Query 011233
Match_columns 490
No_of_seqs 403 out of 4496
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 03:54:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.2E-50 1.1E-54 434.4 29.0 347 45-396 176-556 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-49 4.2E-54 429.8 28.5 407 25-455 221-723 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.2E-45 7.7E-50 387.3 30.1 443 3-473 34-559 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-44 5.2E-49 386.0 31.7 478 2-483 25-634 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4.2E-44 1.4E-48 377.6 32.2 431 18-476 25-538 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-44 2E-48 376.5 30.4 418 27-476 32-560 (606)
7 4eco_A Uncharacterized protein 100.0 9.7E-45 3.3E-49 383.1 19.7 400 36-475 66-601 (636)
8 4eco_A Uncharacterized protein 100.0 1.1E-42 3.7E-47 367.5 24.4 323 61-395 197-582 (636)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-41 5.8E-46 362.4 32.7 455 17-476 16-599 (680)
10 3vq2_A TLR4, TOLL-like recepto 100.0 8.9E-42 3.1E-46 359.8 29.9 380 2-390 32-533 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 1.1E-42 3.8E-47 374.1 22.5 347 88-475 443-841 (876)
12 2z63_A TOLL-like receptor 4, v 100.0 1.6E-41 5.5E-46 355.1 26.4 376 2-392 28-484 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 7.9E-41 2.7E-45 364.7 32.4 433 25-473 22-559 (844)
14 3j0a_A TOLL-like receptor 5; m 100.0 4.2E-41 1.4E-45 366.9 29.8 439 2-453 24-564 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 1.1E-40 3.8E-45 348.8 27.4 389 1-396 51-536 (570)
16 4ecn_A Leucine-rich repeat pro 100.0 1.9E-40 6.4E-45 356.9 28.7 328 57-396 435-823 (876)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-40 5.6E-45 346.0 24.9 430 18-476 18-512 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 6.9E-40 2.4E-44 339.0 27.9 377 5-395 3-485 (520)
19 3v47_A TOLL-like receptor 5B a 100.0 2.7E-39 9.1E-44 328.9 24.0 351 25-397 28-414 (455)
20 2z81_A CD282 antigen, TOLL-lik 100.0 4.1E-39 1.4E-43 335.4 24.4 149 2-152 26-184 (549)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-39 7.4E-44 335.3 18.1 410 30-476 3-483 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-37 5.3E-42 324.2 27.3 375 5-396 34-515 (562)
23 1o6v_A Internalin A; bacterial 100.0 7.7E-37 2.6E-41 311.5 30.3 322 25-392 66-389 (466)
24 3v47_A TOLL-like receptor 5B a 100.0 2.6E-37 8.8E-42 314.3 25.9 352 2-369 30-409 (455)
25 1o6v_A Internalin A; bacterial 100.0 2.9E-36 9.9E-41 307.3 30.8 324 26-395 45-370 (466)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-37 1.2E-41 326.2 24.0 417 19-475 45-581 (635)
27 3bz5_A Internalin-J, INLJ; leu 100.0 9.8E-36 3.4E-40 301.5 31.8 352 25-465 40-403 (457)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-36 7E-41 315.8 24.9 333 26-391 30-486 (562)
29 4g8a_A TOLL-like receptor 4; l 100.0 1E-35 3.4E-40 315.0 30.5 386 2-395 52-584 (635)
30 1jl5_A Outer protein YOPM; leu 100.0 4E-36 1.4E-40 304.1 24.7 386 2-458 11-420 (454)
31 2id5_A Lingo-1, leucine rich r 100.0 2.2E-35 7.7E-40 301.8 24.7 315 30-368 14-333 (477)
32 2id5_A Lingo-1, leucine rich r 100.0 4.2E-35 1.4E-39 299.8 26.5 320 49-395 13-337 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-34 4.1E-39 293.5 28.0 329 1-396 41-392 (457)
34 4fmz_A Internalin; leucine ric 100.0 5.8E-34 2E-38 279.0 27.1 315 34-391 29-346 (347)
35 1jl5_A Outer protein YOPM; leu 100.0 2.9E-34 1E-38 290.4 25.3 344 1-391 33-409 (454)
36 4fmz_A Internalin; leucine ric 100.0 5.8E-34 2E-38 279.1 26.5 303 25-368 42-346 (347)
37 3o6n_A APL1; leucine-rich repe 100.0 5.4E-34 1.8E-38 283.8 24.1 307 45-392 43-353 (390)
38 3oja_B Anopheles plasmodium-re 100.0 1.3E-33 4.4E-38 296.4 23.9 308 45-393 49-360 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 2.6E-33 9E-38 278.9 24.9 308 21-369 39-353 (390)
40 3oja_B Anopheles plasmodium-re 100.0 8.7E-33 3E-37 290.0 24.2 305 23-368 47-358 (597)
41 1xku_A Decorin; proteoglycan, 100.0 2.1E-31 7.1E-36 259.0 25.2 287 47-389 31-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-31 8.7E-36 258.6 23.3 285 47-389 33-331 (332)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-31 8.6E-36 258.6 23.0 263 71-391 34-307 (332)
44 1ogq_A PGIP-2, polygalacturona 100.0 3.2E-32 1.1E-36 262.4 15.6 257 36-343 33-302 (313)
45 1xku_A Decorin; proteoglycan, 100.0 1.3E-30 4.4E-35 253.4 26.3 265 70-391 31-306 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-34 7.2E-39 293.3 -2.9 348 26-391 2-411 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-31 6.2E-36 257.2 13.2 207 178-390 94-303 (313)
48 1z7x_W Ribonuclease inhibitor; 100.0 6.4E-33 2.2E-37 282.3 -3.2 372 2-392 3-441 (461)
49 4fcg_A Uncharacterized protein 100.0 1.5E-28 5.2E-33 238.2 19.5 231 46-318 80-311 (328)
50 2z80_A TOLL-like receptor 2, v 100.0 1.2E-28 4.2E-33 241.7 17.6 279 46-396 30-319 (353)
51 4fcg_A Uncharacterized protein 100.0 9.2E-28 3.1E-32 232.7 19.3 128 259-388 182-311 (328)
52 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.9E-32 230.1 17.1 248 50-322 10-262 (306)
53 3ogk_B Coronatine-insensitive 100.0 8.5E-30 2.9E-34 267.5 2.3 386 2-392 73-527 (592)
54 2z66_A Variable lymphocyte rec 99.9 1E-26 3.6E-31 223.3 19.9 225 27-274 28-262 (306)
55 1ozn_A Reticulon 4 receptor; N 99.9 3.1E-26 1.1E-30 217.7 22.2 221 30-274 14-239 (285)
56 2z80_A TOLL-like receptor 2, v 99.9 5.9E-27 2E-31 229.7 17.0 271 27-323 31-316 (353)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-26 6.4E-31 219.2 19.5 267 49-342 13-284 (285)
58 1wwl_A Monocyte differentiatio 99.9 2.1E-28 7E-33 235.8 5.0 203 183-392 93-310 (312)
59 3zyi_A Leucine-rich repeat-con 99.9 4.1E-26 1.4E-30 231.4 22.2 243 48-319 55-301 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-25 8.6E-30 231.9 28.0 260 47-393 40-299 (622)
61 3zyj_A Leucine-rich repeat-con 99.9 7.3E-26 2.5E-30 228.7 21.7 243 48-320 44-291 (440)
62 3ogk_B Coronatine-insensitive 99.9 1.1E-28 3.7E-33 259.1 -2.2 382 1-388 111-548 (592)
63 1wwl_A Monocyte differentiatio 99.9 2.2E-27 7.4E-32 228.7 6.8 252 66-369 39-310 (312)
64 3zyi_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 224.3 20.8 244 28-297 55-303 (452)
65 3zyj_A Leucine-rich repeat-con 99.9 1.1E-24 3.7E-29 220.1 24.1 245 28-297 44-292 (440)
66 3o53_A Protein LRIM1, AGAP0063 99.9 7.4E-27 2.5E-31 225.4 7.4 255 50-341 13-271 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 8.9E-25 3.1E-29 227.8 23.3 263 27-351 40-304 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 9.3E-27 3.2E-31 224.7 6.1 193 182-388 77-272 (317)
69 2p1m_B Transport inhibitor res 99.9 9E-27 3.1E-31 244.6 0.8 384 2-390 66-518 (594)
70 3oja_A Leucine-rich immune mol 99.9 3.6E-25 1.2E-29 226.0 11.5 149 185-340 120-270 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 2E-24 6.7E-29 204.2 15.6 220 173-397 18-243 (276)
72 3oja_A Leucine-rich immune mol 99.9 5.7E-25 1.9E-29 224.5 9.5 190 183-386 78-270 (487)
73 2p1m_B Transport inhibitor res 99.9 6.4E-26 2.2E-30 238.1 -1.7 362 1-389 104-542 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 8.8E-23 3E-27 192.8 19.5 218 33-274 13-238 (276)
75 3rfs_A Internalin B, repeat mo 99.9 9.2E-24 3.1E-28 199.1 12.0 226 186-461 20-247 (272)
76 4glp_A Monocyte differentiatio 99.9 4.7E-23 1.6E-27 198.2 17.1 203 183-391 89-307 (310)
77 1p9a_G Platelet glycoprotein I 99.9 5.8E-23 2E-27 195.2 17.4 206 180-394 5-211 (290)
78 3rfs_A Internalin B, repeat mo 99.9 4E-23 1.4E-27 194.7 15.5 224 28-307 20-245 (272)
79 2o6q_A Variable lymphocyte rec 99.9 2.3E-22 7.8E-27 189.3 20.0 204 185-394 16-221 (270)
80 2o6q_A Variable lymphocyte rec 99.9 7.2E-22 2.5E-26 185.9 22.2 213 36-274 4-219 (270)
81 2ast_B S-phase kinase-associat 99.9 3.1E-24 1.1E-28 208.8 4.9 267 36-329 36-314 (336)
82 2xwt_C Thyrotropin receptor; s 99.9 2.3E-22 7.8E-27 185.8 15.0 204 174-389 23-237 (239)
83 1p9a_G Platelet glycoprotein I 99.9 8.3E-22 2.8E-26 187.3 17.8 200 139-368 9-208 (290)
84 2ast_B S-phase kinase-associat 99.9 4.2E-23 1.4E-27 200.8 6.8 255 26-306 46-315 (336)
85 4glp_A Monocyte differentiatio 99.9 5.8E-22 2E-26 190.5 14.1 227 94-369 65-308 (310)
86 3goz_A Leucine-rich repeat-con 99.9 6.8E-23 2.3E-27 201.4 6.5 101 52-152 3-121 (362)
87 2ca6_A RAN GTPase-activating p 99.9 7.8E-24 2.7E-28 210.1 -0.5 248 108-394 23-319 (386)
88 2ca6_A RAN GTPase-activating p 99.9 9.9E-24 3.4E-28 209.3 -1.0 86 43-128 28-133 (386)
89 3m19_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 178.8 16.5 178 210-393 15-194 (251)
90 2xwt_C Thyrotropin receptor; s 99.9 4E-21 1.4E-25 177.4 15.3 179 180-365 50-236 (239)
91 1h6u_A Internalin H; cell adhe 99.9 2.9E-21 9.8E-26 185.3 14.6 195 181-392 37-231 (308)
92 1h6u_A Internalin H; cell adhe 99.9 5.8E-21 2E-25 183.2 15.6 209 29-274 21-231 (308)
93 3goz_A Leucine-rich repeat-con 99.9 2.4E-22 8.2E-27 197.5 5.9 226 31-274 2-267 (362)
94 3m19_A Variable lymphocyte rec 99.8 1.5E-19 5.2E-24 168.0 16.6 180 185-370 14-194 (251)
95 3cvr_A Invasion plasmid antige 99.8 1.2E-19 4.1E-24 186.9 16.8 182 186-396 60-248 (571)
96 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.7E-24 176.9 14.9 234 30-293 12-255 (350)
97 4ay9_X Follicle-stimulating ho 99.8 3.3E-19 1.1E-23 174.2 17.3 59 327-388 197-256 (350)
98 3cvr_A Invasion plasmid antige 99.8 1.1E-18 3.6E-23 179.9 18.5 191 46-285 58-255 (571)
99 2o6s_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 159.3 13.3 161 260-461 28-190 (208)
100 1h6t_A Internalin B; cell adhe 99.8 4.9E-19 1.7E-23 168.2 11.7 170 207-391 44-213 (291)
101 2o6s_A Variable lymphocyte rec 99.8 5.4E-18 1.9E-22 152.8 16.3 178 50-283 10-188 (208)
102 1h6t_A Internalin B; cell adhe 99.8 1.5E-18 5E-23 165.0 13.1 119 28-151 25-145 (291)
103 4ezg_A Putative uncharacterize 99.8 8E-19 2.7E-23 156.8 10.1 152 234-391 42-194 (197)
104 2xot_A Amphoterin-induced prot 99.8 2.3E-18 7.9E-23 168.9 12.6 176 212-393 21-204 (361)
105 3e6j_A Variable lymphocyte rec 99.8 8.7E-18 3E-22 153.8 14.4 155 238-395 21-176 (229)
106 1m9s_A Internalin B; cell inva 99.7 6.6E-18 2.3E-22 175.8 13.1 190 26-250 20-211 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-17 4.4E-22 151.6 13.2 154 239-395 14-170 (220)
108 1m9s_A Internalin B; cell inva 99.7 2.3E-17 8E-22 171.6 16.8 192 46-274 20-211 (605)
109 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.5E-22 151.0 13.1 134 260-393 32-167 (220)
110 4ezg_A Putative uncharacterize 99.7 5.1E-18 1.7E-22 151.6 9.6 154 182-368 41-194 (197)
111 2v9t_B SLIT homolog 2 protein 99.7 1.9E-17 6.4E-22 150.5 12.9 151 212-368 14-165 (220)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-17 8.8E-22 149.6 12.4 151 212-368 14-166 (220)
113 3e6j_A Variable lymphocyte rec 99.7 6.5E-17 2.2E-21 147.9 13.7 152 211-369 21-173 (229)
114 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.5E-22 154.4 10.5 99 46-150 18-116 (263)
115 1dce_A Protein (RAB geranylger 99.7 6.8E-19 2.3E-23 182.1 -3.6 180 207-395 347-550 (567)
116 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.4E-22 154.4 6.8 168 184-391 18-185 (263)
117 2xot_A Amphoterin-induced prot 99.7 7.1E-17 2.4E-21 158.3 10.4 175 188-368 21-202 (361)
118 1dce_A Protein (RAB geranylger 99.7 3.9E-19 1.3E-23 183.9 -7.6 120 238-362 443-567 (567)
119 4b8c_D Glucose-repressible alc 99.7 1.3E-16 4.5E-21 170.1 10.7 185 47-278 173-359 (727)
120 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4E-21 138.8 8.0 129 260-390 24-159 (168)
121 2ell_A Acidic leucine-rich nuc 99.6 1.5E-16 5.1E-21 138.1 7.4 135 236-372 24-164 (168)
122 4b8c_D Glucose-repressible alc 99.6 6.6E-17 2.3E-21 172.3 5.9 130 177-318 239-369 (727)
123 2je0_A Acidic leucine-rich nuc 99.6 1.4E-16 4.9E-21 135.3 5.6 126 260-387 17-149 (149)
124 3sb4_A Hypothetical leucine ri 99.6 5.5E-16 1.9E-20 150.0 9.2 102 282-385 224-328 (329)
125 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.6E-20 135.1 10.0 130 263-395 11-143 (192)
126 1w8a_A SLIT protein; signaling 99.6 5.1E-15 1.7E-19 131.4 12.4 128 30-157 11-143 (192)
127 3sb4_A Hypothetical leucine ri 99.6 7.2E-16 2.5E-20 149.1 6.9 285 26-362 24-328 (329)
128 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-15 4.2E-20 133.4 6.6 133 256-391 15-153 (176)
129 2je0_A Acidic leucine-rich nuc 99.6 7.4E-16 2.5E-20 130.9 4.2 125 237-363 18-148 (149)
130 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 126.7 11.2 132 262-396 9-142 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 1E-14 3.6E-19 129.4 10.3 128 263-394 13-142 (193)
132 2wfh_A SLIT homolog 2 protein 99.6 3E-14 1E-18 126.4 13.3 125 30-155 13-141 (193)
133 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 121.2 13.1 128 29-157 9-141 (177)
134 1a9n_A U2A', U2A'; complex (nu 99.5 4.5E-14 1.5E-18 123.4 10.1 107 43-151 15-124 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 1.7E-16 5.8E-21 141.8 -5.5 129 255-390 43-184 (198)
136 4fdw_A Leucine rich hypothetic 99.5 1.2E-12 4.2E-17 129.4 19.6 261 69-368 112-383 (401)
137 4fdw_A Leucine rich hypothetic 99.5 1E-12 3.5E-17 129.9 18.9 241 92-370 112-360 (401)
138 1ds9_A Outer arm dynein; leuci 99.4 1.6E-15 5.6E-20 135.3 -4.0 131 231-368 43-185 (198)
139 4fs7_A Uncharacterized protein 99.4 2.6E-12 8.9E-17 127.3 18.3 302 43-388 67-376 (394)
140 4fs7_A Uncharacterized protein 99.4 5.4E-12 1.8E-16 125.0 19.0 195 180-388 157-353 (394)
141 3g39_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 110.1 11.8 105 49-155 11-117 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.7E-17 113.0 8.8 106 287-395 15-122 (174)
143 3g39_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 109.4 11.3 105 28-132 10-117 (170)
144 2r9u_A Variable lymphocyte rec 99.3 8.1E-12 2.8E-16 108.6 11.6 102 50-154 15-119 (174)
145 4gt6_A Cell surface protein; l 99.3 2.5E-10 8.5E-15 113.0 20.2 103 43-149 59-169 (394)
146 3un9_A NLR family member X1; l 99.3 4.1E-13 1.4E-17 131.5 -0.1 159 209-368 72-252 (372)
147 3un9_A NLR family member X1; l 99.1 1.9E-12 6.6E-17 126.7 -2.2 16 259-274 238-253 (372)
148 4gt6_A Cell surface protein; l 99.1 2.6E-09 8.9E-14 105.6 18.8 313 27-389 64-389 (394)
149 2ifg_A High affinity nerve gro 99.1 1.5E-10 5E-15 112.6 9.5 103 264-369 12-117 (347)
150 2ifg_A High affinity nerve gro 99.1 2.9E-10 9.9E-15 110.4 10.2 104 50-155 11-118 (347)
151 4h09_A Hypothetical leucine ri 99.1 1.4E-08 4.9E-13 99.7 21.3 75 46-126 45-122 (379)
152 4h09_A Hypothetical leucine ri 98.9 6.1E-08 2.1E-12 95.2 19.4 287 66-388 42-343 (379)
153 2ra8_A Uncharacterized protein 98.9 7.6E-10 2.6E-14 107.4 5.0 104 185-292 107-227 (362)
154 2ra8_A Uncharacterized protein 98.8 5.5E-09 1.9E-13 101.4 7.1 63 235-297 251-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 1.3E-08 4.4E-13 89.1 0.6 86 305-390 62-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.3 4.8E-08 1.6E-12 85.5 -0.3 61 308-368 93-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 2.5E-07 8.7E-12 85.1 3.3 99 46-146 140-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2.4E-07 8.3E-12 85.3 2.1 78 306-384 168-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 7.2E-07 2.5E-11 76.2 3.5 81 48-128 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 1E-05 3.5E-10 69.1 4.0 34 237-270 62-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 7.1E-05 2.4E-09 65.1 1.7 87 304-390 66-169 (197)
162 3rfe_A Platelet glycoprotein I 97.1 0.00085 2.9E-08 54.4 6.4 57 335-393 11-70 (130)
163 3rfe_A Platelet glycoprotein I 96.7 0.0035 1.2E-07 50.7 6.6 55 50-106 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00059 2E-08 59.3 1.1 85 305-389 38-137 (197)
165 2lz0_A Uncharacterized protein 39.5 33 0.0011 25.4 4.1 37 88-125 15-51 (100)
166 2lz0_A Uncharacterized protein 31.0 51 0.0018 24.4 4.0 44 57-102 6-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-50 Score=434.37 Aligned_cols=347 Identities=22% Similarity=0.304 Sum_probs=256.2
Q ss_pred CCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEc
Q 011233 45 NGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDL 124 (490)
Q Consensus 45 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 124 (490)
.+++|++|++++|.+.+.. .+..+++|++|++++|.+.+.+|.++.+++|++|++++|.+.+.+|..++++++|++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccC-CcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 3444444444444444322 125678888888888888777778888899999999998888888888888999999999
Q ss_pred cCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhh---ccCC-cCCccccccccCcEEEeccCCCccc
Q 011233 125 RHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIK---VGIK-ELPSSIECLSKLDRLSIQDCTRLEN 200 (490)
Q Consensus 125 s~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~---~~~~-~lp~~~~~l~~L~~L~L~~n~~~~~ 200 (490)
++|.+.+.+|.. .+++|++|++++|.+.+.+|..+....+.|+.++ +.+. .+|..++.+++|++|++++|.+.+.
T Consensus 255 s~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 255 SSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp CSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence 888877766665 6778888888888877777776655433555554 3333 5667778888888888888877777
Q ss_pred cccc-ccCCCCCCEEecccCCCCCCCCCCCccccc---------------------------CCCCcEEEccCCCCCCcc
Q 011233 201 ISSS-IFKLKSLQYIEIKRCSNLKSLESLPNNLCM---------------------------FKSLASLEIINCPKLERL 252 (490)
Q Consensus 201 ~~~~-~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~---------------------------l~~L~~L~l~~n~~~~~~ 252 (490)
+|.. +..+++|++|++++ |.++ +.+|..+.. +++|++|++++|.+.+.+
T Consensus 334 ip~~~l~~l~~L~~L~Ls~-n~l~--~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSF-NEFS--GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp CCHHHHTTCTTCCEEECCS-SEEE--ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred CCHHHHhcCCCCCEEeCcC-CccC--ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 7755 77778888888877 5554 345544443 445555666665555566
Q ss_pred CccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCcc
Q 011233 253 PDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLK 332 (490)
Q Consensus 253 p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~ 332 (490)
|..+..+++|++|++++|++++..|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.++++++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 77777777788888888877777777777778888888888777777777777788888888888887777888888888
Q ss_pred ccceeeccCccccc-CCccccCCCCCCEEeCcCCCCC-CCchhhhccCCCCEEecCCCCCcccccc
Q 011233 333 CLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLE-RTPASLYQLSSIKYLKLFDNNFKHRLLT 396 (490)
Q Consensus 333 ~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~ls~n~~~~~l~~ 396 (490)
+|++|++++|++++ +|.+++.+++|++|++++|+++ .+|..+..+++|++|++++|++.|.+|.
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 88888888888876 7777888888888888888887 5677788888888888888877665553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-49 Score=429.81 Aligned_cols=407 Identities=17% Similarity=0.195 Sum_probs=244.5
Q ss_pred CCCccceeeecccccccc----ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-Cccc-CCCCcEE
Q 011233 25 PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSL-ARNLEIL 98 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~-l~~L~~L 98 (490)
.+++|++|++++|.+++. +..+++|++|++++|.+++..+.. .+++|++|++++|.+.+.+| .+.. +++|++|
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 555666666666665543 555666666666666655422122 45556666666665555555 4443 3777777
Q ss_pred ecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcc-cc-cCCccEEeecCCCCCCCCcccccchhhhhhhhh---cc
Q 011233 99 DLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTS-IH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIK---VG 173 (490)
Q Consensus 99 ~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~---~~ 173 (490)
++++|.+.+.+|..++++++|++|++++|.+.+.+|.. +. +++|++|++++|.+.+.+|..+..+.+.|+.++ +.
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence 77777776677777777777777777777766666655 44 677777777777766666665544433333333 22
Q ss_pred CC-cCCccccc--cccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCC
Q 011233 174 IK-ELPSSIEC--LSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLE 250 (490)
Q Consensus 174 ~~-~lp~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~ 250 (490)
+. .+|..+.. +++|++|++++|.+.+.+|..+.++++|++|++++ |.++ +.+|..++.+++|++|++++|.+.+
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~--~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF-NYLS--GTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS-SEEE--SCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC-Cccc--CcccHHHhcCCCCCEEECCCCcccC
Confidence 11 23333333 45566666666655555565566666666666666 4554 4555556666666666666666665
Q ss_pred ccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCC
Q 011233 251 RLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGN 330 (490)
Q Consensus 251 ~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~ 330 (490)
.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..++.
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 66666666666666666666666555666666666666666666666566666666666666666666666666666666
Q ss_pred ccccceeeccCccccc-CCc------------------------------------------------------------
Q 011233 331 LKCLVVLIVKGTAIRE-VPE------------------------------------------------------------ 349 (490)
Q Consensus 331 l~~L~~L~L~~n~l~~-~p~------------------------------------------------------------ 349 (490)
+++|+.|++++|++++ +|.
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 6666666666665553 332
Q ss_pred ----------cccCCCCCCEEeCcCCCCC-CCchhhhccCCCCEEecCCCCCcccccc----------ccccccCCcccc
Q 011233 350 ----------SLGQLSSIVRLDLSNNNLE-RTPASLYQLSSIKYLKLFDNNFKHRLLT----------LSVDLNLVPNVL 408 (490)
Q Consensus 350 ----------~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~ls~n~~~~~l~~----------l~~~~n~~~~~~ 408 (490)
.++.+++|++||+++|+++ .+|..++.+++|++|++++|++.|.+|. ++++.| .+
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N----~l 692 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN----KL 692 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS----CC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC----cc
Confidence 2333456777777777776 5577777777777777777776654443 222222 33
Q ss_pred hhhhhhhhccccceeeecCeeeeccchhhhcccccceeeeEeccccc
Q 011233 409 SEIINDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRK 455 (490)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~ 455 (490)
.+.+|..+.. ++.++.||+++|+++|.||+.
T Consensus 693 ~g~ip~~l~~----------------l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 693 DGRIPQAMSA----------------LTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCCGGGGG----------------CCCCSEEECCSSEEEEECCSS
T ss_pred cCcCChHHhC----------------CCCCCEEECcCCcccccCCCc
Confidence 3333333322 677888999999999999975
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-45 Score=387.26 Aligned_cols=443 Identities=16% Similarity=0.115 Sum_probs=300.8
Q ss_pred cceEEEecCCcCccccccCCCC-CCCccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEe
Q 011233 3 ELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYID 76 (490)
Q Consensus 3 ~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~ 76 (490)
++++|+++++. -....+..+ .+++|++|++++|.++++ +..+++|++|++++|.++++ |..++++++|++|+
T Consensus 34 ~l~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNV--LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCC--CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCc--cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 46677777732 112224455 667777777777776665 56677777777777777665 45667777777777
Q ss_pred cCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCcc--EEeecCCCC
Q 011233 77 LSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIE--ELDFVGCSK 152 (490)
Q Consensus 77 Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~--~L~ls~n~~ 152 (490)
+++|.+.+..+ .++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. +++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 77776555433 566677777777777666653333333466777777776664444444444 66666 666666666
Q ss_pred CCCCcccccch-----------------------------------------------------hhhhhhhhccCCcCC-
Q 011233 153 LKNHPAISSSL-----------------------------------------------------IPLLSLIKVGIKELP- 178 (490)
Q Consensus 153 ~~~~~~~~~~~-----------------------------------------------------~~~L~~~~~~~~~lp- 178 (490)
.+..|..+... .+.|...++.+..++
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 55444332210 012223335556665
Q ss_pred ccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCc-ccc
Q 011233 179 SSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPD-ELG 257 (490)
Q Consensus 179 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~ 257 (490)
..+..+++|++|++++|.+. .+|..+..+++|++|++++ |.++ +..|..+..+++|++|++++|.+.+.+|. .+.
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSA-NKFE--NLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTT-CCCS--BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECcc-CCcC--cCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 34788889999999988766 6777788889999999998 7775 44466788888999999998888766655 477
Q ss_pred CccccceeEccCccccccc--hhhHhhccccccccccccccccccCccccCccccceeecccccccccCCc-ccCCcccc
Q 011233 258 NSKALEELRVEGAAIRERL--PESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPN-ELGNLKCL 334 (490)
Q Consensus 258 ~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L 334 (490)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 8888999999998888744 66788888999999988888887788888888899999998888776554 47888889
Q ss_pred ceeeccCccccc-CCccccCCCCCCEEeCcCCCCCC--C--chhhhccCCCCEEecCCCCCcc----------ccccccc
Q 011233 335 VVLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLER--T--PASLYQLSSIKYLKLFDNNFKH----------RLLTLSV 399 (490)
Q Consensus 335 ~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~~--l--~~~l~~l~~L~~L~ls~n~~~~----------~l~~l~~ 399 (490)
++|++++|.+++ .|..++.+++|++|++++|+++. + +..+..+++|++|++++|++.+ .+..+++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 999999988888 56778888889999999888874 2 3567888889999998887643 2333444
Q ss_pred cccCCcccchhhhhhhhccccceeeecCeeeeccchhhhcccccceeeeEeccccccccccccceeeeeccccc
Q 011233 400 DLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGN 473 (490)
Q Consensus 400 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~ 473 (490)
+.|. +.+..+..+.. .+.+ .||+++|++++..|+.+ ....++++++++.+.+
T Consensus 508 s~N~----l~~~~~~~l~~----------------l~~L-~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 508 SHNR----LTSSSIEALSH----------------LKGI-YLNLASNHISIILPSLL-PILSQQRTINLRQNPL 559 (606)
T ss_dssp CSSC----CCGGGGGGGTT----------------CCSC-EEECCSSCCCCCCGGGH-HHHHTSSEEECTTCCE
T ss_pred CCCc----cCcCChhHhCc----------------cccc-EEECcCCcccccCHhhc-ccCCCCCEEeCCCCCc
Confidence 4442 22233332222 3444 56777777776555544 3345566666665443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-44 Score=385.97 Aligned_cols=478 Identities=16% Similarity=0.131 Sum_probs=289.6
Q ss_pred CcceEEEecCCcCccccccC-CCC-CCCccceeeecccccccc----ccCCCCccEEEcCCCCcccccc-cccCCCCCCE
Q 011233 2 TELRTLKFYGSENKCMVSSL-EGV-PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLWN-DVRNLVNLKY 74 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~-~~~-~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~ 74 (490)
+++++|+++++. ....+ ..+ .+++|++|++++|.++++ +..+++|++|++++|.++.+|. .|.++++|++
T Consensus 25 ~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQ---LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSC---CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCC---CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 367778887732 22222 234 677888888888877776 5667788888888888877774 5777888888
Q ss_pred EecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc---cCCccEEeecCC
Q 011233 75 IDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH---SKYIEELDFVGC 150 (490)
Q Consensus 75 L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~---l~~L~~L~ls~n 150 (490)
|++++|.+.+..| .|+.+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+. +++|++|++++|
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 8888887666555 677788888888888777777777777788888888887775544444332 467777777777
Q ss_pred CCCCCCcccccchh--------------------------hhhh---hhhccCCcC-Ccccccccc--CcEEEeccCCCc
Q 011233 151 SKLKNHPAISSSLI--------------------------PLLS---LIKVGIKEL-PSSIECLSK--LDRLSIQDCTRL 198 (490)
Q Consensus 151 ~~~~~~~~~~~~~~--------------------------~~L~---~~~~~~~~l-p~~~~~l~~--L~~L~L~~n~~~ 198 (490)
.+.+..|..+..+. +.|+ +.++.+..+ |.++..++. |++|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 76665554332211 0111 111222221 233433332 555555555555
Q ss_pred ccccccccCCCCCCEEecccCCCCCCC---------------------------CCCCc----ccccCCCCcEEEccCCC
Q 011233 199 ENISSSIFKLKSLQYIEIKRCSNLKSL---------------------------ESLPN----NLCMFKSLASLEIINCP 247 (490)
Q Consensus 199 ~~~~~~~~~l~~L~~L~L~~~n~l~~~---------------------------~~l~~----~~~~l~~L~~L~l~~n~ 247 (490)
+..+..++.+++|++|++++ |.++.+ ..+|. .+..+++|++|++++|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEY-NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTTTTCTTCCEEECCS-CCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCcccccCcccccEeeCCC-CccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 44444455555555555555 433210 01222 34556666666666666
Q ss_pred CCCccCccccCccccceeEccC----------------------------ccccccchhhHhhccccccccccccccccc
Q 011233 248 KLERLPDELGNSKALEELRVEG----------------------------AAIRERLPESLGQLALLCELKMIKCSSFES 299 (490)
Q Consensus 248 ~~~~~p~~~~~l~~L~~L~ls~----------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 299 (490)
+.+..+..+..+++|++|++++ |++++..|.++..+++|++|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 6665555555555555555544 344444455566666666666666666555
Q ss_pred cC-ccccCccccceeecccccccccCCcccCCccccceeeccCccccc---CCccccCCCCCCEEeCcCCCCCCCc-hhh
Q 011233 300 LP-SSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE---VPESLGQLSSIVRLDLSNNNLERTP-ASL 374 (490)
Q Consensus 300 ~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~p~~~~~l~~L~~L~Ls~n~l~~l~-~~l 374 (490)
+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+.. +|..+..+++|++|++++|+++.+| ..+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 44 455666666666666666666666666667777777777776653 6777888888888888888888775 457
Q ss_pred hccCCCCEEecCCCCCc------------------cccccccccccCCcccchhhhhhhhccccceeeecCeee----ec
Q 011233 375 YQLSSIKYLKLFDNNFK------------------HRLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVC----IS 432 (490)
Q Consensus 375 ~~l~~L~~L~ls~n~~~------------------~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 432 (490)
..+++|++|++++|++. ..+..++++.|.+.......+..--....+++..+.... ..
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 78888999999888764 234556666665543222211111011111221111111 12
Q ss_pred cchhhhcccccceeeeEeccccccccccccceeeeecccc---ccCCCCcEEEE
Q 011233 433 LGMKFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIG---NSNPKDFFTLI 483 (490)
Q Consensus 433 ~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~---~~~~~~~~~~~ 483 (490)
...+.++.|++++|++++..|+.+.....+++.++++.+. .+....||..|
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence 3457788899999999998777665466788888888544 44322444444
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.2e-44 Score=377.57 Aligned_cols=431 Identities=17% Similarity=0.109 Sum_probs=343.8
Q ss_pred cccCCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEecCCCCCCCCCC-Cccc
Q 011233 18 VSSLEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYIDLSHSESLTKLP-DLSL 91 (490)
Q Consensus 18 ~~~~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~ 91 (490)
..+|.++ ++.+++|++++|.++++ +..+++|++|++++|.++.+ |..|.++++|++|++++|.+.+..| .++.
T Consensus 25 ~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 25 NEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred ccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 4455554 35899999999999988 78899999999999999987 5889999999999999999888777 8999
Q ss_pred CCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCC-cCCcccccCCccEEeecCCCCCCCCcccccchhhhhh--
Q 011233 92 ARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLG-SLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLS-- 168 (490)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~-- 168 (490)
+++|++|++++|.+.+..+..++++++|++|++++|.+.+ ..|....+++|++|++++|.+.+..+..+..+. .|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~l 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-QATNL 182 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-TCCSE
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-cccee
Confidence 9999999999999988878889999999999999998666 345555599999999999998877776665554 444
Q ss_pred ---hhhccCCcCCccccccc----------------------------------------------------cCcEEEec
Q 011233 169 ---LIKVGIKELPSSIECLS----------------------------------------------------KLDRLSIQ 193 (490)
Q Consensus 169 ---~~~~~~~~lp~~~~~l~----------------------------------------------------~L~~L~L~ 193 (490)
..++.+..++....... +|+.|+++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 22344444432211111 67788888
Q ss_pred cCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCcccc
Q 011233 194 DCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIR 273 (490)
Q Consensus 194 ~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~ 273 (490)
+|.+.+..+..|..+++|++|++++ +.+ ..+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~-n~l---~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTA-THL---SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTT-SCC---SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred cCccCccCHHHhccccCCCEEeccC-Ccc---CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 8877777777788999999999999 777 578888888999999999999888887888889999999999999888
Q ss_pred ccchh-hHhhcccccccccccccccccc--CccccCccccceeecccccccccCCcccCCccccceeeccCcccccC-C-
Q 011233 274 ERLPE-SLGQLALLCELKMIKCSSFESL--PSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREV-P- 348 (490)
Q Consensus 274 ~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-p- 348 (490)
+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|++|++++|++++. |
T Consensus 339 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp CBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC
T ss_pred cccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc
Confidence 65655 5888999999999998887765 77788999999999999998888888899999999999999999883 3
Q ss_pred ccccCCCCCCEEeCcCCCCCCC-chhhhccCCCCEEecCCCCCccc-------------cccccccccCCcccchhhhhh
Q 011233 349 ESLGQLSSIVRLDLSNNNLERT-PASLYQLSSIKYLKLFDNNFKHR-------------LLTLSVDLNLVPNVLSEIIND 414 (490)
Q Consensus 349 ~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n~~~~~-------------l~~l~~~~n~~~~~~~~~~~~ 414 (490)
..+..+++|++|++++|.++.. |..+..+++|++|++++|++.+. +..++++.|.+ .+..+.
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~~ 494 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL----SSIDQH 494 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC----CEECTT
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc----CccChh
Confidence 4588899999999999999865 67788899999999999987542 22233333311 111111
Q ss_pred hhccccceeeecCeeeeccchhhhcccccceeeeEeccccccccccccceeeeeccccccCC
Q 011233 415 RWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGNSNP 476 (490)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~~~~ 476 (490)
.....+.++.||+++|++++..|+++.. ...+ +++++.+.....
T Consensus 495 ----------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 495 ----------------AFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGI-YLNLASNHISII 538 (606)
T ss_dssp ----------------TTTTCTTCCEEECCSSCCCGGGGGGGTT-CCSC-EEECCSSCCCCC
T ss_pred ----------------hhccccCCCEEECCCCccCcCChhHhCc-cccc-EEECcCCccccc
Confidence 1223678889999999999998888754 4556 888887766554
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-44 Score=376.50 Aligned_cols=418 Identities=15% Similarity=0.081 Sum_probs=250.8
Q ss_pred Cccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEec
Q 011233 27 TEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDL 100 (490)
Q Consensus 27 ~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L 100 (490)
+++++|++++|.++++ +..+++|++|++++|.++++ |..|.++++|++|++++|.+.+..| .|+.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 4555555555555555 44555555555555555554 2445555555555555555554444 4555555555555
Q ss_pred CCCCCCcccchhhhccccCcEEEccCCCCCC-cCCcccc-cCCccEEeecCCCCCCCCcccccchhh------hhhhhhc
Q 011233 101 GSCSSLTETHSSIQYLNKLEVLDLRHCESLG-SLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIP------LLSLIKV 172 (490)
Q Consensus 101 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~------~L~~~~~ 172 (490)
++|.+.+..+..++++++|++|++++|.+.+ .+|..+. +++|++|++++|.+.+..+..+..+.. .+....+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 5555555444555555555555555555433 3455554 555555555555555444433332220 1111112
Q ss_pred cCCcCCcc------------------------------------------------------------------------
Q 011233 173 GIKELPSS------------------------------------------------------------------------ 180 (490)
Q Consensus 173 ~~~~lp~~------------------------------------------------------------------------ 180 (490)
.+..++..
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence 33333322
Q ss_pred ---------ccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCc
Q 011233 181 ---------IECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLER 251 (490)
Q Consensus 181 ---------~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~ 251 (490)
+..+++|+.|++++|.+. .++ .+..+++|++|++++ +.+ +.+| .+ .+++|++|++++|...+.
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~-n~l---~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIR-CQL---KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEES-CCC---SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEccc-ccC---cccc-cC-CCCccceeeccCCcCccc
Confidence 333445555555554442 233 455566666666666 454 4455 23 666677777766654443
Q ss_pred cCccccCccccceeEccCcccccc--chhhHhhccccccccccccccccccCccccCccccceeecccccccccCC-ccc
Q 011233 252 LPDELGNSKALEELRVEGAAIRER--LPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLP-NEL 328 (490)
Q Consensus 252 ~p~~~~~l~~L~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~ 328 (490)
. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 3 355677788888888777764 26677778888888888776544 55667777888888888887777666 567
Q ss_pred CCccccceeeccCccccc-CCccccCCCCCCEEeCcCCCCCC--CchhhhccCCCCEEecCCCCCcccc----------c
Q 011233 329 GNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLER--TPASLYQLSSIKYLKLFDNNFKHRL----------L 395 (490)
Q Consensus 329 ~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~ls~n~~~~~l----------~ 395 (490)
..+++|++|++++|.+++ .|..++.+++|++|++++|+++. +|..+..+++|++|++++|++.+.. .
T Consensus 421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 500 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500 (606)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCC
Confidence 778888888888888777 56777778888888888888774 4667777888888888888764322 2
Q ss_pred cccccccCCcccchhhhhhhhccccceeeecCeeeeccchhhhcccccceeeeEeccccccccccccceeeeeccccccC
Q 011233 396 TLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGNSN 475 (490)
Q Consensus 396 ~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~~~ 475 (490)
.++++.|. +.+..+..+ ...+.++.||+++|+++. +|.++.....++++++++.+.+..
T Consensus 501 ~L~Ls~N~----l~~~~~~~~----------------~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 501 LLNMSHNN----LLFLDSSHY----------------NQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EEECCSSC----CSCEEGGGT----------------TTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCC
T ss_pred EEECCCCc----CCCcCHHHc----------------cCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCccc
Confidence 23333331 122222222 225677889999999985 777776666678889888665544
Q ss_pred C
Q 011233 476 P 476 (490)
Q Consensus 476 ~ 476 (490)
-
T Consensus 560 ~ 560 (606)
T 3vq2_A 560 I 560 (606)
T ss_dssp S
T ss_pred C
Confidence 3
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-45 Score=383.12 Aligned_cols=400 Identities=13% Similarity=0.138 Sum_probs=294.4
Q ss_pred cccc---ccc-ccCCCCccEEEcCCCCccc-ccccccCCCCCCEEecCCCCC----------------------------
Q 011233 36 QFPL---ETL-NINGENLVSLKMPGRKVKQ-LWNDVRNLVNLKYIDLSHSES---------------------------- 82 (490)
Q Consensus 36 ~~~l---~~l-~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~Ls~n~~---------------------------- 82 (490)
.|.| .++ +..-.+++.|+|+++++.+ +|+.++++++|++|++++|.+
T Consensus 66 ~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l 145 (636)
T 4eco_A 66 LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145 (636)
T ss_dssp GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence 4566 666 4333677777777777764 667777777777777777732
Q ss_pred --------------------------------------------------CCCCC-CcccCCCCcEEecCCCCCCcc---
Q 011233 83 --------------------------------------------------LTKLP-DLSLARNLEILDLGSCSSLTE--- 108 (490)
Q Consensus 83 --------------------------------------------------~~~~~-~~~~l~~L~~L~L~~n~~~~~--- 108 (490)
.+ +| .++++++|++|++++|.+.+.
T Consensus 146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~ 224 (636)
T 4eco_A 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC 224 (636)
T ss_dssp HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccc
Confidence 12 45 577788888888888877764
Q ss_pred --------------cchhhh--ccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCC-CCC-CCcccccchh-----
Q 011233 109 --------------THSSIQ--YLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCS-KLK-NHPAISSSLI----- 164 (490)
Q Consensus 109 --------------~~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~-~~~-~~~~~~~~~~----- 164 (490)
+|..++ ++++|++|++++|.+.+.+|..+. +++|++|++++|. +.+ .+|..+..+.
