG 436
GT ILAS S+D V +W E G+ + H V S+ ++P G L
Sbjct: 67 GT-------ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119
Query: 437 SLDKSMHIWSLKE 449
S D + + KE
Sbjct: 120 SSDGKVSVVEFKE 132
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 415 NGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---KIVKTYTGN-GGIFEVCWN-- 468
N H E ++ G+ LA+ S DK++ I+ + EG K++ T TG+ G ++ V W
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 469 KEGDKIAACFANHTVCV 485
K G +A+C + V +
Sbjct: 65 KFGTILASCSYDGKVLI 81
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 136 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 192
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-------EQGPWKKTLLKE 250
Query: 193 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 231
EK DV W+ G +LA D + +W N
Sbjct: 251 ------EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 96/254 (37%), Gaps = 59/254 (23%)
Query: 213 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 267
G +AT S D +I+ G+ L TL+ H+GP++ + W K G L + S D +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 268 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 327
+W + W Q I A H
Sbjct: 81 IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 328 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 379
VN V+W P G +L S D + K++ + H+ + + W+P
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 380 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 432
N + + D+ VK+W D + L +L GH + V +A+SPT Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 433 LASGSLDKSMHIWS 446
+AS S D++ IW+
Sbjct: 222 MASVSQDRTCIIWT 235
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 91/230 (39%), Gaps = 54/230 (23%)
Query: 213 GTLLATGSYDGQARIW-STNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 266
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 267 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 305
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 306 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNM--KQ 356
++ + K + T GH V V W PT S +AS S D T IW +Q
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240
Query: 357 DKYVHDLREHSK---EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLW 403
+ L + K ++ WS +G+ +LA + D+ V LW
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASWSLSGN---------VLALSGGDNKVTLW 281
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 334 DPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391
D G +A+CS D T KI+ ++ + K + L H ++ + W+ GT IL
Sbjct: 18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------IL 70
Query: 392 ASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSL 447
AS S+D V +W E G+ + H V S+ ++P G L S D + +
Sbjct: 71 ASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF 130
Query: 448 KE 449
KE
Sbjct: 131 KE 132
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 136 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 192
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 249
Query: 193 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 231
EK DV W+ G +LA D + +W N
Sbjct: 250 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 410 LLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEG---KIVKTYTGN-GGIFEV 465
++ N H E ++ G+ +A+ S DK++ I+ + EG K++ T TG+ G ++ V
Sbjct: 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEV-EGETHKLIDTLTGHEGPVWRV 59
Query: 466 CWN--KEGDKIAACFANHTVCV 485
W K G +A+C + V +
Sbjct: 60 DWAHPKFGTILASCSYDGKVMI 81
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 377
+GH V+ V +D G +A+CS D K++ + +D +L R H I I W+
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 378 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 428
+P I+ASAS+D TVKLW+ + + L +LN + +YS+ F+P
Sbjct: 67 ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
Query: 429 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 457
G LA D + ++ E ++++T
Sbjct: 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 151
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIW 352
H GEV V W+ TG++L+S DD ++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 204 VTTLDWNGE--GTLLATGSYDGQARIWSTNGDLK----------CTLSKHKGPIFSLKW 250
+ +DW G ++A+ SYD ++W + D + CTL+ KG ++S+K+
Sbjct: 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF 118
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 203 DVTTLDWNGEGTLLATGSYDGQARIW--STNGDLKC 236
+V ++ WN GT+L++ DG+ R+W + + + KC
Sbjct: 308 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 377
+GH V+ V +D G +A+CS D K++ + +D +L R H I I W+
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 64
Query: 378 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 428
+P I+ASAS+D TVKLW+ + + L +LN + +YS+ F+P
Sbjct: 65 ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 118
Query: 429 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 457
G LA D + ++ E ++++T
Sbjct: 119 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 149
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIW 352
H GEV V W+ TG++L+S DD ++W
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 204 VTTLDWNGE--GTLLATGSYDGQARIWSTNGDLK----------CTLSKHKGPIFSLKW 250
+ +DW G ++A+ SYD ++W + D + CTL+ KG ++S+K+
Sbjct: 58 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF 116
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 203 DVTTLDWNGEGTLLATGSYDGQARIW--STNGDLKC 236
+V ++ WN GT+L++ DG+ R+W + + + KC
Sbjct: 306 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 341
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 115/290 (39%), Gaps = 51/290 (17%)
Query: 202 KDVTTLDWNGEGTLLATGSYDGQARIW-STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 260
+ +T + +N EG LL + S D A +W S NG+ TL H G I+S+ + Y +TG
Sbjct: 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
Query: 261 SCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVDWRNNVSFATSSTDNM--------IY 308
S D + +WDV + WK P V++ ++ + DN+ IY
Sbjct: 93 SADYSIKLWDVSNGQCVATWKSPV-----PVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147
Query: 309 ----------VCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 356
+ K+ E PI H+G W G + + D +++
Sbjct: 148 EIERDSATHELTKVSE-EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 357 D-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLN 415
+ +YV + H K I +++SP ++S D+ L DV ++L
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSP---------DLTYFITSSRDTNSFLVDVSTLQVLKKYE 257
Query: 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEV 465
P+ + +P E++ G +E K V T + N G FE
Sbjct: 258 TDC-PLNTAVITPLKEFIILG---------GGQEAKDVTTTSANEGKFEA 297
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 18/233 (7%)
Query: 238 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP--TLDVDWRNN 295
L+ H+ P+ +K+NK+GD L + S D +A VW E + H+G ++DVD
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 296 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-----TAK 350
T S D I + + + + T+ V V++ P G+ + D+V +
Sbjct: 88 YC-VTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145
Query: 351 IWNMKQDKYVHDLREHSKE-IYTIRW-----SPTGSGTNNPNQQLILASASFDSTVKLWD 404
I+ +++D H+L + S+E I+ I + T +G + + +I D + +D
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK--DGKISKYD 203
Query: 405 VELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456
V + + S++ H + + + FSP Y + S D + + + +++K Y
