Query 011233
Match_columns 490
No_of_seqs 403 out of 4496
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 23:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-46 3.2E-51 417.1 24.7 440 25-474 116-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-45 2.5E-50 410.0 25.4 443 1-455 117-590 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.2E-36 2.5E-41 292.1 7.5 358 28-390 53-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.8E-36 1.3E-40 287.3 7.1 368 22-394 73-455 (873)
5 KOG0444 Cytoskeletal regulator 100.0 3.8E-33 8.3E-38 269.8 -1.9 356 5-390 10-374 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 2.8E-33 6.1E-38 258.0 -4.6 372 4-391 70-541 (565)
7 KOG0472 Leucine-rich repeat pr 100.0 5.1E-34 1.1E-38 262.9 -11.0 425 25-476 66-543 (565)
8 KOG0444 Cytoskeletal regulator 100.0 2.2E-32 4.8E-37 264.6 -2.4 353 1-386 31-394 (1255)
9 PLN03210 Resistant to P. syrin 100.0 6.5E-28 1.4E-32 268.9 25.6 342 1-392 557-907 (1153)
10 KOG0618 Serine/threonine phosp 99.9 3.8E-30 8.2E-35 259.8 -3.4 373 4-389 47-463 (1081)
11 KOG0618 Serine/threonine phosp 99.9 3.6E-29 7.8E-34 252.8 -4.6 150 237-390 242-419 (1081)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-23 2.9E-28 234.4 26.9 304 2-323 589-908 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.2E-24 6.9E-29 198.1 -3.7 267 25-295 65-357 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1E-20 2.2E-25 197.3 17.4 260 47-393 201-460 (788)
15 KOG4237 Extracellular matrix p 99.8 2.6E-22 5.7E-27 185.6 -3.4 308 50-396 49-364 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 1.3E-19 2.9E-24 189.0 15.7 258 27-346 201-459 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 4.6E-19 9.9E-24 186.1 12.5 246 94-391 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3E-23 182.6 14.8 245 27-321 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-19 2.3E-24 176.8 -0.3 211 179-390 75-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 5.6E-19 1.2E-23 171.7 -0.2 260 43-343 19-318 (319)
21 KOG0617 Ras suppressor protein 99.7 1.8E-18 3.9E-23 142.7 -5.1 182 206-394 30-215 (264)
22 KOG0617 Ras suppressor protein 99.6 1.3E-16 2.9E-21 131.7 -2.5 156 233-391 30-186 (264)
23 KOG4658 Apoptotic ATPase [Sign 99.2 9.8E-12 2.1E-16 133.3 7.3 129 21-150 517-652 (889)
24 KOG0532 Leucine-rich repeat (L 99.2 6.2E-13 1.3E-17 129.4 -3.5 177 187-374 77-253 (722)
25 PF14580 LRR_9: Leucine-rich r 99.2 2E-11 4.4E-16 105.4 4.6 127 21-149 13-149 (175)
26 COG4886 Leucine-rich repeat (L 99.2 3.3E-11 7.1E-16 120.7 6.9 196 189-394 97-293 (394)
27 COG4886 Leucine-rich repeat (L 99.2 6.8E-11 1.5E-15 118.4 8.9 84 259-346 208-291 (394)
28 KOG3207 Beta-tubulin folding c 99.2 7.7E-12 1.7E-16 118.3 1.4 207 182-390 118-338 (505)
29 KOG1259 Nischarin, modulator o 99.1 1E-11 2.2E-16 112.0 0.2 132 256-392 280-413 (490)
30 PF14580 LRR_9: Leucine-rich r 99.1 6.7E-11 1.5E-15 102.2 5.3 116 35-153 5-126 (175)
31 KOG4658 Apoptotic ATPase [Sign 99.1 1.7E-10 3.7E-15 123.8 8.0 249 18-274 536-808 (889)
32 KOG3207 Beta-tubulin folding c 99.1 3.6E-11 7.8E-16 113.8 0.7 185 90-297 143-339 (505)
33 KOG1909 Ran GTPase-activating 99.0 1.3E-11 2.8E-16 113.8 -3.1 189 181-390 88-310 (382)
34 PLN03150 hypothetical protein; 99.0 8.4E-10 1.8E-14 116.0 9.6 108 48-155 419-530 (623)
35 KOG1909 Ran GTPase-activating 99.0 5.1E-11 1.1E-15 109.9 -0.8 153 113-274 88-255 (382)
36 KOG1259 Nischarin, modulator o 99.0 2.8E-10 6.2E-15 102.8 2.9 134 233-372 281-416 (490)
37 PLN03150 hypothetical protein; 98.9 1.2E-09 2.7E-14 114.7 6.9 108 286-393 420-530 (623)
38 KOG0532 Leucine-rich repeat (L 98.9 7.3E-11 1.6E-15 115.2 -3.4 166 172-348 85-250 (722)
39 PF13855 LRR_8: Leucine rich r 98.8 1.6E-09 3.5E-14 76.9 2.3 57 333-389 2-60 (61)
40 KOG0531 Protein phosphatase 1, 98.7 1.3E-09 2.7E-14 109.6 -0.6 264 26-323 48-320 (414)
41 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 72.6 3.4 60 308-367 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.7 4E-09 8.7E-14 106.0 1.0 242 26-278 71-323 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1E-09 2.3E-14 99.1 -5.3 103 48-150 186-296 (419)
44 KOG4341 F-box protein containi 98.5 4.1E-09 9E-14 99.6 -3.8 82 71-152 139-228 (483)
45 KOG2120 SCF ubiquitin ligase, 98.5 2.6E-09 5.6E-14 96.6 -6.4 158 181-341 206-372 (419)
46 KOG1859 Leucine-rich repeat pr 98.4 3.1E-09 6.8E-14 106.7 -9.0 192 2-222 84-291 (1096)
47 KOG4341 F-box protein containi 98.4 7.3E-09 1.6E-13 97.9 -6.3 232 47-298 138-386 (483)
48 KOG1859 Leucine-rich repeat pr 98.3 3.2E-08 6.9E-13 99.7 -2.9 178 202-390 102-291 (1096)
49 KOG2982 Uncharacterized conser 98.2 3.4E-07 7.3E-12 83.2 1.3 184 207-391 69-262 (418)
50 KOG2982 Uncharacterized conser 98.2 7.6E-07 1.6E-11 80.9 3.5 220 28-268 46-287 (418)
51 PF12799 LRR_4: Leucine Rich r 98.2 8.7E-07 1.9E-11 57.7 2.1 37 333-369 2-38 (44)
52 KOG4579 Leucine-rich repeat (L 98.1 2E-07 4.3E-12 75.0 -2.4 105 285-390 28-135 (177)
53 PRK15386 type III secretion pr 98.0 7.9E-06 1.7E-10 79.5 5.8 135 232-388 48-187 (426)
54 KOG3665 ZYG-1-like serine/thre 98.0 1.2E-06 2.6E-11 92.3 0.1 77 25-102 146-229 (699)
55 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 53.3 3.8 37 47-83 1-37 (44)
56 PRK15386 type III secretion pr 98.0 2.6E-05 5.7E-10 76.0 8.8 136 182-343 49-188 (426)
57 KOG4579 Leucine-rich repeat (L 97.9 5.3E-07 1.2E-11 72.6 -3.0 126 262-390 29-158 (177)
58 COG5238 RNA1 Ran GTPase-activa 97.9 3E-06 6.4E-11 76.2 1.2 175 64-248 24-226 (388)
59 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 4E-10 68.2 5.3 101 47-149 42-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.9 5.2E-06 1.1E-10 87.5 1.8 128 27-155 122-265 (699)
61 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-05 2.5E-10 72.5 2.8 137 235-371 156-319 (388)
62 KOG1644 U2-associated snRNP A' 97.8 7.2E-05 1.6E-09 64.6 6.5 128 49-195 21-150 (233)
63 KOG2123 Uncharacterized conser 97.5 4.3E-06 9.2E-11 75.5 -4.3 97 26-123 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00013 2.7E-09 65.8 2.8 105 43-149 39-152 (260)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00016 3.4E-09 65.2 2.4 104 283-388 42-153 (260)
66 KOG2123 Uncharacterized conser 97.3 1.9E-05 4E-10 71.4 -3.5 102 43-146 15-123 (388)
67 KOG1947 Leucine rich repeat pr 97.1 8.7E-05 1.9E-09 76.4 -1.2 35 357-391 403-440 (482)
68 PF13306 LRR_5: Leucine rich r 97.0 0.0013 2.9E-08 54.2 5.5 119 256-380 8-128 (129)
69 PF13306 LRR_5: Leucine rich r 96.8 0.0025 5.5E-08 52.5 5.7 97 256-357 31-128 (129)
70 KOG1947 Leucine rich repeat pr 96.7 0.00037 8E-09 71.7 -0.6 35 334-368 403-440 (482)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.0044 9.6E-08 33.4 1.3 21 48-68 1-21 (22)
72 PF00560 LRR_1: Leucine Rich R 95.8 0.0021 4.6E-08 34.7 -0.1 17 357-373 2-18 (22)
73 PF13504 LRR_7: Leucine rich r 95.3 0.0094 2E-07 29.8 1.0 16 356-371 2-17 (17)
74 PF13504 LRR_7: Leucine rich r 94.4 0.028 6.1E-07 28.1 1.4 16 48-63 2-17 (17)
75 KOG4308 LRR-containing protein 93.8 0.0015 3.2E-08 66.2 -7.5 182 186-368 88-303 (478)
76 KOG4308 LRR-containing protein 93.5 0.00079 1.7E-08 68.2 -10.2 88 259-346 203-304 (478)
77 smart00369 LRR_TYP Leucine-ric 93.4 0.085 1.8E-06 29.6 2.4 21 354-374 1-21 (26)
78 smart00370 LRR Leucine-rich re 93.4 0.085 1.8E-06 29.6 2.4 21 354-374 1-21 (26)
79 KOG0473 Leucine-rich repeat pr 92.6 0.0036 7.8E-08 55.5 -5.9 89 305-394 39-127 (326)
80 KOG0473 Leucine-rich repeat pr 91.1 0.0059 1.3E-07 54.2 -6.4 78 26-104 41-122 (326)
81 KOG3864 Uncharacterized conser 89.4 0.086 1.9E-06 46.1 -0.6 83 259-341 100-185 (221)
82 smart00370 LRR Leucine-rich re 87.9 0.41 8.8E-06 26.7 1.8 18 47-64 2-19 (26)
83 smart00369 LRR_TYP Leucine-ric 87.9 0.41 8.8E-06 26.7 1.8 18 47-64 2-19 (26)
84 smart00364 LRR_BAC Leucine-ric 87.8 0.35 7.6E-06 27.1 1.3 18 355-372 2-19 (26)
85 KOG3864 Uncharacterized conser 87.0 0.16 3.4E-06 44.5 -0.5 79 48-126 102-185 (221)
86 PF13516 LRR_6: Leucine Rich r 81.4 0.74 1.6E-05 25.1 0.8 18 260-277 2-19 (24)
87 smart00365 LRR_SD22 Leucine-ri 79.1 1.6 3.6E-05 24.5 1.7 16 355-370 2-17 (26)
88 KOG3763 mRNA export factor TAP 66.8 3.9 8.4E-05 41.6 2.2 80 43-123 214-307 (585)
89 smart00368 LRR_RI Leucine rich 64.5 5.9 0.00013 22.6 1.8 14 355-368 2-15 (28)
90 smart00367 LRR_CC Leucine-rich 61.4 6.4 0.00014 21.8 1.6 15 209-223 2-16 (26)
91 KOG3763 mRNA export factor TAP 57.4 6.4 0.00014 40.1 1.8 67 207-274 216-284 (585)
92 KOG4242 Predicted myosin-I-bin 54.5 82 0.0018 31.8 8.7 21 118-138 215-235 (553)
93 TIGR00864 PCC polycystin catio 34.0 26 0.00057 43.1 2.2 31 361-391 1-32 (2740)
94 TIGR00864 PCC polycystin catio 20.7 64 0.0014 40.0 2.3 32 53-84 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-46 Score=417.06 Aligned_cols=440 Identities=20% Similarity=0.246 Sum_probs=207.6
Q ss_pred CCCccceeeecccccccc--ccCCCCccEEEcCCCCccc-ccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEec
Q 011233 25 PLTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQ-LWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDL 100 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L 100 (490)
.+++|++|++++|.+.+. ...+++|++|++++|.+.+ +|..++++++|++|++++|.+.+.+| .++++++|++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 344455555554444433 2334445555555554442 34445555555555555555444444 4455555555555
Q ss_pred CCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhh---ccC-C
Q 011233 101 GSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIK---VGI-K 175 (490)
Q Consensus 101 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~---~~~-~ 175 (490)
++|.+.+.+|..++++++|++|++++|.+.+.+|..+. +++|++|++++|.+.+..|..+..+. .|+.++ +.+ +
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeec
Confidence 55555555555555555555555555554444554444 55555555555554444444443333 333222 222 2
Q ss_pred cCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcc
Q 011233 176 ELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDE 255 (490)
Q Consensus 176 ~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~ 255 (490)
.+|.++..+++|++|++++|.+.+.+|..+.++++|++|++++ |.+. +.+|..+..+++|+.|++++|.+.+.+|..
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~-n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS-NNFT--GKIPVALTSLPRLQVLQLWSNKFSGEIPKN 351 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC-CccC--CcCChhHhcCCCCCEEECcCCCCcCcCChH
Confidence 3344444455555555555554444444445555555555554 3443 344444445555555555555554445544
Q ss_pred ccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccc
Q 011233 256 LGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLV 335 (490)
Q Consensus 256 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 335 (490)
++.+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..++.|+
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 45555555555555555444444444444455555554444444444444445555555555554444444444555555
Q ss_pred eeeccCccccc-CCccccCCCCCCEEeCcCCCCCC-CchhhhccCCCCEEecCCCCCcccc----------ccccccccC
Q 011233 336 VLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLER-TPASLYQLSSIKYLKLFDNNFKHRL----------LTLSVDLNL 403 (490)
Q Consensus 336 ~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~ls~n~~~~~l----------~~l~~~~n~ 403 (490)
.|++++|.+++ +|..+..+++|+.|++++|++.+ +|.. ...++|+.|++++|++.+.+ ..++++.|
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N- 509 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN- 509 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCC-
Confidence 55555555444 33344444444444444444442 2321 22344444555444443222 12233332
Q ss_pred Ccccchhhhhhhhccc--------cceeeecCeeeeccchhhhcccccceeeeEeccccccccccccceeeeecccccc
Q 011233 404 VPNVLSEIINDRWRKL--------SFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGNS 474 (490)
Q Consensus 404 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~~ 474 (490)
.+.+.++..+... +.+...+..+.....++.++.||+++|+++|.+|..+.. ...+++++++.+...
T Consensus 510 ---~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 510 ---KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN-VESLVQVNISHNHLH 584 (968)
T ss_pred ---cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc-CcccCEEeccCCcce
Confidence 2222222222111 001111111122233556677777777777777776533 456777777755443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-45 Score=410.00 Aligned_cols=443 Identities=21% Similarity=0.239 Sum_probs=337.8
Q ss_pred CCcceEEEecCCcCccccccCCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCccc-ccccccCCCCCCEE
Q 011233 1 MTELRTLKFYGSENKCMVSSLEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQ-LWNDVRNLVNLKYI 75 (490)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 75 (490)
+++||+|+++++.. ....|. -.+++|++|++++|.+.+. +..+++|++|++++|.+.+ +|..+.++++|++|
T Consensus 117 l~~L~~L~Ls~n~l--~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 117 SSSLRYLNLSNNNF--TGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCCEEECcCCcc--ccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 35667777766321 112222 2567899999999998754 6788999999999999874 78888999999999
Q ss_pred ecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCC
Q 011233 76 DLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKL 153 (490)
Q Consensus 76 ~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~ 153 (490)
++++|.+.+.+| .++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+. +++|++|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 999999888888 888999999999999999889999999999999999999988888888887 899999999999888
Q ss_pred CCCcccccchhhhhhhhh---ccC-CcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCC
Q 011233 154 KNHPAISSSLIPLLSLIK---VGI-KELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLP 229 (490)
Q Consensus 154 ~~~~~~~~~~~~~L~~~~---~~~-~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~ 229 (490)
+..|..+..+. .|+.++ +.+ +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++ |.+. +.+|
T Consensus 274 ~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~--~~~p 349 (968)
T PLN00113 274 GPIPPSIFSLQ-KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS-NKFS--GEIP 349 (968)
T ss_pred ccCchhHhhcc-CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC-CCCc--CcCC
Confidence 88887766554 555444 443 35677788889999999999988888888888899999999988 6665 6788
Q ss_pred cccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccc
Q 011233 230 NNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKY 309 (490)
Q Consensus 230 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 309 (490)
..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 88888888999999888888888888888888888888888888878888888888888888888888888887888888
Q ss_pred cceeecccccccccCCcccCCccccceeeccCccccc-CCccccCCCCCCEEeCcCCCCC-CCchhhhccCCCCEEecCC
Q 011233 310 LTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLE-RTPASLYQLSSIKYLKLFD 387 (490)
Q Consensus 310 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~ls~ 387 (490)
|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+ +|..+ ..++|+.|++++|+++ .+|..+..+++|++|++++
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 8888888888887777777777788888888887776 55443 3567777777777777 4466777777777777777
Q ss_pred CCCcccc----------ccccccccCCcccchhhhhhhhcccc--------ceeeecCeeeeccchhhhcccccceeeeE
Q 011233 388 NNFKHRL----------LTLSVDLNLVPNVLSEIINDRWRKLS--------FHVKVGSRVCISLGMKFQSGLGIKHFQFQ 449 (490)
Q Consensus 388 n~~~~~l----------~~l~~~~n~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ls~n~~~ 449 (490)
|++.+.+ ..++++.| .+.+.++..+.... .+...+..+........++.+++++|+++
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N----~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHN----QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCC----cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 7765433 33444444 33333333332211 11111122222233567889999999999
Q ss_pred eccccc
Q 011233 450 TALGRK 455 (490)
Q Consensus 450 ~~~p~~ 455 (490)
|.+|+.