T Consensus 225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l 304 (636)
T 4eco_A 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304 (636)
T ss_dssp SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence 777777 888888888888877777887777 7888888888887 666 6666554431
Q ss_pred hhhhhhh---ccCCcCCc--cccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCC-C
Q 011233 165 PLLSLIK---VGIKELPS--SIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKS-L 238 (490)
Q Consensus 165 ~~L~~~~---~~~~~lp~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~-L 238 (490)
+.|+.++ +.+..+|. .++.+++|++|++++|.+.|.+| .++.+++|++|++++ |.+ ..+|..+..+++ |
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~-N~l---~~lp~~l~~l~~~L 379 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY-NQI---TEIPANFCGFTEQV 379 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS-SEE---EECCTTSEEECTTC
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC-Ccc---ccccHhhhhhcccC
Confidence 2344333 66667887 78888899999999988888888 788888899999988 777 577888888888 9
Q ss_pred cEEEccCCCCCCccCccccCcc--ccceeEccCccccccchhhHh-------hccccccccccccccccccCccccCccc
Q 011233 239 ASLEIINCPKLERLPDELGNSK--ALEELRVEGAAIRERLPESLG-------QLALLCELKMIKCSSFESLPSSLCMLKY 309 (490)
Q Consensus 239 ~~L~l~~n~~~~~~p~~~~~l~--~L~~L~ls~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 309 (490)
++|++++|.+. .+|..+..++ +|++|++++|.+++..|..+. .+++|++|++++|.+.+..+..+..+++
T Consensus 380 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 380 ENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp CEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred cEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCC
Confidence 99999988776 7787776654 889999999998887787777 7778899999888877433334456888
Q ss_pred cceeecccccccccCCccc-CC-------ccccceeeccCcccccCCcccc--CCCCCCEEeCcCCCCCCCchhhhccCC
Q 011233 310 LTSLAIIDCKNFKRLPNEL-GN-------LKCLVVLIVKGTAIREVPESLG--QLSSIVRLDLSNNNLERTPASLYQLSS 379 (490)
Q Consensus 310 L~~L~Ls~n~~~~~~~~~~-~~-------l~~L~~L~L~~n~l~~~p~~~~--~l~~L~~L~Ls~n~l~~l~~~l~~l~~ 379 (490)
|++|++++|++. .+|... .. +++|+.|++++|+++.+|..+. .+++|++|++++|+++++|..+..+++
T Consensus 459 L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~ 537 (636)
T 4eco_A 459 LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSST 537 (636)
T ss_dssp CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSS
T ss_pred CCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCC
Confidence 999999998877 555433 22 2388999999999888887776 888999999999999888888888999
Q ss_pred CCEEecCCCCCccccccccccccCCcccchhhhhhhhccccceeeecCeeeeccchhhhcccccceeeeEeccccccccc
Q 011233 380 IKYLKLFDNNFKHRLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRM 459 (490)
Q Consensus 380 L~~L~ls~n~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~ 459 (490)
|++|++++|+. ++.| .+.+.++..+.. .+.++.|++++|++ +.+|..+.
T Consensus 538 L~~L~Ls~N~~--------ls~N----~l~~~~p~~l~~----------------l~~L~~L~Ls~N~l-~~ip~~~~-- 586 (636)
T 4eco_A 538 LKGFGIRNQRD--------AQGN----RTLREWPEGITL----------------CPSLTQLQIGSNDI-RKVNEKIT-- 586 (636)
T ss_dssp CCEEECCSCBC--------TTCC----BCCCCCCTTGGG----------------CSSCCEEECCSSCC-CBCCSCCC--
T ss_pred CCEEECCCCcc--------cccC----cccccChHHHhc----------------CCCCCEEECCCCcC-CccCHhHh--
Confidence 99999977751 1222 222222222221 55677788888888 66777754
Q ss_pred cccceeeeeccccccC
Q 011233 460 TGNATCLMCSVIGNSN 475 (490)
Q Consensus 460 ~~~~~~l~~s~~~~~~ 475 (490)
..++.|+++.+....
T Consensus 587 -~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 587 -PNISVLDIKDNPNIS 601 (636)
T ss_dssp -TTCCEEECCSCTTCE
T ss_pred -CcCCEEECcCCCCcc
Confidence 578888888765443
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-42 Score=367.48 Aligned_cols=323 Identities=14% Similarity=0.186 Sum_probs=205.5
Q ss_pred cccccccCCCCCCEEecCCCCCCCC-----------------CC-Ccc--cCCCCcEEecCCCCCCcccchhhhccccCc
Q 011233 61 QLWNDVRNLVNLKYIDLSHSESLTK-----------------LP-DLS--LARNLEILDLGSCSSLTETHSSIQYLNKLE 120 (490)
Q Consensus 61 ~l~~~~~~l~~L~~L~Ls~n~~~~~-----------------~~-~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 120 (490)
++|+.++++++|++|++++|.+.+. +| .++ .+++|++|++++|.+.+.+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 3444555555555555555554442 33 444 555555555555555555555555555555
Q ss_pred EEEccCCC-CCC-cCCcccc-c------CCccEEeecCCCCCCCCcc--cccchhhhhhhhh---ccCC-cCCccccccc
Q 011233 121 VLDLRHCE-SLG-SLPTSIH-S------KYIEELDFVGCSKLKNHPA--ISSSLIPLLSLIK---VGIK-ELPSSIECLS 185 (490)
Q Consensus 121 ~L~Ls~n~-~~~-~~p~~~~-l------~~L~~L~ls~n~~~~~~~~--~~~~~~~~L~~~~---~~~~-~lp~~~~~l~ 185 (490)
+|++++|+ +.+ .+|..+. + ++|++|++++|.+. .+|. .+..+. .|+.++ +.+. .+| .+..++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCC
Confidence 55555554 444 4554443 2 55555555555544 4444 333333 333332 3444 556 667777
Q ss_pred cCcEEEeccCCCcccccccccCCCC-CCEEecccCCCCCCCCCCCcccccCC--CCcEEEccCCCCCCccCcccc-----
Q 011233 186 KLDRLSIQDCTRLENISSSIFKLKS-LQYIEIKRCSNLKSLESLPNNLCMFK--SLASLEIINCPKLERLPDELG----- 257 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~L~~~n~l~~~~~l~~~~~~l~--~L~~L~l~~n~~~~~~p~~~~----- 257 (490)
+|++|++++|.+. .+|..+..+++ |++|++++ |.+ ..+|..+...+ +|++|++++|.+.+..|..+.
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~l---~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH-NKL---KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCS-SCC---SSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccC-CcC---cccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 8888888887666 66777777777 88888887 666 45666665543 788888888877777777666
Q ss_pred --CccccceeEccCccccccchh-hHhhccccccccccccccccccCcccc-C-------ccccceeecccccccccCCc
Q 011233 258 --NSKALEELRVEGAAIRERLPE-SLGQLALLCELKMIKCSSFESLPSSLC-M-------LKYLTSLAIIDCKNFKRLPN 326 (490)
Q Consensus 258 --~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~-~-------l~~L~~L~Ls~n~~~~~~~~ 326 (490)
.+++|++|++++|++++ +|. .+..+++|++|++++|.+. .+|..+. . +++|++|++++|++. .+|.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 66778888888888876 444 4455778888888887766 4444332 2 227888888888766 5666
Q ss_pred ccC--CccccceeeccCcccccCCccccCCCCCCEEeCc------CCCCC-CCchhhhccCCCCEEecCCCCCccccc
Q 011233 327 ELG--NLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLS------NNNLE-RTPASLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 327 ~~~--~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls------~n~l~-~l~~~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
.+. .+++|+.|++++|+++++|..+..+++|++|+++ +|++. .+|..+..+++|++|++++|++ +.++
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 665 7788888888888888777777778888888884 45554 5677777788888888888876 4443
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.7e-41 Score=362.42 Aligned_cols=455 Identities=17% Similarity=0.139 Sum_probs=289.0
Q ss_pred ccccCCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEecCCCCCCCCCC-Ccc
Q 011233 17 MVSSLEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYIDLSHSESLTKLP-DLS 90 (490)
Q Consensus 17 ~~~~~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~ 90 (490)
...+|.+++ +++++|++++|.++++ +..+++|++|++++|.++++ |..++++++|++|++++|.+.+..+ .|+
T Consensus 16 L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 16 LTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 344565554 7999999999999888 77899999999999999987 5788999999999999999776655 699
Q ss_pred cCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccch--h--h
Q 011233 91 LARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSL--I--P 165 (490)
Q Consensus 91 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~--~--~ 165 (490)
.+++|++|++++|.+.+..|..|+++++|++|++++|.+.+..|..+. +++|++|++++|.+.+..+..+... . +
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 999999999999999887788999999999999999998777777776 9999999999999887766544321 1 1
Q ss_pred hhhhhhccCCcCC-cccccc---------------------------ccCcEEEeccCCCcccccccccCCCC--CCEEe
Q 011233 166 LLSLIKVGIKELP-SSIECL---------------------------SKLDRLSIQDCTRLENISSSIFKLKS--LQYIE 215 (490)
Q Consensus 166 ~L~~~~~~~~~lp-~~~~~l---------------------------~~L~~L~L~~n~~~~~~~~~~~~l~~--L~~L~ 215 (490)
.|.+..+.+..++ ..+..+ ++|+.|++++|.+.+..+..+..++. |++|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 3333345555554 334333 56788888888888888888887754 99999
Q ss_pred cccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccC---------------------------------cccc
Q 011233 216 IKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGN---------------------------------SKAL 262 (490)
Q Consensus 216 L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~---------------------------------l~~L 262 (490)
+++ |.++ +..|..++.+++|++|++++|.+.+..|..+.. +++|
T Consensus 255 Ls~-n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 255 LSY-NNLN--VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp CTT-SCCC--EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred CCC-CCcC--ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 999 7775 445677888999999999998877665554444 4555
Q ss_pred ceeEccCccccccchhhHhhcccccccccccccc----------------------------ccccCccccCccccceee
Q 011233 263 EELRVEGAAIRERLPESLGQLALLCELKMIKCSS----------------------------FESLPSSLCMLKYLTSLA 314 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~----------------------------~~~~~~~~~~l~~L~~L~ 314 (490)
++|++++|.+++..+..+..+++|++|++++|.. .+..|..+..+++|+.|+
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 5555555666554455555555555555554431 122223333344444444
Q ss_pred cccccccccCC-cccCCccccceeeccCcccccC-CccccCCCCCCEEeCcCCCCC---CCchhhhccCCCCEEecCCCC
Q 011233 315 IIDCKNFKRLP-NELGNLKCLVVLIVKGTAIREV-PESLGQLSSIVRLDLSNNNLE---RTPASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 315 Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~ls~n~ 389 (490)
+++|++.+.+| ..+.++++|++|++++|++.++ +..+..+++|++|++++|.++ .+|..+..+++|++|++++|+
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 44444333332 2344444444444444444442 234444445555555554443 335556666666667766665
Q ss_pred Cc----------cccccccccccCCcccchhhhhhh----hc---ccc-ceeeecCeee----eccchhhhcccccceee
Q 011233 390 FK----------HRLLTLSVDLNLVPNVLSEIINDR----WR---KLS-FHVKVGSRVC----ISLGMKFQSGLGIKHFQ 447 (490)
Q Consensus 390 ~~----------~~l~~l~~~~n~~~~~~~~~~~~~----~~---~~~-~~~~~~~~~~----~~~~~~~~~~l~ls~n~ 447 (490)
+. ..+..++++.|.+.......++.. +. .+. .++..+.... ...+.+.++.||+++|+
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC
Confidence 42 233445555554333211111100 00 000 0111111111 12334566667777777
Q ss_pred eEeccccccccccccceeeeeccccccCC
Q 011233 448 FQTALGRKVWRMTGNATCLMCSVIGNSNP 476 (490)
Q Consensus 448 ~~~~~p~~~~~~~~~~~~l~~s~~~~~~~ 476 (490)
+++ +|...+.....++.|+++.+.....
T Consensus 572 l~~-l~~~~~~~l~~L~~L~L~~N~l~~~ 599 (680)
T 1ziw_A 572 LNT-LPASVFNNQVSLKSLNLQKNLITSV 599 (680)
T ss_dssp CCC-CCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred CCc-CCHhHhCCCCCCCEEECCCCcCCcc
Confidence 775 4444445556777777776544433
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.9e-42 Score=359.76 Aligned_cols=380 Identities=16% Similarity=0.130 Sum_probs=238.4
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEE
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYI 75 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L 75 (490)
+++|+|+++++. .....+..+ .+++|++|++++|.++++ +..+++|++|++++|.++++ |..|+++++|++|
T Consensus 32 ~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNP--LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCC--cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 468888888832 222233355 788999999999988877 67788999999999988887 6788889999999
Q ss_pred ecCCCCCCCCCC-CcccCCCCcEEecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcCCcccc-c-------------
Q 011233 76 DLSHSESLTKLP-DLSLARNLEILDLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-S------------- 139 (490)
Q Consensus 76 ~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l------------- 139 (490)
++++|.+.+..+ .++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..+. +
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 999888777665 78888899999999888776 5688888888899888888876554444333 2
Q ss_pred --------------CCccEEeecCCCCCCC--------------------------------------------------
Q 011233 140 --------------KYIEELDFVGCSKLKN-------------------------------------------------- 155 (490)
Q Consensus 140 --------------~~L~~L~ls~n~~~~~-------------------------------------------------- 155 (490)
.+|+.|++++|...+.
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 2455555555543210
Q ss_pred --------Ccccccchhhhhhhh---hccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccC-----
Q 011233 156 --------HPAISSSLIPLLSLI---KVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRC----- 219 (490)
Q Consensus 156 --------~~~~~~~~~~~L~~~---~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~----- 219 (490)
.|. +..+ +.|+.+ ++.+..+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|
T Consensus 270 ~~~~~~~~~~~-~~~l-~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVK-FHCL-ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGS-CGGG-TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccc-cccC-CCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccc
Confidence 000 0000 112222 24445555 566666677777777665 55552 3 4455555555442
Q ss_pred ----------------CCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccch-hhHhh
Q 011233 220 ----------------SNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLP-ESLGQ 282 (490)
Q Consensus 220 ----------------n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~ 282 (490)
|.++..+..|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.+..| ..+..
T Consensus 344 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 3433212234455555566666666554332 44555566666666666666665444 35566
Q ss_pred ccccccccccccccccccCccccCccccceeecccccccc-cCCcccCCccccceeeccCccccc-CCccccCCCCCCEE
Q 011233 283 LALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFK-RLPNELGNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRL 360 (490)
Q Consensus 283 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L 360 (490)
+++|++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..++.+++|++|++++|++++ .|..++.+++|++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 6666666666666666566666666666666666666555 255566666666666666666666 34556666666666
Q ss_pred eCcCCCCCCC-chhhhccCCCCEEecCCCCC
Q 011233 361 DLSNNNLERT-PASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 361 ~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n~~ 390 (490)
++++|+++.+ |..+..+++|++|++++|++
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 6666666654 55566666666666666654
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-42 Score=374.12 Aligned_cols=347 Identities=12% Similarity=0.146 Sum_probs=216.2
Q ss_pred CcccCCCCcEEecCCCCCCc-----------------ccchhhh--ccccCcEEEccCCCCCCcCCcccc-cCCccEEee
Q 011233 88 DLSLARNLEILDLGSCSSLT-----------------ETHSSIQ--YLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDF 147 (490)
Q Consensus 88 ~~~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~l 147 (490)
.++.+++|++|+|++|.+.+ .+|..++ ++++|++|++++|.+.+.+|..+. +++|+.|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 56666667777777666665 2666655 666677777766666666666665 666777777
Q ss_pred cCCC-CCC-CCcccccchh------h---hhhhhhccCCcCCc--cccccccCcEEEeccCCCcccccccccCCCCCCEE
Q 011233 148 VGCS-KLK-NHPAISSSLI------P---LLSLIKVGIKELPS--SIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYI 214 (490)
Q Consensus 148 s~n~-~~~-~~~~~~~~~~------~---~L~~~~~~~~~lp~--~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 214 (490)
++|+ +.+ .+|..+..+. + .|.+..+.+..+|. .+..+++|+.|++++|.+. .+| .++.+++|+.|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L 600 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL 600 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence 6665 554 4554433221 1 22222245556666 6777777777777777666 666 67777777777
Q ss_pred ecccCCCCCCCCCCCcccccCCC-CcEEEccCCCCCCccCccccCccc--cceeEccCccccccchhh---Hh--hcccc
Q 011233 215 EIKRCSNLKSLESLPNNLCMFKS-LASLEIINCPKLERLPDELGNSKA--LEELRVEGAAIRERLPES---LG--QLALL 286 (490)
Q Consensus 215 ~L~~~n~l~~~~~l~~~~~~l~~-L~~L~l~~n~~~~~~p~~~~~l~~--L~~L~ls~n~l~~~~~~~---~~--~l~~L 286 (490)
++++ |.+ ..+|..+..+++ |++|++++|.+. .+|..+..++. |+.|++++|++.+.+|.. +. .+++|
T Consensus 601 ~Ls~-N~l---~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 601 KLDY-NQI---EEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ECCS-SCC---SCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ECcC-Ccc---ccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 7777 666 456666777776 777777777655 56666655543 777777777776644421 22 23467
Q ss_pred ccccccccccccccCccc-cCccccceeecccccccccCCcccCC--------ccccceeeccCcccccCCcccc--CCC
Q 011233 287 CELKMIKCSSFESLPSSL-CMLKYLTSLAIIDCKNFKRLPNELGN--------LKCLVVLIVKGTAIREVPESLG--QLS 355 (490)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~~~~~--------l~~L~~L~L~~n~l~~~p~~~~--~l~ 355 (490)
+.|++++|.+. .+|..+ ..+++|+.|++++|++. .+|..+.. +++|+.|++++|+++.+|..+. .++
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 77777776666 444433 36677777777777655 44443322 2377777777777777776665 777
Q ss_pred CCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCccccccccccccCCcccchhhhhhhhccccceeeecCeeeeccch
Q 011233 356 SIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKHRLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGM 435 (490)
Q Consensus 356 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (490)
+|+.|+|++|+++.+|..+..+++|+.|++++|+ +++.| .+.+.+|..+. ..
T Consensus 754 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~--------~ls~N----~l~~~ip~~l~----------------~L 805 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR--------DAEGN----RILRQWPTGIT----------------TC 805 (876)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB--------CTTCC----BCCCCCCTTGG----------------GC
T ss_pred CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC--------Ccccc----cccccChHHHh----------------cC
Confidence 7777777777777777777777777777777765 12222 11222222221 14
Q ss_pred hhhcccccceeeeEeccccccccccccceeeeeccccccC
Q 011233 436 KFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGNSN 475 (490)
Q Consensus 436 ~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~~~ 475 (490)
+.++.|++++|++ +.+|..++ .+++.|+++.+....
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNIS 841 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCE
T ss_pred CCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCc
Confidence 5566777777777 66777654 467777777665443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=355.15 Aligned_cols=376 Identities=15% Similarity=0.152 Sum_probs=258.3
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc----ccCCCCccEEEcCCCCccccc-ccccCCCCCCEE
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYI 75 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L 75 (490)
+++++|+++++. .....+..+ .+++|++|++++|.++++ +..+++|++|++++|.++.++ ..|..+++|++|
T Consensus 28 ~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCC--CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCc--cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 357777777732 112223344 677888888888877766 566778888888888887765 667778888888
Q ss_pred ecCCCCCCCCCC-CcccCCCCcEEecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcCCcccc-cCCc----cEEeec
Q 011233 76 DLSHSESLTKLP-DLSLARNLEILDLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYI----EELDFV 148 (490)
Q Consensus 76 ~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L----~~L~ls 148 (490)
++++|.+.+..+ .++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..|..+. +++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 888877655544 57778888888888877766 4577788888888888888775554444454 5555 677777
Q ss_pred CCCCCCCCcccccchhhhhhhhh---------------------------------------------------------
Q 011233 149 GCSKLKNHPAISSSLIPLLSLIK--------------------------------------------------------- 171 (490)
Q Consensus 149 ~n~~~~~~~~~~~~~~~~L~~~~--------------------------------------------------------- 171 (490)
+|.+.+..+..+... .|+.++
T Consensus 186 ~n~l~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TCCCCEECTTTTTTC--EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCceecCHHHhccC--cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 776655444333211 011110
Q ss_pred -----ccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCC
Q 011233 172 -----VGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINC 246 (490)
Q Consensus 172 -----~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n 246 (490)
...+.+|..+..+++|+.|++++|.+. .+|..+..+ +|++|++++ +.+ ..+|. ..+++|++|++++|
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~-n~~---~~l~~--~~l~~L~~L~l~~n 335 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVN-CKF---GQFPT--LKLKSLKRLTFTSN 335 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEES-CBC---SSCCB--CBCSSCCEEEEESC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeecc-Ccc---cccCc--ccccccCEEeCcCC
Confidence 011234455667788888888887665 467767777 888888888 666 44554 36777888888777
Q ss_pred CCCCccCccccCccccceeEccCccccccc--hhhHhhccccccccccccccccccCccccCccccceeecccccccccC
Q 011233 247 PKLERLPDELGNSKALEELRVEGAAIRERL--PESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRL 324 (490)
Q Consensus 247 ~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 324 (490)
...+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..
T Consensus 336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCT
T ss_pred cccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcccccc
Confidence 66655554 56778888888888777633 56777788888888888776655444 777778888888888776665
Q ss_pred C-cccCCccccceeeccCccccc-CCccccCCCCCCEEeCcCCCCC--CCchhhhccCCCCEEecCCCCCcc
Q 011233 325 P-NELGNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLE--RTPASLYQLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 325 ~-~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~ls~n~~~~ 392 (490)
+ ..+..+++|++|++++|.+.+ .|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence 5 456777888888888887777 5567777888888888888776 467777778888888888887543
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-41 Score=364.68 Aligned_cols=433 Identities=15% Similarity=0.088 Sum_probs=260.9
Q ss_pred CCCccceeeecccccccc----ccCCCCccEEEcCCCCc-ccc-cccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcE
Q 011233 25 PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKV-KQL-WNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEI 97 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i-~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~ 97 (490)
.++++++|++++|.++++ +..+++|++|+|++|.. ..+ |..|.++++|++|+|++|.+.+..| .|..+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 557888888888887776 67788888888888844 345 5677888888888888888777666 7788888888
Q ss_pred EecCCCCCCcccchh--hhccccCcEEEccCCCCCCcCC-cccc-cCCccEEeecCCCCCCCCcccccchh-hhhhhhh-
Q 011233 98 LDLGSCSSLTETHSS--IQYLNKLEVLDLRHCESLGSLP-TSIH-SKYIEELDFVGCSKLKNHPAISSSLI-PLLSLIK- 171 (490)
Q Consensus 98 L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~~~~~~p-~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~-~~L~~~~- 171 (490)
|++++|.+.+..|.. ++++++|++|++++|.+.+..+ ..+. +++|++|++++|.+.+..+..+..+. +.|+.++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 888888777765554 7788888888888887655444 3444 78888888888877776666554431 1344333
Q ss_pred --ccCC-cCCccccccc------cCcEEEeccCCCcccccccccC-----------------------------------
Q 011233 172 --VGIK-ELPSSIECLS------KLDRLSIQDCTRLENISSSIFK----------------------------------- 207 (490)
Q Consensus 172 --~~~~-~lp~~~~~l~------~L~~L~L~~n~~~~~~~~~~~~----------------------------------- 207 (490)
+.+. ..|..+..++ .|+.|++++|.+.+..+..+..
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 2222 2333344443 3999999998776655443322
Q ss_pred ---CCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcc
Q 011233 208 ---LKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLA 284 (490)
Q Consensus 208 ---l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 284 (490)
.++|+.|++++ |.+. +..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..++
T Consensus 262 ~l~~~~L~~L~Ls~-n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 262 GLARSSVRHLDLSH-GFVF--SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTSCCCEEECTT-CCCC--EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred ccccCCccEEECCC-Cccc--ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 14566666666 5554 33455566667777777777666666666666677777777777777665566666677
Q ss_pred ccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCcc--------------
Q 011233 285 LLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPES-------------- 350 (490)
Q Consensus 285 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~-------------- 350 (490)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+. ..+++|+.|++++|+++.+|..
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccccccccceeecccCcc
Confidence 777777777666555555666667777777777665431 2244555555555555554432
Q ss_pred --------ccCCCCCCEEeCcCCCCCCCch--hhhccCCCCEEecCCCCCc---------------cccccccccccCCc
Q 011233 351 --------LGQLSSIVRLDLSNNNLERTPA--SLYQLSSIKYLKLFDNNFK---------------HRLLTLSVDLNLVP 405 (490)
Q Consensus 351 --------~~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~ls~n~~~---------------~~l~~l~~~~n~~~ 405 (490)
+..+++|++|++++|+++.++. .+..+++|++|++++|.+. ..+..++++.|
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N--- 490 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN--- 490 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH---
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC---
Confidence 2244455555555555543321 1233455555555555432 22333444443
Q ss_pred ccchhhhhhhhccc----cceeeecCeeeec--cchhhhcccccceeeeEeccccccccccccceeeeeccccc
Q 011233 406 NVLSEIINDRWRKL----SFHVKVGSRVCIS--LGMKFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGN 473 (490)
Q Consensus 406 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~ 473 (490)
.+.+..+..+... .+++..+...... ...+.++.||+++|++++.+|+.+. .+++++++.+.+
T Consensus 491 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~----~L~~l~l~~Np~ 559 (844)
T 3j0a_A 491 -YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFV----SLSVLDITHNKF 559 (844)
T ss_dssp -HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCS----SCCEEEEEEECC
T ss_pred -cccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhC----CcCEEEecCCCc
Confidence 2222222222111 1122211111111 1125677788888888887776652 566777775443
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-41 Score=366.88 Aligned_cols=439 Identities=15% Similarity=0.099 Sum_probs=329.2
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeeccccc-ccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCE
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPL-ETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKY 74 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l-~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~ 74 (490)
++||+|+++++. .....+..+ .+++|++|++++|.. ..+ +..+++|++|+|++|.+.++ |..|.++++|++
T Consensus 24 ~~l~~LdLs~N~--i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNY--IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCC--CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCcCEEECCCCc--CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 678999999943 223345666 899999999999943 333 78899999999999999986 688999999999
Q ss_pred EecCCCCCCCCCC-C--cccCCCCcEEecCCCCCCcccc-hhhhccccCcEEEccCCCCCCcCCcccc-c--CCccEEee
Q 011233 75 IDLSHSESLTKLP-D--LSLARNLEILDLGSCSSLTETH-SSIQYLNKLEVLDLRHCESLGSLPTSIH-S--KYIEELDF 147 (490)
Q Consensus 75 L~Ls~n~~~~~~~-~--~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l--~~L~~L~l 147 (490)
|++++|.+.+.++ . +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+. + ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 9999999887655 3 8899999999999998887655 6789999999999999987777777666 4 78888888
Q ss_pred cCCCCCCCCcccccchhh-----hhhhhh---ccCC-cCCc------------------------------------ccc
Q 011233 148 VGCSKLKNHPAISSSLIP-----LLSLIK---VGIK-ELPS------------------------------------SIE 182 (490)
Q Consensus 148 s~n~~~~~~~~~~~~~~~-----~L~~~~---~~~~-~lp~------------------------------------~~~ 182 (490)
++|.+.+..|..+..+.. .|+.++ +.+. .++. .+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 888777766554433220 122222 2111 1111 122
Q ss_pred c--cccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcc
Q 011233 183 C--LSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSK 260 (490)
Q Consensus 183 ~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 260 (490)
. .++|+.|++++|.+.+..+..+..+++|+.|++++ |.++ +..|..+..+++|++|++++|.+.+..|..+..++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKIN--KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCC--EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCC--CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 2 26899999999999988888899999999999999 8886 55677899999999999999999888899999999
Q ss_pred ccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCc--------------
Q 011233 261 ALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPN-------------- 326 (490)
Q Consensus 261 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~-------------- 326 (490)
+|++|++++|.+++..+..|..+++|++|++++|.+.+. ..+++|+.|++++|++.. +|.
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKINLTANLIHLSENR 412 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCCCTTCCEEECCSCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-ccccccccceeecccCc
Confidence 999999999999987777899999999999999887642 225667777776666542 222
Q ss_pred --------ccCCccccceeeccCcccccCC--ccccCCCCCCEEeCcCCCCCCC------chhhhccCCCCEEecCCCCC
Q 011233 327 --------ELGNLKCLVVLIVKGTAIREVP--ESLGQLSSIVRLDLSNNNLERT------PASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 327 --------~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~~L~Ls~n~l~~l------~~~l~~l~~L~~L~ls~n~~ 390 (490)
.+.++++|+.|++++|++++++ ..+..+++|++|++++|.++.+ +..+..+++|++|++++|++
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 2457899999999999999854 3466789999999999999733 35577899999999999975
Q ss_pred c----------cccccccccccCCcccchhhhhhhhccccceeeecCeeee-ccchhhhcccccceeeeEeccc
Q 011233 391 K----------HRLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCI-SLGMKFQSGLGIKHFQFQTALG 453 (490)
Q Consensus 391 ~----------~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ls~n~~~~~~p 453 (490)
. ..+..++++.|.+........+...+.+.+. .+..... ......++.+++++|.+.+.-+
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls--~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDIS--RNQLLAPNPDVFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEE--EECCCCCCSCCCSSCCEEEEEEECCCCSSS
T ss_pred cccChhHccchhhhheeECCCCCCCccChhhhhccccEEECC--CCcCCCCChhHhCCcCEEEecCCCcccccc
Confidence 3 4556677888866554444333222222222 1111111 1123467889999999987544
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=348.78 Aligned_cols=389 Identities=19% Similarity=0.196 Sum_probs=263.9
Q ss_pred CCcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc----ccCCCCccEEEcCCCCcccccc-cccCCCCCCE
Q 011233 1 MTELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLWN-DVRNLVNLKY 74 (490)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~ 74 (490)
+++||+|+++++. .....+..+ .+++|++|++++|.++++ +..+++|++|++++|.++.++. .++++++|++
T Consensus 51 l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 51 FPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp CSSCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred CCCceEEECCCCc--CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 5789999999943 222234456 799999999999999877 7889999999999999999874 6899999999
Q ss_pred EecCCCCCCC-CCC-CcccCCCCcEEecCCCCCCcccchhhhccccC----cEEEccCCCCCCcCCcccccCCccEEeec
Q 011233 75 IDLSHSESLT-KLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKL----EVLDLRHCESLGSLPTSIHSKYIEELDFV 148 (490)
Q Consensus 75 L~Ls~n~~~~-~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls 148 (490)
|++++|.+.+ .+| .++.+++|++|++++|.+.+..+..++.+++| ++|++++|.+.+..|..+...+|+.|+++
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 9999999876 456 89999999999999999988888899999998 89999999866655555554477777777
Q ss_pred CCCCC----------------------------------------------------------CCCcccccchhhhhhhh
Q 011233 149 GCSKL----------------------------------------------------------KNHPAISSSLIPLLSLI 170 (490)
Q Consensus 149 ~n~~~----------------------------------------------------------~~~~~~~~~~~~~L~~~ 170 (490)
+|... +..+..+..+. .|+.+
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L 287 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSF 287 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-TCSEE
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC-cccEE
Confidence 65211 11122222222 33333
Q ss_pred h---ccCCcCCccccccccCcEEEeccCCCccccccc--------------------ccCCCCCCEEecccCCCCCCCCC
Q 011233 171 K---VGIKELPSSIECLSKLDRLSIQDCTRLENISSS--------------------IFKLKSLQYIEIKRCSNLKSLES 227 (490)
Q Consensus 171 ~---~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~--------------------~~~l~~L~~L~L~~~n~l~~~~~ 227 (490)
+ +.+..+|..+..+ +|++|++++|.+. .+|.. ...+++|++|++++ +.++..+.
T Consensus 288 ~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~ 364 (570)
T 2z63_A 288 SLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NGLSFKGC 364 (570)
T ss_dssp EEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS-SCCBEEEE
T ss_pred EecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC-CccCcccc
Confidence 2 5556667666666 6777777666554 33321 13455566666665 45532222
Q ss_pred CCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccch-hhHhhccccccccccccccccccCccccC
Q 011233 228 LPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLP-ESLGQLALLCELKMIKCSSFESLPSSLCM 306 (490)
Q Consensus 228 l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 306 (490)
.+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 244555666666666666655443333 6666667777776666666433 35666667777777776666666666666
Q ss_pred ccccceeeccccccc-ccCCcccCCccccceeeccCcccccC-CccccCCCCCCEEeCcCCCCCCCc-hhhhccCCCCEE
Q 011233 307 LKYLTSLAIIDCKNF-KRLPNELGNLKCLVVLIVKGTAIREV-PESLGQLSSIVRLDLSNNNLERTP-ASLYQLSSIKYL 383 (490)
Q Consensus 307 l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L 383 (490)
+++|++|++++|++. +.+|..+..+++|++|++++|+++++ |..+..+++|++|++++|+++.+| ..+..+++|++|
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 677777777777665 45666666677777777777776663 566666777777777777766553 445666777777
Q ss_pred ecCCCCCcccccc
Q 011233 384 KLFDNNFKHRLLT 396 (490)
Q Consensus 384 ~ls~n~~~~~l~~ 396 (490)
++++|++.+..+.
T Consensus 524 ~l~~N~~~~~~~~ 536 (570)
T 2z63_A 524 WLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EecCCcccCCCcc
Confidence 7777766655543
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-40 Score=356.87 Aligned_cols=328 Identities=14% Similarity=0.160 Sum_probs=264.9
Q ss_pred CCcccccccccCCCCCCEEecCCCCCCC-----------------CCC-Ccc--cCCCCcEEecCCCCCCcccchhhhcc
Q 011233 57 RKVKQLWNDVRNLVNLKYIDLSHSESLT-----------------KLP-DLS--LARNLEILDLGSCSSLTETHSSIQYL 116 (490)
Q Consensus 57 n~i~~l~~~~~~l~~L~~L~Ls~n~~~~-----------------~~~-~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l 116 (490)
|+++++|..++++++|++|+|++|.+.+ .+| .++ .+++|++|++++|.+.+.+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444577778888888888888888777 255 655 88888888888888888888888888
Q ss_pred ccCcEEEccCCC-CCC-cCCcccc-c-------CCccEEeecCCCCCCCCcc--cccchhhhhhhhh---ccCCcCCccc
Q 011233 117 NKLEVLDLRHCE-SLG-SLPTSIH-S-------KYIEELDFVGCSKLKNHPA--ISSSLIPLLSLIK---VGIKELPSSI 181 (490)
Q Consensus 117 ~~L~~L~Ls~n~-~~~-~~p~~~~-l-------~~L~~L~ls~n~~~~~~~~--~~~~~~~~L~~~~---~~~~~lp~~~ 181 (490)
++|++|++++|+ +.+ .+|..+. + ++|++|++++|.+. .+|. .+..+. .|+.++ +.+..+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-KLGLLDCVHNKVRHLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT-TCCEEECTTSCCCBCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC-CCCEEECCCCCcccch-hh
Confidence 888888888887 666 6776554 4 48888888888877 6666 555544 444443 6677888 78
Q ss_pred cccccCcEEEeccCCCcccccccccCCCC-CCEEecccCCCCCCCCCCCcccccCC--CCcEEEccCCCCCCccCcc---
Q 011233 182 ECLSKLDRLSIQDCTRLENISSSIFKLKS-LQYIEIKRCSNLKSLESLPNNLCMFK--SLASLEIINCPKLERLPDE--- 255 (490)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~L~~~n~l~~~~~l~~~~~~l~--~L~~L~l~~n~~~~~~p~~--- 255 (490)
..+++|+.|++++|.+. .+|..+..+++ |++|++++ |.+ ..+|..+...+ +|+.|++++|.+.+.+|..
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~-N~L---~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH-NKL---KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS-SCC---CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC-CCC---CcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 99999999999999888 88888999999 99999999 788 57787777665 4999999999998876642
Q ss_pred cc--CccccceeEccCccccccchhh-HhhccccccccccccccccccCccccC--------ccccceeecccccccccC
Q 011233 256 LG--NSKALEELRVEGAAIRERLPES-LGQLALLCELKMIKCSSFESLPSSLCM--------LKYLTSLAIIDCKNFKRL 324 (490)
Q Consensus 256 ~~--~l~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~--------l~~L~~L~Ls~n~~~~~~ 324 (490)
+. .+++|++|++++|+++. +|.. +..+++|+.|++++|.+. .+|..+.. +++|+.|+|++|++. .+
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 22 34589999999999997 6665 458999999999998877 56654432 349999999999877 78
Q ss_pred CcccC--CccccceeeccCcccccCCccccCCCCCCEEeCcC------CCCC-CCchhhhccCCCCEEecCCCCCccccc
Q 011233 325 PNELG--NLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSN------NNLE-RTPASLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 325 ~~~~~--~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~------n~l~-~l~~~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
|..+. .+++|+.|++++|+++++|..+..+++|+.|++++ |++. .+|..+..+++|+.|++++|++ +.+|
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD 822 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence 88887 99999999999999999999999999999999987 6666 6799999999999999999997 6554
Q ss_pred c
Q 011233 396 T 396 (490)
Q Consensus 396 ~ 396 (490)
.
T Consensus 823 ~ 823 (876)
T 4ecn_A 823 E 823 (876)
T ss_dssp S
T ss_pred H
Confidence 3
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-40 Score=345.97 Aligned_cols=430 Identities=15% Similarity=0.110 Sum_probs=288.3
Q ss_pred cccCCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-Cccc
Q 011233 18 VSSLEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSL 91 (490)
Q Consensus 18 ~~~~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~ 91 (490)
..+|.++. +++++|++++|.++++ +..+++|++|++++|.+++++ ..|..+++|++|++++|.+.+..+ .++.
T Consensus 18 ~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 18 TSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp SSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTT
T ss_pred ccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhcc
Confidence 34444443 6788888888887766 667788888888888887765 667778888888888887766665 4778
Q ss_pred CCCCcEEecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcCCc-ccc-cCCccEEeecCCCCCCCCcccccchhhhhh
Q 011233 92 ARNLEILDLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSLPT-SIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLS 168 (490)
Q Consensus 92 l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~ 168 (490)
+++|++|++++|.+.+ ..|..++++++|++|++++|...+.+|. .+. +++|++|++++|.+.+..|..+..+. .|+
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~ 175 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIR-DIH 175 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS-EEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccc-cCc
Confidence 8888888888877765 3556777888888888888776666653 444 77888888888877776666665544 444
Q ss_pred hhh---ccCCcCCccc-cccccCcEEEeccCCCcccc--c-ccccCCCCCCEEecccCCCCC------------------
Q 011233 169 LIK---VGIKELPSSI-ECLSKLDRLSIQDCTRLENI--S-SSIFKLKSLQYIEIKRCSNLK------------------ 223 (490)
Q Consensus 169 ~~~---~~~~~lp~~~-~~l~~L~~L~L~~n~~~~~~--~-~~~~~l~~L~~L~L~~~n~l~------------------ 223 (490)
.++ +....+|..+ ..+++|++|++++|.+.+.. + .....+++|+.|++++ +.++
T Consensus 176 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 176 HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG-SVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES-CEEEHHHHHHHHGGGGGCTTCC
T ss_pred eEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc-cccchhHHHHHHHHhhhhcccc
Confidence 443 4444444433 45677777777777766531 1 1122345555555555 3332
Q ss_pred ----------CCCCCC----cccccCCCCcEEEccCCCCCCc-----cCccccCccccceeEccCccccccchhhH-hhc
Q 011233 224 ----------SLESLP----NNLCMFKSLASLEIINCPKLER-----LPDELGNSKALEELRVEGAAIRERLPESL-GQL 283 (490)
Q Consensus 224 ----------~~~~l~----~~~~~l~~L~~L~l~~n~~~~~-----~p~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~l 283 (490)
.++.++ ..+..+++++.|++.++.+... ++..+...++|++|++++|+++. +|..+ ..+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcC
Confidence 111111 1223344555555555433221 11112234678888888888876 66655 578
Q ss_pred cccccccccccccccccC---ccccCccccceeecccccccccCC--cccCCccccceeeccCcccccCCccccCCCCCC
Q 011233 284 ALLCELKMIKCSSFESLP---SSLCMLKYLTSLAIIDCKNFKRLP--NELGNLKCLVVLIVKGTAIREVPESLGQLSSIV 358 (490)
Q Consensus 284 ~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~ 358 (490)
++|++|++++|.+.+.+| ..++.+++|++|++++|++.+..+ ..+..+++|++|++++|+++.+|..++.+++|+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence 899999999988887664 336778899999999998765432 457888899999999999988888888889999
Q ss_pred EEeCcCCCCCCCchhhhccCCCCEEecCCCCCcc------ccccccccccCCcccchhhhhhhhccccceeeecCeeeec
Q 011233 359 RLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKH------RLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCIS 432 (490)
Q Consensus 359 ~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~------~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (490)
+|++++|+++.+|..+. ++|++|++++|++.+ .+..++++.|.+... +. +
T Consensus 414 ~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~i-----p~-~---------------- 469 (549)
T 2z81_A 414 FLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTL-----PD-A---------------- 469 (549)
T ss_dssp EEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-----CC-G----------------
T ss_pred EEECCCCCcccccchhc--CCceEEECCCCChhhhcccCChhcEEECCCCccCcC-----CC-c----------------
Confidence 99999999888875543 588999999988653 344455555533311 11 0
Q ss_pred cchhhhcccccceeeeEeccccccccccccceeeeeccccccCC
Q 011233 433 LGMKFQSGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGNSNP 476 (490)
Q Consensus 433 ~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~~~~ 476 (490)
...+.++.||+++|++++.+|+++ ....+++.++++.+.+..-
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIF-DRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGG-GGCTTCCEEECCSSCBCCC
T ss_pred ccCccCCEEecCCCccCCcCHHHH-hcCcccCEEEecCCCccCC
Confidence 125677889999999999777665 4567888999886665443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.9e-40 Score=338.98 Aligned_cols=377 Identities=16% Similarity=0.162 Sum_probs=285.4
Q ss_pred eEEEecCCcCccccccCCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEecCC
Q 011233 5 RTLKFYGSENKCMVSSLEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYIDLSH 79 (490)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~ 79 (490)
|+|++++. ....+|..+. +++++|++++|.++++ +..+++|++|++++|.++++ |..|.++++|++|++++
T Consensus 3 ~~l~ls~n---~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKN---GLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTS---CCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCC---Cccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 56788883 3345666666 8999999999999887 78899999999999999987 67899999999999999
Q ss_pred CCCCCCCCCcccCCCCcEEecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcCCcccc-cCCc--cEEeecCCCC--C
Q 011233 80 SESLTKLPDLSLARNLEILDLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYI--EELDFVGCSK--L 153 (490)
Q Consensus 80 n~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L--~~L~ls~n~~--~ 153 (490)
|++. .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+ ..+. +++| ++|++++|.+ .
T Consensus 79 N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred Ccee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9866 56644 89999999999999887 578999999999999999998654 2333 7777 9999999988 5
Q ss_pred CCCcccccchh-------------------------hhhhhhhccCC-----------cCCccccc--------------
Q 011233 154 KNHPAISSSLI-------------------------PLLSLIKVGIK-----------ELPSSIEC-------------- 183 (490)
Q Consensus 154 ~~~~~~~~~~~-------------------------~~L~~~~~~~~-----------~lp~~~~~-------------- 183 (490)
+..|..+..+. +.|+.++.... .+| .+..
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 55555443321 11222110000 000 0111
Q ss_pred -------------cccCcEEEeccCCCcccccccc-----cCCCCCCEEecccCCCCCC---------------------
Q 011233 184 -------------LSKLDRLSIQDCTRLENISSSI-----FKLKSLQYIEIKRCSNLKS--------------------- 224 (490)
Q Consensus 184 -------------l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~L~~~n~l~~--------------------- 224 (490)
.++|++|++++|.+.+.+|..+ +.+++|+.+++++ +.+..