Sbjct: 204 VSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 414 LNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWNKEGDK 473
L GH P+ + ++ G+ L S S D S +W G+ + T G+ G W+ + D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG---TIWSIDVD- 83
Query: 474 IAACFANHTV 483
CF + V
Sbjct: 84 ---CFTKYCV 90
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 22/151 (14%)
Query: 322 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSP 377
+GH V+ V +D G +A+CS D K++ + +D +L R H I I W+
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWA- 66
Query: 378 TGSGTNNPNQQLILASASFDSTVKLWDVELGK---------LLYSLNGHREPVYSLAFSP 428
+P I+ASAS+D TVKLW+ + + L +LN + +YS+ F+P
Sbjct: 67 ------SPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP 120
Query: 429 T--GEYLASGSLDKSMHIWSLKEGKIVKTYT 457
G LA D + ++ E ++++T
Sbjct: 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWT 151
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIW 352
H GEV V W+ TG++L+S DD ++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 204 VTTLDWNGE--GTLLATGSYDGQARIWSTNGDLK----------CTLSKHKGPIFSLKW 250
+ +DW G ++A+ SYD ++W + D + CTL+ KG ++S+K+
Sbjct: 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKF 118
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 203 DVTTLDWNGEGTLLATGSYDGQARIW--STNGDLKC 236
+V ++ WN GT+L++ DG+ R+W + + + KC
Sbjct: 308 EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 110/274 (40%), Gaps = 50/274 (18%)
Query: 213 GTLLATGSYDGQARIWST-NGD--LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAI 267
GT LAT S D +I+ NG L L H+GP++ + W G+ L + S D+ I
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 268 VWDVKTEEWKQQFEF--HSGPTLDVDWRNN---VSFATSSTDNMIYVCKI---GENRPIK 319
+W + W++ E H V W + + A S+D I + G+ K
Sbjct: 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Query: 320 TFAGHQGEVNCVKWDPT---GSLL--------------ASCSDDVTAKIWNMKQD---KY 359
H N V W P GSL+ AS D K+W ++D K
Sbjct: 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204
Query: 360 VHDLREHSKEIYTIRWSPT-GSGTNNPNQQLILASASFDSTVKLWDVELG-------KLL 411
L HS + + W+P+ G T+ +AS S D V +W + KLL
Sbjct: 205 EQKLEAHSDWVRDVAWAPSIGLPTST------IASCSQDGRVFIWTCDDASSNTWSPKLL 258
Query: 412 YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
+ N + V+ +++S T LA D + +W
Sbjct: 259 HKFN---DVVWHVSWSITANILAVSGGDNKVTLW 289
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 391 LASASFDSTVKLWDVELGK--LLYSLNGHREPVYSLAFSPT--GEYLASGSLDKSMHIWS 446
LA+ S D +VK++DV G L+ L GH PV+ +A++ G LAS S D+ + IW
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 447 LKEGKIVKTYTGNG---GIFEVCW 467
+ G K++ G + VCW
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSVCW 111
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 110/275 (40%), Gaps = 76/275 (27%)
Query: 216 LATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 274
+A+ S DG R+WS + L + +G + S+ ++ + + LL G D
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXI-------- 83
Query: 275 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 334
+G L FATS D P+ T GHQG V + +
Sbjct: 84 ---------NGVPL---------FATSGED------------PLYTLIGHQGNVCSLSFQ 113
Query: 335 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-------------------TIR- 374
++ S S D TAK+W K+ V++L+ H+ ++ TI+
Sbjct: 114 D--GVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169
Query: 375 WS-----PTGSGTNNPNQQLI-------LASASFDSTVKLWDVELGKLLYSLNGHREPVY 422
W T SG +N + + S S D +KL D G +L + GH VY
Sbjct: 170 WQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY 229
Query: 423 SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYT 457
+ P G+ ++ G D+++ IWS + G + + T
Sbjct: 230 CIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVIT 263
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 209 WNGEGTLLATGSYDGQAR---IWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 264
++ E LL G D +++T+G D TL H+G + SL + + +++GS DK
Sbjct: 67 YDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDK 124
Query: 265 TAIVWDVKTEEWKQQFEFHSGPTLD---VDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 321
TA VW K + H+ D V + N F T+S D I + + ++ IKTF
Sbjct: 125 TAKVW--KEGSLVYNLQAHNASVWDAKVVSFSEN-KFLTASADKTIKLWQ--NDKVIKTF 179
Query: 322 AG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 380
+G H V + G + SCS+D K+ + + H +Y I+ P G
Sbjct: 180 SGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD 238
Query: 381 GTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDK 440
+ S D TV++W E G L + ++S+ G+ + GS D
Sbjct: 239 ----------IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDN 287
Query: 441 SMHIWSLKEGK 451
+ I+S ++ +
Sbjct: 288 LVRIFSQEKSR 298
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 189 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFS 247
V+K G N+ + + +D +G ++ S DG ++ + GD+ T H+ ++
Sbjct: 175 VIKTFSGIHNDVVRHLAVVD---DGHFISC-SNDGLIKLVDXHTGDVLRTYEGHESFVYC 230
Query: 248 LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMI 307
+K GD + G D+T +W + KQ + VD +N S+DN++
Sbjct: 231 IKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLV 289
Query: 308 YV 309
+
Sbjct: 290 RI 291
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 55/265 (20%)
Query: 209 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 265
WN + T +A + + I+ +G+ L +H G + + W + ++T D+
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 266 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 314
A VW +K WK + V W N FA S +I +C +
Sbjct: 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 315 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372
+PI++ V + W P LLA+ S D +I++ Y+ ++ E
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 373 IRWSPTGSGTNNPNQQLILASA---------------------SFDSTVKLWDVELGKLL 411
R +PT G+ P +L+ S+ S DSTV L D + +
Sbjct: 179 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237
Query: 412 YSLNGHREPVYSLAFSPTGEYLASG 436
+L P+ ++ F +A+G
Sbjct: 238 ATLASETLPLLAVTFITESSLVAAG 262
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSG 381
H G+V + W P + + +C D A +W +K + L ++ +RW+P
Sbjct: 51 HNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 382 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 441
+ +++ F+ W + K R V SL + P LA+GS D
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLLAAGSCDFK 165
Query: 442 MHIWS--LKEGK-----------------IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 482
I+S +KE + + ++ + G + VC++ G ++A + T
Sbjct: 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225
Query: 483 VCVLD 487
VC+ D
Sbjct: 226 VCLAD 230
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 189 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 230
V KH+K V +LDW+ LLA GS D + RI+S
Sbjct: 133 VCKHIKKPIRST---VLSLDWHPNSVLLAAGSCDFKCRIFSA 171
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL----KHV 193
L+ H +V W+P D A +WT+ G L +L + + V
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTL-----KGRTWKPTLVILRINRAARCV 102
Query: 194 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 253
+ NEK V G G+ + + Y Q W +K + + + SL W+
Sbjct: 103 RWAPNEKKFAV------GSGSRVISICYFEQENDWWVCKHIKKPI---RSTVLSLDWHPN 153
Query: 254 GDYLLTGSCDKTAIVWDVKTEE 275
L GSCD ++ +E
Sbjct: 154 SVLLAAGSCDFKCRIFSAYIKE 175
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 93/246 (37%), Gaps = 44/246 (17%)
Query: 241 HKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQF-------------EFHSGP 286