T Consensus 585 ~~~p~~ 590 (968)
T PLN00113 585 GSLPST 590 (968)
T ss_pred eeCCCc
Confidence 999974
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-36 Score=292.11 Aligned_cols=358 Identities=21% Similarity=0.217 Sum_probs=222.4
Q ss_pred ccceeeecccccccc------ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCCCcc-cCCCCcEEe
Q 011233 28 EVRYFEWHQFPLETL------NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLPDLS-LARNLEILD 99 (490)
Q Consensus 28 ~L~~L~l~~~~l~~l------~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~l~~L~~L~ 99 (490)
.-+-|+.+...+..+ -.-+..-+.|++++|.+..+- ..|.++++|+.+++.+|. .+.+|.++ ...+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEe
Confidence 344555555555554 112344556666666666653 556666667766666665 44555443 334466677
Q ss_pred cCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc--cCCccEEeecCCCCCCCCcccccchh--hhhhhhhccCC
Q 011233 100 LGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH--SKYIEELDFVGCSKLKNHPAISSSLI--PLLSLIKVGIK 175 (490)
Q Consensus 100 L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--l~~L~~L~ls~n~~~~~~~~~~~~~~--~~L~~~~~~~~ 175 (490)
|.+|.+...-.++++.++.|++||||.|. +..+|..-+ -.++++|+|++|.++..-...+..+. ..|++..|.++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 76666666656666666666777776664 444444333 45666677766666554444444333 02333336666
Q ss_pred cCC-ccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCc
Q 011233 176 ELP-SSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPD 254 (490)
Q Consensus 176 ~lp-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~ 254 (490)
.+| ..|.++++|+.|+|..|++.-.-...|.++++|+.|.+.. |.+. ..-..+|..+.++++|+++.|++...-..
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr-N~I~--kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-NDIS--KLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh-cCcc--cccCcceeeecccceeecccchhhhhhcc
Confidence 676 4555677777777777665444344566777777777777 6664 22233566677777777777766666666
Q ss_pred cccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCcccc
Q 011233 255 ELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCL 334 (490)
Q Consensus 255 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 334 (490)
++.++++|+.|++|+|.|....++.+..+++|++|+++.|++..--+..|..+..|+.|.|++|.+...-..+|.++++|
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 66667777777777777776666666677777777777766666556666666777777777776655555566667777
Q ss_pred ceeeccCccccc-C---CccccCCCCCCEEeCcCCCCCCCc-hhhhccCCCCEEecCCCCC
Q 011233 335 VVLIVKGTAIRE-V---PESLGQLSSIVRLDLSNNNLERTP-ASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 335 ~~L~L~~n~l~~-~---p~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~ls~n~~ 390 (490)
+.|||++|.+.. + ...|.++++|+.|++.+|+++.|| .+|.+++.||.|||.+|.+
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 777777776665 2 234566777777777777777664 4566677777777777764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-36 Score=287.35 Aligned_cols=368 Identities=16% Similarity=0.154 Sum_probs=316.8
Q ss_pred CCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCc
Q 011233 22 EGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLE 96 (490)
Q Consensus 22 ~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~ 96 (490)
.++.++..+.||+++|.+..+ +.++++|+++++.+|.++.||...+...+|+.|+|.+|.+.+.-. .+..++.|+
T Consensus 73 ~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 73 KGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred CCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 455677889999999999988 789999999999999999999888888899999999998655433 788999999
Q ss_pred EEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhh---c
Q 011233 97 ILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIK---V 172 (490)
Q Consensus 97 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~---~ 172 (490)
.||||.|.+...--.+|..-.++++|+|++|.+...-...|. +.+|..|.|+.|.++...+..+..+. .|+.++ |
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcc-hhhhhhcccc
Confidence 999999887766667788888999999999985544444444 88999999999988776666665555 666666 5
Q ss_pred cCCcCC-ccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCc
Q 011233 173 GIKELP-SSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLER 251 (490)
Q Consensus 173 ~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~ 251 (490)
.+..+. ..|.++++|+.|.+..|.+...-...|..+.++++|+|+. |+++ ..-..++.++++|+.|++++|.+...
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~--~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQ--AVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhh--hhhcccccccchhhhhccchhhhhee
Confidence 555552 5688999999999999999887778899999999999999 9986 33445788999999999999999999
Q ss_pred cCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCc---cc
Q 011233 252 LPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPN---EL 328 (490)
Q Consensus 252 ~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~~ 328 (490)
-+++++.+++|++|++++|+++..-+..|..+..|++|.+++|.+...-...|..+++|++|||++|.+...+.+ .|
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 899999999999999999999997788999999999999999988777667788999999999999998876654 57
Q ss_pred CCccccceeeccCcccccCC-ccccCCCCCCEEeCcCCCCCCC-chhhhccCCCCEEecCCCCCcccc
Q 011233 329 GNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLERT-PASLYQLSSIKYLKLFDNNFKHRL 394 (490)
Q Consensus 329 ~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n~~~~~l 394 (490)
.++++|+.|++.+|++..|| .+|.++++|+.|||.+|.+.+| |.+|..+ .|+.|.+..-.++...
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 88999999999999999998 7899999999999999999988 7888888 9999998877665443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.8e-33 Score=269.85 Aligned_cols=356 Identities=22% Similarity=0.317 Sum_probs=270.4
Q ss_pred eEEEecCCcCccccccCCCC-CCCccceeeecccccccc---ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCC
Q 011233 5 RTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL---NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHS 80 (490)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n 80 (490)
|-.+++++.. ....+|.++ .+++++.|.|....+..+ ...+.+|++|.+++|++..+-..+..++.|+.+++.+|
T Consensus 10 rGvDfsgNDF-sg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 10 RGVDFSGNDF-SGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred ecccccCCcC-CCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 4456666331 225667777 788888888888888777 77788888888888888888777888888888888888
Q ss_pred CCC--CCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc--cCCccEEeecCCCCCCCC
Q 011233 81 ESL--TKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH--SKYIEELDFVGCSKLKNH 156 (490)
Q Consensus 81 ~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--l~~L~~L~ls~n~~~~~~ 156 (490)
++. |.++++..+..|+.||||+|++ ...|..+.+-.++-+|+||+|+ +..+|..++ ++.|-.||+|+|.
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr----- 161 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR----- 161 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhh-hhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-----
Confidence 765 3344888888888888888754 5677888888888888888886 777887776 7888888888863
Q ss_pred cccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCC
Q 011233 157 PAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFK 236 (490)
Q Consensus 157 ~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~ 236 (490)
++.+|+.+..+..|+.|+|++|.+...--..+-.+++|+.|.+++ .+-+ ...+|..+..+.
T Consensus 162 -----------------Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~-TqRT-l~N~Ptsld~l~ 222 (1255)
T KOG0444|consen 162 -----------------LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN-TQRT-LDNIPTSLDDLH 222 (1255)
T ss_pred -----------------hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc-ccch-hhcCCCchhhhh
Confidence 456677777788888888888765433223344556677777776 3322 156788888888
Q ss_pred CCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecc
Q 011233 237 SLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAII 316 (490)
Q Consensus 237 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls 316 (490)
+|..+|++.|+ ...+|+.+.++++|+.|++|+|++++ +........+|++|+++.|++ +.+|+.++.++.|+.|.+.
T Consensus 223 NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 223 NLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhccccccC-CCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhc
Confidence 88888888854 45677778888888888888888877 555566677888888888554 5677778888888888888
Q ss_pred ccccc-ccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCC
Q 011233 317 DCKNF-KRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 317 ~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~ 390 (490)
+|++. +.+|..++.+.+|+.+..++|.+.-+|+.+..|+.|+.|.|++|++.++|+++.-++.|+.||+..|+-
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcC
Confidence 88764 457888888888888888888888888888888888888888888888888888888888888888873
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.8e-33 Score=258.04 Aligned_cols=372 Identities=23% Similarity=0.297 Sum_probs=226.3
Q ss_pred ceEEEecCCcCccccccCCCC-CCCccceeeecccccccc---ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCC
Q 011233 4 LRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL---NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSH 79 (490)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~ 79 (490)
|.+|.+.+ +.....|..+ .+..++.++.++|.+..+ +.....++++++++|.+..+|+.++.+..|+.++..+
T Consensus 70 l~vl~~~~---n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHD---NKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEecc---chhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence 34444444 3334444444 555666666666665555 5555666666666666666666666666666666666
Q ss_pred CCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcc
Q 011233 80 SESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPA 158 (490)
Q Consensus 80 n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~ 158 (490)
|++.+.++++.++.+|..+++.+|++....|..+. ++.|++||...|- .+.+|+.++ +.+|..|++..|.+.. .|
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~-lP- 222 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRF-LP- 222 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccccc-CC-
Confidence 66555444666666666666666655544444443 6677777766653 667777777 7777777777765443 33
Q ss_pred cccchhhhhhhhh---ccCCcCCccc-cccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCccccc
Q 011233 159 ISSSLIPLLSLIK---VGIKELPSSI-ECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCM 234 (490)
Q Consensus 159 ~~~~~~~~L~~~~---~~~~~lp~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~ 234 (490)
.|..+. .|..++ +.++.+|+.. .+++++.+||+.+|++ ...|+++.-+++|+.||+++ |.+ ..+|..+++
T Consensus 223 ef~gcs-~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSN-N~i---s~Lp~sLgn 296 (565)
T KOG0472|consen 223 EFPGCS-LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSN-NDI---SSLPYSLGN 296 (565)
T ss_pred CCCccH-HHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccC-Ccc---ccCCccccc
Confidence 233333 344333 6666677554 3788888888888654 45677777888888888888 777 677777777
Q ss_pred CCCCcEEEccCCCCCC----------------------------------------------------------------
Q 011233 235 FKSLASLEIINCPKLE---------------------------------------------------------------- 250 (490)
Q Consensus 235 l~~L~~L~l~~n~~~~---------------------------------------------------------------- 250 (490)
+ .|+.|.+.+|.+-+
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 77777777764210
Q ss_pred ccCccccCcc---ccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcc
Q 011233 251 RLPDELGNSK---ALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNE 327 (490)
Q Consensus 251 ~~p~~~~~l~---~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 327 (490)
.+|+...... -....+++.|++.+ +|..+..+..+.+.-+.+++..+-+|..++.+++|..|++++|. ...+|..
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e 453 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEE 453 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchh
Confidence 0111110000 13344555555544 44444444433333333334444444555555555555555553 4445555
Q ss_pred cCCccccceeeccCc-----------------------ccccCCc-cccCCCCCCEEeCcCCCCCCCchhhhccCCCCEE
Q 011233 328 LGNLKCLVVLIVKGT-----------------------AIREVPE-SLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYL 383 (490)
Q Consensus 328 ~~~l~~L~~L~L~~n-----------------------~l~~~p~-~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L 383 (490)
++.+..|+.|+++.| ++..+++ .++++.+|.+||+.+|.+..+|+.++++++|++|
T Consensus 454 ~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHL 533 (565)
T ss_pred hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEE
Confidence 555555555555555 4444443 3778899999999999999999999999999999
Q ss_pred ecCCCCCc
Q 011233 384 KLFDNNFK 391 (490)
Q Consensus 384 ~ls~n~~~ 391 (490)
++++|+|.
T Consensus 534 eL~gNpfr 541 (565)
T KOG0472|consen 534 ELDGNPFR 541 (565)
T ss_pred EecCCccC
Confidence 99999985
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=5.1e-34 Score=262.93 Aligned_cols=425 Identities=24% Similarity=0.261 Sum_probs=215.6
Q ss_pred CCCccceeeecccccccc---ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecC
Q 011233 25 PLTEVRYFEWHQFPLETL---NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLG 101 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~ 101 (490)
.+..+.++.+++|.+..+ +..+..++.++.++|++..+|+.+..+.+|+.++.++|.+....++++.+-.|+.++..
T Consensus 66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 444444555555544444 34444444555555555555555555555555555555444444445555555555554
Q ss_pred CCCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhh---ccCCcCC
Q 011233 102 SCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIK---VGIKELP 178 (490)
Q Consensus 102 ~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~---~~~~~lp 178 (490)
+|++. ..|+++.++.+|..+++.+|+....-|..+.++.|+++|.-.| ..+.+|+.++.+. +|..++ +.+..+|
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~-~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLE-SLELLYLRRNKIRFLP 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchh-hhHHHHhhhcccccCC
Confidence 44332 2344444555555555555542222222222555555555442 3344444444444 333333 4444444
Q ss_pred ccccccccCcEEEeccCCCccccccccc-CCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcccc
Q 011233 179 SSIECLSKLDRLSIQDCTRLENISSSIF-KLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELG 257 (490)
Q Consensus 179 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 257 (490)
.|..+..|..++++.|. ...+|.+.. +++++..||+.+ |++ +..|+.+.-+++|+.||+++|.+. .+|..++
T Consensus 223 -ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRd-Nkl---ke~Pde~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRD-NKL---KEVPDEICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred -CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccc-ccc---ccCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence 44555555555554432 233343322 555555555555 555 455555555555555555554333 3444455
Q ss_pred CccccceeEccCccccccchhhH------------------------------------------hhccccccccccccc
Q 011233 258 NSKALEELRVEGAAIRERLPESL------------------------------------------GQLALLCELKMIKCS 295 (490)
Q Consensus 258 ~l~~L~~L~ls~n~l~~~~~~~~------------------------------------------~~l~~L~~L~l~~n~ 295 (490)
++ .|+.|.+.+|.+.. +-..+ ....+.+.|++++-+
T Consensus 296 nl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred cc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 55 55555555554421 10000 111122222222211
Q ss_pred cccccCccccCc---cccceeecccccccccCCcccCCccccc-eeeccCcccccCCccccCCCCCCEEeCcCCCCCCCc
Q 011233 296 SFESLPSSLCML---KYLTSLAIIDCKNFKRLPNELGNLKCLV-VLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTP 371 (490)
Q Consensus 296 ~~~~~~~~~~~l---~~L~~L~Ls~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~ 371 (490)
.+.+|...... .-....+++.|+ ...+|..+..+..++ .+.+++|.+.-+|..+..+++|..|++++|-+..+|
T Consensus 374 -lt~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP 451 (565)
T KOG0472|consen 374 -LTLVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP 451 (565)
T ss_pred -cccCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc
Confidence 11122111111 113445555554 334455454444433 456667777778888888999999999999999999
Q ss_pred hhhhccCCCCEEecCCCCCccccccccccccCCcccchhhhhhhhccccceeeecCeeeeccchhhhcccccceeeeEec
Q 011233 372 ASLYQLSSIKYLKLFDNNFKHRLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTA 451 (490)
Q Consensus 372 ~~l~~l~~L~~L~ls~n~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~ 451 (490)
..++.+..|+.||++.|+|..--..++. ....+.+.... .++... ......+++.+..||+.+|.+..+
T Consensus 452 ~e~~~lv~Lq~LnlS~NrFr~lP~~~y~-----lq~lEtllas~-----nqi~~v-d~~~l~nm~nL~tLDL~nNdlq~I 520 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNRFRMLPECLYE-----LQTLETLLASN-----NQIGSV-DPSGLKNMRNLTTLDLQNNDLQQI 520 (565)
T ss_pred hhhhhhhhhheecccccccccchHHHhh-----HHHHHHHHhcc-----cccccc-ChHHhhhhhhcceeccCCCchhhC
Confidence 8888888899999999976422111110 00000000000 000000 111223478889999999999984
Q ss_pred cccccccccccceeeeeccccccCC
Q 011233 452 LGRKVWRMTGNATCLMCSVIGNSNP 476 (490)
Q Consensus 452 ~p~~~~~~~~~~~~l~~s~~~~~~~ 476 (490)
|... +...+++.|.++.+.+.+.
T Consensus 521 -Pp~L-gnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 521 -PPIL-GNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred -Chhh-ccccceeEEEecCCccCCC
Confidence 5544 5677899999999988876
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.2e-32 Score=264.62 Aligned_cols=353 Identities=22% Similarity=0.289 Sum_probs=295.9
Q ss_pred CCcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc---ccCCCCccEEEcCCCCcc--cccccccCCCCCCE
Q 011233 1 MTELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL---NINGENLVSLKMPGRKVK--QLWNDVRNLVNLKY 74 (490)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~i~--~l~~~~~~l~~L~~ 74 (490)
|++++-|.+.. .....+|+.+ .+.+|++|.+++|++..+ ...++.|+.+++..|+++ +||..+..+..|..
T Consensus 31 Mt~~~WLkLnr---t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNR---TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred hhheeEEEech---hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 56777788877 4456678888 889999999999999888 788999999999999996 69999999999999
Q ss_pred EecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCC
Q 011233 75 IDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSK 152 (490)
Q Consensus 75 L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~ 152 (490)
||||+|++. +.| .+..-+++-.|+||+|++-+....-+.+++.|-.||||+|+ ...+|+.+. +..|++|++++|++
T Consensus 108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChh
Confidence 999999954 555 89999999999999988755444667899999999999998 788899888 99999999999864
Q ss_pred CCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCc-ccccccccCCCCCCEEecccCCCCCCCCCCCcc
Q 011233 153 LKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRL-ENISSSIFKLKSLQYIEIKRCSNLKSLESLPNN 231 (490)
Q Consensus 153 ~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~ 231 (490)
... .+.++| .+++|++|.+++.+.+ ..+|.++..+.+|..++++. |++ ..+|+.