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~-n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVS-DVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEE-CCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccc-cceecchhhhhcccccCceeEEEcCC
Confidence 2367777777777776777666 5565555555555 33300
Q ss_pred --CCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccc--cchhhHhhcccccccccccccccccc
Q 011233 225 --LESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRE--RLPESLGQLALLCELKMIKCSSFESL 300 (490)
Q Consensus 225 --~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~ 300 (490)
+...+ ....+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+.+.+
T Consensus 312 n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 312 TRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp SCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred Ccccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 01111 01578889999999998888888888889999999999999886 45677888999999999998888756
Q ss_pred Ccc-ccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchh-hhccC
Q 011233 301 PSS-LCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPAS-LYQLS 378 (490)
Q Consensus 301 ~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~-l~~l~ 378 (490)
|.. +..+++|++|++++|++.+.+|..+. ++|+.|++++|+++.+|..+..+++|++|++++|+++.+|.. +..++
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCC
Confidence 653 77888999999999998887777664 789999999999999998777899999999999999988865 78899
Q ss_pred CCCEEecCCCCCccccc
Q 011233 379 SIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 379 ~L~~L~ls~n~~~~~l~ 395 (490)
+|++|++++|++.+..+
T Consensus 469 ~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred cccEEECcCCCCcccCC
Confidence 99999999999876554
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-39 Score=328.93 Aligned_cols=351 Identities=19% Similarity=0.148 Sum_probs=286.8
Q ss_pred CCCccceeeecccccccc----ccCCCCccEEEcCCCCcc-cc-cccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcE
Q 011233 25 PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVK-QL-WNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEI 97 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~-~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~ 97 (490)
.++++++|++++|.++++ +..+++|++|++++|.+. .+ +..|..+++|++|++++|.+.+..| .++.+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 447899999999998877 778899999999999886 45 4678889999999999998877766 7888999999
Q ss_pred EecCCCCCCcccchh--hhccccCcEEEccCCCCCCcCCcc-cc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhcc
Q 011233 98 LDLGSCSSLTETHSS--IQYLNKLEVLDLRHCESLGSLPTS-IH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVG 173 (490)
Q Consensus 98 L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~~~~~~p~~-~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~ 173 (490)
|++++|.+.+..+.. ++++++|++|++++|.+.+..|.. +. +++|++|++++|.+.+..+..+..+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---------- 177 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF---------- 177 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGG----------
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcc----------
Confidence 999999887765554 888999999999999877666765 44 8999999999987765544332211
Q ss_pred CCcCCccccccccCcEEEeccCCCccccccc--------ccCCCCCCEEecccCCCCCCCCCCCcccccC---CCCcEEE
Q 011233 174 IKELPSSIECLSKLDRLSIQDCTRLENISSS--------IFKLKSLQYIEIKRCSNLKSLESLPNNLCMF---KSLASLE 242 (490)
Q Consensus 174 ~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~--------~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l---~~L~~L~ 242 (490)
...+++.|++++|.+.+..+.. +..+++|++|++++ |.++ +..|..+... ++|+.|+
T Consensus 178 ---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~--~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 178 ---------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFK--ESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp ---------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCC--HHHHHHHHHHTTTCCEEEEE
T ss_pred ---------ccccccccccccCcccccchhhccccccccccccceeeeEecCC-Cccc--ccchhhhhccccccceeeEe
Confidence 1257899999998877654332 33668899999999 7775 5555555443 7899999
Q ss_pred ccCCCCCCcc----------CccccC--ccccceeEccCccccccchhhHhhccccccccccccccccccCccccCcccc
Q 011233 243 IINCPKLERL----------PDELGN--SKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYL 310 (490)
Q Consensus 243 l~~n~~~~~~----------p~~~~~--l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 310 (490)
+++|...+.. +..+.. .++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 325 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence 9987554321 112222 3689999999999999889999999999999999999998889899999999
Q ss_pred ceeecccccccccCCcccCCccccceeeccCcccccC-CccccCCCCCCEEeCcCCCCCCCch-hhhccCCCCEEecCCC
Q 011233 311 TSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREV-PESLGQLSSIVRLDLSNNNLERTPA-SLYQLSSIKYLKLFDN 388 (490)
Q Consensus 311 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ls~n 388 (490)
++|++++|++.+..|..++.+++|++|++++|+++++ |..+..+++|++|++++|+++++|. .+..+++|++|++++|
T Consensus 326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 9999999999888889999999999999999999994 7889999999999999999999864 5678999999999999
Q ss_pred CCccccccc
Q 011233 389 NFKHRLLTL 397 (490)
Q Consensus 389 ~~~~~l~~l 397 (490)
++.+..+.+
T Consensus 406 ~l~~~~~~~ 414 (455)
T 3v47_A 406 PWDCSCPRI 414 (455)
T ss_dssp CBCCCTTTT
T ss_pred CcccCCCcc
Confidence 998887754
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.1e-39 Score=335.40 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=122.5
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc----ccCCCCccEEEcCCCCccccc-ccccCCCCCCEE
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYI 75 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L 75 (490)
++|++|+++++. -....+..+ .+++|++|++++|.++++ +..+++|++|++++|.+++++ ..++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCc--cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 478999999943 223335566 889999999999999887 778899999999999999987 458999999999
Q ss_pred ecCCCCCCC-CCC-CcccCCCCcEEecCCCCCCcccc-hhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCC
Q 011233 76 DLSHSESLT-KLP-DLSLARNLEILDLGSCSSLTETH-SSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCS 151 (490)
Q Consensus 76 ~Ls~n~~~~-~~~-~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~ 151 (490)
++++|.+.+ ..| .++.+++|++|++++|...+.+| ..++++++|++|++++|.+.+..|..+. +++|++|++++|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999999875 344 78999999999999998666665 6899999999999999998777777766 6667777766655
Q ss_pred C
Q 011233 152 K 152 (490)
Q Consensus 152 ~ 152 (490)
.
T Consensus 184 ~ 184 (549)
T 2z81_A 184 S 184 (549)
T ss_dssp S
T ss_pred c
Confidence 3
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=335.25 Aligned_cols=410 Identities=15% Similarity=0.127 Sum_probs=300.0
Q ss_pred ceeeecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCC
Q 011233 30 RYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSL 106 (490)
Q Consensus 30 ~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~ 106 (490)
+++++++|.++.+ ..-.++|++|++++|.+++++ ..+..+++|++|++++|++.+..| .|..+++|++|++++|.+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 6899999999998 323389999999999999986 789999999999999999887767 8999999999999999887
Q ss_pred cccchhhhccccCcEEEccCCCCCC-cCCcccc-cCCccEEeecCCCCCCCCcccccchhhhh--hhhh---ccC---Cc
Q 011233 107 TETHSSIQYLNKLEVLDLRHCESLG-SLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLL--SLIK---VGI---KE 176 (490)
Q Consensus 107 ~~~~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L--~~~~---~~~---~~ 176 (490)
.+|.. .+++|++|++++|.+.+ .+|..+. +++|++|++++|.+.+. .+..+. .| +.++ +.+ ..
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~-~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIA-HLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGT-TSCEEEEEEEECTTTTSSC
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccc-cceeeEEEeeccccccccc
Confidence 56655 89999999999999776 5788888 99999999999987652 222222 33 3322 322 22
Q ss_pred CCccccc--------------------------cccCcEEEeccCC-------CcccccccccCCCCCCEEecccCCCCC
Q 011233 177 LPSSIEC--------------------------LSKLDRLSIQDCT-------RLENISSSIFKLKSLQYIEIKRCSNLK 223 (490)
Q Consensus 177 lp~~~~~--------------------------l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L~L~~~n~l~ 223 (490)
.|..+.. +++|+.|++++|. +.+.++ .++.+++|+.|++++ +.++
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~-~~l~ 233 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN-IETT 233 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE-EEEE
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc-cccC
Confidence 3433333 4555555555554 333333 355566666666655 3332
Q ss_pred CCCCCCccc---ccCCCCcEEEccCCCCCCccCccc-----cCccccceeEccCccccccch-hhHhhc---cccccccc
Q 011233 224 SLESLPNNL---CMFKSLASLEIINCPKLERLPDEL-----GNSKALEELRVEGAAIRERLP-ESLGQL---ALLCELKM 291 (490)
Q Consensus 224 ~~~~l~~~~---~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~ls~n~l~~~~~-~~~~~l---~~L~~L~l 291 (490)
+..+..+ ...++|++|++++|.+.+.+|..+ ..++.|+.+++++|.+ . +| ..+..+ .+|+.|++
T Consensus 234 --~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~-~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 234 --WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-G-FPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp --HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-C-SCTHHHHHHHHTCCCSEEEE
T ss_pred --HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-e-cchhhhhcccccCceeEEEc
Confidence 1100000 123578888888888877888877 7888888888888888 3 56 455555 67899999
Q ss_pred cccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccccc---CCccccCCCCCCEEeCcCCCCC
Q 011233 292 IKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE---VPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 292 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
++|.+.+.. ....+++|++|++++|++.+.+|..++.+++|++|++++|++++ +|..++.+++|++|++++|+++
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 888765432 12678899999999999988888889999999999999999986 4567889999999999999999
Q ss_pred C-Cchh-hhccCCCCEEecCCCCCcc--------ccccccccccCCcccchhhhhhhhccccceeeecCeeeeccchhhh
Q 011233 369 R-TPAS-LYQLSSIKYLKLFDNNFKH--------RLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGMKFQ 438 (490)
Q Consensus 369 ~-l~~~-l~~l~~L~~L~ls~n~~~~--------~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (490)
. +|.. +..+++|++|++++|++.+ .+..++++.|.+... +. .....+.+
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~i-----p~----------------~~~~l~~L 446 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI-----PK----------------QVVKLEAL 446 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCC-----CG----------------GGGGCTTC
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccccc-----ch----------------hhhcCCCC
Confidence 7 7754 6778999999999998754 344455554433211 11 11136677
Q ss_pred cccccceeeeEeccccccccccccceeeeeccccccCC
Q 011233 439 SGLGIKHFQFQTALGRKVWRMTGNATCLMCSVIGNSNP 476 (490)
Q Consensus 439 ~~l~ls~n~~~~~~p~~~~~~~~~~~~l~~s~~~~~~~ 476 (490)
+.|++++|++++ +|...+....++++++++.+.+..-
T Consensus 447 ~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 447 QELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 889999999985 6666556677889999887665543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-37 Score=324.21 Aligned_cols=375 Identities=15% Similarity=0.149 Sum_probs=278.2
Q ss_pred eEEEecCCcCccccccCCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEecCC
Q 011233 5 RTLKFYGSENKCMVSSLEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYIDLSH 79 (490)
Q Consensus 5 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~ 79 (490)
+++++++. ....+|.++. +++++|++++|.++++ +..+++|++|++++|.++++ |..|..+++|++|++++
T Consensus 34 ~~l~ls~~---~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNR---NLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTS---CCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCC---CCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 67777773 3344565554 7999999999998887 77889999999999999987 57789999999999999
Q ss_pred CCCCCCCCCcccCCCCcEEecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcCCcccc-cCCc--cEEeecCCCC--C
Q 011233 80 SESLTKLPDLSLARNLEILDLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYI--EELDFVGCSK--L 153 (490)
Q Consensus 80 n~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L--~~L~ls~n~~--~ 153 (490)
|.+. .+|.. .+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+. .+. +++| ++|++++|.+ .
T Consensus 110 N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 9865 56644 89999999999998877 4568899999999999999886542 222 5555 9999999988 6
Q ss_pred CCCcccccchh-hhhhhhh---ccC-CcCC-ccccccc------------------------------------------
Q 011233 154 KNHPAISSSLI-PLLSLIK---VGI-KELP-SSIECLS------------------------------------------ 185 (490)
Q Consensus 154 ~~~~~~~~~~~-~~L~~~~---~~~-~~lp-~~~~~l~------------------------------------------ 185 (490)
+..|..+..+. +.+.+ + +.+ ..++ ..+..++
T Consensus 185 ~~~~~~l~~l~~~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceEEE-EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 77666655432 12222 2 111 1111 1122222
Q ss_pred -------------cCcEEEeccCCCcccccccc-----cCCC--------------------------CCCEEecccCCC
Q 011233 186 -------------KLDRLSIQDCTRLENISSSI-----FKLK--------------------------SLQYIEIKRCSN 221 (490)
Q Consensus 186 -------------~L~~L~L~~n~~~~~~~~~~-----~~l~--------------------------~L~~L~L~~~n~ 221 (490)
+|++|++++|.+.+.+|..+ ..++ +|++|++++ +.
T Consensus 264 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~-n~ 342 (562)
T 3a79_B 264 KCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TP 342 (562)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES-SC
T ss_pred HHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC-CC
Confidence 55566666666655666544 2222 244455554 33
Q ss_pred CCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccc--cchhhHhhccccccccccccccccc
Q 011233 222 LKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRE--RLPESLGQLALLCELKMIKCSSFES 299 (490)
Q Consensus 222 l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~ 299 (490)
+.. .+ ....+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+.+.
T Consensus 343 ~~~---~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 343 FIH---MV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCC---CC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred ccc---cc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 321 11 01567899999999998888888888999999999999999887 2345688899999999999888875
Q ss_pred cCc-cccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchh-hhcc
Q 011233 300 LPS-SLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPAS-LYQL 377 (490)
Q Consensus 300 ~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~-l~~l 377 (490)
+|. .+..+++|++|++++|++.+.+|..+. ++|+.|++++|+++.+|..+..+++|++|++++|+++++|.. +..+
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 554 477889999999999998877766554 689999999999999998777999999999999999999876 8889
Q ss_pred CCCCEEecCCCCCcccccc
Q 011233 378 SSIKYLKLFDNNFKHRLLT 396 (490)
Q Consensus 378 ~~L~~L~ls~n~~~~~l~~ 396 (490)
++|++|++++|++.+..+.
T Consensus 497 ~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTCCCEECCSCCBCCCHHH
T ss_pred CCCCEEEecCCCcCCCcch
Confidence 9999999999998776654
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.7e-37 Score=311.54 Aligned_cols=322 Identities=21% Similarity=0.271 Sum_probs=202.0
Q ss_pred CCCccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCC
Q 011233 25 PLTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGS 102 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~ 102 (490)
.+++|++|++++|.++++ +..+++|++|++++|.+++++. +.++++|++|++++|.+.+ ++.+..+++|++|++++
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSS 143 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEEEEE
T ss_pred hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC-ChHHcCCCCCCEEECCC
Confidence 444555555555554444 4444555555555555554443 4455555555555554332 22344555555555555
Q ss_pred CCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccc
Q 011233 103 CSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIE 182 (490)
Q Consensus 103 n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~ 182 (490)
|.+.+. + .++.+++|++|++++ . ...++....+++|++|++++|.+ ..++ .+.
T Consensus 144 n~l~~~-~-~~~~l~~L~~L~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~~-~l~ 196 (466)
T 1o6v_A 144 NTISDI-S-ALSGLTSLQQLSFGN-Q-VTDLKPLANLTTLERLDISSNKV----------------------SDIS-VLA 196 (466)
T ss_dssp EEECCC-G-GGTTCTTCSEEEEEE-S-CCCCGGGTTCTTCCEEECCSSCC----------------------CCCG-GGG
T ss_pred CccCCC-h-hhccCCcccEeecCC-c-ccCchhhccCCCCCEEECcCCcC----------------------CCCh-hhc
Confidence 443331 1 244455555555532 2 11222211145555555555432 2222 356
Q ss_pred ccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccc
Q 011233 183 CLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKAL 262 (490)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 262 (490)
.+++|++|++++|.+.+..+ ++.+++|++|++++ +.++. + ..+..+++|++|++++|.+.+..| +..+++|
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~~---~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNG-NQLKD---I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCS-SCCCC---C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCC-CCccc---c-hhhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence 77788888888877766544 66778888888888 66642 3 346677888888888877666544 6777888
Q ss_pred ceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCc
Q 011233 263 EELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGT 342 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (490)
++|++++|.+++ ++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..| ++.+++|+.|++++|
T Consensus 268 ~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 268 TELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNN 341 (466)
T ss_dssp SEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred CEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCC
Confidence 888888888877 343 7778888888888877766443 6777888888888887766554 677788888888888
Q ss_pred ccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCcc
Q 011233 343 AIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 343 ~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~ 392 (490)
.+++++ .+..+++|++|++++|+++.++. +..+++|++|++++|++.+
T Consensus 342 ~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 342 KVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 887774 56778888888888888887654 7778888888888887654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-37 Score=314.28 Aligned_cols=352 Identities=13% Similarity=0.075 Sum_probs=292.8
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeeccccccc-c----ccCCCCccEEEcCCCCcccc-cccccCCCCCCE
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLET-L----NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKY 74 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-l----~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~ 74 (490)
++||+|+++++. .....+..+ .+++|++|++++|.+.+ + +..+++|++|++++|.++++ |..+.++++|++
T Consensus 30 ~~l~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNS--IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSC--CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCc--cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 579999999943 223346667 89999999999998863 3 78899999999999999986 688999999999
Q ss_pred EecCCCCCCCCCC-C--cccCCCCcEEecCCCCCCcccchh-hhccccCcEEEccCCCCCCcCCcccc---cCCccEEee
Q 011233 75 IDLSHSESLTKLP-D--LSLARNLEILDLGSCSSLTETHSS-IQYLNKLEVLDLRHCESLGSLPTSIH---SKYIEELDF 147 (490)
Q Consensus 75 L~Ls~n~~~~~~~-~--~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~---l~~L~~L~l 147 (490)
|++++|.+.+.++ . +..+++|++|++++|.+.+..|.. ++++++|++|++++|.+.+..|..+. ..+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 9999999877544 3 889999999999999998887876 89999999999999998777777666 379999999
Q ss_pred cCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCC---CCCCEEecccCCCCCC
Q 011233 148 VGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKL---KSLQYIEIKRCSNLKS 224 (490)
Q Consensus 148 s~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l---~~L~~L~L~~~n~l~~ 224 (490)
++|.+.+..+..+... ....+..+++|++|++++|.+.+..+..+... ++|+.|++++ +....
T Consensus 188 ~~n~l~~~~~~~~~~~-------------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~ 253 (455)
T 3v47_A 188 SSITLQDMNEYWLGWE-------------KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN-SYNMG 253 (455)
T ss_dssp TTCBCTTCSTTCTTHH-------------HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT-CTTTS
T ss_pred ccCcccccchhhcccc-------------ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc-ccccc
Confidence 9987665433322110 01123456789999999999998887766543 8899999998 43321
Q ss_pred C--------CCCCcccc--cCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccccccccccc
Q 011233 225 L--------ESLPNNLC--MFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKC 294 (490)
Q Consensus 225 ~--------~~l~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n 294 (490)
. ...+..+. ..++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 333 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC
Confidence 0 00111222 2468999999999999999999999999999999999999977889999999999999999
Q ss_pred ccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCCCCCEEeCcCCCCCC
Q 011233 295 SSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLER 369 (490)
Q Consensus 295 ~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~ 369 (490)
.+.+..+..+..+++|++|++++|++.+..|.++..+++|++|++++|+++++| ..+..+++|++|++++|.++.
T Consensus 334 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 998888888999999999999999998888999999999999999999999977 467899999999999999983
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-36 Score=307.28 Aligned_cols=324 Identities=21% Similarity=0.254 Sum_probs=267.8
Q ss_pred CCccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCC
Q 011233 26 LTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSC 103 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n 103 (490)
++++++|+++++.++.+ +..+++|++|++++|.+++++. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 57889999999988887 6778999999999999998876 8889999999999998766554 889999999999998
Q ss_pred CCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccc
Q 011233 104 SSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIEC 183 (490)
Q Consensus 104 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~ 183 (490)
.+.+..+ +.++++|++|++++|.+ ..++....+++|++|+++++ .. .++ .+..
T Consensus 123 ~l~~~~~--~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~-~~----------------------~~~-~~~~ 175 (466)
T 1o6v_A 123 QITDIDP--LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQ-VT----------------------DLK-PLAN 175 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEES-CC----------------------CCG-GGTT
T ss_pred CCCCChH--HcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCc-cc----------------------Cch-hhcc
Confidence 8766543 88899999999999874 44554333889999998642 11 122 2678
Q ss_pred cccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccc
Q 011233 184 LSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALE 263 (490)
Q Consensus 184 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 263 (490)
+++|++|++++|.+.+. + .+..+++|++|++++ +.++ .++. ++.+++|++|++++|.+.+. ..+..+++|+
T Consensus 176 l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~-n~l~---~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI-S-VLAKLTNLESLIATN-NQIS---DITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCS-SCCC---CCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred CCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecC-Cccc---cccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 89999999999987653 3 488999999999999 7774 3332 77899999999999877653 3578899999
Q ss_pred eeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcc
Q 011233 264 ELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTA 343 (490)
Q Consensus 264 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (490)
+|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ ++.+++|+.|++++|+
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 99999999998443 8899999999999998876554 7889999999999999776544 8899999999999999
Q ss_pred cccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCccccc
Q 011233 344 IREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 344 l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
++++++ +..+++|++|++++|+++.++ .+..+++|++|++++|++.+..+
T Consensus 321 l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 321 ISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch
Confidence 999765 788999999999999999886 68899999999999999865443
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.5e-37 Score=326.17 Aligned_cols=417 Identities=16% Similarity=0.101 Sum_probs=261.2
Q ss_pred ccCCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccC
Q 011233 19 SSLEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLA 92 (490)
Q Consensus 19 ~~~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l 92 (490)
.+|.++ ++++++|+|++|.++++ +..+++|++|+|++|.|++++ ..|.++++|++|+|++|++.+..+ .|.++
T Consensus 45 ~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 45 KIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred ccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 344444 35889999999988887 778889999999999998886 568888999999999988766555 67888
Q ss_pred CCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCC-cCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhh--
Q 011233 93 RNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLG-SLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLS-- 168 (490)
Q Consensus 93 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~-- 168 (490)
++|++|++++|.+.+..+..|+++++|++|++++|.+.+ ..|..+. +++|++|++++|++.+..+..+..+. .+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~-~l~~~ 202 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLL 202 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh-hhhhh
Confidence 999999999988877777778888999999998887654 4566666 88899999998887766555443322 111
Q ss_pred -----hhhccCCcCCcccccc-----------------------------------------------------------
Q 011233 169 -----LIKVGIKELPSSIECL----------------------------------------------------------- 184 (490)
Q Consensus 169 -----~~~~~~~~lp~~~~~l----------------------------------------------------------- 184 (490)
...+.+..++......
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 1112222222111111
Q ss_pred -----------------------ccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCC--------------
Q 011233 185 -----------------------SKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLES-------------- 227 (490)
Q Consensus 185 -----------------------~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~-------------- 227 (490)
.+++.+++.++.+... ..+.....++.|++.+ +.+..+..
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVN-CKFGQFPTLKLKSLKRLTFTSN 359 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEES-CEESSCCCCBCTTCCEEEEESC
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhccc-ccccCcCcccchhhhhcccccc
Confidence 1122222222211111 1122334455555544 32211000
Q ss_pred ---CCcccccCCCCcEEEccCCCCCC--ccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccC-
Q 011233 228 ---LPNNLCMFKSLASLEIINCPKLE--RLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLP- 301 (490)
Q Consensus 228 ---l~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~- 301 (490)
.+.....+++|+.+++++|.+.. ..+..+..+.+|+.++++.+.... .+..+..+++|+.+++..++.....+
T Consensus 360 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 360 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred cCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccc
Confidence 00011234455555555544321 223333344455555555554444 33445555666666666555444332
Q ss_pred ccccCccccceeecccccccccCCcccCCccccceeeccCccccc--CCccccCCCCCCEEeCcCCCCCCC-chhhhccC
Q 011233 302 SSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE--VPESLGQLSSIVRLDLSNNNLERT-PASLYQLS 378 (490)
Q Consensus 302 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~ 378 (490)
..+..+++++.++++.|.+.+..+..+..++.++.|++++|.+.. .|..+..+++|++|+|++|+++++ |..|..++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~ 518 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC
Confidence 345667777777777777777777777777888888888876444 667777788888888888888765 56677788
Q ss_pred CCCEEecCCCCCccccccccccccCCcccchhhhhhhhccccceeeecCeeeeccchhhhcccccceeeeEecccccccc
Q 011233 379 SIKYLKLFDNNFKHRLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWR 458 (490)
Q Consensus 379 ~L~~L~ls~n~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~ 458 (490)
+|++|+|++|++.+-. +..+. +.+.++.||+++|++++..|+++..
T Consensus 519 ~L~~L~Ls~N~l~~l~------------------~~~~~----------------~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 519 SLQVLNMSHNNFFSLD------------------TFPYK----------------CLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp TCCEEECTTSCCCBCC------------------CGGGT----------------TCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred CCCEEECCCCcCCCCC------------------hhHHh----------------CCCCCCEEECCCCcCCCCCHHHHHh
Confidence 8888888888653211 11111 1567788999999999998988877
Q ss_pred ccccceeeeeccccccC
Q 011233 459 MTGNATCLMCSVIGNSN 475 (490)
Q Consensus 459 ~~~~~~~l~~s~~~~~~ 475 (490)
...++++|+++.+.+.+
T Consensus 565 l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 565 FPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCTTCCEEECTTCCBCC
T ss_pred hhCcCCEEEeeCCCCcc
Confidence 77889999988544433
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.8e-36 Score=301.47 Aligned_cols=352 Identities=14% Similarity=0.107 Sum_probs=216.7
Q ss_pred CCCccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCC
Q 011233 25 PLTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGS 102 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~ 102 (490)
.+++|++|++++|.++++ +..+++|++|++++|.++++| ++.+++|++|++++|.+.+. + ++.+++|++|++++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDT 115 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCS
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCC
Confidence 456677777777766666 556667777777777776664 66667777777777665543 2 66667777777777
Q ss_pred CCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccc
Q 011233 103 CSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSI 181 (490)
Q Consensus 103 n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~ 181 (490)
|.+.+. | ++.+++|++|++++|.+.+ ++ +. +++|++|++++|...+.+ .+
T Consensus 116 N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~-----------------------~~ 166 (457)
T 3bz5_A 116 NKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL-----------------------DV 166 (457)
T ss_dssp SCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC-----------------------CC
T ss_pred CcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc-----------------------cc
Confidence 665552 3 6666777777777666443 32 33 666777777666433321 13
Q ss_pred cccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccc
Q 011233 182 ECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKA 261 (490)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 261 (490)
..+++|++|++++|.+.+ +| ++.+++|++|++++ |.++. + .++.+++|++|++++|.+.+ +| +..+++
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~-N~l~~---~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDT-NNITK---L--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCS-SCCSC---C--CCTTCTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcC-CcCCe---e--ccccCCCCCEEECcCCcccc-cC--ccccCC
Confidence 455667777777766655 33 66667777777777 66642 2 25566777777777766655 44 566677
Q ss_pred cceeEccCccccccchhhHhhcc-------ccccccccccccccccCccccCccccceeecccccccccCCcccCCcccc
Q 011233 262 LEELRVEGAAIRERLPESLGQLA-------LLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCL 334 (490)
Q Consensus 262 L~~L~ls~n~l~~~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 334 (490)
|++|++++|++++..+..+..+. +|+.+++++|...+.+| ++.+++|+.|++++|...+.+|. ..++|
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence 77777777777663332322222 33444455544444444 24445555555555554444442 22334
Q ss_pred ceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCcc--ccccccccccCCcccchhhh
Q 011233 335 VVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKH--RLLTLSVDLNLVPNVLSEII 412 (490)
Q Consensus 335 ~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~--~l~~l~~~~n~~~~~~~~~~ 412 (490)
+.|++ ..+++|++|++++|++++++ +..+++|+.|++++|++.+ .++.++++.| .+.+.
T Consensus 310 ~~L~l------------~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n----~l~g~- 370 (457)
T 3bz5_A 310 TELDL------------SQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNN----NFEAE- 370 (457)
T ss_dssp SCCCC------------TTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGT----SEEEE-
T ss_pred eEech------------hhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccccccccccCC----cEEec-
Confidence 44433 44578999999999999985 8889999999999999864 2223332222 11111
Q ss_pred hhhhccccceeeecCeeeeccchhhhcccccceeeeEecccccccccccccee
Q 011233 413 NDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRMTGNATC 465 (490)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~~~~~~~ 465 (490)
.....+..+|+++|+++|.+|..+.+...+...
T Consensus 371 --------------------~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~ 403 (457)
T 3bz5_A 371 --------------------GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403 (457)
T ss_dssp --------------------EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCE
T ss_pred --------------------ceeeecCccccccCcEEEEcChhHhcccCceee
Confidence 113445678999999999999877665555443
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-36 Score=315.77 Aligned_cols=333 Identities=15% Similarity=0.124 Sum_probs=220.3
Q ss_pred CCccceeeecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCC
Q 011233 26 LTEVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGS 102 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~ 102 (490)
....++++++++.++++ ..-.+++++|++++|.+++++ ..+.++++|++|++++|.+.+..| .|..+++|++|++++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 33458999999999988 333589999999999999886 688999999999999999887766 789999999999999
Q ss_pred CCCCcccchhhhccccCcEEEccCCCCCC-cCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcc
Q 011233 103 CSSLTETHSSIQYLNKLEVLDLRHCESLG-SLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSS 180 (490)
Q Consensus 103 n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~ 180 (490)
|.+. .+|.. .+++|++|++++|.+.+ .+|..+. +++|++|++++|.+.+. .
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------------------------~ 162 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------------------------D 162 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT------------------------T
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC------------------------c
Confidence 9876 56655 79999999999998655 3456777 99999999999865431 2
Q ss_pred ccccccC--cEEEeccCCC--cccccccccCCC--------------------------CCCEEecccC-----------
Q 011233 181 IECLSKL--DRLSIQDCTR--LENISSSIFKLK--------------------------SLQYIEIKRC----------- 219 (490)
Q Consensus 181 ~~~l~~L--~~L~L~~n~~--~~~~~~~~~~l~--------------------------~L~~L~L~~~----------- 219 (490)
+..+++| +.|++++|.+ .+..|..+..+. +|+.++++++
T Consensus 163 ~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~ 242 (562)
T 3a79_B 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242 (562)
T ss_dssp TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH
T ss_pred hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH
Confidence 3344455 9999999988 666555554432 3333333331
Q ss_pred -------------------------------------------CCCCCCCCCCccc-----ccCC---------------
Q 011233 220 -------------------------------------------SNLKSLESLPNNL-----CMFK--------------- 236 (490)
Q Consensus 220 -------------------------------------------n~l~~~~~l~~~~-----~~l~--------------- 236 (490)
+.++ +.+|..+ ..++
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p 320 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT--ERIDREEFTYSETALKSLMIEHVKNQVFLFS 320 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC--SCCCCCCCCCCSCSCCEEEEEEEEECCCSSC
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee--ccccchhhhcccccchheehhhcccceeecC
Confidence 2222 2333322 1111
Q ss_pred -----------CCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccccccccccccccc--ccCcc
Q 011233 237 -----------SLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFE--SLPSS 303 (490)
Q Consensus 237 -----------~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~ 303 (490)
+|++|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|.+.+ .+|..
T Consensus 321 ~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 398 (562)
T 3a79_B 321 KEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398 (562)
T ss_dssp HHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred hhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh
Confidence 2333333333221110 01455667777777777766666666667777777777766654 33455
Q ss_pred ccCccccceeecccccccccCCc-ccCCccccceeeccCccccc-CCccccCCCCCCEEeCcCCCCCCCchhhhccCCCC
Q 011233 304 LCMLKYLTSLAIIDCKNFKRLPN-ELGNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIK 381 (490)
Q Consensus 304 ~~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~ 381 (490)
+..+++|++|++++|++.+.+|. .+..+++|++|++++|++++ +|..+. ++|++|++++|+++.+|..+..+++|+
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~ 476 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQ 476 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCS
T ss_pred hcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCC
Confidence 66667777777777776664443 35666777777777777655 443332 567777777777777766666777777
Q ss_pred EEecCCCCCc
Q 011233 382 YLKLFDNNFK 391 (490)
Q Consensus 382 ~L~ls~n~~~ 391 (490)
+|++++|++.
T Consensus 477 ~L~L~~N~l~ 486 (562)
T 3a79_B 477 ELNVASNQLK 486 (562)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 7777777653
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-35 Score=315.00 Aligned_cols=386 Identities=19% Similarity=0.193 Sum_probs=256.4
Q ss_pred CcceEEEecCCcCccccccC-CCC-CCCccceeeecccccccc----ccCCCCccEEEcCCCCccccc-ccccCCCCCCE
Q 011233 2 TELRTLKFYGSENKCMVSSL-EGV-PLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKY 74 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~-~~~-~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~ 74 (490)
+++|+|+++++ ....++ ..+ .+++|++|++++|.++++ +..+++|++|+|++|+++++| ..|.++++|++
T Consensus 52 ~~~~~LdLs~N---~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFN---PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCC---CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 46899999993 334444 456 899999999999999988 778999999999999999987 56899999999
Q ss_pred EecCCCCCCCCCC-CcccCCCCcEEecCCCCCCc-ccchhhhccccCcEEEccCCCCCCcCCcccc-cCC----ccEEee
Q 011233 75 IDLSHSESLTKLP-DLSLARNLEILDLGSCSSLT-ETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKY----IEELDF 147 (490)
Q Consensus 75 L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~----L~~L~l 147 (490)
|++++|++.+..+ .|+.+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..+. +.+ ...+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999999877666 68999999999999999876 4678899999999999999986655444433 211 123333
Q ss_pred cCCCCCCCCccccc------------------------------------------------------------------
Q 011233 148 VGCSKLKNHPAISS------------------------------------------------------------------ 161 (490)
Q Consensus 148 s~n~~~~~~~~~~~------------------------------------------------------------------ 161 (490)
+.|.+....+..+.
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 33322111000000
Q ss_pred ---------------chh------------------------hhhhhhhccCCcCCccccccccCcEEEeccCCCccccc
Q 011233 162 ---------------SLI------------------------PLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENIS 202 (490)
Q Consensus 162 ---------------~~~------------------------~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~ 202 (490)
... +.|...++.+..++ ...++.|+.+++.+|......
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~~- 365 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAF- 365 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCC--CCBCTTCCEEEEESCCSCCBC-
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcC--cccchhhhhcccccccCCCCc-
Confidence 000 00000011111111 112344555555544332211
Q ss_pred ccccCCCCCCEEecccCCCCCCC-----------------------CCCCcccccCCCCcEEEccCCCCCCccC-ccccC
Q 011233 203 SSIFKLKSLQYIEIKRCSNLKSL-----------------------ESLPNNLCMFKSLASLEIINCPKLERLP-DELGN 258 (490)
Q Consensus 203 ~~~~~l~~L~~L~L~~~n~l~~~-----------------------~~l~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~ 258 (490)
....+++|+.++++. |.+... ...+..+..+++|+.+++..+......+ ..+..
T Consensus 366 -~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 366 -SEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp -CCCBCTTCCEEECCS-SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred -ccccccccccchhhc-cccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 123344455555544 333222 2233345556666666666555444333 34566
Q ss_pred ccccceeEccCccccccchhhHhhcccccccccccccccc-ccCccccCccccceeecccccccccCCcccCCcccccee
Q 011233 259 SKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFE-SLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVL 337 (490)
Q Consensus 259 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 337 (490)
+++++.++++.|.+.+..+..+..++.|++|++++|...+ ..|..+..+++|++|+|++|++.+..|.+|.++++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 7777788888887777667777777888888888776443 466677777888888888888777777778888888888
Q ss_pred eccCcccccCC-ccccCCCCCCEEeCcCCCCCCC-chhhhcc-CCCCEEecCCCCCccccc
Q 011233 338 IVKGTAIREVP-ESLGQLSSIVRLDLSNNNLERT-PASLYQL-SSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 338 ~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l-~~L~~L~ls~n~~~~~l~ 395 (490)
+|++|++++++ ..|..+++|++|++++|+++++ |..+..+ ++|++|++++|++.....
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 88888887754 5677788888888888888766 5566666 578888888888765443
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4e-36 Score=304.07 Aligned_cols=386 Identities=19% Similarity=0.139 Sum_probs=248.0
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc----ccCCCC-------------ccEEEcCCCCccccc
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL----NINGEN-------------LVSLKMPGRKVKQLW 63 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l----~~~~~~-------------L~~L~Ls~n~i~~l~ 63 (490)
+.||+|+++++ ....+|.++ .+++|++|++++|.+.+. +..+++ +++|++++|+++++|
T Consensus 11 ~~L~~L~l~~n---~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSS---NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccC---chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 57899999983 347788888 899999999999998755 444554 499999999999988
Q ss_pred ccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCc
Q 011233 64 NDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYI 142 (490)
Q Consensus 64 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L 142 (490)
.. .++|++|++++|.+.+ +|.. +++|++|++++|.+.+ +|.. .++|++|++++|.+. .+|. +. +++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~--~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~-~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL--PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cccc--cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc-cCCCCCC
Confidence 63 4799999999999777 5632 4899999999998765 2221 268999999999855 4884 55 9999
Q ss_pred cEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCC
Q 011233 143 EELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNL 222 (490)
Q Consensus 143 ~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l 222 (490)
++|++++|.+.+ +|.....+. .|.+.++.+..+| .++.+++|++|++++|.+.+ +|.. .++|++|++++ |.+
T Consensus 156 ~~L~l~~N~l~~-lp~~~~~L~-~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~-n~l 227 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDLPPSLE-FIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGN-NIL 227 (454)
T ss_dssp CEEECCSSCCSC-CCCCCTTCC-EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS-SCC
T ss_pred CEEECCCCcCcc-cCCCccccc-EEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcC-CcC
Confidence 999999998775 555544333 5555557777777 58888899999999887765 4432 25888999988 677
Q ss_pred CCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCc
Q 011233 223 KSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPS 302 (490)
Q Consensus 223 ~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 302 (490)
..+|. ++.+++|++|++++|.+.+ +|.. .++|++|++++|++++ +|.. +++|++|++++|.+.+ +|.
T Consensus 228 ---~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~ 294 (454)
T 1jl5_A 228 ---EELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE 294 (454)
T ss_dssp ---SSCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC
T ss_pred ---Ccccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC
Confidence 45663 7788899999999887665 4543 4788999999998887 6653 3788999999887766 222
Q ss_pred cccCccccceeecccccccccCCcccCCc-cccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCC
Q 011233 303 SLCMLKYLTSLAIIDCKNFKRLPNELGNL-KCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIK 381 (490)
Q Consensus 303 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~ 381 (490)
. .++|++|++++|++.+ ++ .+ ++|++|++++|+++++|.. +++|++|++++|+++++|. .+++|+
T Consensus 295 ~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~ 360 (454)
T 1jl5_A 295 L---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLK 360 (454)
T ss_dssp C---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCC
T ss_pred c---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhcc
Confidence 1 2688899999988665 22 23 4899999999999988865 5889999999999998886 578999
Q ss_pred EEecCCCCCcc--ccccccccccCCcccchhhhhhhhccccceeeecCeeeeccchhhhcccccceeeeEe--ccccccc
Q 011233 382 YLKLFDNNFKH--RLLTLSVDLNLVPNVLSEIINDRWRKLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQT--ALGRKVW 457 (490)
Q Consensus 382 ~L~ls~n~~~~--~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~--~~p~~~~ 457 (490)
+|++++|++.+ .+|.- +..++.+...+..+ ..++.++.||+++|++++ .+|.++.
T Consensus 361 ~L~L~~N~l~~l~~ip~~------------------l~~L~~n~~~~~i~---~~~~~L~~L~ls~N~l~~~~~iP~sl~ 419 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPES------------------VEDLRMNSHLAEVP---ELPQNLKQLHVETNPLREFPDIPESVE 419 (454)
T ss_dssp EEECCSSCCSSCCCCCTT------------------CCEEECCC------------------------------------
T ss_pred EEECCCCCCCcCCCChHH------------------HHhhhhcccccccc---cccCcCCEEECCCCcCCccccchhhHh
Confidence 99999998766 43321 11111111111111 124678899999999998 7787654
Q ss_pred c
Q 011233 458 R 458 (490)
Q Consensus 458 ~ 458 (490)
.
T Consensus 420 ~ 420 (454)
T 1jl5_A 420 D 420 (454)
T ss_dssp -
T ss_pred h
Confidence 4
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=301.81 Aligned_cols=315 Identities=17% Similarity=0.152 Sum_probs=169.6
Q ss_pred ceeeecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCC
Q 011233 30 RYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSL 106 (490)
Q Consensus 30 ~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~ 106 (490)
+.++.+++.++.+ ..-.+++++|+|++|.+++++ ..|.++++|++|++++|.+.+..| .|..+++|++|++++|.+.
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 3455555555555 223456666666666666653 456666666666666666555444 5666666666666666555
Q ss_pred cccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccc
Q 011233 107 TETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLS 185 (490)
Q Consensus 107 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~ 185 (490)
...+..|.++++|++|++++|.+.+..|..+. +++|++|++++|.+.+.. +..+..++
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------~~~~~~l~ 152 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS---------------------HRAFSGLN 152 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC---------------------TTSSTTCT
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC---------------------hhhccCCC
Confidence 44445556666666666666654444444444 566666666655432211 12344555
Q ss_pred cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccccee
Q 011233 186 KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEEL 265 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 265 (490)
+|+.|++++|.+.+..+..+..+++|+.|++++ +.+. +..+..+..+++|++|++++|...+.+|.......+|++|
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~i~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH-LNIN--AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES-CCCC--EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCC-CcCc--EeChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 566666666555544444455566666666665 4543 2233345555566666666555555555544444455556
Q ss_pred EccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccc
Q 011233 266 RVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIR 345 (490)
Q Consensus 266 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (490)
++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..|..|.++++|+.|++++|+++
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 66555555533334555555555555555554444444455555555555555555444445555555555555555555
Q ss_pred cCC-ccccCCCCCCEEeCcCCCCC
Q 011233 346 EVP-ESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 346 ~~p-~~~~~l~~L~~L~Ls~n~l~ 368 (490)
++| ..|..+++|++|++++|.+.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred eeCHhHcCCCcccCEEEccCCCcc
Confidence 543 23444555555555555444
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=299.77 Aligned_cols=320 Identities=15% Similarity=0.103 Sum_probs=271.1
Q ss_pred ccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCC
Q 011233 49 LVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHC 127 (490)
Q Consensus 49 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 127 (490)
-+.+++++++++.+|..+. +++++|++++|.+.+..+ .|..+++|++|++++|.+.+..|..|+++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4678999999999987664 589999999999877666 8899999999999999988888999999999999999999
Q ss_pred CCCCcCCcc-cc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccc
Q 011233 128 ESLGSLPTS-IH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSI 205 (490)
Q Consensus 128 ~~~~~~p~~-~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~ 205 (490)
.+ ..+|.. +. +++|++|++++|.+.+.. |..+..+++|++|++++|.+.+..+..|
T Consensus 91 ~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 91 RL-KLIPLGVFTGLSNLTKLDISENKIVILL---------------------DYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp CC-CSCCTTSSTTCTTCCEEECTTSCCCEEC---------------------TTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred cC-CccCcccccCCCCCCEEECCCCccccCC---------------------hhHccccccCCEEECCCCccceeChhhc
Confidence 84 455554 44 899999999998654332 3456778899999999999888888889
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccc
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLAL 285 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 285 (490)
..+++|++|++++ |.++ +..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+
T Consensus 149 ~~l~~L~~L~l~~-n~l~--~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 149 SGLNSLEQLTLEK-CNLT--SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TTCTTCCEEEEES-CCCS--SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred cCCCCCCEEECCC-CcCc--ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 9999999999999 7774 333346888999999999999888877778899999999999998877777777666779
Q ss_pred cccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccccc-CCccccCCCCCCEEeCcC
Q 011233 286 LCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE-VPESLGQLSSIVRLDLSN 364 (490)
Q Consensus 286 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~ 364 (490)
|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++ .|..|..+++|++|++++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 9999999988776554678889999999999999888888889999999999999999999 568899999999999999
Q ss_pred CCCCCCch-hhhccCCCCEEecCCCCCccccc
Q 011233 365 NNLERTPA-SLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 365 n~l~~l~~-~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
|+++.++. .+..+++|++|++++|++.....