H G I +L +G Y+L+G D +++D++ + + + H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 287 TLDVDW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS---LLA 341
V W + F +SS D + V + F + V P + L+A
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVA 160
Query: 342 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVK 401
+ ++ ++K H L+ H +EI + WSP ILA+AS DS VK
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP--------RYDYILATASADSRVK 212
Query: 402 LWDVELGK-LLYSLN---------------GHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
LWDV L +L+ H V L F+ G +L + D M +W
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 446 SLKEGK 451
+ G+
Sbjct: 273 NSSNGE 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 31/233 (13%)
Query: 215 LLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVK 272
L+A G+ + ++ +G L H+ I ++ W+ + DY+L T S D +WDV+
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 273 TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK 332
SG + +D N + N H G+VN +
Sbjct: 218 RA---------SGCLITLDQHNGKKSQAVESAN----------------TAHNGKVNGLC 252
Query: 333 WDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 392
+ G L + D ++WN + + L + K + + + + + +
Sbjct: 253 FTSDGLHLLTVGTDNRMRLWNSSNGE--NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV 310
Query: 393 SASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
+ ST+ ++ V G+ + L GH + V F + L SGS D ++ W
Sbjct: 311 P--YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 107 VLQGEKGP--EPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX-XXXXXXXXD 163
V G +GP + D+ + S S IL+GH E+ A +WSP D
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSH----------ILQGHRQEILAVSWSPRYDYILATASAD 208
Query: 164 STARIWTIADGTS---NGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 220
S ++W + + NG + + V+ + V L + +G L T
Sbjct: 209 SRVKLWDVRRASGCLITLDQHNGKKS----QAVESANTAHNGKVNGLCFTSDGLHLLTVG 264
Query: 221 YDGQARIW-STNGD 233
D + R+W S+NG+
Sbjct: 265 TDNRMRLWNSSNGE 278
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/298 (18%), Positives = 96/298 (32%), Gaps = 60/298 (20%)
Query: 85 HPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSE 144
HPD +V E V P + G+ + + + T+ ++ ++ N + T+ H S
Sbjct: 94 HPDVHRYSV--ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSP 151
Query: 145 VCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 204
V + + +A GT Q L H+ +++
Sbjct: 152 V-------------------STKHCLVAVGTRGPKVQLCDLKSGSCSHI---LQGHRQEI 189
Query: 205 TTLDWNGE-GTLLATGSYDGQARIWSTNGDLKCTL-----------------SKHKGPIF 246
+ W+ +LAT S D + ++W C + + H G +
Sbjct: 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN 249
Query: 247 SLKWNKKGDYLLTGSCDKTAIVWDVKTEE------------WKQQFEFHSGPTLDVDWRN 294
L + G +LLT D +W+ E K+ +F T+ +
Sbjct: 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF----TVSCGCSS 305
Query: 295 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 352
F + +Y GE I GH V+C + L S S D W
Sbjct: 306 EFVFVPYGSTIAVYTVYSGEQ--ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 55/265 (20%)
Query: 209 WNGEGTLLATGSYDGQARIWSTNGDLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKT 265
WN + T +A + + I+ +G+ L +H G + + W + ++T D+
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 266 AIVWDVKTEEWKQQFEFH--SGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE-------- 314
A VW +K WK + V W N FA S +I +C +
Sbjct: 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 315 --NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 372
+PI++ V + W P LLA+ S D +I++ Y+ ++ E
Sbjct: 136 HIKKPIRS------TVLSLDWHPNSVLLAAGSCDFKCRIFS----AYIKEVEE------- 178
Query: 373 IRWSPTGSGTNNPNQQLILASA---------------------SFDSTVKLWDVELGKLL 411
R +PT G+ P +L+ S+ S DSTV L D + +
Sbjct: 179 -RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237
Query: 412 YSLNGHREPVYSLAFSPTGEYLASG 436
+L P+ ++ F +A+G
Sbjct: 238 ATLASETLPLLAVTFITESSLVAAG 262
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL--REHSKEIYTIRWSPTGSG 381
H G+V V W P + + +C D A +W +K + L ++ +RW+P
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110
Query: 382 TNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKS 441
+ +++ F+ W + K R V SL + P LA+GS D
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIK-----KPIRSTVLSLDWHPNSVLLAAGSCDFK 165
Query: 442 MHIWS--LKEGK-----------------IVKTYTGNGGIFEVCWNKEGDKIAACFANHT 482
I+S +KE + + ++ + G + VC++ G ++A + T
Sbjct: 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225
Query: 483 VCVLD 487
VC+ D
Sbjct: 226 VCLAD 230
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 189 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 230
V KH+K V +LDW+ LLA GS D + RI+S
Sbjct: 133 VCKHIKKPIRST---VLSLDWHPNSVLLAAGSCDFKCRIFSA 171
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 138 LEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL----KHV 193
L+ H +V W+P D A +WT+ G L +L + + V
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL-----KGRTWKPTLVILRINRAARCV 102
Query: 194 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK 253
+ NEK V G G+ + + Y Q W +K + + + SL W+
Sbjct: 103 RWAPNEKKFAV------GSGSRVISICYFEQENDWWVCKHIKKPI---RSTVLSLDWHPN 153
Query: 254 GDYLLTGSCDKTAIVWDVKTEE 275
L GSCD ++ +E
Sbjct: 154 SVLLAAGSCDFKCRIFSAYIKE 175
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 213 GTLLATGSYDGQARIWSTNGDLKCTLSK----HKGPIFSLKWNKKGDYLLTGSCDKTAIV 268
G L GS+ R W D T+ K H GP+ + W+ G + T SCDKTA +
Sbjct: 54 GNFLIAGSWANDVRCWEVQ-DSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112
Query: 269 WDVKTEEWKQQFEFHSGPTLDVDW 292
WD+ + + Q H P + W
Sbjct: 113 WDLSSNQ-AIQIAQHDAPVKTIHW 135
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 195 GRTNEKSKDVTT---LD--WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK 249
G+T K++ + T LD W+ +G+ + T S D A++W + + +++H P+ ++
Sbjct: 75 GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIH 134
Query: 250 WNKKGDY--LLTGSCDKTAIVWDVKT 273
W K +Y ++TGS DKT WD ++
Sbjct: 135 WIKAPNYSCVMTGSWDKTLKFWDTRS 160
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 383
H G V V W GS + + S D TAK+W++ ++ + + +H + TI W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHW------IK 137
Query: 384 NPNQQLILASASFDSTVKLWDVELGKLLYSL 414
PN ++ + S+D T+K WD + L
Sbjct: 138 APNYSCVM-TGSWDKTLKFWDTRSSNPMMVL 167
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 390 ILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPT---GEYLASGSLDKSMHIWS 446
+ SA+ D+ + D+E+ + + + L+FSP G +L +GS + W
Sbjct: 17 MFGSATTDNHNPMKDIEV------TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE 70
Query: 447 LKEG-----KIVKTYTGNGGIFEVCWNKEGDKI--AAC 477
+++ K + +TG + +VCW+ +G K+ A+C
Sbjct: 71 VQDSGQTIPKAQQMHTG--PVLDVCWSDDGSKVFTASC 106
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 390 ILASASFDSTVKLWDVELG--KLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
L + S+ + V+ W+V+ + + H PV + +S G + + S DK+ +W L
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 448 KEGKIVKTYTGNGGIFEVCWNK 469
+ ++ + + + W K
Sbjct: 116 SSNQAIQIAQHDAPVKTIHWIK 137
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 92/254 (36%), Gaps = 59/254 (23%)
Query: 213 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAI 267
G AT S D +I+ G+ L TL+ H+GP++ + W K G L + S D
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 268 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 327
+W + W Q I A H
Sbjct: 81 IWKEENGRWSQ---------------------------------------IAVHAVHSAS 101