T Consensus 186 ~hf-----------------QLrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~L---p~vPec 240 (1255)
T KOG0444|consen 186 NHF-----------------QLRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNL---PIVPEC 240 (1255)
T ss_pred hHH-----------------HHhcCc----cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCC---CcchHH
Confidence 322 122344 3677889999886554 46899999999999999999 898 789999
Q ss_pred cccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccccccccccccccc-ccCccccCcccc
Q 011233 232 LCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFE-SLPSSLCMLKYL 310 (490)
Q Consensus 232 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L 310 (490)
+..+++|+.|++++|.+.. +........+|++|++|.|+++. +|.+++.+++|+.|...+|++.- -+|..++.+.+|
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 9999999999999987654 33345567899999999999998 99999999999999999988754 489999999999
Q ss_pred ceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCC-chhhhccCCCCEEecC
Q 011233 311 TSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERT-PASLYQLSSIKYLKLF 386 (490)
Q Consensus 311 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls 386 (490)
+.+..++|+ .+.+|+.++.|..|+.|.|++|++..+|+.+.-++.|+.||+..|.--.. |..-..-++|+.-++.
T Consensus 319 evf~aanN~-LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 319 EVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred HHHHhhccc-cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 999999987 78899999999999999999999999999999999999999998854333 2211222456654443
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=6.5e-28 Score=268.87 Aligned_cols=342 Identities=33% Similarity=0.530 Sum_probs=239.6
Q ss_pred CCcceEEEecCCc----CccccccCCCC--CCCccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCC
Q 011233 1 MTELRTLKFYGSE----NKCMVSSLEGV--PLTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNL 72 (490)
Q Consensus 1 l~~L~~L~l~~~~----~~~~~~~~~~~--~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 72 (490)
|++|+.|.+.... ......+|.++ .+.+|+.|++.++.++.+ ...+.+|++|+++++.+..+|..+..+++|
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~L 636 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGL 636 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCC
Confidence 5788888886532 22334566766 566899999999888877 345788999999999998888888889999
Q ss_pred CEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCC
Q 011233 73 KYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSK 152 (490)
Q Consensus 73 ~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~ 152 (490)
++|+++++...+.+|.++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+.+++|+.|++++|..
T Consensus 637 k~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~ 716 (1153)
T PLN03210 637 RNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSR 716 (1153)
T ss_pred CEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCC
Confidence 99999988777888888889999999999988888888889999999999999887788888877788888888888754
Q ss_pred CCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCccc
Q 011233 153 LKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNL 232 (490)
Q Consensus 153 ~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~ 232 (490)
.+.+|. ..++|+.|++++|.+ ..+|..+ .+++|++|.+.+|... .+...+
T Consensus 717 L~~~p~------------------------~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~----~l~~~~ 766 (1153)
T PLN03210 717 LKSFPD------------------------ISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSE----KLWERV 766 (1153)
T ss_pred cccccc------------------------ccCCcCeeecCCCcc-ccccccc-cccccccccccccchh----hccccc
Confidence 433221 124677788877664 3455433 4667777777653211 111100
Q ss_pred ccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccce
Q 011233 233 CMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTS 312 (490)
Q Consensus 233 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 312 (490)
. ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.
T Consensus 767 ~----------------~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~ 829 (1153)
T PLN03210 767 Q----------------PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLES 829 (1153)
T ss_pred c----------------ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCE
Confidence 0 0011112223566667776665555566667777777777777776666666554 5677777
Q ss_pred eecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcC-CCCCCCchhhhccCCCCEEecCCCCCc
Q 011233 313 LAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSN-NNLERTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 313 L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~-n~l~~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
|++++|.....+|.. ..+|+.|++++|.++.+|.++..+++|++|++++ ++++.+|..+..+++|+.+++++|..+
T Consensus 830 L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 830 LDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred EECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 777777666555542 2467777777777777777777777777777777 456677766777777777777777644
Q ss_pred c
Q 011233 392 H 392 (490)
Q Consensus 392 ~ 392 (490)
.
T Consensus 907 ~ 907 (1153)
T PLN03210 907 T 907 (1153)
T ss_pred c
Confidence 3
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=3.8e-30 Score=259.76 Aligned_cols=373 Identities=22% Similarity=0.202 Sum_probs=208.1
Q ss_pred ceEEEecCCcCccccccCCCC-CCCccceeeecccccccc---ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCC
Q 011233 4 LRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL---NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSH 79 (490)
Q Consensus 4 L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~ 79 (490)
|+.|++++ +...+.|..+ .+.+|+.|.++.|.+..+ +..+.+|+++.|.+|.+..+|..+..+.+|++||+|+
T Consensus 47 L~~l~lsn---n~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSN---NQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccc---cccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 77788887 4556667767 778888888888888777 6778888888888888888888888888888888888
Q ss_pred CCCCCCCCCcccCCCCcEEecCCC-------------------CCCcccchhhhccccCcEEEccCCCCCCcCCc-----
Q 011233 80 SESLTKLPDLSLARNLEILDLGSC-------------------SSLTETHSSIQYLNKLEVLDLRHCESLGSLPT----- 135 (490)
Q Consensus 80 n~~~~~~~~~~~l~~L~~L~L~~n-------------------~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~----- 135 (490)
|.+....+.+..+..++.++.++| .+.+.++..+..+++ .|||++|......-.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccch
Confidence 875543334444444444444443 333444444444444 477777664310000
Q ss_pred -----------ccc--cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccccc
Q 011233 136 -----------SIH--SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENIS 202 (490)
Q Consensus 136 -----------~~~--l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~ 202 (490)
.+. .++|+.|+.++|.+....+.......+.+.+..+....+|.|+..+.+|+.++..+|.+ ..+|
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp 280 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALP 280 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhH
Confidence 000 35566666666665543333332222344455566777777777888888888877766 4566
Q ss_pred ccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcc-ccCcc-ccceeEccCccccccchh-h
Q 011233 203 SSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDE-LGNSK-ALEELRVEGAAIRERLPE-S 279 (490)
Q Consensus 203 ~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~-~L~~L~ls~n~l~~~~~~-~ 279 (490)
..+....+|+.|++.. |.+ ..+|.....++.|++|++..|++.. +|+. +.... .++.+..+.|++.. .|. .
T Consensus 281 ~ri~~~~~L~~l~~~~-nel---~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~ 354 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAY-NEL---EYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLST-LPSYE 354 (1081)
T ss_pred HHHhhhhhHHHHHhhh-hhh---hhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccc-ccccc
Confidence 6666777777777777 666 6667777777788888887765432 3321 11111 13333333333332 121 1
Q ss_pred HhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCE
Q 011233 280 LGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVR 359 (490)
Q Consensus 280 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~ 359 (490)
=...+.|+.|++.+|.+....-..+.+.++|+.|+|++|++.......+.+++.|++|+|+||.++.+|+.+..++.|++
T Consensus 355 e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 355 ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 11223444444444444443333344444455555555442222222334444445555555554444444444444444
Q ss_pred EeCcCCCCCCCchhhhccCCCCEEecCCCC
Q 011233 360 LDLSNNNLERTPASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 360 L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~ 389 (490)
|...+|++..+| .+..+++|+.+|+|.|.
T Consensus 435 L~ahsN~l~~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 435 LRAHSNQLLSFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred HhhcCCceeech-hhhhcCcceEEecccch
Confidence 444444444444 34444444444444444
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=3.6e-29 Score=252.75 Aligned_cols=150 Identities=25% Similarity=0.296 Sum_probs=80.1
Q ss_pred CCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecc
Q 011233 237 SLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAII 316 (490)
Q Consensus 237 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls 316 (490)
+|+++++++|.+.+ +|+++..+.+|+.+.+.+|+++. +|..+...++|+.|.+..|.+. -+|....+.++|++|+|.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 55555555543332 34555555555555555555544 5555555555555555554432 233334445555555555
Q ss_pred cccccccCCcc------------------------c--CCccccceeeccCccccc-CCccccCCCCCCEEeCcCCCCCC
Q 011233 317 DCKNFKRLPNE------------------------L--GNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLER 369 (490)
Q Consensus 317 ~n~~~~~~~~~------------------------~--~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~~ 369 (490)
.|++. .+|+- . ..++.|+.|.+.+|.+++ .-+.+.++++|+.|+|++|++.+
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 55432 12210 1 123456666666666666 33345566666666666666666
Q ss_pred Cch-hhhccCCCCEEecCCCCC
Q 011233 370 TPA-SLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 370 l~~-~l~~l~~L~~L~ls~n~~ 390 (490)
+|. .+.+++.|+.|+||+|++
T Consensus 398 fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchh
Confidence 653 344566666666666664
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.4e-23 Score=234.39 Aligned_cols=304 Identities=27% Similarity=0.400 Sum_probs=246.4
Q ss_pred CcceEEEecCCcCccccccCCCCCCCccceeeecccccccc---ccCCCCccEEEcCCCC-cccccccccCCCCCCEEec
Q 011233 2 TELRTLKFYGSENKCMVSSLEGVPLTEVRYFEWHQFPLETL---NINGENLVSLKMPGRK-VKQLWNDVRNLVNLKYIDL 77 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~L 77 (490)
.+||.|++.+. .....|..+.+.+|++|++.+|.+..+ ...+++|+.|+|+++. ++.+| .+..+++|++|++
T Consensus 589 ~~Lr~L~~~~~---~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKY---PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCC---CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 36899999883 446677788889999999999998887 6678999999999875 56676 4788999999999
Q ss_pred CCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCC
Q 011233 78 SHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNH 156 (490)
Q Consensus 78 s~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~ 156 (490)
++|.....+| .+..+++|++|++++|...+.+|..+ ++++|++|++++|...+.+|.. ..+|+.|++++|.+. .+
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~l 740 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EF 740 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cc
Confidence 9998888888 88999999999999998888888766 7999999999999877777643 578999999998754 44
Q ss_pred cccccchhhhhhhhh---cc-------CCcCC-ccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCC
Q 011233 157 PAISSSLIPLLSLIK---VG-------IKELP-SSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSL 225 (490)
Q Consensus 157 ~~~~~~~~~~L~~~~---~~-------~~~lp-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~ 225 (490)
|... .+. .|..+. .. ...++ ......++|+.|++++|...+.+|.+++++++|+.|++++|+.+
T Consensus 741 P~~~-~l~-~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L--- 815 (1153)
T PLN03210 741 PSNL-RLE-NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL--- 815 (1153)
T ss_pred cccc-ccc-ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc---
Confidence 5432 111 233222 11 11111 12233568999999999988999999999999999999998888
Q ss_pred CCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCcccc
Q 011233 226 ESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLC 305 (490)
Q Consensus 226 ~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 305 (490)
+.+|..+ .+++|+.|++++|.....+|.. .++|++|++++|.++. +|.++..+++|+.|++++|+....+|..+.
T Consensus 816 ~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 816 ETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred CeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 6677765 7899999999999888777764 4689999999999987 899999999999999999988888888888
Q ss_pred Cccccceeeccccccccc
Q 011233 306 MLKYLTSLAIIDCKNFKR 323 (490)
Q Consensus 306 ~l~~L~~L~Ls~n~~~~~ 323 (490)
.+++|+.+++++|.....
T Consensus 891 ~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cccCCCeeecCCCccccc
Confidence 899999999999975543
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.2e-24 Score=198.13 Aligned_cols=267 Identities=14% Similarity=0.103 Sum_probs=192.0
Q ss_pred CCCccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEecCCCCCCCCCC--CcccCCCCcE
Q 011233 25 PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYIDLSHSESLTKLP--DLSLARNLEI 97 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~ 97 (490)
.+++..+++|+.|.++.+ |..+++||+||||+|.|+.| |..|..+++|..|-+.+|+-+..+| .|+.+..|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 456889999999999999 89999999999999999998 6899999999998888855566777 8999999999
Q ss_pred EecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCccc-c-cCCccEEeecCCCCCCCC------------ccc--cc
Q 011233 98 LDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSI-H-SKYIEELDFVGCSKLKNH------------PAI--SS 161 (490)
Q Consensus 98 L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~-l~~L~~L~ls~n~~~~~~------------~~~--~~ 161 (490)
|.+.-|.+.-...+.|..+++|..|.+.+|. ...+++.. . +..++.+.+..|.+...- |-. ..
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 9999998888888999999999999999986 66777743 3 889999999888743221 100 11
Q ss_pred chhhhhhhhhccCCcCCcc-c-cccccCcEEEeccCCCcccccc-cccCCCCCCEEecccCCCCCCCCCCCcccccCCCC
Q 011233 162 SLIPLLSLIKVGIKELPSS-I-ECLSKLDRLSIQDCTRLENISS-SIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSL 238 (490)
Q Consensus 162 ~~~~~L~~~~~~~~~lp~~-~-~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L 238 (490)
.+.....+-+..+.++++. | ..++.+..--.+.+...+..|. .|..+++|++|++++ |+++ +.-+.+|.....+
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~--~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKIT--RIEDGAFEGAAEL 300 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccc--hhhhhhhcchhhh
Confidence 1111222222333333311 1 1111221111223333344443 377888888888888 8886 4445677788888
Q ss_pred cEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccc
Q 011233 239 ASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCS 295 (490)
Q Consensus 239 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 295 (490)
++|.+..|++...-...|.++..|+.|++.+|+|+...|.+|..+..|.+|.+-.|.
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 888888877666555667778888888888888888778888888888888887654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1e-20 Score=197.32 Aligned_cols=260 Identities=22% Similarity=0.222 Sum_probs=134.7
Q ss_pred CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccC
Q 011233 47 ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRH 126 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 126 (490)
..-..|+|+.++++.+|..+. ++|+.|++++|++.. +|.. +++|++|++++|++.. +|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 456678888888888876665 378888888877543 4432 4677777777776553 3432 35667777777
Q ss_pred CCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccccccccc
Q 011233 127 CESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIF 206 (490)
Q Consensus 127 n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 206 (490)
|. ...+|.. ..+|+.|++++|.+. .+|. ..++|+.|++++|.+.+ +|..
T Consensus 272 N~-L~~Lp~l--p~~L~~L~Ls~N~Lt----------------------~LP~---~p~~L~~LdLS~N~L~~-Lp~l-- 320 (788)
T PRK15387 272 NP-LTHLPAL--PSGLCKLWIFGNQLT----------------------SLPV---LPPGLQELSVSDNQLAS-LPAL-- 320 (788)
T ss_pred Cc-hhhhhhc--hhhcCEEECcCCccc----------------------cccc---cccccceeECCCCcccc-CCCC--
Confidence 65 3344431 345566666665322 2222 12456666666655443 2321
Q ss_pred CCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccc
Q 011233 207 KLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALL 286 (490)
Q Consensus 207 ~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 286 (490)
...|+.|++++ |.++ .+|.. ..+|++|++++|.+.+ +|.. .++|+.|++++|.+++ +|..
T Consensus 321 -p~~L~~L~Ls~-N~L~---~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l------- 380 (788)
T PRK15387 321 -PSELCKLWAYN-NQLT---SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL------- 380 (788)
T ss_pred -ccccccccccc-Cccc---ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-------
Confidence 12355555555 5552 23321 1245555555544332 3321 2334445555555543 3321
Q ss_pred ccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCC
Q 011233 287 CELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNN 366 (490)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~ 366 (490)
..+|+.|++++|++.+ +|.. .++|+.|++++|+++.+|.. ..+|+.|++++|+
T Consensus 381 --------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq 433 (788)
T PRK15387 381 --------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ 433 (788)
T ss_pred --------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc
Confidence 1244555555554332 3321 13455555555555555532 2345555555555
Q ss_pred CCCCchhhhccCCCCEEecCCCCCccc
Q 011233 367 LERTPASLYQLSSIKYLKLFDNNFKHR 393 (490)
Q Consensus 367 l~~l~~~l~~l~~L~~L~ls~n~~~~~ 393 (490)
++.+|..+..+++|+.|++++|++.+.
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccccChHHhhccCCCeEECCCCCCCch
Confidence 555555555555555555555555443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-22 Score=185.56 Aligned_cols=308 Identities=16% Similarity=0.132 Sum_probs=205.3
Q ss_pred cEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCC
Q 011233 50 VSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCE 128 (490)
Q Consensus 50 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 128 (490)
...+.++-+++.+|..+. +.-..++|..|.+....| .|..+++|+.|||++|++..+.|.+|.++.+|..|-+.+|.
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 356777778888887665 367788999998666555 89999999999999999999999999999998888777744
Q ss_pred CCCcCCcccc--cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCC-ccccccccCcEEEeccCCCcccccccc
Q 011233 129 SLGSLPTSIH--SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELP-SSIECLSKLDRLSIQDCTRLENISSSI 205 (490)
Q Consensus 129 ~~~~~p~~~~--l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~~~~~ 205 (490)
.+..+|+..+ +..|+.|.+.-|... -++ ..|..++++..|.+.+|.+...-...|
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~----------------------Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHIN----------------------CIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhc----------------------chhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 4667776554 555555555444221 122 344556666666666655544333456
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhc-c
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQL-A 284 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l-~ 284 (490)
..+..++.+.+.. |.+-. ..+++.+.. .....|..++......-..+.+.++...-+..|... .
T Consensus 185 ~~l~~i~tlhlA~-np~ic-------dCnL~wla~-------~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e 249 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQ-NPFIC-------DCNLPWLAD-------DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE 249 (498)
T ss_pred cchhccchHhhhc-Ccccc-------ccccchhhh-------HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence 6666666666655 33210 111111111 111123334444444444455555554333333322 1
Q ss_pred ccccccccccccccccC-ccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCCCCCEEeC
Q 011233 285 LLCELKMIKCSSFESLP-SSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDL 362 (490)
Q Consensus 285 ~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~L 362 (490)
.+..--.+.|......| ..|..+++|++|++++|++.+.-+.+|.+...+++|.|..|++..+. ..|.++..|+.|+|
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L 329 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSL 329 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeee
Confidence 22222223333444433 34788999999999999999999999999999999999999999866 67889999999999
Q ss_pred cCCCCCCC-chhhhccCCCCEEecCCCCCcccccc
Q 011233 363 SNNNLERT-PASLYQLSSIKYLKLFDNNFKHRLLT 396 (490)
Q Consensus 363 s~n~l~~l-~~~l~~l~~L~~L~ls~n~~~~~l~~ 396 (490)
.+|+++.+ |..|..+.+|.+|++-.|++..+..-
T Consensus 330 ~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 330 YDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred cCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 99999977 78888899999999999998654433
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.3e-19 Score=189.03 Aligned_cols=258 Identities=23% Similarity=0.206 Sum_probs=152.9
Q ss_pred Cccceeeecccccccc-ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCC
Q 011233 27 TEVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSS 105 (490)
Q Consensus 27 ~~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~ 105 (490)
.+-..|+++.+.++.+ ..-.++|+.|++++|+++.+|.. .++|++|++++|++.. +|.. .++|+.|++++|.+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l--p~sL~~L~Ls~N~L 274 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL--PPGLLELSIFSNPL 274 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc--ccccceeeccCCch
Confidence 4456788888888877 22345788999999988888753 4788999999887654 4532 46888899988875
Q ss_pred CcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccc
Q 011233 106 LTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLS 185 (490)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~ 185 (490)
. .+|.. .++|+.|++++|. ...+|.. .++|+.|++++|.+.+ +|... .