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 99998864 56789999999999999865543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-34 Score=293.49 Aligned_cols=329 Identities=16% Similarity=0.158 Sum_probs=253.7
Q ss_pred CCcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc-ccCCCCccEEEcCCCCcccccccccCCCCCCEEecC
Q 011233 1 MTELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLS 78 (490)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls 78 (490)
+++|++|+++++. ....+ ++ .+++|++|++++|.++++ +..+++|++|++++|.+++++ ++++++|++|+++
T Consensus 41 l~~L~~L~Ls~n~---l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 41 LATLTSLDCHNSS---ITDMT-GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HTTCCEEECCSSC---CCCCT-TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred cCCCCEEEccCCC---cccCh-hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 4689999999943 22334 56 889999999999999999 889999999999999999985 8899999999999
Q ss_pred CCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCc
Q 011233 79 HSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHP 157 (490)
Q Consensus 79 ~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~ 157 (490)
+|++.+ +| ++.+++|++|++++|.+.+. + ++++++|++|++++|...+.++ +. +++|++|++++|.+.+
T Consensus 115 ~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 115 TNKLTK-LD-VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp SSCCSC-CC-CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC---
T ss_pred CCcCCe-ec-CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce---
Confidence 999776 44 89999999999999998874 3 8899999999999997777773 44 8999999999986543
Q ss_pred ccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCC
Q 011233 158 AISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKS 237 (490)
Q Consensus 158 ~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~ 237 (490)
+| +..+++|+.|++++|.+.+. .++.+++|++|++++ |.++ .+| +..+++
T Consensus 185 -------------------l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~-N~l~---~ip--~~~l~~ 234 (457)
T 3bz5_A 185 -------------------LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS-NKLT---EID--VTPLTQ 234 (457)
T ss_dssp -------------------CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS-SCCS---CCC--CTTCTT
T ss_pred -------------------ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC-Cccc---ccC--ccccCC
Confidence 23 55678899999999888765 378889999999999 8885 355 778889
Q ss_pred CcEEEccCCCCCCccCccccCcc-------ccceeEccCccccccchhhHhhccccccccccccccccccCccccCcccc
Q 011233 238 LASLEIINCPKLERLPDELGNSK-------ALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYL 310 (490)
Q Consensus 238 L~~L~l~~n~~~~~~p~~~~~l~-------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 310 (490)
|++|++++|.+.+..+..+.+++ +|+.+++++|.+.+.+| +..+++|+.|++++|...+.+|. ..++|
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L 309 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGI 309 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCC
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcc
Confidence 99999999888776544444443 56677777777766666 46789999999999998888774 33455
Q ss_pred ceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhh-------------cc
Q 011233 311 TSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLY-------------QL 377 (490)
Q Consensus 311 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~-------------~l 377 (490)
+.|++++| ++|++|++++|++++++ ++.+++|++|++++|++++++. +. .+
T Consensus 310 ~~L~l~~~-------------~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~-L~~L~l~~n~l~g~~~~ 373 (457)
T 3bz5_A 310 TELDLSQN-------------PKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQT 373 (457)
T ss_dssp SCCCCTTC-------------TTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTT-GGGSSGGGTSEEEEEEE
T ss_pred eEechhhc-------------ccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccc-cccccccCCcEEeccee
Confidence 55555544 46777777777777763 6667777777777777765431 11 23
Q ss_pred CCCCEEecCCCCCcccccc
Q 011233 378 SSIKYLKLFDNNFKHRLLT 396 (490)
Q Consensus 378 ~~L~~L~ls~n~~~~~l~~ 396 (490)
..|+.+++++|++.|.+|.
T Consensus 374 ~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 374 ITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp EECCCBCCBTTBEEEECCT
T ss_pred eecCccccccCcEEEEcCh
Confidence 4556667777776666654
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.8e-34 Score=279.04 Aligned_cols=315 Identities=19% Similarity=0.249 Sum_probs=245.8
Q ss_pred ecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccch
Q 011233 34 WHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHS 111 (490)
Q Consensus 34 l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 111 (490)
+....+.++ ...+++|++|+++++.++.++. +..+++|++|++++|.+.+ ++.+..+++|++|++++|.+... .
T Consensus 29 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~L~~n~i~~~--~ 104 (347)
T 4fmz_A 29 LQKASVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKITDI--S 104 (347)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--G
T ss_pred ccccccCCcccchhcccccEEEEeCCccccchh-hhhcCCccEEEccCCcccc-chhhhcCCcCCEEEccCCcccCc--h
Confidence 333444444 5567888888888888888764 7778888888888887554 44488888888888888876653 3
Q ss_pred hhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEE
Q 011233 112 SIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLS 191 (490)
Q Consensus 112 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~ 191 (490)
.+.++++|++|++++|. ...++....+++|++|++++|...... ..+..+++|++|+
T Consensus 105 ~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~----------------------~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDL----------------------SPLSNMTGLNYLT 161 (347)
T ss_dssp GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCC----------------------GGGTTCTTCCEEE
T ss_pred HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCCcccc----------------------cchhhCCCCcEEE
Confidence 58888888899888887 444555333888888988887544322 2356778899999
Q ss_pred eccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCcc
Q 011233 192 IQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAA 271 (490)
Q Consensus 192 L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~ 271 (490)
+++|.+.+..+ +..+++|++|++++ +.++ .++. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~-n~l~---~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNY-NQIE---DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTT-SCCC---CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred ecCCCcCCchh--hccCCCCCEEEccC-Cccc---cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 99887765443 77889999999998 6774 4443 7788999999999987766544 7788999999999999
Q ss_pred ccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccccc-CCcc
Q 011233 272 IRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIRE-VPES 350 (490)
Q Consensus 272 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~ 350 (490)
+++ .+. +..+++|++|++++|.+.+. ..+..+++|++|++++|++.+. ..+..+++|+.|++++|++++ .|..
T Consensus 233 l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 233 ITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp CCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred cCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 987 444 88899999999999877653 4578889999999999987664 458889999999999999998 5577
Q ss_pred ccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCc
Q 011233 351 LGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 351 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
++.+++|++|++++|+++.++. +..+++|++|++++|++.
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 8999999999999999998875 888999999999999863
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-34 Score=290.40 Aligned_cols=344 Identities=21% Similarity=0.183 Sum_probs=242.9
Q ss_pred CCcceEEEecCCcCccccccCCCC-CCCc-------------cceeeeccccccccccCCCCccEEEcCCCCcccccccc
Q 011233 1 MTELRTLKFYGSENKCMVSSLEGV-PLTE-------------VRYFEWHQFPLETLNINGENLVSLKMPGRKVKQLWNDV 66 (490)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~-~~~~-------------L~~L~l~~~~l~~l~~~~~~L~~L~Ls~n~i~~l~~~~ 66 (490)
|++|++|+++++ .-....|..+ .+.+ +++|++++|.++++....++|++|++++|.++++|..
T Consensus 33 L~~L~~L~l~~n--~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~L~l~~n~l~~lp~~- 109 (454)
T 1jl5_A 33 VKSKTEYYNAWS--EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPEL- 109 (454)
T ss_dssp -CCHHHHHHHHH--HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSEEECCSSCCSSCCCC-
T ss_pred ccchhhhhccCC--cccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCEEEccCCcCCccccc-
Confidence 456777777772 2234556666 5554 4888888888887744467888888888888887743
Q ss_pred cCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEe
Q 011233 67 RNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELD 146 (490)
Q Consensus 67 ~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ 146 (490)
+++|++|++++|.+.+ ++.+ .++|++|++++|.+.+ +| +++++++|++|++++|.+. .+|.. .++|++|+
T Consensus 110 --~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~--~~~L~~L~ 179 (454)
T 1jl5_A 110 --PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL--PPSLEFIA 179 (454)
T ss_dssp --CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC--CTTCCEEE
T ss_pred --cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC--cccccEEE
Confidence 3678888888887554 3322 1678888888887765 66 5888888888888888744 35543 35788888
Q ss_pred ecCCCCCCCCcccccchhhhhhhhh---ccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCC
Q 011233 147 FVGCSKLKNHPAISSSLIPLLSLIK---VGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLK 223 (490)
Q Consensus 147 ls~n~~~~~~~~~~~~~~~~L~~~~---~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~ 223 (490)
+++|.+.+ +| .+..+. .|+.++ +.+..+|... ++|++|++++|.+. .+|. ++.+++|++|++++ |.++
T Consensus 180 L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~-N~l~ 250 (454)
T 1jl5_A 180 AGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADN-NLLK 250 (454)
T ss_dssp CCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCS-SCCS
T ss_pred CcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCC-CcCC
Confidence 88887766 44 333333 444444 5566666433 58999999999877 6774 89999999999999 8884
Q ss_pred CCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCcc
Q 011233 224 SLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSS 303 (490)
Q Consensus 224 ~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 303 (490)
.+|.. +++|++|++++|.+.+ +|.. .++|++|++++|++++ +|.. .++|++|++++|.+.+ ++.
T Consensus 251 ---~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~- 314 (454)
T 1jl5_A 251 ---TLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD- 314 (454)
T ss_dssp ---SCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC-
T ss_pred ---ccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC-
Confidence 45542 4799999999988766 5553 4789999999999988 4421 2689999999988765 222
Q ss_pred ccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCC---Cchhhhcc---
Q 011233 304 LCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLER---TPASLYQL--- 377 (490)
Q Consensus 304 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~---l~~~l~~l--- 377 (490)
..++|++|++++|++.+ +|.. +++|++|++++|+++++|. .+++|++|++++|++++ +|.++..+
T Consensus 315 --~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n 385 (454)
T 1jl5_A 315 --LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMN 385 (454)
T ss_dssp --CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred --CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhc
Confidence 12589999999999776 6654 5899999999999999987 47999999999999987 46666665
Q ss_pred ----------CCCCEEecCCCCCc
Q 011233 378 ----------SSIKYLKLFDNNFK 391 (490)
Q Consensus 378 ----------~~L~~L~ls~n~~~ 391 (490)
++|++|++++|++.
T Consensus 386 ~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 386 SHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp C-----------------------
T ss_pred ccccccccccCcCCEEECCCCcCC
Confidence 56666666666654
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.8e-34 Score=279.08 Aligned_cols=303 Identities=20% Similarity=0.193 Sum_probs=259.4
Q ss_pred CCCccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCC
Q 011233 25 PLTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGS 102 (490)
Q Consensus 25 ~~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~ 102 (490)
.++++++|+++++.+..+ +..+++|++|++++|.++.++. +..+++|++|++++|.+.. ++.+..+++|++|++++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNE 119 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcC
Confidence 678999999999999888 7889999999999999999876 8999999999999998554 67899999999999999
Q ss_pred CCCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccc
Q 011233 103 CSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIE 182 (490)
Q Consensus 103 n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~ 182 (490)
|.+.+..+ +..+++|++|++++|.....++....+++|++|++++|...+. +. +.
T Consensus 120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------------~~-~~ 174 (347)
T 4fmz_A 120 DNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV----------------------TP-IA 174 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC----------------------GG-GG
T ss_pred CcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc----------------------hh-hc
Confidence 98776543 8899999999999997677666643499999999999865432 11 56
Q ss_pred ccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccc
Q 011233 183 CLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKAL 262 (490)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 262 (490)
.+++|++|++++|.+.+..+ +..+++|+.+++++ +.++ .++. +..+++|++|++++|.+.+..+ +..+++|
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-n~l~---~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV-NQIT---DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS-SCCC---CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred cCCCCCEEEccCCccccccc--ccCCCccceeeccc-CCCC---CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 78899999999998765433 88999999999999 7774 3333 7889999999999988766544 8889999
Q ss_pred ceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCc
Q 011233 263 EELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGT 342 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (490)
++|++++|.+++ + ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+..+..++.+++|++|++++|
T Consensus 246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 999999999988 4 4688999999999999987664 34788999999999999998888888999999999999999
Q ss_pred ccccCCccccCCCCCCEEeCcCCCCC
Q 011233 343 AIREVPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 343 ~l~~~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
+++++++ +..+++|++|++++|.++
T Consensus 322 ~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 322 HITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCCGG-GGGCTTCSEESSSCC---
T ss_pred ccccccC-hhhhhccceeehhhhccc
Confidence 9999766 888999999999999886
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-34 Score=283.84 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=251.1
Q ss_pred CCCCccEEEcCCCCccccccc-ccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEE
Q 011233 45 NGENLVSLKMPGRKVKQLWND-VRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVL 122 (490)
Q Consensus 45 ~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 122 (490)
.++++++|+++++.++.+|.. +..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 457888888888888888744 6788889999998888766655 78888889999999888888777888888899999
Q ss_pred EccCCCCCCcCCccc-c-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccc
Q 011233 123 DLRHCESLGSLPTSI-H-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLEN 200 (490)
Q Consensus 123 ~Ls~n~~~~~~p~~~-~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~ 200 (490)
++++|. ...+|... . +++|++|++++|.+.+.. |..+..+++|++|++++|.+.+.
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCC---------------------TTTTSSCTTCCEEECCSSCCSBC
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccC---------------------hhhccCCCCCCEEECCCCcCCcc
Confidence 998887 44666654 4 888999999888654322 23466778899999999887654
Q ss_pred ccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhH
Q 011233 201 ISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESL 280 (490)
Q Consensus 201 ~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~ 280 (490)
.+..+++|++|++++ |.++. +...++|++|++++|.+... |.. ..++|++|++++|.+++ . ..+
T Consensus 181 ---~~~~l~~L~~L~l~~-n~l~~-------~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~-~-~~l 244 (390)
T 3o6n_A 181 ---DLSLIPSLFHANVSY-NLLST-------LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTD-T-AWL 244 (390)
T ss_dssp ---CGGGCTTCSEEECCS-SCCSE-------EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCC-C-GGG
T ss_pred ---ccccccccceeeccc-ccccc-------cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcc-c-HHH
Confidence 256778899999998 77742 23456899999999876554 332 25789999999999987 3 578
Q ss_pred hhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEE
Q 011233 281 GQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRL 360 (490)
Q Consensus 281 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L 360 (490)
..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ +|..+..+++|++|++++|+++++|..+..+++|++|
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 323 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence 899999999999999988889999999999999999998665 5666788999999999999999999888899999999
Q ss_pred eCcCCCCCCCchhhhccCCCCEEecCCCCCcc
Q 011233 361 DLSNNNLERTPASLYQLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 361 ~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~ 392 (490)
++++|+++.++ +..+++|++|++++|++.+
T Consensus 324 ~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 324 YLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence 99999999886 6788999999999999754
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=296.36 Aligned_cols=308 Identities=15% Similarity=0.128 Sum_probs=258.4
Q ss_pred CCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEE
Q 011233 45 NGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVL 122 (490)
Q Consensus 45 ~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 122 (490)
.+.+++.+++++|.+..+| ..+..+++|++|++++|.+.+..| .|+.+++|++|++++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4678899999999999888 446789999999999998877766 88899999999999999888888888999999999
Q ss_pred EccCCCCCCcCCccc-c-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccc
Q 011233 123 DLRHCESLGSLPTSI-H-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLEN 200 (490)
Q Consensus 123 ~Ls~n~~~~~~p~~~-~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~ 200 (490)
++++|.+. .+|... . +++|++|++++|.+.+.. |..+..+++|++|++++|.+.+.
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~---------------------~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCC---------------------TTTTTTCTTCCEEECTTSCCSBC
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCC---------------------hhhhhcCCcCcEEECcCCCCCCc
Confidence 99999844 566554 4 899999999998665432 23567788999999999887764
Q ss_pred ccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhH
Q 011233 201 ISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESL 280 (490)
Q Consensus 201 ~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~ 280 (490)
.++.+++|+.|++++ |.++. +...++|+.|++++|.+....+. + .++|+.|++++|.+++ +..+
T Consensus 187 ---~~~~l~~L~~L~l~~-n~l~~-------l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 187 ---DLSLIPSLFHANVSY-NLLST-------LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp ---CGGGCTTCSEEECCS-SCCSE-------EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGG
T ss_pred ---Chhhhhhhhhhhccc-Ccccc-------ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--Chhh
Confidence 256788999999999 77742 33456899999999876544332 2 3689999999999988 4678
Q ss_pred hhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEE
Q 011233 281 GQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRL 360 (490)
Q Consensus 281 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L 360 (490)
..+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|++|
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence 999999999999999999999999999999999999998766 5666788999999999999999999889999999999
Q ss_pred eCcCCCCCCCchhhhccCCCCEEecCCCCCccc
Q 011233 361 DLSNNNLERTPASLYQLSSIKYLKLFDNNFKHR 393 (490)
Q Consensus 361 ~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~~ 393 (490)
++++|.++.+| +..+++|+.|++++|++.+.
T Consensus 330 ~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 330 YLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 99999999886 67789999999999997654
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-33 Score=278.89 Aligned_cols=308 Identities=10% Similarity=0.074 Sum_probs=262.2
Q ss_pred CCCCCCCccceeeecccccccc----ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCC
Q 011233 21 LEGVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARN 94 (490)
Q Consensus 21 ~~~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~ 94 (490)
+..+.++++++++++++.++.+ +..+++|++|++++|.++.++ ..+..+++|++|++++|.+.+..| .++.+++
T Consensus 39 ~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 39 FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 3344678999999999999888 567899999999999999987 589999999999999999888777 6899999
Q ss_pred CcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhcc
Q 011233 95 LEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVG 173 (490)
Q Consensus 95 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~ 173 (490)
|++|++++|.+....+..++++++|++|++++|.+.+..|..+. +++|++|++++|.+.+.
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------ 180 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV------------------ 180 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC------------------
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc------------------
Confidence 99999999988765556679999999999999997666666666 99999999999865432
Q ss_pred CCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccC
Q 011233 174 IKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLP 253 (490)
Q Consensus 174 ~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p 253 (490)
.+..+++|+.|++++|.+.+ +...++|++|++++ +.++ .+|.. ..++|++|++++|.+.+.
T Consensus 181 ------~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~-n~l~---~~~~~--~~~~L~~L~l~~n~l~~~-- 241 (390)
T 3o6n_A 181 ------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH-NSIN---VVRGP--VNVELTILKLQHNNLTDT-- 241 (390)
T ss_dssp ------CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCS-SCCC---EEECC--CCSSCCEEECCSSCCCCC--
T ss_pred ------ccccccccceeecccccccc-----cCCCCcceEEECCC-Ceee---ecccc--ccccccEEECCCCCCccc--
Confidence 14467889999999987654 34556899999999 7774 33432 357999999999988764
Q ss_pred ccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccc
Q 011233 254 DELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKC 333 (490)
Q Consensus 254 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~ 333 (490)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++. .+|..+..+++
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~ 319 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence 568889999999999999999788999999999999999988765 4556678899999999999866 56777888999
Q ss_pred cceeeccCcccccCCccccCCCCCCEEeCcCCCCCC
Q 011233 334 LVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLER 369 (490)
Q Consensus 334 L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~ 369 (490)
|+.|++++|+++.++ +..+++|++|++++|.+..
T Consensus 320 L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 320 LENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred CCEEECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence 999999999999986 6789999999999999883
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.7e-33 Score=290.04 Aligned_cols=305 Identities=10% Similarity=0.072 Sum_probs=263.5
Q ss_pred CCCCCccceeeecccccccc----ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCc
Q 011233 23 GVPLTEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLE 96 (490)
Q Consensus 23 ~~~~~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~ 96 (490)
.+.+++++.+++++|.+..+ +..+++|++|+|++|.+++++ ..|..+++|++|++++|.+.+..| .|+.+++|+
T Consensus 47 ~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp SGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 34678899999999999888 567899999999999999986 589999999999999999888777 679999999
Q ss_pred EEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCC
Q 011233 97 ILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIK 175 (490)
Q Consensus 97 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~ 175 (490)
+|++++|.+.+..+..|+++++|++|++++|.+.+..|..+. +++|++|++++|.+.+.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------- 186 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-------------------- 186 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--------------------
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--------------------
Confidence 999999998876667789999999999999997777776777 99999999999865532
Q ss_pred cCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcc
Q 011233 176 ELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDE 255 (490)
Q Consensus 176 ~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~ 255 (490)
.+..+++|+.|++++|.+.+ +...++|+.|++++ |.++ .++..+ .++|+.|++++|.+.+ +..
T Consensus 187 ----~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~-n~l~---~~~~~~--~~~L~~L~L~~n~l~~--~~~ 249 (597)
T 3oja_B 187 ----DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASH-NSIN---VVRGPV--NVELTILKLQHNNLTD--TAW 249 (597)
T ss_dssp ----CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCS-SCCC---EEECSC--CSCCCEEECCSSCCCC--CGG
T ss_pred ----ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccC-Cccc---cccccc--CCCCCEEECCCCCCCC--Chh
Confidence 13457889999999987654 34567899999999 7774 333322 4689999999998877 467
Q ss_pred ccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccc
Q 011233 256 LGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLV 335 (490)
Q Consensus 256 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 335 (490)
+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.+++|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 8899999999999999999889999999999999999988776 5666788999999999999876 6777889999999
Q ss_pred eeeccCcccccCCccccCCCCCCEEeCcCCCCC
Q 011233 336 VLIVKGTAIREVPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 336 ~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
.|++++|.++++| +..+++|++|++++|.+.
T Consensus 328 ~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 328 NLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred EEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 9999999999986 677899999999999987
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.1e-31 Score=259.00 Aligned_cols=287 Identities=20% Similarity=0.216 Sum_probs=179.4
Q ss_pred CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEcc
Q 011233 47 ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLR 125 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 125 (490)
.+++.++++++.++.+|..+. +++++|++++|.+.+..+ .+..+++|++|++++|.+.+..|..++++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 378889999998888886554 688899999888776666 68888899999999888887778888888888888888
Q ss_pred CCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcc--cccc
Q 011233 126 HCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLE--NISS 203 (490)
Q Consensus 126 ~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~--~~~~ 203 (490)
+|. ...+|..+. ++|++|++++|.+.+.. +..+..+++|++|++++|.+.. ..+.
T Consensus 109 ~n~-l~~l~~~~~-~~L~~L~l~~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 109 KNQ-LKELPEKMP-KTLQELRVHENEITKVR---------------------KSVFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp SSC-CSBCCSSCC-TTCCEEECCSSCCCBBC---------------------HHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred CCc-CCccChhhc-ccccEEECCCCcccccC---------------------HhHhcCCccccEEECCCCcCCccCcChh
Confidence 887 345555433 55666666655432211 1223445555555555554432 3334
Q ss_pred cccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhc
Q 011233 204 SIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQL 283 (490)
Q Consensus 204 ~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 283 (490)
.+..+++|++|++++ +.+ ..+|.. +. ++|++|++++|++++..|..+..+
T Consensus 166 ~~~~l~~L~~L~l~~-n~l---~~l~~~------------------------~~--~~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 166 AFQGMKKLSYIRIAD-TNI---TTIPQG------------------------LP--PSLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp GGGGCTTCCEEECCS-SCC---CSCCSS------------------------CC--TTCSEEECTTSCCCEECTGGGTTC
T ss_pred hccCCCCcCEEECCC-Ccc---ccCCcc------------------------cc--ccCCEEECCCCcCCccCHHHhcCC
Confidence 444555555555555 444 223322 21 455555555555555445555555
Q ss_pred cccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-cccc------CCCC
Q 011233 284 ALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLG------QLSS 356 (490)
Q Consensus 284 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~------~l~~ 356 (490)
++|++|++++|.+.+..+..+..+++|++|++++|++. .+|.++..+++|++|++++|++++++ ..|. ..+.
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 66666666665555555555566666666666666544 55666666677777777777777654 3332 2366
Q ss_pred CCEEeCcCCCCC--CC-chhhhccCCCCEEecCCCC
Q 011233 357 IVRLDLSNNNLE--RT-PASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 357 L~~L~Ls~n~l~--~l-~~~l~~l~~L~~L~ls~n~ 389 (490)
++.|++++|.+. .+ |..+..+++++.+++++|+
T Consensus 295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccceEeecCcccccccCccccccccceeEEEecccC
Confidence 778888888776 23 5666777788888887774
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2.5e-31 Score=258.60 Aligned_cols=285 Identities=19% Similarity=0.204 Sum_probs=184.5
Q ss_pred CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEcc
Q 011233 47 ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLR 125 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 125 (490)
.+++.+++++++++.+|..+. ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..|..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 368899999999998886654 689999999998776656 78899999999999998888888889999999999999
Q ss_pred CCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCC-ccccccccCcEEEeccCCCcc--ccc
Q 011233 126 HCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELP-SSIECLSKLDRLSIQDCTRLE--NIS 202 (490)
Q Consensus 126 ~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~~~~--~~~ 202 (490)
+|. ...+|..+. ++|++|++++|.+.+ +| ..+..+++|++|++++|.+.. ..+
T Consensus 111 ~n~-l~~l~~~~~-~~L~~L~l~~n~i~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 111 KNH-LVEIPPNLP-SSLVELRIHDNRIRK----------------------VPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp SSC-CCSCCSSCC-TTCCEEECCSSCCCC----------------------CCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred CCc-CCccCcccc-ccCCEEECCCCccCc----------------------cCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 887 446666554 677777777764432 22 235566677777777766642 444
Q ss_pred ccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhh
Q 011233 203 SSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQ 282 (490)
Q Consensus 203 ~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 282 (490)
..+..+ +|++|++++ |.+ ..+|..+. + +|++|++++|.+++..+..+..
T Consensus 167 ~~~~~l-~L~~L~l~~-n~l---~~l~~~~~--~------------------------~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISE-AKL---TGIPKDLP--E------------------------TLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp TSSCSC-CCSCCBCCS-SBC---SSCCSSSC--S------------------------SCSCCBCCSSCCCCCCTTSSTT
T ss_pred ccccCC-ccCEEECcC-CCC---CccCcccc--C------------------------CCCEEECCCCcCCccCHHHhcC
Confidence 445555 666666666 555 23343221 3 4555555555555444444555
Q ss_pred ccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccC------CC
Q 011233 283 LALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQ------LS 355 (490)
Q Consensus 283 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~------l~ 355 (490)
+++|++|++++|.+.+..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++++ ..|.. .+
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 555555555555555444444555556666666666544 45555666666666666666666644 33332 35
Q ss_pred CCCEEeCcCCCCC--CC-chhhhccCCCCEEecCCCC
Q 011233 356 SIVRLDLSNNNLE--RT-PASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 356 ~L~~L~Ls~n~l~--~l-~~~l~~l~~L~~L~ls~n~ 389 (490)
+|+.|++++|.+. .+ |..+..+++|+.+++++|+
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6778888888776 33 5667778888888887774
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2.5e-31 Score=258.64 Aligned_cols=263 Identities=17% Similarity=0.177 Sum_probs=194.8
Q ss_pred CCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeec
Q 011233 71 NLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFV 148 (490)
Q Consensus 71 ~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls 148 (490)
+++.++++++.+. .+| .+ .++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+. +++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6888888887754 444 44 36788888888877776677788888888888888775444444444 5555555555
Q ss_pred CCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCC
Q 011233 149 GCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESL 228 (490)
Q Consensus 149 ~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l 228 (490)
+|. +. .+|..+. ++|++|++++ |.++ +..
T Consensus 111 ~n~---------------------------------------------l~-~l~~~~~--~~L~~L~l~~-n~i~--~~~ 139 (332)
T 2ft3_A 111 KNH---------------------------------------------LV-EIPPNLP--SSLVELRIHD-NRIR--KVP 139 (332)
T ss_dssp SSC---------------------------------------------CC-SCCSSCC--TTCCEEECCS-SCCC--CCC
T ss_pred CCc---------------------------------------------CC-ccCcccc--ccCCEEECCC-CccC--ccC
Confidence 543 32 2222222 4555555555 4552 222
Q ss_pred CcccccCCCCcEEEccCCCCC--CccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccC
Q 011233 229 PNNLCMFKSLASLEIINCPKL--ERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCM 306 (490)
Q Consensus 229 ~~~~~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 306 (490)
+..+..+++|++|++++|.+. +..|..+..+ +|++|++++|++++ +|..+. ++|++|++++|.+.+..+..+..
T Consensus 140 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~ 215 (332)
T 2ft3_A 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLR 215 (332)
T ss_dssp SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTT
T ss_pred HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcC
Confidence 233555666666666666553 3456666666 89999999999887 666544 79999999999998888888999
Q ss_pred ccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCc-hhhhc------cCC
Q 011233 307 LKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTP-ASLYQ------LSS 379 (490)
Q Consensus 307 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~------l~~ 379 (490)
+++|++|++++|++.+..+.++..+++|++|++++|+++.+|..+..+++|++|++++|+++.++ ..+.. .++
T Consensus 216 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 99999999999999888888899999999999999999999999999999999999999999875 33433 467
Q ss_pred CCEEecCCCCCc
Q 011233 380 IKYLKLFDNNFK 391 (490)
Q Consensus 380 L~~L~ls~n~~~ 391 (490)
|+.|++++|++.
T Consensus 296 l~~L~l~~N~~~ 307 (332)
T 2ft3_A 296 YNGISLFNNPVP 307 (332)
T ss_dssp BSEEECCSSSSC
T ss_pred ccceEeecCccc
Confidence 999999999964
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=3.2e-32 Score=262.43 Aligned_cols=257 Identities=18% Similarity=0.237 Sum_probs=163.3
Q ss_pred ccc--cccc-ccCC---CCccEEEcCCCCccc---ccccccCCCCCCEEecCC-CCCCCCCC-CcccCCCCcEEecCCCC
Q 011233 36 QFP--LETL-NING---ENLVSLKMPGRKVKQ---LWNDVRNLVNLKYIDLSH-SESLTKLP-DLSLARNLEILDLGSCS 104 (490)
Q Consensus 36 ~~~--l~~l-~~~~---~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~Ls~-n~~~~~~~-~~~~l~~L~~L~L~~n~ 104 (490)
.|. |.++ +... .++++|++++|.+++ +|..+.++++|++|++++ |.+.+.+| .++.+++|++|++++|.
T Consensus 33 ~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 112 (313)
T 1ogq_A 33 CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112 (313)
T ss_dssp TTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC
T ss_pred CCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe
Confidence 455 8888 4332 689999999999984 788899999999999995 88787777 78899999999999988
Q ss_pred CCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccc
Q 011233 105 SLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIEC 183 (490)
Q Consensus 105 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~ 183 (490)
+.+.+|..++++++|++|++++|.+.+.+|..+. +++|++|++++|.+.+. +|..+..
T Consensus 113 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---------------------~p~~l~~ 171 (313)
T 1ogq_A 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA---------------------IPDSYGS 171 (313)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE---------------------CCGGGGC
T ss_pred eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc---------------------CCHHHhh
Confidence 8888888899999999999988876666666555 56666666666543322 2233334
Q ss_pred cc-cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccc
Q 011233 184 LS-KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKAL 262 (490)
Q Consensus 184 l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 262 (490)
++ +|++|++++|.+.+.+|..+..++ |++|++++ |.+.+..|..+..+++|
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~---------------------------N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR---------------------------NMLEGDASVLFGSDKNT 223 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS---------------------------SEEEECCGGGCCTTSCC
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC---------------------------CcccCcCCHHHhcCCCC
Confidence 43 555555555555555555444444 55555555 44444444444445555
Q ss_pred ceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCc
Q 011233 263 EELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGT 342 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (490)
++|++++|.+++..|. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.. +.+++|+.+++++|
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 5555555555442222 444455555555555555555555555555555555555555555543 55555555555555
Q ss_pred c
Q 011233 343 A 343 (490)
Q Consensus 343 ~ 343 (490)
+
T Consensus 302 ~ 302 (313)
T 1ogq_A 302 K 302 (313)
T ss_dssp S
T ss_pred C
Confidence 4
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.3e-30 Score=253.44 Aligned_cols=265 Identities=20% Similarity=0.197 Sum_probs=193.6
Q ss_pred CCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEee
Q 011233 70 VNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDF 147 (490)
Q Consensus 70 ~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~l 147 (490)
.++++++++++.+.. +| .+. ++|++|++++|.+.+..+..++++++|++|++++|.+.+..|..+. +++|++|++
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 367888888776443 44 332 5788888888877776666788888888888888775555455555 666666666
Q ss_pred cCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCC
Q 011233 148 VGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLES 227 (490)
Q Consensus 148 s~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~ 227 (490)
++|.+. .+|..+. ++|++|++++|.+.+..+..+.+++
T Consensus 108 s~n~l~----------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~------------------ 145 (330)
T 1xku_A 108 SKNQLK----------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN------------------ 145 (330)
T ss_dssp CSSCCS----------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT------------------
T ss_pred CCCcCC----------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCc------------------
Confidence 665432 1222111 3455555555544444444444444
Q ss_pred CCcccccCCCCcEEEccCCCCC--CccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCcccc
Q 011233 228 LPNNLCMFKSLASLEIINCPKL--ERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLC 305 (490)
Q Consensus 228 l~~~~~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 305 (490)
+|++|++++|.+. +..+..+..+++|++|++++|.+++ +|..+. ++|++|++++|.+.+..+..+.
T Consensus 146 ---------~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~ 213 (330)
T 1xku_A 146 ---------QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLK 213 (330)
T ss_dssp ---------TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGT
T ss_pred ---------cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhc
Confidence 4555555444442 2445566777788888888888876 565443 7999999999999888888999
Q ss_pred CccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCch-hhh------ccC
Q 011233 306 MLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPA-SLY------QLS 378 (490)
Q Consensus 306 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~-~l~------~l~ 378 (490)
.+++|++|++++|++.+..+..+..+++|++|++++|+++.+|..+..+++|++|++++|+++.++. .+. ..+
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 9999999999999988888888999999999999999999999999999999999999999998853 333 247
Q ss_pred CCCEEecCCCCCc
Q 011233 379 SIKYLKLFDNNFK 391 (490)
Q Consensus 379 ~L~~L~ls~n~~~ 391 (490)
.++.+++++|++.
T Consensus 294 ~l~~l~l~~N~~~ 306 (330)
T 1xku_A 294 SYSGVSLFSNPVQ 306 (330)
T ss_dssp CCSEEECCSSSSC
T ss_pred cccceEeecCccc
Confidence 8999999999974
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.1e-34 Score=293.28 Aligned_cols=348 Identities=17% Similarity=0.119 Sum_probs=259.3
Q ss_pred CCccceeeecccccccc-----ccCCCCccEEEcCCCCcc-----cccccccCCCCCCEEecCCCCCCCCCC-Cc-ccCC
Q 011233 26 LTEVRYFEWHQFPLETL-----NINGENLVSLKMPGRKVK-----QLWNDVRNLVNLKYIDLSHSESLTKLP-DL-SLAR 93 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l-----~~~~~~L~~L~Ls~n~i~-----~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~-~~l~ 93 (490)
++++++|++++|.++.. +..+++|++|++++|.++ .++..+..+++|++|++++|.+....+ .+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46788889988887665 567889999999999987 356778888999999999988654322 22 2344
Q ss_pred ----CCcEEecCCCCCCc----ccchhhhccccCcEEEccCCCCCCcCCcccc------cCCccEEeecCCCCCCCCccc
Q 011233 94 ----NLEILDLGSCSSLT----ETHSSIQYLNKLEVLDLRHCESLGSLPTSIH------SKYIEELDFVGCSKLKNHPAI 159 (490)
Q Consensus 94 ----~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~------l~~L~~L~ls~n~~~~~~~~~ 159 (490)
+|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. .++|++|++++|.+.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 69999999998774 4578888999999999999885443333222 4579999999986554311
Q ss_pred ccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccccccccc-----CCCCCCEEecccCCCCCCCC--CCCccc
Q 011233 160 SSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIF-----KLKSLQYIEIKRCSNLKSLE--SLPNNL 232 (490)
Q Consensus 160 ~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~~n~l~~~~--~l~~~~ 232 (490)
..++..+..+++|++|++++|.+....+..+. ..++|++|++++ +.++..+ .++..+
T Consensus 160 ---------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l 223 (461)
T 1z7x_W 160 ---------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES-CGVTSDNCRDLCGIV 223 (461)
T ss_dssp ---------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT-SCCBTTHHHHHHHHH
T ss_pred ---------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC-CCCcHHHHHHHHHHH
Confidence 12334566778999999999887654333332 366899999999 6775211 256677
Q ss_pred ccCCCCcEEEccCCCCCCcc-----CccccCccccceeEccCcccccc----chhhHhhccccccccccccccccccCcc
Q 011233 233 CMFKSLASLEIINCPKLERL-----PDELGNSKALEELRVEGAAIRER----LPESLGQLALLCELKMIKCSSFESLPSS 303 (490)
Q Consensus 233 ~~l~~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 303 (490)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 78899999999998765432 22334578999999999998864 5677788999999999998876543333
Q ss_pred cc-----Cccccceeeccccccccc----CCcccCCccccceeeccCcccccC-Ccc----ccC-CCCCCEEeCcCCCCC
Q 011233 304 LC-----MLKYLTSLAIIDCKNFKR----LPNELGNLKCLVVLIVKGTAIREV-PES----LGQ-LSSIVRLDLSNNNLE 368 (490)
Q Consensus 304 ~~-----~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~-p~~----~~~-l~~L~~L~Ls~n~l~ 368 (490)
+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+++. +.. +.. .++|++|++++|+++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 32 236999999999987765 456677789999999999998872 222 222 679999999999998
Q ss_pred -----CCchhhhccCCCCEEecCCCCCc
Q 011233 369 -----RTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 369 -----~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
.+|..+..+++|++|++++|++.
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 56888889999999999999864
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.8e-31 Score=257.19 Aligned_cols=207 Identities=18% Similarity=0.231 Sum_probs=150.0
Q ss_pred CccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcccc
Q 011233 178 PSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELG 257 (490)
Q Consensus 178 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 257 (490)
|..++.+++|++|++++|.+.+.+|..+.++++|++|++++ |.++ +.+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~-N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-NALS--GTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS-SEEE--SCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC-CccC--CcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 33445556666666666666666666666666677777766 5654 45666666777777777777766666777777
Q ss_pred Ccc-ccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccce
Q 011233 258 NSK-ALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVV 336 (490)
Q Consensus 258 ~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 336 (490)
.++ .|++|++++|++++..|..+..++ |++|++++|.+.+..|..+..+++|++|++++|++.+.+|. +..+++|++
T Consensus 171 ~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~ 248 (313)
T 1ogq_A 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG 248 (313)
T ss_dssp CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCE
T ss_pred hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCE
Confidence 766 777777777777766777777776 77777777777777777777778888888888877666655 777788888
Q ss_pred eeccCccccc-CCccccCCCCCCEEeCcCCCCC-CCchhhhccCCCCEEecCCCCC
Q 011233 337 LIVKGTAIRE-VPESLGQLSSIVRLDLSNNNLE-RTPASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 337 L~L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~ls~n~~ 390 (490)
|++++|++++ +|.++..+++|++|++++|+++ .+|.. ..+++|+.+++++|+.
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 8888888875 7777888888888888888887 56654 7788888888888874
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.4e-33 Score=282.33 Aligned_cols=372 Identities=19% Similarity=0.187 Sum_probs=274.8
Q ss_pred CcceEEEecCCcCccccccCCCC-CCCccceeeecccccccc--------ccCCCCccEEEcCCCCcccc-c-ccccCCC
Q 011233 2 TELRTLKFYGSENKCMVSSLEGV-PLTEVRYFEWHQFPLETL--------NINGENLVSLKMPGRKVKQL-W-NDVRNLV 70 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~l--------~~~~~~L~~L~Ls~n~i~~l-~-~~~~~l~ 70 (490)
++|++|++++..... ......+ .+++|++|++++|.+++. +..+++|++|++++|.++.. + .....++
T Consensus 3 ~~l~~L~Ls~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCc-hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 579999999843211 1112223 678999999999998843 56779999999999999763 2 2333455
Q ss_pred ----CCCEEecCCCCCCC----CCC-CcccCCCCcEEecCCCCCCcccchhhhc-----cccCcEEEccCCCCCCcC---
Q 011233 71 ----NLKYIDLSHSESLT----KLP-DLSLARNLEILDLGSCSSLTETHSSIQY-----LNKLEVLDLRHCESLGSL--- 133 (490)
Q Consensus 71 ----~L~~L~Ls~n~~~~----~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~Ls~n~~~~~~--- 133 (490)
+|++|++++|.+.. .++ .+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999998763 334 6789999999999999876655544442 568999999999866533
Q ss_pred -Ccccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccc-cccccCcEEEeccCCCccc----cccccc
Q 011233 134 -PTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSI-ECLSKLDRLSIQDCTRLEN----ISSSIF 206 (490)
Q Consensus 134 -p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~-~~l~~L~~L~L~~n~~~~~----~~~~~~ 206 (490)
+..+. +++|++|++++|.+....+. .+...+ ...++|++|++++|.+.+. ++..+.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~-----------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 224 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVR-----------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHH-----------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHH-----------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH
Confidence 44444 79999999999864332111 011111 1356899999999988764 566788
Q ss_pred CCCCCCEEecccCCCCCCCC--CC-CcccccCCCCcEEEccCCCCCCc----cCccccCccccceeEccCccccccchhh
Q 011233 207 KLKSLQYIEIKRCSNLKSLE--SL-PNNLCMFKSLASLEIINCPKLER----LPDELGNSKALEELRVEGAAIRERLPES 279 (490)
Q Consensus 207 ~l~~L~~L~L~~~n~l~~~~--~l-~~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~ls~n~l~~~~~~~ 279 (490)
.+++|++|++++ |.++..+ .+ +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+++..+..
T Consensus 225 ~~~~L~~L~Ls~-n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 303 (461)
T 1z7x_W 225 SKASLRELALGS-NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303 (461)
T ss_dssp HCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred hCCCccEEeccC-CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH
Confidence 899999999999 6764211 11 12223588999999999987664 6777788999999999999998655555
Q ss_pred Hhhc-----cccccccccccccccc----cCccccCccccceeecccccccccCCcccCC-----ccccceeeccCcccc
Q 011233 280 LGQL-----ALLCELKMIKCSSFES----LPSSLCMLKYLTSLAIIDCKNFKRLPNELGN-----LKCLVVLIVKGTAIR 345 (490)
Q Consensus 280 ~~~l-----~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~-----l~~L~~L~L~~n~l~ 345 (490)
+... ++|++|++++|.+.+. ++..+..+++|++|++++|++.+..+..+.. .++|++|++++|.++
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 5543 6999999999998765 5566677899999999999887654444432 679999999999999
Q ss_pred -----cCCccccCCCCCCEEeCcCCCCCCC-----chhhh-ccCCCCEEecCCCCCcc
Q 011233 346 -----EVPESLGQLSSIVRLDLSNNNLERT-----PASLY-QLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 346 -----~~p~~~~~l~~L~~L~Ls~n~l~~l-----~~~l~-~l~~L~~L~ls~n~~~~ 392 (490)
.+|..+..+++|++|++++|+++.. ...+. ...+|+.|++.++.+..
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 4788888899999999999999833 22222 24579999998887643
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.5e-28 Score=238.19 Aligned_cols=231 Identities=23% Similarity=0.340 Sum_probs=152.2
Q ss_pred CCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEc
Q 011233 46 GENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDL 124 (490)
Q Consensus 46 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 124 (490)
.+++++|+|++|.++.+|..+..+++|++|++++|.+. .+| .++.+++|++|++++|.+. .+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 46777777777777777766666777777777777655 455 5667777777777776655 55666667777777777
Q ss_pred cCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccccccc
Q 011233 125 RHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSS 204 (490)
Q Consensus 125 s~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~ 204 (490)
++|...+.+|..+. . ..++..+..+++|++|++++|.+. .+|..
T Consensus 158 ~~n~~~~~~p~~~~-----------------------~------------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~ 201 (328)
T 4fcg_A 158 RACPELTELPEPLA-----------------------S------------TDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201 (328)
T ss_dssp EEETTCCCCCSCSE-----------------------E------------EC-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred CCCCCccccChhHh-----------------------h------------ccchhhhccCCCCCEEECcCCCcC-cchHh
Confidence 66665555554332 0 011223456677777777777665 56666
Q ss_pred ccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcc
Q 011233 205 IFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLA 284 (490)
Q Consensus 205 ~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 284 (490)
++.+++|++|++++ |.+ ..+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++
T Consensus 202 l~~l~~L~~L~L~~-N~l---~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 202 IANLQNLKSLKIRN-SPL---SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp GGGCTTCCEEEEES-SCC---CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred hcCCCCCCEEEccC-CCC---CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 77777777777777 666 34566667777777777777777777777666677777777777666666666666666
Q ss_pred ccccccccccccccccCccccCccccceeecccc
Q 011233 285 LLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDC 318 (490)
Q Consensus 285 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n 318 (490)
+|++|++++|+..+.+|..++.+++|+.+++..+
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 6666666666666666666666666666665544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=241.71 Aligned_cols=279 Identities=19% Similarity=0.139 Sum_probs=176.6
Q ss_pred CCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEc
Q 011233 46 GENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDL 124 (490)
Q Consensus 46 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 124 (490)
|+.....++++++++.+|..+. ++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..|..++++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4444557788888888876554 478888888887665544 6777888888888887777766777777777777777
Q ss_pred cCCCCCCcCCcc-cc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccccc
Q 011233 125 RHCESLGSLPTS-IH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENIS 202 (490)
Q Consensus 125 s~n~~~~~~p~~-~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~ 202 (490)
++|.+. .+|.. +. +++|++|++++| .+.+..+
T Consensus 108 s~n~l~-~~~~~~~~~l~~L~~L~L~~n---------------------------------------------~l~~l~~ 141 (353)
T 2z80_A 108 SYNYLS-NLSSSWFKPLSSLTFLNLLGN---------------------------------------------PYKTLGE 141 (353)
T ss_dssp CSSCCS-SCCHHHHTTCTTCSEEECTTC---------------------------------------------CCSSSCS
T ss_pred CCCcCC-cCCHhHhCCCccCCEEECCCC---------------------------------------------CCcccCc
Confidence 777633 33332 22 444444444444 3332111
Q ss_pred -ccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchh-hH
Q 011233 203 -SSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPE-SL 280 (490)
Q Consensus 203 -~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~-~~ 280 (490)
..+..+++|++|++++|+.+. ...+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++. +|. .+
T Consensus 142 ~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~ 218 (353)
T 2z80_A 142 TSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFV 218 (353)
T ss_dssp SCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHH
T ss_pred hhhhccCCCCcEEECCCCcccc--ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhh
Confidence 234455555555555522332 2223445556666666666666666666667777777777777777765 443 34
Q ss_pred hhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCc-----ccccCCccccCCC
Q 011233 281 GQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGT-----AIREVPESLGQLS 355 (490)
Q Consensus 281 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n-----~l~~~p~~~~~l~ 355 (490)
..+++|++|++++|.+.+..+..+.. ......++.++++++ .+..+|+++..++
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred hhcccccEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhccc
Confidence 45677777777776655433222111 011223344444444 4444788889999
Q ss_pred CCCEEeCcCCCCCCCchhh-hccCCCCEEecCCCCCcccccc
Q 011233 356 SIVRLDLSNNNLERTPASL-YQLSSIKYLKLFDNNFKHRLLT 396 (490)
Q Consensus 356 ~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~ls~n~~~~~l~~ 396 (490)
+|++|++++|+++.+|..+ ..+++|++|++++|++.+..+.