Query: 328 VNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPT----G 379
VN V+W P G L S D + K++ + H+ + + W+P
Sbjct: 102 VNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161
Query: 380 SGTNNPNQQLILASASFDSTVKLW----DVELGKLLYSLNGHREPVYSLAFSPT---GEY 432
N + + D+ VK+W D + L +L GH + V +A+SPT Y
Sbjct: 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221
Query: 433 LASGSLDKSMHIWS 446
AS S D++ IW+
Sbjct: 222 XASVSQDRTCIIWT 235
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 91/234 (38%), Gaps = 54/234 (23%)
Query: 213 GTLLATGSYDGQARIW-STNGDLK--CTLSKHKGPIFSLKW--NKKGDYLLTGSCD-KTA 266
GT+LA+ SYDG+ IW NG + H + S++W ++ G LL S D K +
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVS 126
Query: 267 IVWDVKTEEWKQQ-------FEFHSGPTLDVDW--------------RNNVSFATSSTDN 305
+V E+K+ + H+ W + + F T DN
Sbjct: 127 VV------EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180
Query: 306 MIYVCKIGENRPI----KTFAGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNM--KQ 356
++ + K + T GH V V W PT S AS S D T IW +Q
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQ 240
Query: 357 DKYVHDLREHSK---EIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVEL 407
+ L + K ++ WS +G+ +LA + D+ V LW L
Sbjct: 241 GPWKKTLLKEEKFPDVLWRASWSLSGN---------VLALSGGDNKVTLWKENL 285
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Query: 334 DPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 391
D G A+CS D T KI+ ++ + K + L H ++ + W+ GT IL
Sbjct: 18 DYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-------IL 70
Query: 392 ASASFDSTVKLWDVELGKL--LYSLNGHREPVYSLAFSP--TGEYLASGSLDKSMHIWSL 447
AS S+D V +W E G+ + H V S+ ++P G L S D + +
Sbjct: 71 ASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEF 130
Query: 448 KE 449
KE
Sbjct: 131 KE 132
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 17/100 (17%)
Query: 136 TILEGHTSEVCACAWSPX---XXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH 192
+ LEGH+ V AWSP D T IWT + + GP +LK
Sbjct: 198 STLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDN-------EQGPWKKTLLK- 249
Query: 193 VKGRTNEKSKDVT-TLDWNGEGTLLATGSYDGQARIWSTN 231
EK DV W+ G +LA D + +W N
Sbjct: 250 -----EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 423
+ H EI +++ P+G L S+S D +K+W V+ G +L GHR V
Sbjct: 133 QAHVSEITKLKFFPSGEA---------LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 183
Query: 424 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456
+A G + S SLD ++ +W G + T+
Sbjct: 184 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 9/171 (5%)
Query: 250 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 309
+ K G +L D +++ + + + +D F +T+ I V
Sbjct: 61 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 120
Query: 310 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 369
N + H E+ +K+ P+G L S S D+ KIW++K L H
Sbjct: 121 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 180
Query: 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 420
+ I G + SAS D T++LW+ G +++ N P
Sbjct: 181 VTDIAIIDRGRN---------VLSASLDGTIRLWECGTGTTIHTFNRKENP 222
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 458
H + L F P+GE L S S D + IWS+K+G +T G
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 176
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 364 REHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYS 423
+ H EI +++ P+G L S+S D +K+W V+ G +L GHR V
Sbjct: 136 QAHVSEITKLKFFPSGEA---------LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTD 186
Query: 424 LAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTY 456
+A G + S SLD ++ +W G + T+
Sbjct: 187 IAIIDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 9/171 (5%)
Query: 250 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 309
+ K G +L D +++ + + + +D F +T+ I V
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKV 123
Query: 310 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 369
N + H E+ +K+ P+G L S S D+ KIW++K L H
Sbjct: 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 183
Query: 370 IYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 420
+ I G + SAS D T++LW+ G +++ N P
Sbjct: 184 VTDIAIIDRGRN---------VLSASLDGTIRLWECGTGTTIHTFNRKENP 225
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 416 GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTG 458
H + L F P+GE L S S D + IWS+K+G +T G
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 283 HSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGE-------NRPIKTFAGHQGEVNCVKW 333
H+ P LD+ W N+ A+ S D + V +I + P+ T GH V V W
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 334 DPTG-SLLASCSDDVTAKIWNMKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLI 390
PT ++L S D +W++ V L H IY++ WS G+ +
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA---------L 190
Query: 391 LASASFDSTVKLWDVELGKLLYSLNGHRE---PVYSLAFSPTGEYLASG 436
+ ++ D V++ + G ++ + E PV+++ F G+ L +G
Sbjct: 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG 238
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 132 NSDVTILEGHTSEVCACAWSPXX-XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVL 190
+ +V ++ GHT+ V AW P D T +W I DG VL L
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGL----------VLPL 120
Query: 191 KHVKGRTNEKSKDVTTLDWN--GEGTLLATGSYDGQARIWST-NGDLKCTLSK--HKGPI 245
+ +K V + W+ + LL+ G D +W G TL H I
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGX-DNVILVWDVGTGAAVLTLGPDVHPDTI 179
Query: 246 FSLKWNKKGDYLLTGSCDKTAIV 268
+S+ W++ G + T DK V
Sbjct: 180 YSVDWSRDGALICTSCRDKRVRV 202
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 32/190 (16%)
Query: 135 VTILEGHTSEVCACAWSPXXXXXXXXX-XDSTARIWTIADGTSNGGAQNGPLNVLVLKHV 193
V LEGHT V AW P D+ +W + G + VL L
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAA----------VLTLG-- 171
Query: 194 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR-IWSTNGDLKCTLSK-HKG--PIFSLK 249
+ + ++DW+ +G L+ T D + R I G + + H+G P+ ++
Sbjct: 172 ---PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV- 227
Query: 250 WNKKGDYLLTG---SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-N 305
+ +G L TG ++ +WD K E + ++D + V D N
Sbjct: 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-------ELDTSSGVLLPFFDPDTN 280
Query: 306 MIYVCKIGEN 315
++Y+C G++
Sbjct: 281 IVYLCGKGDS 290
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 414 LNGHREPVYSLAFSPTGE-YLASGSLDKSMHIWSLKEGKIV 453
+ GH PV +A+ P + +ASGS D ++ +W + +G +V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLV 117
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 338 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397
S + D+V I K + +LR H K++ + NP LA+AS D
Sbjct: 222 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 273
Query: 398 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449
TVK+WD+ LYSL HR PV + FSP G L + + ++S +
Sbjct: 274 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 328
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 206 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK 264
+LD + ++ TG G + + +G L HK + + N D+ L T S D+
Sbjct: 215 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 274
Query: 265 TAIVWDVKTEEWKQQFEF 282
T +WD++ K F +
Sbjct: 275 TVKIWDLRQVRGKASFLY 292
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 20/215 (9%)
Query: 245 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----TLDVDWRNNVSFAT 300