T Consensus 275 ~-~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~--p~~L~~LdLS~N~L~~-Lp~lp------------------------~ 322 (788)
T PRK15387 275 T-HLPAL---PSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQLAS-LPALP------------------------S 322 (788)
T ss_pred h-hhhhc---hhhcCEEECcCCc-ccccccc--ccccceeECCCCcccc-CCCCc------------------------c
Confidence 4 34432 2568888898887 4556652 5788999998886553 22211 1
Q ss_pred cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccccee
Q 011233 186 KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEEL 265 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 265 (490)
+|+.|++++|.+.+ +|. -..+|++|++++ |+++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|
T Consensus 323 ~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~-N~Ls---~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~L 387 (788)
T PRK15387 323 ELCKLWAYNNQLTS-LPT---LPSGLQELSVSD-NQLA---SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL 387 (788)
T ss_pred cccccccccCcccc-ccc---cccccceEecCC-CccC---CCCCC---Ccccceehhhccccc-cCccc---ccccceE
Confidence 34455555554432 332 113455666665 5553 23321 234555555555443 24432 2345666
Q ss_pred EccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccc
Q 011233 266 RVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIR 345 (490)
Q Consensus 266 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (490)
++++|.+++ +|.. .++|+.|++++|.+.+ +|.. ..+|+.|++++|++. .+|..++.+++|+.|++++|+++
T Consensus 388 dLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 388 IVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred EecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 666666654 4432 2456666666655443 3432 234556666666543 45656666666666666666666
Q ss_pred c
Q 011233 346 E 346 (490)
Q Consensus 346 ~ 346 (490)
+
T Consensus 459 ~ 459 (788)
T PRK15387 459 E 459 (788)
T ss_pred c
Confidence 5
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=4.6e-19 Score=186.12 Aligned_cols=246 Identities=24% Similarity=0.296 Sum_probs=153.0
Q ss_pred CCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhcc
Q 011233 94 NLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVG 173 (490)
Q Consensus 94 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~ 173 (490)
+...|++++++++ .+|..+. ++|+.|++++|. ...+|..+ .++|+.|++++|.+.
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l-~~nL~~L~Ls~N~Lt-------------------- 233 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNE-LKSLPENL-QGNIKTLYANSNQLT-------------------- 233 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCC-CCcCChhh-ccCCCEEECCCCccc--------------------
Confidence 4556666665443 3444332 356666666665 33455443 246666666665432
Q ss_pred CCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccC
Q 011233 174 IKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLP 253 (490)
Q Consensus 174 ~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p 253 (490)
.+|..+ .++|+.|++++|.+. .+|..+. .+|+.|++++ |++ ..+|..+. ++|+.|++++|.+.+ +|
T Consensus 234 --sLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~-N~L---~~LP~~l~--~sL~~L~Ls~N~Lt~-LP 299 (754)
T PRK15370 234 --SIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFH-NKI---SCLPENLP--EELRYLSVYDNSIRT-LP 299 (754)
T ss_pred --cCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcC-Ccc---CccccccC--CCCcEEECCCCcccc-Cc
Confidence 222222 125677777776654 4454443 4677777776 666 34555442 467777777765543 44
Q ss_pred ccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccc
Q 011233 254 DELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKC 333 (490)
Q Consensus 254 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 333 (490)
..+ .+.|+.|++++|.++. +|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|++. .+|..+. ++
T Consensus 300 ~~l--p~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~ 368 (754)
T PRK15370 300 AHL--PSGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PT 368 (754)
T ss_pred ccc--hhhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CC
Confidence 433 2467777888887776 554332 577888888776554 555443 57888888888754 4555443 57
Q ss_pred cceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhc----cCCCCEEecCCCCCc
Q 011233 334 LVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQ----LSSIKYLKLFDNNFK 391 (490)
Q Consensus 334 L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~----l~~L~~L~ls~n~~~ 391 (490)
|+.|++++|.++.+|+.+. ..|+.|++++|+++.+|..+.. ++++..+++.+|++.
T Consensus 369 L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 369 ITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 8888888888888876553 3688888888888877655443 477888888888864
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=1.4e-18 Score=182.55 Aligned_cols=245 Identities=21% Similarity=0.271 Sum_probs=159.3
Q ss_pred Cccceeeecccccccc-ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCC
Q 011233 27 TEVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCS 104 (490)
Q Consensus 27 ~~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~ 104 (490)
.+...|+++++.++.+ ..-.++++.|++++|.++.+|..+. .+|++|++++|++.+ +| .+ .++|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECcCCc
Confidence 4567888888888887 3345689999999999998886554 589999999888653 45 33 2478999999987
Q ss_pred CCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccccc
Q 011233 105 SLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECL 184 (490)
Q Consensus 105 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l 184 (490)
+. .+|..+. .+|++|++++|++ ..+|..+ .++|+.|++++|++.+ +|. .+.
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l-~~sL~~L~Ls~N~Lt~-LP~---------------------~lp-- 303 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKI-SCLPENL-PEELRYLSVYDNSIRT-LPA---------------------HLP-- 303 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCcc-Ccccccc-CCCCcEEECCCCcccc-Ccc---------------------cch--
Confidence 65 5666554 5789999988874 4677654 3688999999886543 222 111
Q ss_pred ccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccce
Q 011233 185 SKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEE 264 (490)
Q Consensus 185 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 264 (490)
++|+.|++++|.+.. +|..+ .++|+.|++++ |.+ ..+|..+ .++|+.|++++|++. .+|..+ .+.|++
T Consensus 304 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~-N~L---t~LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~ 371 (754)
T PRK15370 304 SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGE-NAL---TSLPASL--PPELQVLDVSKNQIT-VLPETL--PPTITT 371 (754)
T ss_pred hhHHHHHhcCCcccc-CCccc--cccceeccccC-Ccc---ccCChhh--cCcccEEECCCCCCC-cCChhh--cCCcCE
Confidence 246666666665543 34322 24667777776 555 3355443 256777777776554 345433 256777
Q ss_pred eEccCccccccchhhHhhccccccccccccccccccCccc----cCccccceeeccccccc
Q 011233 265 LRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSL----CMLKYLTSLAIIDCKNF 321 (490)
Q Consensus 265 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L~Ls~n~~~ 321 (490)
|++++|+++. +|..+. ..|+.|++++|++. .+|..+ ...+.+..|++.+|++.
T Consensus 372 LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 372 LDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred EECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 7777777765 555443 35777777776654 334332 33466677777777654
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.1e-19 Score=176.82 Aligned_cols=211 Identities=21% Similarity=0.223 Sum_probs=131.5
Q ss_pred ccccccccCcEEEeccCCCcccccccccCCCC---CCEEecccCCCCCCC--CCCCcccccC-CCCcEEEccCCCCCCc-
Q 011233 179 SSIECLSKLDRLSIQDCTRLENISSSIFKLKS---LQYIEIKRCSNLKSL--ESLPNNLCMF-KSLASLEIINCPKLER- 251 (490)
Q Consensus 179 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~---L~~L~L~~~n~l~~~--~~l~~~~~~l-~~L~~L~l~~n~~~~~- 251 (490)
..+..+++|+.|++++|.+.+..+..+..+.. |++|++++ +.+... ..+...+..+ ++|+.|++++|.+.+.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~-~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNN-NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeC-CccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 34445667777777777665544444443333 77777777 444310 0122234455 6777777777776632
Q ss_pred ---cCccccCccccceeEccCcccccc----chhhHhhccccccccccccccccc----cCccccCccccceeecccccc
Q 011233 252 ---LPDELGNSKALEELRVEGAAIRER----LPESLGQLALLCELKMIKCSSFES----LPSSLCMLKYLTSLAIIDCKN 320 (490)
Q Consensus 252 ---~p~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~~ 320 (490)
++..+..+++|++|++++|.+++. ++..+...++|++|++++|.+.+. ++..+..+++|++|++++|.+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence 333455566788888888877642 233344556788888888766532 334456677888888888876
Q ss_pred cccCCcccC-----CccccceeeccCccccc-----CCccccCCCCCCEEeCcCCCCCCC-----chhhhcc-CCCCEEe
Q 011233 321 FKRLPNELG-----NLKCLVVLIVKGTAIRE-----VPESLGQLSSIVRLDLSNNNLERT-----PASLYQL-SSIKYLK 384 (490)
Q Consensus 321 ~~~~~~~~~-----~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~L~Ls~n~l~~l-----~~~l~~l-~~L~~L~ 384 (490)
.+.....+. ..+.|++|++++|.+++ +...+..+++|+++++++|.++.- ...+... +.|++++
T Consensus 234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 234 TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 652222221 24688888888888863 444556668889999999888832 3344444 6888888
Q ss_pred cCCCCC
Q 011233 385 LFDNNF 390 (490)
Q Consensus 385 ls~n~~ 390 (490)
+.+|++
T Consensus 314 ~~~~~~ 319 (319)
T cd00116 314 VKDDSF 319 (319)
T ss_pred cCCCCC
Confidence 888864
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=5.6e-19 Score=171.74 Aligned_cols=260 Identities=19% Similarity=0.156 Sum_probs=126.3
Q ss_pred ccCCCCccEEEcCCCCcc-----cccccccCCCCCCEEecCCCCCCCC------CC-CcccCCCCcEEecCCCCCCcccc
Q 011233 43 NINGENLVSLKMPGRKVK-----QLWNDVRNLVNLKYIDLSHSESLTK------LP-DLSLARNLEILDLGSCSSLTETH 110 (490)
Q Consensus 43 ~~~~~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~Ls~n~~~~~------~~-~~~~l~~L~~L~L~~n~~~~~~~ 110 (490)
+....+|++|+++++.++ .+++.+...+++++++++++.+.+. ++ .+..+++|++|++++|.+.+..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 455566777777777763 2445556666777777777654320 11 23445566666666655554444
Q ss_pred hhhhcccc---CcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccccc-cc
Q 011233 111 SSIQYLNK---LEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECL-SK 186 (490)
Q Consensus 111 ~~l~~l~~---L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l-~~ 186 (490)
..+..+.+ |++|++++|++.+.-... +...+..+ ++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~----------------------------------------l~~~l~~~~~~ 138 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRL----------------------------------------LAKGLKDLPPA 138 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHH----------------------------------------HHHHHHhCCCC
Confidence 44443333 555555555432110000 00112222 34
Q ss_pred CcEEEeccCCCccc----ccccccCCCCCCEEecccCCCCCCC--CCCCcccccCCCCcEEEccCCCCCCc----cCccc
Q 011233 187 LDRLSIQDCTRLEN----ISSSIFKLKSLQYIEIKRCSNLKSL--ESLPNNLCMFKSLASLEIINCPKLER----LPDEL 256 (490)
Q Consensus 187 L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~~n~l~~~--~~l~~~~~~l~~L~~L~l~~n~~~~~----~p~~~ 256 (490)
|+.|++++|.+.+. +...+..+++|++|++++ +.++.. ..++..+...++|++|++++|.+.+. ++..+
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC-CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 44444444444421 122233444455555555 333210 01122233334555555555544322 22334
Q ss_pred cCccccceeEccCccccccchhhHhh-----cccccccccccccccc----ccCccccCccccceeeccccccccc----
Q 011233 257 GNSKALEELRVEGAAIRERLPESLGQ-----LALLCELKMIKCSSFE----SLPSSLCMLKYLTSLAIIDCKNFKR---- 323 (490)
Q Consensus 257 ~~l~~L~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~Ls~n~~~~~---- 323 (490)
..+++|++|++++|.+++.....+.. .+.|++|++++|.+.. .+...+..+++|+++++++|.+...
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 44566666666666665422222221 2566677776665541 2233344456777777777776543
Q ss_pred CCcccCCc-cccceeeccCcc
Q 011233 324 LPNELGNL-KCLVVLIVKGTA 343 (490)
Q Consensus 324 ~~~~~~~l-~~L~~L~L~~n~ 343 (490)
+...+... +.|+.+++.+|.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhhcCCchhhcccCCCC
Confidence 33233333 567777777664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-18 Score=142.67 Aligned_cols=182 Identities=23% Similarity=0.439 Sum_probs=129.4
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccc
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLAL 285 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 285 (490)
.++.+.+.|.+++ |++ ..+|..+..+.+|+.|++++|+ .+.+|..++.+++|+.|.++.|++.- +|..|+.++.
T Consensus 30 f~~s~ITrLtLSH-NKl---~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~ 103 (264)
T KOG0617|consen 30 FNMSNITRLTLSH-NKL---TVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPA 103 (264)
T ss_pred cchhhhhhhhccc-Cce---eecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhc-CccccCCCch
Confidence 3445556666666 666 5566666667777777776654 34566667777777777777777765 7777777777
Q ss_pred cccccccccccccc-cCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcC
Q 011233 286 LCELKMIKCSSFES-LPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSN 364 (490)
Q Consensus 286 L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~ 364 (490)
|+.||+..|++.+. +|..|..+..|+.|.+++|. .+.+|..++.+.+|+.|.+..|.+-++|..++.+..|+.|.+.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 77777777776543 67777777777778887776 55667778888888888888888888888888888888888888
Q ss_pred CCCCCCchhhhccC---CCCEEecCCCCCcccc
Q 011233 365 NNLERTPASLYQLS---SIKYLKLFDNNFKHRL 394 (490)
Q Consensus 365 n~l~~l~~~l~~l~---~L~~L~ls~n~~~~~l 394 (490)
|+++.+|..++.+. +=+.+.+.+|++...+
T Consensus 183 nrl~vlppel~~l~l~~~k~v~r~E~NPwv~pI 215 (264)
T KOG0617|consen 183 NRLTVLPPELANLDLVGNKQVMRMEENPWVNPI 215 (264)
T ss_pred ceeeecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence 88888877666542 2234555666665444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.3e-16 Score=131.69 Aligned_cols=156 Identities=21% Similarity=0.316 Sum_probs=140.8
Q ss_pred ccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccce
Q 011233 233 CMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTS 312 (490)
Q Consensus 233 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 312 (490)
..+..+..|.+++|.+ ..+|..++.+.+|+.|.+++|++++ +|..+..+++|+.|+++-|. ...+|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence 3566778888999755 4566678999999999999999998 99999999999999998755 4568899999999999
Q ss_pred eecccccccc-cCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCc
Q 011233 313 LAIIDCKNFK-RLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 313 L~Ls~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
||++.|++.+ .+|..|..+..|+-|.++.|.+.-+|..++.+.+|+.|.+.+|.+-++|..++.+++|++|.+.+|++.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 9999998765 579999999999999999999999999999999999999999999999999999999999999999863
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=9.8e-12 Score=133.26 Aligned_cols=129 Identities=23% Similarity=0.276 Sum_probs=105.0
Q ss_pred CCCCCCCccceeeecccccccc--ccCCCCccEEEcCCCC--ccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCC
Q 011233 21 LEGVPLTEVRYFEWHQFPLETL--NINGENLVSLKMPGRK--VKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARN 94 (490)
Q Consensus 21 ~~~~~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~--i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~ 94 (490)
+........++..+.++.+..+ -..++.|++|-+.+|. +..++ +.|..++.|++|||++|.-.+.+| .++++-+
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 3344667888888888888777 5556789999999996 66665 557889999999999998888888 8899999
Q ss_pred CcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCC
Q 011233 95 LEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGC 150 (490)
Q Consensus 95 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n 150 (490)
||+|++++..+ ..+|..++++..|.+|++..+.....+|.... +++|++|.+...
T Consensus 597 LryL~L~~t~I-~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 597 LRYLDLSDTGI-SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhcccccCCCc-cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 99999999664 47899999999999999988776666666555 899999988764
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=6.2e-13 Score=129.39 Aligned_cols=177 Identities=25% Similarity=0.357 Sum_probs=87.1
Q ss_pred CcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeE
Q 011233 187 LDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELR 266 (490)
Q Consensus 187 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 266 (490)
-...|++.|++ ..+|..+..+..|+.+.+.. |.+ ..+|..+.++..|..++++.|++. .+|..+..+ -|+.|.
T Consensus 77 t~~aDlsrNR~-~elp~~~~~f~~Le~liLy~-n~~---r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 77 TVFADLSRNRF-SELPEEACAFVSLESLILYH-NCI---RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred hhhhhcccccc-ccCchHHHHHHHHHHHHHHh-ccc---eecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 34445555433 23444444455555555555 444 455555555555555555554332 233333333 355555
Q ss_pred ccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccccc
Q 011233 267 VEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE 346 (490)
Q Consensus 267 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (490)
+++|+++. +|..++..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..++.+ .|..||++.|++..