T Consensus 278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9999999999999998764 7899999999999998877653
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.2e-28 Score=232.68 Aligned_cols=128 Identities=26% Similarity=0.322 Sum_probs=65.0
Q ss_pred ccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceee
Q 011233 259 SKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLI 338 (490)
Q Consensus 259 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 338 (490)
+++|++|++++|+++. +|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 182 l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 4444555555544442 44444444555555555444432 333344455555555555555555555555555555555
Q ss_pred ccCccccc-CCccccCCCCCCEEeCcCCCCC-CCchhhhccCCCCEEecCCC
Q 011233 339 VKGTAIRE-VPESLGQLSSIVRLDLSNNNLE-RTPASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 339 L~~n~l~~-~p~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~ls~n 388 (490)
+++|.+.+ +|..++.+++|++|++++|++. .+|..+..+++|+.+++..+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 55554444 5555555555555555554443 44555555555555555544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=230.06 Aligned_cols=248 Identities=15% Similarity=0.113 Sum_probs=167.4
Q ss_pred cEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcc--cchhhhccccCcEEEccC
Q 011233 50 VSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTE--THSSIQYLNKLEVLDLRH 126 (490)
Q Consensus 50 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~Ls~ 126 (490)
+.+++++++++.+|..+. ++|++|++++|.+....+ .+..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 567888888888886554 588888888888664444 467888888888888877633 366777788888888888
Q ss_pred CCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccc
Q 011233 127 CESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSI 205 (490)
Q Consensus 127 n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~ 205 (490)
|. ...+|..+. +++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+..+..+
T Consensus 88 n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~--------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 146 (306)
T 2z66_A 88 NG-VITMSSNFLGLEQLEHLDFQHSNLKQMSE--------------------FSVFLSLRNLIYLDISHTHTRVAFNGIF 146 (306)
T ss_dssp CS-EEEEEEEEETCTTCCEEECTTSEEESSTT--------------------TTTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred Cc-cccChhhcCCCCCCCEEECCCCccccccc--------------------chhhhhccCCCEEECCCCcCCccchhhc
Confidence 87 345565555 7777777777764332211 0245566777777777777776666667
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccc
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLAL 285 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 285 (490)
..+++|++|++++ |.++. ..+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++
T Consensus 147 ~~l~~L~~L~l~~-n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 147 NGLSSLEVLKMAG-NSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTCTTCCEEECTT-CEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred ccCcCCCEEECCC-Ccccc-ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 7777777777777 55531 135666666777777777777666666666666777777777777776644445666666
Q ss_pred cccccccccccccccCccccCcc-ccceeecccccccc
Q 011233 286 LCELKMIKCSSFESLPSSLCMLK-YLTSLAIIDCKNFK 322 (490)
Q Consensus 286 L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~Ls~n~~~~ 322 (490)
|++|++++|.+.+..+..+..++ +|++|++++|++.+
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 66666666666666665555553 66666666666544
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.5e-30 Score=267.54 Aligned_cols=386 Identities=16% Similarity=0.116 Sum_probs=270.3
Q ss_pred CcceEEEecCCcCcc-ccccCCCC-------------CCCccceeeecccccccc----ccC-CCC-ccEEEcCCCC-cc
Q 011233 2 TELRTLKFYGSENKC-MVSSLEGV-------------PLTEVRYFEWHQFPLETL----NIN-GEN-LVSLKMPGRK-VK 60 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~-~~~~~~~~-------------~~~~L~~L~l~~~~l~~l----~~~-~~~-L~~L~Ls~n~-i~ 60 (490)
++||+|++++..... ....+..+ ..++|++|++++|.+++. +.. +++ |++|++++|. ++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 578999998743110 11111111 467899999999987654 222 344 9999999886 22
Q ss_pred --cccccccCCCCCCEEecCCCCCCCC----CC-CcccCCCCcEEecCCCCCC----cccchhhhccccCcEEEccCCCC
Q 011233 61 --QLWNDVRNLVNLKYIDLSHSESLTK----LP-DLSLARNLEILDLGSCSSL----TETHSSIQYLNKLEVLDLRHCES 129 (490)
Q Consensus 61 --~l~~~~~~l~~L~~L~Ls~n~~~~~----~~-~~~~l~~L~~L~L~~n~~~----~~~~~~l~~l~~L~~L~Ls~n~~ 129 (490)
+++.....+++|++|++++|.+.+. ++ .+..+++|++|++++|.+. ..++..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 2344456889999999999986554 22 3457899999999999876 34556677899999999999874
Q ss_pred CCcCCcccc-cCCccEEeecCCCCCCC---Ccccccchhhhhhhh---hccCCcCCccccccccCcEEEeccCCCccccc
Q 011233 130 LGSLPTSIH-SKYIEELDFVGCSKLKN---HPAISSSLIPLLSLI---KVGIKELPSSIECLSKLDRLSIQDCTRLENIS 202 (490)
Q Consensus 130 ~~~~p~~~~-l~~L~~L~ls~n~~~~~---~~~~~~~~~~~L~~~---~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~ 202 (490)
..+|..+. +++|++|+++.+..... .+..+.... .|+.+ +.....+|..+..+++|++|++++|.+.+...
T Consensus 233 -~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 -LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR-KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp -GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT-TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred -HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc-cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence 44666666 89999999986433211 112222222 33322 23445667778889999999999998654433
Q ss_pred -ccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccC----------CCCCC-c-cCccccCccccceeEccC
Q 011233 203 -SSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIIN----------CPKLE-R-LPDELGNSKALEELRVEG 269 (490)
Q Consensus 203 -~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~----------n~~~~-~-~p~~~~~l~~L~~L~ls~ 269 (490)
..+..+++|++|++++ + +.. ..++.....+++|++|++++ +...+ . ++.....+++|++|+++.
T Consensus 311 ~~~~~~~~~L~~L~L~~-~-~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRN-V-IGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp HHHHTTCTTCCEEEEEG-G-GHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred HHHHHhCcCCCEEeccC-c-cCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 3467899999999985 2 221 33444456789999999994 43332 2 233345589999999998
Q ss_pred ccccccchhhHhh-ccccccccccc----cccccc-----cCccccCccccceeeccccc--ccccCCccc-CCccccce
Q 011233 270 AAIRERLPESLGQ-LALLCELKMIK----CSSFES-----LPSSLCMLKYLTSLAIIDCK--NFKRLPNEL-GNLKCLVV 336 (490)
Q Consensus 270 n~l~~~~~~~~~~-l~~L~~L~l~~----n~~~~~-----~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~-~~l~~L~~ 336 (490)
+.+++..+..+.. +++|++|+++. +.+.+. ++..+.++++|++|+++.|. +.+..+..+ ..+++|++
T Consensus 388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~ 467 (592)
T 3ogk_B 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467 (592)
T ss_dssp SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence 9998866777765 89999999973 333331 33335678999999997654 444433334 34789999
Q ss_pred eeccCccccc--CCccccCCCCCCEEeCcCCCCC--CCchhhhccCCCCEEecCCCCCcc
Q 011233 337 LIVKGTAIRE--VPESLGQLSSIVRLDLSNNNLE--RTPASLYQLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 337 L~L~~n~l~~--~p~~~~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~ls~n~~~~ 392 (490)
|++++|++++ ++..+..+++|++|++++|.++ .++..+..+++|++|++++|++..
T Consensus 468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 9999999987 6667788999999999999987 246556779999999999999653
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1e-26 Score=223.31 Aligned_cols=225 Identities=20% Similarity=0.177 Sum_probs=114.8
Q ss_pred Cccceeeecccccccc----ccCCCCccEEEcCCCCcccc---cccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEe
Q 011233 27 TEVRYFEWHQFPLETL----NINGENLVSLKMPGRKVKQL---WNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILD 99 (490)
Q Consensus 27 ~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l---~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~ 99 (490)
+++++|++++|.++.+ +..+++|++|++++|.++.+ +..+..+++|++|++++|.+.+..+.+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3555555555555544 34455555555555555433 3444445555555555555433222455555555555
Q ss_pred cCCCCCCcccc-hhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcC
Q 011233 100 LGSCSSLTETH-SSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKEL 177 (490)
Q Consensus 100 L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~l 177 (490)
+++|.+.+..+ ..+..+++|++|++++|.+.+..+..+. +++|++|++++|.+.+. .+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~ 167 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------FL 167 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--------------------EE
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--------------------cc
Confidence 55555444333 3455555555555555554444444443 55555555555432210 12
Q ss_pred CccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcccc
Q 011233 178 PSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELG 257 (490)
Q Consensus 178 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 257 (490)
|..+..+++|++|++++|.+.+..+..+..+++|++|++++ |.++ +..+..+..+++|++|++++|.+.+..|..+.
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCS--BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-CccC--ccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 33444555555666655555555455555555555666555 4553 22222445555555555555555555555555
Q ss_pred Ccc-ccceeEccCccccc
Q 011233 258 NSK-ALEELRVEGAAIRE 274 (490)
Q Consensus 258 ~l~-~L~~L~ls~n~l~~ 274 (490)
.++ +|++|++++|.+++
T Consensus 245 ~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCTTCCEEECTTCCEEC
T ss_pred hhhccCCEEEccCCCeec
Confidence 552 55555555555554
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.1e-26 Score=217.69 Aligned_cols=221 Identities=15% Similarity=0.086 Sum_probs=110.7
Q ss_pred ceeeecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCC-C
Q 011233 30 RYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCS-S 105 (490)
Q Consensus 30 ~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~-~ 105 (490)
+.++.+++.++.+ ....+++++|++++|.++.++ ..+..+++|++|++++|.+.+..+ .+..+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 4455555555555 333455666666666666554 345556666666666665544434 55556666666666654 3
Q ss_pred CcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccccc
Q 011233 106 LTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECL 184 (490)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l 184 (490)
....|..+..+++|++|++++|.+.+..|..+. +++|++|++++|.+.+.. +..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------~~~~~~l 152 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP---------------------DDTFRDL 152 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------------TTTTTTC
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC---------------------HhHhccC
Confidence 333355555566666666665554433343333 555555555554332111 1123344
Q ss_pred ccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccce
Q 011233 185 SKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEE 264 (490)
Q Consensus 185 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 264 (490)
++|++|++++|.+.+..+..+..+++|++|++++ |.++ +..|..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ-NRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCC--EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCC-Cccc--ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 4555555555544443333444555555555555 4443 223444444555555555554444433334444555555
Q ss_pred eEccCccccc
Q 011233 265 LRVEGAAIRE 274 (490)
Q Consensus 265 L~ls~n~l~~ 274 (490)
|++++|.+..
T Consensus 230 L~l~~N~~~c 239 (285)
T 1ozn_A 230 LRLNDNPWVC 239 (285)
T ss_dssp EECCSSCEEC
T ss_pred EeccCCCccC
Confidence 5555555443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.9e-27 Score=229.74 Aligned_cols=271 Identities=17% Similarity=0.113 Sum_probs=203.9
Q ss_pred Cccceeeecccccccc-ccCCCCccEEEcCCCCcccccc-cccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCC
Q 011233 27 TEVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLWN-DVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSC 103 (490)
Q Consensus 27 ~~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n 103 (490)
+.....+.+++.++.+ ..-.++|++|++++|.+++++. .+.++++|++|++++|.+.+..+ .+..+++|++|++++|
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 3445588888999888 4445799999999999999874 89999999999999999877666 7999999999999999
Q ss_pred CCCcccchhhhccccCcEEEccCCCCCCcCCc--ccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcc
Q 011233 104 SSLTETHSSIQYLNKLEVLDLRHCESLGSLPT--SIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSS 180 (490)
Q Consensus 104 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~ 180 (490)
.+.+..+..++++++|++|++++|.+ ..+|. .+. +++|++|++++|...+.+ .+..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--------------------~~~~ 169 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKI--------------------QRKD 169 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEE--------------------CTTT
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCcccccc--------------------CHHH
Confidence 98876667799999999999999984 46666 444 999999999998533221 1245
Q ss_pred ccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcc-cccCCCCcEEEccCCCCCCccCcccc--
Q 011233 181 IECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNN-LCMFKSLASLEIINCPKLERLPDELG-- 257 (490)
Q Consensus 181 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~-~~~l~~L~~L~l~~n~~~~~~p~~~~-- 257 (490)
+..+++|++|++++|.+.+..+..+..+++|++|++++ |.+ +.+|.. +..+++|++|++++|.+.+..+..+.
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l---~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM-KQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC-SCS---TTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC-Ccc---ccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 67788999999999998888888899999999999999 777 455554 34588999999999887765444332
Q ss_pred -CccccceeEccCccccc----cchhhHhhccccccccccccccccccCcc-ccCccccceeeccccccccc
Q 011233 258 -NSKALEELRVEGAAIRE----RLPESLGQLALLCELKMIKCSSFESLPSS-LCMLKYLTSLAIIDCKNFKR 323 (490)
Q Consensus 258 -~l~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ 323 (490)
..+.++.++++++.+++ .+|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|++.+.
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 24556666666666554 25556666667777777766655 33333 35666666666666665443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.9e-26 Score=219.21 Aligned_cols=267 Identities=19% Similarity=0.151 Sum_probs=208.4
Q ss_pred ccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCC
Q 011233 49 LVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHC 127 (490)
Q Consensus 49 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 127 (490)
-+++++++++++.+|..+ .++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..|..++++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 378999999999998655 4699999999999877665 6899999999999999988888899999999999999999
Q ss_pred CCCCcC-Ccccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccc
Q 011233 128 ESLGSL-PTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSI 205 (490)
Q Consensus 128 ~~~~~~-p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~ 205 (490)
...+.+ |..+. +++|++|++++|.+.+.. |..+..+++|++|++++|.+.+..+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELG---------------------PGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCC---------------------TTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEEC---------------------HhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 745555 55666 899999999998654332 3456678899999999998887666678
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccc
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLAL 285 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 285 (490)
..+++|++|++++ |.++ +..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++
T Consensus 150 ~~l~~L~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 150 RDLGNLTHLFLHG-NRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTCTTCCEEECCS-SCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred ccCCCccEEECCC-Cccc--ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 8899999999999 7774 223345788899999999999888888888888999999999999998866677888999
Q ss_pred cccccccccccccccCccccCccccceeecccccccccCCcccCC--ccccceeeccCc
Q 011233 286 LCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGN--LKCLVVLIVKGT 342 (490)
Q Consensus 286 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~--l~~L~~L~L~~n 342 (490)
|++|++++|.+....+.. .-...++.+..+.+.+....|..+.+ +..++..++.+|
T Consensus 227 L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 999999998876543321 11234555666666666666765543 344555555544
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.1e-28 Score=235.81 Aligned_cols=203 Identities=18% Similarity=0.162 Sum_probs=164.5
Q ss_pred ccccCcEEEeccCCCcccccccc--cCCCCCCEEecccCCCCCCCCCCCcccccC-----CCCcEEEccCCCCCCccCcc
Q 011233 183 CLSKLDRLSIQDCTRLENISSSI--FKLKSLQYIEIKRCSNLKSLESLPNNLCMF-----KSLASLEIINCPKLERLPDE 255 (490)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l-----~~L~~L~l~~n~~~~~~p~~ 255 (490)
++++|++|++++|.+.+.+|..+ ..+++|++|++++ |.++ ..|..+..+ ++|++|++++|.+.+..|..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~---~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWA---TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCS---SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCc---chhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence 57788888888888888887765 7888888888888 7774 336667666 88999999998888777788
Q ss_pred ccCccccceeEccCcccccc--chhhH--hhcccccccccccccccc--ccC-ccccCccccceeecccccccccCC-cc
Q 011233 256 LGNSKALEELRVEGAAIRER--LPESL--GQLALLCELKMIKCSSFE--SLP-SSLCMLKYLTSLAIIDCKNFKRLP-NE 327 (490)
Q Consensus 256 ~~~l~~L~~L~ls~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~--~~~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~ 327 (490)
++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+.+ .++ ..+..+++|++|++++|++.+..| ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 88889999999999987664 23344 778899999999888763 222 334577899999999999888764 45
Q ss_pred cCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCcc
Q 011233 328 LGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 328 ~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~ 392 (490)
+..+++|++|++++|+++.+|..+. ++|++|++++|+++.+|. +..+++|++|++++|++.+
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 6778999999999999999987776 899999999999998876 8889999999999998754
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.1e-26 Score=231.37 Aligned_cols=243 Identities=20% Similarity=0.227 Sum_probs=146.6
Q ss_pred CccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccC
Q 011233 48 NLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRH 126 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 126 (490)
..+.+++++.+++.+|..+. +++++|++++|.+.+..+ .|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888886654 588888888888777656 788888888888888888877778888888888888888
Q ss_pred CCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCC-ccccccccCcEEEeccCCCcccccc-
Q 011233 127 CESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELP-SSIECLSKLDRLSIQDCTRLENISS- 203 (490)
Q Consensus 127 n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~~~- 203 (490)
|.+.+..+..+. +++|++|++++|.+.. +| ..+..+++|++|++++|+..+.++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIES----------------------IPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCE----------------------ECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcce----------------------eCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 874433333344 6677777776664321 22 2344556666666666554444443
Q ss_pred cccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhc
Q 011233 204 SIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQL 283 (490)
Q Consensus 204 ~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 283 (490)
.|..+++|++|++++ |.++ .+| .+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+
T Consensus 191 ~~~~l~~L~~L~L~~-n~l~---~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGM-CNIK---DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp TTTTCTTCCEEECTT-SCCS---SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hccCCCCCCEEECCC-Cccc---ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 355566666666666 5552 222 24445555555555555544444455555555555555555554444444444
Q ss_pred cccccccccccccccccCccccCccccceeeccccc
Q 011233 284 ALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCK 319 (490)
Q Consensus 284 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~ 319 (490)
++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 455555555444443333334444444444444444
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.5e-25 Score=231.92 Aligned_cols=260 Identities=22% Similarity=0.234 Sum_probs=155.1
Q ss_pred CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccC
Q 011233 47 ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRH 126 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 126 (490)
.++++|++++|+++.+|..+. ++|++|++++|.+. .+|. .+++|++|++++|.+.+ +|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence 467888888888888886655 68888888888755 3444 56788888888877553 444 567788888877
Q ss_pred CCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCccccccccc
Q 011233 127 CESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIF 206 (490)
Q Consensus 127 n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 206 (490)
|. ...+|. .+++|+.|++++|.+. .+|.. +++|++|++++|.+.+ +|.
T Consensus 111 N~-l~~l~~--~l~~L~~L~L~~N~l~----------------------~lp~~---l~~L~~L~Ls~N~l~~-l~~--- 158 (622)
T 3g06_A 111 NP-LTHLPA--LPSGLCKLWIFGNQLT----------------------SLPVL---PPGLQELSVSDNQLAS-LPA--- 158 (622)
T ss_dssp CC-CCCCCC--CCTTCCEEECCSSCCS----------------------CCCCC---CTTCCEEECCSSCCSC-CCC---
T ss_pred Cc-CCCCCC--CCCCcCEEECCCCCCC----------------------cCCCC---CCCCCEEECcCCcCCC-cCC---
Confidence 76 334454 4566777777766432 22221 2556666666665543 232
Q ss_pred CCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccc
Q 011233 207 KLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALL 286 (490)
Q Consensus 207 ~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 286 (490)
.+++|+.|++++ |.++ .+| ..+++|+.|++++|.+.+ +|.. .++|+.|++++|.++. +|.
T Consensus 159 ~~~~L~~L~L~~-N~l~---~l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~-------- 218 (622)
T 3g06_A 159 LPSELCKLWAYN-NQLT---SLP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA-------- 218 (622)
T ss_dssp CCTTCCEEECCS-SCCS---CCC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC--------
T ss_pred ccCCCCEEECCC-CCCC---CCc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC--------
Confidence 234566666666 5553 333 234556666666554433 3321 2455555555555543 332
Q ss_pred ccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCC
Q 011233 287 CELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNN 366 (490)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~ 366 (490)
.+++|+.|++++|++.+ +| ..+++|+.|++++|.++.+|. .+++|++|++++|+
T Consensus 219 -------------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 219 -------------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp -------------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred -------------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC
Confidence 12455556666555443 33 334566666666666666665 45666666666666
Q ss_pred CCCCchhhhccCCCCEEecCCCCCccc
Q 011233 367 LERTPASLYQLSSIKYLKLFDNNFKHR 393 (490)
Q Consensus 367 l~~l~~~l~~l~~L~~L~ls~n~~~~~ 393 (490)
++.+|..+..+++|+.|++++|++.+.
T Consensus 273 L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 273 LTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCcCCHHHhhccccCEEEecCCCCCCc
Confidence 666666666666666666666665443
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=7.3e-26 Score=228.68 Aligned_cols=243 Identities=18% Similarity=0.220 Sum_probs=166.8
Q ss_pred CccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccC
Q 011233 48 NLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRH 126 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 126 (490)
..+.+++++.+++.+|..+. +++++|++++|.+.+..+ .|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46788999999999987665 689999999998777665 788999999999999988888788899999999999999
Q ss_pred CCCCCcCCc-ccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCC-ccccccccCcEEEeccCCCcccccc
Q 011233 127 CESLGSLPT-SIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELP-SSIECLSKLDRLSIQDCTRLENISS 203 (490)
Q Consensus 127 n~~~~~~p~-~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~~~ 203 (490)
|.+. .+|. .+. +++|++|++++|.+.. +| ..+..+++|++|++++|+..+.++.
T Consensus 122 n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~----------------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIES----------------------IPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp SCCS-SCCTTTSCSCSSCCEEECCSCCCCE----------------------ECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred CcCC-eeCHhHhhccccCceeeCCCCcccc----------------------cCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 8744 4444 444 7778888887775432 22 2455667777777777655555543
Q ss_pred -cccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhh
Q 011233 204 -SIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQ 282 (490)
Q Consensus 204 -~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 282 (490)
.|.++++|++|++++ |.+ ..+| .+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..
T Consensus 179 ~~~~~l~~L~~L~L~~-n~l---~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 179 GAFEGLSNLRYLNLAM-CNL---REIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp TTTTTCSSCCEEECTT-SCC---SSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred chhhcccccCeecCCC-CcC---cccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 466777777777777 666 3344 2555666666666666666555666666666666666666666655555566
Q ss_pred ccccccccccccccccccCccccCccccceeecccccc
Q 011233 283 LALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKN 320 (490)
Q Consensus 283 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~ 320 (490)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 66666666666555554444555555566666655553
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.1e-28 Score=259.12 Aligned_cols=382 Identities=12% Similarity=0.045 Sum_probs=267.5
Q ss_pred CCcceEEEecCCcCccccccCCCC-C-C-Cccceeeeccccc-cc--c---ccCCCCccEEEcCCCCccc-----ccccc
Q 011233 1 MTELRTLKFYGSENKCMVSSLEGV-P-L-TEVRYFEWHQFPL-ET--L---NINGENLVSLKMPGRKVKQ-----LWNDV 66 (490)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~-~-~-~~L~~L~l~~~~l-~~--l---~~~~~~L~~L~Ls~n~i~~-----l~~~~ 66 (490)
+++|++|+++++. .....+..+ . . .+|++|++++|.. .. + ...+++|++|+|++|.+++ ++...
T Consensus 111 ~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMI--VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCB--CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCCeEEeeccE--ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 4689999999842 111112222 1 2 3599999999872 21 1 4578999999999998764 33455
Q ss_pred cCCCCCCEEecCCCCCCCC----CC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCC---CcCCcccc
Q 011233 67 RNLVNLKYIDLSHSESLTK----LP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESL---GSLPTSIH 138 (490)
Q Consensus 67 ~~l~~L~~L~Ls~n~~~~~----~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~---~~~p~~~~ 138 (490)
..+++|++|++++|.+.+. ++ .+..+++|++|++++|.+.+ +|..+.++++|++|+++++... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 7789999999999987632 22 34688999999999987655 6788999999999999864322 12223333
Q ss_pred -cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCC-----ccccccccCcEEEeccCCCcccccccccCCCCCC
Q 011233 139 -SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELP-----SSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQ 212 (490)
Q Consensus 139 -l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp-----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 212 (490)
+++|+.++++++ ....+|..+..+. .|+.++.....+. ..+..+++|++|+++++...+.++.....+++|+
T Consensus 268 ~~~~L~~L~l~~~-~~~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYM-GPNEMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTC-CTTTGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCcccc-chhHHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 778888888774 3344454444333 5554442222221 3357899999999995433333444456789999
Q ss_pred EEeccc----------CCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccC-ccccceeEcc----Ccccccc--
Q 011233 213 YIEIKR----------CSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGN-SKALEELRVE----GAAIRER-- 275 (490)
Q Consensus 213 ~L~L~~----------~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~ls----~n~l~~~-- 275 (490)
+|++++ |+.++. ..++.....+++|++|+++.+.+.+..+..+.. +++|++|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 999995 777752 123333456899999999888887766666665 8899999996 6777762
Q ss_pred ---chhhHhhccccccccccccc--cccccCccc-cCccccceeecccccccc-cCCcccCCccccceeeccCccccc--
Q 011233 276 ---LPESLGQLALLCELKMIKCS--SFESLPSSL-CMLKYLTSLAIIDCKNFK-RLPNELGNLKCLVVLIVKGTAIRE-- 346 (490)
Q Consensus 276 ---~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~-~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~-- 346 (490)
++..+.++++|++|+++.|. +.+..+..+ ..+++|++|++++|++.+ .++..+.++++|++|++++|.+++
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 504 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence 45557789999999997654 444433333 347899999999999776 345556888999999999999876
Q ss_pred CCccccCCCCCCEEeCcCCCCCCC--chhhhccCCCCEEecCCC
Q 011233 347 VPESLGQLSSIVRLDLSNNNLERT--PASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 347 ~p~~~~~l~~L~~L~Ls~n~l~~l--~~~l~~l~~L~~L~ls~n 388 (490)
++..+..+++|++|++++|+++.. ..-...++.+....+..+
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 555667899999999999998843 323345677766655554
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.2e-27 Score=228.67 Aligned_cols=252 Identities=19% Similarity=0.158 Sum_probs=159.9
Q ss_pred ccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCC-cccchhhh-------ccccCcEEEccCCCCCCcCCcc
Q 011233 66 VRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSL-TETHSSIQ-------YLNKLEVLDLRHCESLGSLPTS 136 (490)
Q Consensus 66 ~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~-~~~~~~l~-------~l~~L~~L~Ls~n~~~~~~p~~ 136 (490)
++..++|++|++++|.+ .+| .+... |++|++++|.+. ..+|..+. ++++|++|++++|.+.+.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34556677777777776 445 34433 677777776663 34555444 5677777777777666666665
Q ss_pred c--c-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCE
Q 011233 137 I--H-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQY 213 (490)
Q Consensus 137 ~--~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 213 (490)
+ . +++|++|++++|.+.+. |..+..+. . ..+++|++|++++|.+.+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~--------------~--~~~~~L~~L~L~~N~l~~~~~----------- 166 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQ--------------Q--WLKPGLKVLSIAQAHSLNFSC----------- 166 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHH--------------T--TCCTTCCEEEEESCSCCCCCT-----------
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHH--------------H--hhcCCCcEEEeeCCCCccchH-----------
Confidence 4 3 56666666666544333 22111110 0 001445555555544444333
Q ss_pred EecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCc--cCccc--cCccccceeEccCccccc--cch-hhHhhcccc
Q 011233 214 IEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLER--LPDEL--GNSKALEELRVEGAAIRE--RLP-ESLGQLALL 286 (490)
Q Consensus 214 L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~--~p~~~--~~l~~L~~L~ls~n~l~~--~~~-~~~~~l~~L 286 (490)
..++.+++|++|++++|.+.+. +|..+ ..+++|++|++++|++++ .++ ..+..+++|
T Consensus 167 ----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 167 ----------------EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp ----------------TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred ----------------HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 4444555555555555554433 22223 567777778887777773 122 234567888
Q ss_pred ccccccccccccccC-ccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCC
Q 011233 287 CELKMIKCSSFESLP-SSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNN 365 (490)
Q Consensus 287 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n 365 (490)
++|++++|.+.+..| ..+..+++|++|++++|++. .+|..+. ++|++|++++|+++++|. +..+++|++|++++|
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 888888888777664 44566789999999999876 6777666 899999999999999977 889999999999999
Q ss_pred CCCC
Q 011233 366 NLER 369 (490)
Q Consensus 366 ~l~~ 369 (490)
.++.
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9874
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.7e-25 Score=224.29 Aligned_cols=244 Identities=18% Similarity=0.178 Sum_probs=183.1
Q ss_pred ccceeeecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCC
Q 011233 28 EVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCS 104 (490)
Q Consensus 28 ~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~ 104 (490)
..+.++.++..++.+ ..-.+++++|+|++|.++.++ ..|.++++|++|++++|.+.+..+ .|..+++|++|++++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456677777777777 334568888888888888764 678888888888888888776665 77888888888888888
Q ss_pred CCcccchhhhccccCcEEEccCCCCCCcCCc-ccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccc
Q 011233 105 SLTETHSSIQYLNKLEVLDLRHCESLGSLPT-SIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIE 182 (490)
Q Consensus 105 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~ 182 (490)
+....+..+.++++|++|++++|.+. .+|. .+. +++|++|++++|+..+.++. ..+.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------------~~~~ 193 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE--------------------GAFE 193 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECT--------------------TTTT
T ss_pred CCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccCh--------------------hhcc
Confidence 77766677888888888888888744 4444 444 88888888888654443221 2456
Q ss_pred ccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccc
Q 011233 183 CLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKAL 262 (490)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 262 (490)
.+++|++|++++|.+.+. | .+..+++|++|++++ |.++ +..|..+..+++|+.|++++|.+.+..|..+..+++|
T Consensus 194 ~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~-N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSG-NHFP--EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTT-SCCS--EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCccccc-c-cccccccccEEECcC-CcCc--ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 777888888888776643 3 377788888888888 7775 4456677888888888888888877777778888888
Q ss_pred ceeEccCccccccchhhHhhccccccccccccccc
Q 011233 263 EELRVEGAAIRERLPESLGQLALLCELKMIKCSSF 297 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 297 (490)
++|++++|++++..+..+..+++|++|++++|...
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88888888888755666777888888888887654
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=220.06 Aligned_cols=245 Identities=18% Similarity=0.159 Sum_probs=169.7
Q ss_pred ccceeeecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCC
Q 011233 28 EVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCS 104 (490)
Q Consensus 28 ~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~ 104 (490)
..+.++..+..++.+ ..-.+++++|+|++|.++.++ ..|.++++|++|++++|.+.+..+ .|..+++|++|++++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 455666666677766 333467778888888877765 667777888888888777665544 67777788888888877
Q ss_pred CCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccc
Q 011233 105 SLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIEC 183 (490)
Q Consensus 105 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~ 183 (490)
+....+..|..+++|++|++++|.+.+..+..+. +++|++|++++|+..+.++. ..|..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--------------------~~~~~ 183 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--------------------GAFEG 183 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT--------------------TTTTT
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc--------------------chhhc
Confidence 7666666777778888888877774433333444 77788888877654333221 24556
Q ss_pred cccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccc
Q 011233 184 LSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALE 263 (490)
Q Consensus 184 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 263 (490)
+++|++|++++|.+. .+| .+..+++|++|++++ |.++ +..|..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 184 l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~-N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG-NHLS--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT-SCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC-CccC--ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 777777777777665 334 367777777888877 6665 44466677777788888877777777777777777788
Q ss_pred eeEccCccccccchhhHhhccccccccccccccc
Q 011233 264 ELRVEGAAIRERLPESLGQLALLCELKMIKCSSF 297 (490)
Q Consensus 264 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 297 (490)
+|++++|++++..+..+..+++|+.|++++|...
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 8888888777755566777777888887777653
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.4e-27 Score=225.44 Aligned_cols=255 Identities=14% Similarity=0.060 Sum_probs=125.2
Q ss_pred cEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCC
Q 011233 50 VSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHC 127 (490)
Q Consensus 50 ~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 127 (490)
+..+++.+.+...+ ..+..+++|++|++++|.+.+..| .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 33344444444332 222334445555555554444333 44455555555555544443332 444555555555554
Q ss_pred CCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccC
Q 011233 128 ESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFK 207 (490)
Q Consensus 128 ~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 207 (490)
.+. .++. .++|++|++++|.+.+.. ...+++|++|++++|.+.+..+..+..
T Consensus 91 ~l~-~l~~---~~~L~~L~l~~n~l~~~~------------------------~~~~~~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 91 YVQ-ELLV---GPSIETLHAANNNISRVS------------------------CSRGQGKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp EEE-EEEE---CTTCCEEECCSSCCSEEE------------------------ECCCSSCEEEECCSSCCCSGGGBCTGG
T ss_pred ccc-cccC---CCCcCEEECCCCccCCcC------------------------ccccCCCCEEECCCCCCCCccchhhhc
Confidence 421 1111 244555555554332210 012344555555555555544444555
Q ss_pred CCCCCEEecccCCCCCCCCCCCccc-ccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccc
Q 011233 208 LKSLQYIEIKRCSNLKSLESLPNNL-CMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALL 286 (490)
Q Consensus 208 l~~L~~L~L~~~n~l~~~~~l~~~~-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 286 (490)
+++|++|++++ |.++ +..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|++++ +|..+..+++|
T Consensus 143 l~~L~~L~Ls~-N~l~--~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 216 (317)
T 3o53_A 143 RSRVQYLDLKL-NEID--TVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216 (317)
T ss_dssp GSSEEEEECTT-SCCC--EEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred cCCCCEEECCC-CCCC--cccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcc
Confidence 55555555555 4443 2222222 2455555555555544433 21 2235666666666666665 44446666666
Q ss_pred ccccccccccccccCccccCccccceeeccccccc-ccCCcccCCccccceeeccC
Q 011233 287 CELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNF-KRLPNELGNLKCLVVLIVKG 341 (490)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~ 341 (490)
++|++++|.+. .+|..+..+++|+.|++++|++. +.++.++..+++|+.+++++
T Consensus 217 ~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp SEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 66666665544 34555556666666666666655 44555556666666666664
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.9e-25 Score=227.77 Aligned_cols=263 Identities=24% Similarity=0.213 Sum_probs=180.5
Q ss_pred Cccceeeecccccccc-ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCC
Q 011233 27 TEVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSS 105 (490)
Q Consensus 27 ~~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~ 105 (490)
.++++|++++|.++.+ ..-.++|++|++++|.++.+|. .+++|++|++++|.+.+ +|. .+++|++|++++|.+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSNPL 113 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC--CCTTCCEEEECSCCC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC--CCCCCCEEECcCCcC
Confidence 3578888888888877 2233788888888888888776 56788888888887543 444 678888888888876
Q ss_pred CcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccc
Q 011233 106 LTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLS 185 (490)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~ 185 (490)
.+. |. .+++|++|++++|. ...+|.. +++|++|++++|.+.+ +|. .++
T Consensus 114 ~~l-~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N~l~~----------------------l~~---~~~ 161 (622)
T 3g06_A 114 THL-PA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDNQLAS----------------------LPA---LPS 161 (622)
T ss_dssp CCC-CC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSC----------------------CCC---CCT
T ss_pred CCC-CC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCCcCCC----------------------cCC---ccC
Confidence 553 33 56788888888887 4446653 4788888888875432 221 234
Q ss_pred cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccccee
Q 011233 186 KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEEL 265 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 265 (490)
+|+.|++++|.+.+ +| ..+++|+.|++++ |.++ .+|.. +++|+.|++++|.+. .+|.. +++|++|
T Consensus 162 ~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~-N~l~---~l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L 226 (622)
T 3g06_A 162 ELCKLWAYNNQLTS-LP---MLPSGLQELSVSD-NQLA---SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL 226 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCS-SCCS---CCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEE
T ss_pred CCCEEECCCCCCCC-Cc---ccCCCCcEEECCC-CCCC---CCCCc---cchhhEEECcCCccc-ccCCC---CCCCCEE
Confidence 67777777776654 44 3457777788877 6663 34432 367777777776554 34432 4677888
Q ss_pred EccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccc
Q 011233 266 RVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIR 345 (490)
Q Consensus 266 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (490)
++++|.+++ +| ..+++|++|++++|.+. .+|. .+++|+.|++++|++. .+|..+.++++|+.|++++|.++
T Consensus 227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 227 IVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred EccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence 888887776 55 34577888888877655 3444 4567888888888765 66777788888888888888877
Q ss_pred c-CCccc
Q 011233 346 E-VPESL 351 (490)
Q Consensus 346 ~-~p~~~ 351 (490)
+ .|..+
T Consensus 298 ~~~~~~l 304 (622)
T 3g06_A 298 ERTLQAL 304 (622)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 6 44433
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=9.3e-27 Score=224.74 Aligned_cols=193 Identities=12% Similarity=0.063 Sum_probs=107.9
Q ss_pred cccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccc
Q 011233 182 ECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKA 261 (490)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 261 (490)
..+++|++|++++|.+.+. ...++|++|++++ |.++ .++. ..+++|++|++++|.+.+..+..+..+++
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~-n~l~---~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~ 145 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAAN-NNIS---RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSR 145 (317)
T ss_dssp TTCTTCCEEECCSSEEEEE-----EECTTCCEEECCS-SCCS---EEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSS
T ss_pred hhcCCCCEEECcCCccccc-----cCCCCcCEEECCC-CccC---CcCc--cccCCCCEEECCCCCCCCccchhhhccCC
Confidence 3444555555555544321 1225566666666 5553 1111 12455666666666655555555666666
Q ss_pred cceeEccCccccccchhhH-hhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeecc
Q 011233 262 LEELRVEGAAIRERLPESL-GQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVK 340 (490)
Q Consensus 262 L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 340 (490)
|++|++++|.+++..+..+ ..+++|++|++++|.+.+. +. ...+++|++|++++|++.+. |..+..+++|++|+++
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECT
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECc
Confidence 6666666666666444444 2456666666666655443 21 22356666666666665443 3336666666666666
Q ss_pred CcccccCCccccCCCCCCEEeCcCCCCC--CCchhhhccCCCCEEecCCC
Q 011233 341 GTAIREVPESLGQLSSIVRLDLSNNNLE--RTPASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 341 ~n~l~~~p~~~~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~ls~n 388 (490)
+|+++++|..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|
T Consensus 223 ~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 6666666666666666666666666666 34555556666666666544
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9e-27 Score=244.55 Aligned_cols=384 Identities=15% Similarity=0.093 Sum_probs=253.8
Q ss_pred CcceEEEecCCcCcccc-ccCCC-----------C--CCCccceeeecccccccc----c-cCCCCccEEEcCCC-Cccc
Q 011233 2 TELRTLKFYGSENKCMV-SSLEG-----------V--PLTEVRYFEWHQFPLETL----N-INGENLVSLKMPGR-KVKQ 61 (490)
Q Consensus 2 ~~L~~L~l~~~~~~~~~-~~~~~-----------~--~~~~L~~L~l~~~~l~~l----~-~~~~~L~~L~Ls~n-~i~~ 61 (490)
++|++|++++....... ..+.. + ..++|++|++++|.+++. + ..+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 57889999884311111 11111 1 467899999999987765 3 26899999999998 5654
Q ss_pred --ccccccCCCCCCEEecCCCCCCCCCC-Cc----ccCCCCcEEecCCCC--CCc-ccchhhhccccCcEEEccCCCCCC
Q 011233 62 --LWNDVRNLVNLKYIDLSHSESLTKLP-DL----SLARNLEILDLGSCS--SLT-ETHSSIQYLNKLEVLDLRHCESLG 131 (490)
Q Consensus 62 --l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~----~~l~~L~~L~L~~n~--~~~-~~~~~l~~l~~L~~L~Ls~n~~~~ 131 (490)
++....++++|++|++++|.+.+..+ .+ ..+++|++|++++|. +.. .++..+.++++|++|++++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 55556689999999999998554332 22 367799999999986 221 122334567999999999985455
Q ss_pred cCCcccc-cCCccEEeecCCCCCC------CCcccccchhhhhhhhh----ccCCcCCccccccccCcEEEeccCCCccc
Q 011233 132 SLPTSIH-SKYIEELDFVGCSKLK------NHPAISSSLIPLLSLIK----VGIKELPSSIECLSKLDRLSIQDCTRLEN 200 (490)
Q Consensus 132 ~~p~~~~-l~~L~~L~ls~n~~~~------~~~~~~~~~~~~L~~~~----~~~~~lp~~~~~l~~L~~L~L~~n~~~~~ 200 (490)
.+|..+. +++|++|+++++...- .++..+..+. .|+.+. .....++..+..+++|++|++++|.+.+.
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~-~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK-ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT-TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC-CcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 5666666 8999999987764210 0011111111 222221 11223444445788999999999885543
Q ss_pred c-cccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCC---------CCCCccCccc-cCccccceeEccC
Q 011233 201 I-SSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINC---------PKLERLPDEL-GNSKALEELRVEG 269 (490)
Q Consensus 201 ~-~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n---------~~~~~~p~~~-~~l~~L~~L~ls~ 269 (490)
. ...+..+++|++|++++| +.. ..++.....+++|++|++.++ .+.+.....+ ..+++|++|.++.
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~--~~~-~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY--IED-AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG--GHH-HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHhcCCCcCEEeCcCc--cCH-HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 2 233568899999999984 321 223333446889999999442 2222222222 3478999998888
Q ss_pred ccccccchhhHh-hcccccccccc-----ccccccc------cCccccCccccceeecccccccccCCcccCC-ccccce
Q 011233 270 AAIRERLPESLG-QLALLCELKMI-----KCSSFES------LPSSLCMLKYLTSLAIIDCKNFKRLPNELGN-LKCLVV 336 (490)
Q Consensus 270 n~l~~~~~~~~~-~l~~L~~L~l~-----~n~~~~~------~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~-l~~L~~ 336 (490)
+.+++..+..+. .+++|+.|+++ +|+..+. ++..+..+++|+.|++++ .+.+..+..++. +++|+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 888875555554 58899999998 3333332 222356778999999977 455544444544 788999
Q ss_pred eeccCccccc--CCccccCCCCCCEEeCcCCCCCC--CchhhhccCCCCEEecCCCCC
Q 011233 337 LIVKGTAIRE--VPESLGQLSSIVRLDLSNNNLER--TPASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 337 L~L~~n~l~~--~p~~~~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~ls~n~~ 390 (490)
|++++|.+++ ++.....+++|++|++++|.++. +......+++|++|++++|++
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999876 33333668999999999999963 233445689999999999986
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.6e-25 Score=225.96 Aligned_cols=149 Identities=8% Similarity=-0.014 Sum_probs=81.1
Q ss_pred ccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccc-cCCCCcEEEccCCCCCCccCccccCccccc
Q 011233 185 SKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLC-MFKSLASLEIINCPKLERLPDELGNSKALE 263 (490)
Q Consensus 185 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 263 (490)
++|+.|++++|.+.+..|..++.+++|++|++++ |.++ +..|..+. .+++|++|++++|.+.+..+ ...+++|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~--~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 194 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEID--TVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLK 194 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCC--EEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCC--CcChHHHhhhCCcccEEecCCCccccccc--cccCCCCC
Confidence 4455555555555555554555555555555555 4443 22333333 45555555555555444311 22356666
Q ss_pred eeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeeccccccc-ccCCcccCCccccceeecc
Q 011233 264 ELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNF-KRLPNELGNLKCLVVLIVK 340 (490)
Q Consensus 264 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~ 340 (490)
+|++++|.+++ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.++..++.|+.++++
T Consensus 195 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666666665 44445666666666666655543 4555555666666666666655 3455555556666666554
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2e-24 Score=204.21 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=189.1
Q ss_pred cCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCcc
Q 011233 173 GIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERL 252 (490)
Q Consensus 173 ~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~ 252 (490)
.+..+|..+. +++++|++++|.+.+..+..+.++++|++|++++ |.++ +..+..+..+++|++|++++|.+.+..