I S K G L+ G T +WD+ + + E S L + + V F+
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 360
S D I V + ++ F GH +C+ G+ L + D T + W++++ +
Sbjct: 160 CS-DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-- 216
Query: 361 HDLREH--SKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 418
L++H + +I+++ + PTG LA S V++ V Y L+ H
Sbjct: 217 -QLQQHDFTSQIFSLGYCPTGE---------WLAVGMESSNVEVLHVNKPD-KYQLHLHE 265
Query: 419 EPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIV 453
V SL F+ G++ S D ++ W G +
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 11/161 (6%)
Query: 328 VNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNP 385
+ K P G L + T IW++ + +L + Y + SP
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK----- 154
Query: 386 NQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
+ S D + +WD+ L+ GH + + S G L +G LD ++ W
Sbjct: 155 ----VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 446 SLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTVCVL 486
L+EG+ ++ + IF + + G+ +A + V VL
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 212 EGTLLATGSYDGQARIW---STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 268
+G L G IW + +K L+ ++L + + D V
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 269 WDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 327
WD+ + +QF+ H+ +D N+ T DN + + E R ++ +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQ 226
Query: 328 VNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPN 386
+ + + PTG LA + ++ ++ K DKY L H + +++++ G
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGK------ 278
Query: 387 QQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446
S D+ + W G ++ + V S S +Y+ +GS DK ++
Sbjct: 279 ---WFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
Query: 447 L 447
+
Sbjct: 335 V 335
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Query: 186 NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 245
N +++ +G T+ S +D + +GT L TG D R W + I
Sbjct: 172 NQTLVRQFQGHTDGAS----CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227
Query: 246 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTD 304
FSL + G++L G V V + K Q H L + + F ++ D
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 305 NMI 307
N++
Sbjct: 287 NLL 289
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 338 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397
S + D+V I K + +LR H K++ + NP LA+AS D
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 272
Query: 398 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449
TVK+WD+ LYSL HR PV + FSP G L + + ++S +
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 206 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK 264
+LD + ++ TG G + + +G L HK + + N D+ L T S D+
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 265 TAIVWDVKTEEWKQQFEF 282
T +WD++ K F +
Sbjct: 274 TVKIWDLRQVRGKASFLY 291
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 338 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFD 397
S + D+V I K + +LR H K++ + NP LA+AS D
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV--------ALNPCCDWFLATASVD 272
Query: 398 STVKLWDVEL----GKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449
TVK+WD+ LYSL HR PV + FSP G L + + ++S +
Sbjct: 273 QTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 206 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK 264
+LD + ++ TG G + + +G L HK + + N D+ L T S D+
Sbjct: 214 SLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 265 TAIVWDVKTEEWKQQFEF 282
T +WD++ K F +
Sbjct: 274 TVKIWDLRQVRGKASFLY 291
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 116/272 (42%), Gaps = 38/272 (13%)
Query: 207 LDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLL-TG 260
LDW+ ++A +G ++STN + S H + ++K+N K D +L +G
Sbjct: 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG 132
Query: 261 SCDKTAIVWDVK--TEEWKQQFEFHSGPTL-------DVDWRNNVS--FATSSTDNMIYV 309
+ +WD+ TE G ++ + W +++ FA++ + N +
Sbjct: 133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASI 192
Query: 310 CKIGENRPIKTF------AGHQGEVNCVKWDPTGSLLASCS----DDVTAKIWNMKQ-DK 358
+ + + +G + +++ V+W P S + + +D + IW+++ +
Sbjct: 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT 252
Query: 359 YVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGH 417
+ L + H K I ++ W + ++ L+L+S D+TV LW+ E + L
Sbjct: 253 PLQTLNQGHQKGILSLDWC-------HQDEHLLLSSGR-DNTVLLWNPESAEQLSQFPAR 304
Query: 418 REPVYSLAFSPTG-EYLASGSLDKSMHIWSLK 448
+ F+P + A S D + + +L+
Sbjct: 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 298 FATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 355
F T++ N + + + N + +TF+ H V CV W P + + +CS D A ++ +
Sbjct: 26 FVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85
Query: 356 QD---KYVHDLREHSKEIYTIRWSP------TGSGTNNPNQQLILASASFDSTVKLW-DV 405
D K L ++ +RWSP GSG +++ F+ W
Sbjct: 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSK 139
Query: 406 ELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446
L + L R + SL + P LA+G D+ ++ S
Sbjct: 140 HLKRPL------RSTILSLDWHPNNVLLAAGCADRKAYVLS 174
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 209 WNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 265
+N + T T + Q ++ +G+ T S H + + W K + ++T S D+
Sbjct: 19 FNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN 78
Query: 266 AIVWDVKTE-EWKQQ---FEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE------ 314
A V++ + + WKQ + T V W N FA S +I VC +
Sbjct: 79 AYVYEKRPDGTWKQTLVLLRLNRAATF-VRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137
Query: 315 ----NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 363
RP+++ + + W P LLA+ D A + YV D+
Sbjct: 138 SKHLKRPLRS------TILSLDWHPNNVLLAAGCADRKAYV----LSAYVRDV 180
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 279 QFEFHSGPTLDVDWRNNVSFATSSTDNM-IYVCKI-GENRPIKTFAGHQGEVN---CV-K 332
QF +HS + + FAT ++ + +Y C GE R ++++ + N C
Sbjct: 61 QFNWHSKEG------DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT 114
Query: 333 WDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390
+D S LLA +I N + + H I +++ P +PN +
Sbjct: 115 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP-----RDPN---L 166
Query: 391 LASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
L S S D ++LW+++ L + + GHR+ V S + GE + S +D S+ +W +
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 448 KEGKIV 453
+++
Sbjct: 227 NSKRMM 232
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 323 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 365
GH+ EV +D G + SC D + K+W + + ++ ++E
Sbjct: 195 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 237
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 279 QFEFHSGPTLDVDWRNNVSFATSSTDNM-IYVCKI-GENRPIKTFAGHQGEVN---CV-K 332
QF +HS + + FAT ++ + +Y C GE R ++++ + N C
Sbjct: 20 QFNWHSKEG------DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT 73
Query: 333 WDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390
+D S LLA +I N + + H I +++ P +PN +
Sbjct: 74 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP-----RDPN---L 125
Query: 391 LASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
L S S D ++LW+++ L + + GHR+ V S + GE + S +D S+ +W +
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 448 KEGKIV 453
+++
Sbjct: 186 NSKRMM 191
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 354
+ S D+ + + I + + F G H+ EV +D G + SC D + K+W +