T Consensus 150 ~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~ 225 (722)
T KOG0532|consen 150 VSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISY 225 (722)
T ss_pred EecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceee
Confidence 55555554 5555555555555555554432 23334455555555555555422 233334422 45555555555555
Q ss_pred CCccccCCCCCCEEeCcCCCCCCCchhh
Q 011233 347 VPESLGQLSSIVRLDLSNNNLERTPASL 374 (490)
Q Consensus 347 ~p~~~~~l~~L~~L~Ls~n~l~~l~~~l 374 (490)
+|-.|..|+.|++|-|.+|-+++-|..+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCChHHH
Confidence 5555555555555555555555544433
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2e-11 Score=105.42 Aligned_cols=127 Identities=20% Similarity=0.129 Sum_probs=48.8
Q ss_pred CCCCCCCccceeeecccccccc--cc-CCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCc-ccCCCCc
Q 011233 21 LEGVPLTEVRYFEWHQFPLETL--NI-NGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDL-SLARNLE 96 (490)
Q Consensus 21 ~~~~~~~~L~~L~l~~~~l~~l--~~-~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~l~~L~ 96 (490)
+....+.++++|+|++|.++.+ .. .+.+|+.|++++|.|+.+. .+..+++|++|++++|.+....+.+ ..+++|+
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3333566889999999999888 44 5789999999999999884 6778899999999999865533344 3689999
Q ss_pred EEecCCCCCCccc-chhhhccccCcEEEccCCCCCCcCCcc----cc-cCCccEEeecC
Q 011233 97 ILDLGSCSSLTET-HSSIQYLNKLEVLDLRHCESLGSLPTS----IH-SKYIEELDFVG 149 (490)
Q Consensus 97 ~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~~~~~~p~~----~~-l~~L~~L~ls~ 149 (490)
+|++++|.+.... -..++.+++|++|++.+|+.... +.. +. +|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEE
Confidence 9999998876532 25677889999999999985432 331 11 78888887543
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=3.3e-11 Score=120.70 Aligned_cols=196 Identities=27% Similarity=0.416 Sum_probs=124.4
Q ss_pred EEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCC-CCcEEEccCCCCCCccCccccCccccceeEc
Q 011233 189 RLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFK-SLASLEIINCPKLERLPDELGNSKALEELRV 267 (490)
Q Consensus 189 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 267 (490)
.++...+........ +..++.++.|++.+ +.+ ..++......+ +|+.|++++|.+. .+|..+..++.|+.|++
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~-n~i---~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDN-NNI---TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCC-ccc---ccCccccccchhhcccccccccchh-hhhhhhhcccccccccc
Confidence 455555444333222 34446667777766 666 44555444553 6777777775443 33344666777777777
Q ss_pred cCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccC
Q 011233 268 EGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREV 347 (490)
Q Consensus 268 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 347 (490)
++|+++. +|...+..+.|+.|++++|++. .+|.....+..|+.+.+++|+ ....+..+..+.++..+.+.+|++..+
T Consensus 171 ~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 171 SFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred CCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeec
Confidence 7777766 5655556677777777775443 444433445557777777775 223344566777777777777777777
Q ss_pred CccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCcccc
Q 011233 348 PESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKHRL 394 (490)
Q Consensus 348 p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~~l 394 (490)
+..++.++++++|++++|+++.++. +..+.+++.|++++|.+...+
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence 7777777778888888888887765 777778888888887765443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=6.8e-11 Score=118.44 Aligned_cols=84 Identities=30% Similarity=0.327 Sum_probs=39.4
Q ss_pred ccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceee
Q 011233 259 SKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLI 338 (490)
Q Consensus 259 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 338 (490)
...|+++.+++|.+.. .+..+..+.++..+.+.+|... .++..++.+++++.|++++|.+..... ++.+.+++.|+
T Consensus 208 ~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~ 283 (394)
T COG4886 208 LSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELD 283 (394)
T ss_pred hhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEe
Confidence 3334445554443322 3444445555555554443322 223344555555555555555333222 55555555555
Q ss_pred ccCccccc
Q 011233 339 VKGTAIRE 346 (490)
Q Consensus 339 L~~n~l~~ 346 (490)
+++|.+..
T Consensus 284 ~s~n~~~~ 291 (394)
T COG4886 284 LSGNSLSN 291 (394)
T ss_pred ccCccccc
Confidence 55555554
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.7e-12 Score=118.29 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=146.0
Q ss_pred cccccCcEEEeccCCCccccc--ccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccc-cC
Q 011233 182 ECLSKLDRLSIQDCTRLENIS--SSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDEL-GN 258 (490)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~-~~ 258 (490)
.++++|+...+.++... ..+ .....+++++.|+++. |-+.....+-.....+|+|+.|+++.|.+........ ..
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 35677888888775432 222 2456788899999988 7776444444556678899999999887654332211 24
Q ss_pred ccccceeEccCcccccc-chhhHhhccccccccccccccccccCccccCccccceeecccccccccC-CcccCCccccce
Q 011233 259 SKALEELRVEGAAIRER-LPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRL-PNELGNLKCLVV 336 (490)
Q Consensus 259 l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~-~~~~~~l~~L~~ 336 (490)
++.|+.|.++.|.++.. +......+|+|+.|++..|.....-......+..|+.|+|++|.+...- ....+.++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 67889999999888742 2334557789999999988644443344456678899999998866532 234688889999
Q ss_pred eeccCccccc--CCcc-----ccCCCCCCEEeCcCCCCCCCc--hhhhccCCCCEEecCCCCC
Q 011233 337 LIVKGTAIRE--VPES-----LGQLSSIVRLDLSNNNLERTP--ASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 337 L~L~~n~l~~--~p~~-----~~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~ls~n~~ 390 (490)
|+++.+.+.+ .|+. ...+++|++|+++.|++...+ ..+..+++|+.|.+..|.+
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 9999999888 4544 356889999999999987553 3456677888888777775
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1e-11 Score=111.99 Aligned_cols=132 Identities=23% Similarity=0.203 Sum_probs=108.3
Q ss_pred ccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccc
Q 011233 256 LGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLV 335 (490)
Q Consensus 256 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 335 (490)
+.....|+++|+|+|.++. +-++..-.|+++.|+++.|.+...- .+..+++|+.|||++|.+. .+..+-..+.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhh-hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 3345789999999999988 7777888899999999998876542 2678899999999999744 4555566778999
Q ss_pred eeeccCcccccCCccccCCCCCCEEeCcCCCCCCC--chhhhccCCCCEEecCCCCCcc
Q 011233 336 VLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERT--PASLYQLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 336 ~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l--~~~l~~l~~L~~L~ls~n~~~~ 392 (490)
.|.+++|.+.++.. ++.+-+|..||+++|++..+ ...++.+|.|+.+.+.+|++.+
T Consensus 356 tL~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999999888653 57788999999999999966 4578899999999999999754
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=6.7e-11 Score=102.18 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=39.8
Q ss_pred cccccccc--ccCCCCccEEEcCCCCccccccccc-CCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccch
Q 011233 35 HQFPLETL--NINGENLVSLKMPGRKVKQLWNDVR-NLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHS 111 (490)
Q Consensus 35 ~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 111 (490)
..+.++.+ ..++.++++|+|.+|.|+.+. .++ .+.+|+.|++++|.+ ..++.+..+++|++|++++|.+....+.
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHH
T ss_pred ccccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCCCCccccc
Confidence 34445555 566778999999999999884 454 588999999999985 4567888999999999999988765333
Q ss_pred hhhccccCcEEEccCCCCCCcCCc--ccc-cCCccEEeecCCCCC
Q 011233 112 SIQYLNKLEVLDLRHCESLGSLPT--SIH-SKYIEELDFVGCSKL 153 (490)
Q Consensus 112 ~l~~l~~L~~L~Ls~n~~~~~~p~--~~~-l~~L~~L~ls~n~~~ 153 (490)
....+++|++|++++|++. .+.. .+. +++|+.|++.+|+..
T Consensus 83 l~~~lp~L~~L~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred hHHhCCcCCEEECcCCcCC-ChHHhHHHHcCCCcceeeccCCccc
Confidence 2357999999999999843 3332 222 899999999999764
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=1.7e-10 Score=123.80 Aligned_cols=249 Identities=22% Similarity=0.237 Sum_probs=146.7
Q ss_pred cccCCCCCCCccceeeecccc--cccc----ccCCCCccEEEcCCC-CcccccccccCCCCCCEEecCCCCCCCCCC-Cc
Q 011233 18 VSSLEGVPLTEVRYFEWHQFP--LETL----NINGENLVSLKMPGR-KVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DL 89 (490)
Q Consensus 18 ~~~~~~~~~~~L~~L~l~~~~--l~~l----~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~ 89 (490)
...+.....++++.|-+..|. +..+ |..++.|++|||++| .+..+|..++++.+||+|++++..+. .+| .+
T Consensus 536 ~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l 614 (889)
T KOG4658|consen 536 EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL 614 (889)
T ss_pred hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH
Confidence 344444555589999888885 4444 777999999999977 45679999999999999999998855 555 99
Q ss_pred ccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCC--CcCCcccc-cCCccEEeecCCCCCCCCcccccchhhh
Q 011233 90 SLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESL--GSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPL 166 (490)
Q Consensus 90 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~--~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~ 166 (490)
.+++.|.+||+..+.....+|.....+++||+|.+..-... ...-..+. +.+|+.+....... .+-..+..+. .
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~-~ 691 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMT-R 691 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhH-H
Confidence 99999999999998877777888888999999999654311 11111112 55555555543322 0000001111 1
Q ss_pred hh----hhh---ccCCcCCccccccccCcEEEeccCCCcccccccccC------CCCCCEEecccCCCCCCCCCCCcccc
Q 011233 167 LS----LIK---VGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFK------LKSLQYIEIKRCSNLKSLESLPNNLC 233 (490)
Q Consensus 167 L~----~~~---~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~------l~~L~~L~L~~~n~l~~~~~l~~~~~ 233 (490)
|. .+. ......+..+..+.+|+.|.+.+|............ ++++..+.+.+|..... +.+..
T Consensus 692 L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~----l~~~~ 767 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD----LTWLL 767 (889)
T ss_pred HHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc----cchhh
Confidence 11 111 222333455566777777777777665432211111 22333444444433321 11222
Q ss_pred cCCCCcEEEccCCCCCCccCccccCccccceeEccCccccc
Q 011233 234 MFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRE 274 (490)
Q Consensus 234 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~ 274 (490)
..++|+.|.+..|.....+.+....+..+..+.+..+.+.+
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 35566667666666655554444444445444444444443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.6e-11 Score=113.81 Aligned_cols=185 Identities=17% Similarity=0.144 Sum_probs=86.3
Q ss_pred ccCCCCcEEecCCCCCCccc--chhhhccccCcEEEccCCCCCCcCCcccc--cCCccEEeecCCCCCCCCcccccchhh
Q 011233 90 SLARNLEILDLGSCSSLTET--HSSIQYLNKLEVLDLRHCESLGSLPTSIH--SKYIEELDFVGCSKLKNHPAISSSLIP 165 (490)
Q Consensus 90 ~~l~~L~~L~L~~n~~~~~~--~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--l~~L~~L~ls~n~~~~~~~~~~~~~~~ 165 (490)
..+++++.|||++|-+..-. -.-...+++|+.|+++.|.+......... ++.|+.|.++.|.+...
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k---------- 212 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWK---------- 212 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHH----------
Confidence 34555555555554322211 12233455555555555543332222222 55566666666544311
Q ss_pred hhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccC
Q 011233 166 LLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIIN 245 (490)
Q Consensus 166 ~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~ 245 (490)
.+-.....+|+|+.|++..|...........-++.|++|+|++ |.+-+.... ...+.++.|..|.++.
T Consensus 213 ----------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~-~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 213 ----------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQG-YKVGTLPGLNQLNLSS 280 (505)
T ss_pred ----------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccccc-cccccccchhhhhccc
Confidence 0111122445566666666543332223333455566666666 444211111 2345566666666666
Q ss_pred CCCCCc-cCcc-----ccCccccceeEccCccccccch--hhHhhccccccccccccccc
Q 011233 246 CPKLER-LPDE-----LGNSKALEELRVEGAAIRERLP--ESLGQLALLCELKMIKCSSF 297 (490)
Q Consensus 246 n~~~~~-~p~~-----~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~ 297 (490)
|.+... .|+. ....++|++|+++.|++.+ .+ ..+..+++|+.|.+..|.+.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccc
Confidence 554332 2221 2335667777777777643 22 23445566666666655544
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.3e-11 Score=113.76 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=84.6
Q ss_pred ccccccCcEEEeccCCCcccccc----cccCCCCCCEEecccCCCCCCCC--C---------CCcccccCCCCcEEEccC
Q 011233 181 IECLSKLDRLSIQDCTRLENISS----SIFKLKSLQYIEIKRCSNLKSLE--S---------LPNNLCMFKSLASLEIIN 245 (490)
Q Consensus 181 ~~~l~~L~~L~L~~n~~~~~~~~----~~~~l~~L~~L~L~~~n~l~~~~--~---------l~~~~~~l~~L~~L~l~~ 245 (490)
+..+++|+++|||+|.+...-+. -+..+..|++|.|.+| .+...+ . .......-+.|++++...
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34455677777777665433222 2445666777777663 331000 0 001112233455555554
Q ss_pred CCCCCc----cCccccCccccceeEccCccccc----cchhhHhhccccccccccccccccccCccccCccccceeeccc
Q 011233 246 CPKLER----LPDELGNSKALEELRVEGAAIRE----RLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIID 317 (490)
Q Consensus 246 n~~~~~----~p~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 317 (490)
|.+-.. +...|...+.|+.+.++.|.+.. .+...+.++++|+.|++.+|.+...-.
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---------------- 230 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---------------- 230 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----------------
Confidence 433211 12223334455555555544421 112234444555555555444332100
Q ss_pred ccccccCCcccCCccccceeeccCccccc-----CCccc-cCCCCCCEEeCcCCCCC-----CCchhhhccCCCCEEecC
Q 011233 318 CKNFKRLPNELGNLKCLVVLIVKGTAIRE-----VPESL-GQLSSIVRLDLSNNNLE-----RTPASLYQLSSIKYLKLF 386 (490)
Q Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~-~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~ls 386 (490)
..+...++.+++|+.+++++|.+.. +-..+ ...|+|++|.+.+|.++ .+...+...|.|+.|+|+
T Consensus 231 ----~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 231 ----VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred ----HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 0122233444455555555555443 11111 22456666666666665 123334446666666666
Q ss_pred CCCC
Q 011233 387 DNNF 390 (490)
Q Consensus 387 ~n~~ 390 (490)
+|++
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 6665
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=8.4e-10 Score=115.95 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=97.6
Q ss_pred CccEEEcCCCCccc-ccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEcc
Q 011233 48 NLVSLKMPGRKVKQ-LWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLR 125 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 125 (490)
.++.|+|++|.+.+ +|..+..+++|++|+|++|.+.+.+| .++.+++|+.|++++|.+.+.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 48899999999985 78889999999999999999999988 89999999999999999999999999999999999999
Q ss_pred CCCCCCcCCcccc--cCCccEEeecCCCCCCC
Q 011233 126 HCESLGSLPTSIH--SKYIEELDFVGCSKLKN 155 (490)
Q Consensus 126 ~n~~~~~~p~~~~--l~~L~~L~ls~n~~~~~ 155 (490)
+|.+.+.+|..+. ..++..+++.+|.....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 9999999999877 45778899998875544
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=5.1e-11 Score=109.87 Aligned_cols=153 Identities=15% Similarity=0.096 Sum_probs=76.8
Q ss_pred hhccccCcEEEccCCCCCCcCCcccc-----cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccC
Q 011233 113 IQYLNKLEVLDLRHCESLGSLPTSIH-----SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKL 187 (490)
Q Consensus 113 l~~l~~L~~L~Ls~n~~~~~~p~~~~-----l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L 187 (490)
+..+++|++||||+|.+....+..+. +..|++|.+.+|.+...-...+ ...|..+. ..+. .+.-+.|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l---~~al~~l~-~~kk----~~~~~~L 159 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRL---GRALFELA-VNKK----AASKPKL 159 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHH---HHHHHHHH-HHhc----cCCCcce
Confidence 34555667777776665444333332 5667777777665432211111 11122221 0111 2234567
Q ss_pred cEEEeccCCCccc----ccccccCCCCCCEEecccCCCCCCCC--CCCcccccCCCCcEEEccCCCCCCc----cCcccc
Q 011233 188 DRLSIQDCTRLEN----ISSSIFKLKSLQYIEIKRCSNLKSLE--SLPNNLCMFKSLASLEIINCPKLER----LPDELG 257 (490)
Q Consensus 188 ~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~~n~l~~~~--~l~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~ 257 (490)
++++...|++... +...|...+.|+.+.+.. |.+..-+ .+...+.++++|++||+.+|.+... +...+.
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 8887777655321 223355667777777777 6553211 1223455666666666666655432 223344
Q ss_pred CccccceeEccCccccc
Q 011233 258 NSKALEELRVEGAAIRE 274 (490)
Q Consensus 258 ~l~~L~~L~ls~n~l~~ 274 (490)
.+++|++|++++|.+..
T Consensus 239 s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLEN 255 (382)
T ss_pred ccchheeeccccccccc
Confidence 45556666666655543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.8e-10 Score=102.76 Aligned_cols=134 Identities=21% Similarity=0.234 Sum_probs=76.7
Q ss_pred ccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccce
Q 011233 233 CMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTS 312 (490)
Q Consensus 233 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 312 (490)
.....|+++|+++|.+ ..+.++..-.|+++.|++|+|.+.. + ..++.+++|+.||+++|.+.. +..+-..+-+.+.
T Consensus 281 dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccch-hhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence 3344556666666432 2333344445666666666666654 2 235566666666666644432 2222234455666
Q ss_pred eecccccccccCCcccCCccccceeeccCcccccCC--ccccCCCCCCEEeCcCCCCCCCch
Q 011233 313 LAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP--ESLGQLSSIVRLDLSNNNLERTPA 372 (490)
Q Consensus 313 L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~~L~Ls~n~l~~l~~ 372 (490)
|.|++|.+.. + ..+..+.+|..||+++|+|..+. ..++.+|.|+.+.|.+|-+..+|+
T Consensus 357 L~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 357 LKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 6666665322 2 23556667777777777777632 457777888888888887776653
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.94 E-value=1.2e-09 Score=114.73 Aligned_cols=108 Identities=28% Similarity=0.337 Sum_probs=68.3
Q ss_pred cccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccccc-CCccccCCCCCCEEeCcC
Q 011233 286 LCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSN 364 (490)
Q Consensus 286 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~ 364 (490)
++.|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++++ +|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5566666666666666666666666666666666666666666666666666666666665 666666666666666666
Q ss_pred CCCC-CCchhhhc-cCCCCEEecCCCCCccc
Q 011233 365 NNLE-RTPASLYQ-LSSIKYLKLFDNNFKHR 393 (490)
Q Consensus 365 n~l~-~l~~~l~~-l~~L~~L~ls~n~~~~~ 393 (490)
|+++ .+|..+.. ..++..+++.+|+....