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCC--EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCC-CcCC--ccCHHHccCCcCCCEEECCCCccCccC
Confidence 3455665443 5799999999998887777899999999999999 7885 334457889999999999999988888
Q ss_pred CccccCccccceeEccCccccccchhhHhhccccccccccccccccc-cCccccCccccceeecccccccccCCcccCCc
Q 011233 253 PDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFES-LPSSLCMLKYLTSLAIIDCKNFKRLPNELGNL 331 (490)
Q Consensus 253 p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l 331 (490)
+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++.+..+..+..+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 88899999999999999999986666799999999999999988774 68889999999999999999888877788877
Q ss_pred cccc----eeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchh-hhccCCCCEEecCCCCCccccccc
Q 011233 332 KCLV----VLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPAS-LYQLSSIKYLKLFDNNFKHRLLTL 397 (490)
Q Consensus 332 ~~L~----~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~ls~n~~~~~l~~l 397 (490)
++|+ .|++++|.+++++.......+|++|++++|+++.+|.. +..+++|++|++++|++.+..+.+
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred hhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 7777 89999999999876665667999999999999998654 578999999999999998766543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.7e-25 Score=224.47 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=114.9
Q ss_pred ccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccc
Q 011233 183 CLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKAL 262 (490)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L 262 (490)
.+++|++|++++|.+.+.. ..++|++|++++ |.++ .++. ..+++|+.|++++|.+.+..|..++.+++|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~-N~l~---~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 146 (487)
T 3oja_A 78 SLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN-NNIS---RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRV 146 (487)
T ss_dssp TCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS-SCCC---CEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSE
T ss_pred cCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC-CcCC---CCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCC
Confidence 3445555555554433221 125566666666 5553 2221 134566666666666666666666666777
Q ss_pred ceeEccCccccccchhhHh-hccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccC
Q 011233 263 EELRVEGAAIRERLPESLG-QLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKG 341 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (490)
++|++++|.+++..|..+. .+++|++|++++|.+.+..+ ...+++|+.|++++|.+.+..| .+..+++|+.|++++
T Consensus 147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRN 223 (487)
T ss_dssp EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTT
T ss_pred CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecC
Confidence 7777777777665555554 56677777777766655422 2346677777777776555333 366667777777777
Q ss_pred cccccCCccccCCCCCCEEeCcCCCCC--CCchhhhccCCCCEEecC
Q 011233 342 TAIREVPESLGQLSSIVRLDLSNNNLE--RTPASLYQLSSIKYLKLF 386 (490)
Q Consensus 342 n~l~~~p~~~~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~ls 386 (490)
|.++++|..+..+++|+.|++++|.+. .+|..+..++.|+.++++
T Consensus 224 N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777777766667777777777777776 456666666666666664
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=6.4e-26 Score=238.07 Aligned_cols=362 Identities=14% Similarity=0.101 Sum_probs=246.5
Q ss_pred CCcceEEEecCCcCccccccCCCC--CCCccceeeeccc-cccc--c---ccCCCCccEEEcCCCCccc-----cccccc
Q 011233 1 MTELRTLKFYGSENKCMVSSLEGV--PLTEVRYFEWHQF-PLET--L---NINGENLVSLKMPGRKVKQ-----LWNDVR 67 (490)
Q Consensus 1 l~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~-~l~~--l---~~~~~~L~~L~Ls~n~i~~-----l~~~~~ 67 (490)
+++|++|++++.. .....+..+ .+++|++|++++| .++. + ...+++|++|++++|.+++ ++....
T Consensus 104 ~~~L~~L~L~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMV--VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCB--CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcE--EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3589999999843 112222233 4689999999998 4544 2 4579999999999998765 333345
Q ss_pred CCCCCCEEecCCCCCCCCCC--C----cccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCC------------
Q 011233 68 NLVNLKYIDLSHSESLTKLP--D----LSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCES------------ 129 (490)
Q Consensus 68 ~l~~L~~L~Ls~n~~~~~~~--~----~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~------------ 129 (490)
.+++|++|++++|. +.++ . +..+++|++|++++|...+.++..+.++++|++|+++++..
T Consensus 182 ~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 78899999999987 2232 2 24579999999999865556788888899999998765531
Q ss_pred ------------------CCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEE
Q 011233 130 ------------------LGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRL 190 (490)
Q Consensus 130 ------------------~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L 190 (490)
.+.++.... +++|++|++++|.+... .++..+..+++|++|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~--------------------~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY--------------------DLVKLLCQCPKLQRL 319 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH--------------------HHHHHHTTCTTCCEE
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH--------------------HHHHHHhcCCCcCEE
Confidence 001122211 56666666666642211 011234578899999
Q ss_pred EeccCCCcc-cccccccCCCCCCEEeccc--------CCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcccc-Ccc
Q 011233 191 SIQDCTRLE-NISSSIFKLKSLQYIEIKR--------CSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELG-NSK 260 (490)
Q Consensus 191 ~L~~n~~~~-~~~~~~~~l~~L~~L~L~~--------~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~ 260 (490)
++++| +.. .++.....+++|++|++.. |+.++. ..+......+++|++|.+..+.+.+..+..+. .++
T Consensus 320 ~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~-~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~ 397 (594)
T 2p1m_B 320 WVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE-QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRP 397 (594)
T ss_dssp EEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH-HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT
T ss_pred eCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH-HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC
Confidence 99998 332 2233334689999999943 344431 11111223589999998888777665555554 589
Q ss_pred ccceeEcc--C----ccccc-----cchhhHhhccccccccccccccccccCccccC-ccccceeecccccccccCCccc
Q 011233 261 ALEELRVE--G----AAIRE-----RLPESLGQLALLCELKMIKCSSFESLPSSLCM-LKYLTSLAIIDCKNFKRLPNEL 328 (490)
Q Consensus 261 ~L~~L~ls--~----n~l~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~~~~~ 328 (490)
+|++|+++ + +.+++ .++..+..+++|+.|++++ .+....+..+.. +++|+.|++++|.+.+..+..+
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence 99999999 4 55653 2334477889999999977 555544444443 7899999999999766544444
Q ss_pred -CCccccceeeccCccccc--CCccccCCCCCCEEeCcCCCCCCC-chhh-hccCCCCEEecCCCC
Q 011233 329 -GNLKCLVVLIVKGTAIRE--VPESLGQLSSIVRLDLSNNNLERT-PASL-YQLSSIKYLKLFDNN 389 (490)
Q Consensus 329 -~~l~~L~~L~L~~n~l~~--~p~~~~~l~~L~~L~Ls~n~l~~l-~~~l-~~l~~L~~L~ls~n~ 389 (490)
.++++|+.|++++|.+++ +...+..+++|++|++++|.++.- ...+ ..+++|+...+..+.
T Consensus 477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 668999999999999966 334566789999999999998521 2233 457888776666554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=8.8e-23 Score=192.85 Aligned_cols=218 Identities=12% Similarity=0.064 Sum_probs=137.4
Q ss_pred eecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCccc
Q 011233 33 EWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTET 109 (490)
Q Consensus 33 ~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~ 109 (490)
+..+..+..+ ..-.+++++|++++|.+++++ ..+.++++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 3334444444 222346777777777777765 367777777777777777655544 5777777777777777777666
Q ss_pred chhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCc
Q 011233 110 HSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLD 188 (490)
Q Consensus 110 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~ 188 (490)
+..+.++++|++|++++|.+.+..+..+. +++|++|++++|.+.+. .+|..+..+++|+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~l~~~~~~l~~L~ 152 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------------------KLPEYFSNLTNLE 152 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------------CCCGGGGGCTTCC
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee--------------------cCchhhccCCCCC
Confidence 67777777777777777764444333444 67777777777654321 1345566667777
Q ss_pred EEEeccCCCcccccccccCCCCCC----EEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccce
Q 011233 189 RLSIQDCTRLENISSSIFKLKSLQ----YIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEE 264 (490)
Q Consensus 189 ~L~L~~n~~~~~~~~~~~~l~~L~----~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 264 (490)
+|++++|.+.+..+..+..+++|+ +|++++ |.+ ..++.......+|++|++++|.+.+..+..+..+++|++
T Consensus 153 ~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPM---NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp EEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS-SCC---CEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred EEECCCCCCCcCCHHHhhhhhhccccceeeecCC-Ccc---cccCccccCCCcccEEECCCCceeecCHhHhcccccccE
Confidence 777777766665555555555554 667776 666 333333333446777777776655544445566667777
Q ss_pred eEccCccccc
Q 011233 265 LRVEGAAIRE 274 (490)
Q Consensus 265 L~ls~n~l~~ 274 (490)
|++++|.+.+
T Consensus 229 L~l~~N~~~c 238 (276)
T 2z62_A 229 IWLHTNPWDC 238 (276)
T ss_dssp EECCSSCBCC
T ss_pred EEccCCcccc
Confidence 7777776665
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=9.2e-24 Score=199.11 Aligned_cols=226 Identities=16% Similarity=0.161 Sum_probs=172.9
Q ss_pred cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccccee
Q 011233 186 KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEEL 265 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 265 (490)
.+..+++..+...... ....+++|+.|++++ +.++ .++ .+..+++|++|++++|.+.+ + ..+..+++|++|
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~-~~i~---~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANN-SDIK---SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTT-SCCC---CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEE
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCC-CCcc---ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEE
Confidence 3444555554443332 245667788888887 5663 333 36678888888888877665 2 357788888888
Q ss_pred EccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccc
Q 011233 266 RVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIR 345 (490)
Q Consensus 266 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (490)
++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..++.+++|++|++++|+++
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 88888888866667788888999999888888777777888899999999999888777777889999999999999999
Q ss_pred cCC-ccccCCCCCCEEeCcCCCCCCCc-hhhhccCCCCEEecCCCCCccccccccccccCCcccchhhhhhhhcccccee
Q 011233 346 EVP-ESLGQLSSIVRLDLSNNNLERTP-ASLYQLSSIKYLKLFDNNFKHRLLTLSVDLNLVPNVLSEIINDRWRKLSFHV 423 (490)
Q Consensus 346 ~~p-~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~ls~n~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~ 423 (490)
++| ..++.+++|++|++++|+++.++ ..+..+++|++|++++|++.+..+
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~---------------------------- 222 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP---------------------------- 222 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT----------------------------
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc----------------------------
Confidence 966 55788999999999999999875 457889999999999998754432
Q ss_pred eecCeeeeccchhhhcccccceeeeEeccccccccccc
Q 011233 424 KVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRMTG 461 (490)
Q Consensus 424 ~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~~~ 461 (490)
.+++++++.|+++|.+|.+++....
T Consensus 223 -------------~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 223 -------------GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -------------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -------------HHHHHHHHHHhCCCcccCcccccCC
Confidence 2345677788888888888766544
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4.7e-23 Score=198.16 Aligned_cols=203 Identities=16% Similarity=0.121 Sum_probs=168.8
Q ss_pred ccccCcEEEeccCCCcccccccc--cCCCCCCEEecccCCCCCCCCCCC----cccccCCCCcEEEccCCCCCCccCccc
Q 011233 183 CLSKLDRLSIQDCTRLENISSSI--FKLKSLQYIEIKRCSNLKSLESLP----NNLCMFKSLASLEIINCPKLERLPDEL 256 (490)
Q Consensus 183 ~l~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~~n~l~~~~~l~----~~~~~l~~L~~L~l~~n~~~~~~p~~~ 256 (490)
.+++|++|++++|.+.+..|..+ ..+++|++|++++ |.++ +..+ ..+..+++|++|++++|.+.+..|..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRN-VSWA--TGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEES-CCCS--STTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeec-cccc--chhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 34679999999999998888877 8899999999999 7876 3333 234578999999999999988888889
Q ss_pred cCccccceeEccCcccccc--ch--hhHhhccccccccccccccccc--cCc-cccCccccceeecccccccccCCcccC
Q 011233 257 GNSKALEELRVEGAAIRER--LP--ESLGQLALLCELKMIKCSSFES--LPS-SLCMLKYLTSLAIIDCKNFKRLPNELG 329 (490)
Q Consensus 257 ~~l~~L~~L~ls~n~l~~~--~~--~~~~~l~~L~~L~l~~n~~~~~--~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 329 (490)
+.+++|++|++++|++.+. ++ ..+..+++|++|++++|.+... .+. .+..+++|++|++++|++.+..|..+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 9999999999999997652 22 2346789999999999887532 222 246779999999999998888787777
Q ss_pred Cc---cccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCc
Q 011233 330 NL---KCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 330 ~l---~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
.+ ++|++|++++|+++.+|..+. ++|++|++++|+++++|. +..+++|++|++++|++.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 76 699999999999999997764 899999999999999875 788999999999999875
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.8e-23 Score=195.23 Aligned_cols=206 Identities=16% Similarity=0.107 Sum_probs=179.2
Q ss_pred cccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCc
Q 011233 180 SIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNS 259 (490)
Q Consensus 180 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 259 (490)
.+.++++++.++++++.+. .+|..+. ++++.|++++ |.++ +..+..+..+++|++|++++|.+.+..+ ...+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~-N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSE-NLLY--TFSLATLMPYTRLTQLNLDRAELTKLQV--DGTL 76 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTT-SCCS--EEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCC-CcCC--ccCHHHhhcCCCCCEEECCCCccCcccC--CCCC
Confidence 3567889999999997765 4565443 6899999999 8885 4456778899999999999988765433 2778
Q ss_pred cccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeec
Q 011233 260 KALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIV 339 (490)
Q Consensus 260 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 339 (490)
++|++|++++|+++. +|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 999999999999986 8888899999999999999988877788999999999999999988877888899999999999
Q ss_pred cCcccccCC-ccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCcccc
Q 011233 340 KGTAIREVP-ESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKHRL 394 (490)
Q Consensus 340 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~~l 394 (490)
++|+++++| ..+..+++|++|++++|+++.+|..+...++|+.+++++|++....
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 999999987 4568899999999999999999999999999999999999986554
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4e-23 Score=194.69 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=114.5
Q ss_pred ccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCC
Q 011233 28 EVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSS 105 (490)
Q Consensus 28 ~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~ 105 (490)
++..+++..+.+.++ ...+++|++|++++|.++.++ .+..+++|++|++++|.+.+ ++.+..+++|++|++++|.+
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCcc
Confidence 444445555555444 445566666666666665553 35556666666666665433 34555556666666666555
Q ss_pred CcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccc
Q 011233 106 LTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLS 185 (490)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~ 185 (490)
.+..+..++++++|++|++++|.+.+..+.. +..++
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------------------------~~~l~ 133 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGV--------------------------------------------FDKLT 133 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTT--------------------------------------------TTTCT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHH--------------------------------------------hccCC
Confidence 5544455555555555555555433222222 33444
Q ss_pred cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccccee
Q 011233 186 KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEEL 265 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 265 (490)
+|++|++++|.+.+..+..+..+++|++|++++ |.++ +..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQ--SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcC--ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 455555555544443333445555555555555 4443 2222334445555555555555554444445555555555
Q ss_pred EccCccccccchhhHhhccccccccccccccccccCccccCc
Q 011233 266 RVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCML 307 (490)
Q Consensus 266 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 307 (490)
++++|.+.+ .+++|+.++++.|.+.|.+|..++.+
T Consensus 211 ~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 211 WLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp ECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred EccCCCccc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 555555543 23345555555555555555544443
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.3e-22 Score=189.33 Aligned_cols=204 Identities=19% Similarity=0.204 Sum_probs=174.0
Q ss_pred ccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccce
Q 011233 185 SKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEE 264 (490)
Q Consensus 185 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 264 (490)
.+.+.++++++.+. .+|..+. +++++|++++ +.++ +..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~-n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQS-NKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCS-SCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcC-CCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 35788999987766 4665443 6799999999 7885 333457888999999999998887666666788999999
Q ss_pred eEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccc
Q 011233 265 LRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAI 344 (490)
Q Consensus 265 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (490)
|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|++++|++
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 99999999986666788999999999999998888888889999999999999998877777789999999999999999
Q ss_pred ccCC-ccccCCCCCCEEeCcCCCCCCCch-hhhccCCCCEEecCCCCCcccc
Q 011233 345 REVP-ESLGQLSSIVRLDLSNNNLERTPA-SLYQLSSIKYLKLFDNNFKHRL 394 (490)
Q Consensus 345 ~~~p-~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ls~n~~~~~l 394 (490)
+++| ..|..+++|++|++++|+++.+|. .+..+++|+.|++++|++....
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 9977 568899999999999999998864 5778999999999999986554
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=7.2e-22 Score=185.92 Aligned_cols=213 Identities=15% Similarity=0.088 Sum_probs=151.5
Q ss_pred ccccccc-ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhh
Q 011233 36 QFPLETL-NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSI 113 (490)
Q Consensus 36 ~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l 113 (490)
.|.|.+. +....+.+++++++++++.+|..+. +++++|++++|.+.+..+ .|..+++|++|++++|.+....+..|
T Consensus 4 ~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81 (270)
T ss_dssp CBGGGTCSBEEETTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCCCCCCCCEeCCCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh
Confidence 3556555 3333567888999888888886554 578889998888766555 68888888999998888776666667
Q ss_pred hccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEe
Q 011233 114 QYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSI 192 (490)
Q Consensus 114 ~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L 192 (490)
.++++|++|++++|.+.+..+..+. +++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------~~~~~~l~~L~~L~L 140 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP---------------------PRVFDSLTKLTYLSL 140 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC---------------------TTTTTTCTTCCEEEC
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC---------------------HHHhCcCcCCCEEEC
Confidence 8888888888888874433333334 778888888877544321 123556777888888
Q ss_pred ccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccc
Q 011233 193 QDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAI 272 (490)
Q Consensus 193 ~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l 272 (490)
++|.+.+..+..+..+++|++|++++ |.++ +..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 141 s~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 141 GYNELQSLPKGVFDKLTSLKELRLYN-NQLK--RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCS--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCCccCHhHccCCcccceeEecC-CcCc--EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 88777665555577788888888887 6664 22334566777888888888777665555677777888888888877
Q ss_pred cc
Q 011233 273 RE 274 (490)
Q Consensus 273 ~~ 274 (490)
..
T Consensus 218 ~c 219 (270)
T 2o6q_A 218 DC 219 (270)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.1e-24 Score=208.81 Aligned_cols=267 Identities=16% Similarity=0.170 Sum_probs=173.1
Q ss_pred cccccccccCCCCccEEEcCCCCcccccccccCC--CCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcc-cchh
Q 011233 36 QFPLETLNINGENLVSLKMPGRKVKQLWNDVRNL--VNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTE-THSS 112 (490)
Q Consensus 36 ~~~l~~l~~~~~~L~~L~Ls~n~i~~l~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~ 112 (490)
+..|..+......+++++++++.+. +..+..+ +++++|++++|.+.+..+.+..+++|++|++++|.+.+. ++..
T Consensus 36 c~~W~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~ 113 (336)
T 2ast_B 36 CKRWYRLASDESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 113 (336)
T ss_dssp CHHHHHHHTCSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred HHHHHHHhcCchhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence 3345555444566899999998876 4455555 799999999999888777778899999999999987765 7788
Q ss_pred hhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCC-CCCCCcccccchhhhhhhhhccCCcCCccccccccCcEE
Q 011233 113 IQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCS-KLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRL 190 (490)
Q Consensus 113 l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~-~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L 190 (490)
+..+++|++|++++|.+.+..+..+. +++|++|++++|. +.+. .++..+..+++|++|
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~--------------------~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--------------------ALQTLLSSCSRLDEL 173 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH--------------------HHHHHHHHCTTCCEE
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH--------------------HHHHHHhcCCCCCEE
Confidence 88999999999999986666666666 7888888888873 2210 122335566778888
Q ss_pred EeccC-CCccc-ccccccCCC-CCCEEecccCC-CCCCCCCCCcccccCCCCcEEEccCCC-CCCccCccccCcccccee
Q 011233 191 SIQDC-TRLEN-ISSSIFKLK-SLQYIEIKRCS-NLKSLESLPNNLCMFKSLASLEIINCP-KLERLPDELGNSKALEEL 265 (490)
Q Consensus 191 ~L~~n-~~~~~-~~~~~~~l~-~L~~L~L~~~n-~l~~~~~l~~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L 265 (490)
++++| .+.+. ++..+..++ +|++|++++|. .+++ +.++..+..+++|++|++++|. +.+..+..+..+++|++|
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 88877 65543 455566777 77777777732 3321 2344555667777777777766 444555566666777777
Q ss_pred EccCcc-ccccchhhHhhccccccccccccccccccCccccCc-cccceeecccccccccCCcccC
Q 011233 266 RVEGAA-IRERLPESLGQLALLCELKMIKCSSFESLPSSLCML-KYLTSLAIIDCKNFKRLPNELG 329 (490)
Q Consensus 266 ~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~ 329 (490)
++++|. +.......+..+++|++|++++| +. ...+..+ ..++.|++++|++.+..|..++
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 777664 22211224555666666666665 11 1112222 2355555555555555554443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.3e-22 Score=185.78 Aligned_cols=204 Identities=16% Similarity=0.154 Sum_probs=171.1
Q ss_pred CCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCC-CCCCCCCC-cccccCCCCcEEEccC-CCCCC
Q 011233 174 IKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSN-LKSLESLP-NNLCMFKSLASLEIIN-CPKLE 250 (490)
Q Consensus 174 ~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~-l~~~~~l~-~~~~~l~~L~~L~l~~-n~~~~ 250 (490)
++.+|. + .+++++|++++|.+.+..+..|.++++|++|++++ |. ++ .++ ..+..+++|++|++++ |.+.+
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~~l~---~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI-DVTLQ---QLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC-CSSCC---EECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCC-CCCcc---eeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 455666 3 24899999999998887777899999999999999 65 74 444 4788999999999998 77777
Q ss_pred ccCccccCccccceeEccCccccccchhhHhhccccc---ccccccc-ccccccCccccCccccc-eeecccccccccCC
Q 011233 251 RLPDELGNSKALEELRVEGAAIRERLPESLGQLALLC---ELKMIKC-SSFESLPSSLCMLKYLT-SLAIIDCKNFKRLP 325 (490)
Q Consensus 251 ~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~Ls~n~~~~~~~ 325 (490)
..+..|..+++|++|++++|++++ +|. +..+++|+ +|++++| .+.+..+..+.++++|+ .|++++|++....+
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred cCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 666788999999999999999998 776 88888888 9999999 66666666789999999 99999999774444
Q ss_pred cccCCccccceeeccCcc-cccCC-ccccCC-CCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCC
Q 011233 326 NELGNLKCLVVLIVKGTA-IREVP-ESLGQL-SSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 326 ~~~~~l~~L~~L~L~~n~-l~~~p-~~~~~l-~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~ 389 (490)
..+.. ++|+.|++++|+ ++++| ..|..+ ++|++|++++|+++.+|.. .+++|+.|+++++.
T Consensus 174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 44555 899999999995 99975 678889 9999999999999999865 78899999999874
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.3e-22 Score=187.28 Aligned_cols=200 Identities=16% Similarity=0.103 Sum_probs=173.7
Q ss_pred cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEeccc
Q 011233 139 SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKR 218 (490)
Q Consensus 139 l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 218 (490)
++++++++++++.+ +.+|..+. ++++.|++++|.+.+..+..+..+++|++|++++
T Consensus 9 l~~l~~l~~~~~~l----------------------~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 64 (290)
T 1p9a_G 9 VASHLEVNCDKRNL----------------------TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64 (290)
T ss_dssp STTCCEEECTTSCC----------------------SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT
T ss_pred cCCccEEECCCCCC----------------------CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC
Confidence 66788888877643 34454432 5899999999999888888899999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccccccccccccccc
Q 011233 219 CSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFE 298 (490)
Q Consensus 219 ~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 298 (490)
|.++ .++.. ..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+
T Consensus 65 -n~l~---~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 65 -AELT---KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp -SCCC---EEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred -CccC---cccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 8885 34433 67999999999998765 678888999999999999999999666789999999999999999888
Q ss_pred ccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCC
Q 011233 299 SLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 299 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|+++.+|..+...++|+.|++++|.+.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 7777788999999999999998877677789999999999999999999998889999999999999987
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.2e-23 Score=200.78 Aligned_cols=255 Identities=16% Similarity=0.184 Sum_probs=196.2
Q ss_pred CCccceeeecccccccc-ccCC--CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCC-CC-CcccCCCCcEEec
Q 011233 26 LTEVRYFEWHQFPLETL-NING--ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTK-LP-DLSLARNLEILDL 100 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l-~~~~--~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~-~~-~~~~l~~L~~L~L 100 (490)
....++++++++.+..- +..+ ++++.|++++|.+.+.+..+..+++|++|++++|.+.+. ++ .+..+++|++|++
T Consensus 46 ~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 46 ESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp STTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred chhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 34578899988877644 4444 899999999999998776677899999999999986654 55 6788999999999
Q ss_pred CCCCCCcccchhhhccccCcEEEccCC-CCCC-cCCcccc-cCCccEEeecCC-CCCCCCcccccchhhhhhhhhccCCc
Q 011233 101 GSCSSLTETHSSIQYLNKLEVLDLRHC-ESLG-SLPTSIH-SKYIEELDFVGC-SKLKNHPAISSSLIPLLSLIKVGIKE 176 (490)
Q Consensus 101 ~~n~~~~~~~~~l~~l~~L~~L~Ls~n-~~~~-~~p~~~~-l~~L~~L~ls~n-~~~~~~~~~~~~~~~~L~~~~~~~~~ 176 (490)
++|.+.+..+..++.+++|++|++++| .+.+ .++..+. +++|++|++++| .+.+. .
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------------------~ 185 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--------------------H 185 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--------------------H
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--------------------H
Confidence 999888888888999999999999999 4443 3555555 899999999998 54321 1
Q ss_pred CCccccccc-cCcEEEeccC--CCc-ccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCC-CCCc
Q 011233 177 LPSSIECLS-KLDRLSIQDC--TRL-ENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCP-KLER 251 (490)
Q Consensus 177 lp~~~~~l~-~L~~L~L~~n--~~~-~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~-~~~~ 251 (490)
++..+..++ +|++|++++| .+. +.++..+..+++|++|++++|..++ +..+..+..+++|++|++++|. ....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 234456788 9999999998 444 4566677889999999999954365 4556678889999999999985 2222
Q ss_pred cCccccCccccceeEccCccccccchhhHhhc-cccccccccccccccccCccccC
Q 011233 252 LPDELGNSKALEELRVEGAAIRERLPESLGQL-ALLCELKMIKCSSFESLPSSLCM 306 (490)
Q Consensus 252 ~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~ 306 (490)
....+.++++|++|++++| ++. ..+..+ ..++.|+++.|.+.+..|..++.
T Consensus 264 ~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 2235778999999999999 443 234444 35888889999999888876654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=190.49 Aligned_cols=227 Identities=16% Similarity=0.153 Sum_probs=144.9
Q ss_pred CCcEEecCCCCCCcccch---hhhccccCcEEEccCCCCCCcCCccc--c-cCCccEEeecCCCCCCCCcccccchhhhh
Q 011233 94 NLEILDLGSCSSLTETHS---SIQYLNKLEVLDLRHCESLGSLPTSI--H-SKYIEELDFVGCSKLKNHPAISSSLIPLL 167 (490)
Q Consensus 94 ~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~--~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L 167 (490)
.++.+.+.++.+....-. .+..+++|++|++++|.+.+..|..+ . +++|++|++++|.+.+..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------- 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------- 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-------
Confidence 456666766654432111 12234557777776666555555554 3 5555555555554433211100
Q ss_pred hhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCC
Q 011233 168 SLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCP 247 (490)
Q Consensus 168 ~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~ 247 (490)
...+..+++|++|++++ |.++ +..+..+..+++|++|++++|.
T Consensus 138 ----------------------------------~~~~~~~~~L~~L~Ls~-n~l~--~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 138 ----------------------------------ELQQWLKPGLKVLSIAQ-AHSP--AFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp ----------------------------------HHHTTBCSCCCEEEEEC-CSSC--CCCTTSCCCCTTCCEEECCSCT
T ss_pred ----------------------------------HHHhhhccCCCEEEeeC-CCcc--hhhHHHhccCCCCCEEECCCCC
Confidence 01123444555555555 4443 3333445555555555555555
Q ss_pred CCCc--c--CccccCccccceeEccCccccccchh----hHhhccccccccccccccccccCccccCc---cccceeecc
Q 011233 248 KLER--L--PDELGNSKALEELRVEGAAIRERLPE----SLGQLALLCELKMIKCSSFESLPSSLCML---KYLTSLAII 316 (490)
Q Consensus 248 ~~~~--~--p~~~~~l~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~Ls 316 (490)
+.+. + +..+..+++|++|++++|+++. ++. .++.+++|++|++++|.+.+..|..+..+ ++|++|+++
T Consensus 181 l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 181 GLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred CccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 4432 1 1223567888888888888865 333 35678899999999998888777766665 699999999
Q ss_pred cccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCC
Q 011233 317 DCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLER 369 (490)
Q Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~ 369 (490)
+|++. .+|..+. ++|++|++++|+++++|. +..+++|++|++++|.++.
T Consensus 260 ~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 260 FAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 99977 6677664 799999999999999875 6788999999999999863
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=6.8e-23 Score=201.42 Aligned_cols=101 Identities=12% Similarity=-0.038 Sum_probs=56.9
Q ss_pred EEcCCCCcccc-cccccCCCCCCEEecCCCCCCCCCC-----CcccCC-CCcEEecCCCCCCcccchhhhcc-----ccC
Q 011233 52 LKMPGRKVKQL-WNDVRNLVNLKYIDLSHSESLTKLP-----DLSLAR-NLEILDLGSCSSLTETHSSIQYL-----NKL 119 (490)
Q Consensus 52 L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-----~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~~L 119 (490)
+++++|++++. |..+...++|++|++++|.+....+ .+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 56667777653 3444444457777777776544332 344555 67777777766666555555554 666
Q ss_pred cEEEccCCCCCCcCCcccc-----c-CCccEEeecCCCC
Q 011233 120 EVLDLRHCESLGSLPTSIH-----S-KYIEELDFVGCSK 152 (490)
Q Consensus 120 ~~L~Ls~n~~~~~~p~~~~-----l-~~L~~L~ls~n~~ 152 (490)
++|++++|.+.+..+..+. . ++|++|++++|.+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 6666666664433333222 1 4555555555543
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=7.8e-24 Score=210.12 Aligned_cols=248 Identities=15% Similarity=0.136 Sum_probs=146.3
Q ss_pred ccchhhhccccCcEEEccCCCCCCcCCc----ccc-cCCccEEeecCCCCCC---CCcccccchhhhhhhhhccCCcCCc
Q 011233 108 ETHSSIQYLNKLEVLDLRHCESLGSLPT----SIH-SKYIEELDFVGCSKLK---NHPAISSSLIPLLSLIKVGIKELPS 179 (490)
Q Consensus 108 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~-l~~L~~L~ls~n~~~~---~~~~~~~~~~~~L~~~~~~~~~lp~ 179 (490)
.++..+..+++|++|++++|.+....+. .+. +++|++|++++|.... .+|..+ ..+..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~--------------~~l~~ 88 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL--------------RLLLQ 88 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHH--------------HHHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHH--------------HHHHH
Confidence 4556777788888888888865443222 233 5666666666653211 111100 01112
Q ss_pred cccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCC--CCCcccccCCCCcEEEccCCCCCCccC----
Q 011233 180 SIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLE--SLPNNLCMFKSLASLEIINCPKLERLP---- 253 (490)
Q Consensus 180 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~--~l~~~~~~l~~L~~L~l~~n~~~~~~p---- 253 (490)
.+ ..+++|++|++++ |.++..+ .+|..+..+++|++|++++|.+....+
T Consensus 89 ~l------------------------~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 143 (386)
T 2ca6_A 89 AL------------------------LKCPKLHTVRLSD-NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143 (386)
T ss_dssp HH------------------------TTCTTCCEEECCS-CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH
T ss_pred HH------------------------hhCCcccEEECCC-CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH
Confidence 22 3445555555555 4443100 134444555555555555555432222
Q ss_pred ccccCc---------cccceeEccCcccc-ccch---hhHhhcccccccccccccccc-----ccCccccCccccceeec
Q 011233 254 DELGNS---------KALEELRVEGAAIR-ERLP---ESLGQLALLCELKMIKCSSFE-----SLPSSLCMLKYLTSLAI 315 (490)
Q Consensus 254 ~~~~~l---------~~L~~L~ls~n~l~-~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L 315 (490)
..+..+ ++|++|++++|+++ +.++ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|
T Consensus 144 ~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~L 223 (386)
T 2ca6_A 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223 (386)
T ss_dssp HHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEEC
T ss_pred HHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEEC
Confidence 222222 66777777777765 2233 355566777777777776652 23335667777888888
Q ss_pred cccccc----ccCCcccCCccccceeeccCccccc-----CCccc--cCCCCCCEEeCcCCCCCC-----Cchhh-hccC
Q 011233 316 IDCKNF----KRLPNELGNLKCLVVLIVKGTAIRE-----VPESL--GQLSSIVRLDLSNNNLER-----TPASL-YQLS 378 (490)
Q Consensus 316 s~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~--~~l~~L~~L~Ls~n~l~~-----l~~~l-~~l~ 378 (490)
++|.+. +.+|..+..+++|++|++++|.+++ +|..+ +.+++|++|++++|.++. +|..+ ..++
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 887764 5566677777888888888888776 35555 337888888888888886 67666 4578
Q ss_pred CCCEEecCCCCCcccc
Q 011233 379 SIKYLKLFDNNFKHRL 394 (490)
Q Consensus 379 ~L~~L~ls~n~~~~~l 394 (490)
+|++|++++|++.+..
T Consensus 304 ~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 304 DLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTSBSCTTS
T ss_pred CceEEEccCCcCCcch
Confidence 8888888888876544
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=9.9e-24 Score=209.34 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=43.1
Q ss_pred ccCCCCccEEEcCCCCccc-----ccccccCCCCCCEEecCCCCCC---CCCC-Cc-------ccCCCCcEEecCCCCCC
Q 011233 43 NINGENLVSLKMPGRKVKQ-----LWNDVRNLVNLKYIDLSHSESL---TKLP-DL-------SLARNLEILDLGSCSSL 106 (490)
Q Consensus 43 ~~~~~~L~~L~Ls~n~i~~-----l~~~~~~l~~L~~L~Ls~n~~~---~~~~-~~-------~~l~~L~~L~L~~n~~~ 106 (490)
+..+++|++|+|++|.++. ++..+..+++|++|++++|.+. +.+| .+ ..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3445666666666666653 2233555666666666664321 2222 11 34455555555555544
Q ss_pred c----ccchhhhccccCcEEEccCCC
Q 011233 107 T----ETHSSIQYLNKLEVLDLRHCE 128 (490)
Q Consensus 107 ~----~~~~~l~~l~~L~~L~Ls~n~ 128 (490)
. .+|..+..+++|++|++++|.
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 4 234444555555555555544
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4e-21 Score=178.79 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=145.6
Q ss_pred CCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccc
Q 011233 210 SLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCEL 289 (490)
Q Consensus 210 ~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 289 (490)
..+++++++ +.+ ..+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 15 ~~~~l~~~~-~~l---~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 15 GKKEVDCQG-KSL---DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGTEEECTT-CCC---SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCeEEecCC-CCc---cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence 345666766 566 45555443 577888888877777777777888888888888888888666678888888888
Q ss_pred cccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCc-cccCCCCCCEEeCcCCCCC
Q 011233 290 KMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPE-SLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 290 ~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~L~Ls~n~l~ 368 (490)
++++|.+.+..+..+..+++|++|++++|++.+..+..|..+++|++|++++|+++++|. .++.+++|++|++++|+++
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 888888877777777888999999999998887777778899999999999999999774 7899999999999999999
Q ss_pred CCc-hhhhccCCCCEEecCCCCCccc
Q 011233 369 RTP-ASLYQLSSIKYLKLFDNNFKHR 393 (490)
Q Consensus 369 ~l~-~~l~~l~~L~~L~ls~n~~~~~ 393 (490)
.+| ..+..+++|++|++++|++.+.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 885 4688899999999999998765
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4e-21 Score=177.40 Aligned_cols=179 Identities=19% Similarity=0.158 Sum_probs=131.6
Q ss_pred cccccccCcEEEeccCC-CcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccC
Q 011233 180 SIECLSKLDRLSIQDCT-RLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGN 258 (490)
Q Consensus 180 ~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~ 258 (490)
.+..+++|++|++++|. +.+..+..|.++++|++|++++||.++ +..+..+..+++|++|++++|.+.+ +|. +..
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~--~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~ 125 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT--YIDPDALKELPLLKFLGIFNTGLKM-FPD-LTK 125 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC--EECTTSEECCTTCCEEEEEEECCCS-CCC-CTT
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee--EcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccc
Confidence 45566777777777775 444444467777777777777666664 2223456777788888887776655 555 667
Q ss_pred ccccc---eeEccCc-cccccchhhHhhccccc-cccccccccccccCccccCccccceeeccccc-ccccCCcccCCc-
Q 011233 259 SKALE---ELRVEGA-AIRERLPESLGQLALLC-ELKMIKCSSFESLPSSLCMLKYLTSLAIIDCK-NFKRLPNELGNL- 331 (490)
Q Consensus 259 l~~L~---~L~ls~n-~l~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l- 331 (490)
+++|+ +|++++| .+++..+..|..+++|+ +|++++|.+. .+|......++|++|++++|+ +.+..+..|.++
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence 77777 8888888 78775556688888888 8888887776 444433333789999999995 666667778888
Q ss_pred cccceeeccCcccccCCccccCCCCCCEEeCcCC
Q 011233 332 KCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNN 365 (490)
Q Consensus 332 ~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n 365 (490)
++|+.|++++|+++++|.. .+++|+.|+++++
T Consensus 205 ~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp BCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 9999999999999998865 6889999999875
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.9e-21 Score=185.30 Aligned_cols=195 Identities=20% Similarity=0.257 Sum_probs=168.8
Q ss_pred ccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcc
Q 011233 181 IECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSK 260 (490)
Q Consensus 181 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 260 (490)
...+++|++|++++|.+.. ++ .+..+++|++|++++ +.+ ..++. +..+++|++|++++|.+.+ ++ .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~-n~i---~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKD-NQI---TDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCS-SCC---CCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCT
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccC-CcC---CCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCC
Confidence 4578899999999987765 44 588999999999999 788 44555 8899999999999998665 34 588899
Q ss_pred ccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeecc
Q 011233 261 ALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVK 340 (490)
Q Consensus 261 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 340 (490)
+|++|++++|++++ ++. +..+++|++|++++|.+.+..+ +..+++|++|++++|++.+. +. +..+++|+.|+++
T Consensus 108 ~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 108 SIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKAD 181 (308)
T ss_dssp TCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred CCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECC
Confidence 99999999999988 554 8999999999999988776544 78899999999999987664 33 8999999999999
Q ss_pred CcccccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCcc
Q 011233 341 GTAIREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKH 392 (490)
Q Consensus 341 ~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~ 392 (490)
+|.+++++. +..+++|++|++++|+++.++ .+..+++|++|++++|++.+
T Consensus 182 ~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 182 DNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred CCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence 999999876 788999999999999999988 48899999999999999754
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.8e-21 Score=183.20 Aligned_cols=209 Identities=16% Similarity=0.172 Sum_probs=127.3
Q ss_pred cceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCC
Q 011233 29 VRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSL 106 (490)
Q Consensus 29 L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~ 106 (490)
+..+.+..+.+.++ ...+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 21 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred HHHHHhCCCCcCceecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC
Confidence 34444555555554 555777888888888777775 56777888888888777554433 777778888888877765
Q ss_pred cccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccccccc
Q 011233 107 TETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSK 186 (490)
Q Consensus 107 ~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~ 186 (490)
+. ..+..+++|++|++++|.+. .++....+++|++|++++|.+.+. +. +..+++
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~----------------------~~-l~~l~~ 152 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNI----------------------SP-LAGLTN 152 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCC----------------------GG-GGGCTT
T ss_pred Cc--hhhcCCCCCCEEECCCCCCC-CchhhcCCCCCCEEECCCCccCcC----------------------cc-ccCCCC
Confidence 43 35777777777777777633 344322266677777766643321 11 445566
Q ss_pred CcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeE
Q 011233 187 LDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELR 266 (490)
Q Consensus 187 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 266 (490)
|++|++++|.+.+. +. +..+++|++|++++ |.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 153 L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~-n~l~---~~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~ 223 (308)
T 1h6u_A 153 LQYLSIGNAQVSDL-TP-LANLSKLTTLKADD-NKIS---DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223 (308)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCTTCCEEECCS-SCCC---CCGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEE
T ss_pred ccEEEccCCcCCCC-hh-hcCCCCCCEEECCC-CccC---cChh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEE
Confidence 66666666655442 22 56666666666666 5553 2222 5556666666666655544332 55556666666
Q ss_pred ccCccccc
Q 011233 267 VEGAAIRE 274 (490)
Q Consensus 267 ls~n~l~~ 274 (490)
+++|.+++
T Consensus 224 l~~N~i~~ 231 (308)
T 1h6u_A 224 LTNQTITN 231 (308)
T ss_dssp EEEEEEEC
T ss_pred ccCCeeec
Confidence 66666554
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=2.4e-22 Score=197.50 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=154.0
Q ss_pred eeeecccccccc----ccCCCCccEEEcCCCCccccc-----ccccCCC-CCCEEecCCCCCCCCCC-CcccC-----CC
Q 011233 31 YFEWHQFPLETL----NINGENLVSLKMPGRKVKQLW-----NDVRNLV-NLKYIDLSHSESLTKLP-DLSLA-----RN 94 (490)
Q Consensus 31 ~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~i~~l~-----~~~~~l~-~L~~L~Ls~n~~~~~~~-~~~~l-----~~ 94 (490)
+++++.|.+++. ....++|++|++++|.++..+ ..+..++ +|++|++++|.+.+..+ .+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467788888776 445566999999999998765 5677888 89999999998776655 55554 89
Q ss_pred CcEEecCCCCCCcccchhhhc----c-ccCcEEEccCCCCCCcCCcccc------cCCccEEeecCCCCCCCCcccccch
Q 011233 95 LEILDLGSCSSLTETHSSIQY----L-NKLEVLDLRHCESLGSLPTSIH------SKYIEELDFVGCSKLKNHPAISSSL 163 (490)
Q Consensus 95 L~~L~L~~n~~~~~~~~~l~~----l-~~L~~L~Ls~n~~~~~~p~~~~------l~~L~~L~ls~n~~~~~~~~~~~~~ 163 (490)
|++|++++|.+.+..+..+.. + ++|++|++++|.+.+..+..+. .++|++|++++|.+.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------ 155 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS------ 155 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH------
Confidence 999999999988777665544 3 8999999999985544443332 2589999999886543311
Q ss_pred hhhhhhhhccCCcCCccccccc-cCcEEEeccCCCccccccc----ccCC-CCCCEEecccCCCCCCCC--CCCccccc-
Q 011233 164 IPLLSLIKVGIKELPSSIECLS-KLDRLSIQDCTRLENISSS----IFKL-KSLQYIEIKRCSNLKSLE--SLPNNLCM- 234 (490)
Q Consensus 164 ~~~L~~~~~~~~~lp~~~~~l~-~L~~L~L~~n~~~~~~~~~----~~~l-~~L~~L~L~~~n~l~~~~--~l~~~~~~- 234 (490)
..++..+..++ +|++|++++|.+.+..+.. +... ++|++|++++ |.++..+ .++..+..