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 355 KQDKYVHDLRE 365
+ ++ ++E
Sbjct: 186 NSKRMMNAIKE 196
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 279 QFEFHSGPTLDVDWRNNVSFATSSTDNM-IYVCKI-GENRPIKTFAGHQGEVN---CV-K 332
QF +HS + + FAT ++ + +Y C GE R ++++ + N C
Sbjct: 24 QFNWHSKEG------DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT 77
Query: 333 WDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390
+D S LLA +I N + + H I +++ P +PN +
Sbjct: 78 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP-----RDPN---L 129
Query: 391 LASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
L S S D ++LW+++ L + + GHR+ V S + GE + S +D S+ +W +
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 448 KEGKIV 453
+++
Sbjct: 190 NSKRMM 195
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 354
+ S D+ + + I + + F G H+ EV +D G + SC D + K+W +
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 355 KQDKYVHDLRE 365
+ ++ ++E
Sbjct: 190 NSKRMMNAIKE 200
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 279 QFEFHSGPTLDVDWRNNVSFATSSTDNM-IYVCKI-GENRPIKTFAGHQGEVN---CV-K 332
QF +HS + + FAT ++ + +Y C GE R ++++ + N C
Sbjct: 25 QFNWHSKEG------DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT 78
Query: 333 WDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390
+D S LLA +I N + + H I +++ P +PN +
Sbjct: 79 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP-----RDPN---L 130
Query: 391 LASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
L S S D ++LW+++ L + + GHR+ V S + GE + S +D S+ +W +
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 448 KEGKIV 453
+++
Sbjct: 191 NSKRMM 196
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 298 FATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 354
+ S D+ + + I + + F G H+ EV +D G + SC D + K+W +
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 355 KQDKYVHDLRE 365
+ ++ ++E
Sbjct: 191 NSKRMMNAIKE 201
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 279 QFEFHSGPTLDVDWRNNVSFATSSTDNM-IYVCKI-GENRPIKTFAGHQGEVN---CV-K 332
QF +HS + + FAT ++ + +Y C GE R ++++ + N C
Sbjct: 24 QFNWHSKEG------DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWT 77
Query: 333 WDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 390
+D S LLA +I N + + H I +++ P +PN +
Sbjct: 78 YDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHP-----RDPN---L 129
Query: 391 LASASFDSTVKLWDVE---LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSL 447
L S S D ++LW+++ L + + GHR+ V S + GE + S +D S+ +W +
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 448 KEGKIV 453
+++
Sbjct: 190 NSKRMM 195
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 302 STDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 358
S D+ + + I + + F G H+ EV +D G + SC D + K+W + +
Sbjct: 134 SKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKR 193
Query: 359 YVHDLRE 365
++ ++E
Sbjct: 194 MMNAIKE 200
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 302 STDNMIYVCKIGENRPIKTFAGHQGE---------------VNCVKWDPTGSLLASCSDD 346
S D+ +V +G +R I F G GE + + W + A+ D
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF-ATVGAD 273
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T ++W++ K V +++ + +G N ++I S S D T+ +++
Sbjct: 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----NGRII--SLSLDGTLNFYELG 327
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWS 446
++L +++GH + + +L +P L SGS D + WS
Sbjct: 328 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWS 363
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 20/221 (9%)
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEE--------WKQQFEFHSGPTLDVDWR---NNVSFAT 300
K YL +G IVW ++ K +F+ +GP D+ W +
Sbjct: 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135
Query: 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKY 359
DN + +GH +N + + + + DD + + K+
Sbjct: 136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 195
Query: 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 419
R H K+ +R +P+ + + D + +D + G+ L + +E
Sbjct: 196 SASDRTHHKQGSFVR-----DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250
Query: 420 PVYSLAFSPT---GEYLASGSLDKSMHIWSLKEGKIVKTYT 457
PV F+ + + A+ D ++ +W + K V+ +T
Sbjct: 251 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 291
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 55/308 (17%)
Query: 182 NGPLNVLVLKH--VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS 239
+G LN L H V + +K +T L N L +GSYDG+ WS++
Sbjct: 318 DGTLNFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS----SMHQ 369
Query: 240 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-------------------- 279
H I SL +K +Y + S D T V + E+ Q
Sbjct: 370 DHSNLIVSLDNSKAQEYS-SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDD 428
Query: 280 ---FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNC------ 330
+ +G + N+ A S + N + V + E I+ F EV+
Sbjct: 429 LLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLEEGNTIQVFKLSDLEVSFDLKTPL 487
Query: 331 ------VKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLR--EHSKEIYTIRWSPTGSG 381
+ P+ + +A+ DV KI Q + V R + +I I W P G
Sbjct: 488 RAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 545
Query: 382 TNNPN-QQLILASASFDSTVKLWDVELG-KLLYSLNGHREPVYSLAFSPTGEYLASGSLD 439
N ++ ++A+ S D+ + ++ V+ K++ +LN H++ V +L + ++SG+ D
Sbjct: 546 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGA-D 604
Query: 440 KSMHIWSL 447
+ W++
Sbjct: 605 ACIKRWNV 612
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 26/159 (16%)
Query: 302 STDNMIYVCKIGENRPIKTFAGHQGE---------------VNCVKWDPTGSLLASCSDD 346
S D+ +V +G +R I F G GE + + W + A+ D
Sbjct: 215 SPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF-ATVGAD 273
Query: 347 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVE 406
T ++W++ K V +++ + +G N ++I S S D T+ +++
Sbjct: 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----NGRII--SLSLDGTLNFYELG 327
Query: 407 LGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
++L +++GH + + +L +P L SGS D + W
Sbjct: 328 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 366 HSKEIYTIRWSPTGSGTNNPN-QQLILASASFDSTVKLWDVEL-GKLLYSLNGHREPVYS 423
+ +I I W P G N ++ ++A+ S D+ + ++ V+ K++ +LN H++ V +
Sbjct: 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNN 589
Query: 424 LAFSPTGEYLASGSLDKSMHIWSL 447
L + ++SG+ D + W++
Sbjct: 590 LLWETPSTLVSSGA-DACIKRWNV 612
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 20/221 (9%)
Query: 252 KKGDYLLTGSCDKTAIVWDVKTEE--------WKQQFEFHSGPTLDVDWR---NNVSFAT 300
K YL +G IVW ++ K +F+ +GP D+ W +
Sbjct: 76 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135
Query: 301 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKY 359
DN + +GH +N + + + DD + + K+
Sbjct: 136 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKF 195
Query: 360 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHRE 419
R H K+ +R +P+ + + D + +D + G+ L + +E
Sbjct: 196 SASDRTHHKQGSFVR-----DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250
Query: 420 PVYSLAFSPT---GEYLASGSLDKSMHIWSLKEGKIVKTYT 457
PV F+ + + A+ D ++ +W + K V+ +T
Sbjct: 251 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 291
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 384 NPNQQLILASASFDSTVKLWDVELGKLLYS-LNGHREPVYSLAFSPTG-EYLASGSLDKS 441
+PNQQ ++A+ D + +WDV G + S L H ++ + F P+ E+L + S D S