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 6666 45655554 23555666666654433
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=7.3e-11 Score=115.20 Aligned_cols=166 Identities=29% Similarity=0.473 Sum_probs=87.4
Q ss_pred ccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCc
Q 011233 172 VGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLER 251 (490)
Q Consensus 172 ~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~ 251 (490)
+....+|..+..+-.|+.+.+..|.+ ..+|..+.++..|++++++. |++ ..+|..++.++ |+.|.+++| ..+.
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~-Nql---S~lp~~lC~lp-Lkvli~sNN-kl~~ 157 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSS-NQL---SHLPDGLCDLP-LKVLIVSNN-KLTS 157 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhcc-chh---hcCChhhhcCc-ceeEEEecC-cccc
Confidence 44555555555555555555555432 33455555555555555555 555 45555555443 555555553 3344
Q ss_pred cCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCc
Q 011233 252 LPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNL 331 (490)
Q Consensus 252 ~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l 331 (490)
+|+.++....|..||.+.|.+.. +|..++.+.+|+.|.+..|.+. .+|..+..+ .|..||++.|+ ...+|-.|..+
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk-is~iPv~fr~m 233 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK-ISYLPVDFRKM 233 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc-eeecchhhhhh
Confidence 55555555555555665555554 5555555555665555554433 233334433 35555555555 33445555555
Q ss_pred cccceeeccCcccccCC
Q 011233 332 KCLVVLIVKGTAIREVP 348 (490)
Q Consensus 332 ~~L~~L~L~~n~l~~~p 348 (490)
..|++|-|.+|.+..-|
T Consensus 234 ~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 234 RHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhheeeeeccCCCCCCh
Confidence 56666666666555533
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.6e-09 Score=76.91 Aligned_cols=57 Identities=37% Similarity=0.617 Sum_probs=35.9
Q ss_pred ccceeeccCcccccCC-ccccCCCCCCEEeCcCCCCCCC-chhhhccCCCCEEecCCCC
Q 011233 333 CLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLERT-PASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 333 ~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n~ 389 (490)
+|++|++++|+++.+| +.|..+++|++|++++|+++.+ |..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4666666666666655 4566666666666666666665 3455666666666666665
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.3e-09 Score=109.60 Aligned_cols=264 Identities=19% Similarity=0.117 Sum_probs=130.0
Q ss_pred CCccceeeecccccccc--c-cCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCC
Q 011233 26 LTEVRYFEWHQFPLETL--N-INGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGS 102 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l--~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~ 102 (490)
.+..+..+...+.+... . ..+..++.+.+..|.+..+-..+..+.+|+.|++.+|.+......+..+++|++|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF 127 (414)
T ss_pred cchhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc
Confidence 44555555555544433 2 24566666666666666644445666677777777666433222266677777777777
Q ss_pred CCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccc
Q 011233 103 CSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIE 182 (490)
Q Consensus 103 n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~ 182 (490)
|.+....+ +..++.|+.|++++|. +..+...-.++.|+.+++++|.+...-+. . ..
T Consensus 128 N~I~~i~~--l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~--------------------~-~~ 183 (414)
T KOG0531|consen 128 NKITKLEG--LSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIEND--------------------E-LS 183 (414)
T ss_pred cccccccc--hhhccchhhheeccCc-chhccCCccchhhhcccCCcchhhhhhhh--------------------h-hh
Confidence 66555432 4455557777777765 33333333366677777777654332110 0 12
Q ss_pred ccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCC--CCcEEEccCCCCCCccCccccCcc
Q 011233 183 CLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFK--SLASLEIINCPKLERLPDELGNSK 260 (490)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~--~L~~L~l~~n~~~~~~p~~~~~l~ 260 (490)
.+.+++.+++.+|.+.... .+..+..+..+++.. |.++.+..++. +. .|+.+++++|.+.. .+..+..+.
T Consensus 184 ~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~-n~i~~~~~l~~----~~~~~L~~l~l~~n~i~~-~~~~~~~~~ 255 (414)
T KOG0531|consen 184 ELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLD-NKISKLEGLNE----LVMLHLRELYLSGNRISR-SPEGLENLK 255 (414)
T ss_pred hccchHHHhccCCchhccc--chHHHHHHHHhhccc-ccceeccCccc----chhHHHHHHhcccCcccc-ccccccccc
Confidence 3445555555554443221 122222333334444 44432222111 11 25555665544332 113344456
Q ss_pred ccceeEccCccccccchhhHhhccccccccccccccccc---cCcc-ccCccccceeeccccccccc
Q 011233 261 ALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFES---LPSS-LCMLKYLTSLAIIDCKNFKR 323 (490)
Q Consensus 261 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~-~~~l~~L~~L~Ls~n~~~~~ 323 (490)
.+..+++.+|++... ..+...+.+..+....+..... .... .+..+.++...+..|.....
T Consensus 256 ~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 256 NLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 666666666665541 1233334444444444443311 1111 34445666666666654443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.1e-08 Score=72.56 Aligned_cols=60 Identities=32% Similarity=0.453 Sum_probs=47.3
Q ss_pred cccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCCCCCEEeCcCCCC
Q 011233 308 KYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNL 367 (490)
Q Consensus 308 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l 367 (490)
++|++|++++|++....+.+|.++++|++|++++|.++.++ ..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46788888888777666677888888888888888888855 6778888888888888864
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=4e-09 Score=105.97 Aligned_cols=242 Identities=23% Similarity=0.236 Sum_probs=154.3
Q ss_pred CCccceeeecccccccc---ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCC
Q 011233 26 LTEVRYFEWHQFPLETL---NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGS 102 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~ 102 (490)
+..++.+.+..|.+..+ ...+++++.|++.+|.|..+...+..+++|++|++++|. ++.+..+..++.|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheecc
Confidence 45666666777777764 667788888888888888886557788888889998887 45566677777788888888
Q ss_pred CCCCcccchhhhccccCcEEEccCCCCCCcCCc--ccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcc
Q 011233 103 CSSLTETHSSIQYLNKLEVLDLRHCESLGSLPT--SIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSS 180 (490)
Q Consensus 103 n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~ 180 (490)
|.+... ..+..++.|+.+++++|. ...+.. .-.+.+++.+++++|.+..............+....+.+..+-.
T Consensus 150 N~i~~~--~~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~- 225 (414)
T KOG0531|consen 150 NLISDI--SGLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG- 225 (414)
T ss_pred Ccchhc--cCCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC-
Confidence 876543 334557888888888887 444444 23378888888888866544332222211122222233333321
Q ss_pred ccccc--cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCc---cCcc
Q 011233 181 IECLS--KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLER---LPDE 255 (490)
Q Consensus 181 ~~~l~--~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~---~p~~ 255 (490)
+..+. .|+.+++++|.+... +..+..+..+..+++.+ +.+..... +...+.+..+....+.+... ....
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~-n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSS-NRISNLEG----LERLPKLSELWLNDNKLALSEAISQEY 299 (414)
T ss_pred cccchhHHHHHHhcccCccccc-cccccccccccccchhh-cccccccc----ccccchHHHhccCcchhcchhhhhccc
Confidence 12222 378889998776543 24466788888999988 77753322 23345555555555554422 1111
Q ss_pred -ccCccccceeEccCccccccchh
Q 011233 256 -LGNSKALEELRVEGAAIRERLPE 278 (490)
Q Consensus 256 -~~~l~~L~~L~ls~n~l~~~~~~ 278 (490)
....+.+....+..|......+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 300 ITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccccccccCcccccccc
Confidence 44567888888888887764443
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1e-09 Score=99.12 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=49.5
Q ss_pred CccEEEcCCCCccc--ccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccc--hhhhccccCcEE
Q 011233 48 NLVSLKMPGRKVKQ--LWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETH--SSIQYLNKLEVL 122 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L 122 (490)
.|++||||...|+. +-.-++.|.+|+.|.+.++++...+- .+..-.+|+.|+++.|.-..... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35556665555542 22334455555555555555443333 45555556666666554333211 224455566666
Q ss_pred EccCCCCCCcCCcc-cc--cCCccEEeecCC
Q 011233 123 DLRHCESLGSLPTS-IH--SKYIEELDFVGC 150 (490)
Q Consensus 123 ~Ls~n~~~~~~p~~-~~--l~~L~~L~ls~n 150 (490)
+++.|......-.. +. -++|+.|+++|+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 66655433222111 11 445555555554
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.53 E-value=4.1e-09 Score=99.58 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=44.4
Q ss_pred CCCEEecCCCCCCCCCC---CcccCCCCcEEecCCCCCCcccc-hhh-hccccCcEEEccCCCCCCcCC-cccc--cCCc
Q 011233 71 NLKYIDLSHSESLTKLP---DLSLARNLEILDLGSCSSLTETH-SSI-QYLNKLEVLDLRHCESLGSLP-TSIH--SKYI 142 (490)
Q Consensus 71 ~L~~L~Ls~n~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~-~~l-~~l~~L~~L~Ls~n~~~~~~p-~~~~--l~~L 142 (490)
.|+.|.++++.-.+.-+ .-..++++++|++.+|...+... ..+ ..+.+|+++++..|..++... +.+. +++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56666777665444333 23466777777777765333211 122 356677777776654333221 1122 6677
Q ss_pred cEEeecCCCC
Q 011233 143 EELDFVGCSK 152 (490)
Q Consensus 143 ~~L~ls~n~~ 152 (490)
++|+++.|..
T Consensus 219 ~~lNlSwc~q 228 (483)
T KOG4341|consen 219 KYLNLSWCPQ 228 (483)
T ss_pred HHhhhccCch
Confidence 7777776643
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.6e-09 Score=96.59 Aligned_cols=158 Identities=22% Similarity=0.302 Sum_probs=93.1
Q ss_pred ccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCc-cccC-
Q 011233 181 IECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPD-ELGN- 258 (490)
Q Consensus 181 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~- 258 (490)
+..+.+|+.|.+.++.+...+...++.-.+|+.|+++.|+.++. -.+.-.+.+++.|..|+++.|......-. .+..
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE-NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch-hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 45677888888888877777777777778888888888877753 12233456778888888888765543221 1111
Q ss_pred ccccceeEccCccc---cccchhhHhhccccccccccccccccc-cCccccCccccceeecccccccccCCccc---CCc
Q 011233 259 SKALEELRVEGAAI---RERLPESLGQLALLCELKMIKCSSFES-LPSSLCMLKYLTSLAIIDCKNFKRLPNEL---GNL 331 (490)
Q Consensus 259 l~~L~~L~ls~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~l 331 (490)
-++|+.|++++..- ...+..-...+++|.+||+++|..... .-..+..++.|++|.++.|. +.+|..+ ...
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~ 362 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSK 362 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccC
Confidence 25677777776431 122233344667777777777654332 22334555666666666663 3334322 333
Q ss_pred cccceeeccC
Q 011233 332 KCLVVLIVKG 341 (490)
Q Consensus 332 ~~L~~L~L~~ 341 (490)
|+|.+|++.+
T Consensus 363 psl~yLdv~g 372 (419)
T KOG2120|consen 363 PSLVYLDVFG 372 (419)
T ss_pred cceEEEEecc
Confidence 4444444444
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=3.1e-09 Score=106.74 Aligned_cols=192 Identities=21% Similarity=0.193 Sum_probs=120.0
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc--c-cCCCCccEEEcCCCCccccc-------ccccC--
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL--N-INGENLVSLKMPGRKVKQLW-------NDVRN-- 68 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l--~-~~~~~L~~L~Ls~n~i~~l~-------~~~~~-- 68 (490)
+++++|.+.......... |-.+ +..+||+|.+.+|.+... + .--..|++|...+ .+.++- ..+.+
T Consensus 84 qkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred hhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch
Confidence 345555555533222222 4445 899999999999987655 1 2123466665543 233221 11111
Q ss_pred -CCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEe
Q 011233 69 -LVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELD 146 (490)
Q Consensus 69 -l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ 146 (490)
.-.|.+.+.++|.+...-..+.-++.|+.|||++|++.... .+..|++|++|||++|. ...+|..-. --.|+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeee
Confidence 23677788888875543347778889999999998877654 68889999999999987 555565433 23388888
Q ss_pred ecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccccc-ccccCCCCCCEEecccCCCC
Q 011233 147 FVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENIS-SSIFKLKSLQYIEIKRCSNL 222 (490)
Q Consensus 147 ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~~n~l 222 (490)
+++|.... + ..+.++++|+.||+++|-+.+.-. ..+..+..|+.|+|.+ |-+
T Consensus 239 lrnN~l~t---------------L--------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeG-NPl 291 (1096)
T KOG1859|consen 239 LRNNALTT---------------L--------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEG-NPL 291 (1096)
T ss_pred ecccHHHh---------------h--------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcC-Ccc
Confidence 88874321 1 135677888888888876554321 1244566677777777 443
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=7.3e-09 Score=97.94 Aligned_cols=232 Identities=22% Similarity=0.265 Sum_probs=123.3
Q ss_pred CCccEEEcCCCCcccc---cccccCCCCCCEEecCCCCCCCCCC--Cc-ccCCCCcEEecCCCCCCccc-ch-hhhcccc
Q 011233 47 ENLVSLKMPGRKVKQL---WNDVRNLVNLKYIDLSHSESLTKLP--DL-SLARNLEILDLGSCSSLTET-HS-SIQYLNK 118 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l---~~~~~~l~~L~~L~Ls~n~~~~~~~--~~-~~l~~L~~L~L~~n~~~~~~-~~-~l~~l~~ 118 (490)
..|+.|.+.++.-.+. -..-.++++++.|++.+|..++... .+ ..+++|++|++..|...... -. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4678888887754432 2444678999999999887555433 23 47889999999987544432 22 3347899
Q ss_pred CcEEEccCCCCCCcC--Cccc-ccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccC
Q 011233 119 LEVLDLRHCESLGSL--PTSI-HSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDC 195 (490)
Q Consensus 119 L~~L~Ls~n~~~~~~--p~~~-~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n 195 (490)
|++++++.|..+..- -... ++..++.+...||...+.- .+... -+...-+..+++.+|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le---------~l~~~----------~~~~~~i~~lnl~~c 278 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE---------ALLKA----------AAYCLEILKLNLQHC 278 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH---------HHHHH----------hccChHhhccchhhh
Confidence 999999998755431 1111 1455666655555322110 01100 012233445555555
Q ss_pred CCccccccc--ccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccC--ccccCccccceeEccCcc
Q 011233 196 TRLENISSS--IFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLP--DELGNSKALEELRVEGAA 271 (490)
Q Consensus 196 ~~~~~~~~~--~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~ls~n~ 271 (490)
........+ -..+..|+.++.++|+.+++ ..+..--.+.++|+++.++.|+..+..- .--.+++.|+.+++..+.
T Consensus 279 ~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d-~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 279 NQLTDEDLWLIACGCHALQVLCYSSCTDITD-EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred ccccchHHHHHhhhhhHhhhhcccCCCCCch-HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 444332211 22456677777777766542 1111112345677777777765433211 111335566666666544
Q ss_pred ccc--cchhhHhhcccccccccccccccc
Q 011233 272 IRE--RLPESLGQLALLCELKMIKCSSFE 298 (490)
Q Consensus 272 l~~--~~~~~~~~l~~L~~L~l~~n~~~~ 298 (490)
..- .+...-.+++.|+++.+++|...+
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhh
Confidence 321 111112245566666666655543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=3.2e-08 Score=99.68 Aligned_cols=178 Identities=23% Similarity=0.193 Sum_probs=118.9
Q ss_pred cccccCCCCCCEEecccCCCCCCCCCCCcccccC-CCCcEEEccCC---------CCCCccCccccCccccceeEccCcc
Q 011233 202 SSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMF-KSLASLEIINC---------PKLERLPDELGNSKALEELRVEGAA 271 (490)
Q Consensus 202 ~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l-~~L~~L~l~~n---------~~~~~~p~~~~~l~~L~~L~ls~n~ 271 (490)
|-.+..+.+|+.|.+.+|+--+. ..+..+ ..|++|.-.+- .-.+.+..++. ..+|.+.+.++|.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-----~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-----KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNR 175 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-----hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhh
Confidence 44577788888888888643221 111111 12333322110 01122222211 3468888889999
Q ss_pred ccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccc
Q 011233 272 IRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESL 351 (490)
Q Consensus 272 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~ 351 (490)
+.. +-.+++-++.|+.|++++|++...- .+..++.|++|||+.|.+....-....++. |+.|.+++|.++.+-+ +
T Consensus 176 L~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~g-i 250 (1096)
T KOG1859|consen 176 LVL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRG-I 250 (1096)
T ss_pred HHh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhh-H
Confidence 876 6667888899999999998876543 567788999999999985443322334444 9999999999888653 5
Q ss_pred cCCCCCCEEeCcCCCCCCC--chhhhccCCCCEEecCCCCC
Q 011233 352 GQLSSIVRLDLSNNNLERT--PASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 352 ~~l~~L~~L~Ls~n~l~~l--~~~l~~l~~L~~L~ls~n~~ 390 (490)
.++.+|+.||+++|-+... -..+..+..|+.|.|.+|++
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7789999999999988743 12466788899999999985
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=3.4e-07 Score=83.15 Aligned_cols=184 Identities=14% Similarity=0.127 Sum_probs=107.8
Q ss_pred CCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccc-hhhHhhccc
Q 011233 207 KLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERL-PESLGQLAL 285 (490)
Q Consensus 207 ~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~ 285 (490)
..+.++++|+.+ |.+++...+...+.++|.|++|+++.|++...+...-....+|++|-+.+..+...- -..+..+|.