T Consensus 156 -----------~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 156 -----------DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp -----------HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHHS
T ss_pred -----------HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHHHHHHHHhcC
Confidence 12223344444 7888888888877655533 3344 4888888888 6664211 14444544
Q ss_pred CCCCcEEEccCCCCCCccC----ccccCccccceeEccCccccc
Q 011233 235 FKSLASLEIINCPKLERLP----DELGNSKALEELRVEGAAIRE 274 (490)
Q Consensus 235 l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~ls~n~l~~ 274 (490)
.++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~ 267 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTT
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccc
Confidence 3477777777776655433 234556677777777777544
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=1.5e-19 Score=168.03 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=153.1
Q ss_pred ccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccce
Q 011233 185 SKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEE 264 (490)
Q Consensus 185 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 264 (490)
...++++++++.+. .+|..+. ++++.|++++ +.++ +..+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~-n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQS-TGLA--TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTT-SCCC--CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccC-CCcC--ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 45778888886654 4565444 6889999999 7875 445567888999999999999888888888889999999
Q ss_pred eEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccc
Q 011233 265 LRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAI 344 (490)
Q Consensus 265 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (490)
|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..|+.+++|++|++++|++
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 99999999986677888999999999999988877777788899999999999998877777899999999999999999
Q ss_pred ccCC-ccccCCCCCCEEeCcCCCCCCC
Q 011233 345 REVP-ESLGQLSSIVRLDLSNNNLERT 370 (490)
Q Consensus 345 ~~~p-~~~~~l~~L~~L~Ls~n~l~~l 370 (490)
+++| ..+..+++|++|++++|.++.-
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9966 5788999999999999999843
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.2e-19 Score=186.90 Aligned_cols=182 Identities=22% Similarity=0.290 Sum_probs=155.6
Q ss_pred cCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcccccee
Q 011233 186 KLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEEL 265 (490)
Q Consensus 186 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 265 (490)
+++.|++++|.+.+ +|..+ +++|++|++++ |.+ +.+| ..+++|++|++++|.+.+ +|. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~-N~l---~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQ-NAL---ISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCS-SCC---SCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcC-CCC---cccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence 89999999998876 77655 37899999999 888 5667 457999999999998877 777 654 99999
Q ss_pred EccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccc
Q 011233 266 RVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIR 345 (490)
Q Consensus 266 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 345 (490)
++++|++++ +|. .+++|++|++++|.+.+ +|. .+++|++|++++|++.+ +|. +. ++|+.|++++|.++
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 999999999 776 68999999999998876 665 57899999999999776 776 66 89999999999999
Q ss_pred cCCccccCCCCC-------CEEeCcCCCCCCCchhhhccCCCCEEecCCCCCcccccc
Q 011233 346 EVPESLGQLSSI-------VRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFKHRLLT 396 (490)
Q Consensus 346 ~~p~~~~~l~~L-------~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~~~l~~ 396 (490)
.+|. +.. +| +.|++++|+++.+|..+..+++|+.|++++|++.+.++.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 9998 654 77 999999999999999999999999999999998765543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.4e-19 Score=176.92 Aligned_cols=234 Identities=20% Similarity=0.170 Sum_probs=149.3
Q ss_pred ceeeeccccccccc-cCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC--CcccCCCCcE-EecCCCC
Q 011233 30 RYFEWHQFPLETLN-INGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP--DLSLARNLEI-LDLGSCS 104 (490)
Q Consensus 30 ~~L~l~~~~l~~l~-~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~-L~L~~n~ 104 (490)
+.++.++++++.+. .-.+++++|+|++|+|+.+| ..|.++++|++|+|++|++.+.+| .|.+++++++ +.+++|+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 45677778888872 23468999999999999988 468899999999999998777666 6788888776 5556677
Q ss_pred CCcccchhhhccccCcEEEccCCCCCCcCCcccc--cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCcccc
Q 011233 105 SLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH--SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIE 182 (490)
Q Consensus 105 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~ 182 (490)
+....|..|.++++|++|++++|.+. .+|.... ..++..+++.++.....++.. .|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~--------------------~f~ 150 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN--------------------SFV 150 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTT--------------------SST
T ss_pred ccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhcccccccccccc--------------------chh
Confidence 77777888899999999999998744 4444333 667778888775444333221 222
Q ss_pred cc-ccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCc-ccccCCCCcEEEccCCCCCCccCccccCcc
Q 011233 183 CL-SKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPN-NLCMFKSLASLEIINCPKLERLPDELGNSK 260 (490)
Q Consensus 183 ~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 260 (490)
.+ ..++.|++++|.+.. ++.......+|+++++.++|.+ +.+|. .|..+++|++|++++|.+....+..+.
T Consensus 151 ~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l---~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~--- 223 (350)
T 4ay9_X 151 GLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNL---EELPNDVFHGASGPVILDISRTRIHSLPSYGLE--- 223 (350)
T ss_dssp TSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTC---CCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---
T ss_pred hcchhhhhhccccccccC-CChhhccccchhHHhhccCCcc---cCCCHHHhccCcccchhhcCCCCcCccChhhhc---
Confidence 22 246666776665543 3333334456666666655555 44443 456666777777776655443333333
Q ss_pred ccceeEccCc-cccccchhhHhhccccccccccc
Q 011233 261 ALEELRVEGA-AIRERLPESLGQLALLCELKMIK 293 (490)
Q Consensus 261 ~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~ 293 (490)
.|+.|.+.++ .++. +| .+..+++|+.+++.+
T Consensus 224 ~L~~L~~l~~~~l~~-lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 224 NLKKLRARSTYNLKK-LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TCCEEECTTCTTCCC-CC-CTTTCCSCCEEECSC
T ss_pred cchHhhhccCCCcCc-CC-CchhCcChhhCcCCC
Confidence 3333333332 2333 45 355666666666654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.3e-19 Score=174.16 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=29.7
Q ss_pred ccCCccccceeeccCcccccCCccccCCCCCCEEeCcC-CCCCCCchhhhccCCCCEEecCCC
Q 011233 327 ELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSN-NNLERTPASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 327 ~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~-n~l~~l~~~l~~l~~L~~L~ls~n 388 (490)
+|.++++|++|++++|+++.+|.. .+.+|+.|.+.+ ++++.+| .+..+++|+.++++++
T Consensus 197 ~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 345555555555555555555531 233444444433 3345555 3555666666666543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.1e-18 Score=179.86 Aligned_cols=191 Identities=18% Similarity=0.243 Sum_probs=137.4
Q ss_pred CCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEcc
Q 011233 46 GENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLR 125 (490)
Q Consensus 46 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 125 (490)
+.++++|++++|+++++|..+. ++|++|++++|.+. .+| ..+++|++|++++|.+.+ +|. +.. +|++|+++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred cCCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 4588999999999988886553 78999999998866 566 567889999999988776 666 554 88999998
Q ss_pred CCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccc
Q 011233 126 HCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSI 205 (490)
Q Consensus 126 ~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~ 205 (490)
+|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+.+ +|. +
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~----------------------lp~---~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM----------------------LPE---LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC----------------------CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc----------------------CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence 887544 776 67888888888875432 333 35678888888887766 665 5
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCC-------cEEEccCCCCCCccCccccCccccceeEccCccccccchh
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSL-------ASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPE 278 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L-------~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~ 278 (490)
. ++|++|++++ |.+ ..+|. +.. +| +.|++++|.+. .+|..+..+++|++|++++|.+++..|.
T Consensus 179 ~--~~L~~L~Ls~-N~L---~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 179 P--ESLEALDVST-NLL---ESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C--TTCCEEECCS-SCC---SSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h--CCCCEEECcC-CCC---Cchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 4 7888888888 777 45555 333 55 77777776655 4666666677777777777777776676
Q ss_pred hHhhccc
Q 011233 279 SLGQLAL 285 (490)
Q Consensus 279 ~~~~l~~ 285 (490)
.+..++.
T Consensus 249 ~l~~l~~ 255 (571)
T 3cvr_A 249 SLSQQTA 255 (571)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 6666543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=5.6e-19 Score=159.28 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=117.4
Q ss_pred cccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeec
Q 011233 260 KALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIV 339 (490)
Q Consensus 260 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 339 (490)
+++++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666644445666667777777766665555555677778888888888777666666788888888899
Q ss_pred cCcccccCC-ccccCCCCCCEEeCcCCCCCCCch-hhhccCCCCEEecCCCCCccccccccccccCCcccchhhhhhhhc
Q 011233 340 KGTAIREVP-ESLGQLSSIVRLDLSNNNLERTPA-SLYQLSSIKYLKLFDNNFKHRLLTLSVDLNLVPNVLSEIINDRWR 417 (490)
Q Consensus 340 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ls~n~~~~~l~~l~~~~n~~~~~~~~~~~~~~~ 417 (490)
++|+++++| ..+..+++|++|++++|+++.++. .+..+++|++|++++|++.+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----------------------- 164 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----------------------- 164 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-----------------------
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-----------------------
Confidence 888888866 457888999999999999988764 4677899999999999764332
Q ss_pred cccceeeecCeeeeccchhhhcccccceeeeEeccccccccccc
Q 011233 418 KLSFHVKVGSRVCISLGMKFQSGLGIKHFQFQTALGRKVWRMTG 461 (490)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~~~~~~p~~~~~~~~ 461 (490)
+.+++|+++.|+++|.+|++++....
T Consensus 165 ------------------~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 ------------------PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ------------------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ------------------CCHHHHHHHHHhCCceeeccCccccC
Confidence 23455677888888888887765544
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.9e-19 Score=168.24 Aligned_cols=170 Identities=24% Similarity=0.279 Sum_probs=104.3
Q ss_pred CCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccc
Q 011233 207 KLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALL 286 (490)
Q Consensus 207 ~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 286 (490)
.+++|++|++++ +.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|
T Consensus 44 ~l~~L~~L~l~~-~~i~---~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 44 ELNSIDQIIANN-SDIK---SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHTCCEEECTT-SCCC---CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hcCcccEEEccC-CCcc---cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 344555555555 4442 222 24455555555555554444322 5555666666666666555 22 35556666
Q ss_pred ccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCC
Q 011233 287 CELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNN 366 (490)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~ 366 (490)
++|++++|.+.+. ..+..+++|+.|++++|++.+. ..++.+++|++|++++|++++++. +..+++|++|++++|+
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc
Confidence 6666666555442 2355666677777777765543 456777777777777777777655 6777778888888887
Q ss_pred CCCCchhhhccCCCCEEecCCCCCc
Q 011233 367 LERTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 367 l~~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
++.++ .+..+++|+.|++++|++.
T Consensus 190 i~~l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 190 ISDLR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCBCG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCCh-hhccCCCCCEEECcCCccc
Confidence 77776 3777778888888777653
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=5.4e-18 Score=152.77 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=96.9
Q ss_pred cEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCC
Q 011233 50 VSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCE 128 (490)
Q Consensus 50 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 128 (490)
+.+++++++++.+|..+ .++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46677777777777544 3477777777777665444 45677777777777776665555556666677777776665
Q ss_pred CCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCC
Q 011233 129 SLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKL 208 (490)
Q Consensus 129 ~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l 208 (490)
+. .+|.. .+..+++|++|++++|.+.+..+..+..+
T Consensus 88 l~-~~~~~-------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 123 (208)
T 2o6s_A 88 LQ-SLPNG-------------------------------------------VFDKLTQLKELALNTNQLQSLPDGVFDKL 123 (208)
T ss_dssp CC-CCCTT-------------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CC-ccCHh-------------------------------------------HhcCccCCCEEEcCCCcCcccCHhHhccC
Confidence 32 22211 12334445555555544443333334555
Q ss_pred CCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhc
Q 011233 209 KSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQL 283 (490)
Q Consensus 209 ~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 283 (490)
++|++|++++ |.++ +..+..+..+++|++|++++|.+.+ .++.|+.|+++.|+++|.+|.+++.+
T Consensus 124 ~~L~~L~l~~-N~l~--~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 124 TQLKDLRLYQ-NQLK--SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTCCEEECCS-SCCS--CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CcCCEEECCC-Cccc--eeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 5555555555 4443 2222234445555555555553322 23345555555555555555544433
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.5e-18 Score=164.98 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=70.2
Q ss_pred ccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCC
Q 011233 28 EVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSS 105 (490)
Q Consensus 28 ~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~ 105 (490)
++..+.+..+.++++ ...+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 25 ~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 344445555555555 455667777777777776664 36667777777777776554333 66677777777777665
Q ss_pred CcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCC
Q 011233 106 LTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCS 151 (490)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~ 151 (490)
.+ + ..+..+++|++|++++|.+. .++....+++|+.|++++|.
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~-~~~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSC
T ss_pred CC-C-hhhccCCCCCEEECCCCcCC-CChhhcCCCCCCEEEccCCc
Confidence 44 2 23666666666666666533 23222125555555555553
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=8e-19 Score=156.80 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=105.4
Q ss_pred cCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCcccccee
Q 011233 234 MFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSL 313 (490)
Q Consensus 234 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 313 (490)
.+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4455555555555443 333 35555666666666665543 2356666777777777766666666667777778888
Q ss_pred ecccccccccCCcccCCccccceeeccCcc-cccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCc
Q 011233 314 AIIDCKNFKRLPNELGNLKCLVVLIVKGTA-IREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 314 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
++++|++.+..+..++.+++|++|++++|. ++.+| .+..+++|++|++++|+++.++ .+..+++|++|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 888887777667777788888888888887 66676 5778888888888888888877 6788888888888888753
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.3e-18 Score=168.92 Aligned_cols=176 Identities=18% Similarity=0.172 Sum_probs=144.0
Q ss_pred CEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCcccc-CccccceeEccCccccccchhhHhhcccccccc
Q 011233 212 QYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELG-NSKALEELRVEGAAIRERLPESLGQLALLCELK 290 (490)
Q Consensus 212 ~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 290 (490)
+.+++++ +.+ ..+|..+ .+.++.|++++|.+.+..+..+. .+++|++|++++|++++..+..|..+++|++|+
T Consensus 21 ~~l~c~~-~~l---~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSK-QQL---PNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCS-SCC---SSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCC-CCc---CccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 4667777 666 4556543 34578888888877776666676 788999999999999886667888899999999
Q ss_pred ccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCccc----cCCCCCCEEeCcCCC
Q 011233 291 MIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPESL----GQLSSIVRLDLSNNN 366 (490)
Q Consensus 291 l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~----~~l~~L~~L~Ls~n~ 366 (490)
+++|.+.+..+..+..+++|++|+|++|++.+..+..|.++++|+.|+|++|+++.+|..+ ..+++|+.|+|++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 9998887777777889999999999999988888889999999999999999999988554 579999999999999
Q ss_pred CCCCc-hhhhccCC--CCEEecCCCCCccc
Q 011233 367 LERTP-ASLYQLSS--IKYLKLFDNNFKHR 393 (490)
Q Consensus 367 l~~l~-~~l~~l~~--L~~L~ls~n~~~~~ 393 (490)
++.+| ..+..++. ++.|++++|++...
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99986 56777877 48899999998644
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=8.7e-18 Score=153.77 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=121.5
Q ss_pred CcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeeccc
Q 011233 238 LASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIID 317 (490)
Q Consensus 238 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 317 (490)
-+.++.+++. .+.+|..+ .++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3455555532 33444433 26677777777777776666777777777777777776555555667888889999999
Q ss_pred ccccccCCcccCCccccceeeccCcccccCCccccCCCCCCEEeCcCCCCCCCc-hhhhccCCCCEEecCCCCCccccc
Q 011233 318 CKNFKRLPNELGNLKCLVVLIVKGTAIREVPESLGQLSSIVRLDLSNNNLERTP-ASLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
|++.+..+..|..+++|++|++++|+++.+|..+..+++|++|++++|+++.+| ..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 888777777788999999999999999999999999999999999999999886 567889999999999999876654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=6.6e-18 Score=175.76 Aligned_cols=190 Identities=20% Similarity=0.203 Sum_probs=111.3
Q ss_pred CCccceeeecccccccc--ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCC
Q 011233 26 LTEVRYFEWHQFPLETL--NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSC 103 (490)
Q Consensus 26 ~~~L~~L~l~~~~l~~l--~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n 103 (490)
+.++..+.+..+.+.++ ...+++|+.|++++|.+..++ .+..+++|++|+|++|.+.+.. .+..+++|++|+|++|
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCC
Confidence 33455555555555555 455666777777777766664 4666677777777776654433 3666677777777776
Q ss_pred CCCcccchhhhccccCcEEEccCCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccc
Q 011233 104 SSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIEC 183 (490)
Q Consensus 104 ~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~ 183 (490)
.+.+ + ..+..+++|++|+|++|.+. .++....+++|+.|++++|.+.+. ..+..
T Consensus 98 ~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-----------------------~~l~~ 151 (605)
T 1m9s_A 98 KIKD-L-SSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-----------------------TVLSR 151 (605)
T ss_dssp CCCC-C-TTSTTCTTCCEEECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC-----------------------GGGGS
T ss_pred CCCC-C-hhhccCCCCCEEEecCCCCC-CCccccCCCccCEEECCCCccCCc-----------------------hhhcc
Confidence 6544 2 24666666777777666633 333322266666666666643321 23445
Q ss_pred cccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCC
Q 011233 184 LSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLE 250 (490)
Q Consensus 184 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~ 250 (490)
+++|+.|+|++|.+.+..| +..+++|+.|+|++ |.++ .+| .+..+++|+.|++++|.+.+
T Consensus 152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~-N~i~---~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK-NHIS---DLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS-SCCC---BCG-GGTTCTTCSEEECCSEEEEC
T ss_pred cCCCCEEECcCCcCCCchh--hccCCCCCEEECcC-CCCC---CCh-HHccCCCCCEEEccCCcCcC
Confidence 5666666666666655444 66666666666666 5553 222 35566666666666665544
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=151.62 Aligned_cols=154 Identities=17% Similarity=0.213 Sum_probs=121.5
Q ss_pred cEEEccCCCCCCccCccccCccccceeEccCccccccch-hhHhhccccccccccccccccccCccccCccccceeeccc
Q 011233 239 ASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLP-ESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIID 317 (490)
Q Consensus 239 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 317 (490)
+++++++|.+. .+|..+ .+.+++|++++|++++..+ ..|..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666665433 345433 2345677777777777433 3477788888888888777777677788888899999999
Q ss_pred ccccccCCcccCCccccceeeccCcccccC-CccccCCCCCCEEeCcCCCCCCC-chhhhccCCCCEEecCCCCCccccc
Q 011233 318 CKNFKRLPNELGNLKCLVVLIVKGTAIREV-PESLGQLSSIVRLDLSNNNLERT-PASLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
|++.+..+..|.++++|++|++++|+++++ |..|..+++|++|++++|+++++ |..+..+++|++|++++|++.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 988887787889999999999999999995 68889999999999999999987 7788899999999999999876544
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.3e-17 Score=171.63 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=149.1
Q ss_pred CCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEcc
Q 011233 46 GENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLR 125 (490)
Q Consensus 46 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 125 (490)
+..+..+.+..+.+..+. .+..+++|+.|++++|.+ ..++.+..+++|++|+|++|.+.+..| +..+++|++|+|+
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCC-CCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCC-CCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 344566677777777654 356788999999999885 456788999999999999998877655 8899999999999
Q ss_pred CCCCCCcCCcccccCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccc
Q 011233 126 HCESLGSLPTSIHSKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSI 205 (490)
Q Consensus 126 ~n~~~~~~p~~~~l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~ 205 (490)
+|.+ ..+|....+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+
T Consensus 96 ~N~l-~~l~~l~~l~~L~~L~Ls~N~l~~----------------------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l 149 (605)
T 1m9s_A 96 ENKI-KDLSSLKDLKKLKSLSLEHNGISD----------------------I-NGLVHLPQLESLYLGNNKITDI--TVL 149 (605)
T ss_dssp SSCC-CCCTTSTTCTTCCEEECTTSCCCC----------------------C-GGGGGCTTCSEEECCSSCCCCC--GGG
T ss_pred CCCC-CCChhhccCCCCCEEEecCCCCCC----------------------C-ccccCCCccCEEECCCCccCCc--hhh
Confidence 9974 445533338999999999986543 1 2356788899999999887765 458
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccc
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRE 274 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~ 274 (490)
..+++|+.|+|++ |.+. .++. +..+++|+.|++++|.+.+. | .+..+++|+.|++++|.+.+
T Consensus 150 ~~l~~L~~L~Ls~-N~l~---~~~~-l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 150 SRLTKLDTLSLED-NQIS---DIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GSCTTCSEEECCS-SCCC---CCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred cccCCCCEEECcC-CcCC---Cchh-hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 8889999999998 7774 3333 77888999999998877653 3 47888899999999988876
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=1.6e-17 Score=150.96 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=106.6
Q ss_pred cccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeec
Q 011233 260 KALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIV 339 (490)
Q Consensus 260 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 339 (490)
+.+++|++++|++++..+..|..+++|++|++++|.+.+..|..+.++++|++|+|++|++.+..+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 46677777777776645556777777777777777777666777778888888888888877666666788899999999
Q ss_pred cCcccccC-CccccCCCCCCEEeCcCCCCCCCc-hhhhccCCCCEEecCCCCCccc
Q 011233 340 KGTAIREV-PESLGQLSSIVRLDLSNNNLERTP-ASLYQLSSIKYLKLFDNNFKHR 393 (490)
Q Consensus 340 ~~n~l~~~-p~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~ls~n~~~~~ 393 (490)
++|+++++ |..|..+++|++|++++|+++.++ ..+..+++|++|++++|++...
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 99999985 578889999999999999999885 4578899999999999998653
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=5.1e-18 Score=151.59 Aligned_cols=154 Identities=11% Similarity=0.164 Sum_probs=89.7
Q ss_pred cccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccc
Q 011233 182 ECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKA 261 (490)
Q Consensus 182 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~ 261 (490)
+.+++|+.|++++|.+. .++ .+..+++|++|++++ +.++ .+ ..+..+++|++|++++|.+.+..|..+..+++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~-n~~~---~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINN-IHAT---NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEES-CCCS---CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccC-CCCC---cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 55667777777776655 344 466677777777777 4442 22 24556666677777666666555666666666
Q ss_pred cceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccC
Q 011233 262 LEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKG 341 (490)
Q Consensus 262 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (490)
|++|++++|++++..|..+..+++|++|++++|...+.+ | .+..+++|++|++++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~------------------------~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI------------------------M-PLKTLPELKSLNIQF 168 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC------------------------G-GGGGCSSCCEEECTT
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc------------------------H-hhcCCCCCCEEECCC
Confidence 666666666666555555555555555555555433333 3 244455555555555
Q ss_pred cccccCCccccCCCCCCEEeCcCCCCC
Q 011233 342 TAIREVPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 342 n~l~~~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
|++++++ .+..+++|++|++++|++.
T Consensus 169 n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 169 DGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CCCcChH-HhccCCCCCEEEeeCcccC
Confidence 5555544 4555566666666666554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=1.9e-17 Score=150.55 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=124.6
Q ss_pred CEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccc
Q 011233 212 QYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKM 291 (490)
Q Consensus 212 ~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l 291 (490)
+.++.++ +.+ ..+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|++++..|..|.++++|++|++
T Consensus 14 ~~v~c~~-~~l---~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRG-KGL---TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTT-SCC---SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCC-CCc---CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 4566666 556 45565443 57888888888777666667888888888888888888877888888889999999
Q ss_pred cccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCCCCCEEeCcCCCCC
Q 011233 292 IKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 292 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~ 368 (490)
++|.+.+..+..+.++++|++|++++|++.+..|..|..+++|++|++++|.+++++ ..+..+++|++|++++|.+.
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888877666666788899999999999988888889999999999999999999966 56888999999999999886
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=149.62 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=113.4
Q ss_pred CEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccC-ccccCccccceeEccCccccccchhhHhhcccccccc
Q 011233 212 QYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLP-DELGNSKALEELRVEGAAIRERLPESLGQLALLCELK 290 (490)
Q Consensus 212 ~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 290 (490)
+.+++++ +.+ +.+|..+ .+.+++|++++|.+.+..| ..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus 14 ~~l~~s~-n~l---~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSN-QKL---NKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCS-SCC---SSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCC-CCc---ccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 3566666 555 3445433 2345677777766655533 3466777777888877777775556777788888888
Q ss_pred ccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccC-CccccCCCCCCEEeCcCCCCC
Q 011233 291 MIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREV-PESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 291 l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
+++|.+.+..+..+..+++|++|++++|++.+..|..|..+++|++|++++|+++++ |..|..+++|++|++++|.+.
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888777776666778888888888888888887788888889999999999999885 678888999999999999887
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=6.5e-17 Score=147.91 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=121.8
Q ss_pred CCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccccccc
Q 011233 211 LQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELK 290 (490)
Q Consensus 211 L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 290 (490)
-+.++.++ +.+ +.+|..+ .++|++|++++|.+.+..|..+..+++|++|++++|++++..+..|..+++|++|+
T Consensus 21 ~~~v~c~~-~~l---~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRS-KRH---ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTT-SCC---SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEccC-CCc---CccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 44566666 555 5555544 36788888888887777777788888888888888888775555678888888888
Q ss_pred ccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCCCCCEEeCcCCCCCC
Q 011233 291 MIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLER 369 (490)
Q Consensus 291 l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~ 369 (490)
+++|.+.+..+..+..+++|+.|++++|++. .+|..+..+++|++|++++|+++++| ..+..+++|+.|++++|.+..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8888877766666788899999999999866 67888899999999999999999977 568889999999999999884
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.2e-17 Score=154.35 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=55.1
Q ss_pred CCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEcc
Q 011233 46 GENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLR 125 (490)
Q Consensus 46 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 125 (490)
+.+++.++++++.++.++ .+..+++|++|++++|.+. .++.+..+++|++|++++|.+.+..+ ++++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 344555566666666554 4555666666666666533 34456666666666666665554433 6666666666666
Q ss_pred CCCCCCcCCcccccCCccEEeecCC
Q 011233 126 HCESLGSLPTSIHSKYIEELDFVGC 150 (490)
Q Consensus 126 ~n~~~~~~p~~~~l~~L~~L~ls~n 150 (490)
+|.+ ..+|.... ++|++|++++|
T Consensus 94 ~N~l-~~l~~~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 94 RNRL-KNLNGIPS-ACLSRLFLDNN 116 (263)
T ss_dssp SSCC-SCCTTCCC-SSCCEEECCSS
T ss_pred CCcc-CCcCcccc-CcccEEEccCC
Confidence 6653 22333222 44555555544
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=6.8e-19 Score=182.10 Aligned_cols=180 Identities=23% Similarity=0.208 Sum_probs=130.4
Q ss_pred CCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCC-------------CCCccCccccCccccceeE-ccCccc
Q 011233 207 KLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCP-------------KLERLPDELGNSKALEELR-VEGAAI 272 (490)
Q Consensus 207 ~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~-------------~~~~~p~~~~~l~~L~~L~-ls~n~l 272 (490)
.+++|+.|++++ |.+ +.+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~-n~L---~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 347 TDEQLFRCELSV-EKS---TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp TTTTSSSCCCCH-HHH---HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cCccceeccCCh-hhH---HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 444555555555 444 3445555555555555554332 4455666677777777777 555554
Q ss_pred cccchh------hHhh--ccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCccc
Q 011233 273 RERLPE------SLGQ--LALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAI 344 (490)
Q Consensus 273 ~~~~~~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (490)
.. ++. .+.. ...|+.|++++|.+.+ +|. ++.+++|+.|++++|++. .+|..++.+++|+.|++++|.+
T Consensus 423 ~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 423 DD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp HH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred ch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence 33 221 1111 1368889999987766 566 888999999999999876 7788899999999999999999
Q ss_pred ccCCccccCCCCCCEEeCcCCCCCCC--chhhhccCCCCEEecCCCCCccccc
Q 011233 345 REVPESLGQLSSIVRLDLSNNNLERT--PASLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 345 ~~~p~~~~~l~~L~~L~Ls~n~l~~l--~~~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
+++| .++.+++|++|+|++|+++++ |..+..+++|+.|++++|++.+..+
T Consensus 499 ~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 499 ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9988 788999999999999999987 8889999999999999998765543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-17 Score=154.40 Aligned_cols=168 Identities=23% Similarity=0.303 Sum_probs=91.6
Q ss_pred cccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccc
Q 011233 184 LSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALE 263 (490)
Q Consensus 184 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~ 263 (490)
+.+++.++++++.+.+.. .+..+++|++|++++ +.+ ..++ .+..+++|++|++++|.+.+..+ +..+++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~-n~i---~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDN-SNI---QSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTT-SCC---CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcC-CCc---ccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCC
Confidence 444555556655444322 355566666666666 455 3333 35555566666665554443322 55555555
Q ss_pred eeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcc
Q 011233 264 ELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTA 343 (490)
Q Consensus 264 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (490)
+|++++|++++ +|.. .. ++|+.|++++|++.+. + .++.+++|+.|++++|+
T Consensus 89 ~L~L~~N~l~~-l~~~-------------------------~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 89 ELSVNRNRLKN-LNGI-------------------------PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNK 139 (263)
T ss_dssp EEECCSSCCSC-CTTC-------------------------CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSC
T ss_pred EEECCCCccCC-cCcc-------------------------cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCc
Confidence 55555555554 2221 11 4555555555554432 2 35556666666666666
Q ss_pred cccCCccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCCCc
Q 011233 344 IREVPESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 344 l~~~p~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~~~ 391 (490)
+++++ .+..+++|++|++++|+++.+ ..+..+++|+.|++++|++.
T Consensus 140 i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 140 LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 66654 455666666666666666655 35566666666666666653
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=7.1e-17 Score=158.28 Aligned_cols=175 Identities=16% Similarity=0.095 Sum_probs=125.3
Q ss_pred cEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccc-cCCCCcEEEccCCCCCCccCccccCccccceeE
Q 011233 188 DRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLC-MFKSLASLEIINCPKLERLPDELGNSKALEELR 266 (490)
Q Consensus 188 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 266 (490)
+.++++++.+. .+|..+. +.++.|++++ |.++ +..+..+. .+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~-N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSH-NNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCS-SCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCC-CCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 56777765544 3554332 3577788887 7774 23334455 677888888888777766666777888888888
Q ss_pred ccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCccc---CCccccceeeccCcc
Q 011233 267 VEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNEL---GNLKCLVVLIVKGTA 343 (490)
Q Consensus 267 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~l~~L~~L~L~~n~ 343 (490)
+++|++++..+..|..+++|++|++++|.+.+..+..+..+++|+.|+|++|++.+..+..| ..+++|+.|++++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 88888877556677788888888888888777777778888888888888887666444444 567888888888888
Q ss_pred cccCC-ccccCCCC--CCEEeCcCCCCC
Q 011233 344 IREVP-ESLGQLSS--IVRLDLSNNNLE 368 (490)
Q Consensus 344 l~~~p-~~~~~l~~--L~~L~Ls~n~l~ 368 (490)
++.+| ..+..++. ++.|++++|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 88877 56666776 478888888776
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.9e-19 Score=183.93 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=67.1
Q ss_pred CcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeeccc
Q 011233 238 LASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIID 317 (490)
Q Consensus 238 L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~ 317 (490)
|+.|++++|.+.+ +|. +..+++|++|++++|.++. +|..++.+++|+.|++++|.+.+ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4445555444333 343 4555555555555555553 45555555555555555555444 34 455566666666666
Q ss_pred ccccccC-CcccCCccccceeeccCcccccCCccc----cCCCCCCEEeC
Q 011233 318 CKNFKRL-PNELGNLKCLVVLIVKGTAIREVPESL----GQLSSIVRLDL 362 (490)
Q Consensus 318 n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~p~~~----~~l~~L~~L~L 362 (490)
|++.+.. |..++.+++|+.|++++|.++++|+.. ..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6655554 666666666777777777666654432 23667777654
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=1.3e-16 Score=170.08 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=78.3
Q ss_pred CCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccC
Q 011233 47 ENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRH 126 (490)
Q Consensus 47 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 126 (490)
++++.|+|.+|.+..++..+ ++.++|+.|.+ ..++++.|.+. ..+..+..+++|++|+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i-------------~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSI-------------DEDDDIENRMV-MPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCcccc-------------cCcccccccee-cChhhhccCCCCcEEECCC
Confidence 45666666666665544322 33344444432 22233333322 4456666777777777777
Q ss_pred CCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccc
Q 011233 127 CESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSI 205 (490)
Q Consensus 127 n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~ 205 (490)
|.+ ..+|..++ +++|++|+|++|.+ ..+|..+..+++|++|+|++|.+. .+|..+
T Consensus 234 n~l-~~l~~~~~~l~~L~~L~Ls~N~l----------------------~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 289 (727)
T 4b8c_D 234 LQI-FNISANIFKYDFLTRLYLNGNSL----------------------TELPAEIKNLSNLRVLDLSHNRLT-SLPAEL 289 (727)
T ss_dssp SCC-SCCCGGGGGCCSCSCCBCTTSCC----------------------SCCCGGGGGGTTCCEEECTTSCCS-SCCSSG
T ss_pred CCC-CCCChhhcCCCCCCEEEeeCCcC----------------------cccChhhhCCCCCCEEeCcCCcCC-ccChhh
Confidence 763 35555444 56666666666532 234445556666666666666655 456666
Q ss_pred cCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCcc-ccceeEccCccccccchh
Q 011233 206 FKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSK-ALEELRVEGAAIRERLPE 278 (490)
Q Consensus 206 ~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~ls~n~l~~~~~~ 278 (490)
+.+++|++|+|++ |.+ +.+|..++.+++|++|++++|.+.+.+|..+..+. ....+++++|.+++.+|.
T Consensus 290 ~~l~~L~~L~L~~-N~l---~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 290 GSCFQLKYFYFFD-NMV---TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGGTTCSEEECCS-SCC---CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCCCCCEEECCC-CCC---CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6666666666666 555 45555566666666666666666555555443332 122345555555554443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=1.2e-16 Score=138.81 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=81.4
Q ss_pred cccceeEccCcccc-ccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceee
Q 011233 260 KALEELRVEGAAIR-ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLI 338 (490)
Q Consensus 260 ~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 338 (490)
++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555555 33555555556666666666554443 4455666666666666666655666556666777777
Q ss_pred ccCcccccCC--ccccCCCCCCEEeCcCCCCCCCch----hhhccCCCCEEecCCCCC
Q 011233 339 VKGTAIREVP--ESLGQLSSIVRLDLSNNNLERTPA----SLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 339 L~~n~l~~~p--~~~~~l~~L~~L~Ls~n~l~~l~~----~l~~l~~L~~L~ls~n~~ 390 (490)
+++|.++++| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777776654 566667777777777777776654 566677777777777764
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.5e-16 Score=138.13 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=73.5
Q ss_pred CCCcEEEccCCCCC-CccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceee
Q 011233 236 KSLASLEIINCPKL-ERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLA 314 (490)
Q Consensus 236 ~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 314 (490)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444443 34444444445555555555554442 3444445555555555544444444444455555555
Q ss_pred cccccccccC-CcccCCccccceeeccCcccccCCc----cccCCCCCCEEeCcCCCCCCCch
Q 011233 315 IIDCKNFKRL-PNELGNLKCLVVLIVKGTAIREVPE----SLGQLSSIVRLDLSNNNLERTPA 372 (490)
Q Consensus 315 Ls~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~L~Ls~n~l~~l~~ 372 (490)
+++|++.+.. +..+..+++|++|++++|.++++|. .+..+++|++|++++|.+.++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 5555544321 2456666677777777777776654 56677777777777777766654
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=6.6e-17 Score=172.35 Aligned_cols=130 Identities=21% Similarity=0.213 Sum_probs=75.7
Q ss_pred CCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccc
Q 011233 177 LPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDEL 256 (490)
Q Consensus 177 lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 256 (490)
+|..+..+++|++|+|++|.+. .+|..++.+++|++|+|++ |.+ ..+|..++.+++|++|++++|.+ +.+|..|
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~-N~l---~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~ 312 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSH-NRL---TSLPAELGSCFQLKYFYFFDNMV-TTLPWEF 312 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTT-SCC---SSCCSSGGGGTTCSEEECCSSCC-CCCCSST
T ss_pred CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcC-CcC---CccChhhcCCCCCCEEECCCCCC-CccChhh
Confidence 4444456666777777776665 5666666677777777777 666 35566666677777777776654 3556666
Q ss_pred cCccccceeEccCccccccchhhHhhcc-ccccccccccccccccCccccCccccceeecccc
Q 011233 257 GNSKALEELRVEGAAIRERLPESLGQLA-LLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDC 318 (490)
Q Consensus 257 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n 318 (490)
..+++|++|+|++|.+++.+|..+..+. .+..+++++|.+.+.+|. .|+.|+++.|
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 6677777777777777665666555442 223456666666665553 3444555544
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.4e-16 Score=135.27 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=93.3
Q ss_pred cccceeEccCcccc-ccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceee
Q 011233 260 KALEELRVEGAAIR-ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLI 338 (490)
Q Consensus 260 ~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~ 338 (490)
+++++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666666 44666666666677777766665544 4566777888888888887776777777788888888
Q ss_pred ccCcccccCC--ccccCCCCCCEEeCcCCCCCCCch----hhhccCCCCEEecCC
Q 011233 339 VKGTAIREVP--ESLGQLSSIVRLDLSNNNLERTPA----SLYQLSSIKYLKLFD 387 (490)
Q Consensus 339 L~~n~l~~~p--~~~~~l~~L~~L~Ls~n~l~~l~~----~l~~l~~L~~L~ls~ 387 (490)
+++|.++++| ..++.+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888854 778888888888888888887754 677788888888864
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=5.5e-16 Score=149.97 Aligned_cols=102 Identities=10% Similarity=0.029 Sum_probs=84.6
Q ss_pred hccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccc-eeeccCcccccCC-ccccCCCCCCE
Q 011233 282 QLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLV-VLIVKGTAIREVP-ESLGQLSSIVR 359 (490)
Q Consensus 282 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~p-~~~~~l~~L~~ 359 (490)
.+++|+++++.+|++....+..|.++++|+.+++.+| +...-+.+|.++++|+ .+++.+ .++.++ .+|.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4788999999988777666677888999999999887 5666667889999998 999988 777765 78889999999
Q ss_pred EeCcCCCCCCCc-hhhhccCCCCEEec
Q 011233 360 LDLSNNNLERTP-ASLYQLSSIKYLKL 385 (490)
Q Consensus 360 L~Ls~n~l~~l~-~~l~~l~~L~~L~l 385 (490)
+++++|+++.++ ..|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999884 57788999988864
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=1.4e-15 Score=135.10 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=99.5
Q ss_pred ceeEccCccccccchhhHhhccccccccccccccccccCc-cccCccccceeecccccccccCCcccCCccccceeeccC
Q 011233 263 EELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPS-SLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKG 341 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (490)
++++++++.++. +|..+. .++++|++++|.+.+..+. .+..+++|++|++++|++.+..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 566666666654 555333 2677777777666555443 367778888888888888887788888888899999999
Q ss_pred cccccCC-ccccCCCCCCEEeCcCCCCCCC-chhhhccCCCCEEecCCCCCccccc
Q 011233 342 TAIREVP-ESLGQLSSIVRLDLSNNNLERT-PASLYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 342 n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
|++++++ ..|..+++|++|++++|+++++ |..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9888854 5688899999999999999865 7778889999999999999876654
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=5.1e-15 Score=131.38 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=113.1
Q ss_pred ceeeecccccccc-ccCCCCccEEEcCCCCcccccc--cccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCC
Q 011233 30 RYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLWN--DVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSS 105 (490)
Q Consensus 30 ~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~--~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~ 105 (490)
++++++++.++.+ ..-..++++|++++|.++.++. .+..+++|++|++++|.+.+..| .|..+++|++|++++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 7889999999888 3334599999999999999874 38999999999999999888777 899999999999999999
Q ss_pred CcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCc
Q 011233 106 LTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHP 157 (490)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~ 157 (490)
.+..+..|.++++|++|++++|.+.+..|..+. +++|++|++++|++.+..+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 988888899999999999999998877788877 9999999999998876643
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=7.2e-16 Score=149.12 Aligned_cols=285 Identities=11% Similarity=0.001 Sum_probs=164.3
Q ss_pred CCccceeeecccc----ccccccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC--Cccc--------
Q 011233 26 LTEVRYFEWHQFP----LETLNINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP--DLSL-------- 91 (490)
Q Consensus 26 ~~~L~~L~l~~~~----l~~l~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~-------- 91 (490)
+.++++|.++++- +..+...+++|++|||++|.+......-+.++.++.+.+..+. +| .|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~----I~~~aF~~~~~~~~~g 99 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF----VPAYAFSNVVNGVTKG 99 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE----ECTTTTEEEETTEEEE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccc----cCHHHhcccccccccc
Confidence 5678888887652 1111222788899999988887322111222335555555552 33 5667
Q ss_pred CCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc--cCCccEEeecCCCCCCCCcccccchhhhhhh
Q 011233 92 ARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH--SKYIEELDFVGCSKLKNHPAISSSLIPLLSL 169 (490)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~ 169 (490)
+++|+++++.+ .+....+.+|.+|++|+.+++++|... .++...+ +.++..+......
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~------------------ 159 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSD------------------ 159 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTH------------------
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchh------------------
Confidence 88888888888 666666678888888888888887633 3443333 3334333332210
Q ss_pred hhccCCcCC-ccccccccCc-EEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCC
Q 011233 170 IKVGIKELP-SSIECLSKLD-RLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCP 247 (490)
Q Consensus 170 ~~~~~~~lp-~~~~~l~~L~-~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~ 247 (490)
.......+. ..|..+..|+ .+++.... .++..+. ..-....+++.+.+.++-
T Consensus 160 ~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~-----------------------~~~~~~~~~~~l~~~~~l 213 (329)
T 3sb4_A 160 AYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIM-----------------------KAGLQPRDINFLTIEGKL 213 (329)
T ss_dssp HHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHH-----------------------HTTCCGGGCSEEEEEECC
T ss_pred hhhccccccccccccccccceeEEecCCC---cHHHHHh-----------------------hcccCccccceEEEeeee
Confidence 000001111 1222333333 22222111 1111000 000123344555554421
Q ss_pred CCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccc-eeecccccccccCCc
Q 011233 248 KLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLT-SLAIIDCKNFKRLPN 326 (490)
Q Consensus 248 ~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~Ls~n~~~~~~~~ 326 (490)
...........+++|+++++++|+++...+.+|.++++|+++++.+| +...-+..|.++++|+ .+++.+ .+...-+.
T Consensus 214 ~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 214 DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTT
T ss_pred cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchh
Confidence 11111111123677888888887777755567888888888888775 5444556678888888 888877 55556667
Q ss_pred ccCCccccceeeccCcccccCC-ccccCCCCCCEEeC
Q 011233 327 ELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDL 362 (490)
Q Consensus 327 ~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~L 362 (490)
+|.++++|+.+++++|.++.++ .+|.++++|+.++.