Sbjct: 245 HPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGS 304
Query: 442 MHIW 445
+ W
Sbjct: 305 LWHW 308
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 215 LLATGSYDGQARIWST-NGDLKCTLSK-HKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDV 271
++ATG DG IW G + +L K H+ ++ + ++ ++L T S D + WD
Sbjct: 251 VVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDA 310
Query: 272 KTEEWKQQFEFHSG 285
T+ ++ FH G
Sbjct: 311 STDVPEKSSLFHQG 324
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 324 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 383
H V+ V +G+ S S D+ K+W++ Q + R H+ ++ +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV--------AA 177
Query: 384 NPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVY---SLAFSP 428
+P++ + S S D+ + LWD K + G P Y SLA+ P
Sbjct: 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHP 224
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 361 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILA--SASFDSTVKLWDVELGKLLYSLN--- 415
H + +S I ++++SP GS L +A S SF + L++ E G+ + SL+
Sbjct: 227 HSMINNSNSIRSVKFSPQGS-------LLAIAHDSNSF-GCITLYETEFGERIGSLSVPT 278
Query: 416 ----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 455
H V SL+F+ +GE L S D + W +K + + T
Sbjct: 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 328
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 19/139 (13%)
Query: 299 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVN------CVKWDPTGSLLASCSDDVTAKIW 352
AT + + + ++ RP+ F +N VK+ P GSLLA D +
Sbjct: 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 260
Query: 353 NMKQDKY----------VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKL 402
+ + ++ H + E W + S ++ L SA +D ++
Sbjct: 261 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET---LCSAGWDGKLRF 317
Query: 403 WDVELGKLLYSLNGHREPV 421
WDV+ + + +LN H + +
Sbjct: 318 WDVKTKERITTLNMHCDDI 336
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 361 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILA--SASFDSTVKLWDVELGKLLYSLN--- 415
H + +S I ++++SP GS L +A S SF + L++ E G+ + SL+
Sbjct: 237 HSMINNSNSIRSVKFSPQGS-------LLAIAHDSNSF-GCITLYETEFGERIGSLSVPT 288
Query: 416 ----------GHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKT 455
H V SL+F+ +GE L S D + W +K + + T
Sbjct: 289 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 338
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 19/144 (13%)
Query: 290 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN------CVKWDPTGSLLASC 343
VD AT + + + ++ RP+ F +N VK+ P GSLLA
Sbjct: 202 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 261
Query: 344 SDDVTAKIWNMKQDKY----------VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAS 393
D + + + ++ H + E W + S ++ L S
Sbjct: 262 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET---LCS 318
Query: 394 ASFDSTVKLWDVELGKLLYSLNGH 417
A +D ++ WDV+ + + +LN H
Sbjct: 319 AGWDGKLRFWDVKTKERITTLNMH 342
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 62/213 (29%)
Query: 241 HKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299
HK + ++N + D+L+ T S D T +WD++ +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK------------------------ 237
Query: 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD------VTAKIWN 353
D Y+ ++ +P VN ++PT S +D ++ W+
Sbjct: 238 ----DKNSYIAEMPHEKP----------VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 283
Query: 354 MKQDKYVHDLREHSKEIYTIR--WSPTGS---GTNNPNQQLILASASFDSTVKLWDVELG 408
+H R+ + + I+ W P P+ QL+L T+ ++D G
Sbjct: 284 KPDQIIIHPHRQF-QHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKR---TIDIYDANSG 339
Query: 409 KLLYSLNGHREP----VYSL-AFSPTGEYLASG 436
L++ L R+P + SL FSPTG+ LASG
Sbjct: 340 GLVHQL---RDPNAAGIISLNKFSPTGDVLASG 369
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 62/213 (29%)
Query: 241 HKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 299
HK + ++N + D+L+ T S D T +WD++ +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK------------------------ 238
Query: 300 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD------VTAKIWN 353
D Y+ ++ +P VN ++PT S +D ++ W+
Sbjct: 239 ----DKNSYIAEMPHEKP----------VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284
Query: 354 MKQDKYVHDLREHSKEIYTIR--WSPTGS---GTNNPNQQLILASASFDSTVKLWDVELG 408
+H R+ + + I+ W P P+ QL+L T+ ++D G
Sbjct: 285 KPDQIIIHPHRQF-QHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKR---TIDIYDANSG 340
Query: 409 KLLYSLNGHREP----VYSL-AFSPTGEYLASG 436
L++ L R+P + SL FSPTG+ LASG
Sbjct: 341 GLVHQL---RDPNAAGIISLNKFSPTGDVLASG 370
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 51/174 (29%)
Query: 127 SFEIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGA------ 180
+FE P I +G V C W P +A+ T+ + G
Sbjct: 3 AFEKPQIIAHIQKGFNYTVFDCKWVP-----------CSAKFVTMGNFARGTGVIQLYEI 51
Query: 181 QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG---EGTLLATGSYDGQARIWSTNGDLKCT 237
Q+G L +L R EK+K + + + LATG + G IW+
Sbjct: 52 QHGDLKLL-------REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN-------- 96
Query: 238 LSKHKGPIFSLKWNKK----------------GDYLLTGSCDKTAIVWDVKTEE 275
L + P++S+K +K+ ++TGS D T VWD + ++
Sbjct: 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150
>pdb|4GOY|A Chain A, The Crystal Structure Of Human Fascin 1 K41a Mutant
pdb|4GOY|B Chain B, The Crystal Structure Of Human Fascin 1 K41a Mutant
Length = 493
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 293
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 294 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S +
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRS---SYD 412
Query: 351 IWNMKQDKYVHDLREHSKEIYTI 373
++ ++ + +++++ + + +T+
Sbjct: 413 VFQLEFNDGAYNIKDSTGKYWTV 435
>pdb|4GOV|A Chain A, The Crystal Structure Of Human Fascin 1 S39d Mutant
pdb|4GOV|B Chain B, The Crystal Structure Of Human Fascin 1 S39d Mutant
Length = 493
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 293
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 294 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S +
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRS---SYD 412
Query: 351 IWNMKQDKYVHDLREHSKEIYTI 373
++ ++ + +++++ + + +T+
Sbjct: 413 VFQLEFNDGAYNIKDSTGKYWTV 435
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|3LLP|A Chain A, 1.8 Angstrom Human Fascin 1 Crystal Structure
pdb|3LLP|B Chain B, 1.8 Angstrom Human Fascin 1 Crystal Structure
Length = 493
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 293
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 294 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S +
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRS---SYD 412
Query: 351 IWNMKQDKYVHDLREHSKEIYTI 373
++ ++ + +++++ + + +T+
Sbjct: 413 VFQLEFNDGAYNIKDSTGKYWTV 435
>pdb|3P53|A Chain A, Structure Of Fascin
pdb|3P53|B Chain B, Structure Of Fascin
Length = 496
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 293
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 307 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 361
Query: 294 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD----- 345
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S
Sbjct: 362 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRSSYDVFQ 418
Query: 346 -----------DVTAKIWNMKQDKYV 360
D T K W + D V
Sbjct: 419 LEFNDGAYNIKDSTGKYWTVGSDSAV 444