T Consensus 69 ~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred Hhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456778888888 777654445555667888888888888776544332234667888888877765422 234567788
Q ss_pred cccccccccccccccC--ccccCc-cccceeecccccccc--cCCcccCCccccceeeccCcccccCC--ccccCCCCCC
Q 011233 286 LCELKMIKCSSFESLP--SSLCML-KYLTSLAIIDCKNFK--RLPNELGNLKCLVVLIVKGTAIREVP--ESLGQLSSIV 358 (490)
Q Consensus 286 L~~L~l~~n~~~~~~~--~~~~~l-~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~ 358 (490)
+++|+++.|+.....- ...... +.+++++...|.... ....--.-++++..+-+..|.+.+.. ..+..+|.+-
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 8888888874432210 111111 244444444442211 00000112345666777777766633 3445566677
Q ss_pred EEeCcCCCCCCC--chhhhccCCCCEEecCCCCCc
Q 011233 359 RLDLSNNNLERT--PASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 359 ~L~Ls~n~l~~l--~~~l~~l~~L~~L~ls~n~~~ 391 (490)
.|+|+.|++.+. -+.+..+++|..|.++++++.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777777777743 345667777777777777753
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=7.6e-07 Score=80.91 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=129.3
Q ss_pred ccceeeecccccccc------ccCCCCccEEEcCCCCccc---ccccccCCCCCCEEecCCCCCCCCCCCc-ccCCCCcE
Q 011233 28 EVRYFEWHQFPLETL------NINGENLVSLKMPGRKVKQ---LWNDVRNLVNLKYIDLSHSESLTKLPDL-SLARNLEI 97 (490)
Q Consensus 28 ~L~~L~l~~~~l~~l------~~~~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~l~~L~~ 97 (490)
-+..|-+.++.+... -..+.+++.+||.+|.|.. +-+-+.++|+|++|+++.|.+...+... ..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 334556677776655 4567899999999999874 4455688999999999999877666544 46778899
Q ss_pred EecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcCC--cccc--cCCccEEeecCCCCCCCCcccccchhhhhhhhhc
Q 011233 98 LDLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSLP--TSIH--SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKV 172 (490)
Q Consensus 98 L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p--~~~~--l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~ 172 (490)
|-|.+..+.- .....+..++.++.|.+|.|.+-...- .... -+.+++++..+|. ...+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~----------------~~~w~ 189 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL----------------EQLWL 189 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcH----------------HHHHH
Confidence 9888755432 233556678888888888774211000 0000 2334444444432 11111
Q ss_pred cCCcCCccccccccCcEEEeccCCCcccc-cccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCc
Q 011233 173 GIKELPSSIECLSKLDRLSIQDCTRLENI-SSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLER 251 (490)
Q Consensus 173 ~~~~lp~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~ 251 (490)
....+ -..++++..+-+..|.+...- -..+..++.+.-|+++. +++.+. .--+++..+++|..|.++++.+...
T Consensus 190 ~~~~l---~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idsw-asvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 190 NKNKL---SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSW-ASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHHhH---HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccH-HHHHHHcCCchhheeeccCCccccc
Confidence 11111 123456666666666543322 23355666777778877 666432 2224566778888888888776544
Q ss_pred cCc------cccCccccceeEcc
Q 011233 252 LPD------ELGNSKALEELRVE 268 (490)
Q Consensus 252 ~p~------~~~~l~~L~~L~ls 268 (490)
+.. -++.+++++.|+=+
T Consensus 265 l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 265 LRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCcceEEEEeeccceEEecCc
Confidence 321 24456666665543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=8.7e-07 Score=57.66 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=15.9
Q ss_pred ccceeeccCcccccCCccccCCCCCCEEeCcCCCCCC
Q 011233 333 CLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLER 369 (490)
Q Consensus 333 ~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~ 369 (490)
+|++|++++|+|+++|+.++.+++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444444444444444434444444444444444443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.12 E-value=2e-07 Score=74.98 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=78.0
Q ss_pred cccccccccccccc--ccCccccCccccceeecccccccccCCccc-CCccccceeeccCcccccCCccccCCCCCCEEe
Q 011233 285 LLCELKMIKCSSFE--SLPSSLCMLKYLTSLAIIDCKNFKRLPNEL-GNLKCLVVLIVKGTAIREVPESLGQLSSIVRLD 361 (490)
Q Consensus 285 ~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~ 361 (490)
.+..+++++|.+.. ..+..+.....|...+|++|.+. .+|..| ..++.++.+++++|.++++|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 45556666665432 12222333456777888888744 445545 455689999999999999998899999999999
Q ss_pred CcCCCCCCCchhhhccCCCCEEecCCCCC
Q 011233 362 LSNNNLERTPASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 362 Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~ 390 (490)
++.|.+...|..+..+.++-.|+..+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCcc
Confidence 99999999988888899999999888874
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.01 E-value=7.9e-06 Score=79.54 Aligned_cols=135 Identities=24% Similarity=0.321 Sum_probs=83.8
Q ss_pred cccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccc
Q 011233 232 LCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLT 311 (490)
Q Consensus 232 ~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 311 (490)
+..++.++.|++++| ....+|. -.++|++|.++++.--..+|..+ .++|+.|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 345688999999998 4555663 13469999998743323367655 36899999999866555664 567
Q ss_pred eeecccccc--cccCCcccCCccccceeeccCcc-cc--cCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecC
Q 011233 312 SLAIIDCKN--FKRLPNELGNLKCLVVLIVKGTA-IR--EVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLF 386 (490)
Q Consensus 312 ~L~Ls~n~~--~~~~~~~~~~l~~L~~L~L~~n~-l~--~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls 386 (490)
.|+++.+.. .+.+|. +|+.|.+.+++ .. .+|.. -.++|++|++++|....+|+.+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEec
Confidence 777765543 233443 56666664422 11 12211 12568888888777665554443 477777776
Q ss_pred CC
Q 011233 387 DN 388 (490)
Q Consensus 387 ~n 388 (490)
.|
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 65
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=1.2e-06 Score=92.28 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=34.9
Q ss_pred CCCccceeeeccccccc-----cccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCC--CCcccCCCCcE
Q 011233 25 PLTEVRYFEWHQFPLET-----LNINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKL--PDLSLARNLEI 97 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~-----l~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~--~~~~~l~~L~~ 97 (490)
.+|+|+.|.+.+-.+.. ++.++++|..||+|+.+++.+ .+++++++|+.|.+.+-.+.... .++.++++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 44555555554433211 144455555555555555544 44445555555555443332211 13444555555
Q ss_pred EecCC
Q 011233 98 LDLGS 102 (490)
Q Consensus 98 L~L~~ 102 (490)
||+|.
T Consensus 225 LDIS~ 229 (699)
T KOG3665|consen 225 LDISR 229 (699)
T ss_pred eeccc
Confidence 55554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=7.4e-06 Score=53.28 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=27.5
Q ss_pred CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCC
Q 011233 47 ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESL 83 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~ 83 (490)
++|++|++++|+|+.+|+.+++|++|++|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4678888888888888777888888888888888743
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.6e-05 Score=75.95 Aligned_cols=136 Identities=26% Similarity=0.484 Sum_probs=77.6
Q ss_pred cccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccc
Q 011233 182 ECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKA 261 (490)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 261 (490)
..+.+++.|++++|.+ ..+|. -..+|++|.+++|+.+ ..+|+.+ .++|+.|++++|.....+|. .
T Consensus 49 ~~~~~l~~L~Is~c~L-~sLP~---LP~sLtsL~Lsnc~nL---tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDI-ESLPV---LPNELTEITIENCNNL---TTLPGSI--PEGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHhcCCCEEEeCCCCC-cccCC---CCCCCcEEEccCCCCc---ccCCchh--hhhhhheEccCccccccccc------c
Confidence 3467888999998844 34452 2346889999888887 5566544 35788888888755555554 4
Q ss_pred cceeEccCccccc--cchhhHhhccccccccccccccc--cccCccccCccccceeecccccccccCCcccCCcccccee
Q 011233 262 LEELRVEGAAIRE--RLPESLGQLALLCELKMIKCSSF--ESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVL 337 (490)
Q Consensus 262 L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 337 (490)
|+.|+++.+.... .+|. +|+.|.+.+++.. ..+|. .-.++|++|++++|.... .|..+. .+|+.|
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L 182 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKLP--ESLQSI 182 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cccccc--ccCcEE
Confidence 6666676554322 1332 4556665432211 01111 112467777777766432 333222 366667
Q ss_pred eccCcc
Q 011233 338 IVKGTA 343 (490)
Q Consensus 338 ~L~~n~ 343 (490)
+++.+.
T Consensus 183 ~ls~n~ 188 (426)
T PRK15386 183 TLHIEQ 188 (426)
T ss_pred Eecccc
Confidence 766553
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=5.3e-07 Score=72.56 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=70.2
Q ss_pred cceeEccCccccccchhhHh---hccccccccccccccccccCccc-cCccccceeecccccccccCCcccCCcccccee
Q 011233 262 LEELRVEGAAIRERLPESLG---QLALLCELKMIKCSSFESLPSSL-CMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVL 337 (490)
Q Consensus 262 L~~L~ls~n~l~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 337 (490)
+..++++++.+.. +++... ....|...++++|.+. .+|..| ...+.++.|++++|.+ ..+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhc
Confidence 4445555555433 333222 2234444555554433 223222 2334566666666663 3455557777777777
Q ss_pred eccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCC
Q 011233 338 IVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 338 ~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~ 390 (490)
+++.|.+...|..+..+.++..|+..+|....+|-.+..-+..-..++.++++
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl 158 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPL 158 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcc
Confidence 77777777777666667777777777777777764443333333344455554
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=3e-06 Score=76.18 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=87.8
Q ss_pred ccccCCCCCCEEecCCCCCCCCCC-----CcccCCCCcEEecCCCCCCcc----cc-------hhhhccccCcEEEccCC
Q 011233 64 NDVRNLVNLKYIDLSHSESLTKLP-----DLSLARNLEILDLGSCSSLTE----TH-------SSIQYLNKLEVLDLRHC 127 (490)
Q Consensus 64 ~~~~~l~~L~~L~Ls~n~~~~~~~-----~~~~l~~L~~L~L~~n~~~~~----~~-------~~l~~l~~L~~L~Ls~n 127 (490)
+.+..+..+..+|||+|.+.+.-. .+.+-++|+..+++. -+++. ++ .++-+|++|+..+||+|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 333445566666666666443311 234555666666665 23332 22 34457788888888888
Q ss_pred CCCCcCCcccc-----cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccc-
Q 011233 128 ESLGSLPTSIH-----SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENI- 201 (490)
Q Consensus 128 ~~~~~~p~~~~-----l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~- 201 (490)
.+....|+.+. -+.|++|.+++|.+--.-...++ +.|..+... .-.+.-|.|++.+...|++..--
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig---kal~~la~n-----KKaa~kp~Le~vicgrNRlengs~ 174 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG---KALFHLAYN-----KKAADKPKLEVVICGRNRLENGSK 174 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH---HHHHHHHHH-----hhhccCCCceEEEeccchhccCcH
Confidence 87766666554 57788888888754321111111 112211100 01223456777777776553211
Q ss_pred ---cccccCCCCCCEEecccCCCCCCCCC---CCcccccCCCCcEEEccCCCC
Q 011233 202 ---SSSIFKLKSLQYIEIKRCSNLKSLES---LPNNLCMFKSLASLEIINCPK 248 (490)
Q Consensus 202 ---~~~~~~l~~L~~L~L~~~n~l~~~~~---l~~~~~~l~~L~~L~l~~n~~ 248 (490)
...+..-..|+.+.+.. |.+..-+. +-..+..+.+|+.||+.+|.+
T Consensus 175 ~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred HHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 11122334666777766 55531000 001223445555555555544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.8e-05 Score=68.21 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcc-cCCCCcEEecCCCCCCccc-chhhhccccCcEEEc
Q 011233 47 ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLS-LARNLEILDLGSCSSLTET-HSSIQYLNKLEVLDL 124 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L 124 (490)
.....+||++|.+..+ ..|..++.|.+|.+..|++...-|.+. -+++|..|.+.+|.+.... -.-+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3445556666655544 234455556666666555444444333 3445666666665543321 123445566666666
Q ss_pred cCCCCCCcCCc----ccc-cCCccEEeecC
Q 011233 125 RHCESLGSLPT----SIH-SKYIEELDFVG 149 (490)
Q Consensus 125 s~n~~~~~~p~----~~~-l~~L~~L~ls~ 149 (490)
-+|+.. .-.. .+. +++|+.||+.+
T Consensus 121 l~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchh-cccCceeEEEEecCcceEeehhh
Confidence 555522 1111 111 56666666654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=5.2e-06 Score=87.51 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=92.3
Q ss_pred Cccceeeecccccc------ccccCCCCccEEEcCCCCccc--ccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEE
Q 011233 27 TEVRYFEWHQFPLE------TLNINGENLVSLKMPGRKVKQ--LWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEIL 98 (490)
Q Consensus 27 ~~L~~L~l~~~~l~------~l~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L 98 (490)
.+|++|++++...- .+...+|.|++|.+++..+.. +..-..++++|..||+|+.+ .+.+..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 46778887775422 226678999999999987754 34556789999999999987 3444678899999999
Q ss_pred ecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcC--Cc-----ccccCCccEEeecCCCCCCC
Q 011233 99 DLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSL--PT-----SIHSKYIEELDFVGCSKLKN 155 (490)
Q Consensus 99 ~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~--p~-----~~~l~~L~~L~ls~n~~~~~ 155 (490)
.+.+-.+.. ..-..+.++++|++||+|..+..... .. ...+|+|+.||.|+....+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 998865544 23356778999999999986533321 11 11189999999998765443
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.81 E-value=1.2e-05 Score=72.47 Aligned_cols=137 Identities=17% Similarity=0.113 Sum_probs=72.2
Q ss_pred CCCCcEEEccCCCCCCcc----CccccCccccceeEccCcccccc-----chhhHhhccccccccccccccccc----cC
Q 011233 235 FKSLASLEIINCPKLERL----PDELGNSKALEELRVEGAAIRER-----LPESLGQLALLCELKMIKCSSFES----LP 301 (490)
Q Consensus 235 l~~L~~L~l~~n~~~~~~----p~~~~~l~~L~~L~ls~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~ 301 (490)
-|.|++.+...|++.... ...+..-..|+++.+..|.|.-. .-..+..+.+|+.|++.+|.++.. +.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 345666666655432211 11122224566666666655321 011233456677777777655432 22
Q ss_pred ccccCccccceeecccccccccCCc----cc--CCccccceeeccCccccc--C-----Cc-cccCCCCCCEEeCcCCCC
Q 011233 302 SSLCMLKYLTSLAIIDCKNFKRLPN----EL--GNLKCLVVLIVKGTAIRE--V-----PE-SLGQLSSIVRLDLSNNNL 367 (490)
Q Consensus 302 ~~~~~l~~L~~L~Ls~n~~~~~~~~----~~--~~l~~L~~L~L~~n~l~~--~-----p~-~~~~l~~L~~L~Ls~n~l 367 (490)
..++..+.|+.|.+.+|-+...-.. .| ...++|..|-..+|.+.+ + |. .-..+|-|..|.+.+|++
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 2334456677777777755433222 12 233667777777776655 1 11 114577788888888888
Q ss_pred CCCc
Q 011233 368 ERTP 371 (490)
Q Consensus 368 ~~l~ 371 (490)
....
T Consensus 316 ~E~~ 319 (388)
T COG5238 316 KELA 319 (388)
T ss_pred hhHH
Confidence 8554
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=7.2e-05 Score=64.62 Aligned_cols=128 Identities=23% Similarity=0.201 Sum_probs=90.2
Q ss_pred ccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCC
Q 011233 49 LVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCE 128 (490)
Q Consensus 49 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 128 (490)
=+.++|.+..+..+..--.-+.....+||++|. ....+.|..++.|..|.+++|.++...|.--..+++|++|.+.+|+
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 345566665554442211224577889999998 5567788899999999999999998888777778999999999987
Q ss_pred CC--CcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccC
Q 011233 129 SL--GSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDC 195 (490)
Q Consensus 129 ~~--~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n 195 (490)
+. +.+-+...++.|++|.+-+|+....-.-. + -.+..+++|+.||...-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR-------~-----------yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR-------L-----------YVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCce-------e-----------EEEEecCcceEeehhhh
Confidence 42 34444444899999999888654331100 0 12457889999998764
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=4.3e-06 Score=75.45 Aligned_cols=97 Identities=20% Similarity=0.143 Sum_probs=63.4
Q ss_pred CCccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCC--CCcccCCCCcEEecC
Q 011233 26 LTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKL--PDLSLARNLEILDLG 101 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~--~~~~~l~~L~~L~L~ 101 (490)
+.+.+.|++-+|.+.+| +..++.|++|.||-|.|+.+ +.+..|++|+.|+|..|.+...- .-+.++|+|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 55667777777777777 77777788888887777776 45667777777777777643221 134566777777777
Q ss_pred CCCCCcccc-----hhhhccccCcEEE
Q 011233 102 SCSSLTETH-----SSIQYLNKLEVLD 123 (490)
Q Consensus 102 ~n~~~~~~~-----~~l~~l~~L~~L~ 123 (490)
.|.-.+.-+ ..+.-+++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 665554433 2344566666664
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.00013 Score=65.79 Aligned_cols=105 Identities=23% Similarity=0.220 Sum_probs=58.9
Q ss_pred ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCC--CCCCCCC-CcccCCCCcEEecCCCCCCcc-cchhhhcccc
Q 011233 43 NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHS--ESLTKLP-DLSLARNLEILDLGSCSSLTE-THSSIQYLNK 118 (490)
Q Consensus 43 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n--~~~~~~~-~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~ 118 (490)
......|+.|++.+.+++.+ ..+..+++|++|++|.| ...+.++ -...+++|++|++++|++... --..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 44556666666666666554 34456677777777777 3333343 334557777777777765431 1123456667
Q ss_pred CcEEEccCCCCCCcCCc---ccc--cCCccEEeecC
Q 011233 119 LEVLDLRHCESLGSLPT---SIH--SKYIEELDFVG 149 (490)
Q Consensus 119 L~~L~Ls~n~~~~~~p~---~~~--l~~L~~L~ls~ 149 (490)
|..||+.+|.-.. +-. ..+ +++|++|+-..