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8889999999999888888876 58888999988863
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=1.2e-15 Score=133.37 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=103.6
Q ss_pred ccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccc
Q 011233 256 LGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLV 335 (490)
Q Consensus 256 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~ 335 (490)
+..+++|++|++++|.+++ +|......++|++|++++|.+.+. ..+..+++|++|++++|++.+..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4456677777777777775 444333333788888888776654 4577888899999999887765555558889999
Q ss_pred eeeccCcccccCCc--cccCCCCCCEEeCcCCCCCCCchh----hhccCCCCEEecCCCCCc
Q 011233 336 VLIVKGTAIREVPE--SLGQLSSIVRLDLSNNNLERTPAS----LYQLSSIKYLKLFDNNFK 391 (490)
Q Consensus 336 ~L~L~~n~l~~~p~--~~~~l~~L~~L~Ls~n~l~~l~~~----l~~l~~L~~L~ls~n~~~ 391 (490)
+|++++|.++.+|. .+..+++|++|++++|.++.+|.. +..+++|++||+++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999988886 788899999999999999988764 888999999999999753
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=7.4e-16 Score=130.86 Aligned_cols=125 Identities=18% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCcEEEccCCCCC-CccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeec
Q 011233 237 SLASLEIINCPKL-ERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAI 315 (490)
Q Consensus 237 ~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 315 (490)
++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444433 33444444444444444444444442 33444444444444444444434443344445555555
Q ss_pred cccccccc-CCcccCCccccceeeccCcccccCCc----cccCCCCCCEEeCc
Q 011233 316 IDCKNFKR-LPNELGNLKCLVVLIVKGTAIREVPE----SLGQLSSIVRLDLS 363 (490)
Q Consensus 316 s~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~p~----~~~~l~~L~~L~Ls 363 (490)
++|++.+. .+..++.+++|++|++++|.++++|. .+..+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55554332 22445566666666666666666554 45666677776665
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.4e-14 Score=126.66 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=105.3
Q ss_pred cceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccC
Q 011233 262 LEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKG 341 (490)
Q Consensus 262 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (490)
.+.+++++++++. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4567777777766 55433 25778888888777665566677888889999998887776677788999999999999
Q ss_pred cccccCC-ccccCCCCCCEEeCcCCCCCCCchh-hhccCCCCEEecCCCCCcccccc
Q 011233 342 TAIREVP-ESLGQLSSIVRLDLSNNNLERTPAS-LYQLSSIKYLKLFDNNFKHRLLT 396 (490)
Q Consensus 342 n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~ls~n~~~~~l~~ 396 (490)
|.++++| ..+..+++|++|++++|+++.+|.. +..+++|++|++++|++.+..+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 9999966 4578899999999999999988755 57799999999999998876653
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=129.39 Aligned_cols=128 Identities=20% Similarity=0.273 Sum_probs=100.3
Q ss_pred ceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCc
Q 011233 263 EELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGT 342 (490)
Q Consensus 263 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (490)
++++++++.++. +|..+. ++|++|++++|.+. .+|..+..+++|++|++++|++.+..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666666665 554332 46777777776654 55666777788888888888887777778888999999999999
Q ss_pred ccccCC-ccccCCCCCCEEeCcCCCCCCCch-hhhccCCCCEEecCCCCCcccc
Q 011233 343 AIREVP-ESLGQLSSIVRLDLSNNNLERTPA-SLYQLSSIKYLKLFDNNFKHRL 394 (490)
Q Consensus 343 ~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ls~n~~~~~l 394 (490)
+++.++ ..|..+++|++|++++|+++.+|. .+..+++|+.|++++|++....
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 999965 578899999999999999998865 5778999999999999986543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3e-14 Score=126.36 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=109.6
Q ss_pred ceeeecccccccc-ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCc
Q 011233 30 RYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLT 107 (490)
Q Consensus 30 ~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~ 107 (490)
++++++++.++.+ ..-.+++++|++++|.++.+|..+..+++|++|++++|.+.+..+ .|..+++|++|++++|.+.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 6788999999888 334579999999999999999999999999999999999887766 79999999999999999998
Q ss_pred ccchhhhccccCcEEEccCCCCCCcCCc-ccc-cCCccEEeecCCCCCCC
Q 011233 108 ETHSSIQYLNKLEVLDLRHCESLGSLPT-SIH-SKYIEELDFVGCSKLKN 155 (490)
Q Consensus 108 ~~~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~-l~~L~~L~ls~n~~~~~ 155 (490)
..|..|.++++|++|++++|.+. .+|. .+. +++|+.|++++|+....
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecC
Confidence 88889999999999999999855 5555 455 99999999999976543
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1e-13 Score=121.17 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=106.8
Q ss_pred cceeeecccccccc-ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCC
Q 011233 29 VRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSS 105 (490)
Q Consensus 29 L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~ 105 (490)
.+.+++++++++.+ ....++|++|++++|.+++++ ..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 46788888888888 445689999999999999887 457889999999999999776655 578999999999999998
Q ss_pred CcccchhhhccccCcEEEccCCCCCCcCCccc-c-cCCccEEeecCCCCCCCCc
Q 011233 106 LTETHSSIQYLNKLEVLDLRHCESLGSLPTSI-H-SKYIEELDFVGCSKLKNHP 157 (490)
Q Consensus 106 ~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~-l~~L~~L~ls~n~~~~~~~ 157 (490)
.+..+..+..+++|++|++++|.+. .+|... . +++|++|++++|++.+..+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8877778899999999999999855 555544 4 8999999999998776543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.5e-14 Score=123.35 Aligned_cols=107 Identities=21% Similarity=0.120 Sum_probs=61.3
Q ss_pred ccCCCCccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCCCcccCCCCcEEecCCCCCCcccchhhhccccCcEE
Q 011233 43 NINGENLVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLPDLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVL 122 (490)
Q Consensus 43 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 122 (490)
+..+.+|++|++++|.++.++......++|++|++++|.+.+. +.+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445666666666666666643222233666666666665443 556666666666666666554444444666666666
Q ss_pred EccCCCCCCcCCc--ccc-cCCccEEeecCCC
Q 011233 123 DLRHCESLGSLPT--SIH-SKYIEELDFVGCS 151 (490)
Q Consensus 123 ~Ls~n~~~~~~p~--~~~-l~~L~~L~ls~n~ 151 (490)
++++|. .+.+|. .+. +++|+.|++++|+
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNP 124 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence 666665 344444 333 5555555555553
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=1.7e-16 Score=141.75 Aligned_cols=129 Identities=22% Similarity=0.179 Sum_probs=85.2
Q ss_pred cccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCcccc
Q 011233 255 ELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCL 334 (490)
Q Consensus 255 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 334 (490)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 56666666666666666666 55 6666666777777666554 455555556677777777776554 33 46667777
Q ss_pred ceeeccCcccccCCc--cccCCCCCCEEeCcCCCCCCC-ch----------hhhccCCCCEEecCCCCC
Q 011233 335 VVLIVKGTAIREVPE--SLGQLSSIVRLDLSNNNLERT-PA----------SLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 335 ~~L~L~~n~l~~~p~--~~~~l~~L~~L~Ls~n~l~~l-~~----------~l~~l~~L~~L~ls~n~~ 390 (490)
++|++++|.+++++. .+..+++|++|++++|.+... |. .+..+++|++|| +|++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 777777777777543 567777888888888877643 22 266788888876 5544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=1.2e-12 Score=129.38 Aligned_cols=261 Identities=15% Similarity=0.094 Sum_probs=157.8
Q ss_pred CCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcc-cc-cCCccEE
Q 011233 69 LVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTS-IH-SKYIEEL 145 (490)
Q Consensus 69 l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~-l~~L~~L 145 (490)
+..++.+.+..+ +....+ .|.++ +|+.+.+..+ +...-..+|.++ +|+.+.+.+ . +..++.. +. +++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~-l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-T-LEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-T-CCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-C-ccEehHHHhhCcccCCee
Confidence 355556665532 222112 44443 5666666553 444444555553 566666654 2 3333332 22 6666666
Q ss_pred eecCCCCCCCCcccccchhhhhhhhhccCCcCCccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCC
Q 011233 146 DFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSL 225 (490)
Q Consensus 146 ~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~ 225 (490)
+++.|.+ ..++.......+|+.+.+.. .+...-...|.++++|+.+++.. + +
T Consensus 186 ~l~~n~l----------------------~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~-~-l--- 237 (401)
T 4fdw_A 186 DLSKTKI----------------------TKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE-N-V--- 237 (401)
T ss_dssp ECTTSCC----------------------SEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCT-T-C---
T ss_pred ecCCCcc----------------------eEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCC-C-c---
Confidence 6665432 22332111245667777664 23333344577777777777765 2 3
Q ss_pred CCCC-cccccCCCCcEEEccCCCCCCccCccccCccccceeEccCcccc-----ccchhhHhhccccccccccccccccc
Q 011233 226 ESLP-NNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIR-----ERLPESLGQLALLCELKMIKCSSFES 299 (490)
Q Consensus 226 ~~l~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~l~~n~~~~~ 299 (490)
..++ .+|.+ .+|+.+.+.+ .+...-..+|.++++|+.+++.++.+. ...+.+|.++++|+.+.+.+ .+...
T Consensus 238 ~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 238 STIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp CEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred cCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence 2222 33444 5777777744 344444556777888888888776654 33456788888888888874 45555
Q ss_pred cCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCC-CCCEEeCcCCCCC
Q 011233 300 LPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLS-SIVRLDLSNNNLE 368 (490)
Q Consensus 300 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~-~L~~L~Ls~n~l~ 368 (490)
-...|.++++|+.+++..+ +...-..+|.++ +|+.+++.+|.+..++ ..|.+++ +++.|.+..+.+.
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5567788888998888655 455556788888 8999999999888755 6677774 7888888776654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=1e-12 Score=129.94 Aligned_cols=241 Identities=11% Similarity=0.100 Sum_probs=109.2
Q ss_pred CCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhh
Q 011233 92 ARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLI 170 (490)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~ 170 (490)
+..++.+.+.+ .+...-..+|.++ +|+.+.+..+ +..++...+ -.+|+.+.+..+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~~-------------------- 167 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPST-------------------- 167 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTCCCCEEECCTT--------------------
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCCCceEEEeCCC--------------------
Confidence 45556666654 3444444555553 5666666543 333333222 234555554431
Q ss_pred hccCCcCC-ccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCC
Q 011233 171 KVGIKELP-SSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKL 249 (490)
Q Consensus 171 ~~~~~~lp-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~ 249 (490)
+..++ ..|.++++|+.+++.+|.+...-...|. ..+|+.+.+.. + ++ ..-..+|.++++|+.+++..+ +.
T Consensus 168 ---l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~-l~--~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 168 ---LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV-T-LK--EIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp ---CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT-T-CC--EECTTTTTTCTTCCCEECCTT-CC
T ss_pred ---ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC-c-hh--eehhhHhhCCCCCCEEecCCC-cc
Confidence 12222 3455556666666655544433333333 35566665543 2 32 111234555555555555542 22
Q ss_pred CccCccccCccccceeEccCccccccchhhHhhccccccccccccccc-----cccCccccCccccceeecccccccccC
Q 011233 250 ERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSF-----ESLPSSLCMLKYLTSLAIIDCKNFKRL 324 (490)
Q Consensus 250 ~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 324 (490)
..-..+|.+ .+|+.+.+. +.++..-..+|.++++|+.+.+.++... ..-+..|.++++|+.+++.+ .+...-
T Consensus 239 ~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 222233433 455555552 2333333445555555555555543322 12233444555555555542 233333
Q ss_pred CcccCCccccceeeccCcccccCC-ccccCCCCCCEEeCcCCCCCCC
Q 011233 325 PNELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLERT 370 (490)
Q Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l 370 (490)
..+|.++.+|+.+.+..+ ++.++ .+|.++ +|+.+++++|.+..+
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 344455555555555332 44432 344444 555555555544443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=1.6e-15 Score=135.34 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=63.4
Q ss_pred ccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCcccc
Q 011233 231 NLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYL 310 (490)
Q Consensus 231 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 310 (490)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++. +|..+..+++|++|++++|.+.+ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44444444444444443333 33 34444455555555555543 44444444555555555544433 22 24444555
Q ss_pred ceeecccccccccCC-cccCCccccceeeccCcccccC-Cc----------cccCCCCCCEEeCcCCCCC
Q 011233 311 TSLAIIDCKNFKRLP-NELGNLKCLVVLIVKGTAIREV-PE----------SLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 311 ~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~-p~----------~~~~l~~L~~L~Ls~n~l~ 368 (490)
++|++++|++.+..+ ..+..+++|++|++++|.+.+. |. .+..+++|++|| ++.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 555555555433211 2455555666666666665552 22 255667777765 44443
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=2.6e-12 Score=127.29 Aligned_cols=302 Identities=12% Similarity=0.056 Sum_probs=188.5
Q ss_pred ccCCCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC--CcccCCCCcEEecCCCCCCcccchhhhccccC
Q 011233 43 NINGENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP--DLSLARNLEILDLGSCSSLTETHSSIQYLNKL 119 (490)
Q Consensus 43 ~~~~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 119 (490)
|..|.+|+++.+.. .++.|. .+|.+|.+|+.+++..+ ...++ .|.++++|+.+.+.. .+......+|.++..+
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~-~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPL-MLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCT-TCCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccC-ceeeecceeeeccccc
Confidence 78899999999974 488886 77899999999999754 33333 788899999888876 3444455667766554
Q ss_pred cEEEccCCCCCCcCCc-ccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCCcCC-ccccccccCcEEEeccCC
Q 011233 120 EVLDLRHCESLGSLPT-SIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELP-SSIECLSKLDRLSIQDCT 196 (490)
Q Consensus 120 ~~L~Ls~n~~~~~~p~-~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp-~~~~~l~~L~~L~L~~n~ 196 (490)
+....... ..+.. .+. +++|+.+.+..+. ..++ ..|.++.+|+.+++..+
T Consensus 143 ~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~~-----------------------~~I~~~~F~~c~~L~~i~l~~~- 195 (394)
T 4fs7_A 143 EITIPEGV---TVIGDEAFATCESLEYVSLPDSM-----------------------ETLHNGLFSGCGKLKSIKLPRN- 195 (394)
T ss_dssp EEECCTTC---CEECTTTTTTCTTCCEEECCTTC-----------------------CEECTTTTTTCTTCCBCCCCTT-
T ss_pred ccccCccc---cccchhhhcccCCCcEEecCCcc-----------------------ceeccccccCCCCceEEEcCCC-
Confidence 44433322 22222 333 7888888876531 1222 34566677777777653
Q ss_pred CcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccc
Q 011233 197 RLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERL 276 (490)
Q Consensus 197 ~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~ 276 (490)
....-...|.++..|+.+.+.. +.. .+.+......+|+.+.+.. .....-...+..+..++.+.+..+... ..
T Consensus 196 ~~~I~~~~F~~~~~L~~i~~~~-~~~----~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~ 268 (394)
T 4fs7_A 196 LKIIRDYCFAECILLENMEFPN-SLY----YLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLR-IG 268 (394)
T ss_dssp CCEECTTTTTTCTTCCBCCCCT-TCC----EECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCE-EC
T ss_pred ceEeCchhhccccccceeecCC-Cce----EeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCcce-ee
Confidence 3333334567777777776655 221 2223333445677777654 222223345666777777777665432 23
Q ss_pred hhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCC
Q 011233 277 PESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLS 355 (490)
Q Consensus 277 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~ 355 (490)
...|..+..++.+...... .....+..+.+|+.+.+.++ +...-..+|.++.+|+.+++.++ ++.++ .+|.++.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp SCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 4466677777766655422 12234566777777777654 34444556777788888887644 66654 5677788
Q ss_pred CCCEEeCcCCCCCCC-chhhhccCCCCEEecCCC
Q 011233 356 SIVRLDLSNNNLERT-PASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 356 ~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n 388 (490)
+|+.+++..+ ++.+ ..+|..+++|+.+++..+
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 8888888765 6666 456777888888877544
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.42 E-value=5.4e-12 Score=125.02 Aligned_cols=195 Identities=13% Similarity=0.057 Sum_probs=90.3
Q ss_pred cccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCccccCc
Q 011233 180 SIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPDELGNS 259 (490)
Q Consensus 180 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l 259 (490)
.|.++++|+.+.+.++ ....-...|.++.+|+.+.+.. + ++ ..-..++..+..|+.+.+..+. ..+.+.....
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~-~-~~--~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~ 229 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR-N-LK--IIRDYCFAECILLENMEFPNSL--YYLGDFALSK 229 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT-T-CC--EECTTTTTTCTTCCBCCCCTTC--CEECTTTTTT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC-C-ce--EeCchhhccccccceeecCCCc--eEeehhhccc
Confidence 3455556666666542 2222233455556666665544 2 21 1112234455555555544321 1112222334
Q ss_pred cccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeec
Q 011233 260 KALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIV 339 (490)
Q Consensus 260 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 339 (490)
..|+.+.+... ++......+..+..++.+.+..+ ........+..+..++.+...... .....|..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---ecccccccccccccccc
Confidence 45555555432 12212334555556666555442 222233344555555555444332 11224555556666665
Q ss_pred cCcccccCC-ccccCCCCCCEEeCcCCCCCCC-chhhhccCCCCEEecCCC
Q 011233 340 KGTAIREVP-ESLGQLSSIVRLDLSNNNLERT-PASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 340 ~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ls~n 388 (490)
.++ ++.++ .+|.++.+|+.+++.. .++.+ ..+|.++++|+.+++..+
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT
T ss_pred ccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc
Confidence 443 44443 4455566666666643 25544 344555666666666543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4e-12 Score=110.14 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=73.2
Q ss_pred ccEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCC
Q 011233 49 LVSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHC 127 (490)
Q Consensus 49 L~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n 127 (490)
.+++++++|+++.+|..+. ++|++|++++|.+.+..| .|..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777775553 677777777777666655 5777777777777777777666666777777777777777
Q ss_pred CCCCcCCcccc-cCCccEEeecCCCCCCC
Q 011233 128 ESLGSLPTSIH-SKYIEELDFVGCSKLKN 155 (490)
Q Consensus 128 ~~~~~~p~~~~-l~~L~~L~ls~n~~~~~ 155 (490)
.+.+..+..+. +++|++|++++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 74443333344 77777888877766544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1.7e-12 Score=112.98 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=84.3
Q ss_pred ccccccccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCCc-cccCCCCCCEEeCcCC
Q 011233 287 CELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVPE-SLGQLSSIVRLDLSNN 365 (490)
Q Consensus 287 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~l~~L~~L~Ls~n 365 (490)
+.++++++.+ +.+|..+. ++|++|++++|++.+..|..|.++++|++|++++|+++++|. .|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4566666444 44555443 678888888888888778888899999999999999999774 4688999999999999
Q ss_pred CCCCCchh-hhccCCCCEEecCCCCCccccc
Q 011233 366 NLERTPAS-LYQLSSIKYLKLFDNNFKHRLL 395 (490)
Q Consensus 366 ~l~~l~~~-l~~l~~L~~L~ls~n~~~~~l~ 395 (490)
+++.+|.. +..+++|++|++++|++.....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99988754 8889999999999999865443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=5.3e-12 Score=109.41 Aligned_cols=105 Identities=12% Similarity=0.031 Sum_probs=91.9
Q ss_pred ccceeeecccccccc-ccCCCCccEEEcCCCCcccc-cccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCC
Q 011233 28 EVRYFEWHQFPLETL-NINGENLVSLKMPGRKVKQL-WNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCS 104 (490)
Q Consensus 28 ~L~~L~l~~~~l~~l-~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~ 104 (490)
..++++++++.++.+ ..-.+++++|+|++|.++++ |..|..+++|++|++++|++.+..+ .|..+++|++|++++|.
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 357899999999988 33458999999999999998 4778999999999999999887666 57899999999999999
Q ss_pred CCcccchhhhccccCcEEEccCCCCCCc
Q 011233 105 SLTETHSSIQYLNKLEVLDLRHCESLGS 132 (490)
Q Consensus 105 ~~~~~~~~l~~l~~L~~L~Ls~n~~~~~ 132 (490)
+.+..+..|.++++|++|++++|++...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8887778899999999999999986544
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=8.1e-12 Score=108.63 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=69.3
Q ss_pred cEEEcCCCCcccccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCC
Q 011233 50 VSLKMPGRKVKQLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCE 128 (490)
Q Consensus 50 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~ 128 (490)
+.+++++|+++.+|..+. ++|++|++++|.+.+..| .|..+++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776554 677777777777666655 66777777777777777666555556777777777777776
Q ss_pred CCCcCCcc-cc-cCCccEEeecCCCCCC
Q 011233 129 SLGSLPTS-IH-SKYIEELDFVGCSKLK 154 (490)
Q Consensus 129 ~~~~~p~~-~~-l~~L~~L~ls~n~~~~ 154 (490)
+. .+|.. +. +++|++|++++|++..
T Consensus 93 l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 44 44443 44 7777777777776544
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=2.5e-10 Score=112.97 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=65.4
Q ss_pred ccCCC-CccEEEcCCCCccccc-ccccCCCCCCEEecCCCCC--CCCCC--CcccCCCCcEEecCCCCCCcccchhhhcc
Q 011233 43 NINGE-NLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSES--LTKLP--DLSLARNLEILDLGSCSSLTETHSSIQYL 116 (490)
Q Consensus 43 ~~~~~-~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~--~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 116 (490)
|..++ .|+.+.+..+ ++.|. .+|.++.+|+.+.++.|.- ...++ .|..+.+|+.+.+.. .+......+|.++
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I~~~aF~~c 136 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEIDSEAFHHC 136 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEECTTTTTTC
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-ccceehhhhhhhh
Confidence 55553 4888888654 77765 6778888888888876531 22233 677777888777765 3444445677778
Q ss_pred ccCcEEEccCCCCCCcCCcccc--cCCccEEeecC
Q 011233 117 NKLEVLDLRHCESLGSLPTSIH--SKYIEELDFVG 149 (490)
Q Consensus 117 ~~L~~L~Ls~n~~~~~~p~~~~--l~~L~~L~ls~ 149 (490)
.+|+.+.+..+ ...++...+ +..|+.+.+..
T Consensus 137 ~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 137 EELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred cccccccccce--eeeecccceecccccccccccc
Confidence 88888887643 333433333 66777776654
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=4.1e-13 Score=131.49 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCCCEEecccCCCCCCCC--CCCccccc-CCCCcEEEccCCCCCCccCccc-cCccccceeEccCccccccchhhHh---
Q 011233 209 KSLQYIEIKRCSNLKSLE--SLPNNLCM-FKSLASLEIINCPKLERLPDEL-GNSKALEELRVEGAAIRERLPESLG--- 281 (490)
Q Consensus 209 ~~L~~L~L~~~n~l~~~~--~l~~~~~~-l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~ls~n~l~~~~~~~~~--- 281 (490)
+.|++|++++ +.++... .+...+.. .++|++|++++|.+.......+ ..+++|++|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4566777776 4453100 01111111 2466666666665543222222 2244566666666665542222221
Q ss_pred --hccccccccccccccccc----cCccccCccccceeeccccccccc----CCcccCCccccceeeccCccccc-----
Q 011233 282 --QLALLCELKMIKCSSFES----LPSSLCMLKYLTSLAIIDCKNFKR----LPNELGNLKCLVVLIVKGTAIRE----- 346 (490)
Q Consensus 282 --~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~----- 346 (490)
..++|++|++++|.+... ++..+...++|++|+|++|.+.+. ++..+...++|++|+|++|.+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 234455555555544321 222233344455555555543321 12233334444455555444443
Q ss_pred CCccccCCCCCCEEeCcCCCCC
Q 011233 347 VPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 347 ~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
++..+...++|++|+|++|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 2222333344444444444444
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=1.9e-12 Score=126.71 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=7.5
Q ss_pred ccccceeEccCccccc
Q 011233 259 SKALEELRVEGAAIRE 274 (490)
Q Consensus 259 l~~L~~L~ls~n~l~~ 274 (490)
.+.|++|++++|.+++
T Consensus 238 ~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 238 HPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCCH
T ss_pred CCCCCEEeccCCCCCH
Confidence 3444445554444443
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.11 E-value=2.6e-09 Score=105.60 Aligned_cols=313 Identities=10% Similarity=0.100 Sum_probs=172.2
Q ss_pred Cccceeeecccccccc----ccCCCCccEEEcCCCC---ccccc-ccccCCCCCCEEecCCCCCCCCCC--CcccCCCCc
Q 011233 27 TEVRYFEWHQFPLETL----NINGENLVSLKMPGRK---VKQLW-NDVRNLVNLKYIDLSHSESLTKLP--DLSLARNLE 96 (490)
Q Consensus 27 ~~L~~L~l~~~~l~~l----~~~~~~L~~L~Ls~n~---i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~ 96 (490)
..|+...+... ++.| |..|.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ...++ .|..+.+|+
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 35888888643 6666 8899999999998764 66675 77888999999888754 33333 788999999
Q ss_pred EEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCccEEeecCCCCCCCCcccccchhhhhhhhhccCC
Q 011233 97 ILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYIEELDFVGCSKLKNHPAISSSLIPLLSLIKVGIK 175 (490)
Q Consensus 97 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~ 175 (490)
.+.+.. .........|.++.+|+.+.+.++ ...+....+ ...|+.+.+..+-.
T Consensus 141 ~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~----------------------- 194 (394)
T 4gt6_A 141 TVTIPE-GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVT----------------------- 194 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCC-----------------------
T ss_pred cccccc-eeeeecccceecccccccccccce--eeEeccccccccceeEEEECCccc-----------------------
Confidence 999976 445555678899999999999764 444444333 66788887755211
Q ss_pred cC-CccccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCCCCCCCCCCcccccCCCCcEEEccCCCCCCccCc
Q 011233 176 EL-PSSIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSNLKSLESLPNNLCMFKSLASLEIINCPKLERLPD 254 (490)
Q Consensus 176 ~l-p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~l~~~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~ 254 (490)
.+ ...+..+..++................+........-.... .....+..+.+.. .....-..
T Consensus 195 ~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ip~-~v~~i~~~ 259 (394)
T 4gt6_A 195 RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRY--------------PSQREDPAFKIPN-GVARIETH 259 (394)
T ss_dssp EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC--------------CTTCCCSEEECCT-TEEEECTT
T ss_pred ccccchhhhccccceecccccccccccceeeccccccccccccc--------------ccccccceEEcCC-cceEcccc
Confidence 11 12344555565555544322111000011100000000000 0111222222211 11111223
Q ss_pred cccCccccceeEccCccccccchhhHhhccccccccccccccccccCccccCccccceeecccccccccCCcccCCcccc
Q 011233 255 ELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCL 334 (490)
Q Consensus 255 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L 334 (490)
+|..+..|+.+.+..+.. .....+|.+++.|+.+.+.. .+...-...|.++.+|+.+++.++ +...-..+|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 455566666666644322 22334566666666666643 333333445666667777776543 333344567777777
Q ss_pred ceeeccCcccccCC-ccccCCCCCCEEeCcCCCCCCCchhhhccCCCCEEecCCCC
Q 011233 335 VVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLERTPASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 335 ~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ls~n~ 389 (490)
+.+.+..+ ++.+. .+|.++++|+.+++.++... ...+..+.+|+.+.+..+.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC---------
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCC
Confidence 77777543 66665 56777777777777765422 1344556677777666553
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.5e-10 Score=112.57 Aligned_cols=103 Identities=23% Similarity=0.125 Sum_probs=72.5
Q ss_pred eeEccCc-cccccchhhHhhccccccccccc-cccccccCccccCccccceeecccccccccCCcccCCccccceeeccC
Q 011233 264 ELRVEGA-AIRERLPESLGQLALLCELKMIK-CSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKG 341 (490)
Q Consensus 264 ~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (490)
.++.+++ .+++ +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|++.+..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 6766 676 77777777777775 666666666677777777777777777777777777777777777777
Q ss_pred cccccCCc-cccCCCCCCEEeCcCCCCCC
Q 011233 342 TAIREVPE-SLGQLSSIVRLDLSNNNLER 369 (490)
Q Consensus 342 n~l~~~p~-~~~~l~~L~~L~Ls~n~l~~ 369 (490)
|+++++|. .+..++ |+.|++++|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77777664 334443 7777777777763
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=2.9e-10 Score=110.45 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=87.2
Q ss_pred cEEEcCCC-CcccccccccCCCCCCEEecCC-CCCCCCCC-CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccC
Q 011233 50 VSLKMPGR-KVKQLWNDVRNLVNLKYIDLSH-SESLTKLP-DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRH 126 (490)
Q Consensus 50 ~~L~Ls~n-~i~~l~~~~~~l~~L~~L~Ls~-n~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~ 126 (490)
..++++++ +++.+|. +..+++|++|+|++ |.+.+..+ .|..+++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 8999998 99999999999996 88776665 789999999999999999998889999999999999999
Q ss_pred CCCCCcCCcccc-cCCccEEeecCCCCCCC
Q 011233 127 CESLGSLPTSIH-SKYIEELDFVGCSKLKN 155 (490)
Q Consensus 127 n~~~~~~p~~~~-l~~L~~L~ls~n~~~~~ 155 (490)
|.+. .+|.... ...|+.|++++|.+...
T Consensus 90 N~l~-~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALE-SLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCS-CCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred Cccc-eeCHHHcccCCceEEEeeCCCccCC
Confidence 9855 5555444 44499999999977654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=1.4e-08 Score=99.68 Aligned_cols=75 Identities=7% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCCccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCCC--CcccCCCCcEEecCCCCCCcccchhhhccccCcEE
Q 011233 46 GENLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP--DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVL 122 (490)
Q Consensus 46 ~~~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 122 (490)
..+|+.+.+.. +++.|+ .+|.+|.+|+.+++..+ ...++ +|.++ +|+.+.+.. ++......+|.. .+|+.+
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTT-CCCSEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceecc-CCcccc
Confidence 34555555542 355554 45666666666666532 22222 44444 455555543 222222334443 256666
Q ss_pred EccC
Q 011233 123 DLRH 126 (490)
Q Consensus 123 ~Ls~ 126 (490)
.+.+
T Consensus 119 ~lp~ 122 (379)
T 4h09_A 119 EFPG 122 (379)
T ss_dssp ECCT
T ss_pred cCCC
Confidence 6543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=6.1e-08 Score=95.18 Aligned_cols=287 Identities=10% Similarity=0.087 Sum_probs=155.5
Q ss_pred ccCCCCCCEEecCCCCCCCCCC--CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEccCCCCCCcCCcccc-cCCc
Q 011233 66 VRNLVNLKYIDLSHSESLTKLP--DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLRHCESLGSLPTSIH-SKYI 142 (490)
Q Consensus 66 ~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-l~~L 142 (490)
+....+|+.+.+... ...++ +|.++.+|+.+++.. .+...-..+|.++ +|+.+.+..+ +..+....+ ..+|
T Consensus 42 ~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDL 115 (379)
T ss_dssp GGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCC
T ss_pred cccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce--eeEeccceeccCCc
Confidence 445567788777642 33343 678888888888865 3555555677776 6777776543 344444333 4567
Q ss_pred cEEeecCCCCCCCCcccccchhhhhhhhhccCCcCCc-cccccccCcEEEeccCCCcccccccccCCCCCCEEecccCCC
Q 011233 143 EELDFVGCSKLKNHPAISSSLIPLLSLIKVGIKELPS-SIECLSKLDRLSIQDCTRLENISSSIFKLKSLQYIEIKRCSN 221 (490)
Q Consensus 143 ~~L~ls~n~~~~~~~~~~~~~~~~L~~~~~~~~~lp~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~~n~ 221 (490)
+.+.+..+- ..+.. .|.+ .+++...+.. .....-...|..+..++...+...+.
T Consensus 116 ~~i~lp~~~-----------------------~~i~~~~F~~-~~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~ 170 (379)
T 4h09_A 116 DDFEFPGAT-----------------------TEIGNYIFYN-SSVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNK 170 (379)
T ss_dssp SEEECCTTC-----------------------CEECTTTTTT-CCCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCS
T ss_pred ccccCCCcc-----------------------cccccccccc-ceeeeeeccc-eeeccccchhcccccccccccccccc
Confidence 777775431 11111 1111 1344444333 12222223344555555555444111
Q ss_pred CCC---------CCCCCcccccCCCCcEEEccCCCCCCccCccccCccccceeEccCccccccchhhHhhcccccccccc
Q 011233 222 LKS---------LESLPNNLCMFKSLASLEIINCPKLERLPDELGNSKALEELRVEGAAIRERLPESLGQLALLCELKMI 292 (490)
Q Consensus 222 l~~---------~~~l~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~ 292 (490)
... .......+.....+..+.+.. .........+..+..++.+.+..+ +.......+..+..|+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp 248 (379)
T 4h09_A 171 NYVAENYVLYNKNKTILESYPAAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIP 248 (379)
T ss_dssp SEEEETTEEEETTSSEEEECCTTCCCSEEECCT-TCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEEC
T ss_pred eeecccceecccccceecccccccccccccccc-ceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcC
Confidence 100 001111222333444444333 122222334555666777666543 233234466677777777775
Q ss_pred ccccccccCccccCccccceeecccccccccCCcccCCccccceeeccCcccccCC-ccccCCCCCCEEeCcCCCCCCC-
Q 011233 293 KCSSFESLPSSLCMLKYLTSLAIIDCKNFKRLPNELGNLKCLVVLIVKGTAIREVP-ESLGQLSSIVRLDLSNNNLERT- 370 (490)
Q Consensus 293 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~l~~L~~L~Ls~n~l~~l- 370 (490)
. .+...-...+.++.+|+.+.+..+ +......+|.++.+|+.+.+.++.++.++ .+|.++.+|+.+++..+ ++.|
T Consensus 249 ~-~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 249 K-NVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp T-TCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred C-CccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 5 233333445666777777777543 33334456777788888888777777765 67777888888888643 6666
Q ss_pred chhhhccCCCCEEecCCC
Q 011233 371 PASLYQLSSIKYLKLFDN 388 (490)
Q Consensus 371 ~~~l~~l~~L~~L~ls~n 388 (490)
..+|.++++|+.+.+..+
T Consensus 326 ~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 326 VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTTTCTTCCCCCCCTT
T ss_pred HHHhhCCCCCCEEEECCc
Confidence 356777788887777543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=7.6e-10 Score=107.44 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=59.6
Q ss_pred ccCcEEEeccCCCcc-c-------ccccccCCCCCCEEecccCCCCCC-------CCCCCcccccCCCCcEEEccCCCCC
Q 011233 185 SKLDRLSIQDCTRLE-N-------ISSSIFKLKSLQYIEIKRCSNLKS-------LESLPNNLCMFKSLASLEIINCPKL 249 (490)
Q Consensus 185 ~~L~~L~L~~n~~~~-~-------~~~~~~~l~~L~~L~L~~~n~l~~-------~~~l~~~~~~l~~L~~L~l~~n~~~ 249 (490)
..++.|.+..+...+ . +......+++|+.|.+.. ..... .+.++..+..+|+|+.|.+++|...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~-~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGD-IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECC-CCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecC-cchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 456677776554331 1 122344577888888865 32210 0224445567788888888776222
Q ss_pred CccCccccCccccceeEccCccccccchhhHh--hcccccccccc
Q 011233 250 ERLPDELGNSKALEELRVEGAAIRERLPESLG--QLALLCELKMI 292 (490)
Q Consensus 250 ~~~p~~~~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~ 292 (490)
.++. + .+++|++|++..+.+.......+. .+++|+.|+++
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2333 3 267888888877776543333443 56777777764
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=5.5e-09 Score=101.38 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCCcEEEccCCCCCCccCcccc---CccccceeEccCcccccc----chhhHhhccccccccccccccc
Q 011233 235 FKSLASLEIINCPKLERLPDELG---NSKALEELRVEGAAIRER----LPESLGQLALLCELKMIKCSSF 297 (490)
Q Consensus 235 l~~L~~L~l~~n~~~~~~p~~~~---~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 297 (490)
+++|++|++.+|.+....+..+. .+++|++|+++.|.+++. ++..+..+++|+.|++++|.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 56666666666555432222221 355666666666666542 2223344555666666555443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=1.3e-08 Score=89.13 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=60.7
Q ss_pred cCccccceeeccccccccc----CCcccCCccccceeeccCccccc-----CCccccCCCCCCEEeC--cCCCCCC----
Q 011233 305 CMLKYLTSLAIIDCKNFKR----LPNELGNLKCLVVLIVKGTAIRE-----VPESLGQLSSIVRLDL--SNNNLER---- 369 (490)
Q Consensus 305 ~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~L~L--s~n~l~~---- 369 (490)
...++|++|+|++|.+... +...+...++|++|+|++|.|++ +...+...++|++|++ ++|.+..
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3345566666666665432 23334445678888888888776 4566777888999999 7899882
Q ss_pred -CchhhhccCCCCEEecCCCCC
Q 011233 370 -TPASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 370 -l~~~l~~l~~L~~L~ls~n~~ 390 (490)
+...+...++|++|++++|.+
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCcCEEeccCCCC
Confidence 456677788999999999975
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=4.8e-08 Score=85.47 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=36.7
Q ss_pred cccceeeccccccccc----CCcccCCccccceeec--cCccccc-----CCccccCCCCCCEEeCcCCCCC
Q 011233 308 KYLTSLAIIDCKNFKR----LPNELGNLKCLVVLIV--KGTAIRE-----VPESLGQLSSIVRLDLSNNNLE 368 (490)
Q Consensus 308 ~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L--~~n~l~~-----~p~~~~~l~~L~~L~Ls~n~l~ 368 (490)
++|++|+|++|.+... +...+...++|++|++ ++|.++. +...+...++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555555555554332 3334555566777777 6676665 3344555677888888877764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=2.5e-07 Score=85.14 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=57.6
Q ss_pred CCCccE--EEcCCCCccccccc----ccCCCCCCEEecCCCCCCC--CCC-CcccCCCCcEEecCCCCCCcccchhhhcc
Q 011233 46 GENLVS--LKMPGRKVKQLWND----VRNLVNLKYIDLSHSESLT--KLP-DLSLARNLEILDLGSCSSLTETHSSIQYL 116 (490)
Q Consensus 46 ~~~L~~--L~Ls~n~i~~l~~~----~~~l~~L~~L~Ls~n~~~~--~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 116 (490)
.+.|+. ++++.|....++.. ..++++|++|+|++|.+.+ .+| .+..+++|+.|+|++|.+.+. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 344544 56666654433321 1456777777777777655 233 345677777777777766654 223333
Q ss_pred c--cCcEEEccCCCCCCcCCcc-------cc-cCCccEEe
Q 011233 117 N--KLEVLDLRHCESLGSLPTS-------IH-SKYIEELD 146 (490)
Q Consensus 117 ~--~L~~L~Ls~n~~~~~~p~~-------~~-l~~L~~L~ 146 (490)
. +|++|++++|++.+.+|.. +. +++|+.||
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3 7777777777766655521 22 67777665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.25 E-value=2.4e-07 Score=85.26 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=48.1
Q ss_pred Cccccceeecccccccc--cCCcccCCccccceeeccCcccccCC--ccccCCCCCCEEeCcCCCCC-CCc-------hh
Q 011233 306 MLKYLTSLAIIDCKNFK--RLPNELGNLKCLVVLIVKGTAIREVP--ESLGQLSSIVRLDLSNNNLE-RTP-------AS 373 (490)
Q Consensus 306 ~l~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~l~~L~~L~Ls~n~l~-~l~-------~~ 373 (490)
++++|+.|+|++|++.+ .++..+..+++|+.|+|++|.++++. ..+..+ +|++|+|++|.+. .+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 44566666666666655 34455556677777777777776642 222233 7777777777776 333 23
Q ss_pred hhccCCCCEEe
Q 011233 374 LYQLSSIKYLK 384 (490)
Q Consensus 374 l~~l~~L~~L~ 384 (490)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55678887776
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=7.2e-07 Score=76.24 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=39.6
Q ss_pred CccEEEcCCCCccccc-ccccCCCCCCEEecCCCCCCCCC--CCcccC----CCCcEEecCCCC-CCcccchhhhccccC
Q 011233 48 NLVSLKMPGRKVKQLW-NDVRNLVNLKYIDLSHSESLTKL--PDLSLA----RNLEILDLGSCS-SLTETHSSIQYLNKL 119 (490)
Q Consensus 48 ~L~~L~Ls~n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~--~~~~~l----~~L~~L~L~~n~-~~~~~~~~l~~l~~L 119 (490)
+|++||++++.++..- ..+..+++|++|+|++|..++.. ..+..+ ++|++|++++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 4566666666554321 33455666666666665433221 123332 345666666554 332222344555555
Q ss_pred cEEEccCCC
Q 011233 120 EVLDLRHCE 128 (490)
Q Consensus 120 ~~L~Ls~n~ 128 (490)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=1e-05 Score=69.08 Aligned_cols=34 Identities=9% Similarity=0.143 Sum_probs=14.9
Q ss_pred CCcEEEccCCCCCCccCccccCccccceeEccCc
Q 011233 237 SLASLEIINCPKLERLPDELGNSKALEELRVEGA 270 (490)
Q Consensus 237 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ls~n 270 (490)
.|++|++++|.+...--..+..+++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444433322223344455555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=7.1e-05 Score=65.10 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=57.9
Q ss_pred ccCccccceeeccccccccc----CCcccCCccccceeeccCccccc-----CCccccCCCCCCEEeCcCCC---CC---
Q 011233 304 LCMLKYLTSLAIIDCKNFKR----LPNELGNLKCLVVLIVKGTAIRE-----VPESLGQLSSIVRLDLSNNN---LE--- 368 (490)
Q Consensus 304 ~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~L~Ls~n~---l~--- 368 (490)
+..-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.. +-+.+..-+.|++|+|++|. +.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 34445677777777765432 22233445678888888888876 44566667789999998653 34
Q ss_pred --CCchhhhccCCCCEEecCCCCC
Q 011233 369 --RTPASLYQLSSIKYLKLFDNNF 390 (490)
Q Consensus 369 --~l~~~l~~l~~L~~L~ls~n~~ 390 (490)
.+.+.+..-+.|+.|+++.|..
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 2345666678899999987753
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.00085 Score=54.37 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=46.7
Q ss_pred ceeeccCcccc--cCCccccCCCCCCEEeCcCCCCCCCc-hhhhccCCCCEEecCCCCCccc
Q 011233 335 VVLIVKGTAIR--EVPESLGQLSSIVRLDLSNNNLERTP-ASLYQLSSIKYLKLFDNNFKHR 393 (490)
Q Consensus 335 ~~L~L~~n~l~--~~p~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~ls~n~~~~~ 393 (490)
..++.+++.++ .+|..+ .++|++|+|++|+|+.+| ..|..+++|++|+|++|++.-.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 47888888888 788643 357999999999999996 4567799999999999998543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.0035 Score=50.69 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=35.0
Q ss_pred cEEEcCCCCcc--cccccccCCCCCCEEecCCCCCCCCCC-CcccCCCCcEEecCCCCCC
Q 011233 50 VSLKMPGRKVK--QLWNDVRNLVNLKYIDLSHSESLTKLP-DLSLARNLEILDLGSCSSL 106 (490)
Q Consensus 50 ~~L~Ls~n~i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~l~~L~~L~L~~n~~~ 106 (490)
++++.++++++ .+|..+. .+|++|+|++|++....+ .|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777777 6775443 357777777777555444 5566667777777766543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.53 E-value=0.00059 Score=59.30 Aligned_cols=85 Identities=22% Similarity=0.122 Sum_probs=63.0
Q ss_pred cCccccceeecccc-cccc----cCCcccCCccccceeeccCccccc-----CCccccCCCCCCEEeCcCCCCC-----C
Q 011233 305 CMLKYLTSLAIIDC-KNFK----RLPNELGNLKCLVVLIVKGTAIRE-----VPESLGQLSSIVRLDLSNNNLE-----R 369 (490)
Q Consensus 305 ~~l~~L~~L~Ls~n-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~-----~p~~~~~l~~L~~L~Ls~n~l~-----~ 369 (490)
.+-+.|+.|+|++| .+.. .+.+++..-..|+.|+|++|++.+ +.+.+..-+.|++|+|++|+|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456777777765 4332 234456666899999999999987 4456667789999999999998 3
Q ss_pred CchhhhccCCCCEEecCCCC
Q 011233 370 TPASLYQLSSIKYLKLFDNN 389 (490)
Q Consensus 370 l~~~l~~l~~L~~L~ls~n~ 389 (490)
+.+.+..-+.|++|+|++|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCceeEEECCCCc
Confidence 45666677889999998763
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.52 E-value=33 Score=25.44 Aligned_cols=37 Identities=11% Similarity=-0.085 Sum_probs=16.3
Q ss_pred CcccCCCCcEEecCCCCCCcccchhhhccccCcEEEcc
Q 011233 88 DLSLARNLEILDLGSCSSLTETHSSIQYLNKLEVLDLR 125 (490)
Q Consensus 88 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls 125 (490)
.|.++.+|+.+.|-. .+...-..+|.+|.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 344444444444443 2333333444555555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.04 E-value=51 Score=24.38 Aligned_cols=44 Identities=18% Similarity=0.037 Sum_probs=26.0
Q ss_pred CCccccc-ccccCCCCCCEEecCCCCCCCCCC--CcccCCCCcEEecCC
Q 011233 57 RKVKQLW-NDVRNLVNLKYIDLSHSESLTKLP--DLSLARNLEILDLGS 102 (490)
Q Consensus 57 n~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~--~~~~l~~L~~L~L~~ 102 (490)
..++.|. ..|.+|.+|+.+.+-.+ ...+. .|.++.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 3445554 56666777777777643 22232 666777777776655
Done!