>pdb|4GP0|A Chain A, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
pdb|4GP0|B Chain B, The Crystal Structure Of Human Fascin 1 R149a K150a R151a
Mutant
Length = 493
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 15/143 (10%)
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 293
KC H G ++L G T S + +D+ EW+ ++ + V +
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSK 358
Query: 294 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S +
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRS---SYD 412
Query: 351 IWNMKQDKYVHDLREHSKEIYTI 373
++ ++ + +++++ + + +T+
Sbjct: 413 VFQLEFNDGAYNIKDSTGKYWTV 435
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 394 ASFDSTVKLWDV-ELGKLL---YSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIWSLKE 449
AS V+LW++ E LL ++ H + V +L+ G SG D S+ +W L +
Sbjct: 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ 170
Query: 450 GKIVKTYTGNGGIFEVCWNKEGDKIAACFANHTV 483
++K+Y + + E + +AAC T+
Sbjct: 171 KAVLKSYNAH--------SSEVNCVAACPGKDTI 196
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 20/182 (10%)
Query: 307 IYVCKIGENRPIKTF--AGHQGE--VNCVKWDPTGSLLASCSDDVTAKIWNM--KQDKYV 360
I+V K E P ++ AG Q E V V W +L + SD ++W + K+ V
Sbjct: 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVA-SDSGAVELWEILEKESLLV 130
Query: 361 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREP 420
+ ++ + S GT S D +VK+WD+ +L S N H
Sbjct: 131 NKFAKYEHDDIVKTLSVFSDGTQ-------AVSGGKDFSVKVWDLSQKAVLKSYNAHSSE 183
Query: 421 VYSLAFSPTGE--YLASGSLDKSMHIWSLKEGKIVKT--YTGNGGI-FEVCWNKEGDKIA 475
V +A P + +L+ G D + +W ++ K + + I V W+ E D
Sbjct: 184 VNCVAACPGKDTIFLSCGE-DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF 242
Query: 476 AC 477
AC
Sbjct: 243 AC 244
>pdb|2PM6|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
Length = 399
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 405 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
++LG L NGHR+ +L YLA+GSLDK IW
Sbjct: 252 IKLGDRLKE-NGHRQDSLTL-------YLAAGSLDKVASIW 284
>pdb|3O72|A Chain A, Crystal Structure Of Efeb In Complex With Heme
pdb|3O72|B Chain B, Crystal Structure Of Efeb In Complex With Heme
pdb|3O72|C Chain C, Crystal Structure Of Efeb In Complex With Heme
pdb|3O72|D Chain D, Crystal Structure Of Efeb In Complex With Heme
Length = 396
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 341 ASCSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTG 379
A C DV +I QD +H LR+ H+ ++ ++RW G
Sbjct: 136 ALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREG 177
>pdb|2PM7|A Chain A, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|C Chain C, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 399
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 7/31 (22%)
Query: 415 NGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
NGHR+ +L YLA+GSLDK IW
Sbjct: 261 NGHRQDSLTL-------YLAAGSLDKVASIW 284
>pdb|2Y4F|A Chain A, X-Ray Crystallographic Structure Of E. Coli Heme-Efeb
pdb|2Y4F|B Chain B, X-Ray Crystallographic Structure Of E. Coli Heme-Efeb
Length = 392
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 341 ASCSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTG 379
A C DV +I QD +H LR+ H+ ++ ++RW G
Sbjct: 140 ALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREG 181
>pdb|2Y4D|A Chain A, X-Ray Crystallographic Structure Of E. Coli Apo-Efeb
pdb|2Y4D|B Chain B, X-Ray Crystallographic Structure Of E. Coli Apo-Efeb
pdb|2Y4E|A Chain A, X-Ray Crystallographic Structure Of E. Coli Ppix-Efeb
pdb|2Y4E|B Chain B, X-Ray Crystallographic Structure Of E. Coli Ppix-Efeb
Length = 403
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 341 ASCSDDVTAKIWNMKQDKYVHDLRE---HSKEIYTIRWSPTG 379
A C DV +I QD +H LR+ H+ ++ ++RW G
Sbjct: 151 ALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREG 192
>pdb|3MZL|B Chain B, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|D Chain D, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|F Chain F, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|H Chain H, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 345
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 405 VELGKLLYSLNGHREPVYSLAFSPTGEYLASGSLDKSMHIW 445
++LG L NGHR+ +L YLA+GSLDK IW
Sbjct: 215 IKLGDRLKE-NGHRQDSLTL-------YLAAGSLDKVASIW 247
>pdb|4GP3|A Chain A, The Crystal Structure Of Human Fascin 1 K358a Mutant
pdb|4GP3|B Chain B, The Crystal Structure Of Human Fascin 1 K358a Mutant
Length = 493
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 235 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEFHSGPTLDVDWR 293
KC H G ++L G T S + +D+ EW+ ++ + V
Sbjct: 304 KCAFRTHTGKYWTL--TATGGVQSTASSKNASCYFDI---EWRDRRITLRASNGKFVTSA 358
Query: 294 NNVSFATS---STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 350
N A S + D+ +++ K+ NRPI F G G + C K TG+L A+ S +
Sbjct: 359 KNGQLAASVETAGDSELFLMKL-INRPIIVFRGEHGFIGCRK--VTGTLDANRS---SYD 412
Query: 351 IWNMKQDKYVHDLREHSKEIYTI 373
++ ++ + +++++ + + +T+
Sbjct: 413 VFQLEFNDGAYNIKDSTGKYWTV 435
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 66/328 (20%), Positives = 124/328 (37%), Gaps = 70/328 (21%)
Query: 204 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC------------TLSKHKG-------- 243
++T+++N G LLATG G+ I+ + K T H+
Sbjct: 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90
Query: 244 ----PIFSLKW--NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 297
I ++W K L + DKT +W K E ++ E ++ D +R+ +
Sbjct: 91 EIEEKINKIRWLPQKNAAQFLLSTNDKTIKLW--KISERDKRPEGYNLKEEDGRYRDPTT 148
Query: 298 FATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK- 355
T + + E P + FA H +N + + S +DD+ +W+++
Sbjct: 149 VTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS-ADDLRINLWHLEI 207
Query: 356 --QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKL--- 410
+ + D++ + E T + +PN +S T++L D+ L
Sbjct: 208 TDRSFNIVDIKPANMEELT---EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264
Query: 411 ---LY-------SLNGHREPVYSLA---FSPTGEYLASGSLDKSMHIWSLK-EGKIVKTY 456
L+ + + E + S++ FS +G Y+ + S+ +W L E + V+TY
Sbjct: 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY 323
Query: 457 TGNGGI----------------FEVCWN 468
+ + FE CWN
Sbjct: 324 QVHEYLRSKLCSLYENDCIFDKFECCWN 351
>pdb|2WHK|A Chain A, Structure Of Bacillus Subtilis Mannanase Man26
Length = 336
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 412 YSLNGHREPVY---SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 468
YS+NG+ + AF+ G A+GS D S+ I ++K+ K KT I+ + WN
Sbjct: 247 YSINGYDQLTALNKPFAFTEVGPQTANGSFDYSLFINAIKQ-KYPKT------IYFLAWN 299
Query: 469 KE 470
E
Sbjct: 300 DE 301
>pdb|3CBW|A Chain A, Crystal Structure Of The Ydht Protein From Bacillus
Subtilis
pdb|3CBW|B Chain B, Crystal Structure Of The Ydht Protein From Bacillus
Subtilis
Length = 353
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 412 YSLNGHREPVY---SLAFSPTGEYLASGSLDKSMHIWSLKEGKIVKTYTGNGGIFEVCWN 468
YS+NG+ + AF+ G A+GS D S+ I ++K+ K KT I+ + WN
Sbjct: 256 YSINGYDQLTALNKPFAFTEVGPQTANGSFDYSLFINAIKQ-KYPKT------IYFLAWN 308
Query: 469 KE 470
E
Sbjct: 309 DE 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,650,744
Number of Sequences: 62578
Number of extensions: 675642
Number of successful extensions: 2844
Number of sequences better than 100.0: 129
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 550
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)