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence 7777777765332 211 111 66666665443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.00016 Score=65.21 Aligned_cols=104 Identities=24% Similarity=0.249 Sum_probs=62.0
Q ss_pred ccccccccccccccccccCccccCccccceeecccc--cccccCCcccCCccccceeeccCcccccCC--ccccCCCCCC
Q 011233 283 LALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDC--KNFKRLPNELGNLKCLVVLIVKGTAIREVP--ESLGQLSSIV 358 (490)
Q Consensus 283 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~ 358 (490)
...|+.+++.++.+++. ..+..+++|++|.++.| +..+.++.-...+++|+++++++|++..+. .....+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34455555555444332 12345567777777777 545544444455577888888887776522 2345667777
Q ss_pred EEeCcCCCCCCC----chhhhccCCCCEEecCCC
Q 011233 359 RLDLSNNNLERT----PASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 359 ~L~Ls~n~l~~l----~~~l~~l~~L~~L~ls~n 388 (490)
.|++.+|..+.+ -..+.-+++|++||-.+.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 888888777655 234455777777775544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=1.9e-05 Score=71.42 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=82.2
Q ss_pred ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCccc-chhhhccccCcE
Q 011233 43 NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTET-HSSIQYLNKLEV 121 (490)
Q Consensus 43 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~ 121 (490)
+..+.++++|++-++++..| .....|+.|++|.||-|+ ++.+..+..+++|++|+|..|.+.... -..+.++++|++
T Consensus 15 ~sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 15 CSDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hhHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44567899999999999988 455789999999999998 445667889999999999998775532 256789999999
Q ss_pred EEccCCCCCCcCCcccc------cCCccEEe
Q 011233 122 LDLRHCESLGSLPTSIH------SKYIEELD 146 (490)
Q Consensus 122 L~Ls~n~~~~~~p~~~~------l~~L~~L~ 146 (490)
|-|..|+-.+.-+.... +++|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999987776655433 78888886
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.08 E-value=8.7e-05 Score=76.35 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=20.7
Q ss_pred CCEEeCcCCCCCCCc--hhhhc-cCCCCEEecCCCCCc
Q 011233 357 IVRLDLSNNNLERTP--ASLYQ-LSSIKYLKLFDNNFK 391 (490)
Q Consensus 357 L~~L~Ls~n~l~~l~--~~l~~-l~~L~~L~ls~n~~~ 391 (490)
++.|+++.+...+.. ..... +..++.+++++++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 777888777655331 11122 566777777777653
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.00 E-value=0.0013 Score=54.17 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=38.8
Q ss_pred ccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccc
Q 011233 256 LGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLV 335 (490)
Q Consensus 256 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 335 (490)
|.++++|+.+.+.. .+...-...|.++++|+.+.+.+ .+...-...+.++++++.+.+.+ .........|..+++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-NLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-TTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc-cccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34444444444442 23332233444444555555444 22222223344444455555533 22222233444555555
Q ss_pred eeeccCcccccCC-ccccCCCCCCEEeCcCCCCCCCc-hhhhccCCC
Q 011233 336 VLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLERTP-ASLYQLSSI 380 (490)
Q Consensus 336 ~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L 380 (490)
.+++..+ +..++ ..|.++ +++.+.+.. .+..++ ..|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555443 44433 344444 555555543 334442 334444444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.82 E-value=0.0025 Score=52.49 Aligned_cols=97 Identities=8% Similarity=0.079 Sum_probs=29.4
Q ss_pred ccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccc
Q 011233 256 LGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLV 335 (490)
Q Consensus 256 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 335 (490)
|..+++++.+.+..+ +...-...|.++++++.+.+.+ .....-...+..+++|+.+++..+ +...-...|.++ .++
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 344444444444432 3322222344444444444432 221112223334445555554332 222223334444 555
Q ss_pred eeeccCcccccCC-ccccCCCCC
Q 011233 336 VLIVKGTAIREVP-ESLGQLSSI 357 (490)
Q Consensus 336 ~L~L~~n~l~~~p-~~~~~l~~L 357 (490)
.+.+.. .+..++ ..|.++++|
T Consensus 107 ~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 107 EINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEE-TT-B-SS----GGG-----
T ss_pred EEEECC-CccEECCccccccccC
Confidence 555543 333333 344444444
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.66 E-value=0.00037 Score=71.68 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=20.2
Q ss_pred cceeeccCcccccCC--ccccC-CCCCCEEeCcCCCCC
Q 011233 334 LVVLIVKGTAIREVP--ESLGQ-LSSIVRLDLSNNNLE 368 (490)
Q Consensus 334 L~~L~L~~n~l~~~p--~~~~~-l~~L~~L~Ls~n~l~ 368 (490)
++.|+++.+...... ..... +..++.++++++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 778888877644421 11111 566777777776543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.88 E-value=0.0044 Score=33.43 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=15.5
Q ss_pred CccEEEcCCCCcccccccccC
Q 011233 48 NLVSLKMPGRKVKQLWNDVRN 68 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~l~~~~~~ 68 (490)
+|++|++++|+++.+|+.|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477888888888877765654
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.84 E-value=0.0021 Score=34.67 Aligned_cols=17 Identities=53% Similarity=0.706 Sum_probs=7.9
Q ss_pred CCEEeCcCCCCCCCchh
Q 011233 357 IVRLDLSNNNLERTPAS 373 (490)
Q Consensus 357 L~~L~Ls~n~l~~l~~~ 373 (490)
|++||+++|+++.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.26 E-value=0.0094 Score=29.82 Aligned_cols=16 Identities=50% Similarity=0.715 Sum_probs=6.5
Q ss_pred CCCEEeCcCCCCCCCc
Q 011233 356 SIVRLDLSNNNLERTP 371 (490)
Q Consensus 356 ~L~~L~Ls~n~l~~l~ 371 (490)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.37 E-value=0.028 Score=28.07 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=6.5
Q ss_pred CccEEEcCCCCccccc
Q 011233 48 NLVSLKMPGRKVKQLW 63 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~l~ 63 (490)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.84 E-value=0.0015 Score=66.21 Aligned_cols=182 Identities=26% Similarity=0.277 Sum_probs=85.5
Q ss_pred cCcEEEeccCCCcccc----cccccCCCCCCEEecccCCCCCCCC--CCCcccccC-CCCcEEEccCCCCCCc----cCc
Q 011233 186 KLDRLSIQDCTRLENI----SSSIFKLKSLQYIEIKRCSNLKSLE--SLPNNLCMF-KSLASLEIINCPKLER----LPD 254 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~----~~~~~~l~~L~~L~L~~~n~l~~~~--~l~~~~~~l-~~L~~L~l~~n~~~~~----~p~ 254 (490)
.+..+.+.+|.+.... ...+...+.|+.|++++ |.+.+.+ .+-..+... ..+++|++..|..... +.+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3666777777665432 23355677788888888 6663210 011122222 4555666666555432 334
Q ss_pred cccCccccceeEccCccccc----cchhhHh----hccccccccccccccccc----cCccccCccc-cceeeccccccc
Q 011233 255 ELGNSKALEELRVEGAAIRE----RLPESLG----QLALLCELKMIKCSSFES----LPSSLCMLKY-LTSLAIIDCKNF 321 (490)
Q Consensus 255 ~~~~l~~L~~L~ls~n~l~~----~~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~Ls~n~~~ 321 (490)
.+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++.. +...+...+. +..+++..|++.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 44455666777777666531 1122222 244556666665554321 1111222222 444555555433
Q ss_pred cc----CCcccCCc-cccceeeccCccccc-----CCccccCCCCCCEEeCcCCCCC
Q 011233 322 KR----LPNELGNL-KCLVVLIVKGTAIRE-----VPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 322 ~~----~~~~~~~l-~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
+. ....+..+ +.++.++++.|.+++ +...+..++.++++.++.|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 22 11122233 344555555555444 2233344445555555555444
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.47 E-value=0.00079 Score=68.19 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=39.4
Q ss_pred ccccceeEccCccccccch----hhHhhccc-cccccccccccccc----cCccccCc-cccceeecccccccccC----
Q 011233 259 SKALEELRVEGAAIRERLP----ESLGQLAL-LCELKMIKCSSFES----LPSSLCML-KYLTSLAIIDCKNFKRL---- 324 (490)
Q Consensus 259 l~~L~~L~ls~n~l~~~~~----~~~~~l~~-L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~Ls~n~~~~~~---- 324 (490)
..++++|.++++.++.... ..+...+. +.++++..|..... +...+..+ ..++.++++.|.+...-
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 4455555555555442111 12222333 44555555444322 12222333 45555566555554422
Q ss_pred CcccCCccccceeeccCccccc
Q 011233 325 PNELGNLKCLVVLIVKGTAIRE 346 (490)
Q Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~ 346 (490)
...+..++.++.+.++.|.+..
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHhhhHHHHHhhcccCcccc
Confidence 2233444555566666655544
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.37 E-value=0.085 Score=29.61 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=15.0
Q ss_pred CCCCCEEeCcCCCCCCCchhh
Q 011233 354 LSSIVRLDLSNNNLERTPASL 374 (490)
Q Consensus 354 l~~L~~L~Ls~n~l~~l~~~l 374 (490)
+++|++|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356778888888888776543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.37 E-value=0.085 Score=29.61 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=15.0
Q ss_pred CCCCCEEeCcCCCCCCCchhh
Q 011233 354 LSSIVRLDLSNNNLERTPASL 374 (490)
Q Consensus 354 l~~L~~L~Ls~n~l~~l~~~l 374 (490)
+++|++|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356778888888888776543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.65 E-value=0.0036 Score=55.55 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=68.6
Q ss_pred cCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEe
Q 011233 305 CMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLK 384 (490)
Q Consensus 305 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ 384 (490)
......+.||++.|+.. .+...|+-+..++.|+++.|++.-+|..++....++.+++..|..+..|.++...+.+++++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 34456677888777633 33344666778888888888888888888888888888888888888888888888899888
Q ss_pred cCCCCCcccc
Q 011233 385 LFDNNFKHRL 394 (490)
Q Consensus 385 ls~n~~~~~l 394 (490)
+..|++...+
T Consensus 118 ~k~~~~~~~~ 127 (326)
T KOG0473|consen 118 QKKTEFFRKL 127 (326)
T ss_pred hccCcchHHH
Confidence 8888865433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.09 E-value=0.0059 Score=54.23 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=36.7
Q ss_pred CCccceeeecccccccc---ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecC
Q 011233 26 LTEVRYFEWHQFPLETL---NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLG 101 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l---~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~ 101 (490)
....+.||++.|++..+ ++.++.+..|+++.|.+..+|..++....++.+++..|... ..| .++..++++++++.
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 34444555555544443 44444455555555555555544444444454554444322 222 44455555555554
Q ss_pred CCC
Q 011233 102 SCS 104 (490)
Q Consensus 102 ~n~ 104 (490)
++.
T Consensus 120 ~~~ 122 (326)
T KOG0473|consen 120 KTE 122 (326)
T ss_pred cCc
Confidence 443
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.43 E-value=0.086 Score=46.06 Aligned_cols=83 Identities=20% Similarity=0.219 Sum_probs=48.4
Q ss_pred ccccceeEccCccccccchhhHhhccccccccccccccccccC-ccc-cCccccceeeccccccccc-CCcccCCccccc
Q 011233 259 SKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLP-SSL-CMLKYLTSLAIIDCKNFKR-LPNELGNLKCLV 335 (490)
Q Consensus 259 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~ 335 (490)
-..++.++.++..+...--+-+.+++.++.|.+.+|...++-- +.+ +..++|+.|++++|.-... --..+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3467888888888776555667777788888888776654411 011 1335666666666643322 223344455555
Q ss_pred eeeccC
Q 011233 336 VLIVKG 341 (490)
Q Consensus 336 ~L~L~~ 341 (490)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.92 E-value=0.41 Score=26.74 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=12.0
Q ss_pred CCccEEEcCCCCcccccc
Q 011233 47 ENLVSLKMPGRKVKQLWN 64 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~ 64 (490)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 466777777777776663
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.92 E-value=0.41 Score=26.74 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=12.0
Q ss_pred CCccEEEcCCCCcccccc
Q 011233 47 ENLVSLKMPGRKVKQLWN 64 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~ 64 (490)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 466777777777776663
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.84 E-value=0.35 Score=27.05 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=14.1
Q ss_pred CCCCEEeCcCCCCCCCch
Q 011233 355 SSIVRLDLSNNNLERTPA 372 (490)
Q Consensus 355 ~~L~~L~Ls~n~l~~l~~ 372 (490)
++|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888874
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=0.16 Score=44.50 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=36.8
Q ss_pred CccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC--Cc-ccCCCCcEEecCCCCCCc-ccchhhhccccCcEE
Q 011233 48 NLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP--DL-SLARNLEILDLGSCSSLT-ETHSSIQYLNKLEVL 122 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~--~~-~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L 122 (490)
.++.+|-++..|...- ..+.+++.++.|.+.+|.-.+..- .+ +-.++|+.|++++|.-++ .--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4555555555554432 444555555555555554332211 11 134455555555554222 222344455555555
Q ss_pred EccC
Q 011233 123 DLRH 126 (490)
Q Consensus 123 ~Ls~ 126 (490)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.36 E-value=0.74 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=9.8
Q ss_pred cccceeEccCccccccch
Q 011233 260 KALEELRVEGAAIRERLP 277 (490)
Q Consensus 260 ~~L~~L~ls~n~l~~~~~ 277 (490)
++|++|++++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 466777777777665333
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.09 E-value=1.6 Score=24.47 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=9.8
Q ss_pred CCCCEEeCcCCCCCCC
Q 011233 355 SSIVRLDLSNNNLERT 370 (490)
Q Consensus 355 ~~L~~L~Ls~n~l~~l 370 (490)
.+|+.|++++|+++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.77 E-value=3.9 Score=41.58 Aligned_cols=80 Identities=25% Similarity=0.216 Sum_probs=46.7
Q ss_pred ccCCCCccEEEcCCCCccccc---ccccCCCCCCEEecCCC--CCCCCCCCcc--cCCCCcEEecCCCCCCcccc---hh
Q 011233 43 NINGENLVSLKMPGRKVKQLW---NDVRNLVNLKYIDLSHS--ESLTKLPDLS--LARNLEILDLGSCSSLTETH---SS 112 (490)
Q Consensus 43 ~~~~~~L~~L~Ls~n~i~~l~---~~~~~l~~L~~L~Ls~n--~~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~---~~ 112 (490)
-.+.+.+..+.|++|++..+- .--...++|+.|+|++| .+.. .+++. ....|++|-+.+|.+..... ..
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 345677788888888776542 22245678888888887 2221 11222 23357788888887665432 11
Q ss_pred h----hccccCcEEE
Q 011233 113 I----QYLNKLEVLD 123 (490)
Q Consensus 113 l----~~l~~L~~L~ 123 (490)
+ ..+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 1 2456666665
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.54 E-value=5.9 Score=22.55 Aligned_cols=14 Identities=57% Similarity=0.722 Sum_probs=8.7
Q ss_pred CCCCEEeCcCCCCC
Q 011233 355 SSIVRLDLSNNNLE 368 (490)
Q Consensus 355 ~~L~~L~Ls~n~l~ 368 (490)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666665
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.36 E-value=6.4 Score=21.82 Aligned_cols=15 Identities=20% Similarity=0.671 Sum_probs=10.0
Q ss_pred CCCCEEecccCCCCC
Q 011233 209 KSLQYIEIKRCSNLK 223 (490)
Q Consensus 209 ~~L~~L~L~~~n~l~ 223 (490)
++|++|++++|.+++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 566777777776664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.41 E-value=6.4 Score=40.09 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=41.1
Q ss_pred CCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcccc--CccccceeEccCccccc
Q 011233 207 KLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELG--NSKALEELRVEGAAIRE 274 (490)
Q Consensus 207 ~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~--~l~~L~~L~ls~n~l~~ 274 (490)
+.+.+..+++++ |++..++.+...-...|+|+.|+|++|...-....++. +...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsn-NrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSN-NRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeeccc-chhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456677777888 77766665555555677888888888722111111122 23467788888887764
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.50 E-value=82 Score=31.85 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=11.8
Q ss_pred cCcEEEccCCCCCCcCCcccc
Q 011233 118 KLEVLDLRHCESLGSLPTSIH 138 (490)
Q Consensus 118 ~L~~L~Ls~n~~~~~~p~~~~ 138 (490)
.+.+++++.|..-+.+|....
T Consensus 215 ~lteldls~n~~Kddip~~~n 235 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLN 235 (553)
T ss_pred cccccccccCCCCccchhHHH
Confidence 355666666655555555444
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.96 E-value=26 Score=43.10 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=14.9
Q ss_pred eCcCCCCCCCc-hhhhccCCCCEEecCCCCCc
Q 011233 361 DLSNNNLERTP-ASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 361 ~Ls~n~l~~l~-~~l~~l~~L~~L~ls~n~~~ 391 (490)
||++|+|+.+| ..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 34555555553 23334555555555555543
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.67 E-value=64 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=18.5
Q ss_pred EcCCCCccccc-ccccCCCCCCEEecCCCCCCC
Q 011233 53 KMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLT 84 (490)
Q Consensus 53 ~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~ 84 (490)
||++|+|+.|| ..|..+++|++|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 35566666655 445556666666666665543
Done!